Query 048566
Match_columns 760
No_of_seqs 395 out of 3784
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 18:40:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048566.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048566hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.8E-41 6E-46 378.9 8.9 264 1-282 160-472 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.1E-32 3.9E-37 309.7 17.8 233 1-274 158-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.7E-31 5.7E-36 331.4 21.5 258 1-281 155-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 7E-29 2.4E-33 281.8 22.1 254 1-278 155-449 (591)
5 3vq2_A TLR4, TOLL-like recepto 99.9 7.7E-25 2.6E-29 249.9 28.6 228 285-517 16-323 (606)
6 2z63_A TOLL-like receptor 4, v 99.9 1.1E-24 3.6E-29 247.0 26.0 402 288-721 15-511 (570)
7 1o6v_A Internalin A; bacterial 99.9 2.9E-24 9.8E-29 236.3 27.9 345 301-719 45-390 (466)
8 4ecn_A Leucine-rich repeat pro 99.9 1.1E-24 3.8E-29 252.4 25.0 162 342-518 440-636 (876)
9 4fmz_A Internalin; leucine ric 99.9 5.2E-24 1.8E-28 225.1 25.0 303 322-714 42-344 (347)
10 4eco_A Uncharacterized protein 99.9 1.4E-24 4.8E-29 247.6 21.9 166 337-517 194-393 (636)
11 4ecn_A Leucine-rich repeat pro 99.9 1.8E-24 6.1E-29 250.6 22.7 380 317-749 440-873 (876)
12 3t6q_A CD180 antigen; protein- 99.9 2.9E-23 1E-27 236.8 28.1 165 289-458 21-193 (606)
13 1o6v_A Internalin A; bacterial 99.9 3.6E-23 1.2E-27 227.6 27.4 325 322-720 44-369 (466)
14 3o6n_A APL1; leucine-rich repe 99.9 1.8E-23 6E-28 224.7 22.1 307 319-714 40-350 (390)
15 4fmz_A Internalin; leucine ric 99.9 1.1E-22 3.6E-27 215.0 25.3 304 299-681 41-344 (347)
16 3rgz_A Protein brassinosteroid 99.9 7.5E-23 2.6E-27 238.9 26.0 388 302-723 247-724 (768)
17 2z81_A CD282 antigen, TOLL-lik 99.9 1.6E-23 5.5E-28 236.0 19.4 180 300-494 24-211 (549)
18 3rgz_A Protein brassinosteroid 99.9 4.8E-23 1.6E-27 240.6 23.2 371 301-721 177-556 (768)
19 4eco_A Uncharacterized protein 99.9 3.9E-23 1.3E-27 235.7 21.2 379 320-749 202-633 (636)
20 3vq2_A TLR4, TOLL-like recepto 99.9 2.3E-22 7.8E-27 229.5 27.5 193 306-512 15-215 (606)
21 3t6q_A CD180 antigen; protein- 99.9 1.3E-22 4.3E-27 231.6 23.5 85 301-388 104-193 (606)
22 3oja_B Anopheles plasmodium-re 99.9 1.5E-22 5.2E-27 229.5 22.7 307 319-714 46-356 (597)
23 2z7x_B TOLL-like receptor 1, v 99.9 6.4E-22 2.2E-26 221.2 27.0 142 306-456 4-150 (520)
24 2z81_A CD282 antigen, TOLL-lik 99.9 5.2E-22 1.8E-26 223.7 25.2 153 301-457 49-209 (549)
25 2z63_A TOLL-like receptor 4, v 99.9 3.7E-22 1.3E-26 226.1 22.9 372 301-714 51-529 (570)
26 3v47_A TOLL-like receptor 5B a 99.9 3E-22 1E-26 220.0 20.8 361 300-714 28-406 (455)
27 1ziw_A TOLL-like receptor 3; i 99.9 3.2E-21 1.1E-25 223.0 29.3 154 300-457 23-184 (680)
28 3bz5_A Internalin-J, INLJ; leu 99.9 1.4E-21 5E-26 212.9 24.0 309 301-686 41-354 (457)
29 3j0a_A TOLL-like receptor 5; m 99.9 8.4E-22 2.9E-26 232.5 23.7 165 288-457 12-187 (844)
30 1ziw_A TOLL-like receptor 3; i 99.9 5.2E-21 1.8E-25 221.3 29.3 168 312-495 14-187 (680)
31 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.9E-21 1.3E-25 216.8 26.9 143 305-456 34-181 (562)
32 3bz5_A Internalin-J, INLJ; leu 99.9 1.3E-21 4.3E-26 213.4 19.6 311 321-713 39-349 (457)
33 3v47_A TOLL-like receptor 5B a 99.9 4.2E-21 1.4E-25 210.9 23.9 347 312-729 20-398 (455)
34 2z7x_B TOLL-like receptor 1, v 99.9 1E-20 3.5E-25 211.4 27.0 122 327-457 3-128 (520)
35 2id5_A Lingo-1, leucine rich r 99.9 3.9E-21 1.3E-25 212.3 22.7 309 307-681 16-331 (477)
36 3o6n_A APL1; leucine-rich repe 99.9 3.8E-21 1.3E-25 206.4 20.5 301 301-681 44-350 (390)
37 4g8a_A TOLL-like receptor 4; l 99.9 1.4E-20 4.9E-25 216.0 24.5 146 291-441 42-194 (635)
38 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.1E-20 1.1E-24 209.4 24.6 149 322-491 29-181 (562)
39 2id5_A Lingo-1, leucine rich r 99.9 2.8E-20 9.5E-25 205.5 23.3 149 352-512 33-187 (477)
40 3oja_B Anopheles plasmodium-re 99.8 1.8E-20 6.1E-25 212.5 20.4 301 301-681 50-356 (597)
41 3j0a_A TOLL-like receptor 5; m 99.8 1.1E-19 3.8E-24 214.4 27.9 186 311-513 13-216 (844)
42 4fcg_A Uncharacterized protein 99.8 4.2E-20 1.4E-24 192.5 20.1 90 349-438 79-169 (328)
43 4g8a_A TOLL-like receptor 4; l 99.8 1.4E-19 4.8E-24 207.8 22.7 140 313-457 42-186 (635)
44 1jl5_A Outer protein YOPM; leu 99.8 6.5E-19 2.2E-23 191.8 25.2 308 324-719 91-411 (454)
45 2ft3_A Biglycan; proteoglycan, 99.8 1.2E-19 4.2E-24 190.0 18.5 169 325-513 34-205 (332)
46 1xku_A Decorin; proteoglycan, 99.8 3.8E-19 1.3E-23 186.2 19.9 169 325-512 32-203 (330)
47 1jl5_A Outer protein YOPM; leu 99.8 1.2E-18 4.3E-23 189.6 24.3 323 300-714 89-427 (454)
48 2ft3_A Biglycan; proteoglycan, 99.8 2.4E-18 8.4E-23 180.1 19.8 148 351-515 33-186 (332)
49 4fcg_A Uncharacterized protein 99.8 1.2E-18 4.3E-23 181.4 17.4 136 373-512 80-217 (328)
50 3g06_A SSPH2 (leucine-rich rep 99.8 5.4E-18 1.8E-22 190.2 22.2 78 587-683 220-297 (622)
51 1ogq_A PGIP-2, polygalacturona 99.8 1.2E-18 4.1E-23 180.4 15.1 66 642-719 242-307 (313)
52 1xku_A Decorin; proteoglycan, 99.8 1.5E-17 5E-22 174.0 21.4 149 350-515 30-185 (330)
53 2z80_A TOLL-like receptor 2, v 99.8 1.8E-18 6.2E-23 182.8 12.6 129 352-491 53-186 (353)
54 1ogq_A PGIP-2, polygalacturona 99.8 9.1E-18 3.1E-22 173.8 17.4 150 325-491 51-209 (313)
55 3g06_A SSPH2 (leucine-rich rep 99.8 4.7E-17 1.6E-21 182.5 24.2 256 303-656 41-296 (622)
56 2z66_A Variable lymphocyte rec 99.7 4E-17 1.4E-21 168.7 16.3 192 307-513 12-211 (306)
57 1z7x_W Ribonuclease inhibitor; 99.7 1.5E-19 5.3E-24 198.7 -2.9 357 324-714 3-409 (461)
58 3o53_A Protein LRIM1, AGAP0063 99.7 2.8E-18 9.7E-23 178.1 6.0 252 342-719 25-278 (317)
59 2z80_A TOLL-like receptor 2, v 99.7 3.5E-17 1.2E-21 172.8 13.9 191 311-516 40-237 (353)
60 3ogk_B Coronatine-insensitive 99.7 1.7E-18 5.8E-23 196.9 3.0 148 560-719 376-528 (592)
61 2p1m_B Transport inhibitor res 99.7 1.9E-18 6.5E-23 196.6 3.4 143 560-715 370-518 (594)
62 3zyj_A Leucine-rich repeat-con 99.7 1.8E-16 6.1E-21 172.7 18.3 190 306-512 47-242 (440)
63 3zyi_A Leucine-rich repeat-con 99.7 1.8E-16 6E-21 173.4 17.8 185 311-512 63-253 (452)
64 3zyi_A Leucine-rich repeat-con 99.7 1.3E-16 4.6E-21 174.4 16.6 172 326-514 56-231 (452)
65 3zyj_A Leucine-rich repeat-con 99.7 1.5E-16 5.2E-21 173.3 16.8 173 326-515 45-221 (440)
66 1ozn_A Reticulon 4 receptor; N 99.7 1.1E-16 3.7E-21 163.7 13.4 196 301-511 31-235 (285)
67 1h6u_A Internalin H; cell adhe 99.7 5.2E-16 1.8E-20 160.1 18.3 194 300-516 39-232 (308)
68 3o53_A Protein LRIM1, AGAP0063 99.7 1.8E-17 6.1E-22 172.1 6.0 245 322-633 32-278 (317)
69 3ogk_B Coronatine-insensitive 99.7 1.8E-17 6.3E-22 188.3 6.6 119 560-685 401-527 (592)
70 1ozn_A Reticulon 4 receptor; N 99.7 7.5E-16 2.6E-20 157.4 17.5 216 306-551 15-237 (285)
71 2z66_A Variable lymphocyte rec 99.7 5.2E-16 1.8E-20 160.4 14.9 144 328-489 11-160 (306)
72 2o6q_A Variable lymphocyte rec 99.6 3.1E-15 1.1E-19 151.3 17.9 194 303-512 17-216 (270)
73 1wwl_A Monocyte differentiatio 99.6 8.7E-16 3E-20 158.9 13.8 182 322-517 93-290 (312)
74 1p9a_G Platelet glycoprotein I 99.6 2.5E-15 8.4E-20 153.4 15.9 193 303-512 11-206 (290)
75 1p9a_G Platelet glycoprotein I 99.6 2.5E-15 8.7E-20 153.3 15.9 180 321-518 7-189 (290)
76 1z7x_W Ribonuclease inhibitor; 99.6 1.4E-17 4.8E-22 183.0 -1.2 361 322-714 26-438 (461)
77 1h6u_A Internalin H; cell adhe 99.6 2.2E-15 7.6E-20 155.3 15.0 174 320-516 37-210 (308)
78 1wwl_A Monocyte differentiatio 99.6 1.4E-16 4.7E-21 165.0 5.3 172 324-512 43-239 (312)
79 2p1m_B Transport inhibitor res 99.6 1.2E-16 4.1E-21 181.7 4.9 355 322-715 103-493 (594)
80 3rfs_A Internalin B, repeat mo 99.6 1.2E-14 4.1E-19 147.1 16.8 106 349-456 39-145 (272)
81 3oja_A Leucine-rich immune mol 99.6 1.3E-15 4.3E-20 167.6 10.1 172 322-514 32-204 (487)
82 2o6q_A Variable lymphocyte rec 99.6 1.4E-14 4.8E-19 146.5 17.0 188 288-491 24-217 (270)
83 2xwt_C Thyrotropin receptor; s 99.6 3.7E-15 1.3E-19 147.8 11.6 128 325-456 32-168 (239)
84 3oja_A Leucine-rich immune mol 99.6 1.8E-15 6.3E-20 166.2 10.0 98 352-457 35-133 (487)
85 1h6t_A Internalin B; cell adhe 99.6 2.2E-14 7.7E-19 146.4 17.2 169 301-492 45-213 (291)
86 1h6t_A Internalin B; cell adhe 99.6 1.3E-14 4.6E-19 148.0 15.4 173 320-515 42-214 (291)
87 2xwt_C Thyrotropin receptor; s 99.6 4.5E-15 1.5E-19 147.2 11.5 192 300-508 29-233 (239)
88 2z62_A TOLL-like receptor 4, v 99.6 9.4E-15 3.2E-19 148.4 14.1 181 324-516 28-215 (276)
89 2z62_A TOLL-like receptor 4, v 99.6 6.9E-15 2.4E-19 149.4 13.0 199 299-513 25-236 (276)
90 3m19_A Variable lymphocyte rec 99.6 3.6E-14 1.2E-18 141.8 16.3 173 304-492 16-192 (251)
91 3rfs_A Internalin B, repeat mo 99.6 3.8E-14 1.3E-18 143.4 16.3 173 301-490 40-216 (272)
92 4ay9_X Follicle-stimulating ho 99.6 6.3E-14 2.1E-18 147.4 17.4 80 587-679 176-255 (350)
93 2ast_B S-phase kinase-associat 99.6 4.9E-15 1.7E-19 155.3 8.8 124 353-489 49-178 (336)
94 4ezg_A Putative uncharacterize 99.5 2.3E-14 7.9E-19 137.3 12.1 148 322-490 42-192 (197)
95 1m9s_A Internalin B; cell inva 99.5 4.1E-14 1.4E-18 158.5 12.9 168 301-491 42-209 (605)
96 4glp_A Monocyte differentiatio 99.5 4E-14 1.4E-18 146.3 11.0 179 323-516 90-287 (310)
97 3m19_A Variable lymphocyte rec 99.5 1.8E-13 6E-18 136.7 14.8 171 325-513 15-191 (251)
98 1m9s_A Internalin B; cell inva 99.5 9.7E-14 3.3E-18 155.5 14.2 177 318-517 37-213 (605)
99 4ezg_A Putative uncharacterize 99.5 1.5E-13 5.2E-18 131.6 12.9 145 302-455 44-192 (197)
100 4glp_A Monocyte differentiatio 99.5 1.4E-13 4.8E-18 142.2 12.8 195 302-513 91-306 (310)
101 3e6j_A Variable lymphocyte rec 99.5 5.8E-13 2E-17 130.7 14.8 146 307-457 24-172 (229)
102 4ay9_X Follicle-stimulating ho 99.5 5.1E-13 1.7E-17 140.4 14.8 101 352-453 31-137 (350)
103 1xeu_A Internalin C; cellular 99.4 3.3E-13 1.1E-17 135.4 12.0 155 315-493 32-186 (263)
104 2ell_A Acidic leucine-rich nuc 99.4 5.2E-13 1.8E-17 124.2 12.2 139 349-496 22-164 (168)
105 2v70_A SLIT-2, SLIT homolog 2 99.4 7E-13 2.4E-17 129.2 13.3 129 325-456 33-165 (220)
106 1xeu_A Internalin C; cellular 99.4 5.2E-13 1.8E-17 134.0 12.7 151 347-516 37-187 (263)
107 2v9t_B SLIT homolog 2 protein 99.4 8.3E-13 2.8E-17 128.6 13.1 137 315-456 24-164 (220)
108 2o6s_A Variable lymphocyte rec 99.4 1.7E-12 5.8E-17 125.5 14.6 154 314-490 19-176 (208)
109 2ast_B S-phase kinase-associat 99.4 1.7E-13 5.9E-18 143.5 7.0 196 302-511 70-282 (336)
110 2v9t_B SLIT homolog 2 protein 99.4 1.3E-12 4.3E-17 127.3 11.9 145 328-490 15-163 (220)
111 2v70_A SLIT-2, SLIT homolog 2 99.4 3.4E-12 1.2E-16 124.2 12.6 146 327-490 14-164 (220)
112 3cvr_A Invasion plasmid antige 99.4 7.1E-12 2.4E-16 138.8 16.0 181 303-513 60-242 (571)
113 3cvr_A Invasion plasmid antige 99.3 5.4E-12 1.8E-16 139.7 14.9 176 324-550 59-241 (571)
114 3e6j_A Variable lymphocyte rec 99.3 4.1E-12 1.4E-16 124.6 12.2 147 326-491 21-171 (229)
115 2ell_A Acidic leucine-rich nuc 99.3 2.9E-12 9.8E-17 119.2 9.7 130 323-457 23-160 (168)
116 2je0_A Acidic leucine-rich nuc 99.3 1.6E-12 5.5E-17 118.2 7.6 129 350-487 16-148 (149)
117 2xot_A Amphoterin-induced prot 99.3 4.1E-12 1.4E-16 134.0 11.6 103 353-456 41-148 (361)
118 2o6s_A Variable lymphocyte rec 99.3 5.7E-12 2E-16 121.7 11.4 152 341-512 21-176 (208)
119 1a9n_A U2A', U2A'; complex (nu 99.3 4.2E-12 1.4E-16 119.0 9.8 134 347-490 15-151 (176)
120 3goz_A Leucine-rich repeat-con 99.3 6.6E-13 2.2E-17 140.4 4.5 128 326-457 24-180 (362)
121 2je0_A Acidic leucine-rich nuc 99.3 2.9E-12 9.8E-17 116.5 8.0 124 324-452 17-148 (149)
122 2ca6_A RAN GTPase-activating p 99.3 4.7E-13 1.6E-17 142.9 2.9 132 322-456 30-199 (386)
123 2ca6_A RAN GTPase-activating p 99.3 1E-12 3.5E-17 140.3 5.4 204 301-512 31-285 (386)
124 2xot_A Amphoterin-induced prot 99.3 6.2E-12 2.1E-16 132.7 10.9 171 306-492 22-202 (361)
125 2wfh_A SLIT homolog 2 protein 99.3 2.1E-11 7.2E-16 115.8 12.1 124 327-457 13-139 (193)
126 4b8c_D Glucose-repressible alc 99.3 1.2E-11 4.2E-16 142.1 11.9 156 302-461 173-333 (727)
127 1w8a_A SLIT protein; signaling 99.2 1.9E-11 6.6E-16 116.1 10.3 105 352-457 30-139 (192)
128 1w8a_A SLIT protein; signaling 99.2 1.8E-11 6.1E-16 116.4 9.3 124 354-491 11-138 (192)
129 1a9n_A U2A', U2A'; complex (nu 99.2 1.4E-11 4.8E-16 115.4 7.6 134 318-457 13-153 (176)
130 1ds9_A Outer arm dynein; leuci 99.2 1.6E-12 5.3E-17 124.5 0.9 155 325-485 24-180 (198)
131 2wfh_A SLIT homolog 2 protein 99.2 7.1E-11 2.4E-15 112.2 11.2 123 354-490 13-137 (193)
132 1dce_A Protein (RAB geranylger 99.2 8E-11 2.7E-15 131.1 12.6 150 345-507 403-566 (567)
133 3goz_A Leucine-rich repeat-con 99.1 4.1E-11 1.4E-15 126.5 7.4 201 301-512 21-264 (362)
134 1dce_A Protein (RAB geranylger 99.1 1.5E-10 5E-15 129.0 12.2 124 352-486 442-567 (567)
135 2o6r_A Variable lymphocyte rec 99.1 3.2E-10 1.1E-14 106.2 11.8 106 351-457 28-137 (177)
136 2o6r_A Variable lymphocyte rec 99.1 7.1E-10 2.4E-14 103.8 11.3 126 353-492 9-137 (177)
137 2r9u_A Variable lymphocyte rec 99.0 5E-10 1.7E-14 104.2 9.4 101 354-457 15-118 (174)
138 3g39_A Variable lymphocyte rec 99.0 5.5E-10 1.9E-14 103.6 9.2 102 353-457 11-115 (170)
139 1ds9_A Outer arm dynein; leuci 99.0 3.5E-11 1.2E-15 115.1 0.5 124 321-450 45-180 (198)
140 4b8c_D Glucose-repressible alc 99.0 4.7E-10 1.6E-14 129.0 8.9 122 359-494 209-331 (727)
141 1w5s_A Origin recognition comp 99.0 3.6E-09 1.2E-13 113.9 13.7 237 1-259 60-371 (412)
142 2qen_A Walker-type ATPase; unk 99.0 1.9E-08 6.4E-13 105.5 18.5 241 1-275 39-349 (350)
143 2fna_A Conserved hypothetical 98.8 6.1E-08 2.1E-12 101.9 17.7 242 1-274 38-356 (357)
144 2r9u_A Variable lymphocyte rec 98.8 1.2E-08 4.1E-13 94.8 9.7 103 327-436 15-121 (174)
145 3g39_A Variable lymphocyte rec 98.8 1.3E-08 4.6E-13 94.1 9.0 98 326-429 11-112 (170)
146 2qby_B CDC6 homolog 3, cell di 98.7 9.2E-07 3.1E-11 93.9 20.7 234 1-259 53-339 (384)
147 3un9_A NLR family member X1; l 98.6 6.2E-09 2.1E-13 109.4 1.9 134 350-491 100-251 (372)
148 2ifg_A High affinity nerve gro 98.6 6E-08 2.1E-12 101.5 8.7 99 356-457 13-116 (347)
149 3sb4_A Hypothetical leucine ri 98.5 1.6E-07 5.3E-12 97.4 9.7 159 342-515 84-311 (329)
150 2v1u_A Cell division control p 98.5 3E-06 1E-10 89.9 18.9 235 1-259 52-351 (387)
151 3sb4_A Hypothetical leucine ri 98.5 1.1E-07 3.7E-12 98.6 7.4 167 323-507 100-327 (329)
152 2qby_A CDC6 homolog 1, cell di 98.4 3.4E-06 1.2E-10 89.5 16.9 235 1-259 53-348 (386)
153 3un9_A NLR family member X1; l 98.4 5.3E-08 1.8E-12 102.3 0.8 155 350-512 71-250 (372)
154 4fdw_A Leucine rich hypothetic 98.4 1.2E-05 4.1E-10 85.2 18.9 122 323-454 112-236 (401)
155 1fnn_A CDC6P, cell division co 98.4 1E-05 3.5E-10 85.9 18.2 236 2-259 53-351 (389)
156 3e4g_A ATP synthase subunit S, 98.4 2.7E-07 9.2E-12 84.1 4.8 90 589-684 62-153 (176)
157 2ifg_A High affinity nerve gro 98.3 6.4E-07 2.2E-11 93.6 7.7 90 337-429 20-113 (347)
158 3e4g_A ATP synthase subunit S, 98.2 4.1E-07 1.4E-11 82.8 3.3 91 617-719 61-155 (176)
159 4fdw_A Leucine rich hypothetic 98.2 4.2E-05 1.4E-09 81.0 18.4 146 324-491 135-283 (401)
160 1njg_A DNA polymerase III subu 98.2 5.6E-06 1.9E-10 81.5 10.2 84 71-155 125-231 (250)
161 4fs7_A Uncharacterized protein 98.1 7E-05 2.4E-09 79.5 18.8 123 321-453 68-194 (394)
162 2ra8_A Uncharacterized protein 98.1 1.7E-06 5.7E-11 90.1 4.7 57 346-404 167-227 (362)
163 2chg_A Replication factor C sm 98.1 1.7E-05 5.9E-10 76.6 11.4 131 2-151 47-203 (226)
164 1io0_A Tropomodulin; LRR prote 97.9 6.7E-06 2.3E-10 76.9 4.1 110 346-456 31-163 (185)
165 2ra8_A Uncharacterized protein 97.9 2.8E-05 9.6E-10 80.8 9.1 139 365-512 163-318 (362)
166 1hqc_A RUVB; extended AAA-ATPa 97.8 5.4E-05 1.9E-09 77.9 10.5 44 111-155 171-214 (324)
167 4fs7_A Uncharacterized protein 97.8 0.00038 1.3E-08 73.7 17.2 317 302-708 71-393 (394)
168 4gt6_A Cell surface protein; l 97.7 0.0074 2.5E-07 63.7 24.0 19 342-360 78-96 (394)
169 1sxj_B Activator 1 37 kDa subu 97.7 0.00013 4.4E-09 75.0 10.0 137 2-153 51-211 (323)
170 3rw6_A Nuclear RNA export fact 97.6 8.7E-05 3E-09 72.9 7.3 61 349-409 168-233 (267)
171 3rw6_A Nuclear RNA export fact 97.5 2.5E-05 8.5E-10 76.8 2.1 40 372-411 168-211 (267)
172 1io0_A Tropomodulin; LRR prote 97.5 9.1E-05 3.1E-09 69.1 5.9 107 322-429 34-161 (185)
173 4gt6_A Cell surface protein; l 97.4 0.0086 2.9E-07 63.2 19.4 110 341-454 53-170 (394)
174 1iqp_A RFCS; clamp loader, ext 97.4 0.00069 2.4E-08 69.6 10.6 134 2-153 55-213 (327)
175 3te6_A Regulatory protein SIR3 97.4 0.0019 6.5E-08 65.0 13.4 84 2-85 54-145 (318)
176 1d2n_A N-ethylmaleimide-sensit 97.0 0.0086 2.9E-07 59.5 14.0 16 2-17 73-88 (272)
177 1jr3_A DNA polymerase III subu 96.8 0.0047 1.6E-07 64.6 10.3 78 71-152 118-221 (373)
178 2chq_A Replication factor C sm 96.7 0.0051 1.8E-07 62.7 9.7 92 2-110 47-142 (319)
179 3ec2_A DNA replication protein 96.7 0.0013 4.4E-08 60.9 4.7 92 2-110 47-143 (180)
180 2z4s_A Chromosomal replication 96.6 0.0065 2.2E-07 64.9 10.3 94 2-110 139-237 (440)
181 2qz4_A Paraplegin; AAA+, SPG7, 96.6 0.012 4.2E-07 57.9 11.6 63 2-84 48-110 (262)
182 3h4m_A Proteasome-activating n 96.5 0.011 3.7E-07 59.2 10.5 63 2-84 60-122 (285)
183 4h09_A Hypothetical leucine ri 96.5 0.12 4.2E-06 53.8 19.1 70 642-725 284-353 (379)
184 1jbk_A CLPB protein; beta barr 96.4 0.0056 1.9E-07 57.0 7.1 70 2-84 52-127 (195)
185 2w58_A DNAI, primosome compone 96.3 0.0021 7.1E-08 60.7 3.8 91 2-110 63-159 (202)
186 1a5t_A Delta prime, HOLB; zinc 96.3 0.019 6.4E-07 58.9 11.1 40 71-110 107-148 (334)
187 3bos_A Putative DNA replicatio 96.3 0.0016 5.4E-08 63.5 2.6 30 2-33 61-90 (242)
188 3eie_A Vacuolar protein sortin 96.3 0.029 9.9E-07 57.2 12.1 63 2-84 60-122 (322)
189 1xwi_A SKD1 protein; VPS4B, AA 96.2 0.056 1.9E-06 55.0 13.9 64 2-84 54-117 (322)
190 3syl_A Protein CBBX; photosynt 96.1 0.0094 3.2E-07 60.5 7.8 19 2-20 76-94 (309)
191 3d8b_A Fidgetin-like protein 1 96.0 0.043 1.5E-06 56.7 12.1 62 2-83 126-187 (357)
192 1sxj_D Activator 1 41 kDa subu 96.0 0.019 6.4E-07 59.4 9.3 142 2-149 67-232 (353)
193 3pvs_A Replication-associated 95.9 0.056 1.9E-06 57.5 12.9 123 2-149 59-212 (447)
194 3u61_B DNA polymerase accessor 95.7 0.026 8.9E-07 57.6 8.8 87 2-110 57-146 (324)
195 4b4t_J 26S protease regulatory 95.7 0.093 3.2E-06 54.3 12.6 63 2-84 191-253 (405)
196 2qp9_X Vacuolar protein sortin 95.6 0.063 2.2E-06 55.4 11.3 63 2-84 93-155 (355)
197 3n70_A Transport activator; si 95.4 0.0041 1.4E-07 55.0 1.3 82 2-110 33-116 (145)
198 3vfd_A Spastin; ATPase, microt 95.3 0.1 3.6E-06 54.6 12.2 63 2-84 157-219 (389)
199 2zan_A Vacuolar protein sortin 95.3 0.096 3.3E-06 55.9 11.9 64 2-84 176-239 (444)
200 1sxj_A Activator 1 95 kDa subu 95.2 0.058 2E-06 58.9 10.0 137 2-153 86-254 (516)
201 3b9p_A CG5977-PA, isoform A; A 95.2 0.18 6.1E-06 50.5 12.9 63 2-84 63-125 (297)
202 3io5_A Recombination and repai 95.1 0.11 3.7E-06 51.7 10.3 78 2-84 37-123 (333)
203 4b4t_H 26S protease regulatory 95.0 0.19 6.4E-06 52.8 12.5 63 2-84 252-314 (467)
204 4b4t_L 26S protease subunit RP 94.9 0.16 5.3E-06 53.5 11.8 63 2-84 224-286 (437)
205 4h09_A Hypothetical leucine ri 94.8 0.072 2.5E-06 55.6 8.9 106 342-451 231-340 (379)
206 1sxj_E Activator 1 40 kDa subu 94.7 0.11 3.7E-06 53.6 9.9 39 72-110 134-174 (354)
207 4b4t_I 26S protease regulatory 94.6 0.19 6.5E-06 52.2 11.2 63 2-84 225-287 (437)
208 1l8q_A Chromosomal replication 94.6 0.042 1.4E-06 56.1 6.3 91 2-110 46-141 (324)
209 2kjq_A DNAA-related protein; s 94.5 0.013 4.6E-07 51.9 2.0 30 2-33 45-74 (149)
210 3uk6_A RUVB-like 2; hexameric 94.5 0.12 4.1E-06 53.7 9.6 17 2-18 79-95 (368)
211 2p65_A Hypothetical protein PF 94.4 0.044 1.5E-06 50.4 5.6 17 2-18 52-68 (187)
212 2vhj_A Ntpase P4, P4; non- hyd 94.3 0.04 1.4E-06 55.0 5.0 62 1-84 131-194 (331)
213 1sxj_C Activator 1 40 kDa subu 94.2 0.14 4.7E-06 52.6 9.3 17 2-18 55-71 (340)
214 1n0w_A DNA repair protein RAD5 94.2 0.21 7.1E-06 48.2 10.2 82 2-84 33-131 (243)
215 3pfi_A Holliday junction ATP-d 94.1 0.17 5.9E-06 51.7 9.8 17 2-18 64-80 (338)
216 1g5t_A COB(I)alamin adenosyltr 94.0 0.076 2.6E-06 48.8 6.0 103 2-110 37-163 (196)
217 2z43_A DNA repair and recombin 94.0 0.18 6E-06 51.3 9.5 80 2-82 116-213 (324)
218 3hr8_A Protein RECA; alpha and 93.9 0.19 6.6E-06 51.3 9.6 76 2-84 70-151 (356)
219 4b4t_M 26S protease regulatory 93.9 0.15 5.2E-06 53.5 8.9 62 2-83 224-285 (434)
220 2qgz_A Helicase loader, putati 93.9 0.021 7E-07 57.7 2.2 92 2-110 161-258 (308)
221 3rfe_A Platelet glycoprotein I 93.9 0.069 2.4E-06 45.9 5.2 55 400-457 12-68 (130)
222 1v5w_A DMC1, meiotic recombina 93.8 0.25 8.6E-06 50.5 10.3 81 2-83 131-230 (343)
223 1xp8_A RECA protein, recombina 93.4 0.23 7.9E-06 51.1 9.1 76 2-84 83-164 (366)
224 2w0m_A SSO2452; RECA, SSPF, un 93.0 0.19 6.5E-06 48.0 7.5 30 2-33 32-61 (235)
225 2i1q_A DNA repair and recombin 93.0 0.26 9E-06 49.9 8.9 80 2-82 107-214 (322)
226 1pgv_A TMD-1, tropomodulin TMD 93.0 0.091 3.1E-06 48.5 4.8 82 347-428 37-135 (197)
227 1u94_A RECA protein, recombina 93.0 0.29 1E-05 50.1 9.1 75 2-83 72-152 (356)
228 2zr9_A Protein RECA, recombina 92.7 0.34 1.1E-05 49.6 9.2 75 2-83 70-150 (349)
229 2gno_A DNA polymerase III, gam 92.5 0.17 5.9E-06 50.7 6.4 92 2-110 27-122 (305)
230 2cvh_A DNA repair and recombin 92.4 0.44 1.5E-05 44.9 9.1 35 2-41 29-63 (220)
231 1fx0_B ATP synthase beta chain 92.4 0.35 1.2E-05 51.1 8.8 81 2-83 174-277 (498)
232 3lda_A DNA repair protein RAD5 92.3 0.51 1.7E-05 49.2 9.9 80 2-82 187-283 (400)
233 1sky_E F1-ATPase, F1-ATP synth 92.3 0.35 1.2E-05 51.0 8.6 81 2-83 160-256 (473)
234 2ck3_D ATP synthase subunit be 92.2 0.5 1.7E-05 49.7 9.6 82 2-84 162-265 (482)
235 4fcw_A Chaperone protein CLPB; 91.9 0.076 2.6E-06 53.6 3.1 76 2-84 56-131 (311)
236 3t15_A Ribulose bisphosphate c 91.4 0.22 7.4E-06 49.7 5.8 17 2-18 45-61 (293)
237 3co5_A Putative two-component 91.3 0.026 8.8E-07 49.6 -1.1 16 2-17 36-51 (143)
238 3cf0_A Transitional endoplasmi 91.2 0.32 1.1E-05 48.7 6.8 62 2-83 58-119 (301)
239 2x8a_A Nuclear valosin-contain 90.4 0.61 2.1E-05 45.9 7.9 62 2-83 53-114 (274)
240 3bh0_A DNAB-like replicative h 90.4 1.2 4.1E-05 44.8 10.2 42 2-47 77-118 (315)
241 3rfe_A Platelet glycoprotein I 90.4 0.29 1E-05 41.9 4.8 9 419-427 55-63 (130)
242 3ice_A Transcription terminati 90.4 0.24 8.3E-06 50.5 4.9 79 2-84 183-273 (422)
243 3hu3_A Transitional endoplasmi 90.3 0.61 2.1E-05 50.1 8.4 61 2-82 247-307 (489)
244 4b4t_K 26S protease regulatory 90.1 0.46 1.6E-05 49.7 7.0 62 2-83 215-276 (428)
245 3vr4_D V-type sodium ATPase su 89.9 0.78 2.7E-05 48.0 8.4 80 2-83 160-259 (465)
246 1lv7_A FTSH; alpha/beta domain 89.7 0.35 1.2E-05 47.2 5.5 62 2-83 54-115 (257)
247 2bjv_A PSP operon transcriptio 89.4 0.12 4E-06 50.9 1.7 31 2-34 38-68 (265)
248 1pgv_A TMD-1, tropomodulin TMD 89.3 0.34 1.2E-05 44.7 4.6 106 323-429 40-167 (197)
249 2c61_A A-type ATP synthase non 88.4 0.83 2.8E-05 48.1 7.3 82 2-83 161-260 (469)
250 1qvr_A CLPB protein; coiled co 88.2 0.83 2.8E-05 53.2 8.1 70 2-84 200-275 (854)
251 3m6a_A ATP-dependent protease 88.1 2.4 8.2E-05 46.2 11.2 17 2-18 117-133 (543)
252 3cwq_A Para family chromosome 87.8 0.52 1.8E-05 44.2 5.0 35 2-39 10-44 (209)
253 2ce7_A Cell division protein F 87.7 0.85 2.9E-05 48.6 7.1 62 2-83 58-119 (476)
254 4a74_A DNA repair and recombin 87.7 2.9 9.9E-05 39.4 10.5 47 2-49 34-84 (231)
255 2dr3_A UPF0273 protein PH0284; 87.7 1.4 4.8E-05 42.2 8.3 30 2-33 32-61 (247)
256 2px0_A Flagellar biosynthesis 87.2 1.3 4.5E-05 44.0 7.8 76 2-80 114-190 (296)
257 3pxg_A Negative regulator of g 86.7 0.67 2.3E-05 49.7 5.6 17 2-18 210-226 (468)
258 1pzn_A RAD51, DNA repair and r 86.4 1.9 6.6E-05 43.9 8.7 82 2-84 140-243 (349)
259 1ixz_A ATP-dependent metallopr 85.9 0.77 2.6E-05 44.5 5.2 17 2-18 58-74 (254)
260 3cmu_A Protein RECA, recombina 85.7 1.3 4.3E-05 55.4 7.8 74 2-82 1436-1515(2050)
261 2r8r_A Sensor protein; KDPD, P 85.5 0.85 2.9E-05 42.9 5.0 32 2-35 15-46 (228)
262 1iy2_A ATP-dependent metallopr 85.4 1.2 4E-05 43.9 6.4 61 2-82 82-142 (278)
263 4dzz_A Plasmid partitioning pr 85.4 0.76 2.6E-05 42.8 4.7 35 2-38 11-45 (206)
264 3gqb_B V-type ATP synthase bet 85.1 1.8 6.1E-05 45.3 7.6 82 2-83 156-262 (464)
265 3pxi_A Negative regulator of g 84.8 0.28 9.6E-06 56.4 1.6 30 2-33 530-559 (758)
266 1qhx_A CPT, protein (chloramph 84.7 0.43 1.5E-05 43.3 2.5 18 1-18 11-28 (178)
267 3hjn_A DTMP kinase, thymidylat 84.5 3.2 0.00011 38.2 8.5 43 2-46 9-51 (197)
268 1r6b_X CLPA protein; AAA+, N-t 84.3 2 6.8E-05 49.2 8.5 70 2-84 216-290 (758)
269 3cf2_A TER ATPase, transitiona 84.3 0.66 2.3E-05 52.7 4.3 63 2-84 247-309 (806)
270 2zts_A Putative uncharacterize 83.9 2.5 8.5E-05 40.5 7.9 40 2-44 39-78 (251)
271 1ojl_A Transcriptional regulat 83.8 0.25 8.5E-06 49.6 0.5 16 2-17 34-49 (304)
272 3kjh_A CO dehydrogenase/acetyl 83.7 0.79 2.7E-05 44.2 4.2 35 2-38 9-43 (254)
273 2ehv_A Hypothetical protein PH 83.5 2.5 8.7E-05 40.5 7.8 30 2-32 39-68 (251)
274 4a1f_A DNAB helicase, replicat 83.2 3.9 0.00013 41.3 9.0 42 2-47 55-96 (338)
275 3l0o_A Transcription terminati 83.1 0.35 1.2E-05 49.3 1.2 33 2-35 184-217 (427)
276 1qvr_A CLPB protein; coiled co 82.8 0.48 1.6E-05 55.2 2.5 30 2-33 597-626 (854)
277 1r6b_X CLPA protein; AAA+, N-t 82.7 0.53 1.8E-05 54.1 2.8 73 2-84 497-569 (758)
278 1hyq_A MIND, cell division inh 82.6 3.4 0.00012 40.0 8.3 30 2-33 12-41 (263)
279 3dm5_A SRP54, signal recogniti 82.4 2.9 0.0001 43.8 8.0 28 2-31 109-136 (443)
280 2xxa_A Signal recognition part 82.3 4.6 0.00016 42.4 9.6 80 1-81 108-192 (433)
281 1j8m_F SRP54, signal recogniti 82.3 3.3 0.00011 41.1 8.0 79 2-82 107-190 (297)
282 3kb2_A SPBC2 prophage-derived 81.3 0.67 2.3E-05 41.6 2.4 18 1-18 9-26 (173)
283 3zq6_A Putative arsenical pump 81.1 1.7 5.7E-05 43.9 5.5 37 2-40 23-59 (324)
284 2ck3_A ATP synthase subunit al 81.1 4.5 0.00015 42.9 8.8 83 2-84 171-274 (510)
285 1cp2_A CP2, nitrogenase iron p 81.0 1.5 5.1E-05 42.8 5.0 31 2-34 10-40 (269)
286 2b8t_A Thymidine kinase; deoxy 80.9 0.44 1.5E-05 45.0 1.0 101 2-110 21-126 (223)
287 3k9g_A PF-32 protein; ssgcid, 80.7 1.2 4.2E-05 43.4 4.2 35 2-39 37-71 (267)
288 3cmw_A Protein RECA, recombina 80.6 2.9 9.8E-05 51.6 8.1 76 2-84 392-473 (1706)
289 2qe7_A ATP synthase subunit al 80.6 4.4 0.00015 42.8 8.5 79 2-84 171-266 (502)
290 1vma_A Cell division protein F 80.6 5.7 0.0002 39.4 9.1 78 2-82 113-196 (306)
291 3bgw_A DNAB-like replicative h 80.4 4.3 0.00015 42.9 8.6 40 2-45 206-245 (444)
292 3trf_A Shikimate kinase, SK; a 80.1 0.79 2.7E-05 41.8 2.5 17 1-17 13-29 (185)
293 3oaa_A ATP synthase subunit al 80.1 4.3 0.00015 42.9 8.2 79 2-84 171-266 (513)
294 3pxi_A Negative regulator of g 80.0 1.6 5.6E-05 49.9 5.6 17 2-18 210-226 (758)
295 3iqw_A Tail-anchored protein t 80.0 1.6 5.4E-05 44.2 4.9 35 2-38 25-59 (334)
296 3end_A Light-independent proto 80.0 1.6 5.4E-05 43.7 4.9 32 2-35 50-81 (307)
297 3vr4_A V-type sodium ATPase ca 79.9 2.6 8.9E-05 45.2 6.5 39 2-44 241-280 (600)
298 3vaa_A Shikimate kinase, SK; s 79.7 0.84 2.9E-05 42.3 2.5 17 1-17 33-49 (199)
299 2q6t_A DNAB replication FORK h 79.7 6.9 0.00024 41.3 10.0 42 2-46 209-250 (444)
300 2dhr_A FTSH; AAA+ protein, hex 79.7 1.2 4E-05 47.9 3.9 17 2-18 73-89 (499)
301 1ly1_A Polynucleotide kinase; 79.3 0.83 2.8E-05 41.4 2.3 15 1-15 10-24 (181)
302 3mfy_A V-type ATP synthase alp 79.1 3.6 0.00012 44.0 7.3 39 2-44 236-275 (588)
303 2afh_E Nitrogenase iron protei 79.1 1.8 6E-05 42.9 4.9 31 2-34 11-41 (289)
304 2xj4_A MIPZ; replication, cell 79.0 1.8 6.2E-05 42.7 4.9 38 2-41 14-52 (286)
305 1ls1_A Signal recognition part 78.9 5.9 0.0002 39.2 8.6 78 2-81 107-189 (295)
306 2c9o_A RUVB-like 1; hexameric 78.6 1.4 4.9E-05 46.9 4.3 17 2-18 72-88 (456)
307 3lw7_A Adenylate kinase relate 78.5 0.91 3.1E-05 40.8 2.3 13 1-13 9-21 (179)
308 3ea0_A ATPase, para family; al 78.4 1.9 6.6E-05 41.2 4.8 32 2-34 14-45 (245)
309 1via_A Shikimate kinase; struc 78.3 0.99 3.4E-05 40.7 2.5 18 1-18 12-29 (175)
310 2r9v_A ATP synthase subunit al 78.2 4.3 0.00015 43.0 7.5 79 2-84 184-279 (515)
311 3kl4_A SRP54, signal recogniti 78.2 4.6 0.00016 42.3 7.8 48 2-51 106-154 (433)
312 1nks_A Adenylate kinase; therm 78.1 1.1 3.6E-05 41.2 2.7 18 1-18 9-26 (194)
313 3fkq_A NTRC-like two-domain pr 78.0 1.9 6.4E-05 44.5 4.8 30 2-33 153-182 (373)
314 3q9l_A Septum site-determining 77.9 2.1 7.3E-05 41.4 5.0 35 2-38 12-47 (260)
315 3iij_A Coilin-interacting nucl 77.8 1 3.5E-05 40.8 2.5 17 1-17 19-35 (180)
316 1kht_A Adenylate kinase; phosp 77.7 1.1 3.8E-05 41.0 2.7 18 1-18 11-28 (192)
317 2rhm_A Putative kinase; P-loop 77.6 1 3.6E-05 41.3 2.5 17 1-17 13-29 (193)
318 1g3q_A MIND ATPase, cell divis 77.5 1.7 5.7E-05 41.5 4.0 30 2-33 12-41 (237)
319 2r6a_A DNAB helicase, replicat 77.5 7.9 0.00027 41.0 9.7 41 2-45 212-252 (454)
320 4eun_A Thermoresistant glucoki 77.4 15 0.00051 33.6 10.6 17 1-17 37-53 (200)
321 1q57_A DNA primase/helicase; d 77.4 4.9 0.00017 43.3 8.1 42 2-46 251-292 (503)
322 3ug7_A Arsenical pump-driving 77.1 2 6.9E-05 43.8 4.7 30 2-33 35-64 (349)
323 1zuh_A Shikimate kinase; alpha 76.9 1.2 4E-05 39.9 2.5 18 1-18 15-32 (168)
324 2ph1_A Nucleotide-binding prot 76.8 1.8 6E-05 42.2 4.0 32 2-35 28-59 (262)
325 3cmu_A Protein RECA, recombina 76.6 4.1 0.00014 51.0 7.8 76 2-84 392-473 (2050)
326 2oze_A ORF delta'; para, walke 76.3 2.3 8E-05 42.2 4.9 33 2-36 46-78 (298)
327 1kag_A SKI, shikimate kinase I 75.9 1.3 4.4E-05 39.8 2.5 17 1-17 12-28 (173)
328 2jaq_A Deoxyguanosine kinase; 75.8 1.3 4.3E-05 41.1 2.5 18 1-18 8-25 (205)
329 2yvu_A Probable adenylyl-sulfa 75.7 1.5 5.2E-05 39.9 3.1 19 1-19 21-39 (186)
330 3t61_A Gluconokinase; PSI-biol 75.7 1.3 4.3E-05 41.2 2.5 17 1-17 26-42 (202)
331 1wcv_1 SOJ, segregation protei 75.6 1.6 5.6E-05 42.2 3.4 31 2-34 16-46 (257)
332 3cmw_A Protein RECA, recombina 75.4 5.1 0.00017 49.4 8.1 74 2-82 1440-1519(1706)
333 1yrb_A ATP(GTP)binding protein 75.1 1.4 4.8E-05 42.8 2.8 27 2-31 23-49 (262)
334 2woo_A ATPase GET3; tail-ancho 74.9 2.7 9.1E-05 42.5 4.8 32 2-35 28-59 (329)
335 2iyv_A Shikimate kinase, SK; t 74.9 1.4 4.7E-05 40.1 2.5 18 1-18 10-27 (184)
336 3io3_A DEHA2D07832P; chaperone 74.8 2.9 9.8E-05 42.5 5.0 37 2-38 27-63 (348)
337 3pg5_A Uncharacterized protein 74.8 2.2 7.6E-05 43.7 4.3 36 2-39 11-46 (361)
338 1y63_A LMAJ004144AAA protein; 74.8 1.4 4.8E-05 40.2 2.5 16 1-16 18-33 (184)
339 1e6c_A Shikimate kinase; phosp 74.6 1.4 4.9E-05 39.4 2.5 18 1-18 10-27 (173)
340 1byi_A Dethiobiotin synthase; 74.5 1.6 5.4E-05 41.2 2.9 18 2-19 11-28 (224)
341 1zp6_A Hypothetical protein AT 74.3 1.3 4.5E-05 40.5 2.2 16 1-16 17-32 (191)
342 3cm0_A Adenylate kinase; ATP-b 74.1 1.5 5.1E-05 39.9 2.5 17 1-17 12-28 (186)
343 2pt5_A Shikimate kinase, SK; a 74.1 1.5 5.2E-05 39.1 2.5 18 1-18 8-25 (168)
344 2ze6_A Isopentenyl transferase 73.7 1.6 5.4E-05 42.3 2.7 18 1-18 9-26 (253)
345 3fwy_A Light-independent proto 73.5 3.1 0.00011 41.6 4.8 30 2-33 57-86 (314)
346 3cf2_A TER ATPase, transitiona 73.5 2.5 8.7E-05 48.0 4.6 62 2-83 520-581 (806)
347 3a4m_A L-seryl-tRNA(SEC) kinas 73.2 1.6 5.3E-05 42.5 2.5 18 1-18 12-29 (260)
348 1fx0_A ATP synthase alpha chai 72.8 3 0.0001 44.2 4.6 78 2-83 172-266 (507)
349 1tev_A UMP-CMP kinase; ploop, 72.8 1.7 5.7E-05 39.9 2.5 17 1-17 11-27 (196)
350 2cdn_A Adenylate kinase; phosp 72.5 1.7 5.8E-05 40.2 2.5 17 1-17 28-44 (201)
351 2vli_A Antibiotic resistance p 72.5 1.1 3.9E-05 40.6 1.3 18 1-18 13-30 (183)
352 2plr_A DTMP kinase, probable t 72.4 1.7 5.8E-05 40.5 2.5 19 1-19 12-30 (213)
353 2ffh_A Protein (FFH); SRP54, s 72.3 12 0.0004 39.1 9.0 79 1-81 106-189 (425)
354 2j37_W Signal recognition part 72.2 14 0.00047 39.6 9.7 29 2-32 110-138 (504)
355 2c95_A Adenylate kinase 1; tra 72.2 1.8 6E-05 39.8 2.5 17 1-17 17-33 (196)
356 2woj_A ATPase GET3; tail-ancho 72.1 4.1 0.00014 41.5 5.5 36 2-39 27-64 (354)
357 2qor_A Guanylate kinase; phosp 72.0 1.8 6.1E-05 40.2 2.5 17 1-17 20-36 (204)
358 1knq_A Gluconate kinase; ALFA/ 71.9 1.8 6.1E-05 38.9 2.5 17 1-17 16-32 (175)
359 3uie_A Adenylyl-sulfate kinase 71.8 1.8 6.1E-05 40.1 2.5 18 1-18 33-50 (200)
360 3gqb_A V-type ATP synthase alp 71.7 3.1 0.00011 44.5 4.4 38 2-43 230-268 (578)
361 1ypw_A Transitional endoplasmi 71.6 4.3 0.00015 46.6 6.0 62 2-83 247-308 (806)
362 2bwj_A Adenylate kinase 5; pho 71.6 1.8 6.3E-05 39.8 2.5 18 1-18 20-37 (199)
363 1aky_A Adenylate kinase; ATP:A 71.3 1.9 6.4E-05 40.6 2.5 17 1-17 12-28 (220)
364 3ez2_A Plasmid partition prote 71.3 3.7 0.00013 42.8 5.0 35 2-36 118-156 (398)
365 1zd8_A GTP:AMP phosphotransfer 70.7 2 6.7E-05 40.7 2.5 17 1-17 15-31 (227)
366 4tmk_A Protein (thymidylate ki 70.4 6.5 0.00022 36.7 6.0 45 1-46 11-55 (213)
367 2r62_A Cell division protease 70.4 1.9 6.4E-05 42.1 2.4 17 2-18 53-69 (268)
368 2z0h_A DTMP kinase, thymidylat 70.4 5.9 0.0002 36.1 5.8 18 1-18 8-25 (197)
369 3lv8_A DTMP kinase, thymidylat 70.3 6.3 0.00021 37.4 5.9 29 1-30 35-63 (236)
370 1m7g_A Adenylylsulfate kinase; 69.8 3.4 0.00012 38.5 4.0 18 1-18 33-50 (211)
371 2pbr_A DTMP kinase, thymidylat 69.8 2.1 7.2E-05 39.2 2.5 18 1-18 8-25 (195)
372 1zak_A Adenylate kinase; ATP:A 69.8 2.2 7.4E-05 40.2 2.6 18 1-18 13-30 (222)
373 3fb4_A Adenylate kinase; psych 69.6 2.2 7.6E-05 39.9 2.6 17 1-17 8-24 (216)
374 2bdt_A BH3686; alpha-beta prot 69.4 2.1 7E-05 39.1 2.3 15 1-15 10-24 (189)
375 1qf9_A UMP/CMP kinase, protein 69.3 2.2 7.5E-05 39.0 2.5 17 1-17 14-30 (194)
376 1ukz_A Uridylate kinase; trans 69.0 2.2 7.6E-05 39.4 2.5 17 1-17 23-39 (203)
377 3be4_A Adenylate kinase; malar 68.9 2.4 8.1E-05 39.8 2.7 17 1-17 13-29 (217)
378 1in4_A RUVB, holliday junction 68.8 2.1 7.1E-05 43.4 2.4 17 2-18 60-76 (334)
379 2wwf_A Thymidilate kinase, put 68.6 2.3 7.8E-05 39.6 2.5 24 1-25 18-41 (212)
380 1gvn_B Zeta; postsegregational 68.5 1.9 6.6E-05 42.5 2.0 17 1-17 41-57 (287)
381 3dl0_A Adenylate kinase; phosp 68.4 2.3 7.9E-05 39.8 2.5 17 1-17 8-24 (216)
382 3v9p_A DTMP kinase, thymidylat 68.3 12 0.00042 35.1 7.5 19 1-19 33-51 (227)
383 3igf_A ALL4481 protein; two-do 68.3 2.5 8.6E-05 43.3 2.9 35 2-39 11-45 (374)
384 1e4v_A Adenylate kinase; trans 68.0 2.5 8.6E-05 39.5 2.6 17 1-17 8-24 (214)
385 1cr0_A DNA primase/helicase; R 67.6 8.1 0.00028 38.1 6.5 41 2-45 44-84 (296)
386 2if2_A Dephospho-COA kinase; a 67.4 2.4 8.2E-05 39.2 2.3 15 1-15 9-23 (204)
387 1ak2_A Adenylate kinase isoenz 67.4 2.5 8.6E-05 40.2 2.5 18 1-18 24-41 (233)
388 1xjc_A MOBB protein homolog; s 67.4 3.3 0.00011 37.0 3.1 17 2-18 13-29 (169)
389 1nn5_A Similar to deoxythymidy 67.2 2.5 8.6E-05 39.4 2.5 24 1-25 17-40 (215)
390 2pez_A Bifunctional 3'-phospho 67.2 4.6 0.00016 36.3 4.2 18 1-18 13-30 (179)
391 2xb4_A Adenylate kinase; ATP-b 66.9 2.6 9E-05 39.7 2.5 17 1-17 8-24 (223)
392 1ye8_A Protein THEP1, hypothet 66.2 2.6 8.8E-05 38.2 2.2 18 2-19 9-26 (178)
393 3ld9_A DTMP kinase, thymidylat 65.9 6.6 0.00023 36.9 5.0 46 1-46 29-74 (223)
394 1kgd_A CASK, peripheral plasma 65.4 2.9 9.8E-05 37.9 2.4 16 2-17 14-29 (180)
395 1jr3_D DNA polymerase III, del 65.2 37 0.0013 34.0 11.1 39 71-109 75-116 (343)
396 2v54_A DTMP kinase, thymidylat 65.0 2.9 9.8E-05 38.6 2.3 17 1-17 12-28 (204)
397 1ihu_A Arsenical pump-driving 64.8 5.5 0.00019 44.0 5.0 34 2-37 17-50 (589)
398 3nwj_A ATSK2; P loop, shikimat 63.5 3.1 0.00011 40.0 2.3 18 1-18 56-73 (250)
399 2bbw_A Adenylate kinase 4, AK4 63.4 3.5 0.00012 39.5 2.7 17 1-17 35-51 (246)
400 1ofh_A ATP-dependent HSL prote 63.3 3.1 0.00011 41.4 2.4 27 2-33 59-85 (310)
401 2grj_A Dephospho-COA kinase; T 63.3 3.4 0.00012 37.9 2.5 16 1-16 20-35 (192)
402 3tlx_A Adenylate kinase 2; str 62.9 3.6 0.00012 39.4 2.7 17 1-17 37-53 (243)
403 3bfv_A CAPA1, CAPB2, membrane 62.7 5.6 0.00019 38.8 4.0 31 2-34 92-122 (271)
404 4eaq_A DTMP kinase, thymidylat 62.6 5.7 0.0002 37.5 4.0 19 1-19 34-52 (229)
405 2j41_A Guanylate kinase; GMP, 62.4 3.4 0.00012 38.2 2.3 17 1-17 14-30 (207)
406 1cke_A CK, MSSA, protein (cyti 62.0 3.8 0.00013 38.5 2.7 17 1-17 13-29 (227)
407 4hlc_A DTMP kinase, thymidylat 61.9 5.7 0.00019 36.8 3.7 23 2-26 11-33 (205)
408 1htw_A HI0065; nucleotide-bind 61.8 3.4 0.00012 36.5 2.1 16 2-17 42-57 (158)
409 3la6_A Tyrosine-protein kinase 61.7 9.7 0.00033 37.4 5.6 35 2-38 102-137 (286)
410 1uf9_A TT1252 protein; P-loop, 61.6 3.6 0.00012 37.8 2.3 16 1-16 16-31 (203)
411 2p5t_B PEZT; postsegregational 61.4 2.5 8.4E-05 40.9 1.2 17 1-17 40-56 (253)
412 1zu4_A FTSY; GTPase, signal re 61.2 6.5 0.00022 39.3 4.3 30 2-33 114-143 (320)
413 3tr0_A Guanylate kinase, GMP k 61.0 3.6 0.00012 38.0 2.2 16 2-17 16-31 (205)
414 1jjv_A Dephospho-COA kinase; P 60.9 3.5 0.00012 38.2 2.1 15 1-15 10-24 (206)
415 4ehx_A Tetraacyldisaccharide 4 60.9 9.6 0.00033 38.0 5.4 18 1-18 46-63 (315)
416 4edh_A DTMP kinase, thymidylat 60.8 12 0.00042 34.7 5.9 25 1-26 14-38 (213)
417 4gp7_A Metallophosphoesterase; 60.8 2.8 9.5E-05 37.6 1.3 13 2-14 18-30 (171)
418 3tqc_A Pantothenate kinase; bi 60.7 16 0.00053 36.5 6.9 32 2-33 101-132 (321)
419 3c8u_A Fructokinase; YP_612366 60.7 3.1 0.00011 38.7 1.7 29 2-32 31-59 (208)
420 2hf9_A Probable hydrogenase ni 60.7 3.8 0.00013 38.5 2.4 17 2-18 47-63 (226)
421 1ltq_A Polynucleotide kinase; 60.6 3.9 0.00013 40.6 2.5 16 1-16 10-25 (301)
422 1nlf_A Regulatory protein REPA 60.5 7.5 0.00025 38.0 4.6 32 2-33 39-78 (279)
423 1tue_A Replication protein E1; 59.9 3.2 0.00011 38.3 1.5 17 2-18 67-83 (212)
424 3cio_A ETK, tyrosine-protein k 59.4 8.9 0.00031 37.9 4.9 34 2-37 114-148 (299)
425 3tau_A Guanylate kinase, GMP k 59.3 4 0.00014 37.9 2.2 17 2-18 17-33 (208)
426 1ex7_A Guanylate kinase; subst 59.1 4.4 0.00015 36.9 2.4 17 2-18 10-26 (186)
427 2fz4_A DNA repair protein RAD2 58.9 14 0.00048 35.0 6.1 16 2-17 117-132 (237)
428 2ga8_A Hypothetical 39.9 kDa p 58.7 4.7 0.00016 40.8 2.7 18 1-18 32-49 (359)
429 2qt1_A Nicotinamide riboside k 58.6 4.1 0.00014 37.8 2.1 15 2-16 30-44 (207)
430 1rz3_A Hypothetical protein rb 57.9 4.4 0.00015 37.4 2.2 17 2-18 31-47 (201)
431 3a00_A Guanylate kinase, GMP k 57.8 4.4 0.00015 36.8 2.1 17 2-18 10-26 (186)
432 3asz_A Uridine kinase; cytidin 57.8 4.4 0.00015 37.6 2.2 17 2-18 15-31 (211)
433 3hws_A ATP-dependent CLP prote 57.7 4.4 0.00015 41.6 2.4 16 2-17 60-75 (363)
434 1uj2_A Uridine-cytidine kinase 57.7 4.7 0.00016 38.8 2.5 18 1-18 30-47 (252)
435 1um8_A ATP-dependent CLP prote 57.7 4.4 0.00015 41.8 2.4 16 2-17 81-96 (376)
436 1gtv_A TMK, thymidylate kinase 57.5 3.5 0.00012 38.3 1.5 17 2-18 9-25 (214)
437 3ez9_A Para; DNA binding, wing 57.4 5.1 0.00017 41.8 2.8 33 2-34 121-157 (403)
438 1vht_A Dephospho-COA kinase; s 57.2 4.7 0.00016 37.7 2.3 15 1-15 12-26 (218)
439 3aez_A Pantothenate kinase; tr 57.2 14 0.00047 36.8 5.8 31 2-32 99-129 (312)
440 3ake_A Cytidylate kinase; CMP 57.1 5 0.00017 37.0 2.5 18 1-18 10-27 (208)
441 1np6_A Molybdopterin-guanine d 56.9 6.1 0.00021 35.5 2.9 17 2-18 15-31 (174)
442 3sr0_A Adenylate kinase; phosp 56.8 5.3 0.00018 37.1 2.5 17 2-18 9-25 (206)
443 1tf7_A KAIC; homohexamer, hexa 56.3 17 0.00057 39.4 6.8 30 2-33 48-78 (525)
444 4e22_A Cytidylate kinase; P-lo 56.2 5.3 0.00018 38.5 2.5 17 1-17 35-51 (252)
445 3r20_A Cytidylate kinase; stru 56.1 5.7 0.0002 37.6 2.7 17 1-17 17-33 (233)
446 2f1r_A Molybdopterin-guanine d 55.7 4.3 0.00015 36.3 1.7 29 2-30 11-39 (171)
447 2i3b_A HCR-ntpase, human cance 55.3 6 0.00021 36.1 2.6 17 2-18 10-26 (189)
448 2ce2_X GTPase HRAS; signaling 55.3 5.2 0.00018 34.9 2.2 16 2-17 12-27 (166)
449 2wsm_A Hydrogenase expression/ 55.2 5.4 0.00018 37.3 2.4 17 2-18 39-55 (221)
450 2ocp_A DGK, deoxyguanosine kin 55.2 5.6 0.00019 37.9 2.5 17 1-17 10-26 (241)
451 3gmt_A Adenylate kinase; ssgci 54.5 6.4 0.00022 37.1 2.7 18 1-18 16-33 (230)
452 3crm_A TRNA delta(2)-isopenten 54.5 5.8 0.0002 39.6 2.5 17 1-17 13-29 (323)
453 2orw_A Thymidine kinase; TMTK, 54.5 7 0.00024 35.5 2.9 37 72-110 76-113 (184)
454 3ney_A 55 kDa erythrocyte memb 54.3 5.9 0.0002 36.4 2.4 16 2-17 28-43 (197)
455 1rj9_A FTSY, signal recognitio 54.2 6.6 0.00022 39.0 2.9 18 2-19 111-128 (304)
456 2r44_A Uncharacterized protein 53.9 4.3 0.00015 40.9 1.5 17 2-18 55-71 (331)
457 1g8f_A Sulfate adenylyltransfe 53.9 5.8 0.0002 42.5 2.5 18 1-18 403-420 (511)
458 3e70_C DPA, signal recognition 53.8 25 0.00085 35.2 7.1 48 2-51 138-186 (328)
459 1odf_A YGR205W, hypothetical 3 53.8 6.2 0.00021 38.9 2.6 44 2-45 40-84 (290)
460 1znw_A Guanylate kinase, GMP k 53.7 5.6 0.00019 36.8 2.2 16 2-17 29-44 (207)
461 1lvg_A Guanylate kinase, GMP k 53.6 5.7 0.00019 36.5 2.2 17 2-18 13-29 (198)
462 2jeo_A Uridine-cytidine kinase 53.2 5.7 0.00019 38.0 2.2 16 2-17 34-49 (245)
463 3umf_A Adenylate kinase; rossm 52.8 6.7 0.00023 36.7 2.5 18 1-18 37-54 (217)
464 1oix_A RAS-related protein RAB 52.7 6 0.00021 36.0 2.2 16 2-17 38-53 (191)
465 2f6r_A COA synthase, bifunctio 52.6 5.8 0.0002 38.9 2.2 14 1-14 83-96 (281)
466 2dyk_A GTP-binding protein; GT 52.6 6.2 0.00021 34.3 2.2 15 2-16 10-24 (161)
467 3b9q_A Chloroplast SRP recepto 51.6 7.7 0.00026 38.5 2.9 18 2-19 109-126 (302)
468 1z6g_A Guanylate kinase; struc 51.5 6.4 0.00022 36.9 2.2 16 2-17 32-47 (218)
469 3con_A GTPase NRAS; structural 51.4 6.5 0.00022 35.5 2.2 16 2-17 30-45 (190)
470 2orv_A Thymidine kinase; TP4A 51.1 9.4 0.00032 35.9 3.2 94 3-110 29-126 (234)
471 2f9l_A RAB11B, member RAS onco 50.9 6.6 0.00023 35.9 2.2 15 2-16 14-28 (199)
472 1bif_A 6-phosphofructo-2-kinas 49.4 7.3 0.00025 41.5 2.5 18 1-18 47-64 (469)
473 1g41_A Heat shock protein HSLU 49.4 7.5 0.00026 40.7 2.5 18 1-18 58-75 (444)
474 1z2a_A RAS-related protein RAB 49.3 7.4 0.00025 34.1 2.2 15 2-16 14-28 (168)
475 2axn_A 6-phosphofructo-2-kinas 49.3 7.4 0.00025 42.0 2.5 18 1-18 43-60 (520)
476 3zvl_A Bifunctional polynucleo 49.0 5.1 0.00017 41.9 1.2 17 1-17 266-282 (416)
477 3d3q_A TRNA delta(2)-isopenten 48.8 7.7 0.00026 39.0 2.4 16 2-17 16-31 (340)
478 2zej_A Dardarin, leucine-rich 48.8 6 0.00021 35.7 1.5 15 2-16 11-25 (184)
479 2wji_A Ferrous iron transport 48.5 7.4 0.00025 34.3 2.0 15 2-16 12-26 (165)
480 1g8p_A Magnesium-chelatase 38 48.4 4.3 0.00015 41.2 0.5 17 2-18 54-70 (350)
481 1s96_A Guanylate kinase, GMP k 48.0 7.9 0.00027 36.3 2.2 17 2-18 25-41 (219)
482 2v3c_C SRP54, signal recogniti 47.8 6.2 0.00021 41.4 1.6 29 2-32 108-136 (432)
483 4akg_A Glutathione S-transfera 47.7 27 0.00092 45.5 7.5 73 2-84 1276-1348(2695)
484 1r8s_A ADP-ribosylation factor 47.1 9 0.00031 33.4 2.4 16 2-17 9-24 (164)
485 2eyu_A Twitching motility prot 47.1 15 0.0005 35.5 4.0 105 2-119 34-141 (261)
486 1u8z_A RAS-related protein RAL 46.5 8.7 0.0003 33.5 2.2 16 2-17 13-28 (168)
487 3nbx_X ATPase RAVA; AAA+ ATPas 46.4 5.4 0.00019 42.7 0.9 17 2-18 50-66 (500)
488 1q3t_A Cytidylate kinase; nucl 46.1 9.4 0.00032 36.2 2.5 17 1-17 24-40 (236)
489 1tf7_A KAIC; homohexamer, hexa 46.0 25 0.00084 38.0 6.1 29 2-32 290-318 (525)
490 3upu_A ATP-dependent DNA helic 45.9 15 0.00052 38.9 4.3 28 2-30 54-81 (459)
491 3tqf_A HPR(Ser) kinase; transf 45.8 8.2 0.00028 34.4 1.8 15 2-16 25-39 (181)
492 2og2_A Putative signal recogni 45.6 11 0.00037 38.4 2.9 18 2-19 166-183 (359)
493 2onk_A Molybdate/tungstate ABC 45.2 8.3 0.00028 36.7 1.9 16 2-17 33-48 (240)
494 1m7b_A RND3/RHOE small GTP-bin 44.9 9.5 0.00032 34.2 2.2 16 2-17 16-31 (184)
495 1p6x_A Thymidine kinase; P-loo 44.8 8.3 0.00028 38.7 1.9 16 3-18 17-32 (334)
496 2wjg_A FEOB, ferrous iron tran 44.8 8.9 0.00031 34.4 2.0 15 2-16 16-30 (188)
497 2h92_A Cytidylate kinase; ross 44.7 10 0.00035 35.2 2.5 17 1-17 11-27 (219)
498 1x6v_B Bifunctional 3'-phospho 44.7 9.5 0.00032 41.9 2.5 18 1-18 60-77 (630)
499 3ihw_A Centg3; RAS, centaurin, 44.5 9.7 0.00033 34.3 2.2 16 2-17 29-44 (184)
500 2qmh_A HPR kinase/phosphorylas 44.4 6.2 0.00021 36.2 0.8 16 2-17 43-58 (205)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.8e-41 Score=378.88 Aligned_cols=264 Identities=13% Similarity=0.101 Sum_probs=200.6
Q ss_pred CCCCcHHHHHHHHHH--HHhhhcCCCeEEEEEecCCC--CHHHHHHHHHHHhCcccc--------chhhHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVAR--QAMEDKLFDMVVFSEVSQIP--DIKRIQQEIAEKLGLELR--------EEVESSRASRIFERL 68 (760)
Q Consensus 1 mgGiGKTtLA~~~~~--~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~--------~~~~~~~~~~~~~~l 68 (760)
||||||||||+++|+ +.+++.+|++++||++++.+ +...+++.|+++++.... ..+.......+.+.+
T Consensus 160 ~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L 239 (549)
T 2a5y_B 160 RAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNAL 239 (549)
T ss_dssp STTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHH
Confidence 899999999999999 56778899999999999885 889999999999986521 112233467788888
Q ss_pred HcCCcEEEEEECCCCccccccccccccCCCCCcEEEEeeCCH--------------------HHHHHHHHHHhCCCcCCh
Q 048566 69 RNEKKILVVLDNIWKHLDLETVGIPFGEDHKGCKLLLTARDR--------------------KEAWRLFKMMVGDDVENR 128 (760)
Q Consensus 69 ~~~~r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IlvTTR~~--------------------~~a~~Lf~~~a~~~~~~~ 128 (760)
...|||||||||||+.+++ . ++ ..+||+||||||++ ++||+||.++|+....++
T Consensus 240 ~~~kr~LlVLDdv~~~~~~-~----~~-~~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 313 (549)
T 2a5y_B 240 IDRPNTLFVFDDVVQEETI-R----WA-QELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGE 313 (549)
T ss_dssp TTSTTEEEEEEEECCHHHH-H----HH-HHTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--C
T ss_pred cCCCcEEEEEECCCCchhh-c----cc-ccCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCch
Confidence 7423999999999998765 1 11 12799999999996 899999999986544447
Q ss_pred hhHHHHHHHHHHhCCcchHHHHHHHHHccCChHHHHHHHHH-hcCCCCCCcCCchhHHHHHHHHhhhcCChhhHhHHHh-
Q 048566 129 ELKSTAIDVARACGGLPIALTTVAMALRSKSLHGWKVSLGE-LRTPSMDNFEGVSAETYSSIELSFNHLKDEQLKKIFL- 206 (760)
Q Consensus 129 ~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~w~~~l~~-l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl- 206 (760)
++++++++|+++|+|+||||+++|+.++.+.. +|...+.. +.... ...+.+++.+||++||.+ +|.||+
T Consensus 314 ~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~-------~~~i~~~l~~Sy~~L~~~-lk~~f~~ 384 (549)
T 2a5y_B 314 KEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRG-------LVGVECITPYSYKSLAMA-LQRCVEV 384 (549)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHC-------SSTTCCCSSSSSSSHHHH-HHHHHHT
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhccc-------HHHHHHHHhcccccccHH-HHHHHhc
Confidence 78889999999999999999999999987642 23233322 21111 233666888999999888 799999
Q ss_pred ----------hhccCcccccHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHHhccccccc---CCCceeccHHHH
Q 048566 207 ----------LCSQMETRILTLDLFKYSMGL--GIFKRVNKMEDARDKLYALVHELRNSCLLIED---SNEQFSMHDVVR 271 (760)
Q Consensus 207 ----------~~a~fp~~~~~~~li~~w~a~--g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~---~~~~~~mH~lv~ 271 (760)
|||+||+++.+. ++.|+|+ ||+.........++.+. ++++|+++||++.. ....|+|||+||
T Consensus 385 Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~ 461 (549)
T 2a5y_B 385 LSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIH 461 (549)
T ss_dssp SCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHH
T ss_pred cchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHH
Confidence 999999998887 8999999 99975431122334444 89999999999876 235799999999
Q ss_pred HHHHHHhhccc
Q 048566 272 DVAISIGCRDQ 282 (760)
Q Consensus 272 ~~~~~~~~~e~ 282 (760)
+||++++.+++
T Consensus 462 ~~a~~~~~~~~ 472 (549)
T 2a5y_B 462 MFLKHVVDAQT 472 (549)
T ss_dssp HHHHTTSCTHH
T ss_pred HHHHHHHHHHH
Confidence 99998887654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.1e-32 Score=309.72 Aligned_cols=233 Identities=18% Similarity=0.172 Sum_probs=183.6
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCe-EEEEEecCCCCHHHHHHHHHHHhCccc---c---------chhhHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDM-VVFSEVSQIPDIKRIQQEIAEKLGLEL---R---------EEVESSRASRIFER 67 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~---~---------~~~~~~~~~~~~~~ 67 (760)
|||+||||||+++|++.+++.+|+. ++|+++++.++...++..|++.++... . ....+.....+.+.
T Consensus 158 mGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~l 237 (1221)
T 1vt4_I 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237 (1221)
T ss_dssp STTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCcccccccccccCCCCCHHHHHHHHHHH
Confidence 8999999999999998777788986 999999999998888888877543211 0 01122334555555
Q ss_pred HH--cCCcEEEEEECCCCccccccccccccCCCCCcEEEEeeCCH-------------------------HHHHHHHHHH
Q 048566 68 LR--NEKKILVVLDNIWKHLDLETVGIPFGEDHKGCKLLLTARDR-------------------------KEAWRLFKMM 120 (760)
Q Consensus 68 l~--~~~r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IlvTTR~~-------------------------~~a~~Lf~~~ 120 (760)
+. .++|+||||||||+.++|+.+ + +|||||||||++ +||++||+++
T Consensus 238 L~~l~~KRvLLVLDDVwd~eqLe~f----~---pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~ 310 (1221)
T 1vt4_I 238 LKSKPYENCLLVLLNVQNAKAWNAF----N---LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310 (1221)
T ss_dssp HHHSTTSSCEEEEESCCCHHHHHHH----H---SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHH
T ss_pred HHhhcCCCEEEEEeCcChHHHHHhh----C---CCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHH
Confidence 52 369999999999998888765 2 689999999986 5899999988
Q ss_pred hCCCcCChhhHHHHHHHHHHhCCcchHHHHHHHHHccC--ChHHHHHHHHHhcCCCCCCcCCchhHHHHHHHHhhhcCCh
Q 048566 121 VGDDVENRELKSTAIDVARACGGLPIALTTVAMALRSK--SLHGWKVSLGELRTPSMDNFEGVSAETYSSIELSFNHLKD 198 (760)
Q Consensus 121 a~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~--~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~ 198 (760)
.+.. ..+++.++ |+|+||||+++|+.|+.+ +...|+.. . ...+..++.+||+.||+
T Consensus 311 ~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~----------~----~~~I~aaLelSYd~Lp~ 368 (1221)
T 1vt4_I 311 LDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV----------N----CDKLTTIIESSLNVLEP 368 (1221)
T ss_dssp HCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC----------S----CHHHHHHHHHHHHHSCT
T ss_pred cCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC----------C----hhHHHHHHHHHHHhCCH
Confidence 6432 12333333 999999999999999988 67788752 1 46799999999999999
Q ss_pred hhH-hHHHhhhccCcccccHH--HHHHHHHhcCccccccchHHHHHHHHHHHHHHHhccccccc-CCCceeccHHHHHHH
Q 048566 199 EQL-KKIFLLCSQMETRILTL--DLFKYSMGLGIFKRVNKMEDARDKLYALVHELRNSCLLIED-SNEQFSMHDVVRDVA 274 (760)
Q Consensus 199 ~~l-k~cfl~~a~fp~~~~~~--~li~~w~a~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~-~~~~~~mH~lv~~~~ 274 (760)
+ . |+||++||+||+++.+. .++..|.++|. +.+.+++++|+++||++.. ...+|+||+++++++
T Consensus 369 e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-----------edAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 369 A-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-----------SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp T-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-----------HHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred H-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-----------HHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 8 6 99999999999887654 78899998871 1355679999999999986 457899999999865
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=1.7e-31 Score=331.35 Aligned_cols=258 Identities=18% Similarity=0.307 Sum_probs=200.5
Q ss_pred CCCCcHHHHHHHHHHHHhh-hc-CCCeEEEEEecCCC--CHHHHHHHHHHHhCcccc-----chhhHHHHHHHHHHHHc-
Q 048566 1 MGGIGKTTLVKKVARQAME-DK-LFDMVVFSEVSQIP--DIKRIQQEIAEKLGLELR-----EEVESSRASRIFERLRN- 70 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~-~~-~F~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~l~~- 70 (760)
|||+||||||+++|++.+. +. +|+.++||++++.. +....++.++..+..... .....+....++..+..
T Consensus 155 ~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 234 (1249)
T 3sfz_A 155 MAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRK 234 (1249)
T ss_dssp STTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSS
T ss_pred CCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhcc
Confidence 8999999999999998643 34 44789999999854 345557778887765432 12334455566666653
Q ss_pred CCcEEEEEECCCCccccccccccccCCCCCcEEEEeeCCH---------------------HHHHHHHHHHhCCCcCChh
Q 048566 71 EKKILVVLDNIWKHLDLETVGIPFGEDHKGCKLLLTARDR---------------------KEAWRLFKMMVGDDVENRE 129 (760)
Q Consensus 71 ~~r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IlvTTR~~---------------------~~a~~Lf~~~a~~~~~~~~ 129 (760)
++||||||||||+.++|+.+ ++||+||||||++ ++|++||...++. ..++
T Consensus 235 ~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~--~~~~ 305 (1249)
T 3sfz_A 235 HPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNM--KKED 305 (1249)
T ss_dssp SCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTS--CSTT
T ss_pred CCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCC--Chhh
Confidence 24999999999998877754 5789999999987 8999999998843 2345
Q ss_pred hHHHHHHHHHHhCCcchHHHHHHHHHccCChHHHHHHHHHhcCCCCCCc----CCchhHHHHHHHHhhhcCChhhHhHHH
Q 048566 130 LKSTAIDVARACGGLPIALTTVAMALRSKSLHGWKVSLGELRTPSMDNF----EGVSAETYSSIELSFNHLKDEQLKKIF 205 (760)
Q Consensus 130 ~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~----~~~~~~~~~~l~~sy~~L~~~~lk~cf 205 (760)
.++.+++|+++|+|+||||+++|++|+.+. ..|..+++.+........ ......+.+++.+||+.|+++ .|.||
T Consensus 306 ~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~ 383 (1249)
T 3sfz_A 306 LPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYY 383 (1249)
T ss_dssp CCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHH
T ss_pred CcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHH-HHHHH
Confidence 567799999999999999999999999875 479998888755432221 122357999999999999999 69999
Q ss_pred hhhccCcccccHH--HHHHHHHhcCccccccchHHHHHHHHHHHHHHHhcccccccCCC---ceeccHHHHHHHHHHhhc
Q 048566 206 LLCSQMETRILTL--DLFKYSMGLGIFKRVNKMEDARDKLYALVHELRNSCLLIEDSNE---QFSMHDVVRDVAISIGCR 280 (760)
Q Consensus 206 l~~a~fp~~~~~~--~li~~w~a~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~---~~~mH~lv~~~~~~~~~~ 280 (760)
+|||+||+++.+. .++..|.+++ +.+.+++++|+++||++....+ +|+||++||+++++.+.+
T Consensus 384 ~~l~~f~~~~~i~~~~~~~~~~~~~------------~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 384 TDLSILQKDVKVPTKVLCVLWDLET------------EEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp HHGGGSCTTCCEEHHHHHHHHTCCH------------HHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGG
T ss_pred HHhCccCCCCeeCHHHHHHHhCCCH------------HHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhH
Confidence 9999999887654 8889996542 3456679999999999976444 499999999999988665
Q ss_pred c
Q 048566 281 D 281 (760)
Q Consensus 281 e 281 (760)
+
T Consensus 452 ~ 452 (1249)
T 3sfz_A 452 Q 452 (1249)
T ss_dssp G
T ss_pred H
Confidence 4
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.96 E-value=7e-29 Score=281.78 Aligned_cols=254 Identities=18% Similarity=0.320 Sum_probs=190.5
Q ss_pred CCCCcHHHHHHHHHHHHhh-hcCC-CeEEEEEecCCCCHHHHHH---HHHHHhCcc-----ccchhhHHHHHHHHHHHHc
Q 048566 1 MGGIGKTTLVKKVARQAME-DKLF-DMVVFSEVSQIPDIKRIQQ---EIAEKLGLE-----LREEVESSRASRIFERLRN 70 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~-~~~F-~~~~wv~~~~~~~~~~~~~---~i~~~l~~~-----~~~~~~~~~~~~~~~~l~~ 70 (760)
|||+||||||+++|++..+ +.+| ++++|++++... ...+.. .++..++.. ............+.+.+..
T Consensus 155 ~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~-~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 233 (591)
T 1z6t_A 155 MAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD-KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLR 233 (591)
T ss_dssp CTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC-HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc-hHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHcc
Confidence 7999999999999988755 5779 589999998763 333333 344455421 1122334455666766653
Q ss_pred -CCcEEEEEECCCCccccccccccccCCCCCcEEEEeeCCH---------------------HHHHHHHHHHhCCCcCCh
Q 048566 71 -EKKILVVLDNIWKHLDLETVGIPFGEDHKGCKLLLTARDR---------------------KEAWRLFKMMVGDDVENR 128 (760)
Q Consensus 71 -~~r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IlvTTR~~---------------------~~a~~Lf~~~a~~~~~~~ 128 (760)
.+++||||||||+..+++.+ ++|++||||||+. +||++||...++.. ..
T Consensus 234 ~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~ 304 (591)
T 1z6t_A 234 KHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMK--KA 304 (591)
T ss_dssp TCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCCSCEEEEECCSSCCHHHHHHHHHHHHTSC--GG
T ss_pred CCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhcCCCceEeecCCCCCHHHHHHHHHHHhCCC--cc
Confidence 27999999999987766533 5689999999987 89999999998542 23
Q ss_pred hhHHHHHHHHHHhCCcchHHHHHHHHHccCChHHHHHHHHHhcCCCCCCc----CCchhHHHHHHHHhhhcCChhhHhHH
Q 048566 129 ELKSTAIDVARACGGLPIALTTVAMALRSKSLHGWKVSLGELRTPSMDNF----EGVSAETYSSIELSFNHLKDEQLKKI 204 (760)
Q Consensus 129 ~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~----~~~~~~~~~~l~~sy~~L~~~~lk~c 204 (760)
...+.+.+|+++|+|+||||.++|++++... ..|..+++.+........ ......+..++..||+.||++ .+.|
T Consensus 305 ~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~ 382 (591)
T 1z6t_A 305 DLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDY 382 (591)
T ss_dssp GSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHH
T ss_pred cccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHH-HHHH
Confidence 3356789999999999999999999998873 379988888765432211 122457999999999999998 6999
Q ss_pred HhhhccCcccccH--HHHHHHHHhcCccccccchHHHHHHHHHHHHHHHhcccccccC---CCceeccHHHHHHHHHHh
Q 048566 205 FLLCSQMETRILT--LDLFKYSMGLGIFKRVNKMEDARDKLYALVHELRNSCLLIEDS---NEQFSMHDVVRDVAISIG 278 (760)
Q Consensus 205 fl~~a~fp~~~~~--~~li~~w~a~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~---~~~~~mH~lv~~~~~~~~ 278 (760)
|+++|+||.++.+ ..+...|.+++ +.+.+++++|+++||++... ..+|+||++++++++...
T Consensus 383 l~~la~f~~~~~i~~~~l~~l~~~~~------------~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 383 YTDLSILQKDVKVPTKVLCILWDMET------------EEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHGGGCCTTCCEEHHHHHHHHTCCH------------HHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHccccCCCCccCHHHHHHHhccCH------------HHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 9999999987655 46777785431 23456799999999998652 247999999999999874
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=7.7e-25 Score=249.95 Aligned_cols=228 Identities=20% Similarity=0.232 Sum_probs=161.2
Q ss_pred EEecCCccccccchhccccceEEEeecCCCCCCCC--CCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCC
Q 048566 285 ILVGNEDVWDWRNEDALRKCKAITLRYDSNRHFPE--GLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQ 362 (760)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~ 362 (760)
+...+..+..+|. ..++.++.+.+.++....+++ ..++++|++|+++ ++.+. .++...|.++++|++|++++|.
T Consensus 16 ~~c~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls--~n~l~-~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 16 YQCMDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLS--RCEIE-TIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp EECTTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT--TCCCC-EECTTTTTTCTTCCEEECTTCC
T ss_pred eEccCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCC--CCccc-ccCHHHhhchhhcCEeECCCCc
Confidence 3344444555553 456889999999666566665 4489999999999 45555 3656667999999999999999
Q ss_pred CCCC-hhhhhhhccCCeeEecCCCCCC-c-cccccccccceeecccCccc--ccchhhhcCCCCCEEeccccccccccCc
Q 048566 363 FSSF-PSSIDLLVNLHTLCLDQSALGD-I-AIIGKLKNLEVLSFLMSDIM--QLPEELGQLNKLRLLDLTNCFHLKVIAP 437 (760)
Q Consensus 363 ~~~l-p~~i~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~l~~~~~ 437 (760)
+..+ |..++++++|++|++++|.+.. + ..++++.+|++|++++|.+. .+|..++++++|++|++++| .+..+++
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~ 170 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITV 170 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECT
T ss_pred ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecCh
Confidence 9977 8889999999999999999877 3 67999999999999999987 47899999999999999998 5666655
Q ss_pred ccccCCC---------------------------CCCEEEccccccchhhhhc---------------------------
Q 048566 438 NLISSLT---------------------------RLEELYMGNCFIEWEVERA--------------------------- 463 (760)
Q Consensus 438 ~~i~~l~---------------------------~L~~L~l~~~~~~~~~~~~--------------------------- 463 (760)
..++.++ +|++|++++|...+.....
T Consensus 171 ~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~ 250 (606)
T 3vq2_A 171 NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250 (606)
T ss_dssp TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred hhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCccccc
Confidence 4344433 4555555555432110000
Q ss_pred -------------------cccccCCChhhhcCCCCCCEEEEEeccCCCCCcchhccccceeEEEecCCCCCC
Q 048566 464 -------------------NSKRSNASLDELMHLPRLTTLEIDVKNDSILPEGFLARKLERFKISIGNESFMP 517 (760)
Q Consensus 464 -------------------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~ 517 (760)
........+..+..+++|+.|+++++....++....+++|+.|+++.|....+|
T Consensus 251 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp 323 (606)
T 3vq2_A 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFP 323 (606)
T ss_dssp CGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCC
T ss_pred ChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccc
Confidence 000000111225566778888888777777774445678888888887765554
No 6
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=1.1e-24 Score=246.99 Aligned_cols=402 Identities=16% Similarity=0.144 Sum_probs=239.0
Q ss_pred cCCccccccchhccccceEEEeecCCCCCCCC--CCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCC
Q 048566 288 GNEDVWDWRNEDALRKCKAITLRYDSNRHFPE--GLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSS 365 (760)
Q Consensus 288 ~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~ 365 (760)
.+.....+|. ..++.++++.+.++....++. ..++++|++|+++ ++.+. .++...|.++++|++|++++|.+..
T Consensus 15 ~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls--~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~ 90 (570)
T 2z63_A 15 MELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS--RCEIQ-TIEDGAYQSLSHLSTLILTGNPIQS 90 (570)
T ss_dssp CSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECT--TCCCC-EECTTTTTTCTTCCEEECTTCCCCE
T ss_pred CCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECC--CCcCC-ccCcccccCchhCCEEeCcCCcCCc
Confidence 3334444453 456789999998665566653 4589999999999 44555 4666778999999999999999987
Q ss_pred Ch-hhhhhhccCCeeEecCCCCCCc--cccccccccceeecccCcccc--cchhhhcCCCCCEEeccccccccccCcccc
Q 048566 366 FP-SSIDLLVNLHTLCLDQSALGDI--AIIGKLKNLEVLSFLMSDIMQ--LPEELGQLNKLRLLDLTNCFHLKVIAPNLI 440 (760)
Q Consensus 366 lp-~~i~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i 440 (760)
+| ..++.+.+|++|++++|.+... ..++++++|++|++++|.+.. +|..++++++|++|++++| .+..+++..+
T Consensus 91 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~ 169 (570)
T 2z63_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDL 169 (570)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGG
T ss_pred cCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHc
Confidence 75 7899999999999999998873 258999999999999998885 6899999999999999998 6777776667
Q ss_pred cCCCCC----CEEEccccccchhhhhccc---------------------------------------------------
Q 048566 441 SSLTRL----EELYMGNCFIEWEVERANS--------------------------------------------------- 465 (760)
Q Consensus 441 ~~l~~L----~~L~l~~~~~~~~~~~~~~--------------------------------------------------- 465 (760)
+.+++| +.|++++|.+....+....
T Consensus 170 ~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~ 249 (570)
T 2z63_A 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249 (570)
T ss_dssp HHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTT
T ss_pred cchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchh
Confidence 777777 6777777654321110000
Q ss_pred -------------------cccCCChhhhcCCCCCCEEEEEeccCCCCCcchhccccceeEEEecCCCCCCCcccccccc
Q 048566 466 -------------------KRSNASLDELMHLPRLTTLEIDVKNDSILPEGFLARKLERFKISIGNESFMPPKCVRQDWF 526 (760)
Q Consensus 466 -------------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~ 526 (760)
......+..+..+++|+.|+++++....+|......+|+.|+++.|....+|... .
T Consensus 250 ~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~-----l 324 (570)
T 2z63_A 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK-----L 324 (570)
T ss_dssp TTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCB-----C
T ss_pred hhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCccc-----c
Confidence 1112233455667888888888877666666553337888888877766554310 0
Q ss_pred CCCCcc----------cccccccccceeeeccCccccc---cccccCccceeEEEeccccCccccccccCccccCCCcEE
Q 048566 527 QSQPHF----------SINSDRKSLRALKLKLDFMDIC---SMKLQGINNVECLWLDKLQGIGDVLFNLDTEGFSQLKLL 593 (760)
Q Consensus 527 ~~~~~~----------~~~~~~~~l~~l~l~~~~~~l~---~l~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L 593 (760)
.....+ ......++++.+++..+...-. ...+..+++|+.|.+.++...... .. ...+++|+.|
T Consensus 325 ~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~--~~~l~~L~~L 401 (570)
T 2z63_A 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SN--FLGLEQLEHL 401 (570)
T ss_dssp SSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEE-EE--EETCTTCCEE
T ss_pred cccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccc-cc--ccccCCCCEE
Confidence 000000 0002334455555544331110 011233455555555544321111 11 2345556666
Q ss_pred eeccCCCceeeecCCCCcccccccccchhhhcccccccccccccccccccCCccEEEEecCCCC-CcccchhhhhccCCC
Q 048566 594 WVQNNPDIFCIVDSREMVACDAFPLLESLILHNLINMERVCIDRLKVESFNQLKNIEAYNCDKL-SNIFWLSTTKCLPRL 672 (760)
Q Consensus 594 ~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L-~~l~~~~~~~~l~~L 672 (760)
++++|. +..++ .......+++|++|+++++.-....+. ....+++|+.|++.+|.-. ..+| ..+..+++|
T Consensus 402 ~l~~n~-l~~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~p--~~~~~l~~L 472 (570)
T 2z63_A 402 DFQHSN-LKQMS---EFSVFLSLRNLIYLDISHTHTRVAFNG---IFNGLSSLEVLKMAGNSFQENFLP--DIFTELRNL 472 (570)
T ss_dssp ECTTSE-EESCT---TSCTTTTCTTCCEEECTTSCCEECCTT---TTTTCTTCCEEECTTCEEGGGEEC--SCCTTCTTC
T ss_pred EccCCc-ccccc---chhhhhcCCCCCEEeCcCCcccccchh---hhhcCCcCcEEECcCCcCccccch--hhhhcccCC
Confidence 665542 11110 001233455666666665532221111 2334566666666665422 1222 244556666
Q ss_pred cEEEEecCCcchhhhccccccccccccccccccCeeecCCCcccccccc
Q 048566 673 ERIAVVNCSKMKEIFAIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCR 721 (760)
Q Consensus 673 ~~L~l~~c~~L~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~ 721 (760)
++|++++| .++.++. ..+..+++|++|++++| +++.++.
T Consensus 473 ~~L~l~~n-~l~~~~~--------~~~~~l~~L~~L~l~~n-~l~~~~~ 511 (570)
T 2z63_A 473 TFLDLSQC-QLEQLSP--------TAFNSLSSLQVLNMASN-QLKSVPD 511 (570)
T ss_dssp CEEECTTS-CCCEECT--------TTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred CEEECCCC-ccccCCh--------hhhhcccCCCEEeCCCC-cCCCCCH
Confidence 66666666 3333321 14455667777777766 4555543
No 7
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=2.9e-24 Score=236.35 Aligned_cols=345 Identities=19% Similarity=0.218 Sum_probs=269.5
Q ss_pred cccceEEEeecCCCCCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeE
Q 048566 301 LRKCKAITLRYDSNRHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLC 380 (760)
Q Consensus 301 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~ 380 (760)
.+.++.+.+.......++....+++|++|+++ ++.+. .++. +.++++|++|++++|.+..++. ++++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls--~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFS--NNQLT-DITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECC--SSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECC--CCccC-Cchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence 56789999886555778877789999999999 45555 3544 6899999999999999998887 99999999999
Q ss_pred ecCCCCCCccccccccccceeecccCcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhh
Q 048566 381 LDQSALGDIAIIGKLKNLEVLSFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEV 460 (760)
Q Consensus 381 l~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~ 460 (760)
+++|.+...+.++++++|++|++++|.+..+| .++.+++|++|++.+ .+...++ ++++++|++|++++|.+.
T Consensus 119 L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~--~~~~~~~--~~~l~~L~~L~l~~n~l~--- 190 (466)
T 1o6v_A 119 LFNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDISSNKVS--- 190 (466)
T ss_dssp CCSSCCCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE--SCCCCGG--GTTCTTCCEEECCSSCCC---
T ss_pred CCCCCCCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC--cccCchh--hccCCCCCEEECcCCcCC---
Confidence 99999988666999999999999999998887 489999999999975 4555554 889999999999999764
Q ss_pred hhccccccCCChhhhcCCCCCCEEEEEeccCCCCCcchhccccceeEEEecCCCCCCCccccccccCCCCcccccccccc
Q 048566 461 ERANSKRSNASLDELMHLPRLTTLEIDVKNDSILPEGFLARKLERFKISIGNESFMPPKCVRQDWFQSQPHFSINSDRKS 540 (760)
Q Consensus 461 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 540 (760)
.+..+..+++|+.|+++++.....+....+++|+.|+++.|.+..++. ....++
T Consensus 191 ----------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~----------------l~~l~~ 244 (466)
T 1o6v_A 191 ----------DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT----------------LASLTN 244 (466)
T ss_dssp ----------CCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG----------------GGGCTT
T ss_pred ----------CChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchh----------------hhcCCC
Confidence 134578899999999999988777766677999999999887655421 134567
Q ss_pred cceeeeccCccccccc-cccCccceeEEEeccccCccccccccCccccCCCcEEeeccCCCceeeecCCCCccccccccc
Q 048566 541 LRALKLKLDFMDICSM-KLQGINNVECLWLDKLQGIGDVLFNLDTEGFSQLKLLWVQNNPDIFCIVDSREMVACDAFPLL 619 (760)
Q Consensus 541 l~~l~l~~~~~~l~~l-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L 619 (760)
++.|.+..+.. ..+ .+..+++|+.|.+.++.-.. . .....+++|+.|++++|. ++.++ ....+++|
T Consensus 245 L~~L~l~~n~l--~~~~~~~~l~~L~~L~l~~n~l~~-~---~~~~~l~~L~~L~L~~n~-l~~~~------~~~~l~~L 311 (466)
T 1o6v_A 245 LTDLDLANNQI--SNLAPLSGLTKLTELKLGANQISN-I---SPLAGLTALTNLELNENQ-LEDIS------PISNLKNL 311 (466)
T ss_dssp CSEEECCSSCC--CCCGGGTTCTTCSEEECCSSCCCC-C---GGGTTCTTCSEEECCSSC-CSCCG------GGGGCTTC
T ss_pred CCEEECCCCcc--ccchhhhcCCCCCEEECCCCccCc-c---ccccCCCccCeEEcCCCc-ccCch------hhcCCCCC
Confidence 88888876653 221 15667889999888764322 1 124669999999999874 44332 35678999
Q ss_pred chhhhcccccccccccccccccccCCccEEEEecCCCCCcccchhhhhccCCCcEEEEecCCcchhhhcccccccccccc
Q 048566 620 ESLILHNLINMERVCIDRLKVESFNQLKNIEAYNCDKLSNIFWLSTTKCLPRLERIAVVNCSKMKEIFAIGEEVDNAIEK 699 (760)
Q Consensus 620 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~ 699 (760)
+.|+++++. +..+. +...+++|+.|++.+| +++.++ .+..+++|++|++++|. +..++ .+
T Consensus 312 ~~L~L~~n~-l~~~~----~~~~l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n~-l~~~~----------~~ 371 (466)
T 1o6v_A 312 TYLTLYFNN-ISDIS----PVSSLTKLQRLFFYNN-KVSDVS---SLANLTNINWLSAGHNQ-ISDLT----------PL 371 (466)
T ss_dssp SEEECCSSC-CSCCG----GGGGCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSSC-CCBCG----------GG
T ss_pred CEEECcCCc-CCCch----hhccCccCCEeECCCC-ccCCch---hhccCCCCCEEeCCCCc-cCccc----------hh
Confidence 999999874 44443 3567999999999998 666663 57889999999999994 55544 35
Q ss_pred ccccccCeeecCCCcccccc
Q 048566 700 IEFAQLRSLSLGNLPEVTSF 719 (760)
Q Consensus 700 ~~l~~L~~L~l~~c~~L~~~ 719 (760)
..+++|+.|++.+|+ +..+
T Consensus 372 ~~l~~L~~L~l~~n~-~~~~ 390 (466)
T 1o6v_A 372 ANLTRITQLGLNDQA-WTNA 390 (466)
T ss_dssp TTCTTCCEEECCCEE-EECC
T ss_pred hcCCCCCEEeccCCc-ccCC
Confidence 678999999999985 4443
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=1.1e-24 Score=252.41 Aligned_cols=162 Identities=17% Similarity=0.235 Sum_probs=134.2
Q ss_pred CCchhhcCCCCceEEEecCCCCCC------------------Chhhhh--hhccCCeeEecCCCCCC--ccccccccccc
Q 048566 342 IPGNFFIGMKKLRVLDFTRMQFSS------------------FPSSID--LLVNLHTLCLDQSALGD--IAIIGKLKNLE 399 (760)
Q Consensus 342 ~~~~~~~~l~~Lr~L~l~~~~~~~------------------lp~~i~--~l~~L~~L~l~~~~l~~--~~~~~~l~~L~ 399 (760)
+|.. |.++++|++|+|++|.+.. +|..++ ++++|++|++++|.+.. |..++++++|+
T Consensus 440 IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 6654 5889999999999999987 899987 99999999999998654 77899999999
Q ss_pred eeecccCc-ccc--cchhhhcCC-------CCCEEeccccccccccCc-ccccCCCCCCEEEccccccchhhhhcccccc
Q 048566 400 VLSFLMSD-IMQ--LPEELGQLN-------KLRLLDLTNCFHLKVIAP-NLISSLTRLEELYMGNCFIEWEVERANSKRS 468 (760)
Q Consensus 400 ~L~l~~~~-i~~--lp~~~~~l~-------~L~~L~l~~~~~l~~~~~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 468 (760)
+|++++|+ +.. +|..+++++ +|++|++++| .+..+|. ..++++++|++|++++|.+. .+
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~l-------- 588 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVR-HL-------- 588 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCCC-BC--------
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCcc-cc--------
Confidence 99999997 874 888888776 9999999998 6778876 24899999999999999764 22
Q ss_pred CCChhhhcCCCCCCEEEEEeccCCCCCcch-hccc-cceeEEEecCCCCCCC
Q 048566 469 NASLDELMHLPRLTTLEIDVKNDSILPEGF-LARK-LERFKISIGNESFMPP 518 (760)
Q Consensus 469 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~-L~~L~l~~~~~~~l~~ 518 (760)
+ .++.+++|+.|+++++....+|... .+++ |+.|+++.|.+..+|.
T Consensus 589 ---p-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~ 636 (876)
T 4ecn_A 589 ---E-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPN 636 (876)
T ss_dssp ---C-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCS
T ss_pred ---h-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCch
Confidence 3 6788889999999988877777554 4467 9999999888776653
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=5.2e-24 Score=225.07 Aligned_cols=303 Identities=18% Similarity=0.240 Sum_probs=179.7
Q ss_pred CCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCCcccccccccccee
Q 048566 322 ECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGDIAIIGKLKNLEVL 401 (760)
Q Consensus 322 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L 401 (760)
.+++|+.|++.+ +.+. .++. +..+++|++|++++|.+..++. +..+++|++|++++|.+..++.+.++++|++|
T Consensus 42 ~l~~L~~L~l~~--~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAG--EKVA-SIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCS--SCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred hcccccEEEEeC--Cccc-cchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEE
Confidence 345555555552 2222 2332 4556666666666666666655 66666666666666666665556666666666
Q ss_pred ecccCcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCC
Q 048566 402 SFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRL 481 (760)
Q Consensus 402 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 481 (760)
++++|.+..+|. +..+++|++|++++|..+...+. +..+++|++|++++|.+.. ...+..+++|
T Consensus 116 ~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~-------------~~~~~~l~~L 179 (347)
T 4fmz_A 116 YLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKD-------------VTPIANLTDL 179 (347)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCC-------------CGGGGGCTTC
T ss_pred ECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCC-------------chhhccCCCC
Confidence 666666666654 56666666666666644444333 5666666666666665431 1125556666
Q ss_pred CEEEEEeccCCCCCcchhccccceeEEEecCCCCCCCccccccccCCCCcccccccccccceeeeccCccccccccccCc
Q 048566 482 TTLEIDVKNDSILPEGFLARKLERFKISIGNESFMPPKCVRQDWFQSQPHFSINSDRKSLRALKLKLDFMDICSMKLQGI 561 (760)
Q Consensus 482 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~l~~l~~~~l 561 (760)
+.|+++++....++....+++|+.|+++.|.....+. +..+
T Consensus 180 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~---------------------------------------~~~~ 220 (347)
T 4fmz_A 180 YSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP---------------------------------------VANM 220 (347)
T ss_dssp SEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG---------------------------------------GGGC
T ss_pred CEEEccCCcccccccccCCCccceeecccCCCCCCch---------------------------------------hhcC
Confidence 6666666655555544444556666555544222110 2223
Q ss_pred cceeEEEeccccCccccccccCccccCCCcEEeeccCCCceeeecCCCCcccccccccchhhhccccccccccccccccc
Q 048566 562 NNVECLWLDKLQGIGDVLFNLDTEGFSQLKLLWVQNNPDIFCIVDSREMVACDAFPLLESLILHNLINMERVCIDRLKVE 641 (760)
Q Consensus 562 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~ 641 (760)
++|+.|.+.++.-.. .. ....+++|++|++++| .+..+ .....+++|++|+++++ .++.++ ...
T Consensus 221 ~~L~~L~l~~n~l~~-~~---~~~~l~~L~~L~l~~n-~l~~~------~~~~~l~~L~~L~l~~n-~l~~~~----~~~ 284 (347)
T 4fmz_A 221 TRLNSLKIGNNKITD-LS---PLANLSQLTWLEIGTN-QISDI------NAVKDLTKLKMLNVGSN-QISDIS----VLN 284 (347)
T ss_dssp TTCCEEECCSSCCCC-CG---GGTTCTTCCEEECCSS-CCCCC------GGGTTCTTCCEEECCSS-CCCCCG----GGG
T ss_pred CcCCEEEccCCccCC-Cc---chhcCCCCCEEECCCC-ccCCC------hhHhcCCCcCEEEccCC-ccCCCh----hhc
Confidence 344444444432211 11 1345788888888876 33333 23556788888888876 444442 245
Q ss_pred ccCCccEEEEecCCCCCcccchhhhhccCCCcEEEEecCCcchhhhccccccccccccccccccCeeecCCCc
Q 048566 642 SFNQLKNIEAYNCDKLSNIFWLSTTKCLPRLERIAVVNCSKMKEIFAIGEEVDNAIEKIEFAQLRSLSLGNLP 714 (760)
Q Consensus 642 ~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 714 (760)
.+++|+.|++.+|. ++...+ ..+..+++|++|++++|+ ++.++ .+..+++|++|++.+|+
T Consensus 285 ~l~~L~~L~L~~n~-l~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~----------~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 285 NLSQLNSLFLNNNQ-LGNEDM-EVIGGLTNLTTLFLSQNH-ITDIR----------PLASLSKMDSADFANQV 344 (347)
T ss_dssp GCTTCSEEECCSSC-CCGGGH-HHHHTCTTCSEEECCSSS-CCCCG----------GGGGCTTCSEESSSCC-
T ss_pred CCCCCCEEECcCCc-CCCcCh-hHhhccccCCEEEccCCc-ccccc----------Chhhhhccceeehhhhc
Confidence 68899999999884 444432 467788999999999985 66654 35678899999999885
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=1.4e-24 Score=247.62 Aligned_cols=166 Identities=14% Similarity=0.225 Sum_probs=132.5
Q ss_pred cccccCCchhhcCCCCceEEEecCCCCCC------------------Chhhhh--hhccCCeeEecCCCCCC--cccccc
Q 048566 337 SLEINIPGNFFIGMKKLRVLDFTRMQFSS------------------FPSSID--LLVNLHTLCLDQSALGD--IAIIGK 394 (760)
Q Consensus 337 ~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~------------------lp~~i~--~l~~L~~L~l~~~~l~~--~~~~~~ 394 (760)
.+.+ +|.. |.++++|++|++++|.+.. +|..++ ++++|++|++++|.+.. |..+++
T Consensus 194 ~l~~-ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 194 NITF-VSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp EEEE-ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred CCcc-CCHH-HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 3444 6665 5889999999999999987 999988 99999999999998654 778999
Q ss_pred ccccceeecccCc-cc--ccchhhhcC------CCCCEEeccccccccccCc-ccccCCCCCCEEEccccccchhhhhcc
Q 048566 395 LKNLEVLSFLMSD-IM--QLPEELGQL------NKLRLLDLTNCFHLKVIAP-NLISSLTRLEELYMGNCFIEWEVERAN 464 (760)
Q Consensus 395 l~~L~~L~l~~~~-i~--~lp~~~~~l------~~L~~L~l~~~~~l~~~~~-~~i~~l~~L~~L~l~~~~~~~~~~~~~ 464 (760)
+++|++|++++|+ +. .+|..++.+ ++|++|++++| .+..+|. ..++++++|++|++++|.+.+.+
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~i---- 346 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGKL---- 346 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCEEEC----
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCccch----
Confidence 9999999999997 87 489888887 99999999998 6777776 24899999999999999876333
Q ss_pred ccccCCChhhhcCCCCCCEEEEEeccCCCCCcch-hccc-cceeEEEecCCCCCC
Q 048566 465 SKRSNASLDELMHLPRLTTLEIDVKNDSILPEGF-LARK-LERFKISIGNESFMP 517 (760)
Q Consensus 465 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~-L~~L~l~~~~~~~l~ 517 (760)
+ .++.+++|+.|+++++....+|... .+++ |+.|+++.|.+..+|
T Consensus 347 -------p-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp 393 (636)
T 4eco_A 347 -------P-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIP 393 (636)
T ss_dssp -------C-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCC
T ss_pred -------h-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccc
Confidence 2 5667777888888877766665543 3466 888888877766554
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=1.8e-24 Score=250.64 Aligned_cols=380 Identities=13% Similarity=0.139 Sum_probs=267.8
Q ss_pred CCCC-CCCCCccEEEeeccCCcccc-----------------cCCchh-hcCCCCceEEEecCCCCC-CChhhhhhhccC
Q 048566 317 FPEG-LECPNLEFLCISLKDSSLEI-----------------NIPGNF-FIGMKKLRVLDFTRMQFS-SFPSSIDLLVNL 376 (760)
Q Consensus 317 ~~~~-~~~~~Lr~L~l~~~~~~~~~-----------------~~~~~~-~~~l~~Lr~L~l~~~~~~-~lp~~i~~l~~L 376 (760)
+|.. .++++|++|+++ .+.+.+ .+|..+ |.++++|++|++++|.+. .+|..++++++|
T Consensus 440 IP~~l~~L~~L~~L~Ls--~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L 517 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFA--NSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPEL 517 (876)
T ss_dssp ECGGGGGCTTCCEEEEE--SCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSC
T ss_pred hhHHHhcCCCCCEEECc--CCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCC
Confidence 5554 478999999999 556665 278776 459999999999999865 789999999999
Q ss_pred CeeEecCCC-CCC---cccccccc-------ccceeecccCcccccch--hhhcCCCCCEEeccccccccccCcccccCC
Q 048566 377 HTLCLDQSA-LGD---IAIIGKLK-------NLEVLSFLMSDIMQLPE--ELGQLNKLRLLDLTNCFHLKVIAPNLISSL 443 (760)
Q Consensus 377 ~~L~l~~~~-l~~---~~~~~~l~-------~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l 443 (760)
++|++++|. +.. |..++++. +|++|++++|.+..+|. .++++++|+.|++++| .+..+| .++++
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp--~~~~L 594 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE--AFGTN 594 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC--CCCTT
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccch--hhcCC
Confidence 999999998 763 56677776 99999999999999998 8999999999999998 677787 48999
Q ss_pred CCCCEEEccccccchhhhhccccccCCChhhhcCCCC-CCEEEEEeccCCCCCcchhc---cccceeEEEecCCCCC-CC
Q 048566 444 TRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPR-LTTLEIDVKNDSILPEGFLA---RKLERFKISIGNESFM-PP 518 (760)
Q Consensus 444 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~l-~~ 518 (760)
++|++|++++|.+. ..+..+..+++ |+.|+++++....+|..... .+|+.|+++.|.+... |.
T Consensus 595 ~~L~~L~Ls~N~l~------------~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 595 VKLTDLKLDYNQIE------------EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp SEESEEECCSSCCS------------CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred CcceEEECcCCccc------------cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCcccc
Confidence 99999999999875 23556888888 99999999998888865533 3499999998886443 22
Q ss_pred ccccccccCCCCcccccccccccceeeeccCcccccccc---ccCccceeEEEeccccCccccccccC------ccccCC
Q 048566 519 KCVRQDWFQSQPHFSINSDRKSLRALKLKLDFMDICSMK---LQGINNVECLWLDKLQGIGDVLFNLD------TEGFSQ 589 (760)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~l~~l~---~~~l~~L~~L~l~~~~~~~~~~~~~~------~~~l~~ 589 (760)
++.... .....+++.|.++.+. +..+. ...+++|+.|.+.++.-. ..+.... ..++++
T Consensus 663 l~~~l~----------~~~~~~L~~L~Ls~N~--L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~ 729 (876)
T 4ecn_A 663 ISCSMD----------DYKGINASTVTLSYNE--IQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYL 729 (876)
T ss_dssp CSSCTT----------TCCCCCEEEEECCSSC--CCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGG
T ss_pred chhhhc----------cccCCCcCEEEccCCc--CCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCC
Confidence 221110 0133467788877665 33332 235678899988876432 2221111 123459
Q ss_pred CcEEeeccCCCceeeecCCCCcccccccccchhhhcccccccccccccccccccCCccEEEEecCC------CCCcccch
Q 048566 590 LKLLWVQNNPDIFCIVDSREMVACDAFPLLESLILHNLINMERVCIDRLKVESFNQLKNIEAYNCD------KLSNIFWL 663 (760)
Q Consensus 590 L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~------~L~~l~~~ 663 (760)
|+.|++++| .+..++... ....+++|+.|+++++ .+..++. ..+.+++|+.|++++++ -...+|.
T Consensus 730 L~~L~Ls~N-~L~~lp~~l---~~~~l~~L~~L~Ls~N-~L~~lp~---~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~- 800 (876)
T 4ecn_A 730 LTTIDLRFN-KLTSLSDDF---RATTLPYLSNMDVSYN-CFSSFPT---QPLNSSQLKAFGIRHQRDAEGNRILRQWPT- 800 (876)
T ss_dssp CCEEECCSS-CCCCCCGGG---STTTCTTCCEEECCSS-CCSSCCC---GGGGCTTCCEEECCCCBCTTCCBCCCCCCT-
T ss_pred ccEEECCCC-CCccchHHh---hhccCCCcCEEEeCCC-CCCccch---hhhcCCCCCEEECCCCCCcccccccccChH-
Confidence 999999987 555554211 1137899999999986 3444543 45679999999998733 2334443
Q ss_pred hhhhccCCCcEEEEecCCcchhhhccccccccccccccccccCeeecCCCccccccccCCCCCCCCCCCCC-Ccccceee
Q 048566 664 STTKCLPRLERIAVVNCSKMKEIFAIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCREVKTPSASPNRPV-SQEESTTM 742 (760)
Q Consensus 664 ~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~sL~~~~~~-~~~~~~~~ 742 (760)
.+..+++|++|++++|. +..+|. . .+++|+.|+|++|| +.++......+.+...... .-.....+
T Consensus 801 -~l~~L~~L~~L~Ls~N~-L~~Ip~---------~--l~~~L~~LdLs~N~-l~~i~~~~~~~~~~~~~~~L~~n~~~~I 866 (876)
T 4ecn_A 801 -GITTCPSLIQLQIGSND-IRKVDE---------K--LTPQLYILDIADNP-NISIDVTSVCPYIEAGMYVLLYDKTQDI 866 (876)
T ss_dssp -TGGGCSSCCEEECCSSC-CCBCCS---------C--CCSSSCEEECCSCT-TCEEECGGGHHHHHTTCCEEECCTTSEE
T ss_pred -HHhcCCCCCEEECCCCC-CCccCH---------h--hcCCCCEEECCCCC-CCccChHHccccccchheeecCCCcccc
Confidence 67889999999999994 577763 2 23789999999997 4444332222111000000 11123356
Q ss_pred cCCcccc
Q 048566 743 YGSSEIT 749 (760)
Q Consensus 743 ~~c~~l~ 749 (760)
.||+.+.
T Consensus 867 ~gC~~L~ 873 (876)
T 4ecn_A 867 RGCDALG 873 (876)
T ss_dssp ESCGGGC
T ss_pred CCCCCcc
Confidence 7888775
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=2.9e-23 Score=236.82 Aligned_cols=165 Identities=17% Similarity=0.158 Sum_probs=128.2
Q ss_pred CCccccccchhccccceEEEeecCCCCCCCC--CCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCC
Q 048566 289 NEDVWDWRNEDALRKCKAITLRYDSNRHFPE--GLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSF 366 (760)
Q Consensus 289 ~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l 366 (760)
+......| ...++.++.+.+.++....+++ ..++++|++|+++ ++.+. .++...|.++++|++|++++|.+..+
T Consensus 21 ~~~l~~iP-~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls--~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~ 96 (606)
T 3t6q_A 21 NLGLNEIP-GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLT--RCQIY-WIHEDTFQSQHRLDTLVLTANPLIFM 96 (606)
T ss_dssp TSCCSSCC-TTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECT--TCCCC-EECTTTTTTCTTCCEEECTTCCCSEE
T ss_pred CCCcccCc-CCCCCcCcEEEccCCccCcCChhHhccCccceEEECC--CCccc-eeChhhccCccccCeeeCCCCccccc
Confidence 33333444 2456788999998665566643 3489999999999 45555 35455678999999999999998865
Q ss_pred -hhhhhhhccCCeeEecCCCCCC--ccccccccccceeecccCcccccc-hhhhcCCCCCEEeccccccccccCcccccC
Q 048566 367 -PSSIDLLVNLHTLCLDQSALGD--IAIIGKLKNLEVLSFLMSDIMQLP-EELGQLNKLRLLDLTNCFHLKVIAPNLISS 442 (760)
Q Consensus 367 -p~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~ 442 (760)
|..++.+++|++|++++|.+.. +..++++++|++|++++|.+..++ ..+..+++|++|++++| .+..+++..++.
T Consensus 97 ~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~ 175 (606)
T 3t6q_A 97 AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSS 175 (606)
T ss_dssp CTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS-CCCEECHHHHHT
T ss_pred ChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccC-cccccChhhhhh
Confidence 7789999999999999999887 467889999999999999888763 34455899999999998 677777777888
Q ss_pred CCCCC--EEEccccccch
Q 048566 443 LTRLE--ELYMGNCFIEW 458 (760)
Q Consensus 443 l~~L~--~L~l~~~~~~~ 458 (760)
+++|+ +|++++|.+..
T Consensus 176 l~~L~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 176 LQQATNLSLNLNGNDIAG 193 (606)
T ss_dssp TTTCCSEEEECTTCCCCE
T ss_pred hcccceeEEecCCCccCc
Confidence 99888 88888886653
No 13
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=3.6e-23 Score=227.62 Aligned_cols=325 Identities=21% Similarity=0.281 Sum_probs=254.1
Q ss_pred CCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCCcccccccccccee
Q 048566 322 ECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGDIAIIGKLKNLEVL 401 (760)
Q Consensus 322 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L 401 (760)
++++++.|.+.+ +.+. .+|. +..+++|++|++++|.+..+|. ++++++|++|++++|.+...+.++++++|++|
T Consensus 44 ~l~~l~~L~l~~--~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADR--LGIK-SIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCS--SCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEE
T ss_pred HhccccEEecCC--CCCc-cCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEE
Confidence 467899999984 4444 3654 5789999999999999999987 99999999999999999885449999999999
Q ss_pred ecccCcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCC
Q 048566 402 SFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRL 481 (760)
Q Consensus 402 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 481 (760)
++++|.+..+|. +.++++|++|++++| .+..++. ++++++|++|+++++.. ....++++++|
T Consensus 118 ~L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~~~~--------------~~~~~~~l~~L 179 (466)
T 1o6v_A 118 TLFNNQITDIDP-LKNLTNLNRLELSSN-TISDISA--LSGLTSLQQLSFGNQVT--------------DLKPLANLTTL 179 (466)
T ss_dssp ECCSSCCCCCGG-GTTCTTCSEEEEEEE-EECCCGG--GTTCTTCSEEEEEESCC--------------CCGGGTTCTTC
T ss_pred ECCCCCCCCChH-HcCCCCCCEEECCCC-ccCCChh--hccCCcccEeecCCccc--------------CchhhccCCCC
Confidence 999999999886 899999999999998 6777664 89999999999964322 13348899999
Q ss_pred CEEEEEeccCCCCCcchhccccceeEEEecCCCCCCCccccccccCCCCcccccccccccceeeeccCccccccc-cccC
Q 048566 482 TTLEIDVKNDSILPEGFLARKLERFKISIGNESFMPPKCVRQDWFQSQPHFSINSDRKSLRALKLKLDFMDICSM-KLQG 560 (760)
Q Consensus 482 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~l~~l-~~~~ 560 (760)
+.|+++++....++....+++|+.|+++.|.....++ .....+++.|.+..+. +..+ .+..
T Consensus 180 ~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~----------------~~~l~~L~~L~l~~n~--l~~~~~l~~ 241 (466)
T 1o6v_A 180 ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP----------------LGILTNLDELSLNGNQ--LKDIGTLAS 241 (466)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG----------------GGGCTTCCEEECCSSC--CCCCGGGGG
T ss_pred CEEECcCCcCCCChhhccCCCCCEEEecCCccccccc----------------ccccCCCCEEECCCCC--cccchhhhc
Confidence 9999999998887776677999999999887655432 1345678888887665 2222 2556
Q ss_pred ccceeEEEeccccCccccccccCccccCCCcEEeeccCCCceeeecCCCCcccccccccchhhhcccccccccccccccc
Q 048566 561 INNVECLWLDKLQGIGDVLFNLDTEGFSQLKLLWVQNNPDIFCIVDSREMVACDAFPLLESLILHNLINMERVCIDRLKV 640 (760)
Q Consensus 561 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~ 640 (760)
+++|+.|.+.++.-... .+...+++|++|++++|. +..++ ....+++|+.|+++++. ++.+. +.
T Consensus 242 l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~l~~n~-l~~~~------~~~~l~~L~~L~L~~n~-l~~~~----~~ 305 (466)
T 1o6v_A 242 LTNLTDLDLANNQISNL----APLSGLTKLTELKLGANQ-ISNIS------PLAGLTALTNLELNENQ-LEDIS----PI 305 (466)
T ss_dssp CTTCSEEECCSSCCCCC----GGGTTCTTCSEEECCSSC-CCCCG------GGTTCTTCSEEECCSSC-CSCCG----GG
T ss_pred CCCCCEEECCCCccccc----hhhhcCCCCCEEECCCCc-cCccc------cccCCCccCeEEcCCCc-ccCch----hh
Confidence 68899999887643222 125679999999999874 44332 35678999999999864 44443 35
Q ss_pred cccCCccEEEEecCCCCCcccchhhhhccCCCcEEEEecCCcchhhhccccccccccccccccccCeeecCCCccccccc
Q 048566 641 ESFNQLKNIEAYNCDKLSNIFWLSTTKCLPRLERIAVVNCSKMKEIFAIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFC 720 (760)
Q Consensus 641 ~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~ 720 (760)
+.+++|+.|++.+| +++++++ +..+++|++|++++| .++.++ .+..+++|+.|++.+|+ +..+.
T Consensus 306 ~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~----------~l~~l~~L~~L~l~~n~-l~~~~ 369 (466)
T 1o6v_A 306 SNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNN-KVSDVS----------SLANLTNINWLSAGHNQ-ISDLT 369 (466)
T ss_dssp GGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSS-CCCCCG----------GGTTCTTCCEEECCSSC-CCBCG
T ss_pred cCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCC-ccCCch----------hhccCCCCCEEeCCCCc-cCccc
Confidence 67999999999998 5666654 678999999999999 566654 56789999999999985 44443
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=1.8e-23 Score=224.68 Aligned_cols=307 Identities=16% Similarity=0.190 Sum_probs=230.4
Q ss_pred CCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCCh-hhhhhhccCCeeEecCCCCCC-c-cccccc
Q 048566 319 EGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFP-SSIDLLVNLHTLCLDQSALGD-I-AIIGKL 395 (760)
Q Consensus 319 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~-~-~~~~~l 395 (760)
....+++++.|.+. .+.+. .+|..+|..+++|++|+++++.+..++ ..++.+++|++|++++|.+.. + ..++++
T Consensus 40 ~~~~l~~l~~l~l~--~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 116 (390)
T 3o6n_A 40 EDITLNNQKIVTFK--NSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116 (390)
T ss_dssp SSGGGCCCSEEEEE--SCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cccccCCceEEEec--CCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence 34567899999998 45554 588888899999999999999998775 488999999999999999877 3 558999
Q ss_pred cccceeecccCcccccchh-hhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhh
Q 048566 396 KNLEVLSFLMSDIMQLPEE-LGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDE 474 (760)
Q Consensus 396 ~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 474 (760)
++|++|++++|.+..+|.. ++++++|++|++++| .+..+++..++++++|++|++++|.+.. ..
T Consensus 117 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~~ 181 (390)
T 3o6n_A 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTH--------------VD 181 (390)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSB--------------CC
T ss_pred CCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCc--------------cc
Confidence 9999999999999999876 488999999999998 6788877778999999999999987751 13
Q ss_pred hcCCCCCCEEEEEeccCCCCCcchhccccceeEEEecCCCCCCCccccccccCCCCcccccccccccceeeeccCccccc
Q 048566 475 LMHLPRLTTLEIDVKNDSILPEGFLARKLERFKISIGNESFMPPKCVRQDWFQSQPHFSINSDRKSLRALKLKLDFMDIC 554 (760)
Q Consensus 475 l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~l~ 554 (760)
++.+++|+.|+++++....++ ...+|+.|+++.|.+..+|
T Consensus 182 ~~~l~~L~~L~l~~n~l~~~~---~~~~L~~L~l~~n~l~~~~------------------------------------- 221 (390)
T 3o6n_A 182 LSLIPSLFHANVSYNLLSTLA---IPIAVEELDASHNSINVVR------------------------------------- 221 (390)
T ss_dssp GGGCTTCSEEECCSSCCSEEE---CCSSCSEEECCSSCCCEEE-------------------------------------
T ss_pred cccccccceeecccccccccC---CCCcceEEECCCCeeeecc-------------------------------------
Confidence 567788999999877654322 2356777777766533221
Q ss_pred cccccCccceeEEEeccccCccccccccCccccCCCcEEeeccCCCceeeecCCCCcccccccccchhhhcccccccccc
Q 048566 555 SMKLQGINNVECLWLDKLQGIGDVLFNLDTEGFSQLKLLWVQNNPDIFCIVDSREMVACDAFPLLESLILHNLINMERVC 634 (760)
Q Consensus 555 ~l~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~ 634 (760)
....++|+.|.+.++.-.. . .....+++|++|+++++. +..++. .....+++|++|+++++ .++.++
T Consensus 222 ---~~~~~~L~~L~l~~n~l~~-~---~~l~~l~~L~~L~Ls~n~-l~~~~~----~~~~~l~~L~~L~L~~n-~l~~~~ 288 (390)
T 3o6n_A 222 ---GPVNVELTILKLQHNNLTD-T---AWLLNYPGLVEVDLSYNE-LEKIMY----HPFVKMQRLERLYISNN-RLVALN 288 (390)
T ss_dssp ---CCCCSSCCEEECCSSCCCC-C---GGGGGCTTCSEEECCSSC-CCEEES----GGGTTCSSCCEEECCSS-CCCEEE
T ss_pred ---ccccccccEEECCCCCCcc-c---HHHcCCCCccEEECCCCc-CCCcCh----hHccccccCCEEECCCC-cCcccC
Confidence 1122455555555543211 1 234568999999999874 444421 23456889999999875 455554
Q ss_pred cccccccccCCccEEEEecCCCCCcccchhhhhccCCCcEEEEecCCcchhhhccccccccccccccccccCeeecCCCc
Q 048566 635 IDRLKVESFNQLKNIEAYNCDKLSNIFWLSTTKCLPRLERIAVVNCSKMKEIFAIGEEVDNAIEKIEFAQLRSLSLGNLP 714 (760)
Q Consensus 635 ~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 714 (760)
. ....+++|+.|++++| +++.++. .+..+++|++|++++|+ ++.+ ....+++|+.|++.++|
T Consensus 289 ~---~~~~l~~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~N~-i~~~-----------~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 289 L---YGQPIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS-IVTL-----------KLSTHHTLKNLTLSHND 350 (390)
T ss_dssp C---SSSCCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC-CCCC-----------CCCTTCCCSEEECCSSC
T ss_pred c---ccCCCCCCCEEECCCC-cceecCc--cccccCcCCEEECCCCc-ccee-----------CchhhccCCEEEcCCCC
Confidence 3 3456899999999997 6777765 56789999999999984 5554 24568899999999986
No 15
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=1.1e-22 Score=214.99 Aligned_cols=304 Identities=19% Similarity=0.243 Sum_probs=235.0
Q ss_pred hccccceEEEeecCCCCCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCe
Q 048566 299 DALRKCKAITLRYDSNRHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHT 378 (760)
Q Consensus 299 ~~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~ 378 (760)
...++++++.+.+.....++....+++|++|++++ +.+. .++. |..+++|++|++++|.+..++ .+..+++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~--n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQGIEYLTNLEYLNLNG--NQIT-DISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE 114 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCS--SCCC-CCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred hhcccccEEEEeCCccccchhhhhcCCccEEEccC--Cccc-cchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence 34678899999866667788777899999999994 4554 3544 789999999999999999886 5899999999
Q ss_pred eEecCCCCCCccccccccccceeecccCcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccch
Q 048566 379 LCLDQSALGDIAIIGKLKNLEVLSFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEW 458 (760)
Q Consensus 379 L~l~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~ 458 (760)
|++++|.+...+.+..+++|++|++++|.....+..+..+++|++|++++| .+..++. ++.+++|++|++++|.+..
T Consensus 115 L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~~ 191 (347)
T 4fmz_A 115 LYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIED 191 (347)
T ss_dssp EECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCCC
T ss_pred EECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCcccc
Confidence 999999998866699999999999999955545556999999999999998 6777665 7899999999999997641
Q ss_pred hhhhccccccCCChhhhcCCCCCCEEEEEeccCCCCCcchhccccceeEEEecCCCCCCCccccccccCCCCcccccccc
Q 048566 459 EVERANSKRSNASLDELMHLPRLTTLEIDVKNDSILPEGFLARKLERFKISIGNESFMPPKCVRQDWFQSQPHFSINSDR 538 (760)
Q Consensus 459 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 538 (760)
+..+..+++|+.|+++++.....+....+++|+.|+++.|.+..++.
T Consensus 192 -------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-------------------- 238 (347)
T 4fmz_A 192 -------------ISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-------------------- 238 (347)
T ss_dssp -------------CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--------------------
T ss_pred -------------cccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--------------------
Confidence 23378899999999999988877776677999999998887544321
Q ss_pred cccceeeeccCccccccccccCccceeEEEeccccCccccccccCccccCCCcEEeeccCCCceeeecCCCCcccccccc
Q 048566 539 KSLRALKLKLDFMDICSMKLQGINNVECLWLDKLQGIGDVLFNLDTEGFSQLKLLWVQNNPDIFCIVDSREMVACDAFPL 618 (760)
Q Consensus 539 ~~l~~l~l~~~~~~l~~l~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~ 618 (760)
+..+++|+.|.+.++.- ... .....+++|++|++++| .+..+ .....+++
T Consensus 239 -------------------~~~l~~L~~L~l~~n~l-~~~---~~~~~l~~L~~L~l~~n-~l~~~------~~~~~l~~ 288 (347)
T 4fmz_A 239 -------------------LANLSQLTWLEIGTNQI-SDI---NAVKDLTKLKMLNVGSN-QISDI------SVLNNLSQ 288 (347)
T ss_dssp -------------------GTTCTTCCEEECCSSCC-CCC---GGGTTCTTCCEEECCSS-CCCCC------GGGGGCTT
T ss_pred -------------------hhcCCCCCEEECCCCcc-CCC---hhHhcCCCcCEEEccCC-ccCCC------hhhcCCCC
Confidence 22334555555555422 111 12456899999999987 44443 24567899
Q ss_pred cchhhhcccccccccccccccccccCCccEEEEecCCCCCcccchhhhhccCCCcEEEEecCC
Q 048566 619 LESLILHNLINMERVCIDRLKVESFNQLKNIEAYNCDKLSNIFWLSTTKCLPRLERIAVVNCS 681 (760)
Q Consensus 619 L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~ 681 (760)
|+.|+++++. +...... ..+.+++|+.|++++|+ ++.+++ +..+++|++|++++|+
T Consensus 289 L~~L~L~~n~-l~~~~~~--~l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 289 LNSLFLNNNQ-LGNEDME--VIGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp CSEEECCSSC-CCGGGHH--HHHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred CCEEECcCCc-CCCcChh--HhhccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence 9999999875 3333211 24568999999999986 666654 6889999999999984
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=7.5e-23 Score=238.92 Aligned_cols=388 Identities=17% Similarity=0.127 Sum_probs=206.8
Q ss_pred ccceEEEeecCCCCCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCC-CChhhhhhhccCCeeE
Q 048566 302 RKCKAITLRYDSNRHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFS-SFPSSIDLLVNLHTLC 380 (760)
Q Consensus 302 ~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~l~~L~~L~ 380 (760)
++++.+.+..+......+...+++|++|+++ .+.+.+.+|..++..+++|++|++++|.+. .+|..++++++|++|+
T Consensus 247 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~--~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 324 (768)
T 3rgz_A 247 TELKLLNISSNQFVGPIPPLPLKSLQYLSLA--ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324 (768)
T ss_dssp SSCCEEECCSSCCEESCCCCCCTTCCEEECC--SSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEE
T ss_pred CCCCEEECCCCcccCccCccccCCCCEEECc--CCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEE
Confidence 4455555553322222222256667777666 445555566666555577888888777776 5677777777888888
Q ss_pred ecCCCCC-C-ccc-cccccccceeecccCccc-ccchhhhcCC-CCCEEeccccccccccCcccccC--CCCCCEEEccc
Q 048566 381 LDQSALG-D-IAI-IGKLKNLEVLSFLMSDIM-QLPEELGQLN-KLRLLDLTNCFHLKVIAPNLISS--LTRLEELYMGN 453 (760)
Q Consensus 381 l~~~~l~-~-~~~-~~~l~~L~~L~l~~~~i~-~lp~~~~~l~-~L~~L~l~~~~~l~~~~~~~i~~--l~~L~~L~l~~ 453 (760)
+++|.+. . |.. ++++++|++|++++|.+. .+|..+.++. +|++|++++|......++. +.. +++|++|++++
T Consensus 325 L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~-~~~~~~~~L~~L~L~~ 403 (768)
T 3rgz_A 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN-LCQNPKNTLQELYLQN 403 (768)
T ss_dssp CCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTT-TTCSTTCCCCEEECCS
T ss_pred CCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChh-hhhcccCCccEEECCC
Confidence 8777765 3 333 777777777777777766 6676666665 6666666665322222222 333 44555555555
Q ss_pred cccchhhhhc-------------cccccCCChhhhcCCCCCCEEEEEeccCC-CCCcch-hccccceeEEEecCCCC-CC
Q 048566 454 CFIEWEVERA-------------NSKRSNASLDELMHLPRLTTLEIDVKNDS-ILPEGF-LARKLERFKISIGNESF-MP 517 (760)
Q Consensus 454 ~~~~~~~~~~-------------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~-l~ 517 (760)
|.+.+.++.. .....+..+..++.+++|+.|+++++... .+|... .+++|+.|+++.|.+.. +|
T Consensus 404 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 483 (768)
T 3rgz_A 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483 (768)
T ss_dssp SEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred CccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCC
Confidence 5443221100 00001122344455555555555554433 222222 23555555555554331 11
Q ss_pred CccccccccCCCCcccccccccccceeeeccCccc-cccccccCccceeEEEeccccCccccccccCccccCCCcEEeec
Q 048566 518 PKCVRQDWFQSQPHFSINSDRKSLRALKLKLDFMD-ICSMKLQGINNVECLWLDKLQGIGDVLFNLDTEGFSQLKLLWVQ 596 (760)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-l~~l~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~ 596 (760)
. ......+++.|++..+... .-.-.+..+++|+.|.+.++.-....+.. +..+++|+.|+++
T Consensus 484 ~---------------~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~--l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 484 S---------------GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE--LGDCRSLIWLDLN 546 (768)
T ss_dssp G---------------GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG--GGGCTTCCEEECC
T ss_pred H---------------HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH--HcCCCCCCEEECC
Confidence 1 0123445666666555421 10011334566666666665443332222 3457777777777
Q ss_pred cCCCceeeecCCCC-----------------------------------------------------------------c
Q 048566 597 NNPDIFCIVDSREM-----------------------------------------------------------------V 611 (760)
Q Consensus 597 ~~~~l~~i~~~~~~-----------------------------------------------------------------~ 611 (760)
+|.-...+|..... .
T Consensus 547 ~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~ 626 (768)
T 3rgz_A 547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626 (768)
T ss_dssp SSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC
T ss_pred CCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCch
Confidence 66432222211000 0
Q ss_pred ccccccccchhhhcccccccccccccccccccCCccEEEEecCCCCCcccchhhhhccCCCcEEEEecCCcchhhhcccc
Q 048566 612 ACDAFPLLESLILHNLINMERVCIDRLKVESFNQLKNIEAYNCDKLSNIFWLSTTKCLPRLERIAVVNCSKMKEIFAIGE 691 (760)
Q Consensus 612 ~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~ 691 (760)
....+++|+.|+++++.--..++. ..+.+++|+.|+++++.--..+|. .+..+++|++|++++|.--..+|
T Consensus 627 ~~~~l~~L~~LdLs~N~l~g~ip~---~l~~l~~L~~L~Ls~N~l~g~ip~--~l~~L~~L~~LdLs~N~l~g~ip---- 697 (768)
T 3rgz_A 627 TFDNNGSMMFLDMSYNMLSGYIPK---EIGSMPYLFILNLGHNDISGSIPD--EVGDLRGLNILDLSSNKLDGRIP---- 697 (768)
T ss_dssp SCSSSBCCCEEECCSSCCBSCCCG---GGGGCTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCEECCC----
T ss_pred hhhccccccEEECcCCcccccCCH---HHhccccCCEEeCcCCccCCCCCh--HHhCCCCCCEEECCCCcccCcCC----
Confidence 112245566666665432223333 455677777777777644445543 66777778888887774333443
Q ss_pred ccccccccccccccCeeecCCCccccccccCC
Q 048566 692 EVDNAIEKIEFAQLRSLSLGNLPEVTSFCREV 723 (760)
Q Consensus 692 ~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~ 723 (760)
..+..+++|++|++++++--..+|...
T Consensus 698 -----~~l~~l~~L~~L~ls~N~l~g~iP~~~ 724 (768)
T 3rgz_A 698 -----QAMSALTMLTEIDLSNNNLSGPIPEMG 724 (768)
T ss_dssp -----GGGGGCCCCSEEECCSSEEEEECCSSS
T ss_pred -----hHHhCCCCCCEEECcCCcccccCCCch
Confidence 366778888888888885444555443
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=1.6e-23 Score=236.02 Aligned_cols=180 Identities=19% Similarity=0.242 Sum_probs=131.0
Q ss_pred ccccceEEEeecCCCCCCCC--CCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhh-hhhhccC
Q 048566 300 ALRKCKAITLRYDSNRHFPE--GLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSS-IDLLVNL 376 (760)
Q Consensus 300 ~~~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~l~~L 376 (760)
..+.++.+.+.++....+++ ..++++|++|+++ ++.+. .++...|.++++|++|++++|.+..+|.. ++.+++|
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls--~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILK--SSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECT--TSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEECC--CCCcC-ccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence 34678888888554455532 3478888888888 45555 35555668888888888888888877554 8888888
Q ss_pred CeeEecCCCCCC---ccccccccccceeecccCc-ccccc-hhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEc
Q 048566 377 HTLCLDQSALGD---IAIIGKLKNLEVLSFLMSD-IMQLP-EELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYM 451 (760)
Q Consensus 377 ~~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~-i~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l 451 (760)
++|++++|.+.. ++.++++++|++|++++|. +..+| ..++++++|++|++++| .+....+..++++++|++|++
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l 179 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQSLKSIRDIHHLTL 179 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEE
T ss_pred cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC-cccccChhhhhccccCceEec
Confidence 888888888764 4668888888888888886 66676 46888888888888887 566655555888888888888
Q ss_pred cccccchhhhhccccccCCChhhhcCCCCCCEEEEEeccCCCC
Q 048566 452 GNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDSIL 494 (760)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 494 (760)
+.|.... ++ ...+..+++|+.|+++++.....
T Consensus 180 ~~n~~~~-~~----------~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 180 HLSESAF-LL----------EIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp ECSBSTT-HH----------HHHHHSTTTBSEEEEESCBCTTC
T ss_pred ccCcccc-cc----------hhhHhhcccccEEEccCCccccc
Confidence 8776531 10 11235688899999988776543
No 18
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=4.8e-23 Score=240.60 Aligned_cols=371 Identities=22% Similarity=0.170 Sum_probs=257.5
Q ss_pred cccceEEEeecCCCCCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCC-CChhhhhhhccCCee
Q 048566 301 LRKCKAITLRYDSNRHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFS-SFPSSIDLLVNLHTL 379 (760)
Q Consensus 301 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~l~~L~~L 379 (760)
.++++.+.+..+......+...+++|++|+++ .+.+.+.+|. +.++++|++|++++|.+. .+|..++.+++|++|
T Consensus 177 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls--~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 252 (768)
T 3rgz_A 177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVS--SNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252 (768)
T ss_dssp CTTCCEEECCSSEEESCCBCTTCTTCCEEECC--SSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEE
T ss_pred CCCCCEEECCCCcccccCCcccCCcCCEEECc--CCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEE
Confidence 45677777764433344444678888888888 4555544554 688888999999888887 557888888889999
Q ss_pred EecCCCCCC-ccccccccccceeecccCccc-ccchhhhcC-CCCCEEeccccccccccCcccccCCCCCCEEEcccccc
Q 048566 380 CLDQSALGD-IAIIGKLKNLEVLSFLMSDIM-QLPEELGQL-NKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFI 456 (760)
Q Consensus 380 ~l~~~~l~~-~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l-~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~ 456 (760)
++++|.+.. ++.. .+++|++|++++|.+. .+|..+..+ ++|++|++++| .+....+..++++++|++|++++|.+
T Consensus 253 ~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l 330 (768)
T 3rgz_A 253 NISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN-HFYGAVPPFFGSCSLLESLALSSNNF 330 (768)
T ss_dssp ECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS-EEEECCCGGGGGCTTCCEEECCSSEE
T ss_pred ECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCC-cCCCccchHHhcCCCccEEECCCCcc
Confidence 998888764 3333 7888999999988887 778777665 88999999988 55544455588899999999998877
Q ss_pred chhhhhccccccCCChhhhcCCCCCCEEEEEeccCC-CCCcch-hcc-ccceeEEEecCCCC-CCCccccccccCCCCcc
Q 048566 457 EWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDS-ILPEGF-LAR-KLERFKISIGNESF-MPPKCVRQDWFQSQPHF 532 (760)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~-~L~~L~l~~~~~~~-l~~~~~~~~~~~~~~~~ 532 (760)
.+.++ ...++.+++|+.|+++++... .+|... .+. +|+.|+++.|.+.. .|...
T Consensus 331 ~~~ip----------~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~------------ 388 (768)
T 3rgz_A 331 SGELP----------MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL------------ 388 (768)
T ss_dssp EEECC----------HHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTT------------
T ss_pred cCcCC----------HHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhh------------
Confidence 53332 234888899999999888754 455444 344 89999998776421 11000
Q ss_pred cccccccccceeeeccCccc-cccccccCccceeEEEeccccCccccccccCccccCCCcEEeeccCCCceeeecCCCCc
Q 048566 533 SINSDRKSLRALKLKLDFMD-ICSMKLQGINNVECLWLDKLQGIGDVLFNLDTEGFSQLKLLWVQNNPDIFCIVDSREMV 611 (760)
Q Consensus 533 ~~~~~~~~l~~l~l~~~~~~-l~~l~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~ 611 (760)
......+++.|.+..+... ...-.+..+++|+.|.+..+.-....+. .+..+++|+.|++++|.--..++ .
T Consensus 389 -~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p-----~ 460 (768)
T 3rgz_A 389 -CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS--SLGSLSKLRDLKLWLNMLEGEIP-----Q 460 (768)
T ss_dssp -TCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCG--GGGGCTTCCEEECCSSCCCSCCC-----G
T ss_pred -hhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccH--HHhcCCCCCEEECCCCcccCcCC-----H
Confidence 0012456777877766532 1111245567888888877643322222 24568999999999885322222 2
Q ss_pred ccccccccchhhhcccccccccccccccccccCCccEEEEecCCCCCcccchhhhhccCCCcEEEEecCCcchhhhcccc
Q 048566 612 ACDAFPLLESLILHNLINMERVCIDRLKVESFNQLKNIEAYNCDKLSNIFWLSTTKCLPRLERIAVVNCSKMKEIFAIGE 691 (760)
Q Consensus 612 ~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~ 691 (760)
....+++|++|+++++.-...++. ..+.+++|+.|++.+|.-...+|. .+..+++|++|++++|.-...+|
T Consensus 461 ~~~~l~~L~~L~L~~N~l~~~~p~---~l~~l~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p---- 531 (768)
T 3rgz_A 461 ELMYVKTLETLILDFNDLTGEIPS---GLSNCTNLNWISLSNNRLTGEIPK--WIGRLENLAILKLSNNSFSGNIP---- 531 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCG---GGGGCTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCEEECC----
T ss_pred HHcCCCCceEEEecCCcccCcCCH---HHhcCCCCCEEEccCCccCCcCCh--HHhcCCCCCEEECCCCcccCcCC----
Confidence 445789999999998754434433 456789999999999875555554 67889999999999995444554
Q ss_pred ccccccccccccccCeeecCCCcccccccc
Q 048566 692 EVDNAIEKIEFAQLRSLSLGNLPEVTSFCR 721 (760)
Q Consensus 692 ~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~ 721 (760)
..+..+++|+.|++++|+--..++.
T Consensus 532 -----~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 532 -----AELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp -----GGGGGCTTCCEEECCSSEEESBCCG
T ss_pred -----HHHcCCCCCCEEECCCCccCCcCCh
Confidence 3677899999999999964445543
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=3.9e-23 Score=235.70 Aligned_cols=379 Identities=12% Similarity=0.111 Sum_probs=223.0
Q ss_pred CCCCCCccEEEeeccCCccccc-----------------CCchhhc--CCCCceEEEecCCCCC-CChhhhhhhccCCee
Q 048566 320 GLECPNLEFLCISLKDSSLEIN-----------------IPGNFFI--GMKKLRVLDFTRMQFS-SFPSSIDLLVNLHTL 379 (760)
Q Consensus 320 ~~~~~~Lr~L~l~~~~~~~~~~-----------------~~~~~~~--~l~~Lr~L~l~~~~~~-~lp~~i~~l~~L~~L 379 (760)
..++++|++|+++ .+.+.+. +|..+ . ++++|++|++++|.+. .+|..++++++|++|
T Consensus 202 l~~l~~L~~L~Ls--~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 278 (636)
T 4eco_A 202 VMRLTKLRQFYMG--NSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278 (636)
T ss_dssp GGGCTTCCEEEEE--SCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEE
T ss_pred HhcccCCCEEECc--CCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEE
Confidence 3445666777766 3445432 55544 4 6777777777777654 566677777777777
Q ss_pred EecCCC-CCC---ccccccc------cccceeecccCcccccch--hhhcCCCCCEEecccccccc-ccCcccccCCCCC
Q 048566 380 CLDQSA-LGD---IAIIGKL------KNLEVLSFLMSDIMQLPE--ELGQLNKLRLLDLTNCFHLK-VIAPNLISSLTRL 446 (760)
Q Consensus 380 ~l~~~~-l~~---~~~~~~l------~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~-~~~~~~i~~l~~L 446 (760)
++++|. +.. |..++++ ++|++|++++|.+..+|. .++++++|++|++++| .+. .+| .++++++|
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N-~l~g~ip--~~~~l~~L 355 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKLP--AFGSEIKL 355 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSC-CCEEECC--CCEEEEEE
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCC-cCccchh--hhCCCCCC
Confidence 777776 542 4555555 677777777777777776 6777777777777776 444 555 36677777
Q ss_pred CEEEccccccchhhhhccccccCCChhhhcCCCC-CCEEEEEeccCCCCCcchhc---cccceeEEEecCCCCCCCcccc
Q 048566 447 EELYMGNCFIEWEVERANSKRSNASLDELMHLPR-LTTLEIDVKNDSILPEGFLA---RKLERFKISIGNESFMPPKCVR 522 (760)
Q Consensus 447 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~l~~~~~~ 522 (760)
++|++++|.+. ..+..+..+++ |+.|+++++....+|..... .+|+.|+++.|.+....+..
T Consensus 356 ~~L~L~~N~l~------------~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-- 421 (636)
T 4eco_A 356 ASLNLAYNQIT------------EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN-- 421 (636)
T ss_dssp SEEECCSSEEE------------ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCS--
T ss_pred CEEECCCCccc------------cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhh--
Confidence 77777776654 12345666666 77777777666666654322 35777777766643321100
Q ss_pred ccccCCCCcccccccccccceeeeccCcccccccc---ccCccceeEEEeccccCccccccccC------ccccCCCcEE
Q 048566 523 QDWFQSQPHFSINSDRKSLRALKLKLDFMDICSMK---LQGINNVECLWLDKLQGIGDVLFNLD------TEGFSQLKLL 593 (760)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~l~~l~---~~~l~~L~~L~l~~~~~~~~~~~~~~------~~~l~~L~~L 593 (760)
+.. .........+++.|.+..+. +..+. ...+++|+.|.+.++.-. ....... ..++++|+.|
T Consensus 422 l~~-----~~~~~~~~~~L~~L~Ls~N~--l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L 493 (636)
T 4eco_A 422 FDP-----LDPTPFKGINVSSINLSNNQ--ISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSI 493 (636)
T ss_dssp SCT-----TCSSCCCCCCEEEEECCSSC--CCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEE
T ss_pred hcc-----cccccccCCCCCEEECcCCc--cCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEE
Confidence 000 00000123356666665544 22221 223567777777765433 2211111 1123499999
Q ss_pred eeccCCCceeeecCCCCcccccccccchhhhcccccccccccccccccccCCccEEEEecCC------CCCcccchhhhh
Q 048566 594 WVQNNPDIFCIVDSREMVACDAFPLLESLILHNLINMERVCIDRLKVESFNQLKNIEAYNCD------KLSNIFWLSTTK 667 (760)
Q Consensus 594 ~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~------~L~~l~~~~~~~ 667 (760)
+++++ .++.++... ....+++|+.|+++++. ++.++. ....+++|+.|+++++. -...+|. .+.
T Consensus 494 ~Ls~N-~l~~lp~~~---~~~~l~~L~~L~Ls~N~-l~~ip~---~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~--~l~ 563 (636)
T 4eco_A 494 DLRFN-KLTKLSDDF---RATTLPYLVGIDLSYNS-FSKFPT---QPLNSSTLKGFGIRNQRDAQGNRTLREWPE--GIT 563 (636)
T ss_dssp ECCSS-CCCBCCGGG---STTTCTTCCEEECCSSC-CSSCCC---GGGGCSSCCEEECCSCBCTTCCBCCCCCCT--TGG
T ss_pred ECcCC-cCCccChhh---hhccCCCcCEEECCCCC-CCCcCh---hhhcCCCCCEEECCCCcccccCcccccChH--HHh
Confidence 99987 455554111 11378999999999864 444544 45679999999996533 3444443 678
Q ss_pred ccCCCcEEEEecCCcchhhhccccccccccccccccccCeeecCCCccccccccCCCCCCCCCCCCC-CcccceeecCCc
Q 048566 668 CLPRLERIAVVNCSKMKEIFAIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCREVKTPSASPNRPV-SQEESTTMYGSS 746 (760)
Q Consensus 668 ~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~sL~~~~~~-~~~~~~~~~~c~ 746 (760)
.+++|++|++++|. ++.+|. .+ +++|+.|+|+++| +.++......+.+...... .-.....+.||+
T Consensus 564 ~l~~L~~L~Ls~N~-l~~ip~---------~~--~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~ 630 (636)
T 4eco_A 564 LCPSLTQLQIGSND-IRKVNE---------KI--TPNISVLDIKDNP-NISIDLSYVCPYIEAGMYMLFYDKTQDIRGCD 630 (636)
T ss_dssp GCSSCCEEECCSSC-CCBCCS---------CC--CTTCCEEECCSCT-TCEEECTTTHHHHHTTCCEEECCTTSEEESCG
T ss_pred cCCCCCEEECCCCc-CCccCH---------hH--hCcCCEEECcCCC-CccccHHhcchhhhcccceeecCCccccCCCc
Confidence 89999999999994 577763 22 2899999999996 4444433332222111111 111234667888
Q ss_pred ccc
Q 048566 747 EIT 749 (760)
Q Consensus 747 ~l~ 749 (760)
.+.
T Consensus 631 ~L~ 633 (636)
T 4eco_A 631 ALD 633 (636)
T ss_dssp GGC
T ss_pred ccc
Confidence 775
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=2.3e-22 Score=229.46 Aligned_cols=193 Identities=17% Similarity=0.228 Sum_probs=145.7
Q ss_pred EEEeecCCCCCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCC-hhhhhhhccCCeeEecCC
Q 048566 306 AITLRYDSNRHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSF-PSSIDLLVNLHTLCLDQS 384 (760)
Q Consensus 306 ~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~ 384 (760)
.+.........+|.... +++++|+++ ++.+. .++...|.++++|++|++++|.+..+ |..++++++|++|++++|
T Consensus 15 ~~~c~~~~l~~ip~~~~-~~l~~L~Ls--~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 15 TYQCMDQKLSKVPDDIP-SSTKNIDLS--FNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp EEECTTSCCSSCCTTSC-TTCCEEECT--TSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ceEccCCCcccCCCCCC-CCcCEEECC--CCCcC-EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 34444445567776543 789999999 56665 46666789999999999999999977 678999999999999999
Q ss_pred CCCC--ccccccccccceeecccCcccccc-hhhhcCCCCCEEeccccccccc--cCcccccCCCCCCEEEccccccchh
Q 048566 385 ALGD--IAIIGKLKNLEVLSFLMSDIMQLP-EELGQLNKLRLLDLTNCFHLKV--IAPNLISSLTRLEELYMGNCFIEWE 459 (760)
Q Consensus 385 ~l~~--~~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~--~~~~~i~~l~~L~~L~l~~~~~~~~ 459 (760)
.+.. |..++++++|++|++++|.+..+| ..++++++|++|++++| .+.. +|. .++++++|++|++++|.+...
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~-~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPA-YFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCG-GGGTCTTCCEEECCSSCCCEE
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechH-hHhhcCCCCEEEccCCcceec
Confidence 9877 567999999999999999999887 67999999999999998 5654 444 599999999999999987532
Q ss_pred hhhccccccCCChhhhcCCCC-CCEEEEEeccCCCCCcchh-ccccceeEEEecC
Q 048566 460 VERANSKRSNASLDELMHLPR-LTTLEIDVKNDSILPEGFL-ARKLERFKISIGN 512 (760)
Q Consensus 460 ~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~ 512 (760)
. ...+..+.+++. ++.|+++.+....++...+ ..+|+.|+++.|.
T Consensus 169 ~--------~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~ 215 (606)
T 3vq2_A 169 T--------VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNF 215 (606)
T ss_dssp C--------TTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred C--------hhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCc
Confidence 1 112333444433 4467777766555554432 2467777776654
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=1.3e-22 Score=231.60 Aligned_cols=85 Identities=16% Similarity=0.133 Sum_probs=44.0
Q ss_pred cccceEEEeecCCCCCC--CCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCC-hhhhhhhccCC
Q 048566 301 LRKCKAITLRYDSNRHF--PEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSF-PSSIDLLVNLH 377 (760)
Q Consensus 301 ~~~~r~l~l~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~ 377 (760)
.+.++.+.+..+....+ ....++++|++|+++ ++.+.+ ++...+..+++|++|++++|.+..+ |..++.+.+|+
T Consensus 104 l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~--~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLG--SNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180 (606)
T ss_dssp CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECC--SSCCCC-CCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred cccccEeeccccCcccCCcchhccCCcccEEECC--CCcccc-cCcccccCCcccCEEEcccCcccccChhhhhhhcccc
Confidence 44566666664433443 123356666666666 333331 2111123466666666666666644 45566666666
Q ss_pred --eeEecCCCCCC
Q 048566 378 --TLCLDQSALGD 388 (760)
Q Consensus 378 --~L~l~~~~l~~ 388 (760)
.|++++|.+..
T Consensus 181 ~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 181 NLSLNLNGNDIAG 193 (606)
T ss_dssp SEEEECTTCCCCE
T ss_pred eeEEecCCCccCc
Confidence 55566655443
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.5e-22 Score=229.50 Aligned_cols=307 Identities=16% Similarity=0.190 Sum_probs=225.1
Q ss_pred CCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCCh-hhhhhhccCCeeEecCCCCCC-c-cccccc
Q 048566 319 EGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFP-SSIDLLVNLHTLCLDQSALGD-I-AIIGKL 395 (760)
Q Consensus 319 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~-~-~~~~~l 395 (760)
....+++++.+.+. .+.+. .+|..+|.++++|++|++++|.+..++ ..++.+++|++|++++|.+.. + ..++++
T Consensus 46 ~~l~l~~l~~l~l~--~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 122 (597)
T 3oja_B 46 EDITLNNQKIVTFK--NSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122 (597)
T ss_dssp SSGGGCCCSEEEES--SCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccccCCCceEEEee--CCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence 34567889999988 45554 588888999999999999999998775 589999999999999999887 3 457999
Q ss_pred cccceeecccCcccccchh-hhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhh
Q 048566 396 KNLEVLSFLMSDIMQLPEE-LGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDE 474 (760)
Q Consensus 396 ~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 474 (760)
++|++|++++|.+..+|.. ++++++|++|++++| .+..+++..++++++|++|++++|.+.. ..
T Consensus 123 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~--------------~~ 187 (597)
T 3oja_B 123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTH--------------VD 187 (597)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSB--------------CC
T ss_pred CCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCC--------------cC
Confidence 9999999999999999876 489999999999998 7888888778999999999999997751 13
Q ss_pred hcCCCCCCEEEEEeccCCCCCcchhccccceeEEEecCCCCCCCccccccccCCCCcccccccccccceeeeccCccccc
Q 048566 475 LMHLPRLTTLEIDVKNDSILPEGFLARKLERFKISIGNESFMPPKCVRQDWFQSQPHFSINSDRKSLRALKLKLDFMDIC 554 (760)
Q Consensus 475 l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~l~ 554 (760)
++.+++|+.|+++++....+ ....+|+.|+++.|.+..++
T Consensus 188 ~~~l~~L~~L~l~~n~l~~l---~~~~~L~~L~ls~n~l~~~~------------------------------------- 227 (597)
T 3oja_B 188 LSLIPSLFHANVSYNLLSTL---AIPIAVEELDASHNSINVVR------------------------------------- 227 (597)
T ss_dssp GGGCTTCSEEECCSSCCSEE---ECCTTCSEEECCSSCCCEEE-------------------------------------
T ss_pred hhhhhhhhhhhcccCccccc---cCCchhheeeccCCcccccc-------------------------------------
Confidence 56678899999987765432 23356788887776633221
Q ss_pred cccccCccceeEEEeccccCccccccccCccccCCCcEEeeccCCCceeeecCCCCcccccccccchhhhcccccccccc
Q 048566 555 SMKLQGINNVECLWLDKLQGIGDVLFNLDTEGFSQLKLLWVQNNPDIFCIVDSREMVACDAFPLLESLILHNLINMERVC 634 (760)
Q Consensus 555 ~l~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~ 634 (760)
....++|+.|.+.++.-.. . ..+..+++|+.|++++|. +..++ ......+++|+.|+++++ .+..++
T Consensus 228 ---~~~~~~L~~L~L~~n~l~~-~---~~l~~l~~L~~L~Ls~N~-l~~~~----~~~~~~l~~L~~L~Ls~N-~l~~l~ 294 (597)
T 3oja_B 228 ---GPVNVELTILKLQHNNLTD-T---AWLLNYPGLVEVDLSYNE-LEKIM----YHPFVKMQRLERLYISNN-RLVALN 294 (597)
T ss_dssp ---CSCCSCCCEEECCSSCCCC-C---GGGGGCTTCSEEECCSSC-CCEEE----SGGGTTCSSCCEEECTTS-CCCEEE
T ss_pred ---cccCCCCCEEECCCCCCCC-C---hhhccCCCCCEEECCCCc-cCCCC----HHHhcCccCCCEEECCCC-CCCCCC
Confidence 1111345555554442211 1 224568888888888764 44332 123456788888888875 455554
Q ss_pred cccccccccCCccEEEEecCCCCCcccchhhhhccCCCcEEEEecCCcchhhhccccccccccccccccccCeeecCCCc
Q 048566 635 IDRLKVESFNQLKNIEAYNCDKLSNIFWLSTTKCLPRLERIAVVNCSKMKEIFAIGEEVDNAIEKIEFAQLRSLSLGNLP 714 (760)
Q Consensus 635 ~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 714 (760)
. ..+.+|+|+.|++++| .++.+|. .+..+++|++|++++|. +..+ ....+++|+.|+++++|
T Consensus 295 ~---~~~~l~~L~~L~Ls~N-~l~~i~~--~~~~l~~L~~L~L~~N~-l~~~-----------~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 295 L---YGQPIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS-IVTL-----------KLSTHHTLKNLTLSHND 356 (597)
T ss_dssp C---SSSCCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC-CCCC-----------CCCTTCCCSEEECCSSC
T ss_pred c---ccccCCCCcEEECCCC-CCCccCc--ccccCCCCCEEECCCCC-CCCc-----------ChhhcCCCCEEEeeCCC
Confidence 3 3456889999999886 4556664 56788999999999884 4444 24567889999998876
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=6.4e-22 Score=221.25 Aligned_cols=142 Identities=19% Similarity=0.265 Sum_probs=86.6
Q ss_pred EEEeecCCCCCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCC-hhhhhhhccCCeeEecCC
Q 048566 306 AITLRYDSNRHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSF-PSSIDLLVNLHTLCLDQS 384 (760)
Q Consensus 306 ~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~ 384 (760)
.+.+.++....+|.... ++|+.|+++ ++.+. .++...|.++++|++|++++|.+..+ |..++++++|++|++++|
T Consensus 4 ~l~ls~n~l~~ip~~~~-~~L~~L~Ls--~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLS-QKTTILNIS--QNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp EEECTTSCCSSCCCSCC-TTCSEEECC--SSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred eEecCCCCccccccccc-ccccEEECC--CCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 34444344455555443 667777776 34444 34444556777777777777777655 556777777777777777
Q ss_pred CCCCccccccccccceeecccCcccc--cchhhhcCCCCCEEeccccccccccCcccccCCCCC--CEEEcccccc
Q 048566 385 ALGDIAIIGKLKNLEVLSFLMSDIMQ--LPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRL--EELYMGNCFI 456 (760)
Q Consensus 385 ~l~~~~~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L--~~L~l~~~~~ 456 (760)
.+..++.. .+.+|++|++++|.+.. +|..++++++|++|++++| .+.. ..++.+++| ++|++++|.+
T Consensus 80 ~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 80 KLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES-SCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred ceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCc-ccch---hhccccccceeeEEEeecccc
Confidence 76663333 66777777777776664 4566777777777777765 3433 224555566 6666666655
No 24
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=5.2e-22 Score=223.68 Aligned_cols=153 Identities=16% Similarity=0.207 Sum_probs=86.6
Q ss_pred cccceEEEeecCCCCCCCC--CCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCC--ChhhhhhhccC
Q 048566 301 LRKCKAITLRYDSNRHFPE--GLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSS--FPSSIDLLVNL 376 (760)
Q Consensus 301 ~~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~--lp~~i~~l~~L 376 (760)
.++++.+.+..+....+++ ..++++|++|+++ ++.+. .++...|.++++|++|++++|.+.. .|..++++++|
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls--~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 125 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS--DNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT--TSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECC--CCccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCc
Confidence 3456666666433344432 2356666666666 33443 3444445666666666666666653 34556666666
Q ss_pred CeeEecCCC-CCC-c-cccccccccceeecccCcccc-cchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEcc
Q 048566 377 HTLCLDQSA-LGD-I-AIIGKLKNLEVLSFLMSDIMQ-LPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMG 452 (760)
Q Consensus 377 ~~L~l~~~~-l~~-~-~~~~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~ 452 (760)
++|++++|. +.. + ..++++++|++|++++|.+.. .|..++.+++|++|++++| ....++...++.+++|++|+++
T Consensus 126 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~ 204 (549)
T 2z81_A 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS-ESAFLLEIFADILSSVRYLELR 204 (549)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS-BSTTHHHHHHHSTTTBSEEEEE
T ss_pred cEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC-cccccchhhHhhcccccEEEcc
Confidence 666666665 333 2 346666666666666666553 4555666666666666665 3444444434456666666666
Q ss_pred ccccc
Q 048566 453 NCFIE 457 (760)
Q Consensus 453 ~~~~~ 457 (760)
+|.+.
T Consensus 205 ~n~l~ 209 (549)
T 2z81_A 205 DTNLA 209 (549)
T ss_dssp SCBCT
T ss_pred CCccc
Confidence 66544
No 25
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=3.7e-22 Score=226.08 Aligned_cols=372 Identities=16% Similarity=0.150 Sum_probs=249.1
Q ss_pred cccceEEEeecCCCCCCCC--CCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChh-hhhhhccCC
Q 048566 301 LRKCKAITLRYDSNRHFPE--GLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPS-SIDLLVNLH 377 (760)
Q Consensus 301 ~~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~ 377 (760)
.++++.+.+.++....+++ ..++++|++|+++ ++.+. .++...|.++++|++|++++|.+..++. .++++++|+
T Consensus 51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~--~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 127 (570)
T 2z63_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT--GNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127 (570)
T ss_dssp CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECT--TCCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCC
T ss_pred CCCceEEECCCCcCCccCcccccCchhCCEEeCc--CCcCC-ccCHhhhcCccccccccccccccccCCCcccccccccc
Confidence 5678888888554455554 3478999999998 45454 3666667899999999999999888765 688999999
Q ss_pred eeEecCCCCCC---ccccccccccceeecccCcccccc-hhhhcCCCC----CEEeccccccccccCcc-----------
Q 048566 378 TLCLDQSALGD---IAIIGKLKNLEVLSFLMSDIMQLP-EELGQLNKL----RLLDLTNCFHLKVIAPN----------- 438 (760)
Q Consensus 378 ~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L----~~L~l~~~~~l~~~~~~----------- 438 (760)
+|++++|.+.. |..++++++|++|++++|.+..++ ..++.+++| +.|++++| .+..+++.
T Consensus 128 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n-~l~~~~~~~~~~~~L~~L~ 206 (570)
T 2z63_A 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLHKLT 206 (570)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC-CCCEECTTTTTTCEEEEEE
T ss_pred EEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC-CceecCHHHhccCcceeEe
Confidence 99999998764 677889999999999999888664 457777777 67777765 33333322
Q ss_pred ----------------------------------------------------------------------cccCCCCCCE
Q 048566 439 ----------------------------------------------------------------------LISSLTRLEE 448 (760)
Q Consensus 439 ----------------------------------------------------------------------~i~~l~~L~~ 448 (760)
.++.+++|++
T Consensus 207 l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~ 286 (570)
T 2z63_A 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286 (570)
T ss_dssp EESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSE
T ss_pred cccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccE
Confidence 2334566666
Q ss_pred EEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEeccCCCCCcchhccccceeEEEecCCCCCCCccccccccCC
Q 048566 449 LYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDSILPEGFLARKLERFKISIGNESFMPPKCVRQDWFQS 528 (760)
Q Consensus 449 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~ 528 (760)
|++++|.+. ..+..+..+ +|+.|+++++....+|. ..+++|+.|++..+........ .....
T Consensus 287 L~l~~~~l~------------~l~~~~~~~-~L~~L~l~~n~~~~l~~-~~l~~L~~L~l~~n~~~~~~~~----~~~~~ 348 (570)
T 2z63_A 287 FSLVSVTIE------------RVKDFSYNF-GWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGGNAFSE----VDLPS 348 (570)
T ss_dssp EEEESCEEC------------SCCBCCSCC-CCSEEEEESCBCSSCCB-CBCSSCCEEEEESCBSCCBCCC----CBCTT
T ss_pred EEecCccch------------hhhhhhccC-CccEEeeccCcccccCc-ccccccCEEeCcCCcccccccc----ccCCC
Confidence 666666543 223445566 78888888877776665 3456777777776653322110 00000
Q ss_pred CCcc--------------cccccccccceeeeccCccccccccccCccceeEEEeccccCccccccccCccccCCCcEEe
Q 048566 529 QPHF--------------SINSDRKSLRALKLKLDFMDICSMKLQGINNVECLWLDKLQGIGDVLFNLDTEGFSQLKLLW 594 (760)
Q Consensus 529 ~~~~--------------~~~~~~~~l~~l~l~~~~~~l~~l~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~ 594 (760)
...+ ......++++.+.+..+...-....+..+++|+.|.+.++.-... ........+++|++|+
T Consensus 349 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~ 427 (570)
T 2z63_A 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM-SEFSVFLSLRNLIYLD 427 (570)
T ss_dssp CCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESC-TTSCTTTTCTTCCEEE
T ss_pred CCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccc-cchhhhhcCCCCCEEe
Confidence 0000 011234577888877665211111155678899998887543221 1112346699999999
Q ss_pred eccCCCceeeecCCCCcccccccccchhhhcccccc-cccccccccccccCCccEEEEecCCCCCcccchhhhhccCCCc
Q 048566 595 VQNNPDIFCIVDSREMVACDAFPLLESLILHNLINM-ERVCIDRLKVESFNQLKNIEAYNCDKLSNIFWLSTTKCLPRLE 673 (760)
Q Consensus 595 l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l-~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~ 673 (760)
+++|. +..++ ......+++|++|+++++.-. ..++. ..+.+++|+.|++++| +++.+.+ ..+..+++|+
T Consensus 428 l~~n~-l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~p~---~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~ 497 (570)
T 2z63_A 428 ISHTH-TRVAF----NGIFNGLSSLEVLKMAGNSFQENFLPD---IFTELRNLTFLDLSQC-QLEQLSP-TAFNSLSSLQ 497 (570)
T ss_dssp CTTSC-CEECC----TTTTTTCTTCCEEECTTCEEGGGEECS---CCTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCC
T ss_pred CcCCc-ccccc----hhhhhcCCcCcEEECcCCcCccccchh---hhhcccCCCEEECCCC-ccccCCh-hhhhcccCCC
Confidence 99885 33321 123457899999999988633 12332 4567899999999998 4555532 3567899999
Q ss_pred EEEEecCCcchhhhccccccccccccccccccCeeecCCCc
Q 048566 674 RIAVVNCSKMKEIFAIGEEVDNAIEKIEFAQLRSLSLGNLP 714 (760)
Q Consensus 674 ~L~l~~c~~L~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 714 (760)
+|++++| .++.++.. .+..+++|+.|++.++|
T Consensus 498 ~L~l~~n-~l~~~~~~--------~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 498 VLNMASN-QLKSVPDG--------IFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp EEECCSS-CCSCCCTT--------TTTTCTTCCEEECCSSC
T ss_pred EEeCCCC-cCCCCCHH--------HhhcccCCcEEEecCCc
Confidence 9999999 67776542 56789999999999976
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=3e-22 Score=219.99 Aligned_cols=361 Identities=18% Similarity=0.167 Sum_probs=196.7
Q ss_pred ccccceEEEeecCCCCCC-CC-CCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCC-hhhhhhhccC
Q 048566 300 ALRKCKAITLRYDSNRHF-PE-GLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSF-PSSIDLLVNL 376 (760)
Q Consensus 300 ~~~~~r~l~l~~~~~~~~-~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L 376 (760)
.+++++++.+.++....+ +. ..++++|++|+++. +.+.+.++...|.++++|++|++++|.+..+ |..++++++|
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~--n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 105 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQ--QTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANL 105 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCC--CSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTC
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcC--CcccceECcccccccccCCEEeCCCCccCccChhhccCcccC
Confidence 345566666664333333 22 23566666666663 3332234455556666666666666666544 5556666666
Q ss_pred CeeEecCCCCCC--ccc--cccccccceeecccCccccc-chh-hhcCCCCCEEeccccccccccCcccccCC--CCCCE
Q 048566 377 HTLCLDQSALGD--IAI--IGKLKNLEVLSFLMSDIMQL-PEE-LGQLNKLRLLDLTNCFHLKVIAPNLISSL--TRLEE 448 (760)
Q Consensus 377 ~~L~l~~~~l~~--~~~--~~~l~~L~~L~l~~~~i~~l-p~~-~~~l~~L~~L~l~~~~~l~~~~~~~i~~l--~~L~~ 448 (760)
++|++++|.+.. +.. ++++++|++|++++|.+..+ |.. ++++++|++|++++| .+...++..+..+ .+|+.
T Consensus 106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~~~L~~ 184 (455)
T 3v47_A 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN-KVKSICEEDLLNFQGKHFTL 184 (455)
T ss_dssp CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC-CBSCCCTTTSGGGTTCEEEE
T ss_pred CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC-cccccChhhhhccccccccc
Confidence 666666666654 333 56666666666666666555 333 556666666666665 4444444434443 45666
Q ss_pred EEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEeccCCCCCcch-----hccccceeEEEecCCCCCCCccccc
Q 048566 449 LYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDSILPEGF-----LARKLERFKISIGNESFMPPKCVRQ 523 (760)
Q Consensus 449 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~l~~~~~~~ 523 (760)
|++++|.+....+. .........+..+++|+.|+++++......... ...+|+.|+++.+.......
T Consensus 185 L~l~~n~l~~~~~~---~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----- 256 (455)
T 3v47_A 185 LRLSSITLQDMNEY---WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF----- 256 (455)
T ss_dssp EECTTCBCTTCSTT---CTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT-----
T ss_pred cccccCcccccchh---hccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc-----
Confidence 66666554311100 000000111223455666666655432211111 11455555554443111000
Q ss_pred cccCCCCcccccccccccceeeeccCccccccccccC--ccceeEEEeccccCccccccccCccccCCCcEEeeccCCCc
Q 048566 524 DWFQSQPHFSINSDRKSLRALKLKLDFMDICSMKLQG--INNVECLWLDKLQGIGDVLFNLDTEGFSQLKLLWVQNNPDI 601 (760)
Q Consensus 524 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~l~~l~~~~--l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 601 (760)
....+. ......+.+ .++|+.|.+..+.-...... .+..+++|++|+++++. +
T Consensus 257 -------------~~~~~~---------~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~-l 311 (455)
T 3v47_A 257 -------------GHTNFK---------DPDNFTFKGLEASGVKTCDLSKSKIFALLKS--VFSHFTDLEQLTLAQNE-I 311 (455)
T ss_dssp -------------TCCSSC---------CCCTTTTGGGTTSCCCEEECCSSCCCEECTT--TTTTCTTCCEEECTTSC-C
T ss_pred -------------chhhhc---------cCcccccccccccCceEEEecCccccccchh--hcccCCCCCEEECCCCc-c
Confidence 000000 000000111 25677777776543322222 23568899999998874 4
Q ss_pred eeeecCCCCcccccccccchhhhcccccccccccccccccccCCccEEEEecCCCCCcccchhhhhccCCCcEEEEecCC
Q 048566 602 FCIVDSREMVACDAFPLLESLILHNLINMERVCIDRLKVESFNQLKNIEAYNCDKLSNIFWLSTTKCLPRLERIAVVNCS 681 (760)
Q Consensus 602 ~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~ 681 (760)
..++. .....+++|++|+++++. +..+... ..+.+++|+.|++++| +++.+++ ..+..+++|++|++++|
T Consensus 312 ~~~~~----~~~~~l~~L~~L~Ls~N~-l~~~~~~--~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N- 381 (455)
T 3v47_A 312 NKIDD----NAFWGLTHLLKLNLSQNF-LGSIDSR--MFENLDKLEVLDLSYN-HIRALGD-QSFLGLPNLKELALDTN- 381 (455)
T ss_dssp CEECT----TTTTTCTTCCEEECCSSC-CCEECGG--GGTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSS-
T ss_pred cccCh----hHhcCcccCCEEECCCCc-cCCcChh--HhcCcccCCEEECCCC-cccccCh-hhccccccccEEECCCC-
Confidence 44421 134567899999998863 4444221 3456899999999987 5565533 35678999999999997
Q ss_pred cchhhhccccccccccccccccccCeeecCCCc
Q 048566 682 KMKEIFAIGEEVDNAIEKIEFAQLRSLSLGNLP 714 (760)
Q Consensus 682 ~L~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 714 (760)
.++.++.. .+..+++|+.|+++++|
T Consensus 382 ~l~~~~~~--------~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 382 QLKSVPDG--------IFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CCSCCCTT--------TTTTCTTCCEEECCSSC
T ss_pred ccccCCHh--------HhccCCcccEEEccCCC
Confidence 67777642 45678999999998775
No 27
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=3.2e-21 Score=223.02 Aligned_cols=154 Identities=18% Similarity=0.219 Sum_probs=102.3
Q ss_pred ccccceEEEeecCCCCCCCC--CCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChh-hhhhhccC
Q 048566 300 ALRKCKAITLRYDSNRHFPE--GLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPS-SIDLLVNL 376 (760)
Q Consensus 300 ~~~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L 376 (760)
.+++++++.+.++....++. ..++++|++|+++ ++.+. .++...|.++++|++|++++|.+..+|. .++++++|
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls--~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 99 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG--FNTIS-KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 99 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECC--SSCCC-CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECC--CCccC-ccCHHHHhcccCcCEEECCCCccCccChhhhccCCCC
Confidence 45678888887555555654 3467888888887 34444 3444556777788888888877777765 47777788
Q ss_pred CeeEecCCCCCC-c-cccccccccceeecccCccccc-chhhhcCCCCCEEeccccccccccCccccc--CCCCCCEEEc
Q 048566 377 HTLCLDQSALGD-I-AIIGKLKNLEVLSFLMSDIMQL-PEELGQLNKLRLLDLTNCFHLKVIAPNLIS--SLTRLEELYM 451 (760)
Q Consensus 377 ~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~i~--~l~~L~~L~l 451 (760)
++|++++|.+.. + ..++++++|++|++++|.+... |..++++++|++|++++| .+..+++..++ .+++|++|++
T Consensus 100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L 178 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLEL 178 (680)
T ss_dssp SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEEC
T ss_pred CEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHhhccccccccEEEC
Confidence 888887777766 2 4577777777777777776654 345667777777777776 45555544332 3466666666
Q ss_pred cccccc
Q 048566 452 GNCFIE 457 (760)
Q Consensus 452 ~~~~~~ 457 (760)
++|.+.
T Consensus 179 ~~n~l~ 184 (680)
T 1ziw_A 179 SSNQIK 184 (680)
T ss_dssp TTCCCC
T ss_pred CCCccc
Confidence 666443
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=1.4e-21 Score=212.92 Aligned_cols=309 Identities=13% Similarity=0.132 Sum_probs=203.5
Q ss_pred cccceEEEeecCCCCCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeE
Q 048566 301 LRKCKAITLRYDSNRHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLC 380 (760)
Q Consensus 301 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~ 380 (760)
.+.++.+.+.++....+|....+++|++|+++ ++.+.+ +| +..+++|++|++++|.+..++ ++++++|++|+
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls--~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICT--SNNITT-LD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCSEEECC--SSCCSC-CC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCCcccChhhcccCCCCEEEcc--CCcCCe-Ec---cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 56778888875555666666678888888888 445552 43 578888888888888888775 77888888888
Q ss_pred ecCCCCCCccccccccccceeecccCcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhh
Q 048566 381 LDQSALGDIAIIGKLKNLEVLSFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEV 460 (760)
Q Consensus 381 l~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~ 460 (760)
+++|.+..++ ++++++|++|++++|.+..++ ++++++|++|++++|..+..++ ++.+++|++|++++|.+..
T Consensus 113 L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~-- 184 (457)
T 3bz5_A 113 CDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE-- 184 (457)
T ss_dssp CCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC--
T ss_pred CCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce--
Confidence 8888877754 788888888888888888775 7788888888888876666552 6778888888888887641
Q ss_pred hhccccccCCChhhhcCCCCCCEEEEEeccCCCCCcchhccccceeEEEecCCCCCCCccccccccCCCCcccccccccc
Q 048566 461 ERANSKRSNASLDELMHLPRLTTLEIDVKNDSILPEGFLARKLERFKISIGNESFMPPKCVRQDWFQSQPHFSINSDRKS 540 (760)
Q Consensus 461 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 540 (760)
+ .++.+++|+.|+++++....++ ...+++|+.|+++.|.+..+| + ...++
T Consensus 185 -----------l-~l~~l~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~l~~ip-~----------------~~l~~ 234 (457)
T 3bz5_A 185 -----------L-DVSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLTEID-V----------------TPLTQ 234 (457)
T ss_dssp -----------C-CCTTCTTCCEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC-C----------------TTCTT
T ss_pred -----------e-ccccCCCCCEEECcCCcCCeec-cccCCCCCEEECcCCcccccC-c----------------cccCC
Confidence 1 1667788888888887766653 345578888888877765543 1 23445
Q ss_pred cceeeeccCccccccccccCccceeEEEeccccCccccccccCccccCCCcEEeeccCCCceeeecCCCCcccccccccc
Q 048566 541 LRALKLKLDFMDICSMKLQGINNVECLWLDKLQGIGDVLFNLDTEGFSQLKLLWVQNNPDIFCIVDSREMVACDAFPLLE 620 (760)
Q Consensus 541 l~~l~l~~~~~~l~~l~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~ 620 (760)
++.+.+..+. +..+.+..+++|+.|.+.. .+|+.|++++|..+..++ .+.+++|+
T Consensus 235 L~~L~l~~N~--l~~~~~~~l~~L~~L~l~~----------------n~L~~L~l~~n~~~~~~~-------~~~l~~L~ 289 (457)
T 3bz5_A 235 LTYFDCSVNP--LTELDVSTLSKLTTLHCIQ----------------TDLLEIDLTHNTQLIYFQ-------AEGCRKIK 289 (457)
T ss_dssp CSEEECCSSC--CSCCCCTTCTTCCEEECTT----------------CCCSCCCCTTCTTCCEEE-------CTTCTTCC
T ss_pred CCEEEeeCCc--CCCcCHHHCCCCCEEeccC----------------CCCCEEECCCCccCCccc-------ccccccCC
Confidence 6666665544 3333344455555544321 244555555554444332 24456677
Q ss_pred hhhhccccccccccc-----ccccccccCCccEEEEecCCCCCcccchhhhhccCCCcEEEEecCCcchhh
Q 048566 621 SLILHNLINMERVCI-----DRLKVESFNQLKNIEAYNCDKLSNIFWLSTTKCLPRLERIAVVNCSKMKEI 686 (760)
Q Consensus 621 ~L~l~~~~~l~~~~~-----~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l 686 (760)
.|+++++..+..++. ..+....+++|+.|++.++ +++.++ +..+++|++|+++++ .++.+
T Consensus 290 ~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~----l~~l~~L~~L~l~~N-~l~~l 354 (457)
T 3bz5_A 290 ELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD----VSHNTKLKSLSCVNA-HIQDF 354 (457)
T ss_dssp CCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC----CTTCTTCSEEECCSS-CCCBC
T ss_pred EEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc----cccCCcCcEEECCCC-CCCCc
Confidence 777766655544432 0112234566777777664 455542 577888999988876 44443
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=8.4e-22 Score=232.50 Aligned_cols=165 Identities=19% Similarity=0.244 Sum_probs=123.7
Q ss_pred cCCccccccchhccccceEEEeecCCCCCCCC--CCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCC
Q 048566 288 GNEDVWDWRNEDALRKCKAITLRYDSNRHFPE--GLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSS 365 (760)
Q Consensus 288 ~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~ 365 (760)
....+..+|. .+++++.+.+.++....+.+ ..++++|++|+++++ ...+.++...|.++++|++|++++|.+..
T Consensus 12 s~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n--~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~ 87 (844)
T 3j0a_A 12 RFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQ--YTPLTIDKEAFRNLPNLRILDLGSSKIYF 87 (844)
T ss_dssp SCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTT--CCCCEECTTTTSSCTTCCEEECTTCCCCE
T ss_pred cCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCC--CCccccCHHHhcCCCCCCEEECCCCcCcc
Confidence 3444555565 67889999998655455532 348999999999954 23334766777999999999999999986
Q ss_pred C-hhhhhhhccCCeeEecCCCCCC--ccc--cccccccceeecccCcccccc--hhhhcCCCCCEEeccccccccccCcc
Q 048566 366 F-PSSIDLLVNLHTLCLDQSALGD--IAI--IGKLKNLEVLSFLMSDIMQLP--EELGQLNKLRLLDLTNCFHLKVIAPN 438 (760)
Q Consensus 366 l-p~~i~~l~~L~~L~l~~~~l~~--~~~--~~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~~l~~~~~~ 438 (760)
+ |..++++++|++|++++|.+.. |+. ++++++|++|++++|.+..++ ..++++++|++|++++| .+....+.
T Consensus 88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~~~~~ 166 (844)
T 3j0a_A 88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEH 166 (844)
T ss_dssp ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS-CCCCCCSG
T ss_pred cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC-cCCeeCHH
Confidence 6 8889999999999999999875 444 889999999999999888663 57899999999999987 55555444
Q ss_pred cccCC--CCCCEEEccccccc
Q 048566 439 LISSL--TRLEELYMGNCFIE 457 (760)
Q Consensus 439 ~i~~l--~~L~~L~l~~~~~~ 457 (760)
.++.+ ++|+.|++++|.+.
T Consensus 167 ~l~~l~~~~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 167 ELEPLQGKTLSFFSLAANSLY 187 (844)
T ss_dssp GGHHHHHCSSCCCEECCSBSC
T ss_pred HcccccCCccceEECCCCccc
Confidence 45554 56666666655543
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=5.2e-21 Score=221.30 Aligned_cols=168 Identities=22% Similarity=0.258 Sum_probs=134.4
Q ss_pred CCCCCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCC-hhhhhhhccCCeeEecCCCCCC-c
Q 048566 312 DSNRHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSF-PSSIDLLVNLHTLCLDQSALGD-I 389 (760)
Q Consensus 312 ~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~-~ 389 (760)
.....+|.... +++++|+++ ++.+. .++...|.++++|++|+++++.+..+ |..++++++|++|++++|.+.. +
T Consensus 14 ~~L~~ip~~~~-~~l~~L~Ls--~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 89 (680)
T 1ziw_A 14 LKLTQVPDDLP-TNITVLNLT--HNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 89 (680)
T ss_dssp SCCSSCCSCSC-TTCSEEECC--SSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCC
T ss_pred CCccccccccC-CCCcEEECC--CCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccC
Confidence 33456665443 789999999 55565 47777789999999999999999876 7789999999999999999988 4
Q ss_pred c-ccccccccceeecccCcccccc-hhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccc
Q 048566 390 A-IIGKLKNLEVLSFLMSDIMQLP-EELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKR 467 (760)
Q Consensus 390 ~-~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 467 (760)
+ .++++.+|++|++++|.+..+| ..++++++|++|++++| .+...++..++++++|++|++++|.+....
T Consensus 90 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~------- 161 (680)
T 1ziw_A 90 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQALK------- 161 (680)
T ss_dssp TTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCCCBC-------
T ss_pred hhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCcccccC-------
Confidence 3 5999999999999999999887 57899999999999998 677777777899999999999999765221
Q ss_pred cCCChhhhc--CCCCCCEEEEEeccCCCCC
Q 048566 468 SNASLDELM--HLPRLTTLEIDVKNDSILP 495 (760)
Q Consensus 468 ~~~~~~~l~--~l~~L~~L~l~~~~~~~~~ 495 (760)
...+. .+++|+.|+++++.....+
T Consensus 162 ----~~~~~~~~~~~L~~L~L~~n~l~~~~ 187 (680)
T 1ziw_A 162 ----SEELDIFANSSLKKLELSSNQIKEFS 187 (680)
T ss_dssp ----HHHHGGGTTCEESEEECTTCCCCCBC
T ss_pred ----HHHhhccccccccEEECCCCcccccC
Confidence 22222 4467777777766554433
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=3.9e-21 Score=216.75 Aligned_cols=143 Identities=20% Similarity=0.315 Sum_probs=97.5
Q ss_pred eEEEeecCCCCCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCC-hhhhhhhccCCeeEecC
Q 048566 305 KAITLRYDSNRHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSF-PSSIDLLVNLHTLCLDQ 383 (760)
Q Consensus 305 r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~ 383 (760)
+.+.+..+....+|.... ++++.|+++ ++.+. .++...|.++++|++|++++|.+..+ |..++.+++|++|++++
T Consensus 34 ~~l~ls~~~L~~ip~~~~-~~L~~L~Ls--~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP-PRTKALSLS--QNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CEEECTTSCCCSCCTTSC-TTCCEEECC--SSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEcCCCCCccCCCCCC-CCcCEEECC--CCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 556665444456665443 678888887 44454 35555667888888888888887765 56677788888888888
Q ss_pred CCCCCccccccccccceeecccCcccccc--hhhhcCCCCCEEeccccccccccCcccccCCCCC--CEEEcccccc
Q 048566 384 SALGDIAIIGKLKNLEVLSFLMSDIMQLP--EELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRL--EELYMGNCFI 456 (760)
Q Consensus 384 ~~l~~~~~~~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L--~~L~l~~~~~ 456 (760)
|.+..++.. .+.+|++|++++|.+..+| ..++++++|++|++++| .+.... +..+++| ++|++++|.+
T Consensus 110 N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 110 NRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp SCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred CcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC-ccccCc---hhhhhhceeeEEEeecccc
Confidence 887773333 7788888888888777654 67778888888888776 444422 3444444 7777777765
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=1.3e-21 Score=213.40 Aligned_cols=311 Identities=17% Similarity=0.150 Sum_probs=208.3
Q ss_pred CCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCCccccccccccce
Q 048566 321 LECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGDIAIIGKLKNLEV 400 (760)
Q Consensus 321 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~ 400 (760)
.++++|++|+++ ++.+. .+| .+..+++|++|++++|.+..+| ++.+++|++|++++|.+..++ ++++++|++
T Consensus 39 ~~l~~L~~L~Ls--~n~l~-~~~--~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~ 110 (457)
T 3bz5_A 39 EQLATLTSLDCH--NSSIT-DMT--GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTY 110 (457)
T ss_dssp HHHTTCCEEECC--SSCCC-CCT--TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCE
T ss_pred hHcCCCCEEEcc--CCCcc-cCh--hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCE
Confidence 367899999998 45555 355 3688999999999999999886 889999999999999988864 889999999
Q ss_pred eecccCcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCC
Q 048566 401 LSFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPR 480 (760)
Q Consensus 401 L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 480 (760)
|++++|.+..+| ++++++|++|++++| .+..++ ++++++|++|++++|...+.+ .++.+++
T Consensus 111 L~L~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~---l~~l~~L~~L~l~~n~~~~~~-------------~~~~l~~ 171 (457)
T 3bz5_A 111 LNCDTNKLTKLD--VSQNPLLTYLNCARN-TLTEID---VSHNTQLTELDCHLNKKITKL-------------DVTPQTQ 171 (457)
T ss_dssp EECCSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC---CTTCTTCCEEECTTCSCCCCC-------------CCTTCTT
T ss_pred EECCCCcCCeec--CCCCCcCCEEECCCC-ccceec---cccCCcCCEEECCCCCccccc-------------ccccCCc
Confidence 999999998886 889999999999998 677764 788999999999998654211 3677889
Q ss_pred CCEEEEEeccCCCCCcchhccccceeEEEecCCCCCCCccccccccCCCCcccccccccccceeeeccCccccccccccC
Q 048566 481 LTTLEIDVKNDSILPEGFLARKLERFKISIGNESFMPPKCVRQDWFQSQPHFSINSDRKSLRALKLKLDFMDICSMKLQG 560 (760)
Q Consensus 481 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~l~~l~~~~ 560 (760)
|+.|+++++....++ ...+++|+.|+++.|.+..++ ....++++.|+++.+. +..+++..
T Consensus 172 L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~~-----------------l~~l~~L~~L~Ls~N~--l~~ip~~~ 231 (457)
T 3bz5_A 172 LTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKLD-----------------LNQNIQLTFLDCSSNK--LTEIDVTP 231 (457)
T ss_dssp CCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSCCC-----------------CTTCTTCSEEECCSSC--CSCCCCTT
T ss_pred CCEEECCCCccceec-cccCCCCCEEECcCCcCCeec-----------------cccCCCCCEEECcCCc--ccccCccc
Confidence 999999998887776 445688888888877754431 0123344444444333 22222333
Q ss_pred ccceeEEEeccccCccccccccCccccCCCcEEeeccCCCceeeecCCCCcccccccccchhhhcccccccccccccccc
Q 048566 561 INNVECLWLDKLQGIGDVLFNLDTEGFSQLKLLWVQNNPDIFCIVDSREMVACDAFPLLESLILHNLINMERVCIDRLKV 640 (760)
Q Consensus 561 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~ 640 (760)
+++|+.|.+..+.-.. .+.+.+++|+.|++++ .+|+.|+++++..+..+ +.
T Consensus 232 l~~L~~L~l~~N~l~~-----~~~~~l~~L~~L~l~~-------------------n~L~~L~l~~n~~~~~~-----~~ 282 (457)
T 3bz5_A 232 LTQLTYFDCSVNPLTE-----LDVSTLSKLTTLHCIQ-------------------TDLLEIDLTHNTQLIYF-----QA 282 (457)
T ss_dssp CTTCSEEECCSSCCSC-----CCCTTCTTCCEEECTT-------------------CCCSCCCCTTCTTCCEE-----EC
T ss_pred cCCCCEEEeeCCcCCC-----cCHHHCCCCCEEeccC-------------------CCCCEEECCCCccCCcc-----cc
Confidence 3334443333321110 0112233333333321 24556666666655544 34
Q ss_pred cccCCccEEEEecCCCCCcccchhhhhccCCCcEEEEecCCcchhhhccccccccccccccccccCeeecCCC
Q 048566 641 ESFNQLKNIEAYNCDKLSNIFWLSTTKCLPRLERIAVVNCSKMKEIFAIGEEVDNAIEKIEFAQLRSLSLGNL 713 (760)
Q Consensus 641 ~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c 713 (760)
+.+++|+.|++++|+.+..++. ..++|+.|++++|++|+.+......... ..+..+++|+.|+++++
T Consensus 283 ~~l~~L~~L~Ls~n~~l~~l~~-----~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 283 EGCRKIKELDVTHNTQLYLLDC-----QAAGITELDLSQNPKLVYLYLNNTELTE-LDVSHNTKLKSLSCVNA 349 (457)
T ss_dssp TTCTTCCCCCCTTCTTCCEEEC-----TTCCCSCCCCTTCTTCCEEECTTCCCSC-CCCTTCTTCSEEECCSS
T ss_pred cccccCCEEECCCCcccceecc-----CCCcceEechhhcccCCEEECCCCcccc-cccccCCcCcEEECCCC
Confidence 5789999999999988877753 3345555555555555544322111111 13667888999988765
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=4.2e-21 Score=210.88 Aligned_cols=347 Identities=16% Similarity=0.189 Sum_probs=221.5
Q ss_pred CCCCCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCC-CC-hhhhhhhccCCeeEecCCCCCC-
Q 048566 312 DSNRHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFS-SF-PSSIDLLVNLHTLCLDQSALGD- 388 (760)
Q Consensus 312 ~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~l-p~~i~~l~~L~~L~l~~~~l~~- 388 (760)
.....+|. -.++|++|+++ ++.+. .++...|.++++|++|+++++.+. .+ +..+..+++|++|++++|.+..
T Consensus 20 ~~l~~lp~--l~~~l~~L~Ls--~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ 94 (455)
T 3v47_A 20 RGLHQVPE--LPAHVNYVDLS--LNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL 94 (455)
T ss_dssp SCCSSCCC--CCTTCCEEECC--SSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE
T ss_pred CCcccCCC--CCCccCEEEec--CCccC-cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc
Confidence 33456666 23678888888 45555 344455688888888888888875 44 5678888888888888888766
Q ss_pred -ccccccccccceeecccCcccc-cchh--hhcCCCCCEEeccccccccccCcc-cccCCCCCCEEEccccccchhhhhc
Q 048566 389 -IAIIGKLKNLEVLSFLMSDIMQ-LPEE--LGQLNKLRLLDLTNCFHLKVIAPN-LISSLTRLEELYMGNCFIEWEVERA 463 (760)
Q Consensus 389 -~~~~~~l~~L~~L~l~~~~i~~-lp~~--~~~l~~L~~L~l~~~~~l~~~~~~-~i~~l~~L~~L~l~~~~~~~~~~~~ 463 (760)
|..++++++|++|++++|.+.. .|.. ++++++|++|++++| .+..+++. .++++++|++|++++|.+...
T Consensus 95 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~---- 169 (455)
T 3v47_A 95 ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVKSI---- 169 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCBSCC----
T ss_pred ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCccccc----
Confidence 4678888888888888888874 3444 788888888888887 56666443 377888888888888876522
Q ss_pred cccccCCChhhhcCC--CCCCEEEEEeccCCCCCcch----------hccccceeEEEecCCCCCCCccccccccCCCCc
Q 048566 464 NSKRSNASLDELMHL--PRLTTLEIDVKNDSILPEGF----------LARKLERFKISIGNESFMPPKCVRQDWFQSQPH 531 (760)
Q Consensus 464 ~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~----------~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~~ 531 (760)
.+..+..+ .+|+.|+++.+....++... ..++|+.|+++.|.+.... + ..
T Consensus 170 -------~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~--~---------~~ 231 (455)
T 3v47_A 170 -------CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM--A---------KR 231 (455)
T ss_dssp -------CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHH--H---------HH
T ss_pred -------ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccc--h---------hh
Confidence 12333333 46677777766655444321 1245666666555421100 0 00
Q ss_pred ccccccccccceeeeccCccccccccccCccceeEEEeccccCccccc----------cccCccccCCCcEEeeccCCCc
Q 048566 532 FSINSDRKSLRALKLKLDFMDICSMKLQGINNVECLWLDKLQGIGDVL----------FNLDTEGFSQLKLLWVQNNPDI 601 (760)
Q Consensus 532 ~~~~~~~~~l~~l~l~~~~~~l~~l~~~~l~~L~~L~l~~~~~~~~~~----------~~~~~~~l~~L~~L~l~~~~~l 601 (760)
+. ..-...+++.|.+..+....... ..+..-..++|+.|+++++. +
T Consensus 232 ---------------------~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l 287 (455)
T 3v47_A 232 ---------------------FF--DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-I 287 (455)
T ss_dssp ---------------------HH--HHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-C
T ss_pred ---------------------hh--ccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc-c
Confidence 00 00011445555554432211100 00011124789999999875 4
Q ss_pred eeeecCCCCcccccccccchhhhcccccccccccccccccccCCccEEEEecCCCCCcccchhhhhccCCCcEEEEecCC
Q 048566 602 FCIVDSREMVACDAFPLLESLILHNLINMERVCIDRLKVESFNQLKNIEAYNCDKLSNIFWLSTTKCLPRLERIAVVNCS 681 (760)
Q Consensus 602 ~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~ 681 (760)
..++. .....+++|++|+++++. +..+... ....+++|+.|++++| .++.+++ ..+..+++|++|++++|
T Consensus 288 ~~~~~----~~~~~l~~L~~L~Ls~n~-l~~~~~~--~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N- 357 (455)
T 3v47_A 288 FALLK----SVFSHFTDLEQLTLAQNE-INKIDDN--AFWGLTHLLKLNLSQN-FLGSIDS-RMFENLDKLEVLDLSYN- 357 (455)
T ss_dssp CEECT----TTTTTCTTCCEEECTTSC-CCEECTT--TTTTCTTCCEEECCSS-CCCEECG-GGGTTCTTCCEEECCSS-
T ss_pred cccch----hhcccCCCCCEEECCCCc-ccccChh--HhcCcccCCEEECCCC-ccCCcCh-hHhcCcccCCEEECCCC-
Confidence 33321 134678999999999864 3333221 3456899999999997 5666643 36788999999999999
Q ss_pred cchhhhccccccccccccccccccCeeecCCCccccccccCCCC--CCCC
Q 048566 682 KMKEIFAIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCREVKT--PSAS 729 (760)
Q Consensus 682 ~L~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~--~sL~ 729 (760)
.++.++. ..+..+++|++|++.++ +++.++...+. ++|+
T Consensus 358 ~l~~~~~--------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 358 HIRALGD--------QSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQ 398 (455)
T ss_dssp CCCEECT--------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCC
T ss_pred cccccCh--------hhccccccccEEECCCC-ccccCCHhHhccCCccc
Confidence 5565543 26678999999999997 57777654433 5553
No 34
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=1e-20 Score=211.44 Aligned_cols=122 Identities=18% Similarity=0.252 Sum_probs=105.4
Q ss_pred cEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCCh-hhhhhhccCCeeEecCCCCCC--ccccccccccceeec
Q 048566 327 EFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFP-SSIDLLVNLHTLCLDQSALGD--IAIIGKLKNLEVLSF 403 (760)
Q Consensus 327 r~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l 403 (760)
++++++ ++.+. .+|..++ ++|++|++++|.+..++ ..+..+++|++|++++|.+.. |..++++++|++|++
T Consensus 3 ~~l~ls--~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 76 (520)
T 2z7x_B 3 FLVDRS--KNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76 (520)
T ss_dssp CEEECT--TSCCS-SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEEC
T ss_pred ceEecC--CCCcc-ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEec
Confidence 567777 55665 5887664 89999999999999775 689999999999999999987 468999999999999
Q ss_pred ccCcccccchhhhcCCCCCEEeccccccccccC-cccccCCCCCCEEEccccccc
Q 048566 404 LMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIA-PNLISSLTRLEELYMGNCFIE 457 (760)
Q Consensus 404 ~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~-~~~i~~l~~L~~L~l~~~~~~ 457 (760)
++|.+..+|.. .+++|++|++++| .+..++ +..++++++|++|++++|.+.
T Consensus 77 s~N~l~~lp~~--~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 77 SHNKLVKISCH--PTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp CSSCCCEEECC--CCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred CCCceeecCcc--ccCCccEEeccCC-ccccccchhhhccCCcceEEEecCcccc
Confidence 99999999977 8999999999998 566542 345999999999999999875
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=3.9e-21 Score=212.35 Aligned_cols=309 Identities=20% Similarity=0.206 Sum_probs=203.1
Q ss_pred EEeecCCCCCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCC-hhhhhhhccCCeeEecCCC
Q 048566 307 ITLRYDSNRHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSF-PSSIDLLVNLHTLCLDQSA 385 (760)
Q Consensus 307 l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~ 385 (760)
+.........+|... .+.++.|+++ .+.+. .++...|.++++|++|++++|.+..+ |..++++++|++|++++|.
T Consensus 16 v~c~~~~l~~ip~~~-~~~l~~L~L~--~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 16 VLCHRKRFVAVPEGI-PTETRLLDLG--KNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp EECCSCCCSSCCSCC-CTTCSEEECC--SSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEeCCCCcCcCCCCC-CCCCcEEECC--CCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 333334445566543 3578888888 45555 35555678888999999998888866 7788888899999998888
Q ss_pred CCC-c-cccccccccceeecccCccccc-chhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhh
Q 048566 386 LGD-I-AIIGKLKNLEVLSFLMSDIMQL-PEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVER 462 (760)
Q Consensus 386 l~~-~-~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~ 462 (760)
+.. + ..++++.+|++|++++|.+..+ |..+.++++|++|++++| .+..+++..++++++|++|++++|.+.
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~----- 165 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLT----- 165 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCS-----
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCcCc-----
Confidence 877 3 3478888899999988888766 456788888999998887 677777666888888999988888664
Q ss_pred ccccccCCChhhhcCCCCCCEEEEEeccCCCCCcch--hccccceeEEEecCCCC-CCCccccccccCCCCccccccccc
Q 048566 463 ANSKRSNASLDELMHLPRLTTLEIDVKNDSILPEGF--LARKLERFKISIGNESF-MPPKCVRQDWFQSQPHFSINSDRK 539 (760)
Q Consensus 463 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~ 539 (760)
......+..+++|+.|+++++....++... .+++|+.|+++.+.... ++.
T Consensus 166 ------~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--------------------- 218 (477)
T 2id5_A 166 ------SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP--------------------- 218 (477)
T ss_dssp ------SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT---------------------
T ss_pred ------ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc---------------------
Confidence 122456778888888888887765544432 34677777777654110 000
Q ss_pred ccceeeeccCccccccccccCccceeEEEeccccCccccccccCccccCCCcEEeeccCCCceeeecCCCCccccccccc
Q 048566 540 SLRALKLKLDFMDICSMKLQGINNVECLWLDKLQGIGDVLFNLDTEGFSQLKLLWVQNNPDIFCIVDSREMVACDAFPLL 619 (760)
Q Consensus 540 ~l~~l~l~~~~~~l~~l~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L 619 (760)
. .....+|+.|.+.++.-. ... ...+..+++|+.|+++++. +..++. .....+++|
T Consensus 219 ----------~-------~~~~~~L~~L~l~~n~l~-~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~----~~~~~l~~L 274 (477)
T 2id5_A 219 ----------N-------CLYGLNLTSLSITHCNLT-AVP-YLAVRHLVYLRFLNLSYNP-ISTIEG----SMLHELLRL 274 (477)
T ss_dssp ----------T-------TTTTCCCSEEEEESSCCC-SCC-HHHHTTCTTCCEEECCSSC-CCEECT----TSCTTCTTC
T ss_pred ----------c-------cccCccccEEECcCCccc-ccC-HHHhcCccccCeeECCCCc-CCccCh----hhccccccC
Confidence 0 011125666666554321 111 0113457888888888764 444421 123556778
Q ss_pred chhhhcccccccccccccccccccCCccEEEEecCCCCCcccchhhhhccCCCcEEEEecCC
Q 048566 620 ESLILHNLINMERVCIDRLKVESFNQLKNIEAYNCDKLSNIFWLSTTKCLPRLERIAVVNCS 681 (760)
Q Consensus 620 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~ 681 (760)
+.|+++++. +..+... ....+++|+.|+++++ +++.+++ ..+..+++|++|++++++
T Consensus 275 ~~L~L~~n~-l~~~~~~--~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 275 QEIQLVGGQ-LAVVEPY--AFRGLNYLRVLNVSGN-QLTTLEE-SVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CEEECCSSC-CSEECTT--TBTTCTTCCEEECCSS-CCSCCCG-GGBSCGGGCCEEECCSSC
T ss_pred CEEECCCCc-cceECHH--HhcCcccCCEEECCCC-cCceeCH-hHcCCCcccCEEEccCCC
Confidence 888887653 3333221 3445778888888775 5666543 345667788888887775
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=3.8e-21 Score=206.44 Aligned_cols=301 Identities=15% Similarity=0.161 Sum_probs=230.0
Q ss_pred cccceEEEeecCCCCCCCCC--CCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCCh-hhhhhhccCC
Q 048566 301 LRKCKAITLRYDSNRHFPEG--LECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFP-SSIDLLVNLH 377 (760)
Q Consensus 301 ~~~~r~l~l~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~ 377 (760)
..+++.+.+.++....+|.. .++++|++|+++ ++.+. .++...|..+++|++|++++|.+..+| ..++.+++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~--~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN--DLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECT--TSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECC--CCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 57889999986666778874 379999999999 45555 466667799999999999999999874 5689999999
Q ss_pred eeEecCCCCCC-ccc-cccccccceeecccCcccccch-hhhcCCCCCEEeccccccccccCcccccCCCCCCEEEcccc
Q 048566 378 TLCLDQSALGD-IAI-IGKLKNLEVLSFLMSDIMQLPE-ELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNC 454 (760)
Q Consensus 378 ~L~l~~~~l~~-~~~-~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~ 454 (760)
+|++++|.+.. |+. ++++++|++|++++|.+..++. .++++++|++|++++| .+..++ ++.+++|++|++++|
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSYN 196 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC---GGGCTTCSEEECCSS
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccc---cccccccceeecccc
Confidence 99999999988 444 6899999999999999998754 5899999999999998 676664 578999999999988
Q ss_pred ccchhhhhccccccCCChhhhcCCCCCCEEEEEeccCCCCCcchhccccceeEEEecCCCCCCCccccccccCCCCcccc
Q 048566 455 FIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDSILPEGFLARKLERFKISIGNESFMPPKCVRQDWFQSQPHFSI 534 (760)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 534 (760)
.+. .+...++|+.|+++++....++.. ...+|+.|+++.|.+...+.
T Consensus 197 ~l~----------------~~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~~---------------- 243 (390)
T 3o6n_A 197 LLS----------------TLAIPIAVEELDASHNSINVVRGP-VNVELTILKLQHNNLTDTAW---------------- 243 (390)
T ss_dssp CCS----------------EEECCSSCSEEECCSSCCCEEECC-CCSSCCEEECCSSCCCCCGG----------------
T ss_pred ccc----------------ccCCCCcceEEECCCCeeeecccc-ccccccEEECCCCCCcccHH----------------
Confidence 654 344556899999999887666543 34789999998877433210
Q ss_pred cccccccceeeeccCccccccccccCccceeEEEeccccCccccccccCccccCCCcEEeeccCCCceeeecCCCCcccc
Q 048566 535 NSDRKSLRALKLKLDFMDICSMKLQGINNVECLWLDKLQGIGDVLFNLDTEGFSQLKLLWVQNNPDIFCIVDSREMVACD 614 (760)
Q Consensus 535 ~~~~~~l~~l~l~~~~~~l~~l~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 614 (760)
+..+++|+.|.+.++.-..... ..+..+++|++|+++++ .++.++. ...
T Consensus 244 -----------------------l~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n-~l~~~~~-----~~~ 292 (390)
T 3o6n_A 244 -----------------------LLNYPGLVEVDLSYNELEKIMY--HPFVKMQRLERLYISNN-RLVALNL-----YGQ 292 (390)
T ss_dssp -----------------------GGGCTTCSEEECCSSCCCEEES--GGGTTCSSCCEEECCSS-CCCEEEC-----SSS
T ss_pred -----------------------HcCCCCccEEECCCCcCCCcCh--hHccccccCCEEECCCC-cCcccCc-----ccC
Confidence 3334556666665543222111 12355899999999986 4665542 235
Q ss_pred cccccchhhhcccccccccccccccccccCCccEEEEecCCCCCcccchhhhhccCCCcEEEEecCC
Q 048566 615 AFPLLESLILHNLINMERVCIDRLKVESFNQLKNIEAYNCDKLSNIFWLSTTKCLPRLERIAVVNCS 681 (760)
Q Consensus 615 ~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~ 681 (760)
.+|+|++|+++++ .++.++. ..+.+++|+.|++.+|+ ++.++ +..+++|++|++++++
T Consensus 293 ~l~~L~~L~L~~n-~l~~~~~---~~~~l~~L~~L~L~~N~-i~~~~----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 293 PIPTLKVLDLSHN-HLLHVER---NQPQFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCTTCCEEECCSS-CCCCCGG---GHHHHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCSSC
T ss_pred CCCCCCEEECCCC-cceecCc---cccccCcCCEEECCCCc-cceeC----chhhccCCEEEcCCCC
Confidence 6899999999987 4555544 35578999999999975 66664 4788999999999985
No 37
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=1.4e-20 Score=216.04 Aligned_cols=146 Identities=23% Similarity=0.313 Sum_probs=118.1
Q ss_pred ccccccchhccccceEEEeecCCCCCCCC--CCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChh
Q 048566 291 DVWDWRNEDALRKCKAITLRYDSNRHFPE--GLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPS 368 (760)
Q Consensus 291 ~~~~~~~~~~~~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~ 368 (760)
.+..+|. ..+..++++.+.++....+++ ..++++|++|+++ ++.+. .+++..|.++++|++|+|++|.++.+|.
T Consensus 42 ~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls--~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 42 NFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS--RCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp CCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT--TCCCC-EECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred CcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECC--CCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence 3444443 456789999999777678875 4489999999999 55665 5788888999999999999999998864
Q ss_pred -hhhhhccCCeeEecCCCCCC-c-cccccccccceeecccCcccc--cchhhhcCCCCCEEeccccccccccCccccc
Q 048566 369 -SIDLLVNLHTLCLDQSALGD-I-AIIGKLKNLEVLSFLMSDIMQ--LPEELGQLNKLRLLDLTNCFHLKVIAPNLIS 441 (760)
Q Consensus 369 -~i~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~ 441 (760)
.++++.+|++|++++|.+.. + ..++++++|++|++++|.+.. +|..++.+++|++|++++| .+..+++..+.
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~ 194 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLR 194 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGH
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc-ccccccccccc
Confidence 58999999999999999888 3 358999999999999998874 5788899999999999997 56665544343
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=3.1e-20 Score=209.39 Aligned_cols=149 Identities=19% Similarity=0.255 Sum_probs=118.1
Q ss_pred CCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCCh-hhhhhhccCCeeEecCCCCCC--cccccccccc
Q 048566 322 ECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFP-SSIDLLVNLHTLCLDQSALGD--IAIIGKLKNL 398 (760)
Q Consensus 322 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L 398 (760)
.|...++++++ ++.+. .+|..++ ++|++|++++|.+..++ ..++++++|++|++++|.+.. +..++++++|
T Consensus 29 ~~~~~~~l~ls--~~~L~-~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 102 (562)
T 3a79_B 29 SNELESMVDYS--NRNLT-HVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDL 102 (562)
T ss_dssp ----CCEEECT--TSCCC-SCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred ccCCCcEEEcC--CCCCc-cCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCC
Confidence 34455888888 55665 4887653 78999999999999886 689999999999999999987 4679999999
Q ss_pred ceeecccCcccccchhhhcCCCCCEEeccccccccccC-cccccCCCCCCEEEccccccchhhhhccccccCCChhhhcC
Q 048566 399 EVLSFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIA-PNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMH 477 (760)
Q Consensus 399 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~-~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 477 (760)
++|++++|.+..+|.. .+++|++|++++| .+..++ +..++++++|++|++++|.+.. ..+..+.+
T Consensus 103 ~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-----------~~~~~l~~ 168 (562)
T 3a79_B 103 EYLDVSHNRLQNISCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-----------LDLLPVAH 168 (562)
T ss_dssp CEEECTTSCCCEECSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCCT-----------TTTGGGTT
T ss_pred CEEECCCCcCCccCcc--ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCcccc-----------Cchhhhhh
Confidence 9999999999999977 8999999999998 677765 3569999999999999998752 11233333
Q ss_pred CCCCCEEEEEeccC
Q 048566 478 LPRLTTLEIDVKND 491 (760)
Q Consensus 478 l~~L~~L~l~~~~~ 491 (760)
+ +|+.|+++++..
T Consensus 169 L-~L~~L~L~~n~l 181 (562)
T 3a79_B 169 L-HLSCILLDLVSY 181 (562)
T ss_dssp S-CEEEEEEEESSC
T ss_pred c-eeeEEEeecccc
Confidence 3 347777777654
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=2.8e-20 Score=205.47 Aligned_cols=149 Identities=18% Similarity=0.270 Sum_probs=66.7
Q ss_pred CceEEEecCCCCCCC-hhhhhhhccCCeeEecCCCCCC--ccccccccccceeecccCcccccchh-hhcCCCCCEEecc
Q 048566 352 KLRVLDFTRMQFSSF-PSSIDLLVNLHTLCLDQSALGD--IAIIGKLKNLEVLSFLMSDIMQLPEE-LGQLNKLRLLDLT 427 (760)
Q Consensus 352 ~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~ 427 (760)
++++|+++++.+..+ |..+.++++|++|++++|.+.. +..++++++|++|++++|.+..+|.. +.++++|++|+++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 444555555544433 2344445555555555554443 23444455555555555544444432 3444555555555
Q ss_pred ccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEeccCCCCCcch--hccccce
Q 048566 428 NCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDSILPEGF--LARKLER 505 (760)
Q Consensus 428 ~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~ 505 (760)
+| .+..+++..+.++++|++|++++|.+.. ..+..+..+++|+.|+++++....++... .+++|+.
T Consensus 113 ~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 180 (477)
T 2id5_A 113 EN-KIVILLDYMFQDLYNLKSLEVGDNDLVY-----------ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180 (477)
T ss_dssp TS-CCCEECTTTTTTCTTCCEEEECCTTCCE-----------ECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCE
T ss_pred CC-ccccCChhHccccccCCEEECCCCccce-----------eChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcE
Confidence 44 3344433334445555555554443321 11223444445555555544444443321 2344444
Q ss_pred eEEEecC
Q 048566 506 FKISIGN 512 (760)
Q Consensus 506 L~l~~~~ 512 (760)
|+++.|.
T Consensus 181 L~l~~n~ 187 (477)
T 2id5_A 181 LRLRHLN 187 (477)
T ss_dssp EEEESCC
T ss_pred EeCCCCc
Confidence 4444443
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=1.8e-20 Score=212.51 Aligned_cols=301 Identities=15% Similarity=0.158 Sum_probs=227.0
Q ss_pred cccceEEEeecCCCCCCCCC--CCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChh-hhhhhccCC
Q 048566 301 LRKCKAITLRYDSNRHFPEG--LECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPS-SIDLLVNLH 377 (760)
Q Consensus 301 ~~~~r~l~l~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~ 377 (760)
..+++.+.+.++....+|.. .++++|++|+++ ++.+. .++...|..+++|++|++++|.+..+|. .++++++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~--~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN--DLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECT--TSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECC--CCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 46778888886655777774 379999999999 45565 4666667999999999999999998754 579999999
Q ss_pred eeEecCCCCCC-ccc-cccccccceeecccCcccccch-hhhcCCCCCEEeccccccccccCcccccCCCCCCEEEcccc
Q 048566 378 TLCLDQSALGD-IAI-IGKLKNLEVLSFLMSDIMQLPE-ELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNC 454 (760)
Q Consensus 378 ~L~l~~~~l~~-~~~-~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~ 454 (760)
+|++++|.+.. |+. ++++++|++|++++|.+..++. .++++++|++|++++| .+..++ ++.+++|+.|++++|
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~---~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSYN 202 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC---GGGCTTCSEEECCSS
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC---hhhhhhhhhhhcccC
Confidence 99999999988 544 6899999999999999997765 6899999999999998 677765 567899999999998
Q ss_pred ccchhhhhccccccCCChhhhcCCCCCCEEEEEeccCCCCCcchhccccceeEEEecCCCCCCCccccccccCCCCcccc
Q 048566 455 FIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDSILPEGFLARKLERFKISIGNESFMPPKCVRQDWFQSQPHFSI 534 (760)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 534 (760)
.+. .+...++|+.|+++++....++... ..+|+.|+++.|.+...+.
T Consensus 203 ~l~----------------~l~~~~~L~~L~ls~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~---------------- 249 (597)
T 3oja_B 203 LLS----------------TLAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHNNLTDTAW---------------- 249 (597)
T ss_dssp CCS----------------EEECCTTCSEEECCSSCCCEEECSC-CSCCCEEECCSSCCCCCGG----------------
T ss_pred ccc----------------cccCCchhheeeccCCccccccccc-CCCCCEEECCCCCCCCChh----------------
Confidence 654 3455678999999998876655433 3689999998877432110
Q ss_pred cccccccceeeeccCccccccccccCccceeEEEeccccCccccccccCccccCCCcEEeeccCCCceeeecCCCCcccc
Q 048566 535 NSDRKSLRALKLKLDFMDICSMKLQGINNVECLWLDKLQGIGDVLFNLDTEGFSQLKLLWVQNNPDIFCIVDSREMVACD 614 (760)
Q Consensus 535 ~~~~~~l~~l~l~~~~~~l~~l~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 614 (760)
+..+++|+.|.+.++.-....+. .+..+++|+.|++++| .+..++. ...
T Consensus 250 -----------------------l~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N-~l~~l~~-----~~~ 298 (597)
T 3oja_B 250 -----------------------LLNYPGLVEVDLSYNELEKIMYH--PFVKMQRLERLYISNN-RLVALNL-----YGQ 298 (597)
T ss_dssp -----------------------GGGCTTCSEEECCSSCCCEEESG--GGTTCSSCCEEECTTS-CCCEEEC-----SSS
T ss_pred -----------------------hccCCCCCEEECCCCccCCCCHH--HhcCccCCCEEECCCC-CCCCCCc-----ccc
Confidence 33345566666555432222111 2355889999999876 4555542 234
Q ss_pred cccccchhhhcccccccccccccccccccCCccEEEEecCCCCCcccchhhhhccCCCcEEEEecCC
Q 048566 615 AFPLLESLILHNLINMERVCIDRLKVESFNQLKNIEAYNCDKLSNIFWLSTTKCLPRLERIAVVNCS 681 (760)
Q Consensus 615 ~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~ 681 (760)
.+|+|+.|+++++. +..++. ..+.+++|+.|++.+|. +..++ +..+++|+.|++++|+
T Consensus 299 ~l~~L~~L~Ls~N~-l~~i~~---~~~~l~~L~~L~L~~N~-l~~~~----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 299 PIPTLKVLDLSHNH-LLHVER---NQPQFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCTTCCEEECCSSC-CCCCGG---GHHHHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCSSC
T ss_pred cCCCCcEEECCCCC-CCccCc---ccccCCCCCEEECCCCC-CCCcC----hhhcCCCCEEEeeCCC
Confidence 68899999999864 445543 34678999999999875 55554 4778999999999986
No 41
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=1.1e-19 Score=214.37 Aligned_cols=186 Identities=17% Similarity=0.134 Sum_probs=142.1
Q ss_pred cCCCCCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCC-CCC-hhhhhhhccCCeeEecCCCCCC
Q 048566 311 YDSNRHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQF-SSF-PSSIDLLVNLHTLCLDQSALGD 388 (760)
Q Consensus 311 ~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~-~~l-p~~i~~l~~L~~L~l~~~~l~~ 388 (760)
......+|. -.++++.|+++ .+.+. .++...|.++++|++|++++|.. ..+ |..++++++|++|++++|.+..
T Consensus 13 ~~~L~~vP~--lp~~l~~LdLs--~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~ 87 (844)
T 3j0a_A 13 FCNLTQVPQ--VLNTTERLLLS--FNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF 87 (844)
T ss_dssp CCCSSCCCS--SCTTCCEEEEE--SCCCC-EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE
T ss_pred CCCCCCCCC--CCCCcCEEECC--CCcCC-ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc
Confidence 344567777 56899999999 55565 35555679999999999999954 455 7889999999999999999876
Q ss_pred --ccccccccccceeecccCcccc-cchh--hhcCCCCCEEeccccccccccC-cccccCCCCCCEEEccccccchhhhh
Q 048566 389 --IAIIGKLKNLEVLSFLMSDIMQ-LPEE--LGQLNKLRLLDLTNCFHLKVIA-PNLISSLTRLEELYMGNCFIEWEVER 462 (760)
Q Consensus 389 --~~~~~~l~~L~~L~l~~~~i~~-lp~~--~~~l~~L~~L~l~~~~~l~~~~-~~~i~~l~~L~~L~l~~~~~~~~~~~ 462 (760)
|..++++.+|++|++++|.+.. +|.. ++++++|++|++++| .+..++ +..++++++|++|++++|.+..
T Consensus 88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~---- 162 (844)
T 3j0a_A 88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFL---- 162 (844)
T ss_dssp ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCCC----
T ss_pred cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCCe----
Confidence 5789999999999999999885 5555 899999999999998 565554 3568999999999999998752
Q ss_pred ccccccCCChhhhcCC--CCCCEEEEEeccCCCCCcc--hhc------cccceeEEEecCC
Q 048566 463 ANSKRSNASLDELMHL--PRLTTLEIDVKNDSILPEG--FLA------RKLERFKISIGNE 513 (760)
Q Consensus 463 ~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~--~~~------~~L~~L~l~~~~~ 513 (760)
..+..+..+ ++|+.|+++.+........ ..+ .+|+.|+++.|.+
T Consensus 163 -------~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 216 (844)
T 3j0a_A 163 -------VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216 (844)
T ss_dssp -------CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCS
T ss_pred -------eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcC
Confidence 223445544 7888888887764332111 111 2488888887753
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=4.2e-20 Score=192.55 Aligned_cols=90 Identities=21% Similarity=0.375 Sum_probs=79.2
Q ss_pred CCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCC-ccccccccccceeecccCcccccchhhhcCCCCCEEecc
Q 048566 349 GMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGD-IAIIGKLKNLEVLSFLMSDIMQLPEELGQLNKLRLLDLT 427 (760)
Q Consensus 349 ~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~ 427 (760)
...++++|+++++.+..+|..++++++|++|++++|.+.. |..++++.+|++|++++|.+..+|..++++++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 4577899999999999999999999999999999999887 677899999999999999999999999999999999999
Q ss_pred ccccccccCcc
Q 048566 428 NCFHLKVIAPN 438 (760)
Q Consensus 428 ~~~~l~~~~~~ 438 (760)
+|..+..+|..
T Consensus 159 ~n~~~~~~p~~ 169 (328)
T 4fcg_A 159 ACPELTELPEP 169 (328)
T ss_dssp EETTCCCCCSC
T ss_pred CCCCccccChh
Confidence 98777777654
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=1.4e-19 Score=207.77 Aligned_cols=140 Identities=23% Similarity=0.364 Sum_probs=118.3
Q ss_pred CCCCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCCh-hhhhhhccCCeeEecCCCCCC-c-
Q 048566 313 SNRHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFP-SSIDLLVNLHTLCLDQSALGD-I- 389 (760)
Q Consensus 313 ~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~-~- 389 (760)
....+|...- +.++.|+|+ ++.++ .+|...|.++++|++|+|++|.+..+| ..|.++++|++|+|++|.++. +
T Consensus 42 ~l~~vP~~lp-~~~~~LdLs--~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 42 NFYKIPDNLP-FSTKNLDLS--FNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp CCSSCCSSSC-TTCCEEECT--TSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred CcCccCCCCC-cCCCEEEee--CCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence 3456665432 479999999 66676 588888899999999999999999885 468999999999999999988 4
Q ss_pred cccccccccceeecccCcccccch-hhhcCCCCCEEeccccccccccC-cccccCCCCCCEEEccccccc
Q 048566 390 AIIGKLKNLEVLSFLMSDIMQLPE-ELGQLNKLRLLDLTNCFHLKVIA-PNLISSLTRLEELYMGNCFIE 457 (760)
Q Consensus 390 ~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~~-~~~i~~l~~L~~L~l~~~~~~ 457 (760)
..|+++.+|++|++++|++..+|. .++++++|++|++++| .+..++ +..++++++|++|++++|.+.
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCcccc
Confidence 458999999999999999999986 4899999999999998 565543 455889999999999998765
No 44
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=6.5e-19 Score=191.80 Aligned_cols=308 Identities=18% Similarity=0.149 Sum_probs=140.2
Q ss_pred CCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCCccccccccccceeec
Q 048566 324 PNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGDIAIIGKLKNLEVLSF 403 (760)
Q Consensus 324 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l 403 (760)
++|+.|+++ ++.+.+ +|. .+.+|++|++++|.+..+|.. .++|++|++++|.+..++.++++.+|++|++
T Consensus 91 ~~L~~L~l~--~n~l~~-lp~----~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l 160 (454)
T 1jl5_A 91 PHLESLVAS--CNSLTE-LPE----LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLPELQNSSFLKIIDV 160 (454)
T ss_dssp TTCSEEECC--SSCCSS-CCC----CCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEEC
T ss_pred CCCCEEEcc--CCcCCc-ccc----ccCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCcccCCCCCCCEEEC
Confidence 455555555 333331 332 124555555555555544421 1355555555555554334555555555555
Q ss_pred ccCcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCE
Q 048566 404 LMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTT 483 (760)
Q Consensus 404 ~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 483 (760)
++|.+..+|..+ .+|++|++++| .+..+|. ++++++|++|++++|.+.+ + +. ..++|+.
T Consensus 161 ~~N~l~~lp~~~---~~L~~L~L~~n-~l~~l~~--~~~l~~L~~L~l~~N~l~~-l-----------~~---~~~~L~~ 219 (454)
T 1jl5_A 161 DNNSLKKLPDLP---PSLEFIAAGNN-QLEELPE--LQNLPFLTAIYADNNSLKK-L-----------PD---LPLSLES 219 (454)
T ss_dssp CSSCCSCCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSS-C-----------CC---CCTTCCE
T ss_pred CCCcCcccCCCc---ccccEEECcCC-cCCcCcc--ccCCCCCCEEECCCCcCCc-C-----------CC---CcCcccE
Confidence 555555554322 35555555555 4444442 5555555555555554431 0 00 0124555
Q ss_pred EEEEeccCCCCCcchhccccceeEEEecCCCCCCCccccccccCCCCcccccccccccceeeeccCccccccccccCccc
Q 048566 484 LEIDVKNDSILPEGFLARKLERFKISIGNESFMPPKCVRQDWFQSQPHFSINSDRKSLRALKLKLDFMDICSMKLQGINN 563 (760)
Q Consensus 484 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~l~~l~~~~l~~ 563 (760)
|+++++....+|....+++|+.|+++.|.+..+|.. ..+++.|.+..+. +..+ ...+++
T Consensus 220 L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~~------------------~~~L~~L~l~~N~--l~~l-~~~~~~ 278 (454)
T 1jl5_A 220 IVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDL------------------PPSLEALNVRDNY--LTDL-PELPQS 278 (454)
T ss_dssp EECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSC------------------CTTCCEEECCSSC--CSCC-CCCCTT
T ss_pred EECcCCcCCcccccCCCCCCCEEECCCCcCCccccc------------------ccccCEEECCCCc--cccc-CcccCc
Confidence 555555544444433445555555555544333211 1234444443332 2221 122355
Q ss_pred eeEEEeccccCccccccccCccccCCCcEEeeccCCCceeeecCCCCcccccccccchhhhccccccccccccccccccc
Q 048566 564 VECLWLDKLQGIGDVLFNLDTEGFSQLKLLWVQNNPDIFCIVDSREMVACDAFPLLESLILHNLINMERVCIDRLKVESF 643 (760)
Q Consensus 564 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~ 643 (760)
|+.|.+.++.-. .... ..++|+.|+++++ .+..++ ...++|++|+++++ .++.++. .+
T Consensus 279 L~~L~ls~N~l~-~l~~-----~~~~L~~L~l~~N-~l~~i~--------~~~~~L~~L~Ls~N-~l~~lp~------~~ 336 (454)
T 1jl5_A 279 LTFLDVSENIFS-GLSE-----LPPNLYYLNASSN-EIRSLC--------DLPPSLEELNVSNN-KLIELPA------LP 336 (454)
T ss_dssp CCEEECCSSCCS-EESC-----CCTTCCEEECCSS-CCSEEC--------CCCTTCCEEECCSS-CCSCCCC------CC
T ss_pred CCEEECcCCccC-cccC-----cCCcCCEEECcCC-cCCccc--------CCcCcCCEEECCCC-ccccccc------cC
Confidence 666666554211 1100 1257777777765 333331 11247777777764 3443321 25
Q ss_pred CCccEEEEecCCCCCcccchhhhhccCCCcEEEEecCCcchhhhcccccccccccccc-------------ccccCeeec
Q 048566 644 NQLKNIEAYNCDKLSNIFWLSTTKCLPRLERIAVVNCSKMKEIFAIGEEVDNAIEKIE-------------FAQLRSLSL 710 (760)
Q Consensus 644 ~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~-------------l~~L~~L~l 710 (760)
++|+.|++++| +++.++. .+++|++|++++| .++.++..+ ..+.. +++|+.|++
T Consensus 337 ~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N-~l~~l~~ip------~~l~~L~~n~~~~~i~~~~~~L~~L~l 403 (454)
T 1jl5_A 337 PRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYN-PLREFPDIP------ESVEDLRMNSHLAEVPELPQNLKQLHV 403 (454)
T ss_dssp TTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSSCCCCC------TTCCEEECCC-----------------
T ss_pred CcCCEEECCCC-ccccccc-----hhhhccEEECCCC-CCCcCCCCh------HHHHhhhhcccccccccccCcCCEEEC
Confidence 77888888776 5666653 4678888888877 344422110 11222 277888888
Q ss_pred CCCcccccc
Q 048566 711 GNLPEVTSF 719 (760)
Q Consensus 711 ~~c~~L~~~ 719 (760)
++++ ++.+
T Consensus 404 s~N~-l~~~ 411 (454)
T 1jl5_A 404 ETNP-LREF 411 (454)
T ss_dssp ---------
T ss_pred CCCc-CCcc
Confidence 8874 5443
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=1.2e-19 Score=189.96 Aligned_cols=169 Identities=18% Similarity=0.278 Sum_probs=128.1
Q ss_pred CccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCC-hhhhhhhccCCeeEecCCCCCC--cccccccccccee
Q 048566 325 NLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSF-PSSIDLLVNLHTLCLDQSALGD--IAIIGKLKNLEVL 401 (760)
Q Consensus 325 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L 401 (760)
+++.++++ .+.+. .+|..+ .++|++|+++++.+..+ |..++++++|++|++++|.+.. +..++++++|++|
T Consensus 34 ~l~~l~~~--~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 34 HLRVVQCS--DLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp ETTEEECC--SSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred cCCEEECC--CCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence 67888877 34444 477654 36789999999998877 4578899999999999998876 4678889999999
Q ss_pred ecccCcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCC
Q 048566 402 SFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRL 481 (760)
Q Consensus 402 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 481 (760)
++++|.+..+|..+. ++|++|++++| .+..+++..++++++|++|++++|.+.. ....+..+..+ +|
T Consensus 108 ~L~~n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~~~l-~L 174 (332)
T 2ft3_A 108 YISKNHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLEN---------SGFEPGAFDGL-KL 174 (332)
T ss_dssp ECCSSCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBG---------GGSCTTSSCSC-CC
T ss_pred ECCCCcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCcccc---------CCCCcccccCC-cc
Confidence 999999888887665 78999999987 6888888778889999999999887641 11224455566 78
Q ss_pred CEEEEEeccCCCCCcchhccccceeEEEecCC
Q 048566 482 TTLEIDVKNDSILPEGFLARKLERFKISIGNE 513 (760)
Q Consensus 482 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 513 (760)
+.|+++++....+|.... ++|+.|+++.|.+
T Consensus 175 ~~L~l~~n~l~~l~~~~~-~~L~~L~l~~n~i 205 (332)
T 2ft3_A 175 NYLRISEAKLTGIPKDLP-ETLNELHLDHNKI 205 (332)
T ss_dssp SCCBCCSSBCSSCCSSSC-SSCSCCBCCSSCC
T ss_pred CEEECcCCCCCccCcccc-CCCCEEECCCCcC
Confidence 888888877766665433 5677776666553
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=3.8e-19 Score=186.16 Aligned_cols=169 Identities=20% Similarity=0.316 Sum_probs=124.7
Q ss_pred CccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChh-hhhhhccCCeeEecCCCCCC--cccccccccccee
Q 048566 325 NLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPS-SIDLLVNLHTLCLDQSALGD--IAIIGKLKNLEVL 401 (760)
Q Consensus 325 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L 401 (760)
+++.++++ ...+. .+|..+ .++|++|+++++.+..++. .++++++|++|++++|.+.. |..++++++|++|
T Consensus 32 ~l~~l~~~--~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 32 HLRVVQCS--DLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp ETTEEECT--TSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCeEEEec--CCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 67777776 33343 466543 2578888999888887754 68888889999998888876 4678888899999
Q ss_pred ecccCcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCC
Q 048566 402 SFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRL 481 (760)
Q Consensus 402 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 481 (760)
++++|.+..+|..+. ++|++|++++| .+..+++..+.++++|++|++++|.+.. ....+..+..+++|
T Consensus 106 ~Ls~n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~~~l~~L 173 (330)
T 1xku_A 106 YLSKNQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKS---------SGIENGAFQGMKKL 173 (330)
T ss_dssp ECCSSCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCG---------GGBCTTGGGGCTTC
T ss_pred ECCCCcCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCc---------cCcChhhccCCCCc
Confidence 999888888887654 78899999887 6777777778888999999988887641 11234567788888
Q ss_pred CEEEEEeccCCCCCcchhccccceeEEEecC
Q 048566 482 TTLEIDVKNDSILPEGFLARKLERFKISIGN 512 (760)
Q Consensus 482 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 512 (760)
+.|+++++....+|.... ++|+.|+++.|.
T Consensus 174 ~~L~l~~n~l~~l~~~~~-~~L~~L~l~~n~ 203 (330)
T 1xku_A 174 SYIRIADTNITTIPQGLP-PSLTELHLDGNK 203 (330)
T ss_dssp CEEECCSSCCCSCCSSCC-TTCSEEECTTSC
T ss_pred CEEECCCCccccCCcccc-ccCCEEECCCCc
Confidence 888888877766655433 566666655444
No 47
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.81 E-value=1.2e-18 Score=189.55 Aligned_cols=323 Identities=21% Similarity=0.203 Sum_probs=208.0
Q ss_pred ccccceEEEeecCCCCCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCee
Q 048566 300 ALRKCKAITLRYDSNRHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTL 379 (760)
Q Consensus 300 ~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L 379 (760)
.+++++.+.+.++....+|.. .++|+.|+++ .+.+. .++. ..++|++|++++|.+..+| .++++++|++|
T Consensus 89 ~~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~--~n~l~-~l~~----~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L 158 (454)
T 1jl5_A 89 LPPHLESLVASCNSLTELPEL--PQSLKSLLVD--NNNLK-ALSD----LPPLLEYLGVSNNQLEKLP-ELQNSSFLKII 158 (454)
T ss_dssp CCTTCSEEECCSSCCSSCCCC--CTTCCEEECC--SSCCS-CCCS----CCTTCCEEECCSSCCSSCC-CCTTCTTCCEE
T ss_pred CcCCCCEEEccCCcCCccccc--cCCCcEEECC--CCccC-cccC----CCCCCCEEECcCCCCCCCc-ccCCCCCCCEE
Confidence 356889999986666777754 4899999998 45554 2432 1268999999999999988 59999999999
Q ss_pred EecCCCCCCccccccccccceeecccCcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchh
Q 048566 380 CLDQSALGDIAIIGKLKNLEVLSFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWE 459 (760)
Q Consensus 380 ~l~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~ 459 (760)
++++|.+..++.. ..+|++|++++|.+..+| .++++++|++|++++| .+..+|.. .++|++|++++|.+. .
T Consensus 159 ~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~----~~~L~~L~l~~n~l~-~ 229 (454)
T 1jl5_A 159 DVDNNSLKKLPDL--PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN-SLKKLPDL----PLSLESIVAGNNILE-E 229 (454)
T ss_dssp ECCSSCCSCCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS-CCSSCCCC----CTTCCEEECCSSCCS-S
T ss_pred ECCCCcCcccCCC--cccccEEECcCCcCCcCc-cccCCCCCCEEECCCC-cCCcCCCC----cCcccEEECcCCcCC-c
Confidence 9999998874322 358999999999999988 6899999999999998 67766652 368999999999764 1
Q ss_pred hhhccccccCCChhhhcCCCCCCEEEEEeccCCCCCcchhccccceeEEEecCCCCCCCccccccccCCCCccccccccc
Q 048566 460 VERANSKRSNASLDELMHLPRLTTLEIDVKNDSILPEGFLARKLERFKISIGNESFMPPKCVRQDWFQSQPHFSINSDRK 539 (760)
Q Consensus 460 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 539 (760)
+..++.+++|+.|+++++....+|.. .++|+.|+++.|.+..+|.. ..
T Consensus 230 ------------lp~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~l~~l~~~------------------~~ 277 (454)
T 1jl5_A 230 ------------LPELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTDLPEL------------------PQ 277 (454)
T ss_dssp ------------CCCCTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSCCSCCCCC------------------CT
T ss_pred ------------ccccCCCCCCCEEECCCCcCCccccc--ccccCEEECCCCcccccCcc------------------cC
Confidence 22477899999999999888777653 48899999998886665432 23
Q ss_pred ccceeeeccCccccccccccCccceeEEEeccccCccccccccCcccc-CCCcEEeeccCCCceeeecCCCCcccccccc
Q 048566 540 SLRALKLKLDFMDICSMKLQGINNVECLWLDKLQGIGDVLFNLDTEGF-SQLKLLWVQNNPDIFCIVDSREMVACDAFPL 618 (760)
Q Consensus 540 ~l~~l~l~~~~~~l~~l~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~ 618 (760)
+++.+.++.+. +..+ ....++|+.|.+..+.-.. . ..+ ++|++|+++++ .+..++ ..+++
T Consensus 278 ~L~~L~ls~N~--l~~l-~~~~~~L~~L~l~~N~l~~-i------~~~~~~L~~L~Ls~N-~l~~lp--------~~~~~ 338 (454)
T 1jl5_A 278 SLTFLDVSENI--FSGL-SELPPNLYYLNASSNEIRS-L------CDLPPSLEELNVSNN-KLIELP--------ALPPR 338 (454)
T ss_dssp TCCEEECCSSC--CSEE-SCCCTTCCEEECCSSCCSE-E------CCCCTTCCEEECCSS-CCSCCC--------CCCTT
T ss_pred cCCEEECcCCc--cCcc-cCcCCcCCEEECcCCcCCc-c------cCCcCcCCEEECCCC-cccccc--------ccCCc
Confidence 66777776654 3321 1122678888877653221 1 123 58999999876 344443 23688
Q ss_pred cchhhhcccccccccccccccccccCCccEEEEecCCCCC--cccchhhhhcc-------------CCCcEEEEecCCcc
Q 048566 619 LESLILHNLINMERVCIDRLKVESFNQLKNIEAYNCDKLS--NIFWLSTTKCL-------------PRLERIAVVNCSKM 683 (760)
Q Consensus 619 L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~--~l~~~~~~~~l-------------~~L~~L~l~~c~~L 683 (760)
|++|+++++ .++.++ . .+++|+.|++++++-.. .+|. .+..+ ++|++|++++++ +
T Consensus 339 L~~L~L~~N-~l~~lp-----~-~l~~L~~L~L~~N~l~~l~~ip~--~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~-l 408 (454)
T 1jl5_A 339 LERLIASFN-HLAEVP-----E-LPQNLKQLHVEYNPLREFPDIPE--SVEDLRMNSHLAEVPELPQNLKQLHVETNP-L 408 (454)
T ss_dssp CCEEECCSS-CCSCCC-----C-CCTTCCEEECCSSCCSSCCCCCT--TCCEEECCC-----------------------
T ss_pred CCEEECCCC-cccccc-----c-hhhhccEEECCCCCCCcCCCChH--HHHhhhhcccccccccccCcCCEEECCCCc-C
Confidence 999999876 455443 2 47889999998864333 3332 44555 889999999874 4
Q ss_pred hhhhccccccccccccccccccCeeecCCCc
Q 048566 684 KEIFAIGEEVDNAIEKIEFAQLRSLSLGNLP 714 (760)
Q Consensus 684 ~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 714 (760)
+.++. -.++|+.|++.+|.
T Consensus 409 ~~~~~------------iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 409 REFPD------------IPESVEDLRMNSER 427 (454)
T ss_dssp -------------------------------
T ss_pred Ccccc------------chhhHhheeCcCcc
Confidence 43321 02457788887774
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=2.4e-18 Score=180.07 Aligned_cols=148 Identities=22% Similarity=0.280 Sum_probs=115.7
Q ss_pred CCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCC--ccccccccccceeecccCccccc-chhhhcCCCCCEEecc
Q 048566 351 KKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGD--IAIIGKLKNLEVLSFLMSDIMQL-PEELGQLNKLRLLDLT 427 (760)
Q Consensus 351 ~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~ 427 (760)
.++++++++++.+..+|..+. ++|++|++++|.+.. +..++++.+|++|++++|.+..+ |..++++++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 368999999999999998764 689999999999887 35799999999999999999977 6789999999999999
Q ss_pred ccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEeccCCC---CCcchhccccc
Q 048566 428 NCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDSI---LPEGFLARKLE 504 (760)
Q Consensus 428 ~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---~~~~~~~~~L~ 504 (760)
+| .+..+|... . ++|++|++++|.+.. .....+..+++|+.|+++++.... .+......+|+
T Consensus 111 ~n-~l~~l~~~~-~--~~L~~L~l~~n~i~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~ 175 (332)
T 2ft3_A 111 KN-HLVEIPPNL-P--SSLVELRIHDNRIRK-----------VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLN 175 (332)
T ss_dssp SS-CCCSCCSSC-C--TTCCEEECCSSCCCC-----------CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCS
T ss_pred CC-cCCccCccc-c--ccCCEEECCCCccCc-----------cCHhHhCCCccCCEEECCCCccccCCCCcccccCCccC
Confidence 98 788888753 2 899999999997741 223457889999999999876532 12211112666
Q ss_pred eeEEEecCCCC
Q 048566 505 RFKISIGNESF 515 (760)
Q Consensus 505 ~L~l~~~~~~~ 515 (760)
.|+++.|.+..
T Consensus 176 ~L~l~~n~l~~ 186 (332)
T 2ft3_A 176 YLRISEAKLTG 186 (332)
T ss_dssp CCBCCSSBCSS
T ss_pred EEECcCCCCCc
Confidence 66666665443
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.79 E-value=1.2e-18 Score=181.39 Aligned_cols=136 Identities=24% Similarity=0.283 Sum_probs=99.6
Q ss_pred hccCCeeEecCCCCCC-ccccccccccceeecccCcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEc
Q 048566 373 LVNLHTLCLDQSALGD-IAIIGKLKNLEVLSFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYM 451 (760)
Q Consensus 373 l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l 451 (760)
..++++|++++|.+.. |+.++++++|++|++++|.+..+|..++++++|++|++++| .+..+|.. ++++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~-l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPAS-IASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGG-GGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHH-HhcCcCCCEEEC
Confidence 4789999999999988 77799999999999999999999999999999999999998 67778765 899999999999
Q ss_pred cccccchhhhhccccccCCChhhhcCCCCCCEEEEEeccCCCCCcch-hccccceeEEEecC
Q 048566 452 GNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDSILPEGF-LARKLERFKISIGN 512 (760)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~ 512 (760)
++|...+.++.... .......++.+++|+.|+++++....+|... .+++|+.|+++.|.
T Consensus 158 ~~n~~~~~~p~~~~--~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~ 217 (328)
T 4fcg_A 158 RACPELTELPEPLA--STDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP 217 (328)
T ss_dssp EEETTCCCCCSCSE--EEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC
T ss_pred CCCCCccccChhHh--hccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC
Confidence 99877644431100 0011122445777777777766655555432 23455555554443
No 50
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=5.4e-18 Score=190.16 Aligned_cols=78 Identities=15% Similarity=0.097 Sum_probs=56.5
Q ss_pred cCCCcEEeeccCCCceeeecCCCCcccccccccchhhhcccccccccccccccccccCCccEEEEecCCCCCcccchhhh
Q 048566 587 FSQLKLLWVQNNPDIFCIVDSREMVACDAFPLLESLILHNLINMERVCIDRLKVESFNQLKNIEAYNCDKLSNIFWLSTT 666 (760)
Q Consensus 587 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~ 666 (760)
+++|+.|++++| .++.++ ..+++|+.|+++++ +++.++. .+++|+.|++++| +++.+|. .+
T Consensus 220 ~~~L~~L~Ls~N-~L~~lp--------~~l~~L~~L~Ls~N-~L~~lp~------~~~~L~~L~Ls~N-~L~~lp~--~l 280 (622)
T 3g06_A 220 PSGLKELIVSGN-RLTSLP--------VLPSELKELMVSGN-RLTSLPM------LPSGLLSLSVYRN-QLTRLPE--SL 280 (622)
T ss_dssp CTTCCEEECCSS-CCSCCC--------CCCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCSS-CCCSCCG--GG
T ss_pred CCCCCEEEccCC-ccCcCC--------CCCCcCcEEECCCC-CCCcCCc------ccccCcEEeCCCC-CCCcCCH--HH
Confidence 477888888866 454442 35678888888875 4555532 5788999999886 6777764 67
Q ss_pred hccCCCcEEEEecCCcc
Q 048566 667 KCLPRLERIAVVNCSKM 683 (760)
Q Consensus 667 ~~l~~L~~L~l~~c~~L 683 (760)
..+++|+.|++++|+--
T Consensus 281 ~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 281 IHLSSETTVNLEGNPLS 297 (622)
T ss_dssp GGSCTTCEEECCSCCCC
T ss_pred hhccccCEEEecCCCCC
Confidence 88999999999988643
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.78 E-value=1.2e-18 Score=180.39 Aligned_cols=66 Identities=12% Similarity=-0.008 Sum_probs=47.4
Q ss_pred ccCCccEEEEecCCCCCcccchhhhhccCCCcEEEEecCCcchhhhccccccccccccccccccCeeecCCCcccccc
Q 048566 642 SFNQLKNIEAYNCDKLSNIFWLSTTKCLPRLERIAVVNCSKMKEIFAIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSF 719 (760)
Q Consensus 642 ~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~ 719 (760)
.+++|+.|++++|.--..+|. .+..+++|++|++++|.--..+| ....+++|+.|++.++|.+...
T Consensus 242 ~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~ip----------~~~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 242 LSKNLNGLDLRNNRIYGTLPQ--GLTQLKFLHSLNVSFNNLCGEIP----------QGGNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp CCTTCCEEECCSSCCEECCCG--GGGGCTTCCEEECCSSEEEEECC----------CSTTGGGSCGGGTCSSSEEEST
T ss_pred ccCCCCEEECcCCcccCcCCh--HHhcCcCCCEEECcCCcccccCC----------CCccccccChHHhcCCCCccCC
Confidence 467788888887643334443 67888999999999984333454 3367899999999999877643
No 52
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=1.5e-17 Score=174.05 Aligned_cols=149 Identities=20% Similarity=0.231 Sum_probs=118.9
Q ss_pred CCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCC-c-cccccccccceeecccCccccc-chhhhcCCCCCEEec
Q 048566 350 MKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGD-I-AIIGKLKNLEVLSFLMSDIMQL-PEELGQLNKLRLLDL 426 (760)
Q Consensus 350 l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l 426 (760)
..++++++++++.+..+|..+. ++|++|++++|.+.. + ..++++++|++|++++|.+..+ |..++++++|++|++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred cCCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 3478999999999999997664 689999999999988 3 4699999999999999999987 778999999999999
Q ss_pred cccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEeccCCC---CC-cchhccc
Q 048566 427 TNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDSI---LP-EGFLARK 502 (760)
Q Consensus 427 ~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---~~-~~~~~~~ 502 (760)
++| .+..+|... .++|++|++++|.+. ......+..+++|+.|+++++.... .+ ....+++
T Consensus 108 s~n-~l~~l~~~~---~~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 172 (330)
T 1xku_A 108 SKN-QLKELPEKM---PKTLQELRVHENEIT-----------KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172 (330)
T ss_dssp CSS-CCSBCCSSC---CTTCCEEECCSSCCC-----------BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred CCC-cCCccChhh---cccccEEECCCCccc-----------ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCC
Confidence 998 688887652 389999999999775 2234568899999999999877542 11 1223467
Q ss_pred cceeEEEecCCCC
Q 048566 503 LERFKISIGNESF 515 (760)
Q Consensus 503 L~~L~l~~~~~~~ 515 (760)
|+.|+++.|.+..
T Consensus 173 L~~L~l~~n~l~~ 185 (330)
T 1xku_A 173 LSYIRIADTNITT 185 (330)
T ss_dssp CCEEECCSSCCCS
T ss_pred cCEEECCCCcccc
Confidence 7777776666443
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=1.8e-18 Score=182.75 Aligned_cols=129 Identities=24% Similarity=0.335 Sum_probs=72.5
Q ss_pred CceEEEecCCCCCCChh-hhhhhccCCeeEecCCCCCC--ccccccccccceeecccCcccccchh-hhcCCCCCEEecc
Q 048566 352 KLRVLDFTRMQFSSFPS-SIDLLVNLHTLCLDQSALGD--IAIIGKLKNLEVLSFLMSDIMQLPEE-LGQLNKLRLLDLT 427 (760)
Q Consensus 352 ~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~ 427 (760)
+|++|+++++.+..+|. .+.++++|++|++++|.+.. +..++++++|++|++++|.+..+|.. ++++++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 56666666666665543 55666666666666666555 23466666666666666666666544 5566666666666
Q ss_pred ccccccccCc-ccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEeccC
Q 048566 428 NCFHLKVIAP-NLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKND 491 (760)
Q Consensus 428 ~~~~l~~~~~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 491 (760)
+| .+..++. ..++++++|++|++++|.....+ .+..++.+++|+.|+++++..
T Consensus 133 ~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~----------~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 133 GN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKI----------QRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp TC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEE----------CTTTTTTCCEEEEEEEEETTC
T ss_pred CC-CCcccCchhhhccCCCCcEEECCCCcccccc----------CHHHccCCCCCCEEECCCCCc
Confidence 65 4555554 34556666666666665322111 123445555555555555543
No 54
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=9.1e-18 Score=173.78 Aligned_cols=150 Identities=17% Similarity=0.267 Sum_probs=81.0
Q ss_pred CccEEEeeccCCcccc--cCCchhhcCCCCceEEEecC-CCCC-CChhhhhhhccCCeeEecCCCCCC--cccccccccc
Q 048566 325 NLEFLCISLKDSSLEI--NIPGNFFIGMKKLRVLDFTR-MQFS-SFPSSIDLLVNLHTLCLDQSALGD--IAIIGKLKNL 398 (760)
Q Consensus 325 ~Lr~L~l~~~~~~~~~--~~~~~~~~~l~~Lr~L~l~~-~~~~-~lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L 398 (760)
+++.|+++ ++.+.+ .+|.. |.++++|++|++++ +.+. .+|..++++++|++|++++|.+.. |..++++++|
T Consensus 51 ~l~~L~L~--~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 51 RVNNLDLS--GLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CEEEEEEE--CCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred eEEEEECC--CCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 45555555 333333 34433 35566666666663 5444 455566666666666666666542 4456666666
Q ss_pred ceeecccCccc-ccchhhhcCCCCCEEecccccccc-ccCcccccCCC-CCCEEEccccccchhhhhccccccCCChhhh
Q 048566 399 EVLSFLMSDIM-QLPEELGQLNKLRLLDLTNCFHLK-VIAPNLISSLT-RLEELYMGNCFIEWEVERANSKRSNASLDEL 475 (760)
Q Consensus 399 ~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~-~~~~~~i~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l 475 (760)
++|++++|.+. .+|..++.+++|++|++++| .+. .+|. .+++++ +|++|++++|.+.+.+ +..+
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~-~l~~l~~~L~~L~L~~N~l~~~~-----------~~~~ 194 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPD-SYGSFSKLFTSMTISRNRLTGKI-----------PPTF 194 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCG-GGGCCCTTCCEEECCSSEEEEEC-----------CGGG
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCH-HHhhhhhcCcEEECcCCeeeccC-----------ChHH
Confidence 66666666555 45555666666666666665 343 3333 255555 6666666666543222 3344
Q ss_pred cCCCCCCEEEEEeccC
Q 048566 476 MHLPRLTTLEIDVKND 491 (760)
Q Consensus 476 ~~l~~L~~L~l~~~~~ 491 (760)
..++ |+.|+++++..
T Consensus 195 ~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 195 ANLN-LAFVDLSRNML 209 (313)
T ss_dssp GGCC-CSEEECCSSEE
T ss_pred hCCc-ccEEECcCCcc
Confidence 4444 66666655543
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=4.7e-17 Score=182.52 Aligned_cols=256 Identities=18% Similarity=0.140 Sum_probs=166.7
Q ss_pred cceEEEeecCCCCCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeEec
Q 048566 303 KCKAITLRYDSNRHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLD 382 (760)
Q Consensus 303 ~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 382 (760)
.++.+.+.++....+|.... ++|+.|+++ ++.+. .+|. .+++|++|++++|.++.+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~--~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIP--DNNLT-SLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEEC--SCCCS-CCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEec--CCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence 35666666555566665443 778888887 44454 4554 46778888888888887776 66788888888
Q ss_pred CCCCCCccccccccccceeecccCcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhh
Q 048566 383 QSALGDIAIIGKLKNLEVLSFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVER 462 (760)
Q Consensus 383 ~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~ 462 (760)
+|.+..++. .+.+|++|++++|++..+|.. +++|++|++++| .+..+|. .+.+|+.|++++|.+..
T Consensus 110 ~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l~~---- 175 (622)
T 3g06_A 110 SNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQLTS---- 175 (622)
T ss_dssp SCCCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSC----
T ss_pred CCcCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCCCC----
Confidence 888777433 567788888888888777753 477888888887 5666654 34677788887776641
Q ss_pred ccccccCCChhhhcCCCCCCEEEEEeccCCCCCcchhccccceeEEEecCCCCCCCccccccccCCCCcccccccccccc
Q 048566 463 ANSKRSNASLDELMHLPRLTTLEIDVKNDSILPEGFLARKLERFKISIGNESFMPPKCVRQDWFQSQPHFSINSDRKSLR 542 (760)
Q Consensus 463 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 542 (760)
.+ ..+++|+.|++++|....++.. .++|+.|.++.|.+..+|.
T Consensus 176 --------l~---~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~l~~------------------------ 218 (622)
T 3g06_A 176 --------LP---MLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPA------------------------ 218 (622)
T ss_dssp --------CC---CCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCC------------------------
T ss_pred --------Cc---ccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCCcccccCC------------------------
Confidence 11 3456777777777776665543 3667777776665443321
Q ss_pred eeeeccCccccccccccCccceeEEEeccccCccccccccCccccCCCcEEeeccCCCceeeecCCCCcccccccccchh
Q 048566 543 ALKLKLDFMDICSMKLQGINNVECLWLDKLQGIGDVLFNLDTEGFSQLKLLWVQNNPDIFCIVDSREMVACDAFPLLESL 622 (760)
Q Consensus 543 ~l~l~~~~~~l~~l~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L 622 (760)
.+++|+.|.+.++.- .... ..+++|+.|++++| .++.++. .+++|+.|
T Consensus 219 -----------------~~~~L~~L~Ls~N~L-~~lp-----~~l~~L~~L~Ls~N-~L~~lp~--------~~~~L~~L 266 (622)
T 3g06_A 219 -----------------LPSGLKELIVSGNRL-TSLP-----VLPSELKELMVSGN-RLTSLPM--------LPSGLLSL 266 (622)
T ss_dssp -----------------CCTTCCEEECCSSCC-SCCC-----CCCTTCCEEECCSS-CCSCCCC--------CCTTCCEE
T ss_pred -----------------CCCCCCEEEccCCcc-CcCC-----CCCCcCcEEECCCC-CCCcCCc--------ccccCcEE
Confidence 123444444443311 1111 33678888888876 5555531 56788888
Q ss_pred hhcccccccccccccccccccCCccEEEEecCCC
Q 048566 623 ILHNLINMERVCIDRLKVESFNQLKNIEAYNCDK 656 (760)
Q Consensus 623 ~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~ 656 (760)
+++++ +++.++. ....+++|+.|++.+++-
T Consensus 267 ~Ls~N-~L~~lp~---~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 267 SVYRN-QLTRLPE---SLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp ECCSS-CCCSCCG---GGGGSCTTCEEECCSCCC
T ss_pred eCCCC-CCCcCCH---HHhhccccCEEEecCCCC
Confidence 88876 4556653 456788899999988753
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=4e-17 Score=168.74 Aligned_cols=192 Identities=22% Similarity=0.202 Sum_probs=145.8
Q ss_pred EEeecCCCCCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCC---hhhhhhhccCCeeEecC
Q 048566 307 ITLRYDSNRHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSF---PSSIDLLVNLHTLCLDQ 383 (760)
Q Consensus 307 l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l---p~~i~~l~~L~~L~l~~ 383 (760)
+.........+|... .++++.|+++ ++.+. .+|..+|.++++|++|++++|.+..+ |..+..+++|++|++++
T Consensus 12 l~c~~~~l~~ip~~~-~~~l~~L~L~--~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 12 IRCNSKGLTSVPTGI-PSSATRLELE--SNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EECCSSCCSSCCSCC-CTTCCEEECC--SSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEcCCCCcccCCCCC-CCCCCEEECC--CCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 333333345566533 3689999998 45555 58888889999999999999988755 67788899999999999
Q ss_pred CCCCC-ccccccccccceeecccCcccccch--hhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhh
Q 048566 384 SALGD-IAIIGKLKNLEVLSFLMSDIMQLPE--ELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEV 460 (760)
Q Consensus 384 ~~l~~-~~~~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~ 460 (760)
|.+.. +..+..+++|++|++++|.+..++. .+.++++|++|++++| .+...++..++.+++|++|++++|.+...
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~- 165 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQEN- 165 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCEEGGG-
T ss_pred CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCccccc-
Confidence 99877 6678899999999999998888764 6888999999999998 56666666688899999999999877521
Q ss_pred hhccccccCCChhhhcCCCCCCEEEEEeccCCCCCcc--hhccccceeEEEecCC
Q 048566 461 ERANSKRSNASLDELMHLPRLTTLEIDVKNDSILPEG--FLARKLERFKISIGNE 513 (760)
Q Consensus 461 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~ 513 (760)
..+..+..+++|+.|+++++.....+.. ..+++|+.|+++.|.+
T Consensus 166 ---------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 211 (306)
T 2z66_A 166 ---------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211 (306)
T ss_dssp ---------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred ---------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCcc
Confidence 1245677888999999988876554322 2346677777766653
No 57
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.72 E-value=1.5e-19 Score=198.75 Aligned_cols=357 Identities=17% Similarity=0.146 Sum_probs=174.6
Q ss_pred CCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCC-----CChhhhhhhccCCeeEecCCCCCC--ccccc-cc
Q 048566 324 PNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFS-----SFPSSIDLLVNLHTLCLDQSALGD--IAIIG-KL 395 (760)
Q Consensus 324 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~l~~--~~~~~-~l 395 (760)
++|+.|+++ ++.+.......++..+++|++|++++|.+. .++..+..+++|++|++++|.+.+ +..+. .+
T Consensus 3 ~~l~~L~Ls--~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQ--CEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEE--SCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred ccceehhhh--hcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 345566665 233321122233556666777777777665 345556666677777777766544 22222 23
Q ss_pred c----ccceeecccCccc-----ccchhhhcCCCCCEEeccccccccccCcccc-----cCCCCCCEEEccccccchhhh
Q 048566 396 K----NLEVLSFLMSDIM-----QLPEELGQLNKLRLLDLTNCFHLKVIAPNLI-----SSLTRLEELYMGNCFIEWEVE 461 (760)
Q Consensus 396 ~----~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i-----~~l~~L~~L~l~~~~~~~~~~ 461 (760)
. +|++|++++|.+. .+|..+.++++|++|++++|. +.......+ ...++|++|++++|.+....
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~- 158 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS- 158 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG-
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH-
Confidence 3 5777777777665 345666666777777776663 432211111 22456777777766554211
Q ss_pred hccccccCCChhhhcCCCCCCEEEEEeccCCCCCcchh-------ccccceeEEEecCCCCCCCccccccccCCCCccc-
Q 048566 462 RANSKRSNASLDELMHLPRLTTLEIDVKNDSILPEGFL-------ARKLERFKISIGNESFMPPKCVRQDWFQSQPHFS- 533 (760)
Q Consensus 462 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-------~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~~~~- 533 (760)
.......+..+++|+.|+++++.......... .++|+.|+++.|.+..... ..+.
T Consensus 159 ------~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-----------~~l~~ 221 (461)
T 1z7x_W 159 ------CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC-----------RDLCG 221 (461)
T ss_dssp ------HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH-----------HHHHH
T ss_pred ------HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH-----------HHHHH
Confidence 01123345556667777766655322111110 1366666666654322100 0000
Q ss_pred ccccccccceeeeccCccccc---ccc---ccCccceeEEEeccccCcccccc--ccCccccCCCcEEeeccCCCceeee
Q 048566 534 INSDRKSLRALKLKLDFMDIC---SMK---LQGINNVECLWLDKLQGIGDVLF--NLDTEGFSQLKLLWVQNNPDIFCIV 605 (760)
Q Consensus 534 ~~~~~~~l~~l~l~~~~~~l~---~l~---~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~l~~i~ 605 (760)
.....++++.|+++.+...-. .+. ...+++|+.|.+..+.-...... ...+..+++|++|+++++. +....
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~ 300 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEG 300 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHH
T ss_pred HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHH
Confidence 001234555555554432110 000 12356777777776632211000 0012346778888887663 22110
Q ss_pred cCCCCc-ccccccccchhhhcccccccccccccc--cccccCCccEEEEecCCCCCcccchhhhh----ccCCCcEEEEe
Q 048566 606 DSREMV-ACDAFPLLESLILHNLINMERVCIDRL--KVESFNQLKNIEAYNCDKLSNIFWLSTTK----CLPRLERIAVV 678 (760)
Q Consensus 606 ~~~~~~-~~~~~p~L~~L~l~~~~~l~~~~~~~~--~~~~~~~L~~L~l~~C~~L~~l~~~~~~~----~l~~L~~L~l~ 678 (760)
...... -....++|++|++++|. +.......+ ....+++|+.|++++| .+++........ ..++|++|+++
T Consensus 301 ~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~ 378 (461)
T 1z7x_W 301 ARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLA 378 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECC
Confidence 000000 00122577888887764 222110000 1234577888888776 454432211111 15678888888
Q ss_pred cCCcch-----hhhccccccccccccccccccCeeecCCCc
Q 048566 679 NCSKMK-----EIFAIGEEVDNAIEKIEFAQLRSLSLGNLP 714 (760)
Q Consensus 679 ~c~~L~-----~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 714 (760)
+| .++ .++ ..+..+++|++|++++|+
T Consensus 379 ~n-~i~~~~~~~l~---------~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 379 DC-DVSDSSCSSLA---------ATLLANHSLRELDLSNNC 409 (461)
T ss_dssp TS-CCCHHHHHHHH---------HHHHHCCCCCEEECCSSS
T ss_pred CC-CCChhhHHHHH---------HHHHhCCCccEEECCCCC
Confidence 87 344 233 244557788888888774
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=2.8e-18 Score=178.13 Aligned_cols=252 Identities=14% Similarity=0.077 Sum_probs=151.9
Q ss_pred CCchhhcCCCCceEEEecCCCCCCCh-hhhhhhccCCeeEecCCCCCCccccccccccceeecccCcccccchhhhcCCC
Q 048566 342 IPGNFFIGMKKLRVLDFTRMQFSSFP-SSIDLLVNLHTLCLDQSALGDIAIIGKLKNLEVLSFLMSDIMQLPEELGQLNK 420 (760)
Q Consensus 342 ~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~ 420 (760)
.+..++..+++|++|++++|.+..++ ..++.+++|++|++++|.+.....++.+++|++|++++|.+..+| ..++
T Consensus 25 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~----~~~~ 100 (317)
T 3o53_A 25 ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL----VGPS 100 (317)
T ss_dssp HHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE----ECTT
T ss_pred hHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc----CCCC
Confidence 44455666777888888888877664 577778888888888887766434777788888888888777665 2377
Q ss_pred CCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEeccCCCCCcchhc
Q 048566 421 LRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDSILPEGFLA 500 (760)
Q Consensus 421 L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 500 (760)
|++|++++| .+..++.. .+++|++|++++|.+.... ...++.+++|+.|+++++.....+...
T Consensus 101 L~~L~l~~n-~l~~~~~~---~~~~L~~L~l~~N~l~~~~-----------~~~~~~l~~L~~L~Ls~N~l~~~~~~~-- 163 (317)
T 3o53_A 101 IETLHAANN-NISRVSCS---RGQGKKNIYLANNKITMLR-----------DLDEGCRSRVQYLDLKLNEIDTVNFAE-- 163 (317)
T ss_dssp CCEEECCSS-CCSEEEEC---CCSSCEEEECCSSCCCSGG-----------GBCTGGGSSEEEEECTTSCCCEEEGGG--
T ss_pred cCEEECCCC-ccCCcCcc---ccCCCCEEECCCCCCCCcc-----------chhhhccCCCCEEECCCCCCCcccHHH--
Confidence 777877776 56555543 3567777777777654211 223444455555555433322111000
Q ss_pred cccceeEEEecCCCCCCCccccccccCCCCcccccccccccceeeeccCccccccccccCccceeEEEeccccCcccccc
Q 048566 501 RKLERFKISIGNESFMPPKCVRQDWFQSQPHFSINSDRKSLRALKLKLDFMDICSMKLQGINNVECLWLDKLQGIGDVLF 580 (760)
Q Consensus 501 ~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~l~~l~~~~l~~L~~L~l~~~~~~~~~~~ 580 (760)
T Consensus 164 -------------------------------------------------------------------------------- 163 (317)
T 3o53_A 164 -------------------------------------------------------------------------------- 163 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCccccCCCcEEeeccCCCceeeecCCCCcccccccccchhhhcccccccccccccccccccCCccEEEEecCCCCCcc
Q 048566 581 NLDTEGFSQLKLLWVQNNPDIFCIVDSREMVACDAFPLLESLILHNLINMERVCIDRLKVESFNQLKNIEAYNCDKLSNI 660 (760)
Q Consensus 581 ~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l 660 (760)
....+++|++|++++|. ++.++ ....+++|++|+++++ .++.++. ....+++|+.|++++| .++.+
T Consensus 164 --~~~~l~~L~~L~L~~N~-l~~~~------~~~~l~~L~~L~Ls~N-~l~~l~~---~~~~l~~L~~L~L~~N-~l~~l 229 (317)
T 3o53_A 164 --LAASSDTLEHLNLQYNF-IYDVK------GQVVFAKLKTLDLSSN-KLAFMGP---EFQSAAGVTWISLRNN-KLVLI 229 (317)
T ss_dssp --GGGGTTTCCEEECTTSC-CCEEE------CCCCCTTCCEEECCSS-CCCEECG---GGGGGTTCSEEECTTS-CCCEE
T ss_pred --HhhccCcCCEEECCCCc-Ccccc------cccccccCCEEECCCC-cCCcchh---hhcccCcccEEECcCC-cccch
Confidence 00124555555555442 33332 1123555666655543 2333332 2445778888888875 66666
Q ss_pred cchhhhhccCCCcEEEEecCCcc-hhhhccccccccccccccccccCeeecCCCcccccc
Q 048566 661 FWLSTTKCLPRLERIAVVNCSKM-KEIFAIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSF 719 (760)
Q Consensus 661 ~~~~~~~~l~~L~~L~l~~c~~L-~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~ 719 (760)
+. .+..+++|++|++++|+-. ..++ ..+..+++|+.|++.+++.++..
T Consensus 230 ~~--~~~~l~~L~~L~l~~N~~~~~~~~---------~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 230 EK--ALRFSQNLEHFDLRGNGFHCGTLR---------DFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp CT--TCCCCTTCCEEECTTCCCBHHHHH---------HHHHTCHHHHHHHHHHHHHHHSS
T ss_pred hh--HhhcCCCCCEEEccCCCccCcCHH---------HHHhccccceEEECCCchhccCC
Confidence 54 4677888888888888644 2222 24566788888888877777654
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.71 E-value=3.5e-17 Score=172.81 Aligned_cols=191 Identities=21% Similarity=0.240 Sum_probs=156.6
Q ss_pred cCCCCCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCC-hhhhhhhccCCeeEecCCCCCC-
Q 048566 311 YDSNRHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSF-PSSIDLLVNLHTLCLDQSALGD- 388 (760)
Q Consensus 311 ~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~- 388 (760)
++....+|... .++|+.|+++ ++.+. .++...|.++++|++|++++|.+..+ |..++++++|++|++++|.+..
T Consensus 40 ~~~l~~iP~~~-~~~L~~L~l~--~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 115 (353)
T 2z80_A 40 SGSLNSIPSGL-TEAVKSLDLS--NNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115 (353)
T ss_dssp STTCSSCCTTC-CTTCCEEECT--TSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC
T ss_pred CCCcccccccc-cccCcEEECC--CCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC
Confidence 44446666543 2589999998 55565 46776779999999999999999876 5679999999999999999988
Q ss_pred ccc-cccccccceeecccCcccccch--hhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccc
Q 048566 389 IAI-IGKLKNLEVLSFLMSDIMQLPE--ELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANS 465 (760)
Q Consensus 389 ~~~-~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 465 (760)
++. ++++++|++|++++|.+..+|. .+.++++|++|++++|..+..+++..++++++|++|++++|.+..
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~------- 188 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS------- 188 (353)
T ss_dssp CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-------
T ss_pred CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc-------
Confidence 444 8899999999999999999987 688999999999999866888877778999999999999997752
Q ss_pred cccCCChhhhcCCCCCCEEEEEeccCCCCCcch--hccccceeEEEecCCCCC
Q 048566 466 KRSNASLDELMHLPRLTTLEIDVKNDSILPEGF--LARKLERFKISIGNESFM 516 (760)
Q Consensus 466 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~l 516 (760)
..+..++.+++|+.|+++++....++... .+++|+.|+++.|.+..+
T Consensus 189 ----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 237 (353)
T 2z80_A 189 ----YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF 237 (353)
T ss_dssp ----ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTC
T ss_pred ----cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccc
Confidence 23567888999999999999877666544 358999999999886554
No 60
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=1.7e-18 Score=196.91 Aligned_cols=148 Identities=9% Similarity=0.022 Sum_probs=80.3
Q ss_pred CccceeEEEeccccCccccccccCccccCCCcEEeecc---CCCceeeecCCCC-cccccccccchhhhccccc-ccccc
Q 048566 560 GINNVECLWLDKLQGIGDVLFNLDTEGFSQLKLLWVQN---NPDIFCIVDSREM-VACDAFPLLESLILHNLIN-MERVC 634 (760)
Q Consensus 560 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~---~~~l~~i~~~~~~-~~~~~~p~L~~L~l~~~~~-l~~~~ 634 (760)
++++|+.|.+ .+..+...........+++|+.|++++ |+.++..+..... .....+++|++|+++.|.+ +....
T Consensus 376 ~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~ 454 (592)
T 3ogk_B 376 GCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG 454 (592)
T ss_dssp HCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred hCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence 3566777766 332222211111112367788887764 3344322100000 0123477888888876654 22211
Q ss_pred cccccccccCCccEEEEecCCCCCcccchhhhhccCCCcEEEEecCCcchhhhccccccccccccccccccCeeecCCCc
Q 048566 635 IDRLKVESFNQLKNIEAYNCDKLSNIFWLSTTKCLPRLERIAVVNCSKMKEIFAIGEEVDNAIEKIEFAQLRSLSLGNLP 714 (760)
Q Consensus 635 ~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 714 (760)
... -...+++|+.|++.+|. +++......+..+++|++|++++|+ ++..... .....+++|++|+|++|+
T Consensus 455 ~~~-~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~-------~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 455 LSY-IGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIA-------AAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHH-HHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHH-------HHHHHCSSCCEEEEESCB
T ss_pred HHH-HHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHH-------HHHHhcCccCeeECcCCc
Confidence 111 11247888999988764 5543223355778899999999997 4332110 123467899999999997
Q ss_pred ccccc
Q 048566 715 EVTSF 719 (760)
Q Consensus 715 ~L~~~ 719 (760)
++..
T Consensus 525 -it~~ 528 (592)
T 3ogk_B 525 -ASMT 528 (592)
T ss_dssp -CCTT
T ss_pred -CCHH
Confidence 6544
No 61
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.71 E-value=1.9e-18 Score=196.60 Aligned_cols=143 Identities=8% Similarity=0.023 Sum_probs=79.0
Q ss_pred CccceeEEEeccccCccccccccCccccCCCcEEeec-----cCCCceeeecCCCCc-ccccccccchhhhccccccccc
Q 048566 560 GINNVECLWLDKLQGIGDVLFNLDTEGFSQLKLLWVQ-----NNPDIFCIVDSREMV-ACDAFPLLESLILHNLINMERV 633 (760)
Q Consensus 560 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~-----~~~~l~~i~~~~~~~-~~~~~p~L~~L~l~~~~~l~~~ 633 (760)
++++|+.|. ..+..............+++|+.|++. +|..++..+...... ....+++|++|++++ ++...
T Consensus 370 ~~~~L~~L~-~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~ 446 (594)
T 2p1m_B 370 GCPKLESVL-YFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDK 446 (594)
T ss_dssp HCTTCCEEE-EEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHH
T ss_pred hchhHHHHH-HhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHH
Confidence 356777773 333333321111111247888888888 555554321100000 134567888888865 33332
Q ss_pred ccccccccccCCccEEEEecCCCCCcccchhhhhccCCCcEEEEecCCcchhhhccccccccccccccccccCeeecCCC
Q 048566 634 CIDRLKVESFNQLKNIEAYNCDKLSNIFWLSTTKCLPRLERIAVVNCSKMKEIFAIGEEVDNAIEKIEFAQLRSLSLGNL 713 (760)
Q Consensus 634 ~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c 713 (760)
....+ ...+++|+.|++.+|. +++.........+++|++|++++|+. +..... .....+++|+.|++++|
T Consensus 447 ~~~~l-~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~-------~~~~~l~~L~~L~l~~~ 516 (594)
T 2p1m_B 447 VFEYI-GTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALL-------ANASKLETMRSLWMSSC 516 (594)
T ss_dssp HHHHH-HHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHH-------HTGGGGGGSSEEEEESS
T ss_pred HHHHH-HHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHH-------HHHHhCCCCCEEeeeCC
Confidence 21111 1137889999998875 44332222336689999999999975 322110 12345788999999999
Q ss_pred cc
Q 048566 714 PE 715 (760)
Q Consensus 714 ~~ 715 (760)
+.
T Consensus 517 ~~ 518 (594)
T 2p1m_B 517 SV 518 (594)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.70 E-value=1.8e-16 Score=172.70 Aligned_cols=190 Identities=22% Similarity=0.314 Sum_probs=132.7
Q ss_pred EEEeecCCCCCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCCh-hhhhhhccCCeeEecCC
Q 048566 306 AITLRYDSNRHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFP-SSIDLLVNLHTLCLDQS 384 (760)
Q Consensus 306 ~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~ 384 (760)
.+.........+|.... ++++.|+++ .+.+. .++...|.++++|++|++++|.+..++ ..+..+++|++|++++|
T Consensus 47 ~v~c~~~~l~~iP~~~~-~~l~~L~L~--~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 47 KVICVRKNLREVPDGIS-TNTRLLNLH--ENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp EEECCSCCCSSCCSCCC-TTCSEEECC--SCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred EEEeCCCCcCcCCCCCC-CCCcEEEcc--CCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 33333334455565433 678888887 44554 355556688888888888888887664 66788888888888888
Q ss_pred CCCC-c-cccccccccceeecccCcccccch-hhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhh
Q 048566 385 ALGD-I-AIIGKLKNLEVLSFLMSDIMQLPE-ELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVE 461 (760)
Q Consensus 385 ~l~~-~-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~ 461 (760)
.+.. + ..+..+.+|++|++++|.+..+|. .+.++++|++|++++|..+..++...+.++++|++|++++|.+.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~---- 198 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR---- 198 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS----
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc----
Confidence 8776 3 357888888888888888887764 57788888888888877777777777788888888888888664
Q ss_pred hccccccCCChhhhcCCCCCCEEEEEeccCCCCCcch--hccccceeEEEecC
Q 048566 462 RANSKRSNASLDELMHLPRLTTLEIDVKNDSILPEGF--LARKLERFKISIGN 512 (760)
Q Consensus 462 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~ 512 (760)
.+..+..+++|+.|++++|....++... .+++|+.|+++.|.
T Consensus 199 ---------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 242 (440)
T 3zyj_A 199 ---------EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242 (440)
T ss_dssp ---------SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred ---------cccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc
Confidence 1224667777888888777655443222 34666666665554
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.70 E-value=1.8e-16 Score=173.43 Aligned_cols=185 Identities=22% Similarity=0.273 Sum_probs=127.3
Q ss_pred cCCCCCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCC-hhhhhhhccCCeeEecCCCCCC-
Q 048566 311 YDSNRHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSF-PSSIDLLVNLHTLCLDQSALGD- 388 (760)
Q Consensus 311 ~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~- 388 (760)
......+|.... ++++.|+++ ++.+. .++...|.++++|++|++++|.+..+ |..+..+++|++|++++|.+..
T Consensus 63 ~~~l~~iP~~~~-~~l~~L~L~--~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 138 (452)
T 3zyi_A 63 RRGLSEVPQGIP-SNTRYLNLM--ENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI 138 (452)
T ss_dssp SSCCSSCCSCCC-TTCSEEECC--SSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC
T ss_pred CCCcCccCCCCC-CCccEEECc--CCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc
Confidence 333345554332 577888887 45554 35455567888888888888887765 3667778888888888888766
Q ss_pred c-cccccccccceeecccCcccccch-hhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhcccc
Q 048566 389 I-AIIGKLKNLEVLSFLMSDIMQLPE-ELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSK 466 (760)
Q Consensus 389 ~-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 466 (760)
+ ..++++++|++|++++|.+..+|. .+.++++|++|++++|..+..++...+.++++|++|++++|.+..
T Consensus 139 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-------- 210 (452)
T 3zyi_A 139 PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-------- 210 (452)
T ss_dssp CTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS--------
T ss_pred ChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc--------
Confidence 3 347778888888888888877764 567788888888888777777777667788888888888876641
Q ss_pred ccCCChhhhcCCCCCCEEEEEeccCCCCCcch--hccccceeEEEecC
Q 048566 467 RSNASLDELMHLPRLTTLEIDVKNDSILPEGF--LARKLERFKISIGN 512 (760)
Q Consensus 467 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~ 512 (760)
+..+..+++|+.|+++++....++... .+++|+.|+++.|.
T Consensus 211 -----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 253 (452)
T 3zyi_A 211 -----MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253 (452)
T ss_dssp -----CCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC
T ss_pred -----cccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc
Confidence 224667777777777777655543322 33666666665554
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.70 E-value=1.3e-16 Score=174.37 Aligned_cols=172 Identities=18% Similarity=0.205 Sum_probs=141.8
Q ss_pred ccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCC-hhhhhhhccCCeeEecCCCCCC--ccccccccccceee
Q 048566 326 LEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSF-PSSIDLLVNLHTLCLDQSALGD--IAIIGKLKNLEVLS 402 (760)
Q Consensus 326 Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~ 402 (760)
.+.++.. ...+. .+|..+ .++|++|++++|.+..+ |..++++++|++|++++|.+.. +..+.++.+|++|+
T Consensus 56 ~~~v~c~--~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 129 (452)
T 3zyi_A 56 FSKVVCT--RRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE 129 (452)
T ss_dssp SCEEECC--SSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CcEEEEC--CCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEE
Confidence 3455544 34444 477654 36899999999999976 6789999999999999999887 46799999999999
Q ss_pred cccCcccccchh-hhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCC
Q 048566 403 FLMSDIMQLPEE-LGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRL 481 (760)
Q Consensus 403 l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 481 (760)
+++|.+..+|.. +..+++|++|++++| .+..++...+.++++|++|++++|.....++ ...+..+++|
T Consensus 130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~----------~~~~~~l~~L 198 (452)
T 3zyi_A 130 LFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYIS----------EGAFEGLFNL 198 (452)
T ss_dssp CCSSCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEEC----------TTTTTTCTTC
T ss_pred CCCCcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccC----------hhhccCCCCC
Confidence 999999998865 788999999999998 7888888889999999999999976653332 3457889999
Q ss_pred CEEEEEeccCCCCCcchhccccceeEEEecCCC
Q 048566 482 TTLEIDVKNDSILPEGFLARKLERFKISIGNES 514 (760)
Q Consensus 482 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 514 (760)
+.|+++++....++....+.+|+.|+++.|.+.
T Consensus 199 ~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 199 KYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CEEECTTSCCSSCCCCTTCTTCCEEECTTSCCS
T ss_pred CEEECCCCcccccccccccccccEEECcCCcCc
Confidence 999999999888887777788888888877643
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.70 E-value=1.5e-16 Score=173.30 Aligned_cols=173 Identities=21% Similarity=0.245 Sum_probs=143.0
Q ss_pred ccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCCh-hhhhhhccCCeeEecCCCCCC--ccccccccccceee
Q 048566 326 LEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFP-SSIDLLVNLHTLCLDQSALGD--IAIIGKLKNLEVLS 402 (760)
Q Consensus 326 Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~ 402 (760)
.+.++.. ...+. .+|..+. +++++|++++|.+..++ ..+.++++|++|++++|.+.. +..+.++.+|++|+
T Consensus 45 ~~~v~c~--~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 45 FSKVICV--RKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118 (440)
T ss_dssp SCEEECC--SCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEE
T ss_pred CCEEEeC--CCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEE
Confidence 4455554 44454 5777553 68999999999999764 789999999999999999887 46799999999999
Q ss_pred cccCcccccch-hhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCC
Q 048566 403 FLMSDIMQLPE-ELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRL 481 (760)
Q Consensus 403 l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 481 (760)
+++|++..+|. .+..+++|++|++++| .+..++...+.++++|++|++++|.....+ ....+..+++|
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i----------~~~~~~~l~~L 187 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYI----------SEGAFEGLSNL 187 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEE----------CTTTTTTCSSC
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCccee----------Ccchhhccccc
Confidence 99999999986 5889999999999998 788888888999999999999987655333 23467889999
Q ss_pred CEEEEEeccCCCCCcchhccccceeEEEecCCCC
Q 048566 482 TTLEIDVKNDSILPEGFLARKLERFKISIGNESF 515 (760)
Q Consensus 482 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 515 (760)
+.|+++++....+|....+++|+.|+++.|.+..
T Consensus 188 ~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 188 RYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCE
T ss_pred CeecCCCCcCccccccCCCcccCEEECCCCccCc
Confidence 9999999998888877777889999988776443
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=1.1e-16 Score=163.65 Aligned_cols=196 Identities=24% Similarity=0.331 Sum_probs=92.2
Q ss_pred cccceEEEeecCCCCCCCC--CCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCC-CCCC-hhhhhhhccC
Q 048566 301 LRKCKAITLRYDSNRHFPE--GLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQ-FSSF-PSSIDLLVNL 376 (760)
Q Consensus 301 ~~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~l-p~~i~~l~~L 376 (760)
++.++++.+.++....++. ..++++|++|+++ .+.+. .++...|.++++|++|++++|. +..+ |..+..+++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~--~n~l~-~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L 107 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLH--SNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL 107 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECC--SSCCC-EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECC--CCccc-eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCC
Confidence 3445555555333333332 2245555555555 22332 2322334555555555555554 4444 4445555555
Q ss_pred CeeEecCCCCCC--ccccccccccceeecccCcccccchh-hhcCCCCCEEeccccccccccCcccccCCCCCCEEEccc
Q 048566 377 HTLCLDQSALGD--IAIIGKLKNLEVLSFLMSDIMQLPEE-LGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGN 453 (760)
Q Consensus 377 ~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~ 453 (760)
++|++++|.+.. +..+.++++|++|++++|.+..+|.. ++++++|++|++++| .+..+++..+..+++|++|++++
T Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCC
Confidence 555555555444 23345555555555555555544432 445555555555554 44444444445555555555555
Q ss_pred cccchhhhhccccccCCChhhhcCCCCCCEEEEEeccCCCCCcch--hccccceeEEEec
Q 048566 454 CFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDSILPEGF--LARKLERFKISIG 511 (760)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~ 511 (760)
|.+.. ..+..+..+++|+.|+++++....++... .+++|+.|+++.|
T Consensus 187 n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 187 NRVAH-----------VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp SCCCE-----------ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred Ccccc-----------cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence 54431 11234444555555555555444444321 2244444444444
No 67
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=5.2e-16 Score=160.09 Aligned_cols=194 Identities=18% Similarity=0.226 Sum_probs=162.5
Q ss_pred ccccceEEEeecCCCCCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCee
Q 048566 300 ALRKCKAITLRYDSNRHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTL 379 (760)
Q Consensus 300 ~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L 379 (760)
..++++.+.+.+.....++....+++|+.|+++ ++.+. .++. +..+++|++|++++|.+..++ .+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~--~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELK--DNQIT-DLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECC--SSCCC-CCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEcc--CCcCC-CChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEE
Confidence 356788999886555777777789999999998 45554 3554 689999999999999999886 68899999999
Q ss_pred EecCCCCCCccccccccccceeecccCcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchh
Q 048566 380 CLDQSALGDIAIIGKLKNLEVLSFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWE 459 (760)
Q Consensus 380 ~l~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~ 459 (760)
++++|.+..++.++.+++|++|++++|.+..++. ++.+++|++|++++| .+..+++ +..+++|++|++++|.+..
T Consensus 113 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~- 187 (308)
T 1h6u_A 113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKADDNKISD- 187 (308)
T ss_dssp ECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCC-
T ss_pred ECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh--hcCCCCCCEEECCCCccCc-
Confidence 9999999887679999999999999999998876 889999999999998 6777776 8899999999999997751
Q ss_pred hhhccccccCCChhhhcCCCCCCEEEEEeccCCCCCcchhccccceeEEEecCCCCC
Q 048566 460 VERANSKRSNASLDELMHLPRLTTLEIDVKNDSILPEGFLARKLERFKISIGNESFM 516 (760)
Q Consensus 460 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l 516 (760)
+..+..+++|+.|+++++.....+....+++|+.|+++.|.+...
T Consensus 188 ------------~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 188 ------------ISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp ------------CGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEECC
T ss_pred ------------ChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeecC
Confidence 223788999999999999888777666778999999998885544
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.68 E-value=1.8e-17 Score=172.08 Aligned_cols=245 Identities=15% Similarity=0.082 Sum_probs=172.8
Q ss_pred CCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCCcccccccccccee
Q 048566 322 ECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGDIAIIGKLKNLEVL 401 (760)
Q Consensus 322 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L 401 (760)
.+++|+.|+++ ++.+. .++...|..+++|++|++++|.+...+. +..+++|++|++++|.+..+ ...++|++|
T Consensus 32 ~~~~L~~L~L~--~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l---~~~~~L~~L 104 (317)
T 3o53_A 32 SAWNVKELDLS--GNPLS-QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL---LVGPSIETL 104 (317)
T ss_dssp TGGGCSEEECT--TSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEE---EECTTCCEE
T ss_pred cCCCCCEEECc--CCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccc---cCCCCcCEE
Confidence 45688999998 45555 3666667899999999999999886665 88899999999999987653 244889999
Q ss_pred ecccCcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhh-cCCCC
Q 048566 402 SFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDEL-MHLPR 480 (760)
Q Consensus 402 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~ 480 (760)
++++|.+..++. ..+++|++|++++| .+..+++..++.+++|++|++++|.+.... +..+ ..+++
T Consensus 105 ~l~~n~l~~~~~--~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----------~~~~~~~l~~ 170 (317)
T 3o53_A 105 HAANNNISRVSC--SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVN-----------FAELAASSDT 170 (317)
T ss_dssp ECCSSCCSEEEE--CCCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEEE-----------GGGGGGGTTT
T ss_pred ECCCCccCCcCc--cccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCccc-----------HHHHhhccCc
Confidence 999999988774 34788999999998 788887766888999999999998775221 3344 46889
Q ss_pred CCEEEEEeccCCCCCcchhccccceeEEEecCCCCCCCccccccccCCCCcccccccccccceeeeccCccccccccccC
Q 048566 481 LTTLEIDVKNDSILPEGFLARKLERFKISIGNESFMPPKCVRQDWFQSQPHFSINSDRKSLRALKLKLDFMDICSMKLQG 560 (760)
Q Consensus 481 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~l~~l~~~~ 560 (760)
|+.|+++++....++....+++|+.|+++.|.+..+|.. +..
T Consensus 171 L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~--------------------------------------~~~ 212 (317)
T 3o53_A 171 LEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE--------------------------------------FQS 212 (317)
T ss_dssp CCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGG--------------------------------------GGG
T ss_pred CCEEECCCCcCcccccccccccCCEEECCCCcCCcchhh--------------------------------------hcc
Confidence 999999988877776666678888888887764433210 222
Q ss_pred ccceeEEEeccccCccccccccCccccCCCcEEeeccCCCc-eeeecCCCCcccccccccchhhhccccccccc
Q 048566 561 INNVECLWLDKLQGIGDVLFNLDTEGFSQLKLLWVQNNPDI-FCIVDSREMVACDAFPLLESLILHNLINMERV 633 (760)
Q Consensus 561 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l-~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~ 633 (760)
+++|+.|.+.++.- ..... ....+++|+.|++++++-. ..+ ......+++|+.|.+.++..++..
T Consensus 213 l~~L~~L~L~~N~l-~~l~~--~~~~l~~L~~L~l~~N~~~~~~~-----~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 213 AAGVTWISLRNNKL-VLIEK--ALRFSQNLEHFDLRGNGFHCGTL-----RDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp GTTCSEEECTTSCC-CEECT--TCCCCTTCCEEECTTCCCBHHHH-----HHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred cCcccEEECcCCcc-cchhh--HhhcCCCCCEEEccCCCccCcCH-----HHHHhccccceEEECCCchhccCC
Confidence 34455555544422 11211 1345788888888877532 111 113345777888888776666544
No 69
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.68 E-value=1.8e-17 Score=188.32 Aligned_cols=119 Identities=15% Similarity=0.070 Sum_probs=73.8
Q ss_pred CccceeEEEecccc---Cccccccc----cCccccCCCcEEeeccCCC-ceeeecCCCCcccccccccchhhhccccccc
Q 048566 560 GINNVECLWLDKLQ---GIGDVLFN----LDTEGFSQLKLLWVQNNPD-IFCIVDSREMVACDAFPLLESLILHNLINME 631 (760)
Q Consensus 560 ~l~~L~~L~l~~~~---~~~~~~~~----~~~~~l~~L~~L~l~~~~~-l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~ 631 (760)
.+++|+.|.+..+. .++..+.. ....++++|+.|+++.|.+ +. +.........+|+|+.|+++++. +.
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~---~~~~~~~~~~~~~L~~L~L~~n~-l~ 476 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLT---DLGLSYIGQYSPNVRWMLLGYVG-ES 476 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCC---HHHHHHHHHSCTTCCEEEECSCC-SS
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCcc---HHHHHHHHHhCccceEeeccCCC-CC
Confidence 36789999987543 22221000 0134589999999987753 11 10000011347899999999775 33
Q ss_pred ccccccccccccCCccEEEEecCCCCCcccchhhhhccCCCcEEEEecCCcchh
Q 048566 632 RVCIDRLKVESFNQLKNIEAYNCDKLSNIFWLSTTKCLPRLERIAVVNCSKMKE 685 (760)
Q Consensus 632 ~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~ 685 (760)
...... ....+++|+.|++++|+ +++-........+++|++|++++|. ++.
T Consensus 477 ~~~~~~-~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 477 DEGLME-FSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp HHHHHH-HHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred HHHHHH-HHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 221111 13468999999999998 6543333356789999999999996 443
No 70
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.67 E-value=7.5e-16 Score=157.35 Aligned_cols=216 Identities=17% Similarity=0.201 Sum_probs=170.5
Q ss_pred EEEeecCCCCCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCC-hhhhhhhccCCeeEecCC
Q 048566 306 AITLRYDSNRHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSF-PSSIDLLVNLHTLCLDQS 384 (760)
Q Consensus 306 ~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~ 384 (760)
.+.........+|... .++++.|+++ ++.+. .++...|..+++|++|+++++.+..+ |..+..+++|++|++++|
T Consensus 15 ~~~c~~~~l~~ip~~~-~~~l~~L~l~--~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGI-PAASQRIFLH--GNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp EEECCSSCCSSCCTTC-CTTCSEEECT--TSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred EEEcCcCCcccCCcCC-CCCceEEEee--CCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 3444434445566533 5799999999 55565 46767789999999999999999877 788999999999999999
Q ss_pred C-CCC--ccccccccccceeecccCccccc-chhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhh
Q 048566 385 A-LGD--IAIIGKLKNLEVLSFLMSDIMQL-PEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEV 460 (760)
Q Consensus 385 ~-l~~--~~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~ 460 (760)
. +.. +..+..+++|++|++++|.+..+ |..+.++++|++|++++| .+..+++..++++++|++|++++|.+..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~-- 167 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISS-- 167 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCE--
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCcccc--
Confidence 7 776 46789999999999999999987 466889999999999998 7888888778999999999999997651
Q ss_pred hhccccccCCChhhhcCCCCCCEEEEEeccCCCCCc-c-hhccccceeEEEecCCCCCCCccccccccCCCCcccccccc
Q 048566 461 ERANSKRSNASLDELMHLPRLTTLEIDVKNDSILPE-G-FLARKLERFKISIGNESFMPPKCVRQDWFQSQPHFSINSDR 538 (760)
Q Consensus 461 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~-~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 538 (760)
.....+..+++|+.|+++++....... . ..+++|+.|+++.|.+..++... ....
T Consensus 168 ---------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------------~~~l 224 (285)
T 1ozn_A 168 ---------VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA--------------LAPL 224 (285)
T ss_dssp ---------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHH--------------HTTC
T ss_pred ---------cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHH--------------cccC
Confidence 123457889999999999988765532 2 24589999999999876654211 1345
Q ss_pred cccceeeeccCcc
Q 048566 539 KSLRALKLKLDFM 551 (760)
Q Consensus 539 ~~l~~l~l~~~~~ 551 (760)
++++.+.+..++.
T Consensus 225 ~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 225 RALQYLRLNDNPW 237 (285)
T ss_dssp TTCCEEECCSSCE
T ss_pred cccCEEeccCCCc
Confidence 6788888887764
No 71
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.66 E-value=5.2e-16 Score=160.37 Aligned_cols=144 Identities=19% Similarity=0.233 Sum_probs=100.5
Q ss_pred EEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhh-hhhhccCCeeEecCCCCCC----ccccccccccceee
Q 048566 328 FLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSS-IDLLVNLHTLCLDQSALGD----IAIIGKLKNLEVLS 402 (760)
Q Consensus 328 ~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~l~~----~~~~~~l~~L~~L~ 402 (760)
.+++. ...+. .+|..+ .++|++|+++++.+..+|.. +.++++|++|++++|.+.. +..+..+.+|++|+
T Consensus 11 ~l~c~--~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 11 EIRCN--SKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp EEECC--SSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred EEEcC--CCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 44444 33343 466544 25788888888888887764 5788888888888888764 34566778888888
Q ss_pred cccCcccccchhhhcCCCCCEEeccccccccccCc-ccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCC
Q 048566 403 FLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAP-NLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRL 481 (760)
Q Consensus 403 l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 481 (760)
+++|.+..+|..+..+++|++|++++| .+..++. ..+.++++|++|++++|.+.. ..+..+..+++|
T Consensus 85 Ls~n~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L 152 (306)
T 2z66_A 85 LSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRV-----------AFNGIFNGLSSL 152 (306)
T ss_dssp CCSCSEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEE-----------CSTTTTTTCTTC
T ss_pred CCCCccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCc-----------cchhhcccCcCC
Confidence 888888888877888888888888887 5666654 447778888888888776542 123445666667
Q ss_pred CEEEEEec
Q 048566 482 TTLEIDVK 489 (760)
Q Consensus 482 ~~L~l~~~ 489 (760)
+.|+++++
T Consensus 153 ~~L~l~~n 160 (306)
T 2z66_A 153 EVLKMAGN 160 (306)
T ss_dssp CEEECTTC
T ss_pred CEEECCCC
Confidence 66666544
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.64 E-value=3.1e-15 Score=151.29 Aligned_cols=194 Identities=23% Similarity=0.336 Sum_probs=150.6
Q ss_pred cceEEEeecCCCCCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhh-hhhhccCCeeEe
Q 048566 303 KCKAITLRYDSNRHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSS-IDLLVNLHTLCL 381 (760)
Q Consensus 303 ~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~l 381 (760)
..+.+...++....+|.... ++++.|+++ ++.+. .++...|.++++|++|+++++.+..+|.. +..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~--~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQ--SNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECC--SSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECc--CCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 34556666555566665443 678999998 45554 46666778999999999999999888765 478899999999
Q ss_pred cCCCCCC-c-cccccccccceeecccCcccccch-hhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccch
Q 048566 382 DQSALGD-I-AIIGKLKNLEVLSFLMSDIMQLPE-ELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEW 458 (760)
Q Consensus 382 ~~~~l~~-~-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~ 458 (760)
++|.+.. + ..+.++.+|++|++++|.+..+|. .++.+++|++|++++| .+..+++..++.+++|++|++++|.+..
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCcE
Confidence 9999877 3 457889999999999998888765 4688999999999998 7888888778889999999999887641
Q ss_pred hhhhccccccCCChhhhcCCCCCCEEEEEeccCCCCCcch--hccccceeEEEecC
Q 048566 459 EVERANSKRSNASLDELMHLPRLTTLEIDVKNDSILPEGF--LARKLERFKISIGN 512 (760)
Q Consensus 459 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~ 512 (760)
.....+..+++|+.|+++++....++... .+++|+.|+++.|.
T Consensus 172 -----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 172 -----------VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp -----------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -----------eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 22345778889999999988877777643 35788888887776
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=8.7e-16 Score=158.91 Aligned_cols=182 Identities=15% Similarity=0.203 Sum_probs=144.8
Q ss_pred CCCCccEEEeeccCCcccccCCchhh-cCCCCceEEEecCCCCCCChhhhhhh-----ccCCeeEecCCCCCC-c-cccc
Q 048566 322 ECPNLEFLCISLKDSSLEINIPGNFF-IGMKKLRVLDFTRMQFSSFPSSIDLL-----VNLHTLCLDQSALGD-I-AIIG 393 (760)
Q Consensus 322 ~~~~Lr~L~l~~~~~~~~~~~~~~~~-~~l~~Lr~L~l~~~~~~~lp~~i~~l-----~~L~~L~l~~~~l~~-~-~~~~ 393 (760)
++++|++|+++ ++.+.+.+|..+| ..+++|++|++++|.+..+|..++.+ ++|++|++++|.+.. + ..++
T Consensus 93 ~l~~L~~L~L~--~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLE--NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEE--EEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred CcCCccEEEcc--CCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 57889999999 4556556777664 88999999999999999888888888 899999999999877 3 6789
Q ss_pred cccccceeecccCcccc---cchhh--hcCCCCCEEeccccccccc---cCcccccCCCCCCEEEccccccchhhhhccc
Q 048566 394 KLKNLEVLSFLMSDIMQ---LPEEL--GQLNKLRLLDLTNCFHLKV---IAPNLISSLTRLEELYMGNCFIEWEVERANS 465 (760)
Q Consensus 394 ~l~~L~~L~l~~~~i~~---lp~~~--~~l~~L~~L~l~~~~~l~~---~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 465 (760)
++++|++|++++|.+.. +|..+ +.+++|++|++++| .+.. ++...+.++++|++|++++|.+....
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----- 244 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAA----- 244 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC-----
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCccc-----
Confidence 99999999999998653 35555 88999999999998 5663 33344567899999999999875221
Q ss_pred cccCCChhhhcCCCCCCEEEEEeccCCCCCcchhccccceeEEEecCCCCCC
Q 048566 466 KRSNASLDELMHLPRLTTLEIDVKNDSILPEGFLARKLERFKISIGNESFMP 517 (760)
Q Consensus 466 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~ 517 (760)
....+..+++|+.|+++++....+|.... ++|+.|+++.|.+..+|
T Consensus 245 -----~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l~~~p 290 (312)
T 1wwl_A 245 -----GAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYNRLDRNP 290 (312)
T ss_dssp -----CCSCCCCCTTCCEEECTTSCCSSCCSSCC-SEEEEEECCSSCCCSCC
T ss_pred -----chhhhhhcCCCCEEECCCCccChhhhhcc-CCceEEECCCCCCCCCh
Confidence 12345567899999999998888887766 88999999988866553
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.63 E-value=2.5e-15 Score=153.38 Aligned_cols=193 Identities=22% Similarity=0.267 Sum_probs=100.3
Q ss_pred cceEEEeecCCCCCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeEec
Q 048566 303 KCKAITLRYDSNRHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLD 382 (760)
Q Consensus 303 ~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 382 (760)
.++.+.+..+....+|.... +.++.|+++ ++.+. .++...|..+++|++|++++|.+..++.. +.+++|++|+++
T Consensus 11 ~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~--~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 11 SHLEVNCDKRNLTALPPDLP-KDTTILHLS--ENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLS 85 (290)
T ss_dssp TCCEEECTTSCCSSCCSCCC-TTCCEEECT--TSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECC
T ss_pred CccEEECCCCCCCcCCCCCC-CCCCEEEcC--CCcCC-ccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECC
Confidence 34444444333344444332 455566555 33333 23333445566666666666665555433 455566666666
Q ss_pred CCCCCC-ccccccccccceeecccCcccccc-hhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhh
Q 048566 383 QSALGD-IAIIGKLKNLEVLSFLMSDIMQLP-EELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEV 460 (760)
Q Consensus 383 ~~~l~~-~~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~ 460 (760)
+|.+.. |..+..+++|++|++++|++..+| ..+.++++|++|++++| .+..+++..+..+++|++|++++|.+..
T Consensus 86 ~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~-- 162 (290)
T 1p9a_G 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTE-- 162 (290)
T ss_dssp SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSC--
T ss_pred CCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCCc--
Confidence 666555 344555566666666666655554 33555666666666655 4555555545556666666666555431
Q ss_pred hhccccccCCChhhhcCCCCCCEEEEEeccCCCCCcchh-ccccceeEEEecC
Q 048566 461 ERANSKRSNASLDELMHLPRLTTLEIDVKNDSILPEGFL-ARKLERFKISIGN 512 (760)
Q Consensus 461 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~ 512 (760)
.....+..+++|+.|+++++....+|...+ ..+|+.+.+..|.
T Consensus 163 ---------l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 163 ---------LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp ---------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred ---------cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 112234455566666666555555554432 2445555555443
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.63 E-value=2.5e-15 Score=153.26 Aligned_cols=180 Identities=20% Similarity=0.272 Sum_probs=154.1
Q ss_pred CCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCC-hhhhhhhccCCeeEecCCCCCCccccccccccc
Q 048566 321 LECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSF-PSSIDLLVNLHTLCLDQSALGDIAIIGKLKNLE 399 (760)
Q Consensus 321 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~ 399 (760)
.++++++.+++. .+.+. .+|..++ +++++|++++|.+..+ |..+..+++|++|++++|.+..++..+.+++|+
T Consensus 7 ~~l~~l~~l~~~--~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~ 80 (290)
T 1p9a_G 7 SKVASHLEVNCD--KRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLG 80 (290)
T ss_dssp ECSTTCCEEECT--TSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCC
T ss_pred cccCCccEEECC--CCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCC
Confidence 367889999998 45555 5777653 6899999999999977 578999999999999999998865568999999
Q ss_pred eeecccCcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCC
Q 048566 400 VLSFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLP 479 (760)
Q Consensus 400 ~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 479 (760)
+|++++|.+..+|..+..+++|++|++++| .+..+++..+.++++|++|++++|.+.. .....+..++
T Consensus 81 ~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~-----------~~~~~~~~l~ 148 (290)
T 1p9a_G 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKT-----------LPPGLLTPTP 148 (290)
T ss_dssp EEECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCC-----------CCTTTTTTCT
T ss_pred EEECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCc-----------cChhhccccc
Confidence 999999999999999999999999999998 7899988889999999999999998751 2234577899
Q ss_pred CCCEEEEEeccCCCCCcch--hccccceeEEEecCCCCCCC
Q 048566 480 RLTTLEIDVKNDSILPEGF--LARKLERFKISIGNESFMPP 518 (760)
Q Consensus 480 ~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~l~~ 518 (760)
+|+.|+++++....++... .+++|+.|+++.|.+..+|.
T Consensus 149 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~ 189 (290)
T 1p9a_G 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 189 (290)
T ss_dssp TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccCh
Confidence 9999999999988888765 46899999999998776653
No 76
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.63 E-value=1.4e-17 Score=183.03 Aligned_cols=361 Identities=15% Similarity=0.070 Sum_probs=170.8
Q ss_pred CCCCccEEEeeccCCcccc----cCCchhhcCCCCceEEEecCCCCCCC-hhhhh-hhc----cCCeeEecCCCCCC---
Q 048566 322 ECPNLEFLCISLKDSSLEI----NIPGNFFIGMKKLRVLDFTRMQFSSF-PSSID-LLV----NLHTLCLDQSALGD--- 388 (760)
Q Consensus 322 ~~~~Lr~L~l~~~~~~~~~----~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~-~l~----~L~~L~l~~~~l~~--- 388 (760)
.+++|++|+++++ .+.. .++ ..+..+++|++|++++|.+... +..+. .+. +|++|++++|.+..
T Consensus 26 ~~~~L~~L~L~~~--~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 26 LLQQCQVVRLDDC--GLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp HHTTCSEEEEESS--CCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred hcCCccEEEccCC--CCCHHHHHHHH-HHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 4556666666632 2221 111 2345556666666666655421 22222 233 46666666666542
Q ss_pred ---ccccccccccceeecccCccccc-chhhh-----cCCCCCEEeccccccccccC----cccccCCCCCCEEEccccc
Q 048566 389 ---IAIIGKLKNLEVLSFLMSDIMQL-PEELG-----QLNKLRLLDLTNCFHLKVIA----PNLISSLTRLEELYMGNCF 455 (760)
Q Consensus 389 ---~~~~~~l~~L~~L~l~~~~i~~l-p~~~~-----~l~~L~~L~l~~~~~l~~~~----~~~i~~l~~L~~L~l~~~~ 455 (760)
+..+.++++|++|++++|.+... +..+. ..++|++|++++| .+.... +..+..+++|++|++++|.
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 34455566666666666655421 11111 1345666666665 333321 1224445666666666665
Q ss_pred cchhhhhccccccCCChhhhc-CCCCCCEEEEEeccCCCC-----Ccc-hhccccceeEEEecCCCCCCCccccccccCC
Q 048566 456 IEWEVERANSKRSNASLDELM-HLPRLTTLEIDVKNDSIL-----PEG-FLARKLERFKISIGNESFMPPKCVRQDWFQS 528 (760)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~-----~~~-~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~ 528 (760)
+..... ......+. ..++|+.|+++++..... +.. ...++|+.|+++.|.+.....
T Consensus 182 i~~~~~-------~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~---------- 244 (461)
T 1z7x_W 182 INEAGV-------RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM---------- 244 (461)
T ss_dssp CHHHHH-------HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH----------
T ss_pred cchHHH-------HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH----------
Confidence 432110 00011111 244566666665544331 111 123556666665554211000
Q ss_pred CCccc--ccccccccceeeeccCcccccc---c--cccCccceeEEEeccccCccccccccC---ccccCCCcEEeeccC
Q 048566 529 QPHFS--INSDRKSLRALKLKLDFMDICS---M--KLQGINNVECLWLDKLQGIGDVLFNLD---TEGFSQLKLLWVQNN 598 (760)
Q Consensus 529 ~~~~~--~~~~~~~l~~l~l~~~~~~l~~---l--~~~~l~~L~~L~l~~~~~~~~~~~~~~---~~~l~~L~~L~l~~~ 598 (760)
..+. ......+++.|.+..+...-.. + .+..+++|+.|.+..+.-.......+. ....++|++|++++|
T Consensus 245 -~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 245 -AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp -HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred -HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 0000 0012345555555544321100 1 133357788888876642111111110 012369999999988
Q ss_pred CCceeeecCCCCcccccccccchhhhccccccccccccccc---ccccCCccEEEEecCCCCC-----cccchhhhhccC
Q 048566 599 PDIFCIVDSREMVACDAFPLLESLILHNLINMERVCIDRLK---VESFNQLKNIEAYNCDKLS-----NIFWLSTTKCLP 670 (760)
Q Consensus 599 ~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~---~~~~~~L~~L~l~~C~~L~-----~l~~~~~~~~l~ 670 (760)
. +..............+++|++|+++++ .+.......+. ....++|+.|++.+| .++ .++ ..+..++
T Consensus 324 ~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~--~~l~~~~ 398 (461)
T 1z7x_W 324 S-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLA--ATLLANH 398 (461)
T ss_dssp C-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHH--HHHHHCC
T ss_pred C-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHH--HHHHhCC
Confidence 5 221100000012234689999999887 34432211110 012679999999998 455 333 3567899
Q ss_pred CCcEEEEecCCcchhhhcccccccccccc-ccccccCeeecCCCc
Q 048566 671 RLERIAVVNCSKMKEIFAIGEEVDNAIEK-IEFAQLRSLSLGNLP 714 (760)
Q Consensus 671 ~L~~L~l~~c~~L~~l~~~~~~~~~~~~~-~~l~~L~~L~l~~c~ 714 (760)
+|++|++++|+ +...... .....+ ...++|+.|.+.++.
T Consensus 399 ~L~~L~l~~N~-i~~~~~~----~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 399 SLRELDLSNNC-LGDAGIL----QLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp CCCEEECCSSS-CCHHHHH----HHHHHHTSTTCCCCEEECTTCC
T ss_pred CccEEECCCCC-CCHHHHH----HHHHHhccCCcchhheeecccc
Confidence 99999999994 4333111 000011 123457888777664
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.63 E-value=2.2e-15 Score=155.31 Aligned_cols=174 Identities=21% Similarity=0.256 Sum_probs=148.3
Q ss_pred CCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCCccccccccccc
Q 048566 320 GLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGDIAIIGKLKNLE 399 (760)
Q Consensus 320 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~ 399 (760)
..++++|+.|.+.+ +.+. .++ .+..+++|++|++++|.+..++. +..+++|++|++++|.+..++.+.++++|+
T Consensus 37 ~~~l~~L~~L~l~~--~~i~-~l~--~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFG--TGVT-TIE--GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTT--SCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCC
T ss_pred HHHcCCcCEEEeeC--CCcc-Cch--hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCC
Confidence 34678999999984 4454 355 25889999999999999999987 999999999999999998888899999999
Q ss_pred eeecccCcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCC
Q 048566 400 VLSFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLP 479 (760)
Q Consensus 400 ~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 479 (760)
+|++++|.+..+|. +..+++|++|++++| .+..+++ ++.+++|++|++++|.+.. +..+..++
T Consensus 111 ~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~-------------~~~l~~l~ 173 (308)
T 1h6u_A 111 TLDLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQVSD-------------LTPLANLS 173 (308)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCC-------------CGGGTTCT
T ss_pred EEECCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCCcCCC-------------ChhhcCCC
Confidence 99999999998875 899999999999998 6777776 8899999999999997641 22388899
Q ss_pred CCCEEEEEeccCCCCCcchhccccceeEEEecCCCCC
Q 048566 480 RLTTLEIDVKNDSILPEGFLARKLERFKISIGNESFM 516 (760)
Q Consensus 480 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l 516 (760)
+|+.|+++++....++....+++|+.|+++.|.+..+
T Consensus 174 ~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~ 210 (308)
T 1h6u_A 174 KLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDV 210 (308)
T ss_dssp TCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBC
T ss_pred CCCEEECCCCccCcChhhcCCCCCCEEEccCCccCcc
Confidence 9999999999988887766778999999988875443
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.62 E-value=1.4e-16 Score=164.95 Aligned_cols=172 Identities=17% Similarity=0.181 Sum_probs=126.1
Q ss_pred CCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCC--CChhhhh-------hhccCCeeEecCCCCCC--cccc
Q 048566 324 PNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFS--SFPSSID-------LLVNLHTLCLDQSALGD--IAII 392 (760)
Q Consensus 324 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~--~lp~~i~-------~l~~L~~L~l~~~~l~~--~~~~ 392 (760)
++|+.|+++ .+.+ .+|..+... |++|+++++.+. .+|..+. ++++|++|++++|.+.. |..+
T Consensus 43 ~~L~~l~l~--~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 43 RSLEYLLKR--VDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EECTTHHHH--CCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred CCceeEeec--cccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 455666666 3334 367665433 888888888885 4676665 78999999999999864 5555
Q ss_pred --ccccccceeecccCcccccchhhhcC-----CCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccc
Q 048566 393 --GKLKNLEVLSFLMSDIMQLPEELGQL-----NKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANS 465 (760)
Q Consensus 393 --~~l~~L~~L~l~~~~i~~lp~~~~~l-----~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 465 (760)
+.+++|++|++++|.+..+|..++.+ ++|++|++++| .+..+++..++++++|++|++++|.+.+.++
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---- 190 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELGERG---- 190 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCHHHH----
T ss_pred HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCcchH----
Confidence 88999999999999998888888877 89999999998 6888887778999999999999998654321
Q ss_pred cccCCChhhh--cCCCCCCEEEEEeccCCCCCcch-----hccccceeEEEecC
Q 048566 466 KRSNASLDEL--MHLPRLTTLEIDVKNDSILPEGF-----LARKLERFKISIGN 512 (760)
Q Consensus 466 ~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~-----~~~~L~~L~l~~~~ 512 (760)
.+..+ +.+++|+.|+++++....++... .+++|+.|+++.|.
T Consensus 191 -----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~ 239 (312)
T 1wwl_A 191 -----LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239 (312)
T ss_dssp -----HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC
T ss_pred -----HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc
Confidence 12333 77889999999888765433221 22566666666555
No 79
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.62 E-value=1.2e-16 Score=181.73 Aligned_cols=355 Identities=15% Similarity=0.117 Sum_probs=212.8
Q ss_pred CCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCC-CCCC--ChhhhhhhccCCeeEecCCCCCC--cccc----
Q 048566 322 ECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRM-QFSS--FPSSIDLLVNLHTLCLDQSALGD--IAII---- 392 (760)
Q Consensus 322 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~-~~~~--lp~~i~~l~~L~~L~l~~~~l~~--~~~~---- 392 (760)
.+++|+.|++++ +.+.+..+..+...+++|++|++.+| .+.. ++..+.++++|++|++++|.+.. +..+
T Consensus 103 ~~~~L~~L~L~~--~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 103 SYTWLEEIRLKR--MVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HCTTCCEEEEES--CBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred hCCCCCeEEeeC--cEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 578999999984 33443334444446889999999988 4543 56666689999999999998654 2323
Q ss_pred ccccccceeecccCc--cc--ccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhcccccc
Q 048566 393 GKLKNLEVLSFLMSD--IM--QLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRS 468 (760)
Q Consensus 393 ~~l~~L~~L~l~~~~--i~--~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 468 (760)
..+++|++|++++|. +. .++.-+.++++|++|++++|..+..++. .+.++++|++|++..+...-.. ...
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~-----~~~ 254 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT-LLQRAPQLEELGTGGYTAEVRP-----DVY 254 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHH-HHHHCTTCSEEECSBCCCCCCH-----HHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHH-HHhcCCcceEcccccccCccch-----hhH
Confidence 366799999999886 22 2333345679999999999876766544 3788999999997766421000 000
Q ss_pred CCChhhhcCCCCCCEE-EEEeccCCCCCcch-hccccceeEEEecCCCCCCCccccccccCCCCccc-ccccccccceee
Q 048566 469 NASLDELMHLPRLTTL-EIDVKNDSILPEGF-LARKLERFKISIGNESFMPPKCVRQDWFQSQPHFS-INSDRKSLRALK 545 (760)
Q Consensus 469 ~~~~~~l~~l~~L~~L-~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~ 545 (760)
...+..+.++++|+.| .+.......++... .+++|+.|+++.|.+... .+. .....++|+.|.
T Consensus 255 ~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~--------------~l~~~~~~~~~L~~L~ 320 (594)
T 2p1m_B 255 SGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY--------------DLVKLLCQCPKLQRLW 320 (594)
T ss_dssp HHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHH--------------HHHHHHTTCTTCCEEE
T ss_pred HHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHH--------------HHHHHHhcCCCcCEEe
Confidence 1123467788888888 33333222233222 458899998877652110 000 012445677777
Q ss_pred eccCcc--ccccccccCccceeEEEeccc--------cCccccccccCccccCCCcEEeeccCCCceeeecCCCCccc-c
Q 048566 546 LKLDFM--DICSMKLQGINNVECLWLDKL--------QGIGDVLFNLDTEGFSQLKLLWVQNNPDIFCIVDSREMVAC-D 614 (760)
Q Consensus 546 l~~~~~--~l~~l~~~~l~~L~~L~l~~~--------~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~-~ 614 (760)
+..+.. .+..+ ...+++|+.|.+..+ .............++++|++|.+. |..+... ..... .
T Consensus 321 l~~~~~~~~l~~l-~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~----~~~~l~~ 394 (594)
T 2p1m_B 321 VLDYIEDAGLEVL-ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF-CRQMTNA----ALITIAR 394 (594)
T ss_dssp EEGGGHHHHHHHH-HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE-ESCCCHH----HHHHHHH
T ss_pred CcCccCHHHHHHH-HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh-cCCcCHH----HHHHHHh
Confidence 765421 11111 234678888888442 222211100011347889998554 5444321 11111 2
Q ss_pred cccccchhhhc-----ccccccccccc-cc--cccccCCccEEEEecCCCCCcccchhhhhccCCCcEEEEecCCcchhh
Q 048566 615 AFPLLESLILH-----NLINMERVCID-RL--KVESFNQLKNIEAYNCDKLSNIFWLSTTKCLPRLERIAVVNCSKMKEI 686 (760)
Q Consensus 615 ~~p~L~~L~l~-----~~~~l~~~~~~-~~--~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l 686 (760)
.+|+|+.|++. +|.+++..+.. .+ ....+++|+.|++.+ .+++.........+++|++|++++|. ++..
T Consensus 395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~ 471 (594)
T 2p1m_B 395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDL 471 (594)
T ss_dssp HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHH
T ss_pred hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHH
Confidence 47899999998 56666643210 00 134678999999965 55554332233458999999999986 3322
Q ss_pred hcccccccccccc-ccccccCeeecCCCcc
Q 048566 687 FAIGEEVDNAIEK-IEFAQLRSLSLGNLPE 715 (760)
Q Consensus 687 ~~~~~~~~~~~~~-~~l~~L~~L~l~~c~~ 715 (760)
... .+ ..+++|++|+|++|+-
T Consensus 472 ~~~--------~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 472 GMH--------HVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HHH--------HHHHHCTTCCEEEEESCSC
T ss_pred HHH--------HHHhcCCCcCEEECcCCCC
Confidence 110 22 4589999999999974
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=1.2e-14 Score=147.12 Aligned_cols=106 Identities=23% Similarity=0.336 Sum_probs=49.7
Q ss_pred CCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCCccccccccccceeecccCcccccchh-hhcCCCCCEEecc
Q 048566 349 GMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGDIAIIGKLKNLEVLSFLMSDIMQLPEE-LGQLNKLRLLDLT 427 (760)
Q Consensus 349 ~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~ 427 (760)
.+++|+.|++.++.+..++ .++.+++|++|++++|.+..++.++++++|++|++++|.+..+|.. ++++++|++|+++
T Consensus 39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 3444444444444444433 2444445555555555444444444455555555555544444432 3444555555555
Q ss_pred ccccccccCcccccCCCCCCEEEcccccc
Q 048566 428 NCFHLKVIAPNLISSLTRLEELYMGNCFI 456 (760)
Q Consensus 428 ~~~~l~~~~~~~i~~l~~L~~L~l~~~~~ 456 (760)
+| .+..+++..++++++|++|++++|.+
T Consensus 118 ~n-~l~~~~~~~~~~l~~L~~L~L~~n~l 145 (272)
T 3rfs_A 118 EN-QLQSLPDGVFDKLTNLTYLNLAHNQL 145 (272)
T ss_dssp TS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CC-cCCccCHHHhccCCCCCEEECCCCcc
Confidence 44 34444444344455555555544433
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=1.3e-15 Score=167.55 Aligned_cols=172 Identities=16% Similarity=0.133 Sum_probs=126.7
Q ss_pred CCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCCcccccccccccee
Q 048566 322 ECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGDIAIIGKLKNLEVL 401 (760)
Q Consensus 322 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L 401 (760)
.+++|+.|+++ ++.+. .++...|..+++|++|++++|.+...++ ++.+++|++|++++|.+..++ ..++|++|
T Consensus 32 ~~~~L~~L~Ls--~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLS--GNPLS-QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECC--SSCCC-CCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCCEE
T ss_pred cCCCccEEEee--CCcCC-CCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcCEE
Confidence 34578888888 45555 3555566888888888888888876554 788888888888888776532 23788888
Q ss_pred ecccCcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhc-CCCC
Q 048566 402 SFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELM-HLPR 480 (760)
Q Consensus 402 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~ 480 (760)
++++|.+..+|. ..+++|+.|++++| .+..+++..++++++|++|++++|.+.... +..+. .+++
T Consensus 105 ~L~~N~l~~~~~--~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----------~~~l~~~l~~ 170 (487)
T 3oja_A 105 HAANNNISRVSC--SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVN-----------FAELAASSDT 170 (487)
T ss_dssp ECCSSCCCCEEE--CCCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCEEE-----------GGGGGGGTTT
T ss_pred ECcCCcCCCCCc--cccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCCcC-----------hHHHhhhCCc
Confidence 888888887764 35678888888887 677776666788888888888888765322 34444 6788
Q ss_pred CCEEEEEeccCCCCCcchhccccceeEEEecCCC
Q 048566 481 LTTLEIDVKNDSILPEGFLARKLERFKISIGNES 514 (760)
Q Consensus 481 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 514 (760)
|+.|++++|....++....+++|+.|+++.|.+.
T Consensus 171 L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~ 204 (487)
T 3oja_A 171 LEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA 204 (487)
T ss_dssp CCEEECTTSCCCEEECCCCCTTCCEEECCSSCCC
T ss_pred ccEEecCCCccccccccccCCCCCEEECCCCCCC
Confidence 8888888887776666666778888888777643
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.60 E-value=1.4e-14 Score=146.48 Aligned_cols=188 Identities=23% Similarity=0.344 Sum_probs=154.5
Q ss_pred cCCccccccchhccccceEEEeecCCCCCCCC--CCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCC
Q 048566 288 GNEDVWDWRNEDALRKCKAITLRYDSNRHFPE--GLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSS 365 (760)
Q Consensus 288 ~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~ 365 (760)
....+..++. ..+..++.+.+.++....++. ..++++|++|+++ ++.+. .++..+|.++++|++|++++|.+..
T Consensus 24 ~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~--~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~ 99 (270)
T 2o6q_A 24 SSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLN--DNKLQ-TLPAGIFKELKNLETLWVTDNKLQA 99 (270)
T ss_dssp TTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECC--SSCCS-CCCTTTTSSCTTCCEEECCSSCCCC
T ss_pred cCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECC--CCccC-eeChhhhcCCCCCCEEECCCCcCCc
Confidence 3333444442 345679999999666577765 4489999999998 45555 5888888999999999999999998
Q ss_pred Chh-hhhhhccCCeeEecCCCCCC-c-cccccccccceeecccCcccccchh-hhcCCCCCEEeccccccccccCccccc
Q 048566 366 FPS-SIDLLVNLHTLCLDQSALGD-I-AIIGKLKNLEVLSFLMSDIMQLPEE-LGQLNKLRLLDLTNCFHLKVIAPNLIS 441 (760)
Q Consensus 366 lp~-~i~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~i~ 441 (760)
+|. .+..+++|++|++++|.+.. + ..++++++|++|++++|.+..+|.. +..+++|++|++++| .+..+++..+.
T Consensus 100 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 178 (270)
T 2o6q_A 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFD 178 (270)
T ss_dssp CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTT
T ss_pred CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC-cCcEeChhHhc
Confidence 864 56899999999999999887 3 4589999999999999999999865 789999999999998 78888887789
Q ss_pred CCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEeccC
Q 048566 442 SLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKND 491 (760)
Q Consensus 442 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 491 (760)
++++|++|++++|.+.. .....+..+++|+.|+++++..
T Consensus 179 ~l~~L~~L~L~~N~l~~-----------~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 179 KLTELKTLKLDNNQLKR-----------VPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TCTTCCEEECCSSCCSC-----------CCTTTTTTCTTCCEEECCSSCB
T ss_pred cCCCcCEEECCCCcCCc-----------CCHHHhccccCCCEEEecCCCe
Confidence 99999999999997751 1234577899999999998864
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.59 E-value=3.7e-15 Score=147.79 Aligned_cols=128 Identities=16% Similarity=0.209 Sum_probs=59.2
Q ss_pred CccEEEeeccCCcccccCCchhhcCCCCceEEEecCCC-CCCChh-hhhhhccCCeeEecC-CCCCC-c-cccccccccc
Q 048566 325 NLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQ-FSSFPS-SIDLLVNLHTLCLDQ-SALGD-I-AIIGKLKNLE 399 (760)
Q Consensus 325 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~lp~-~i~~l~~L~~L~l~~-~~l~~-~-~~~~~l~~L~ 399 (760)
+++.|+++ ++.+. .++...|.++++|++|++++|. +..++. .+..+++|++|++++ |.+.. + ..+.++++|+
T Consensus 32 ~l~~L~l~--~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 32 STQTLKLI--ETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp TCCEEEEE--SCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred cccEEEEe--CCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 44455544 23332 2333344445555555555553 444432 344455555555554 44444 1 2344455555
Q ss_pred eeecccCcccccchhhhcCCCCC---EEeccccccccccCcccccCCCCCC-EEEcccccc
Q 048566 400 VLSFLMSDIMQLPEELGQLNKLR---LLDLTNCFHLKVIAPNLISSLTRLE-ELYMGNCFI 456 (760)
Q Consensus 400 ~L~l~~~~i~~lp~~~~~l~~L~---~L~l~~~~~l~~~~~~~i~~l~~L~-~L~l~~~~~ 456 (760)
+|++++|.+..+|. ++.+++|+ +|++++|..+..+++..+..+++|+ +|++++|.+
T Consensus 109 ~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 109 FLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp EEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred EEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence 55555555444443 44444444 5555544344444444444455555 555544443
No 84
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=1.8e-15 Score=166.22 Aligned_cols=98 Identities=16% Similarity=0.213 Sum_probs=66.2
Q ss_pred CceEEEecCCCCCCC-hhhhhhhccCCeeEecCCCCCCccccccccccceeecccCcccccchhhhcCCCCCEEeccccc
Q 048566 352 KLRVLDFTRMQFSSF-PSSIDLLVNLHTLCLDQSALGDIAIIGKLKNLEVLSFLMSDIMQLPEELGQLNKLRLLDLTNCF 430 (760)
Q Consensus 352 ~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~ 430 (760)
+|++|++++|.+..+ |..++.+++|++|++++|.+.....++.+++|++|++++|.+..+|. .++|++|++++|
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~N- 109 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANN- 109 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSS-
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC----CCCcCEEECcCC-
Confidence 677777777777765 35677777777777777777653337777777777777777766653 267777777776
Q ss_pred cccccCcccccCCCCCCEEEccccccc
Q 048566 431 HLKVIAPNLISSLTRLEELYMGNCFIE 457 (760)
Q Consensus 431 ~l~~~~~~~i~~l~~L~~L~l~~~~~~ 457 (760)
.+..+++. .+++|++|++++|.+.
T Consensus 110 ~l~~~~~~---~l~~L~~L~L~~N~l~ 133 (487)
T 3oja_A 110 NISRVSCS---RGQGKKNIYLANNKIT 133 (487)
T ss_dssp CCCCEEEC---CCSSCEEEECCSSCCC
T ss_pred cCCCCCcc---ccCCCCEEECCCCCCC
Confidence 55555542 4566777777766654
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.58 E-value=2.2e-14 Score=146.39 Aligned_cols=169 Identities=25% Similarity=0.338 Sum_probs=98.4
Q ss_pred cccceEEEeecCCCCCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeE
Q 048566 301 LRKCKAITLRYDSNRHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLC 380 (760)
Q Consensus 301 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~ 380 (760)
.+.++.+.+.++....++....+++|++|+++ ++.+. .++. +.++++|++|++++|.+..+|. ++.+++|++|+
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~--~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLN--GNKLT-DIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECC--SSCCC-CCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccChhHhcCCCCCEEEcc--CCccC-CCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence 44566666664444555554556666666666 33333 2332 4566666666666666665443 66666666666
Q ss_pred ecCCCCCCccccccccccceeecccCcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhh
Q 048566 381 LDQSALGDIAIIGKLKNLEVLSFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEV 460 (760)
Q Consensus 381 l~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~ 460 (760)
+++|.+..++.+..+++|++|++++|.+..+ ..++.+++|++|++++| .+..+++ +..+++|++|++++|.+.
T Consensus 119 L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~L~~N~i~--- 191 (291)
T 1h6t_A 119 LEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHIS--- 191 (291)
T ss_dssp CTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCC---
T ss_pred CCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC-ccccchh--hcCCCccCEEECCCCcCC---
Confidence 6666666655566666666666666666655 34666666666666665 4555544 566666666666666543
Q ss_pred hhccccccCCChhhhcCCCCCCEEEEEeccCC
Q 048566 461 ERANSKRSNASLDELMHLPRLTTLEIDVKNDS 492 (760)
Q Consensus 461 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 492 (760)
.+..+..+++|+.|+++++...
T Consensus 192 ----------~l~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 192 ----------DLRALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp ----------BCGGGTTCTTCSEEEEEEEEEE
T ss_pred ----------CChhhccCCCCCEEECcCCccc
Confidence 0223555666666666655443
No 86
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.58 E-value=1.3e-14 Score=148.04 Aligned_cols=173 Identities=21% Similarity=0.239 Sum_probs=148.2
Q ss_pred CCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCCccccccccccc
Q 048566 320 GLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGDIAIIGKLKNLE 399 (760)
Q Consensus 320 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~ 399 (760)
..++++|+.|+++ .+.+. .++. +..+++|++|++++|.+..++. ++.+++|++|++++|.+..++.++++++|+
T Consensus 42 ~~~l~~L~~L~l~--~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIAN--NSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECT--TSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCC
T ss_pred hhhcCcccEEEcc--CCCcc-cChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCC
Confidence 3467889999998 44454 3543 6889999999999999999887 999999999999999999988899999999
Q ss_pred eeecccCcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCC
Q 048566 400 VLSFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLP 479 (760)
Q Consensus 400 ~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 479 (760)
+|++++|.+..++ .+..+++|++|++++| .+..++ .++.+++|++|++++|.+.. ...+..++
T Consensus 116 ~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~L~~N~l~~-------------~~~l~~l~ 178 (291)
T 1h6t_A 116 SLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDIT--VLSRLTKLDTLSLEDNQISD-------------IVPLAGLT 178 (291)
T ss_dssp EEECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCG--GGGGCTTCSEEECCSSCCCC-------------CGGGTTCT
T ss_pred EEECCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcch--hhccCCCCCEEEccCCcccc-------------chhhcCCC
Confidence 9999999999885 6899999999999998 677773 38999999999999997751 12288899
Q ss_pred CCCEEEEEeccCCCCCcchhccccceeEEEecCCCC
Q 048566 480 RLTTLEIDVKNDSILPEGFLARKLERFKISIGNESF 515 (760)
Q Consensus 480 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 515 (760)
+|+.|+++++....++....+++|+.|+++.|.+..
T Consensus 179 ~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 179 KLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEEEC
T ss_pred ccCEEECCCCcCCCChhhccCCCCCEEECcCCcccC
Confidence 999999999998888776677999999999887544
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.58 E-value=4.5e-15 Score=147.22 Aligned_cols=192 Identities=15% Similarity=0.206 Sum_probs=103.2
Q ss_pred ccccceEEEeecCCCCCCCC--CCCCCCccEEEeeccCCc-ccccCCchhhcCCCCceEEEecC-CCCCCCh-hhhhhhc
Q 048566 300 ALRKCKAITLRYDSNRHFPE--GLECPNLEFLCISLKDSS-LEINIPGNFFIGMKKLRVLDFTR-MQFSSFP-SSIDLLV 374 (760)
Q Consensus 300 ~~~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~-~~~~~~~~~~~~l~~Lr~L~l~~-~~~~~lp-~~i~~l~ 374 (760)
....++.+.+..+....++. ..++++|++|+++ ++. +. .++...|.++++|++|++++ +.+..+| ..+..++
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~--~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~ 105 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVS--IDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP 105 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEE--CCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCC--CCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC
Confidence 34456666666444445544 2256666666666 232 32 35554556666666666665 6666554 3455666
Q ss_pred cCCeeEecCCCCCCccccccccccc---eeecccC-cccccchh-hhcCCCCC-EEeccccccccccCcccccCCCCCCE
Q 048566 375 NLHTLCLDQSALGDIAIIGKLKNLE---VLSFLMS-DIMQLPEE-LGQLNKLR-LLDLTNCFHLKVIAPNLISSLTRLEE 448 (760)
Q Consensus 375 ~L~~L~l~~~~l~~~~~~~~l~~L~---~L~l~~~-~i~~lp~~-~~~l~~L~-~L~l~~~~~l~~~~~~~i~~l~~L~~ 448 (760)
+|++|++++|.+..++.++.+.+|+ +|++++| .+..+|.. +.++++|+ .|++++| .+..+|...+.. ++|++
T Consensus 106 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~-~~L~~ 183 (239)
T 2xwt_C 106 LLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNG-TKLDA 183 (239)
T ss_dssp TCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTT-CEEEE
T ss_pred CCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCC-CCCCE
Confidence 6666666666665533355555555 6666666 66655543 55666666 6666665 455555543333 56666
Q ss_pred EEccccc-cchhhhhccccccCCChhhhcCC-CCCCEEEEEeccCCCCCcchhccccceeEE
Q 048566 449 LYMGNCF-IEWEVERANSKRSNASLDELMHL-PRLTTLEIDVKNDSILPEGFLARKLERFKI 508 (760)
Q Consensus 449 L~l~~~~-~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 508 (760)
|++++|. +. .+ ....+..+ ++|+.|+++++....+|.. .+++|+.|++
T Consensus 184 L~L~~n~~l~-~i----------~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l 233 (239)
T 2xwt_C 184 VYLNKNKYLT-VI----------DKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIA 233 (239)
T ss_dssp EECTTCTTCC-EE----------CTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEEC
T ss_pred EEcCCCCCcc-cC----------CHHHhhccccCCcEEECCCCccccCChh-HhccCceeec
Confidence 6666663 32 11 12334455 5566666655554444433 3344444443
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.58 E-value=9.4e-15 Score=148.38 Aligned_cols=181 Identities=20% Similarity=0.338 Sum_probs=116.5
Q ss_pred CCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCCh-hhhhhhccCCeeEecCCCCCC--ccccccccccce
Q 048566 324 PNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFP-SSIDLLVNLHTLCLDQSALGD--IAIIGKLKNLEV 400 (760)
Q Consensus 324 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~ 400 (760)
+++++|+++ ++.+. .++...|.++++|++|++++|.+..++ ..+..+++|++|++++|.+.. +..+.++.+|++
T Consensus 28 ~~l~~L~ls--~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLS--FNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECT--TCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CCccEEECC--CCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccE
Confidence 467777777 44444 355555677778888888887777654 367777788888888887766 345777778888
Q ss_pred eecccCcccccch-hhhcCCCCCEEeccccccccccC-cccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCC
Q 048566 401 LSFLMSDIMQLPE-ELGQLNKLRLLDLTNCFHLKVIA-PNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHL 478 (760)
Q Consensus 401 L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~~-~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l 478 (760)
|++++|.+..++. .++++++|++|++++| .+..+. +..++++++|++|++++|.+.... ...+..+..+
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~--------~~~~~~l~~L 175 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY--------CTDLRVLHQM 175 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEEC--------GGGGHHHHTC
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCCCCcCC--------HHHhhhhhhc
Confidence 8888877776654 5777778888888776 455532 334777788888888777654211 1123334444
Q ss_pred CCCC-EEEEEeccCCCCCcchh-ccccceeEEEecCCCCC
Q 048566 479 PRLT-TLEIDVKNDSILPEGFL-ARKLERFKISIGNESFM 516 (760)
Q Consensus 479 ~~L~-~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~l 516 (760)
+.|. .|+++++....++...+ ..+|+.|+++.|.+..+
T Consensus 176 ~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~ 215 (276)
T 2z62_A 176 PLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSV 215 (276)
T ss_dssp TTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCC
T ss_pred cccceeeecCCCcccccCccccCCCcccEEECCCCceeec
Confidence 4444 67777766655544332 24677777776665444
No 89
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.58 E-value=6.9e-15 Score=149.38 Aligned_cols=199 Identities=21% Similarity=0.282 Sum_probs=161.2
Q ss_pred hccccceEEEeecCCCCCCCC--CCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCCh-hhhhhhcc
Q 048566 299 DALRKCKAITLRYDSNRHFPE--GLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFP-SSIDLLVN 375 (760)
Q Consensus 299 ~~~~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~ 375 (760)
..++.++.+.+.++....++. ..++++|++|+++ ++.+. .++...|.++++|++|++++|.+..++ ..+..+++
T Consensus 25 ~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~--~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (276)
T 2z62_A 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS--RCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (276)
T ss_dssp SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECT--TCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred CCCCCccEEECCCCcccccCHhHhccccCCcEEECC--CCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCcc
Confidence 345679999998665566664 4489999999999 45555 466667899999999999999998765 67999999
Q ss_pred CCeeEecCCCCCC-c-cccccccccceeecccCcccc--cchhhhcCCCCCEEeccccccccccCcccccCCCCCC----
Q 048566 376 LHTLCLDQSALGD-I-AIIGKLKNLEVLSFLMSDIMQ--LPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLE---- 447 (760)
Q Consensus 376 L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~---- 447 (760)
|++|++++|.+.. + ..++++++|++|++++|.+.. +|..++++++|++|++++| .+..+++..+..+++|+
T Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~l~l 180 (276)
T 2z62_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNL 180 (276)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCE
T ss_pred ccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhccccce
Confidence 9999999999887 3 368999999999999999986 6889999999999999998 78888776677777777
Q ss_pred EEEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEeccCCCCCcch--hccccceeEEEecCC
Q 048566 448 ELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDSILPEGF--LARKLERFKISIGNE 513 (760)
Q Consensus 448 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~ 513 (760)
+|++++|.+... +.......+|+.|+++++....++... .+++|+.|+++.|.+
T Consensus 181 ~L~ls~n~l~~~------------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 181 SLDLSLNPMNFI------------QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp EEECCSSCCCEE------------CTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred eeecCCCccccc------------CccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 899999977521 122223448999999999988887754 468999999988863
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.57 E-value=3.6e-14 Score=141.76 Aligned_cols=173 Identities=23% Similarity=0.309 Sum_probs=121.0
Q ss_pred ceEEEeecCCCCCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCCh-hhhhhhccCCeeEec
Q 048566 304 CKAITLRYDSNRHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFP-SSIDLLVNLHTLCLD 382 (760)
Q Consensus 304 ~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~ 382 (760)
.+.+.........+|.... +.++.|+++ ++.+. .++...|.++++|++|++++|.+..++ ..+..+++|++|+++
T Consensus 16 ~~~l~~~~~~l~~~p~~~~-~~l~~L~L~--~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP-ADTEKLDLQ--STGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC-TTCCEEECT--TSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CeEEecCCCCccccCCCCC-CCCCEEEcc--CCCcC-ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3455555444456665443 577888887 44454 355555678888888888888887664 446778888888888
Q ss_pred CCCCCC-c-cccccccccceeecccCcccccchh-hhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchh
Q 048566 383 QSALGD-I-AIIGKLKNLEVLSFLMSDIMQLPEE-LGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWE 459 (760)
Q Consensus 383 ~~~l~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~ 459 (760)
+|.+.. + ..++.+.+|++|++++|.+..+|.. +..+++|++|++++| .+..+++..++.+++|++|++++|.+..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~- 169 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQS- 169 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC-
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCc-
Confidence 888776 3 4567788888888888888877754 477888888888887 6777777667788888888888876641
Q ss_pred hhhccccccCCChhhhcCCCCCCEEEEEeccCC
Q 048566 460 VERANSKRSNASLDELMHLPRLTTLEIDVKNDS 492 (760)
Q Consensus 460 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 492 (760)
.....+..+++|+.|++++|...
T Consensus 170 ----------~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 170 ----------VPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp ----------CCTTTTTTCTTCCEEECCSCCBC
T ss_pred ----------cCHHHHhCCCCCCEEEeeCCcee
Confidence 12345667777777777766543
No 91
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.56 E-value=3.8e-14 Score=143.39 Aligned_cols=173 Identities=23% Similarity=0.316 Sum_probs=112.0
Q ss_pred cccceEEEeecCCCCCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChh-hhhhhccCCee
Q 048566 301 LRKCKAITLRYDSNRHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPS-SIDLLVNLHTL 379 (760)
Q Consensus 301 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L 379 (760)
.+.++.+.+.++....++....+++|++|+++ ++.+. .++ .+..+++|++|++++|.+..++. .++.+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~--~n~l~-~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALG--GNKLH-DIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HTTCCEEECTTSCCCCCTTGGGCTTCCEEECT--TSCCC-CCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccceeeeeeCCCCcccccccccCCCCcEEECC--CCCCC-Cch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 55667777765544556655667777777777 34443 122 35677777777777777776654 35677777777
Q ss_pred EecCCCCCC-c-cccccccccceeecccCcccccchh-hhcCCCCCEEeccccccccccCcccccCCCCCCEEEcccccc
Q 048566 380 CLDQSALGD-I-AIIGKLKNLEVLSFLMSDIMQLPEE-LGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFI 456 (760)
Q Consensus 380 ~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~ 456 (760)
++++|.+.. + ..++++++|++|++++|.+..+|.. ++++++|++|++++| .+..+++..++.+++|++|++++|.+
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcC
Confidence 777777666 3 3366777777777777777766644 466777777777776 56666666566777777777777765
Q ss_pred chhhhhccccccCCChhhhcCCCCCCEEEEEecc
Q 048566 457 EWEVERANSKRSNASLDELMHLPRLTTLEIDVKN 490 (760)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 490 (760)
.. ..+..+..+++|+.|++++|.
T Consensus 194 ~~-----------~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 194 KS-----------VPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp SC-----------CCTTTTTTCTTCCEEECCSSC
T ss_pred Cc-----------cCHHHHhCCcCCCEEEccCCC
Confidence 41 112345666777777776654
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.55 E-value=6.3e-14 Score=147.41 Aligned_cols=80 Identities=14% Similarity=0.071 Sum_probs=59.6
Q ss_pred cCCCcEEeeccCCCceeeecCCCCcccccccccchhhhcccccccccccccccccccCCccEEEEecCCCCCcccchhhh
Q 048566 587 FSQLKLLWVQNNPDIFCIVDSREMVACDAFPLLESLILHNLINMERVCIDRLKVESFNQLKNIEAYNCDKLSNIFWLSTT 666 (760)
Q Consensus 587 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~ 666 (760)
..+|+.|.+.++..++.++.. ....+++|++|++++. .++.+ +.+.|.+|+.|.+.+|.+++.+|. +
T Consensus 176 ~~~L~~l~l~~~n~l~~i~~~----~f~~l~~L~~LdLs~N-~l~~l-----p~~~~~~L~~L~~l~~~~l~~lP~---l 242 (350)
T 4ay9_X 176 GTQLDELNLSDNNNLEELPND----VFHGASGPVILDISRT-RIHSL-----PSYGLENLKKLRARSTYNLKKLPT---L 242 (350)
T ss_dssp TEEEEEEECTTCTTCCCCCTT----TTTTEECCSEEECTTS-CCCCC-----CSSSCTTCCEEECTTCTTCCCCCC---T
T ss_pred ccchhHHhhccCCcccCCCHH----HhccCcccchhhcCCC-CcCcc-----ChhhhccchHhhhccCCCcCcCCC---c
Confidence 467888888888888777522 2356788888888875 46655 345688888888888888888874 5
Q ss_pred hccCCCcEEEEec
Q 048566 667 KCLPRLERIAVVN 679 (760)
Q Consensus 667 ~~l~~L~~L~l~~ 679 (760)
..+++|+.+++.+
T Consensus 243 ~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 243 EKLVALMEASLTY 255 (350)
T ss_dssp TTCCSCCEEECSC
T ss_pred hhCcChhhCcCCC
Confidence 7788888888864
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.55 E-value=4.9e-15 Score=155.27 Aligned_cols=124 Identities=21% Similarity=0.154 Sum_probs=72.7
Q ss_pred ceEEEecCCCCCCChhhhhhh--ccCCeeEecCCCCCC-ccccccccccceeecccCcccc--cchhhhcCCCCCEEecc
Q 048566 353 LRVLDFTRMQFSSFPSSIDLL--VNLHTLCLDQSALGD-IAIIGKLKNLEVLSFLMSDIMQ--LPEELGQLNKLRLLDLT 427 (760)
Q Consensus 353 Lr~L~l~~~~~~~lp~~i~~l--~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~ 427 (760)
++.++++++.+. +..+..+ .++++|+++++.+.. ++.+.++.+|++|++++|.+.. +|..+.++++|++|+++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 555666655544 4455555 666777776666655 4455666777777777776552 56666677777777777
Q ss_pred ccccccccCcccccCCCCCCEEEccccc-cchhhhhccccccCCChhhhcCCCCCCEEEEEec
Q 048566 428 NCFHLKVIAPNLISSLTRLEELYMGNCF-IEWEVERANSKRSNASLDELMHLPRLTTLEIDVK 489 (760)
Q Consensus 428 ~~~~l~~~~~~~i~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 489 (760)
+| .+....+..++++++|++|++++|. +... .....+..+++|+.|+++++
T Consensus 127 ~~-~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~----------~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 127 GL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEF----------ALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp TC-BCCHHHHHHHTTCTTCSEEECTTCBSCCHH----------HHHHHHHHCTTCCEEECCCC
T ss_pred Cc-ccCHHHHHHHhcCCCCCEEECCCCCCCCHH----------HHHHHHhcCCCCCEEcCCCC
Confidence 76 3443333346667777777777663 3210 01233555666666666544
No 94
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=2.3e-14 Score=137.27 Aligned_cols=148 Identities=16% Similarity=0.245 Sum_probs=92.5
Q ss_pred CCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCC--ccccccccccc
Q 048566 322 ECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGD--IAIIGKLKNLE 399 (760)
Q Consensus 322 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~ 399 (760)
++++|+.|+++ ++.+. .+| . +..+++|++|++++|.+..++ .+..+++|++|++++|.+.. +..++.+++|+
T Consensus 42 ~l~~L~~L~l~--~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 42 QMNSLTYITLA--NINVT-DLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHTCCEEEEE--SSCCS-CCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hcCCccEEecc--CCCcc-ChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 45667777776 33443 344 2 466677777777777655544 56667777777777777654 56666777777
Q ss_pred eeecccCcccc-cchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCC
Q 048566 400 VLSFLMSDIMQ-LPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHL 478 (760)
Q Consensus 400 ~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l 478 (760)
+|++++|.+.. .|..++.+++|++|++++|..+..++. +..+++|++|++++|.+.. +..+..+
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~-------------~~~l~~l 180 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD-------------YRGIEDF 180 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC-------------CTTGGGC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC-------------hHHhccC
Confidence 77777776663 455666777777777777643555552 6667777777777665531 2245566
Q ss_pred CCCCEEEEEecc
Q 048566 479 PRLTTLEIDVKN 490 (760)
Q Consensus 479 ~~L~~L~l~~~~ 490 (760)
++|+.|+++++.
T Consensus 181 ~~L~~L~l~~N~ 192 (197)
T 4ezg_A 181 PKLNQLYAFSQT 192 (197)
T ss_dssp SSCCEEEECBC-
T ss_pred CCCCEEEeeCcc
Confidence 666666666554
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.51 E-value=4.1e-14 Score=158.51 Aligned_cols=168 Identities=25% Similarity=0.335 Sum_probs=90.8
Q ss_pred cccceEEEeecCCCCCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeE
Q 048566 301 LRKCKAITLRYDSNRHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLC 380 (760)
Q Consensus 301 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~ 380 (760)
+..++.+.+.++....++....+++|+.|+|+ .+.+. .++. +..+++|+.|+|++|.+..+| .++.+++|++|+
T Consensus 42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls--~N~l~-~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLN--GNKLT-DIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECT--TSCCC-CCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCCCChHHccCCCCCEEEee--CCCCC-CChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 44555555553333445544455666666665 33333 1222 455566666666666555544 455566666666
Q ss_pred ecCCCCCCccccccccccceeecccCcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhh
Q 048566 381 LDQSALGDIAIIGKLKNLEVLSFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEV 460 (760)
Q Consensus 381 l~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~ 460 (760)
|++|.+..++.+..+++|+.|+|++|.+..+ ..++.+++|+.|++++| .+..+++ +..+++|+.|++++|.+..
T Consensus 116 Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~~-- 189 (605)
T 1m9s_A 116 LEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHISD-- 189 (605)
T ss_dssp CTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCB--
T ss_pred ecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEEECcCCCCCC--
Confidence 6666655555555566666666666655555 34555666666666655 4444444 5556666666666554430
Q ss_pred hhccccccCCChhhhcCCCCCCEEEEEeccC
Q 048566 461 ERANSKRSNASLDELMHLPRLTTLEIDVKND 491 (760)
Q Consensus 461 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 491 (760)
+..+..+++|+.|+++++..
T Consensus 190 -----------l~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 190 -----------LRALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp -----------CGGGTTCTTCSEEECCSEEE
T ss_pred -----------ChHHccCCCCCEEEccCCcC
Confidence 13455555666666555543
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.50 E-value=4e-14 Score=146.26 Aligned_cols=179 Identities=14% Similarity=0.093 Sum_probs=98.8
Q ss_pred CCCccEEEeeccCCcccccCCchhh-cCCCCceEEEecCCCCCCC-h----hhhhhhccCCeeEecCCCCCC--cccccc
Q 048566 323 CPNLEFLCISLKDSSLEINIPGNFF-IGMKKLRVLDFTRMQFSSF-P----SSIDLLVNLHTLCLDQSALGD--IAIIGK 394 (760)
Q Consensus 323 ~~~Lr~L~l~~~~~~~~~~~~~~~~-~~l~~Lr~L~l~~~~~~~l-p----~~i~~l~~L~~L~l~~~~l~~--~~~~~~ 394 (760)
+++|+.|+++ ++.+.+..|..++ ..+++|++|++++|.+... + ..+..+++|++|++++|.+.. +..++.
T Consensus 90 ~~~L~~L~l~--~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 167 (310)
T 4glp_A 90 YSRLKELTLE--DLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA 167 (310)
T ss_dssp HSCCCEEEEE--SCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred cCceeEEEee--CCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence 3456666666 3444433444433 5666666666666666532 1 223346666666666666655 245666
Q ss_pred ccccceeecccCcccc---cch--hhhcCCCCCEEeccccccccccCcc---cccCCCCCCEEEccccccchhhhhcccc
Q 048566 395 LKNLEVLSFLMSDIMQ---LPE--ELGQLNKLRLLDLTNCFHLKVIAPN---LISSLTRLEELYMGNCFIEWEVERANSK 466 (760)
Q Consensus 395 l~~L~~L~l~~~~i~~---lp~--~~~~l~~L~~L~l~~~~~l~~~~~~---~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 466 (760)
+++|++|++++|++.. ++. .++++++|++|++++| .++.++.. .++.+++|++|++++|.+...
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~------- 239 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRAT------- 239 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC-------
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCcc-------
Confidence 6666666666665542 222 1245666666666666 45443321 235566666666666665421
Q ss_pred ccCCChhhhcC---CCCCCEEEEEeccCCCCCcchhccccceeEEEecCCCCC
Q 048566 467 RSNASLDELMH---LPRLTTLEIDVKNDSILPEGFLARKLERFKISIGNESFM 516 (760)
Q Consensus 467 ~~~~~~~~l~~---l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l 516 (760)
.+..+.. +++|+.|++++|....+|.... ++|+.|+++.|.+..+
T Consensus 240 ----~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~-~~L~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 240 ----VNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP-AKLRVLDLSSNRLNRA 287 (310)
T ss_dssp ----CCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC-SCCSCEECCSCCCCSC
T ss_pred ----chhhHHhccCcCcCCEEECCCCCCCchhhhhc-CCCCEEECCCCcCCCC
Confidence 1222222 2566666666666665555443 5666666666664443
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.50 E-value=1.8e-13 Score=136.69 Aligned_cols=171 Identities=20% Similarity=0.279 Sum_probs=140.1
Q ss_pred CccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCCh-hhhhhhccCCeeEecCCCCCC--cccccccccccee
Q 048566 325 NLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFP-SSIDLLVNLHTLCLDQSALGD--IAIIGKLKNLEVL 401 (760)
Q Consensus 325 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L 401 (760)
..+.++++ .+.+. .+|..+. ++|+.|+++++.+..++ ..++.+++|++|++++|.+.. +..+.++++|++|
T Consensus 15 ~~~~l~~~--~~~l~-~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 15 GKKEVDCQ--GKSLD-SVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL 88 (251)
T ss_dssp GGTEEECT--TCCCS-SCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCeEEecC--CCCcc-ccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEE
Confidence 45667776 44454 5776542 68999999999999774 578999999999999999887 3458999999999
Q ss_pred ecccCcccccch-hhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCC
Q 048566 402 SFLMSDIMQLPE-ELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPR 480 (760)
Q Consensus 402 ~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 480 (760)
++++|.+..+|. .+..+++|++|++++| .+..+++..++.+++|++|++++|.+.. .....++.+++
T Consensus 89 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~l~~ 156 (251)
T 3m19_A 89 GLANNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQS-----------IPAGAFDKLTN 156 (251)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC-----------CCTTTTTTCTT
T ss_pred ECCCCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCc-----------cCHHHcCcCcC
Confidence 999999998875 5689999999999998 7889988878899999999999997751 22346888999
Q ss_pred CCEEEEEeccCCCCCcch--hccccceeEEEecCC
Q 048566 481 LTTLEIDVKNDSILPEGF--LARKLERFKISIGNE 513 (760)
Q Consensus 481 L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~ 513 (760)
|+.|+++++....++... .+++|+.|+++.|.+
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 999999999988777543 458899999988874
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.50 E-value=9.7e-14 Score=155.52 Aligned_cols=177 Identities=21% Similarity=0.244 Sum_probs=148.7
Q ss_pred CCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCCccccccccc
Q 048566 318 PEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGDIAIIGKLKN 397 (760)
Q Consensus 318 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~ 397 (760)
.....++.|+.|.++ .+.+. .++. +..+++|+.|+|++|.+..++. +..+++|++|+|++|.+..++.++.+++
T Consensus 37 ~~~~~L~~L~~L~l~--~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~ 110 (605)
T 1m9s_A 37 VTQNELNSIDQIIAN--NSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKK 110 (605)
T ss_dssp ECHHHHTTCCCCBCT--TCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTT
T ss_pred cchhcCCCCCEEECc--CCCCC-CChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhccCCC
Confidence 334467889999888 44454 3543 6889999999999999998887 8999999999999999998888999999
Q ss_pred cceeecccCcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcC
Q 048566 398 LEVLSFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMH 477 (760)
Q Consensus 398 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 477 (760)
|++|++++|.+..++ .+..+++|+.|++++| .+..++ .++.+++|+.|++++|.+.. +..+..
T Consensus 111 L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~--~l~~l~~L~~L~Ls~N~l~~-------------~~~l~~ 173 (605)
T 1m9s_A 111 LKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDIT--VLSRLTKLDTLSLEDNQISD-------------IVPLAG 173 (605)
T ss_dssp CCEEECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCG--GGGSCTTCSEEECCSSCCCC-------------CGGGTT
T ss_pred CCEEEecCCCCCCCc-cccCCCccCEEECCCC-ccCCch--hhcccCCCCEEECcCCcCCC-------------chhhcc
Confidence 999999999998875 5899999999999998 677773 38999999999999998752 112888
Q ss_pred CCCCCEEEEEeccCCCCCcchhccccceeEEEecCCCCCC
Q 048566 478 LPRLTTLEIDVKNDSILPEGFLARKLERFKISIGNESFMP 517 (760)
Q Consensus 478 l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~ 517 (760)
+++|+.|++++|....++....+++|+.|+++.|.+...|
T Consensus 174 l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 174 LTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEECCC
T ss_pred CCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCcCCc
Confidence 9999999999999888877677899999999988765543
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=1.5e-13 Score=131.55 Aligned_cols=145 Identities=19% Similarity=0.151 Sum_probs=68.9
Q ss_pred ccceEEEeecCCCCCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCC-ChhhhhhhccCCeeE
Q 048566 302 RKCKAITLRYDSNRHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSS-FPSSIDLLVNLHTLC 380 (760)
Q Consensus 302 ~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~i~~l~~L~~L~ 380 (760)
++++.+.+.++....++....+++|++|+++++ .+. .+. .+..+++|++|++++|.+.. .|..++.+++|++|+
T Consensus 44 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n--~~~--~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNI--HAT--NYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HTCCEEEEESSCCSCCTTGGGCTTCSEEEEESC--CCS--CCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred CCccEEeccCCCccChHHHhcCCCCCEEEccCC--CCC--cch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 344555555333344443334555555555522 222 111 23445555555555555542 344455555555555
Q ss_pred ecCCCCCC--ccccccccccceeecccCc-ccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccc
Q 048566 381 LDQSALGD--IAIIGKLKNLEVLSFLMSD-IMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCF 455 (760)
Q Consensus 381 l~~~~l~~--~~~~~~l~~L~~L~l~~~~-i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~ 455 (760)
+++|.+.. +..++++++|++|++++|. +..+| .+.++++|++|++++| .+..++ .+..+++|++|++++|.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~--~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYR--GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCT--TGGGCSSCCEEEECBC-
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChH--HhccCCCCCEEEeeCcc
Confidence 55555443 3445555555555555554 44444 3455555555555554 344443 14455555555555544
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.48 E-value=1.4e-13 Score=142.20 Aligned_cols=195 Identities=14% Similarity=0.096 Sum_probs=149.6
Q ss_pred ccceEEEeecCC-CCCCCCC---CCCCCccEEEeeccCCcccccCC---chhhcCCCCceEEEecCCCCCCCh-hhhhhh
Q 048566 302 RKCKAITLRYDS-NRHFPEG---LECPNLEFLCISLKDSSLEINIP---GNFFIGMKKLRVLDFTRMQFSSFP-SSIDLL 373 (760)
Q Consensus 302 ~~~r~l~l~~~~-~~~~~~~---~~~~~Lr~L~l~~~~~~~~~~~~---~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l 373 (760)
..++.+.+.++. ....+.. .++++|++|+++ ++.+.+..+ ...+..+++|++|++++|.+..++ ..++.+
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls--~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLR--NVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEE--SCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEee--cccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 458888888443 3344443 578999999999 455543233 123457999999999999998775 688999
Q ss_pred ccCCeeEecCCCCCC----c--cccccccccceeecccCcccccchh----hhcCCCCCEEeccccccccccCcccccCC
Q 048566 374 VNLHTLCLDQSALGD----I--AIIGKLKNLEVLSFLMSDIMQLPEE----LGQLNKLRLLDLTNCFHLKVIAPNLISSL 443 (760)
Q Consensus 374 ~~L~~L~l~~~~l~~----~--~~~~~l~~L~~L~l~~~~i~~lp~~----~~~l~~L~~L~l~~~~~l~~~~~~~i~~l 443 (760)
++|++|++++|.+.. + ..++++++|++|++++|+++.+|.. ++.+++|++|++++| .+....+..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~ 247 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN-SLRATVNPSAPRC 247 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCSCCSSC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC-CCCccchhhHHhc
Confidence 999999999999643 1 2247899999999999999877653 578899999999998 6777633336666
Q ss_pred ---CCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEeccCCCCCcchhccccceeEEEecCC
Q 048566 444 ---TRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDSILPEGFLARKLERFKISIGNE 513 (760)
Q Consensus 444 ---~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 513 (760)
++|++|++++|.+. .+ +..+. ++|+.|++++|....+|....+++|+.|+++.|.+
T Consensus 248 ~~~~~L~~L~Ls~N~l~-~l-----------p~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 248 MWSSALNSLNLSFAGLE-QV-----------PKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CCCTTCCCEECCSSCCC-SC-----------CSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTT
T ss_pred cCcCcCCEEECCCCCCC-ch-----------hhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcCCCC
Confidence 69999999999875 22 22332 79999999999988877766779999999988874
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.46 E-value=5.8e-13 Score=130.71 Aligned_cols=146 Identities=23% Similarity=0.350 Sum_probs=110.3
Q ss_pred EEeecCCCCCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChh-hhhhhccCCeeEecCCC
Q 048566 307 ITLRYDSNRHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPS-SIDLLVNLHTLCLDQSA 385 (760)
Q Consensus 307 l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~ 385 (760)
+.........+|.... ++|+.|+++ ++.+. .++...|..+++|++|++++|.+..+|. .+..+++|++|++++|.
T Consensus 24 v~c~~~~l~~ip~~~~-~~L~~L~Ls--~n~i~-~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 24 VDCRSKRHASVPAGIP-TNAQILYLH--DNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp EECTTSCCSSCCSCCC-TTCSEEECC--SSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred eEccCCCcCccCCCCC-CCCCEEEcC--CCccC-ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 3333444455665433 788888888 55555 3545566888888888888888887764 45788888888888888
Q ss_pred CCC-c-cccccccccceeecccCcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccc
Q 048566 386 LGD-I-AIIGKLKNLEVLSFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIE 457 (760)
Q Consensus 386 l~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~ 457 (760)
+.. + ..+..+.+|++|++++|++..+|..+.++++|++|++++| .+..+++..+..+++|++|++++|.+.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 877 3 3367888888888888888888888888888888888887 677887776788888888888888764
No 102
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.45 E-value=5.1e-13 Score=140.44 Aligned_cols=101 Identities=14% Similarity=0.153 Sum_probs=43.9
Q ss_pred CceEEEecCCCCCCChh-hhhhhccCCeeEecCCCCCC-c--cccccccccce-eecccCcccccc-hhhhcCCCCCEEe
Q 048566 352 KLRVLDFTRMQFSSFPS-SIDLLVNLHTLCLDQSALGD-I--AIIGKLKNLEV-LSFLMSDIMQLP-EELGQLNKLRLLD 425 (760)
Q Consensus 352 ~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~-~--~~~~~l~~L~~-L~l~~~~i~~lp-~~~~~l~~L~~L~ 425 (760)
+++.|+|++|.++.+|. .+.++++|++|+|++|.+.. + ..+.++.+|+. +.+..+++..+| ..+..+++|++|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 34445555555544443 34445555555555554322 1 22344444432 233334444443 2344455555555
Q ss_pred ccccccccccCcccccCCCCCCEEEccc
Q 048566 426 LTNCFHLKVIAPNLISSLTRLEELYMGN 453 (760)
Q Consensus 426 l~~~~~l~~~~~~~i~~l~~L~~L~l~~ 453 (760)
+++| .+..+++.......++..|++.+
T Consensus 111 l~~n-~l~~~~~~~~~~~~~l~~l~l~~ 137 (350)
T 4ay9_X 111 ISNT-GIKHLPDVHKIHSLQKVLLDIQD 137 (350)
T ss_dssp EEEE-CCSSCCCCTTCCBSSCEEEEEES
T ss_pred cccc-ccccCCchhhcccchhhhhhhcc
Confidence 5544 34444443333334444444433
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.44 E-value=3.3e-13 Score=135.41 Aligned_cols=155 Identities=18% Similarity=0.201 Sum_probs=97.9
Q ss_pred CCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCCcccccc
Q 048566 315 RHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGDIAIIGK 394 (760)
Q Consensus 315 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~~~~~~~ 394 (760)
..++...++++|+.|++++ +.+. .++ .+..+++|++|++++|.+..++. ++.+++|++|++++|.+..++.+..
T Consensus 32 ~~~~~~~~l~~L~~L~l~~--n~i~-~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~ 105 (263)
T 1xeu_A 32 TDLVSQKELSGVQNFNGDN--SNIQ-SLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS 105 (263)
T ss_dssp TSEECHHHHTTCSEEECTT--SCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC
T ss_pred ccccchhhcCcCcEEECcC--CCcc-cch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc
Confidence 3444444566777777763 3343 344 24667777777777777776665 6777777777777777666444444
Q ss_pred ccccceeecccCcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhh
Q 048566 395 LKNLEVLSFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDE 474 (760)
Q Consensus 395 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 474 (760)
.+|++|++++|.+..++ .+.++++|++|++++| .++.++. ++.+++|++|++++|.+.. ...
T Consensus 106 -~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~L~~L~L~~N~i~~-------------~~~ 167 (263)
T 1xeu_A 106 -ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIVM--LGFLSKLEVLDLHGNEITN-------------TGG 167 (263)
T ss_dssp -SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCGG--GGGCTTCCEEECTTSCCCB-------------CTT
T ss_pred -CcccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCChH--HccCCCCCEEECCCCcCcc-------------hHH
Confidence 67777777777776665 4667777777777776 5666542 6677777777777776541 144
Q ss_pred hcCCCCCCEEEEEeccCCC
Q 048566 475 LMHLPRLTTLEIDVKNDSI 493 (760)
Q Consensus 475 l~~l~~L~~L~l~~~~~~~ 493 (760)
+..+++|+.|+++++....
T Consensus 168 l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp STTCCCCCEEEEEEEEEEC
T ss_pred hccCCCCCEEeCCCCcccC
Confidence 5566667777766665433
No 104
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=5.2e-13 Score=124.23 Aligned_cols=139 Identities=24% Similarity=0.231 Sum_probs=110.1
Q ss_pred CCCCceEEEecCCCCC--CChhhhhhhccCCeeEecCCCCCCccccccccccceeecccCcccc-cchhhhcCCCCCEEe
Q 048566 349 GMKKLRVLDFTRMQFS--SFPSSIDLLVNLHTLCLDQSALGDIAIIGKLKNLEVLSFLMSDIMQ-LPEELGQLNKLRLLD 425 (760)
Q Consensus 349 ~l~~Lr~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~ 425 (760)
..++|++|++++|.+. .+|..+..+++|++|++++|.+..+..++.+++|++|++++|.+.. +|..+.++++|++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 4477899999999888 8888888899999999999988777778889999999999998887 777777899999999
Q ss_pred ccccccccccCc-ccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEeccCCCCCc
Q 048566 426 LTNCFHLKVIAP-NLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDSILPE 496 (760)
Q Consensus 426 l~~~~~l~~~~~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 496 (760)
+++| .+..++. ..++.+++|++|++++|.+....+ .....+..+++|+.|+++.+.....|.
T Consensus 102 Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~--------~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 102 LSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLND--------YRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT--------HHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred ccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHH--------HHHHHHHhCccCcEecCCCCChhhccc
Confidence 9998 6777653 458889999999999887652110 001367788889988888887666554
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.43 E-value=7e-13 Score=129.16 Aligned_cols=129 Identities=16% Similarity=0.273 Sum_probs=65.1
Q ss_pred CccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChh-hhhhhccCCeeEecCCCCCC-c-ccccccccccee
Q 048566 325 NLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPS-SIDLLVNLHTLCLDQSALGD-I-AIIGKLKNLEVL 401 (760)
Q Consensus 325 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L 401 (760)
.++.|+++ ++.+.+..+..+|..+++|++|++++|.+..++. .+..+++|++|++++|.+.. + ..++++.+|++|
T Consensus 33 ~~~~L~L~--~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 33 YTAELRLN--NNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp TCSEEECC--SSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred CCCEEEcC--CCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 34555555 3333322233444555555555555555554432 45555555555555555544 2 235555555555
Q ss_pred ecccCccccc-chhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEcccccc
Q 048566 402 SFLMSDIMQL-PEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFI 456 (760)
Q Consensus 402 ~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~ 456 (760)
++++|.+..+ |..+..+++|++|++++| .+..+++..+..+++|++|++++|.+
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCC
Confidence 5555555544 334555555555555554 44554444455555555555555544
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.43 E-value=5.2e-13 Score=133.96 Aligned_cols=151 Identities=18% Similarity=0.155 Sum_probs=118.6
Q ss_pred hcCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCCccccccccccceeecccCcccccchhhhcCCCCCEEec
Q 048566 347 FIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGDIAIIGKLKNLEVLSFLMSDIMQLPEELGQLNKLRLLDL 426 (760)
Q Consensus 347 ~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l 426 (760)
+..+++|++|+++++.+..+| .++.+++|++|++++|.+..++.++++++|++|++++|.+..+|... . ++|++|++
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~-~-~~L~~L~L 113 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIP-S-ACLSRLFL 113 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTCC-C-SSCCEEEC
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCccc-c-CcccEEEc
Confidence 567888888888888888887 68888888888888888887444888888888888888888877533 3 88888888
Q ss_pred cccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEeccCCCCCcchhcccccee
Q 048566 427 TNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDSILPEGFLARKLERF 506 (760)
Q Consensus 427 ~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L 506 (760)
++| .+..++. ++++++|++|++++|.+.. +..++.+++|+.|+++++.....+....+++|+.|
T Consensus 114 ~~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~~-------------~~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L 177 (263)
T 1xeu_A 114 DNN-ELRDTDS--LIHLKNLEILSIRNNKLKS-------------IVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWI 177 (263)
T ss_dssp CSS-CCSBSGG--GTTCTTCCEEECTTSCCCB-------------CGGGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEE
T ss_pred cCC-ccCCChh--hcCcccccEEECCCCcCCC-------------ChHHccCCCCCEEECCCCcCcchHHhccCCCCCEE
Confidence 887 6777653 7888888888888887641 23577788888888888887776555566888888
Q ss_pred EEEecCCCCC
Q 048566 507 KISIGNESFM 516 (760)
Q Consensus 507 ~l~~~~~~~l 516 (760)
+++.|.+...
T Consensus 178 ~l~~N~~~~~ 187 (263)
T 1xeu_A 178 DLTGQKCVNE 187 (263)
T ss_dssp EEEEEEEECC
T ss_pred eCCCCcccCC
Confidence 8888875544
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.43 E-value=8.3e-13 Score=128.63 Aligned_cols=137 Identities=23% Similarity=0.360 Sum_probs=77.8
Q ss_pred CCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCC-hhhhhhhccCCeeEecCCCCCC-cc-c
Q 048566 315 RHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSF-PSSIDLLVNLHTLCLDQSALGD-IA-I 391 (760)
Q Consensus 315 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~-~~-~ 391 (760)
..+|.... ++++.|+++ ++.+. .++...|..+++|++|++++|.+..+ |..+..+++|++|++++|.+.. ++ .
T Consensus 24 ~~iP~~l~-~~l~~L~l~--~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 99 (220)
T 2v9t_B 24 TEIPTNLP-ETITEIRLE--QNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99 (220)
T ss_dssp SSCCSSCC-TTCCEEECC--SSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTT
T ss_pred CcCCCccC-cCCCEEECC--CCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhH
Confidence 44444322 456666665 33443 34444556666666666666666544 5556666666666666666655 22 2
Q ss_pred cccccccceeecccCcccccc-hhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEcccccc
Q 048566 392 IGKLKNLEVLSFLMSDIMQLP-EELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFI 456 (760)
Q Consensus 392 ~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~ 456 (760)
+..+.+|++|++++|.+..++ ..+..+++|++|++++| .+..+++..+..+++|++|++++|.+
T Consensus 100 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 100 FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 455666666666666666553 34556666666666665 45555555555666666666666554
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.42 E-value=1.7e-12 Score=125.48 Aligned_cols=154 Identities=21% Similarity=0.370 Sum_probs=122.9
Q ss_pred CCCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhh-hhhhccCCeeEecCCCCCC-c-c
Q 048566 314 NRHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSS-IDLLVNLHTLCLDQSALGD-I-A 390 (760)
Q Consensus 314 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~l~~-~-~ 390 (760)
...+|... .++++.|+++ ++.+. .++...|..+++|++|++++|.+..+|.. +..+++|++|++++|.+.. + .
T Consensus 19 l~~~p~~~-~~~l~~L~l~--~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 94 (208)
T 2o6s_A 19 RTSVPTGI-PAQTTYLDLE--TNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNG 94 (208)
T ss_dssp CSSCCSCC-CTTCSEEECC--SSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCCCCCC-CCCCcEEEcC--CCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHh
Confidence 34555433 4689999998 45555 47777788999999999999999988654 6889999999999999887 3 3
Q ss_pred ccccccccceeecccCcccccchh-hhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccC
Q 048566 391 IIGKLKNLEVLSFLMSDIMQLPEE-LGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSN 469 (760)
Q Consensus 391 ~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 469 (760)
.++++.+|++|++++|.+..+|.. +.++++|++|++++| .+..+++..+.++++|++|++++|.+.
T Consensus 95 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~------------ 161 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWD------------ 161 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC------------
T ss_pred HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCee------------
Confidence 478999999999999999988765 688999999999998 788888877889999999999998664
Q ss_pred CChhhhcCCCCCCEEEEEecc
Q 048566 470 ASLDELMHLPRLTTLEIDVKN 490 (760)
Q Consensus 470 ~~~~~l~~l~~L~~L~l~~~~ 490 (760)
+.+++|+.|.++.+.
T Consensus 162 ------~~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 162 ------CTCPGIRYLSEWINK 176 (208)
T ss_dssp ------CCTTTTHHHHHHHHH
T ss_pred ------cCCCCHHHHHHHHHh
Confidence 234567777666554
No 109
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.40 E-value=1.7e-13 Score=143.48 Aligned_cols=196 Identities=16% Similarity=0.227 Sum_probs=131.9
Q ss_pred ccceEEEeecC-CCCCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCC-CChhhhhhhccCCee
Q 048566 302 RKCKAITLRYD-SNRHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFS-SFPSSIDLLVNLHTL 379 (760)
Q Consensus 302 ~~~r~l~l~~~-~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~l~~L~~L 379 (760)
+.++.+.+..+ .....+...++++|+.|++++ +.+.+......+..+++|++|++++|.+. ..|..++.+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~--~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSN--SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTT--CEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccC--CCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 34555555522 223334455788888888884 33432212345678888889998888877 567778888888999
Q ss_pred EecCC-CCCC---ccccccccccceeecccC-cccc--cchhhhcCC-CCCEEeccccc-cc--cccCcccccCCCCCCE
Q 048566 380 CLDQS-ALGD---IAIIGKLKNLEVLSFLMS-DIMQ--LPEELGQLN-KLRLLDLTNCF-HL--KVIAPNLISSLTRLEE 448 (760)
Q Consensus 380 ~l~~~-~l~~---~~~~~~l~~L~~L~l~~~-~i~~--lp~~~~~l~-~L~~L~l~~~~-~l--~~~~~~~i~~l~~L~~ 448 (760)
++++| .+.. +..+.++++|++|++++| .+.. ++..+..++ +|++|++++|. .+ ..++. .+.++++|++
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~ 226 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST-LVRRCPNLVH 226 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH-HHHHCTTCSE
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH-HHhhCCCCCE
Confidence 88888 5664 344778888888888888 7774 677788888 88888888874 23 22333 3677888888
Q ss_pred EEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEeccCCCCCc----chhccccceeEEEec
Q 048566 449 LYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDSILPE----GFLARKLERFKISIG 511 (760)
Q Consensus 449 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~~L~~L~l~~~ 511 (760)
|++++|... ....+..+..+++|+.|+++++.. ..+. ...+++|+.|+++++
T Consensus 227 L~l~~~~~l----------~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 227 LDLSDSVML----------KNDCFQEFFQLNYLQHLSLSRCYD-IIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp EECTTCTTC----------CGGGGGGGGGCTTCCEEECTTCTT-CCGGGGGGGGGCTTCCEEECTTS
T ss_pred EeCCCCCcC----------CHHHHHHHhCCCCCCEeeCCCCCC-CCHHHHHHHhcCCCCCEEeccCc
Confidence 888888732 112345677788888888887752 1121 223467777777644
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.39 E-value=1.3e-12 Score=127.34 Aligned_cols=145 Identities=16% Similarity=0.252 Sum_probs=99.6
Q ss_pred EEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChh-hhhhhccCCeeEecCCCCCC--ccccccccccceeecc
Q 048566 328 FLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPS-SIDLLVNLHTLCLDQSALGD--IAIIGKLKNLEVLSFL 404 (760)
Q Consensus 328 ~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~ 404 (760)
.+++. ++.+. .+|..+. ++|+.|+++++.+..++. .+..+++|++|++++|.+.. +..+.++.+|++|+++
T Consensus 15 ~v~c~--~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 15 IVDCR--GKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp EEECT--TSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred EEEcC--CCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 44444 33343 4665442 567888888888776654 67777888888888888766 4567778888888888
Q ss_pred cCcccccchh-hhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCE
Q 048566 405 MSDIMQLPEE-LGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTT 483 (760)
Q Consensus 405 ~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 483 (760)
+|.+..+|.. +..+++|++|++++| .+..+++..+..+++|++|++++|.+.. .....+..+++|+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------~~~~~~~~l~~L~~ 156 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQT-----------IAKGTFSPLRAIQT 156 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC-----------CCTTTTTTCTTCCE
T ss_pred CCcCCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCE-----------ECHHHHhCCCCCCE
Confidence 8888777765 467788888888877 6777766667778888888887776641 11234666777777
Q ss_pred EEEEecc
Q 048566 484 LEIDVKN 490 (760)
Q Consensus 484 L~l~~~~ 490 (760)
|++++|.
T Consensus 157 L~L~~N~ 163 (220)
T 2v9t_B 157 MHLAQNP 163 (220)
T ss_dssp EECCSSC
T ss_pred EEeCCCC
Confidence 7776554
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.36 E-value=3.4e-12 Score=124.24 Aligned_cols=146 Identities=14% Similarity=0.187 Sum_probs=110.2
Q ss_pred cEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCCh--hhhhhhccCCeeEecCCCCCC-c-cccccccccceee
Q 048566 327 EFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFP--SSIDLLVNLHTLCLDQSALGD-I-AIIGKLKNLEVLS 402 (760)
Q Consensus 327 r~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp--~~i~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~ 402 (760)
++++++ .+.+. .+|..+ ...+++|++++|.+..++ ..+..+++|++|++++|.+.. + ..++++.+|++|+
T Consensus 14 ~~l~~s--~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 14 TTVDCS--NQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87 (220)
T ss_dssp TEEECC--SSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CEeEeC--CCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence 456665 44444 466544 235688999999888763 347888899999999998877 3 4688889999999
Q ss_pred cccCcccccchh-hhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCC
Q 048566 403 FLMSDIMQLPEE-LGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRL 481 (760)
Q Consensus 403 l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 481 (760)
+++|.+..+|.. +..+++|++|++++| .+..+++..+..+++|++|++++|.+.. ..+..+..+++|
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------~~~~~~~~l~~L 155 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITT-----------VAPGAFDTLHSL 155 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCC-----------BCTTTTTTCTTC
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCE-----------ECHHHhcCCCCC
Confidence 999988877654 788899999999887 6777777778888999999998887652 224567778888
Q ss_pred CEEEEEecc
Q 048566 482 TTLEIDVKN 490 (760)
Q Consensus 482 ~~L~l~~~~ 490 (760)
+.|++++|.
T Consensus 156 ~~L~L~~N~ 164 (220)
T 2v70_A 156 STLNLLANP 164 (220)
T ss_dssp CEEECCSCC
T ss_pred CEEEecCcC
Confidence 888887665
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.35 E-value=7.1e-12 Score=138.75 Aligned_cols=181 Identities=18% Similarity=0.197 Sum_probs=128.2
Q ss_pred cceEEEeecCCCCCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeEec
Q 048566 303 KCKAITLRYDSNRHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLD 382 (760)
Q Consensus 303 ~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 382 (760)
+++.+.+.++....+|... +++|++|+++ ++.+. .+| ..+++|++|++++|.+..+|. ++. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls--~N~l~-~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEIT--QNALI-SLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECC--SSCCS-CCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECc--CCCCc-ccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 5667777755445666644 4788888888 45555 466 346788889999888888887 655 88889998
Q ss_pred CCCCCCccccccccccceeecccCcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhh
Q 048566 383 QSALGDIAIIGKLKNLEVLSFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVER 462 (760)
Q Consensus 383 ~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~ 462 (760)
+|.+..++. .+.+|++|++++|.+..+|. .+++|++|++++| .+..+|. +. ++|+.|++++|.+. .++.
T Consensus 129 ~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~L~~lp~--l~--~~L~~L~Ls~N~L~-~lp~ 197 (571)
T 3cvr_A 129 NNQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN-QLTFLPE--LP--ESLEALDVSTNLLE-SLPA 197 (571)
T ss_dssp SSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC--CC--TTCCEEECCSSCCS-SCCC
T ss_pred CCcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC-CCCCcch--hh--CCCCEEECcCCCCC-chhh
Confidence 888877444 67888889998888888886 5788888988887 6777776 44 88888888888765 2210
Q ss_pred ccccccCCChhhh-cCCCCCCEEEEEeccCCCCCcch-hccccceeEEEecCC
Q 048566 463 ANSKRSNASLDEL-MHLPRLTTLEIDVKNDSILPEGF-LARKLERFKISIGNE 513 (760)
Q Consensus 463 ~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~ 513 (760)
....+ ...+.|+.|++++|.+..+|... .+++|+.|+++.|.+
T Consensus 198 --------~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 198 --------VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp --------CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred --------HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcC
Confidence 01111 11223388888888888887754 457888888887764
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.35 E-value=5.4e-12 Score=139.72 Aligned_cols=176 Identities=19% Similarity=0.247 Sum_probs=137.1
Q ss_pred CCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCCccccccccccceeec
Q 048566 324 PNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGDIAIIGKLKNLEVLSF 403 (760)
Q Consensus 324 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l 403 (760)
.+++.|+++ ++.+. .+|..++ ++|++|++++|.+..+| +.+++|++|++++|.+..++.+++ +|++|++
T Consensus 59 ~~L~~L~Ls--~n~L~-~lp~~l~---~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLN--RLNLS-SLPDNLP---PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECC--SSCCS-CCCSCCC---TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEEC
T ss_pred CCccEEEeC--CCCCC-ccCHhHc---CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEEC
Confidence 378999998 45565 3887663 78999999999999999 568999999999999988444665 9999999
Q ss_pred ccCcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCE
Q 048566 404 LMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTT 483 (760)
Q Consensus 404 ~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 483 (760)
++|.+..+|. .+++|+.|++++| .+..+|. .+++|++|++++|.+.. + +. +. ++|+.
T Consensus 128 s~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~L~~-l-----------p~-l~--~~L~~ 184 (571)
T 3cvr_A 128 DNNQLTMLPE---LPALLEYINADNN-QLTMLPE----LPTSLEVLSVRNNQLTF-L-----------PE-LP--ESLEA 184 (571)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSC-C-----------CC-CC--TTCCE
T ss_pred CCCcCCCCCC---cCccccEEeCCCC-ccCcCCC----cCCCcCEEECCCCCCCC-c-----------ch-hh--CCCCE
Confidence 9999999987 6899999999998 6777775 57899999999998752 1 22 33 79999
Q ss_pred EEEEeccCCCCCcchhcccc-------ceeEEEecCCCCCCCccccccccCCCCcccccccccccceeeeccCc
Q 048566 484 LEIDVKNDSILPEGFLARKL-------ERFKISIGNESFMPPKCVRQDWFQSQPHFSINSDRKSLRALKLKLDF 550 (760)
Q Consensus 484 L~l~~~~~~~~~~~~~~~~L-------~~L~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 550 (760)
|++++|.+..+|. ...+| +.|+++.|.+..+|... ...++++.|+++.+.
T Consensus 185 L~Ls~N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l---------------~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 185 LDVSTNLLESLPA--VPVRNHHSEETEIFFRCRENRITHIPENI---------------LSLDPTCTIILEDNP 241 (571)
T ss_dssp EECCSSCCSSCCC--CC--------CCEEEECCSSCCCCCCGGG---------------GGSCTTEEEECCSSS
T ss_pred EECcCCCCCchhh--HHHhhhcccccceEEecCCCcceecCHHH---------------hcCCCCCEEEeeCCc
Confidence 9999999888887 23477 99999999877665321 134566677766655
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.35 E-value=4.1e-12 Score=124.60 Aligned_cols=147 Identities=20% Similarity=0.254 Sum_probs=104.1
Q ss_pred ccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCC-hhhhhhhccCCeeEecCCCCCC-c-cccccccccceee
Q 048566 326 LEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSF-PSSIDLLVNLHTLCLDQSALGD-I-AIIGKLKNLEVLS 402 (760)
Q Consensus 326 Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~ 402 (760)
.+.++++ .+.+. .+|..+ .++|++|++++|.+..+ |..+..+++|++|++++|.+.. + ..+..+.+|++|+
T Consensus 21 ~~~v~c~--~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 21 GTTVDCR--SKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp TTEEECT--TSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEeEcc--CCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence 3455555 33343 466544 36788888888888866 5677888888888888888876 3 3467888888888
Q ss_pred cccCcccccchh-hhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCC
Q 048566 403 FLMSDIMQLPEE-LGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRL 481 (760)
Q Consensus 403 l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 481 (760)
+++|.+..+|.. +..+++|++|++++| .+..+|.. +..+++|++|++++|.+.. .....+..+++|
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~-----------~~~~~~~~l~~L 161 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLKS-----------IPHGAFDRLSSL 161 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCCC-----------CCTTTTTTCTTC
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCCc-----------cCHHHHhCCCCC
Confidence 888888877754 577888888888887 67777665 6788888888888876641 112446667777
Q ss_pred CEEEEEeccC
Q 048566 482 TTLEIDVKND 491 (760)
Q Consensus 482 ~~L~l~~~~~ 491 (760)
+.|++.+|..
T Consensus 162 ~~L~l~~N~~ 171 (229)
T 3e6j_A 162 THAYLFGNPW 171 (229)
T ss_dssp CEEECTTSCB
T ss_pred CEEEeeCCCc
Confidence 7777776653
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.33 E-value=2.9e-12 Score=119.16 Aligned_cols=130 Identities=22% Similarity=0.234 Sum_probs=95.0
Q ss_pred CCCccEEEeeccCCccc-ccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCC-c-cccccccccc
Q 048566 323 CPNLEFLCISLKDSSLE-INIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGD-I-AIIGKLKNLE 399 (760)
Q Consensus 323 ~~~Lr~L~l~~~~~~~~-~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~ 399 (760)
.++|+.|++++ +.+. +.+|.. +..+++|++|++++|.+..+ ..++.+++|++|++++|.+.. + ..++++++|+
T Consensus 23 ~~~L~~L~l~~--n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDN--CKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCS--CBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred cccCCEEECCC--CCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 36677777773 3343 345544 47778888888888888777 677778888888888888766 4 3455588888
Q ss_pred eeecccCcccccc--hhhhcCCCCCEEeccccccccccCc---ccccCCCCCCEEEccccccc
Q 048566 400 VLSFLMSDIMQLP--EELGQLNKLRLLDLTNCFHLKVIAP---NLISSLTRLEELYMGNCFIE 457 (760)
Q Consensus 400 ~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~~l~~~~~---~~i~~l~~L~~L~l~~~~~~ 457 (760)
+|++++|.+..+| ..+..+++|++|++++| .+...++ ..+..+++|++|++++|...
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 8888888888766 57778888888888887 6677766 45778888888888877653
No 116
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.33 E-value=1.6e-12 Score=118.19 Aligned_cols=129 Identities=20% Similarity=0.188 Sum_probs=85.5
Q ss_pred CCCceEEEecCCCCC--CChhhhhhhccCCeeEecCCCCCCccccccccccceeecccCcccc-cchhhhcCCCCCEEec
Q 048566 350 MKKLRVLDFTRMQFS--SFPSSIDLLVNLHTLCLDQSALGDIAIIGKLKNLEVLSFLMSDIMQ-LPEELGQLNKLRLLDL 426 (760)
Q Consensus 350 l~~Lr~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l 426 (760)
.++|+.|++++|.+. .+|..++.+++|++|++++|.+..++.++++++|++|++++|.+.. +|..++++++|++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 356777777777776 6677677777777777777777666667777777777777777776 6666666777777777
Q ss_pred cccccccccC-cccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCEEEEE
Q 048566 427 TNCFHLKVIA-PNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEID 487 (760)
Q Consensus 427 ~~~~~l~~~~-~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 487 (760)
++| .+..++ +..++.+++|++|++++|.+....+ .....+..+++|+.|+++
T Consensus 96 s~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~--------~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGN-KIKDLSTIEPLKKLENLKSLDLFNCEVTNLND--------YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTS-CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT--------HHHHHHHHCTTCCEETTB
T ss_pred CCC-cCCChHHHHHHhhCCCCCEEeCcCCcccchHH--------HHHHHHHHCCCcccccCC
Confidence 776 466543 1346777777777777776541110 001346667777776553
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.32 E-value=4.1e-12 Score=134.03 Aligned_cols=103 Identities=26% Similarity=0.377 Sum_probs=49.8
Q ss_pred ceEEEecCCCCCCChhh-hh-hhccCCeeEecCCCCCC-c-cccccccccceeecccCcccccch-hhhcCCCCCEEecc
Q 048566 353 LRVLDFTRMQFSSFPSS-ID-LLVNLHTLCLDQSALGD-I-AIIGKLKNLEVLSFLMSDIMQLPE-ELGQLNKLRLLDLT 427 (760)
Q Consensus 353 Lr~L~l~~~~~~~lp~~-i~-~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~ 427 (760)
+++|+|++|.+..++.. +. .+.+|++|++++|.+.. + ..+.++.+|++|++++|.+..+|. .+..+++|++|+++
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 44555555555444322 22 44555555555555444 1 234555555555555555554443 24455555555555
Q ss_pred ccccccccCcccccCCCCCCEEEcccccc
Q 048566 428 NCFHLKVIAPNLISSLTRLEELYMGNCFI 456 (760)
Q Consensus 428 ~~~~l~~~~~~~i~~l~~L~~L~l~~~~~ 456 (760)
+| .+..+++..+..+++|++|++++|.+
T Consensus 121 ~N-~i~~~~~~~~~~l~~L~~L~L~~N~l 148 (361)
T 2xot_A 121 NN-HIVVVDRNAFEDMAQLQKLYLSQNQI 148 (361)
T ss_dssp SS-CCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CC-cccEECHHHhCCcccCCEEECCCCcC
Confidence 54 34444444455555555555555544
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.32 E-value=5.7e-12 Score=121.71 Aligned_cols=152 Identities=19% Similarity=0.275 Sum_probs=120.6
Q ss_pred cCCchhhcCCCCceEEEecCCCCCCChh-hhhhhccCCeeEecCCCCCC-c-cccccccccceeecccCcccccchh-hh
Q 048566 341 NIPGNFFIGMKKLRVLDFTRMQFSSFPS-SIDLLVNLHTLCLDQSALGD-I-AIIGKLKNLEVLSFLMSDIMQLPEE-LG 416 (760)
Q Consensus 341 ~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~-~~ 416 (760)
.+|..+ .++|++|+++++.+..++. .++.+++|++|++++|.+.. + ..+.++.+|++|++++|.+..+|.. +.
T Consensus 21 ~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 97 (208)
T 2o6s_A 21 SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFD 97 (208)
T ss_dssp SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhc
Confidence 366543 4589999999999998865 46899999999999999887 3 3478999999999999999988865 68
Q ss_pred cCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEeccCCCCCc
Q 048566 417 QLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDSILPE 496 (760)
Q Consensus 417 ~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 496 (760)
.+++|++|++++| .+..+++..+.++++|++|++++|.+.. .....+..+++|+.|+++++....
T Consensus 98 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~-----------~~~~~~~~l~~L~~L~l~~N~~~~--- 162 (208)
T 2o6s_A 98 KLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKS-----------VPDGVFDRLTSLQYIWLHDNPWDC--- 162 (208)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC-----------CCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred CccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccce-----------eCHHHhccCCCccEEEecCCCeec---
Confidence 9999999999998 7888888778899999999999997641 123447788999999998875321
Q ss_pred chhccccceeEEEecC
Q 048566 497 GFLARKLERFKISIGN 512 (760)
Q Consensus 497 ~~~~~~L~~L~l~~~~ 512 (760)
..++|+.|+++.+.
T Consensus 163 --~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 163 --TCPGIRYLSEWINK 176 (208)
T ss_dssp --CTTTTHHHHHHHHH
T ss_pred --CCCCHHHHHHHHHh
Confidence 23566666666554
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.31 E-value=4.2e-12 Score=119.00 Aligned_cols=134 Identities=17% Similarity=0.219 Sum_probs=94.4
Q ss_pred hcCCCCceEEEecCCCCCCChhhhhhhc-cCCeeEecCCCCCCccccccccccceeecccCcccccchhh-hcCCCCCEE
Q 048566 347 FIGMKKLRVLDFTRMQFSSFPSSIDLLV-NLHTLCLDQSALGDIAIIGKLKNLEVLSFLMSDIMQLPEEL-GQLNKLRLL 424 (760)
Q Consensus 347 ~~~l~~Lr~L~l~~~~~~~lp~~i~~l~-~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L 424 (760)
|..+.+|+.|++++|.+..+|. +..+. +|++|++++|.+..++.++.+++|++|++++|.+..+|..+ +.+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 3567778888888888877754 44444 88888888888777677778888888888888888777554 778888888
Q ss_pred eccccccccccCc-ccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEecc
Q 048566 425 DLTNCFHLKVIAP-NLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKN 490 (760)
Q Consensus 425 ~l~~~~~l~~~~~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 490 (760)
++++| .+..+|. ..++.+++|++|++++|.+.. ++ ......+..+++|+.|+++.+.
T Consensus 94 ~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~-------~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 94 ILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTN-KK-------HYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGG-ST-------THHHHHHHHCTTCSEETTEECC
T ss_pred ECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCC-cH-------hHHHHHHHHCCccceeCCCcCC
Confidence 88887 5666665 247778888888888877641 10 0001136677777777777654
No 120
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.31 E-value=6.6e-13 Score=140.36 Aligned_cols=128 Identities=14% Similarity=0.204 Sum_probs=64.9
Q ss_pred ccEEEeeccCCcccccCCc----hhhcCCC-CceEEEecCCCCCCC-hhhhhhh-----ccCCeeEecCCCCCC--ccc-
Q 048566 326 LEFLCISLKDSSLEINIPG----NFFIGMK-KLRVLDFTRMQFSSF-PSSIDLL-----VNLHTLCLDQSALGD--IAI- 391 (760)
Q Consensus 326 Lr~L~l~~~~~~~~~~~~~----~~~~~l~-~Lr~L~l~~~~~~~l-p~~i~~l-----~~L~~L~l~~~~l~~--~~~- 391 (760)
|+.|+++ ++.+. ..+. ..|..++ +|++|++++|.+... +..+..+ ++|++|++++|.+.. +..
T Consensus 24 L~~L~Ls--~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 24 VTSLDLS--LNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CCEEECT--TSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred ceEEEcc--CCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 6666666 33333 2332 3445555 566666666666533 4445554 666666666666543 222
Q ss_pred ---cccc-cccceeecccCcccccch-h----hhc-CCCCCEEeccccccccccCcc----cccCCC-CCCEEEcccccc
Q 048566 392 ---IGKL-KNLEVLSFLMSDIMQLPE-E----LGQ-LNKLRLLDLTNCFHLKVIAPN----LISSLT-RLEELYMGNCFI 456 (760)
Q Consensus 392 ---~~~l-~~L~~L~l~~~~i~~lp~-~----~~~-l~~L~~L~l~~~~~l~~~~~~----~i~~l~-~L~~L~l~~~~~ 456 (760)
+..+ .+|++|++++|.+...+. . +.. .++|++|++++| .+...... .+..++ +|++|++++|.+
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence 2223 566666666666554432 2 222 246666666665 34422211 123333 666666666655
Q ss_pred c
Q 048566 457 E 457 (760)
Q Consensus 457 ~ 457 (760)
.
T Consensus 180 ~ 180 (362)
T 3goz_A 180 A 180 (362)
T ss_dssp G
T ss_pred c
Confidence 3
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.31 E-value=2.9e-12 Score=116.50 Aligned_cols=124 Identities=23% Similarity=0.312 Sum_probs=82.5
Q ss_pred CCccEEEeeccCCccc-ccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCC-c-cccccccccce
Q 048566 324 PNLEFLCISLKDSSLE-INIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGD-I-AIIGKLKNLEV 400 (760)
Q Consensus 324 ~~Lr~L~l~~~~~~~~-~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~ 400 (760)
++++.|++++ +.+. +.+|. .+..+++|++|++++|.+..+ ..++.+++|++|++++|.+.. + ..++++++|++
T Consensus 17 ~~l~~L~l~~--n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDN--SRSNEGKLEG-LTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTT--CBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccC--CcCChhHHHH-HHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 4566666663 3333 23554 346777777777777777766 566777777777777777665 3 34455777777
Q ss_pred eecccCcccccc--hhhhcCCCCCEEeccccccccccCc---ccccCCCCCCEEEcc
Q 048566 401 LSFLMSDIMQLP--EELGQLNKLRLLDLTNCFHLKVIAP---NLISSLTRLEELYMG 452 (760)
Q Consensus 401 L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~~l~~~~~---~~i~~l~~L~~L~l~ 452 (760)
|++++|.+..+| ..++.+++|++|++++| .+...++ ..++.+++|++|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 777777777654 56777777777777776 5666665 446777777777654
No 122
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.30 E-value=4.7e-13 Score=142.94 Aligned_cols=132 Identities=20% Similarity=0.232 Sum_probs=65.0
Q ss_pred CCCCccEEEeeccCCcccccCCc---hhhcCCCCceEEEecCCCCC----CChhhh-------hhhccCCeeEecCCCCC
Q 048566 322 ECPNLEFLCISLKDSSLEINIPG---NFFIGMKKLRVLDFTRMQFS----SFPSSI-------DLLVNLHTLCLDQSALG 387 (760)
Q Consensus 322 ~~~~Lr~L~l~~~~~~~~~~~~~---~~~~~l~~Lr~L~l~~~~~~----~lp~~i-------~~l~~L~~L~l~~~~l~ 387 (760)
.+++|+.|++++ +.+....+. ..+..+++|++|+++++.+. .+|..+ ..+++|++|++++|.+.
T Consensus 30 ~~~~L~~L~L~~--n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 30 EDDSVKEIVLSG--NTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HCSCCCEEECTT--SEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred cCCCccEEECCC--CCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 455666666662 333211111 12345666666666665443 223333 45566666666666654
Q ss_pred C------ccccccccccceeecccCccc-----ccchhhhcC---------CCCCEEecccccccc--ccCc--ccccCC
Q 048566 388 D------IAIIGKLKNLEVLSFLMSDIM-----QLPEELGQL---------NKLRLLDLTNCFHLK--VIAP--NLISSL 443 (760)
Q Consensus 388 ~------~~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l---------~~L~~L~l~~~~~l~--~~~~--~~i~~l 443 (760)
. +..+.++++|++|++++|.+. .++..+..+ ++|++|++++| .+. .++. ..+..+
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSH 186 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHHHhC
Confidence 3 234555666666666666554 222233333 56666666665 332 1221 124455
Q ss_pred CCCCEEEcccccc
Q 048566 444 TRLEELYMGNCFI 456 (760)
Q Consensus 444 ~~L~~L~l~~~~~ 456 (760)
++|++|++++|.+
T Consensus 187 ~~L~~L~L~~n~l 199 (386)
T 2ca6_A 187 RLLHTVKMVQNGI 199 (386)
T ss_dssp TTCCEEECCSSCC
T ss_pred CCcCEEECcCCCC
Confidence 6666666666554
No 123
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.30 E-value=1e-12 Score=140.32 Aligned_cols=204 Identities=16% Similarity=0.131 Sum_probs=143.1
Q ss_pred cccceEEEeecCCCCC-----CCC-CCCCCCccEEEeeccC-CcccccCCchh------hcCCCCceEEEecCCCCCC--
Q 048566 301 LRKCKAITLRYDSNRH-----FPE-GLECPNLEFLCISLKD-SSLEINIPGNF------FIGMKKLRVLDFTRMQFSS-- 365 (760)
Q Consensus 301 ~~~~r~l~l~~~~~~~-----~~~-~~~~~~Lr~L~l~~~~-~~~~~~~~~~~------~~~l~~Lr~L~l~~~~~~~-- 365 (760)
.+.++.+.+.++.... +.. ...+++|++|+++.+. +.+.+.+|..+ +..+++|++|++++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 3457777776332222 111 3368899999998532 33333455444 4788999999999999885
Q ss_pred ---ChhhhhhhccCCeeEecCCCCCC--ccc----cccc---------cccceeecccCccc--ccc---hhhhcCCCCC
Q 048566 366 ---FPSSIDLLVNLHTLCLDQSALGD--IAI----IGKL---------KNLEVLSFLMSDIM--QLP---EELGQLNKLR 422 (760)
Q Consensus 366 ---lp~~i~~l~~L~~L~l~~~~l~~--~~~----~~~l---------~~L~~L~l~~~~i~--~lp---~~~~~l~~L~ 422 (760)
+|..+..+++|++|++++|.+.. +.. +..+ ++|++|++++|++. .+| ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 68889999999999999999864 223 3344 89999999999886 444 4677899999
Q ss_pred EEeccccccccc-----cCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEeccCCCC---
Q 048566 423 LLDLTNCFHLKV-----IAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDSIL--- 494 (760)
Q Consensus 423 ~L~l~~~~~l~~-----~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--- 494 (760)
+|++++| .+.. +.+..+.++++|++|++++|.+...- ....+..+..+++|+.|++++|.....
T Consensus 191 ~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g-------~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 191 TVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-------SSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp EEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-------HHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred EEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH-------HHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 9999998 5552 22324788999999999999874110 112245678899999999998875433
Q ss_pred --Ccch---hccccceeEEEecC
Q 048566 495 --PEGF---LARKLERFKISIGN 512 (760)
Q Consensus 495 --~~~~---~~~~L~~L~l~~~~ 512 (760)
+... ..++|+.|+++.|.
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSC
T ss_pred HHHHHHhhccCCCeEEEECcCCc
Confidence 2221 15778888887776
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.29 E-value=6.2e-12 Score=132.69 Aligned_cols=171 Identities=18% Similarity=0.234 Sum_probs=131.0
Q ss_pred EEEeecCCCCCCCCCCCCCCccEEEeeccCCcccccCCchhhc-CCCCceEEEecCCCCCCCh-hhhhhhccCCeeEecC
Q 048566 306 AITLRYDSNRHFPEGLECPNLEFLCISLKDSSLEINIPGNFFI-GMKKLRVLDFTRMQFSSFP-SSIDLLVNLHTLCLDQ 383 (760)
Q Consensus 306 ~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~-~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~ 383 (760)
.+....+....+|..+ .+.++.|+++ ++.+. .++...|. ++++|++|++++|.+..++ ..+..+++|++|+|++
T Consensus 22 ~l~c~~~~l~~iP~~~-~~~l~~L~Ls--~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSL-PSYTALLDLS--HNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp EEECCSSCCSSCCSSC-CTTCSEEECC--SSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEEeCCCCcCccCccC-CCCCCEEECC--CCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 4444444456666543 3468899998 55665 46666676 8999999999999998775 5689999999999999
Q ss_pred CCCCC-c-cccccccccceeecccCccccc-chhhhcCCCCCEEeccccccccccCcccc---cCCCCCCEEEccccccc
Q 048566 384 SALGD-I-AIIGKLKNLEVLSFLMSDIMQL-PEELGQLNKLRLLDLTNCFHLKVIAPNLI---SSLTRLEELYMGNCFIE 457 (760)
Q Consensus 384 ~~l~~-~-~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~i---~~l~~L~~L~l~~~~~~ 457 (760)
|.+.. + ..+.++.+|++|++++|.+..+ |..+..+++|++|++++| .+..+|...+ ..+++|++|++++|.+.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 99887 3 4588999999999999999877 467889999999999998 7888888755 67999999999998775
Q ss_pred hhhhhccccccCCChhhhcCCCC--CCEEEEEeccCC
Q 048566 458 WEVERANSKRSNASLDELMHLPR--LTTLEIDVKNDS 492 (760)
Q Consensus 458 ~~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~ 492 (760)
. .....+..++. |+.|++.+|...
T Consensus 177 ~-----------l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 K-----------LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp C-----------CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred c-----------cCHHHhhhccHhhcceEEecCCCcc
Confidence 1 22455666766 478888877643
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.27 E-value=2.1e-11 Score=115.84 Aligned_cols=124 Identities=19% Similarity=0.293 Sum_probs=98.9
Q ss_pred cEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCC--ccccccccccceeecc
Q 048566 327 EFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGD--IAIIGKLKNLEVLSFL 404 (760)
Q Consensus 327 r~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~ 404 (760)
++++++ .+.+. .+|..++ ++|++|++++|.+..+|..+..+.+|++|++++|.+.. +..+.++.+|++|+++
T Consensus 13 ~~l~~~--~~~l~-~ip~~~~---~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCS--NKGLK-VLPKGIP---RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECT--TSCCS-SCCSCCC---TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcC--CCCCC-cCCCCCC---CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 345554 34444 4666543 57889999999999888888999999999999999877 3458889999999999
Q ss_pred cCcccccch-hhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccc
Q 048566 405 MSDIMQLPE-ELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIE 457 (760)
Q Consensus 405 ~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~ 457 (760)
+|.+..+|. .+..+++|++|++++| .+..+++..+..+++|+.|++++|.+.
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCee
Confidence 998888765 5888899999999987 788888877888889999998888764
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.26 E-value=1.2e-11 Score=142.14 Aligned_cols=156 Identities=20% Similarity=0.205 Sum_probs=104.0
Q ss_pred ccceEEEeecCCCCCCCC-CCCCCCccEEEeec---cCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCC
Q 048566 302 RKCKAITLRYDSNRHFPE-GLECPNLEFLCISL---KDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLH 377 (760)
Q Consensus 302 ~~~r~l~l~~~~~~~~~~-~~~~~~Lr~L~l~~---~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~ 377 (760)
..++++.+..+.....+. ......|+.+.+.. ..+.+. ++...|..+..|++|+|++|.+..+|..+..+++|+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLT 250 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCS
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCC
Confidence 446667665333233332 22334444444332 123333 566778999999999999999999999999999999
Q ss_pred eeEecCCCCCC-ccccccccccceeecccCcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEcccccc
Q 048566 378 TLCLDQSALGD-IAIIGKLKNLEVLSFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFI 456 (760)
Q Consensus 378 ~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~ 456 (760)
+|+|++|.+.. |..+++|.+|++|+|++|.+..+|..+++|++|++|++++| .++.+|.. ++++++|++|++++|.+
T Consensus 251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSS-CCCCCCSS-TTSCTTCCCEECTTSCC
T ss_pred EEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCC-CCCccChh-hhcCCCccEEeCCCCcc
Confidence 99999999988 67899999999999999999999999999999999999998 78888877 99999999999999998
Q ss_pred chhhh
Q 048566 457 EWEVE 461 (760)
Q Consensus 457 ~~~~~ 461 (760)
.+.++
T Consensus 329 ~~~~p 333 (727)
T 4b8c_D 329 EKQFL 333 (727)
T ss_dssp CSHHH
T ss_pred CCCCh
Confidence 75543
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.25 E-value=1.9e-11 Score=116.15 Aligned_cols=105 Identities=16% Similarity=0.229 Sum_probs=63.6
Q ss_pred CceEEEecCCCCCCChhh--hhhhccCCeeEecCCCCCC--ccccccccccceeecccCcccccchh-hhcCCCCCEEec
Q 048566 352 KLRVLDFTRMQFSSFPSS--IDLLVNLHTLCLDQSALGD--IAIIGKLKNLEVLSFLMSDIMQLPEE-LGQLNKLRLLDL 426 (760)
Q Consensus 352 ~Lr~L~l~~~~~~~lp~~--i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l 426 (760)
+|++|+++++.+..++.. ++.+++|++|++++|.+.. +..++++.+|++|++++|++..++.. +.++++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 566666666666655542 5666666666666666655 34566666666666666666655433 556666666666
Q ss_pred cccccccccCcccccCCCCCCEEEccccccc
Q 048566 427 TNCFHLKVIAPNLISSLTRLEELYMGNCFIE 457 (760)
Q Consensus 427 ~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~ 457 (760)
++| .+..+++..+..+++|++|++++|.+.
T Consensus 110 ~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 110 YDN-QISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSS-CCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCC-cCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 665 455555544666666666666666543
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.23 E-value=1.8e-11 Score=116.38 Aligned_cols=124 Identities=22% Similarity=0.335 Sum_probs=106.8
Q ss_pred eEEEecCCCCCCChhhhhhhccCCeeEecCCCCCC-cc--ccccccccceeecccCccccc-chhhhcCCCCCEEecccc
Q 048566 354 RVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGD-IA--IIGKLKNLEVLSFLMSDIMQL-PEELGQLNKLRLLDLTNC 429 (760)
Q Consensus 354 r~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-~~--~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~ 429 (760)
++++++++.+..+|..+.. +|++|++++|.+.. ++ .++++++|++|++++|.+..+ |..+.++++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 7899999999999987654 99999999999988 43 389999999999999999987 678999999999999998
Q ss_pred ccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEeccC
Q 048566 430 FHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKND 491 (760)
Q Consensus 430 ~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 491 (760)
.+..+++..++.+++|++|++++|.+... .+..+..+++|+.|++++|..
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 89 -KIKEISNKMFLGLHQLKTLNLYDNQISCV-----------MPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp -CCCEECSSSSTTCTTCCEEECCSSCCCEE-----------CTTSSTTCTTCCEEECTTCCB
T ss_pred -cCCccCHHHhcCCCCCCEEECCCCcCCee-----------CHHHhhcCCCCCEEEeCCCCc
Confidence 78888888789999999999999987532 245677888999998887654
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.22 E-value=1.4e-11 Score=115.36 Aligned_cols=134 Identities=14% Similarity=0.156 Sum_probs=102.2
Q ss_pred CCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCC-ccc-cccc
Q 048566 318 PEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGD-IAI-IGKL 395 (760)
Q Consensus 318 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-~~~-~~~l 395 (760)
+...++++|+.|+++ ++.+. .++. +....++|++|++++|.+..+ ..++.+++|++|++++|.+.. ++. ++.+
T Consensus 13 ~~~~~~~~L~~L~l~--~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 13 AQYTNAVRDRELDLR--GYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQAL 87 (176)
T ss_dssp CEEECTTSCEEEECT--TSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred HhcCCcCCceEEEee--CCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcC
Confidence 334567788888888 44454 3543 333344899999999888877 578888899999999998877 444 4888
Q ss_pred cccceeecccCcccccch--hhhcCCCCCEEeccccccccccCcc---cccCCCCCCEEEccccccc
Q 048566 396 KNLEVLSFLMSDIMQLPE--ELGQLNKLRLLDLTNCFHLKVIAPN---LISSLTRLEELYMGNCFIE 457 (760)
Q Consensus 396 ~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~~~~~---~i~~l~~L~~L~l~~~~~~ 457 (760)
++|++|++++|.+..+|. .+..+++|++|++++| .+..+|.. .+..+++|+.|+++.|...
T Consensus 88 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 88 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 899999999998888886 7888899999999887 56666653 4778899999998888654
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.21 E-value=1.6e-12 Score=124.55 Aligned_cols=155 Identities=18% Similarity=0.255 Sum_probs=106.0
Q ss_pred CccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCC-ccccccccccceeec
Q 048566 325 NLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGD-IAIIGKLKNLEVLSF 403 (760)
Q Consensus 325 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l 403 (760)
.++...+.+....+. .+|. .|..+++|++|++++|.+..+| .+..+++|++|++++|.+.. |..+..+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~-~l~~-~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIE-KMDA-TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCC-CCHH-HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHh-hhhH-HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence 344444544333332 2333 4578888888888888888887 78888888888888888777 555667788888888
Q ss_pred ccCcccccchhhhcCCCCCEEeccccccccccCc-ccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCC
Q 048566 404 LMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAP-NLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLT 482 (760)
Q Consensus 404 ~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 482 (760)
++|.+..+| .++.+++|++|++++| .+..++. ..+..+++|++|++++|.+....+.. ..........+..+++|+
T Consensus 101 ~~N~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-~~~~~~~~~~~~~l~~L~ 177 (198)
T 1ds9_A 101 SYNQIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN-NATSEYRIEVVKRLPNLK 177 (198)
T ss_dssp EEEECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTT-TTHHHHHHHHHHHCSSCS
T ss_pred cCCcCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccc-cchHHHHHHHHHhCCCcE
Confidence 888888877 6888888888888887 5666554 34778888888888888775433210 000001122366777888
Q ss_pred EEE
Q 048566 483 TLE 485 (760)
Q Consensus 483 ~L~ 485 (760)
.|+
T Consensus 178 ~Ld 180 (198)
T 1ds9_A 178 KLD 180 (198)
T ss_dssp EEC
T ss_pred EEC
Confidence 775
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.19 E-value=7.1e-11 Score=112.16 Aligned_cols=123 Identities=20% Similarity=0.265 Sum_probs=101.0
Q ss_pred eEEEecCCCCCCChhhhhhhccCCeeEecCCCCCC-ccccccccccceeecccCcccccch-hhhcCCCCCEEecccccc
Q 048566 354 RVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGD-IAIIGKLKNLEVLSFLMSDIMQLPE-ELGQLNKLRLLDLTNCFH 431 (760)
Q Consensus 354 r~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~ 431 (760)
++++++++.+..+|..+. .+|++|++++|.+.. |..+.++.+|++|++++|.+..++. .+.++++|++|++++| .
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-R 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-c
Confidence 678999999999987664 589999999999887 6788899999999999999988874 5888999999999998 7
Q ss_pred ccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEecc
Q 048566 432 LKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKN 490 (760)
Q Consensus 432 l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 490 (760)
+..+++..+..+++|++|++++|.+.. .....+..+++|+.|++++|.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~-----------~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISV-----------VPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCB-----------CCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCe-----------eChhhhhcCccccEEEeCCCC
Confidence 888888778899999999999887651 112346677888888887664
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.18 E-value=8e-11 Score=131.05 Aligned_cols=150 Identities=19% Similarity=0.250 Sum_probs=109.6
Q ss_pred hhhcCCCCceEEE-ecCCCCCCChh------hhhhh--ccCCeeEecCCCCCCccccccccccceeecccCcccccchhh
Q 048566 345 NFFIGMKKLRVLD-FTRMQFSSFPS------SIDLL--VNLHTLCLDQSALGDIAIIGKLKNLEVLSFLMSDIMQLPEEL 415 (760)
Q Consensus 345 ~~~~~l~~Lr~L~-l~~~~~~~lp~------~i~~l--~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~~ 415 (760)
..+..+++|+.|+ ++.+.+..++. .+..+ ..|++|++++|.+..++.++++.+|++|++++|.+..+|..+
T Consensus 403 ~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~ 482 (567)
T 1dce_A 403 ETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPAL 482 (567)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGG
T ss_pred HHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhh
Confidence 3456777888887 55554443322 22222 258889999998888555888899999999999888888888
Q ss_pred hcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEeccCCCCC
Q 048566 416 GQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDSILP 495 (760)
Q Consensus 416 ~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 495 (760)
+++++|++|++++| .+..+| .++++++|++|++++|.+... ..+..++.+++|+.|++++|.....+
T Consensus 483 ~~l~~L~~L~Ls~N-~l~~lp--~l~~l~~L~~L~Ls~N~l~~~----------~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 483 AALRCLEVLQASDN-ALENVD--GVANLPRLQELLLCNNRLQQS----------AAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp GGCTTCCEEECCSS-CCCCCG--GGTTCSSCCEEECCSSCCCSS----------STTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred hcCCCCCEEECCCC-CCCCCc--ccCCCCCCcEEECCCCCCCCC----------CCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 89999999999887 677776 388899999999988876511 11567888889999999888866655
Q ss_pred cch-----hccccceeE
Q 048566 496 EGF-----LARKLERFK 507 (760)
Q Consensus 496 ~~~-----~~~~L~~L~ 507 (760)
... .+++|+.|+
T Consensus 550 ~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 550 GIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SCTTHHHHHCTTCSEEE
T ss_pred cHHHHHHHHCcccCccC
Confidence 432 246777764
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.14 E-value=4.1e-11 Score=126.49 Aligned_cols=201 Identities=10% Similarity=0.103 Sum_probs=141.1
Q ss_pred cccceEEEeecCCCCCCCC-----C-CCCC-CccEEEeeccCCcccccCCchhhcCC-----CCceEEEecCCCCCCC-h
Q 048566 301 LRKCKAITLRYDSNRHFPE-----G-LECP-NLEFLCISLKDSSLEINIPGNFFIGM-----KKLRVLDFTRMQFSSF-P 367 (760)
Q Consensus 301 ~~~~r~l~l~~~~~~~~~~-----~-~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~l-----~~Lr~L~l~~~~~~~l-p 367 (760)
.+.++.+.+.++.....+. . .+++ +|+.|+++ ++.+.+ .....+..+ ++|++|++++|.+... +
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls--~N~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLS--GNSLGF-KNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECC--SSCGGG-SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECc--CCCCCH-HHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 4458889888555455542 2 2677 89999999 455553 222223443 8999999999999844 4
Q ss_pred hhhhhh-----ccCCeeEecCCCCCC--cccc----cc-ccccceeecccCccc-----ccchhhhcCC-CCCEEecccc
Q 048566 368 SSIDLL-----VNLHTLCLDQSALGD--IAII----GK-LKNLEVLSFLMSDIM-----QLPEELGQLN-KLRLLDLTNC 429 (760)
Q Consensus 368 ~~i~~l-----~~L~~L~l~~~~l~~--~~~~----~~-l~~L~~L~l~~~~i~-----~lp~~~~~l~-~L~~L~l~~~ 429 (760)
..+... ++|++|++++|.+.. +..+ .. ..+|++|++++|.+. .++..+..++ +|++|++++|
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 544443 899999999999866 2333 33 369999999999887 5566677776 9999999998
Q ss_pred ccccccCccc----ccCC-CCCCEEEccccccchhhhhccccccCCChhhhcCC-CCCCEEEEEeccCCCCCcch-----
Q 048566 430 FHLKVIAPNL----ISSL-TRLEELYMGNCFIEWEVERANSKRSNASLDELMHL-PRLTTLEIDVKNDSILPEGF----- 498 (760)
Q Consensus 430 ~~l~~~~~~~----i~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~----- 498 (760)
.+....... +... ++|++|++++|.+... ........+..+ ++|+.|++++|.....+...
T Consensus 178 -~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~-------~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~ 249 (362)
T 3goz_A 178 -NLASKNCAELAKFLASIPASVTSLDLSANLLGLK-------SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK 249 (362)
T ss_dssp -CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS-------CHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTT
T ss_pred -CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh-------HHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHH
Confidence 676666533 3445 6999999999987521 111124455553 59999999999876654421
Q ss_pred -hccccceeEEEecC
Q 048566 499 -LARKLERFKISIGN 512 (760)
Q Consensus 499 -~~~~L~~L~l~~~~ 512 (760)
..++|+.|+++.|.
T Consensus 250 ~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 250 DSLKHLQTVYLDYDI 264 (362)
T ss_dssp TTTTTCSEEEEEHHH
T ss_pred hcCCCccEEEeccCC
Confidence 23778888888776
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.14 E-value=1.5e-10 Score=128.96 Aligned_cols=124 Identities=21% Similarity=0.213 Sum_probs=106.2
Q ss_pred CceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCC-ccccccccccceeecccCcccccchhhhcCCCCCEEeccccc
Q 048566 352 KLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGD-IAIIGKLKNLEVLSFLMSDIMQLPEELGQLNKLRLLDLTNCF 430 (760)
Q Consensus 352 ~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~ 430 (760)
.|++|++++|.++.+|. ++.+++|++|++++|.+.. |..++++++|++|++++|.++.+| .++++++|+.|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N- 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN- 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS-
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC-
Confidence 58999999999999997 9999999999999999988 788999999999999999999998 8999999999999998
Q ss_pred cccccC-cccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCEEEE
Q 048566 431 HLKVIA-PNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEI 486 (760)
Q Consensus 431 ~l~~~~-~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 486 (760)
.+..++ +..++++++|++|++++|.+....+ .....+..+++|+.|++
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~--------~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG--------IQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS--------CTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc--------HHHHHHHHCcccCccCC
Confidence 788885 5559999999999999998763221 12233445889998863
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.12 E-value=3.2e-10 Score=106.17 Aligned_cols=106 Identities=23% Similarity=0.404 Sum_probs=73.3
Q ss_pred CCceEEEecCCCCCCChh-hhhhhccCCeeEecCCCCCC-c-cccccccccceeecccCcccccchh-hhcCCCCCEEec
Q 048566 351 KKLRVLDFTRMQFSSFPS-SIDLLVNLHTLCLDQSALGD-I-AIIGKLKNLEVLSFLMSDIMQLPEE-LGQLNKLRLLDL 426 (760)
Q Consensus 351 ~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l 426 (760)
++|++|+++++.+..+|. .++.+++|++|++++|.+.. + ..++++.+|++|++++|.+..+|.. +..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 567777777777776654 35677777777777777666 3 2356777777777777777766654 467777777777
Q ss_pred cccccccccCcccccCCCCCCEEEccccccc
Q 048566 427 TNCFHLKVIAPNLISSLTRLEELYMGNCFIE 457 (760)
Q Consensus 427 ~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~ 457 (760)
++| .+..+++..+..+++|++|++++|.+.
T Consensus 108 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 108 DTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence 776 566777665666777777777777654
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.06 E-value=7.1e-10 Score=103.80 Aligned_cols=126 Identities=21% Similarity=0.286 Sum_probs=102.6
Q ss_pred ceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCC-c-cccccccccceeecccCcccccchh-hhcCCCCCEEecccc
Q 048566 353 LRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGD-I-AIIGKLKNLEVLSFLMSDIMQLPEE-LGQLNKLRLLDLTNC 429 (760)
Q Consensus 353 Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~ 429 (760)
.+.++++++.+..+|..+. .+|++|++++|.+.. + ..++++.+|++|++++|.+..+|.. +..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 5788899999998886553 689999999999887 3 3478999999999999999988865 688999999999998
Q ss_pred ccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEeccCC
Q 048566 430 FHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDS 492 (760)
Q Consensus 430 ~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 492 (760)
.+..+++..++++++|++|++++|.+.. .....+..+++|+.|++++|...
T Consensus 87 -~l~~~~~~~~~~l~~L~~L~l~~N~l~~-----------~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 -KLQSLPNGVFDKLTQLKELALDTNQLKS-----------VPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCCSC-----------CCTTTTTTCTTCCEEECCSSCBC
T ss_pred -CccccCHHHhhCCcccCEEECcCCcceE-----------eCHHHhcCCcccCEEEecCCCee
Confidence 7888888778899999999999987641 11234577888888888877543
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.04 E-value=5e-10 Score=104.22 Aligned_cols=101 Identities=24% Similarity=0.432 Sum_probs=78.1
Q ss_pred eEEEecCCCCCCChhhhhhhccCCeeEecCCCCCC--ccccccccccceeecccCcccccchh-hhcCCCCCEEeccccc
Q 048566 354 RVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGD--IAIIGKLKNLEVLSFLMSDIMQLPEE-LGQLNKLRLLDLTNCF 430 (760)
Q Consensus 354 r~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~ 430 (760)
+.++++++.+..+|..+. .+|++|++++|.+.. +..++++++|++|++++|++..+|.. +.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N- 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN- 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-
Confidence 677888888887777664 778888888888766 34577888888888888888888765 477888888888887
Q ss_pred cccccCcccccCCCCCCEEEccccccc
Q 048566 431 HLKVIAPNLISSLTRLEELYMGNCFIE 457 (760)
Q Consensus 431 ~l~~~~~~~i~~l~~L~~L~l~~~~~~ 457 (760)
.+..+++..+.++++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 677777766778888888888887664
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.03 E-value=5.5e-10 Score=103.59 Aligned_cols=102 Identities=21% Similarity=0.324 Sum_probs=82.4
Q ss_pred ceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCC--ccccccccccceeecccCcccccchh-hhcCCCCCEEecccc
Q 048566 353 LRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGD--IAIIGKLKNLEVLSFLMSDIMQLPEE-LGQLNKLRLLDLTNC 429 (760)
Q Consensus 353 Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~ 429 (760)
.++++++++.+..+|..+. .+|++|++++|.+.. +..++++.+|++|++++|++..+|.. +.++++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 5678888888888887663 788888888888876 35588888888888888888888765 478888888888887
Q ss_pred ccccccCcccccCCCCCCEEEccccccc
Q 048566 430 FHLKVIAPNLISSLTRLEELYMGNCFIE 457 (760)
Q Consensus 430 ~~l~~~~~~~i~~l~~L~~L~l~~~~~~ 457 (760)
.+..+++..+.++++|++|++++|.+.
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 -QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred -ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 788888777888888888888888764
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.02 E-value=3.5e-11 Score=115.09 Aligned_cols=124 Identities=25% Similarity=0.293 Sum_probs=106.8
Q ss_pred CCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCCccccccccccce
Q 048566 321 LECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGDIAIIGKLKNLEV 400 (760)
Q Consensus 321 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~ 400 (760)
.++++|++|+++ ++.+. .+| .+..+++|++|++++|.+..+|..+..+++|++|++++|.+..++.++.+++|++
T Consensus 45 ~~l~~L~~L~ls--~n~l~-~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~ 119 (198)
T 1ds9_A 45 STLKACKHLALS--TNNIE-KIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRV 119 (198)
T ss_dssp HHTTTCSEEECS--EEEES-CCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSE
T ss_pred hcCCCCCEEECC--CCCCc-ccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCE
Confidence 378999999998 45565 366 5689999999999999999999999999999999999999999778999999999
Q ss_pred eecccCcccccch--hhhcCCCCCEEeccccccccccCc----------ccccCCCCCCEEE
Q 048566 401 LSFLMSDIMQLPE--ELGQLNKLRLLDLTNCFHLKVIAP----------NLISSLTRLEELY 450 (760)
Q Consensus 401 L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~~~~----------~~i~~l~~L~~L~ 450 (760)
|++++|.+..+|. .+..+++|++|++++| .+...++ ..+..+++|+.|+
T Consensus 120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEESEEECCCHHHHHHHTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred EECCCCcCCchhHHHHHhcCCCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 9999999998775 7899999999999998 4544332 2378899999997
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.99 E-value=4.7e-10 Score=128.97 Aligned_cols=122 Identities=21% Similarity=0.161 Sum_probs=97.9
Q ss_pred cCCCCCCChhhhhhhccCCeeEecCCCCCC-ccccccccccceeecccCcccccchhhhcCCCCCEEeccccccccccCc
Q 048566 359 TRMQFSSFPSSIDLLVNLHTLCLDQSALGD-IAIIGKLKNLEVLSFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAP 437 (760)
Q Consensus 359 ~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~ 437 (760)
..+.+...|..+..+.+|++|+|++|.+.. ++.+.++.+|++|+|++|.+..+|..+++|++|++|++++| .+..+|.
T Consensus 209 ~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~ 287 (727)
T 4b8c_D 209 IENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPA 287 (727)
T ss_dssp -------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCS
T ss_pred cccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccCh
Confidence 334444557788999999999999999888 67888999999999999999999999999999999999998 6888876
Q ss_pred ccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEeccCCCC
Q 048566 438 NLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDSIL 494 (760)
Q Consensus 438 ~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 494 (760)
. +++|++|++|++++|.+. ..+..++.+++|+.|++++|.....
T Consensus 288 ~-~~~l~~L~~L~L~~N~l~------------~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 288 E-LGSCFQLKYFYFFDNMVT------------TLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp S-GGGGTTCSEEECCSSCCC------------CCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred h-hcCCCCCCEEECCCCCCC------------ccChhhhcCCCccEEeCCCCccCCC
Confidence 6 899999999999999764 3355689999999999999887643
No 141
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.96 E-value=3.6e-09 Score=113.89 Aligned_cols=237 Identities=18% Similarity=0.134 Sum_probs=135.6
Q ss_pred CCCCcHHHHHHHHHHHHhhh---cCCC-eEEEEEecCCCCHHHHHHHHHHHhCccccc--hhhHHHHHHHHHHHH-cCCc
Q 048566 1 MGGIGKTTLVKKVARQAMED---KLFD-MVVFSEVSQIPDIKRIQQEIAEKLGLELRE--EVESSRASRIFERLR-NEKK 73 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~---~~F~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~-~~~r 73 (760)
++|+||||||+++++..... ..|+ .++|+++....+...+++.++++++.+... ....+....+.+.+. .+++
T Consensus 60 ~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 139 (412)
T 1w5s_A 60 RVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHY 139 (412)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCE
T ss_pred cCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCe
Confidence 48999999999999886532 1233 367888877778889999999998765331 122334455555554 2589
Q ss_pred EEEEEECCCCcc--------ccccccccccCC---C--CCcEEEEeeCCH----------------------------HH
Q 048566 74 ILVVLDNIWKHL--------DLETVGIPFGED---H--KGCKLLLTARDR----------------------------KE 112 (760)
Q Consensus 74 ~LlVlDdv~~~~--------~~~~l~~~~~~~---~--~gs~IlvTTR~~----------------------------~~ 112 (760)
++||+||++... .+..+...+... + ....||+|||.. ++
T Consensus 140 ~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e 219 (412)
T 1w5s_A 140 LLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRE 219 (412)
T ss_dssp EEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHH
T ss_pred EEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHH
Confidence 999999998642 222222222111 2 344577787521 67
Q ss_pred HHHHHHHHh---CCCcCChhhHHHHHHHHHHhC------CcchHHHHHHHHH-c-----cC---ChHHHHHHHHHhcCCC
Q 048566 113 AWRLFKMMV---GDDVENRELKSTAIDVARACG------GLPIALTTVAMAL-R-----SK---SLHGWKVSLGELRTPS 174 (760)
Q Consensus 113 a~~Lf~~~a---~~~~~~~~~~~~~~~i~~~c~------glPLai~~~~~~l-~-----~~---~~~~w~~~l~~l~~~~ 174 (760)
++++|..++ +.... --.+....|++.++ |.|..+..+.... . .. +...+..++.....
T Consensus 220 ~~~ll~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-- 295 (412)
T 1w5s_A 220 LYTILEQRAELGLRDTV--WEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-- 295 (412)
T ss_dssp HHHHHHHHHHHHBCTTS--CCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhcCCCCC--CChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc--
Confidence 788886554 22111 11356778999999 9997555443321 1 11 33444444433210
Q ss_pred CCCcCCchhHHHHHHHHhhhcCChhhHhHHHhhhccCc----ccccHHHHHHHHH--h---cCccccccchHHHHHHHHH
Q 048566 175 MDNFEGVSAETYSSIELSFNHLKDEQLKKIFLLCSQME----TRILTLDLFKYSM--G---LGIFKRVNKMEDARDKLYA 245 (760)
Q Consensus 175 ~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~a~fp----~~~~~~~li~~w~--a---~g~i~~~~~~~~~~~~~~~ 245 (760)
...+.-.++.||.++ +.++..+|.+. ..+...++...+. + .|. . . -....+.+
T Consensus 296 -----------~~~~~~~l~~l~~~~-~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~--~~~~~~~~ 357 (412)
T 1w5s_A 296 -----------ASIQTHELEALSIHE-LIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNV-K---P--RGYTQYHI 357 (412)
T ss_dssp ---------------CCSSSSSCHHH-HHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC-C---C--CCHHHHHH
T ss_pred -----------cchHHHHHHcCCHHH-HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC-C---C--CCHHHHHH
Confidence 112334567788874 88887777643 2233434433331 1 111 0 0 01233456
Q ss_pred HHHHHHhccccccc
Q 048566 246 LVHELRNSCLLIED 259 (760)
Q Consensus 246 ~l~~L~~~sll~~~ 259 (760)
+++.|++.++|...
T Consensus 358 ~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 358 YLKHLTSLGLVDAK 371 (412)
T ss_dssp HHHHHHHTTSEEEE
T ss_pred HHHHHHhCCCEEee
Confidence 78999999999764
No 142
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.95 E-value=1.9e-08 Score=105.53 Aligned_cols=241 Identities=12% Similarity=0.119 Sum_probs=131.3
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC------CHHHHHHHHHHHhCcc-----------------c--cch
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP------DIKRIQQEIAEKLGLE-----------------L--REE 55 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~------~~~~~~~~i~~~l~~~-----------------~--~~~ 55 (760)
++|+|||||+++++++. . ++|+++.... +...+++.+.+.+... . ...
T Consensus 39 ~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (350)
T 2qen_A 39 IRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKL 111 (350)
T ss_dssp CTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGC
T ss_pred CCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccc
Confidence 47999999999999764 1 7788876432 5666677776655420 0 011
Q ss_pred hhHHHHHHHHHHHHcCCcEEEEEECCCCccc---------cccccccccCCCCCcEEEEeeCCH----------------
Q 048566 56 VESSRASRIFERLRNEKKILVVLDNIWKHLD---------LETVGIPFGEDHKGCKLLLTARDR---------------- 110 (760)
Q Consensus 56 ~~~~~~~~~~~~l~~~~r~LlVlDdv~~~~~---------~~~l~~~~~~~~~gs~IlvTTR~~---------------- 110 (760)
...+....+.+.....++++||+||++.... +..+.... ...++.++|+|++..
T Consensus 112 ~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l 190 (350)
T 2qen_A 112 SLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY-DSLPNLKIILTGSEVGLLHDFLKITDYESPL 190 (350)
T ss_dssp CHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH-HHCTTEEEEEEESSHHHHHHHHCTTCTTSTT
T ss_pred hHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH-HhcCCeEEEEECCcHHHHHHHHhhcCCCCcc
Confidence 1223333443333321489999999987543 12222111 112467788887532
Q ss_pred ---------------HHHHHHHHHHhCCCcCChhhHHHHHHHHHHhCCcchHHHHHHHHHcc-CChHHHHHHHHHhcCCC
Q 048566 111 ---------------KEAWRLFKMMVGDDVENRELKSTAIDVARACGGLPIALTTVAMALRS-KSLHGWKVSLGELRTPS 174 (760)
Q Consensus 111 ---------------~~a~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~-~~~~~w~~~l~~l~~~~ 174 (760)
+|+.+++.......... --.+.+..+++.++|.|+++..++..+.. .+...+. ..+
T Consensus 191 ~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~-~~~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~---~~~---- 262 (350)
T 2qen_A 191 YGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD-VPENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAM---KRT---- 262 (350)
T ss_dssp TTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHH---HHH----
T ss_pred ccCccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHH---HHH----
Confidence 56666666543110000 01246788999999999999998876533 2322221 111
Q ss_pred CCCcCCchhHHHHHHHHhhhcC---ChhhHhHHHhhhccCcccccHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHH
Q 048566 175 MDNFEGVSAETYSSIELSFNHL---KDEQLKKIFLLCSQMETRILTLDLFKYSMGLGIFKRVNKMEDARDKLYALVHELR 251 (760)
Q Consensus 175 ~~~~~~~~~~~~~~l~~sy~~L---~~~~lk~cfl~~a~fp~~~~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~l~~L~ 251 (760)
...+...+.-.+..+ ++. .+..+..+|. .......+.....+..- + .+ .....++++.|.
T Consensus 263 -------~~~~~~~~~~~l~~l~~~~~~-~~~~l~~la~--g~~~~~~l~~~~~~~~~--~-~~----~~~~~~~l~~L~ 325 (350)
T 2qen_A 263 -------LEVAKGLIMGELEELRRRSPR-YVDILRAIAL--GYNRWSLIRDYLAVKGT--K-IP----EPRLYALLENLK 325 (350)
T ss_dssp -------HHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHT--TCCSHHHHHHHHHHTTC--C-CC----HHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHhCChh-HHHHHHHHHh--CCCCHHHHHHHHHHHhC--C-CC----HHHHHHHHHHHH
Confidence 011111111112222 555 4888888887 22333344333211100 0 01 123456689999
Q ss_pred hcccccccCCCcee-ccHHHHHHHH
Q 048566 252 NSCLLIEDSNEQFS-MHDVVRDVAI 275 (760)
Q Consensus 252 ~~sll~~~~~~~~~-mH~lv~~~~~ 275 (760)
+.++|.... +.|+ .|++++.+.+
T Consensus 326 ~~gli~~~~-~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 326 KMNWIVEED-NTYKIADPVVATVLR 349 (350)
T ss_dssp HTTSEEEET-TEEEESSHHHHHHHT
T ss_pred hCCCEEecC-CEEEEecHHHHHHHc
Confidence 999998653 4565 4788887753
No 143
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.84 E-value=6.1e-08 Score=101.89 Aligned_cols=242 Identities=14% Similarity=0.184 Sum_probs=129.1
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCC-----CCHHHHHHHHHHHhCc------------------cccc---
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQI-----PDIKRIQQEIAEKLGL------------------ELRE--- 54 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~-----~~~~~~~~~i~~~l~~------------------~~~~--- 54 (760)
.+|+|||||+++++++.. . .++|+++... .+....+..+.+.+.. +...
T Consensus 38 ~~G~GKT~L~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~ 112 (357)
T 2fna_A 38 LRRTGKSSIIKIGINELN----L-PYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEI 112 (357)
T ss_dssp STTSSHHHHHHHHHHHHT----C-CEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSE
T ss_pred CCCCCHHHHHHHHHHhcC----C-CEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEE
Confidence 479999999999998764 1 2689988753 3445555555443311 0000
Q ss_pred h-h----hHHHHHHHHHHHHc-C-CcEEEEEECCCCcc-----ccccccccccCCCCCcEEEEeeCCH------------
Q 048566 55 E-V----ESSRASRIFERLRN-E-KKILVVLDNIWKHL-----DLETVGIPFGEDHKGCKLLLTARDR------------ 110 (760)
Q Consensus 55 ~-~----~~~~~~~~~~~l~~-~-~r~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~IlvTTR~~------------ 110 (760)
. . .......+.+.+.. . ++++||+||++... ++..+...+....++.++|+|+|..
T Consensus 113 ~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~ 192 (357)
T 2fna_A 113 KFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDP 192 (357)
T ss_dssp EEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCT
T ss_pred EeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCC
Confidence 0 0 01123344444442 1 49999999997642 2222211121222467889988753
Q ss_pred -------------------HHHHHHHHHHhCC-CcCChhhHHHHHHHHHHhCCcchHHHHHHHHHccC-ChHHHHH-HHH
Q 048566 111 -------------------KEAWRLFKMMVGD-DVENRELKSTAIDVARACGGLPIALTTVAMALRSK-SLHGWKV-SLG 168 (760)
Q Consensus 111 -------------------~~a~~Lf~~~a~~-~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~-~~~~w~~-~l~ 168 (760)
+++.+++....+. ....++ ...|++.++|.|+++..++..+... +...|.. +.+
T Consensus 193 ~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~ 268 (357)
T 2fna_A 193 ESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLE 268 (357)
T ss_dssp TSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred CCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHH
Confidence 4555555543210 001111 1689999999999999998776432 3333321 111
Q ss_pred HhcCCCCCCcCCchhHHHHHHH-Hhhh--cCChhhHhHHHhhhccCcccccHHHHHHHHH-hcCccccccchHHHHHHHH
Q 048566 169 ELRTPSMDNFEGVSAETYSSIE-LSFN--HLKDEQLKKIFLLCSQMETRILTLDLFKYSM-GLGIFKRVNKMEDARDKLY 244 (760)
Q Consensus 169 ~l~~~~~~~~~~~~~~~~~~l~-~sy~--~L~~~~lk~cfl~~a~fp~~~~~~~li~~w~-a~g~i~~~~~~~~~~~~~~ 244 (760)
.. ...+...+. ..++ .+++. .+..+..+|.- . ....+..... ..|. .. ......
T Consensus 269 ~~-----------~~~~~~~l~~~~~~~~~l~~~-~~~~l~~la~g--~-~~~~l~~~~~~~~g~---~~----~~~~~~ 326 (357)
T 2fna_A 269 YA-----------KKLILKEFENFLHGREIARKR-YLNIMRTLSKC--G-KWSDVKRALELEEGI---EI----SDSEIY 326 (357)
T ss_dssp HH-----------HHHHHHHHHHHHTTCGGGHHH-HHHHHHHHTTC--B-CHHHHHHHHHHHHCS---CC----CHHHHH
T ss_pred HH-----------HHHHHHHHHHHhhccccccHH-HHHHHHHHHcC--C-CHHHHHHHHHHhcCC---CC----CHHHHH
Confidence 10 011111121 2211 56666 48888888872 2 4333332210 1120 00 112345
Q ss_pred HHHHHHHhcccccccCCCcee-ccHHHHHHH
Q 048566 245 ALVHELRNSCLLIEDSNEQFS-MHDVVRDVA 274 (760)
Q Consensus 245 ~~l~~L~~~sll~~~~~~~~~-mH~lv~~~~ 274 (760)
++++.|++.++|.... +.|+ .|++++++.
T Consensus 327 ~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 327 NYLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred HHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 6689999999998754 5666 578888764
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.81 E-value=1.2e-08 Score=94.79 Aligned_cols=103 Identities=20% Similarity=0.281 Sum_probs=82.4
Q ss_pred cEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCC-hhhhhhhccCCeeEecCCCCCC-ccc-cccccccceeec
Q 048566 327 EFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSF-PSSIDLLVNLHTLCLDQSALGD-IAI-IGKLKNLEVLSF 403 (760)
Q Consensus 327 r~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~-~~~-~~~l~~L~~L~l 403 (760)
+.++++ .+.+. .+|..+. ++|++|++++|.+..+ |..++.+++|++|++++|.+.. ++. +.++.+|++|++
T Consensus 15 ~~l~~~--~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 15 TLVNCQ--NIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SEEECC--SSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cEEEeC--CCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence 566666 44443 5777553 7899999999999877 6678999999999999999888 443 688999999999
Q ss_pred ccCcccccchh-hhcCCCCCEEeccccccccccC
Q 048566 404 LMSDIMQLPEE-LGQLNKLRLLDLTNCFHLKVIA 436 (760)
Q Consensus 404 ~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~~ 436 (760)
++|.+..+|.. +..+++|++|++++| .+...+
T Consensus 89 ~~N~l~~l~~~~~~~l~~L~~L~L~~N-~~~c~~ 121 (174)
T 2r9u_A 89 NDNHLKSIPRGAFDNLKSLTHIYLYNN-PWDCEC 121 (174)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSS-CBCTTB
T ss_pred CCCccceeCHHHhccccCCCEEEeCCC-Cccccc
Confidence 99999998875 888999999999997 454433
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.78 E-value=1.3e-08 Score=94.13 Aligned_cols=98 Identities=27% Similarity=0.309 Sum_probs=79.2
Q ss_pred ccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCC-hhhhhhhccCCeeEecCCCCCC-cc-ccccccccceee
Q 048566 326 LEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSF-PSSIDLLVNLHTLCLDQSALGD-IA-IIGKLKNLEVLS 402 (760)
Q Consensus 326 Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~-~~-~~~~l~~L~~L~ 402 (760)
.+.++++ ++.+. .+|..+ .++|++|++++|.+..+ |..+..+++|++|++++|.+.. ++ .+.++.+|++|+
T Consensus 11 ~~~l~~s--~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 11 GTTVDCS--GKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp TTEEECT--TSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEeC--CCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence 4566666 45554 477655 37789999999999887 6678899999999999999887 43 468899999999
Q ss_pred cccCcccccchh-hhcCCCCCEEecccc
Q 048566 403 FLMSDIMQLPEE-LGQLNKLRLLDLTNC 429 (760)
Q Consensus 403 l~~~~i~~lp~~-~~~l~~L~~L~l~~~ 429 (760)
+++|.+..+|.. +.++++|++|++++|
T Consensus 85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 85 LNDNQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCccCEeCHHHhcCCCCCCEEEeCCC
Confidence 999999988864 888999999999987
No 146
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.68 E-value=9.2e-07 Score=93.89 Aligned_cols=234 Identities=12% Similarity=0.045 Sum_probs=136.1
Q ss_pred CCCCcHHHHHHHHHHHHhhhc----C--CCeEEEEEecCCC-CHHHHHHHHHHHh-Ccccc--chhhHHHHHHHHHHHHc
Q 048566 1 MGGIGKTTLVKKVARQAMEDK----L--FDMVVFSEVSQIP-DIKRIQQEIAEKL-GLELR--EEVESSRASRIFERLRN 70 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~----~--F~~~~wv~~~~~~-~~~~~~~~i~~~l-~~~~~--~~~~~~~~~~~~~~l~~ 70 (760)
.+|+||||+|+++++...... . ...++|++++... +...++..+++++ +.+.. .....+....+.+.+..
T Consensus 53 ~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 132 (384)
T 2qby_B 53 LTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN 132 (384)
T ss_dssp CTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc
Confidence 479999999999999864321 1 3357899887777 8888889998887 22211 12223445666766764
Q ss_pred CCcEEEEEECCCCccc--cccc-cccccCCCCCcEEEEeeCCH-------------------------HHHHHHHHHHhC
Q 048566 71 EKKILVVLDNIWKHLD--LETV-GIPFGEDHKGCKLLLTARDR-------------------------KEAWRLFKMMVG 122 (760)
Q Consensus 71 ~~r~LlVlDdv~~~~~--~~~l-~~~~~~~~~gs~IlvTTR~~-------------------------~~a~~Lf~~~a~ 122 (760)
++.+||+||++.... +... ...+.....+.+||+||+.. ++..++|..++.
T Consensus 133 -~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 133 -IRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp -SCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred -CCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 455999999986532 1222 12222111677888888853 788888887652
Q ss_pred ---C-CcCChhhHHHHHHHHHHhC---Ccch-HHHHHHHHH--c---cC-ChHHHHHHHHHhcCCCCCCcCCchhHHHHH
Q 048566 123 ---D-DVENRELKSTAIDVARACG---GLPI-ALTTVAMAL--R---SK-SLHGWKVSLGELRTPSMDNFEGVSAETYSS 188 (760)
Q Consensus 123 ---~-~~~~~~~~~~~~~i~~~c~---glPL-ai~~~~~~l--~---~~-~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~ 188 (760)
. ...+ .+..+.+++.++ |.|. |+..+-... . .. +.+.+..++++.. ...
T Consensus 212 ~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~--------------~~~ 274 (384)
T 2qby_B 212 YGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYE--------------QER 274 (384)
T ss_dssp HTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHH--------------HHH
T ss_pred hhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh--------------cch
Confidence 1 1112 245667777877 8765 444433322 2 12 6677777766531 234
Q ss_pred HHHhhhcCChhhHhHHHhhhccCcccccHH-HHHHHHHhcCccccccchHHHHHHHHHHHHHHHhccccccc
Q 048566 189 IELSFNHLKDEQLKKIFLLCSQMETRILTL-DLFKYSMGLGIFKRVNKMEDARDKLYALVHELRNSCLLIED 259 (760)
Q Consensus 189 l~~sy~~L~~~~lk~cfl~~a~fp~~~~~~-~li~~w~a~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~ 259 (760)
+..+++.++.++ +..+..++....+-.+. .....--..| ... .....+.++++.|..++++...
T Consensus 275 ~~~~~~~l~~~~-~~~l~al~~~~~~~~~~~~~~~~~~~~g-~~~-----~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 275 LIEAVKALPFHY-KLALRSLIESEDVMSAHKMYTDLCNKFK-QKP-----LSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHSSCHHH-HHHHHHHHTCCBHHHHHHHHHHHHHHTT-CCC-----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHcCCHHH-HHHHHHHHHhcccChHHHHHHHHHHHcC-CCC-----CCHHHHHHHHHHHHhCCCEEEE
Confidence 566778898874 55555555511211111 1111111122 111 1224556779999999999864
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.63 E-value=6.2e-09 Score=109.44 Aligned_cols=134 Identities=15% Similarity=0.123 Sum_probs=84.5
Q ss_pred CCCceEEEecCCCCCC--ChhhhhhhccCCeeEecCCCCCC--cccc-----ccccccceeecccCcccc-----cchhh
Q 048566 350 MKKLRVLDFTRMQFSS--FPSSIDLLVNLHTLCLDQSALGD--IAII-----GKLKNLEVLSFLMSDIMQ-----LPEEL 415 (760)
Q Consensus 350 l~~Lr~L~l~~~~~~~--lp~~i~~l~~L~~L~l~~~~l~~--~~~~-----~~l~~L~~L~l~~~~i~~-----lp~~~ 415 (760)
.++|++|+|++|.+.. +..-...+.+|++|++++|.+.+ ...+ ....+|++|++++|.+.. ++..+
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 3678888888887752 22233456678888888887765 2333 235678888888887653 45556
Q ss_pred hcCCCCCEEeccccccccccC----cccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEeccC
Q 048566 416 GQLNKLRLLDLTNCFHLKVIA----PNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKND 491 (760)
Q Consensus 416 ~~l~~L~~L~l~~~~~l~~~~----~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 491 (760)
..+++|++|++++| .+.... ...+...++|++|++++|.+...- .......+...++|+.|++++|.+
T Consensus 180 ~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g-------~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 180 AGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA-------ALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH-------HHHHHHHHHHCSSCCEEECTTSSC
T ss_pred hcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH-------HHHHHHHHHhCCCCCEEeccCCCC
Confidence 67778888888887 454322 223556678888888888764211 112234455667788888877654
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.61 E-value=6e-08 Score=101.52 Aligned_cols=99 Identities=20% Similarity=0.227 Sum_probs=62.8
Q ss_pred EEecCC-CCCCChhhhhhhccCCeeEecC-CCCCC-c-cccccccccceeecccCcccccch-hhhcCCCCCEEeccccc
Q 048566 356 LDFTRM-QFSSFPSSIDLLVNLHTLCLDQ-SALGD-I-AIIGKLKNLEVLSFLMSDIMQLPE-ELGQLNKLRLLDLTNCF 430 (760)
Q Consensus 356 L~l~~~-~~~~lp~~i~~l~~L~~L~l~~-~~l~~-~-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~ 430 (760)
++++++ .+..+|. ++.+.+|++|+|++ |.+.. + ..|++|.+|++|+|++|.+..+|. .+.+|++|++|+|++|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N- 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN- 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-
Confidence 455555 5666666 66666666777664 66655 2 346667777777777776666653 4566777777777766
Q ss_pred cccccCcccccCCCCCCEEEccccccc
Q 048566 431 HLKVIAPNLISSLTRLEELYMGNCFIE 457 (760)
Q Consensus 431 ~l~~~~~~~i~~l~~L~~L~l~~~~~~ 457 (760)
.+..+|+..+..++ |+.|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 56666665444444 777777666554
No 149
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.55 E-value=1.6e-07 Score=97.45 Aligned_cols=159 Identities=13% Similarity=0.119 Sum_probs=96.6
Q ss_pred CCchhhcC--------CCCceEEEecCCCCCCCh-hhhhhhccCCeeEecCCCCCC--ccccccccccceeecccCcc--
Q 048566 342 IPGNFFIG--------MKKLRVLDFTRMQFSSFP-SSIDLLVNLHTLCLDQSALGD--IAIIGKLKNLEVLSFLMSDI-- 408 (760)
Q Consensus 342 ~~~~~~~~--------l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~i-- 408 (760)
+|...|.+ +.+|+.|++++ .++.++ ..+..|.+|+.|+++.+.+.. ...|..+.++.++.......
T Consensus 84 I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~ 162 (329)
T 3sb4_A 84 VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYR 162 (329)
T ss_dssp ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHH
T ss_pred cCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhh
Confidence 55666666 77777777776 666554 346677777777777766544 23344444454444333100
Q ss_pred -------------------------cccch---------------------------hh-hcCCCCCEEecccccccccc
Q 048566 409 -------------------------MQLPE---------------------------EL-GQLNKLRLLDLTNCFHLKVI 435 (760)
Q Consensus 409 -------------------------~~lp~---------------------------~~-~~l~~L~~L~l~~~~~l~~~ 435 (760)
..++. .+ ..+++|+.+++++| .+..+
T Consensus 163 ~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I 241 (329)
T 3sb4_A 163 FKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-NATTI 241 (329)
T ss_dssp TSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB-CCCEE
T ss_pred ccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC-Cccee
Confidence 00111 01 13678888888876 58888
Q ss_pred CcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCC-EEEEEeccCCCCCcchh--ccccceeEEEecC
Q 048566 436 APNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLT-TLEIDVKNDSILPEGFL--ARKLERFKISIGN 512 (760)
Q Consensus 436 ~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~--~~~L~~L~l~~~~ 512 (760)
+...+.++++|+++++..+ ...+ ....+.++++|+ .+.+.. ....++..++ +.+|+.+.+..+.
T Consensus 242 ~~~aF~~~~~L~~l~l~~n--i~~I----------~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 242 PDFTFAQKKYLLKIKLPHN--LKTI----------GQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDK 308 (329)
T ss_dssp CTTTTTTCTTCCEEECCTT--CCEE----------CTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSC
T ss_pred cHhhhhCCCCCCEEECCcc--ccee----------hHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCc
Confidence 8888888888888888776 2112 245677888888 888876 4444544443 4677777776555
Q ss_pred CCC
Q 048566 513 ESF 515 (760)
Q Consensus 513 ~~~ 515 (760)
+..
T Consensus 309 i~~ 311 (329)
T 3sb4_A 309 ITT 311 (329)
T ss_dssp CCE
T ss_pred cCc
Confidence 433
No 150
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.52 E-value=3e-06 Score=89.94 Aligned_cols=235 Identities=14% Similarity=0.110 Sum_probs=134.5
Q ss_pred CCCCcHHHHHHHHHHHHhhhc---CCC-eEEEEEecCCCCHHHHHHHHHHHhCccccc--hhhHHHHHHHHHHHHc-CCc
Q 048566 1 MGGIGKTTLVKKVARQAMEDK---LFD-MVVFSEVSQIPDIKRIQQEIAEKLGLELRE--EVESSRASRIFERLRN-EKK 73 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~---~F~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~~-~~r 73 (760)
.+|+||||+|+++++...... ... .++|+++....+...++..++++++..... ....+....+.+.+.. +++
T Consensus 52 ~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 131 (387)
T 2v1u_A 52 LTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGI 131 (387)
T ss_dssp CTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSE
T ss_pred CCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCe
Confidence 479999999999998864321 112 467888888888899999999998764332 1233445566666643 468
Q ss_pred EEEEEECCCCcccc----ccccccc--cCC---CCCcEEEEeeCCH--------------------------HHHHHHHH
Q 048566 74 ILVVLDNIWKHLDL----ETVGIPF--GED---HKGCKLLLTARDR--------------------------KEAWRLFK 118 (760)
Q Consensus 74 ~LlVlDdv~~~~~~----~~l~~~~--~~~---~~gs~IlvTTR~~--------------------------~~a~~Lf~ 118 (760)
.+||+|+++..... +.+...+ ... ..+..+|.||+.. ++..+++.
T Consensus 132 ~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~ 211 (387)
T 2v1u_A 132 YIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILE 211 (387)
T ss_dssp EEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHH
T ss_pred EEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHH
Confidence 99999999875321 2221111 111 3455677777643 67778887
Q ss_pred HHhC----CCcCChhhHHHHHHHHHHhC---Ccc-hHHHHHHHHHc-----c--C-ChHHHHHHHHHhcCCCCCCcCCch
Q 048566 119 MMVG----DDVENRELKSTAIDVARACG---GLP-IALTTVAMALR-----S--K-SLHGWKVSLGELRTPSMDNFEGVS 182 (760)
Q Consensus 119 ~~a~----~~~~~~~~~~~~~~i~~~c~---glP-Lai~~~~~~l~-----~--~-~~~~w~~~l~~l~~~~~~~~~~~~ 182 (760)
..+. ..... .+..+.+++.++ |.| .|+..+..... + . +.+.+..+++...
T Consensus 212 ~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~----------- 277 (387)
T 2v1u_A 212 TRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE----------- 277 (387)
T ss_dssp HHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH-----------
T ss_pred HHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh-----------
Confidence 7641 11112 234667778887 988 33333322221 1 1 5566666665431
Q ss_pred hHHHHHHHHhhhcCChhhHhHHHhhhc-cCc--ccccHHHHHHHHH----hcCccccccchHHHHHHHHHHHHHHHhccc
Q 048566 183 AETYSSIELSFNHLKDEQLKKIFLLCS-QME--TRILTLDLFKYSM----GLGIFKRVNKMEDARDKLYALVHELRNSCL 255 (760)
Q Consensus 183 ~~~~~~l~~sy~~L~~~~lk~cfl~~a-~fp--~~~~~~~li~~w~----a~g~i~~~~~~~~~~~~~~~~l~~L~~~sl 255 (760)
...+.-++..++.++ +..++..+ ++. ..+...++.+... ..| .. .-....+.++++.|...++
T Consensus 278 ---~~~~~~~~~~l~~~~-~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~l~~L~~~gl 347 (387)
T 2v1u_A 278 ---RDRVSEVVRTLPLHA-KLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG-LE-----HVTLRRVSGIISELDMLGI 347 (387)
T ss_dssp ---HHHHHHHHHSSCHHH-HHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT-CC-----CCCHHHHHHHHHHHHHTTS
T ss_pred ---hchHHHHHHcCCHHH-HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC-CC-----CCCHHHHHHHHHHHHhCCC
Confidence 224556778898874 55555444 222 2233343333221 112 11 1123455677889999999
Q ss_pred cccc
Q 048566 256 LIED 259 (760)
Q Consensus 256 l~~~ 259 (760)
+...
T Consensus 348 i~~~ 351 (387)
T 2v1u_A 348 VKSR 351 (387)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 8763
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.51 E-value=1.1e-07 Score=98.65 Aligned_cols=167 Identities=17% Similarity=0.212 Sum_probs=122.2
Q ss_pred CCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCCh-hhhhhhccCCeeEecCCC-------CCC------
Q 048566 323 CPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFP-SSIDLLVNLHTLCLDQSA-------LGD------ 388 (760)
Q Consensus 323 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~-------l~~------ 388 (760)
|++|+.+.+.. .+. .++...|.++++|+.++++++.+..++ ..+..+.++.++...... +..
T Consensus 100 ~~~L~~l~L~~---~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 100 KQTLEKVILSE---KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp CTTCCC-CBCT---TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred cCCCcEEECCc---ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 89999999983 343 478888999999999999999876553 445555555555544311 000
Q ss_pred ------------------------------------------cccc-ccccccceeecccCcccccch-hhhcCCCCCEE
Q 048566 389 ------------------------------------------IAII-GKLKNLEVLSFLMSDIMQLPE-ELGQLNKLRLL 424 (760)
Q Consensus 389 ------------------------------------------~~~~-~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L 424 (760)
...+ ..+.+|+.|++++|++..+|. .+.++.+|+.+
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 0000 137899999999999999986 57889999999
Q ss_pred eccccccccccCcccccCCCCCC-EEEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEeccCCCCCcchh--cc
Q 048566 425 DLTNCFHLKVIAPNLISSLTRLE-ELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDSILPEGFL--AR 501 (760)
Q Consensus 425 ~l~~~~~l~~~~~~~i~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~ 501 (760)
++.++ +..++..++.++++|+ .+.+... +. . .....+.++++|+.+.+..+....++..++ ++
T Consensus 256 ~l~~n--i~~I~~~aF~~~~~L~~~l~l~~~-l~-~----------I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~ 321 (329)
T 3sb4_A 256 KLPHN--LKTIGQRVFSNCGRLAGTLELPAS-VT-A----------IEFGAFMGCDNLRYVLATGDKITTLGDELFGNGV 321 (329)
T ss_dssp ECCTT--CCEECTTTTTTCTTCCEEEEECTT-CC-E----------ECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTC
T ss_pred ECCcc--cceehHHHhhCChhccEEEEEccc-ce-E----------EchhhhhCCccCCEEEeCCCccCccchhhhcCCc
Confidence 99985 8889999899999999 9999772 21 1 224678899999999998888777776654 36
Q ss_pred ccceeE
Q 048566 502 KLERFK 507 (760)
Q Consensus 502 ~L~~L~ 507 (760)
+|+.+.
T Consensus 322 ~L~~ly 327 (329)
T 3sb4_A 322 PSKLIY 327 (329)
T ss_dssp CCCEEE
T ss_pred chhhhc
Confidence 676654
No 152
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.44 E-value=3.4e-06 Score=89.50 Aligned_cols=235 Identities=16% Similarity=0.144 Sum_probs=130.0
Q ss_pred CCCCcHHHHHHHHHHHHhhhcC-CCeEEEEEecCCCCHHHHHHHHHHHhCccccc--hhhHHHHHHHHHHHHc-CCcEEE
Q 048566 1 MGGIGKTTLVKKVARQAMEDKL-FDMVVFSEVSQIPDIKRIQQEIAEKLGLELRE--EVESSRASRIFERLRN-EKKILV 76 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~-F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~~-~~r~Ll 76 (760)
.+|+||||||+++++....... -..++|+++....+...++..++..++..... ....+....+.+.+.. +++.+|
T Consensus 53 ~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vl 132 (386)
T 2qby_A 53 LTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVI 132 (386)
T ss_dssp CTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEE
Confidence 4799999999999998753311 12578888877777788888888877654321 1223344556666653 358999
Q ss_pred EEECCCCcc------ccccccccccC-CCCCcEEEEeeCCH--------------------------HHHHHHHHHHhC-
Q 048566 77 VLDNIWKHL------DLETVGIPFGE-DHKGCKLLLTARDR--------------------------KEAWRLFKMMVG- 122 (760)
Q Consensus 77 VlDdv~~~~------~~~~l~~~~~~-~~~gs~IlvTTR~~--------------------------~~a~~Lf~~~a~- 122 (760)
|+|+++... .+..+...+.. ...+..+|+||+.. ++..+++...+.
T Consensus 133 ilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~ 212 (386)
T 2qby_A 133 VLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQM 212 (386)
T ss_dssp EEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHh
Confidence 999997642 12222211111 23345677777754 677888876541
Q ss_pred ---CCcCChhhHHHHHHHHHHhC---CcchH-HHHHHHHHc-----c--C-ChHHHHHHHHHhcCCCCCCcCCchhHHHH
Q 048566 123 ---DDVENRELKSTAIDVARACG---GLPIA-LTTVAMALR-----S--K-SLHGWKVSLGELRTPSMDNFEGVSAETYS 187 (760)
Q Consensus 123 ---~~~~~~~~~~~~~~i~~~c~---glPLa-i~~~~~~l~-----~--~-~~~~w~~~l~~l~~~~~~~~~~~~~~~~~ 187 (760)
..... .+..+.+++.++ |.|.. +..+..... + . +.+.++.++.... ..
T Consensus 213 ~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~--------------~~ 275 (386)
T 2qby_A 213 AFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE--------------RD 275 (386)
T ss_dssp HBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH--------------HH
T ss_pred hccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh--------------hc
Confidence 11222 345566777776 88873 333322211 1 1 4555555554421 23
Q ss_pred HHHHhhhcCChhhHhHHHhhhccCc----ccccHHHHHHHHH----hcCccccccchHHHHHHHHHHHHHHHhccccccc
Q 048566 188 SIELSFNHLKDEQLKKIFLLCSQME----TRILTLDLFKYSM----GLGIFKRVNKMEDARDKLYALVHELRNSCLLIED 259 (760)
Q Consensus 188 ~l~~sy~~L~~~~lk~cfl~~a~fp----~~~~~~~li~~w~----a~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~ 259 (760)
.+.-.+..++.++ +..+..++.+. ..+...++.+.+. ..| +.. -....+..+++.|...+++...
T Consensus 276 ~~~~~~~~l~~~~-~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g-~~~-----~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 276 RVRDIILTLPFHS-KLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG-VEA-----VTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HHHHHHHTSCHHH-HHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT-CCC-----CCHHHHHHHHHHHHHHTSEEEE
T ss_pred hHHHHHHcCCHHH-HHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC-CCC-----CCHHHHHHHHHHHHhCCCEEEE
Confidence 4556677888774 55555555321 1122332222211 111 110 0123455678899999999753
No 153
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.38 E-value=5.3e-08 Score=102.34 Aligned_cols=155 Identities=13% Similarity=0.113 Sum_probs=108.7
Q ss_pred CCCceEEEecCCCCCCC-hhhhhhh-----ccCCeeEecCCCCCC--cccc-ccccccceeecccCcccccc-----hhh
Q 048566 350 MKKLRVLDFTRMQFSSF-PSSIDLL-----VNLHTLCLDQSALGD--IAII-GKLKNLEVLSFLMSDIMQLP-----EEL 415 (760)
Q Consensus 350 l~~Lr~L~l~~~~~~~l-p~~i~~l-----~~L~~L~l~~~~l~~--~~~~-~~l~~L~~L~l~~~~i~~lp-----~~~ 415 (760)
+++|+.|++++|.+... ...+... .+|++|++++|.+.. +..+ ..+.+|++|++++|.+.... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46789999999998743 2334443 689999999999876 3333 45789999999999886432 223
Q ss_pred -hcCCCCCEEeccccccccccCc----ccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEecc
Q 048566 416 -GQLNKLRLLDLTNCFHLKVIAP----NLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKN 490 (760)
Q Consensus 416 -~~l~~L~~L~l~~~~~l~~~~~----~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 490 (760)
...++|++|++++| .+..... ..+...++|++|++++|.+...- .......+...++|+.|++++|.
T Consensus 151 ~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g-------~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 151 LHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEG-------LELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHH-------HHHHHHHGGGCSCCCEEECCSSC
T ss_pred HhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHH-------HHHHHHHHhcCCCcCeEECCCCC
Confidence 24688999999998 5654222 22477899999999999875211 11224567778899999999887
Q ss_pred CCCCCcch------hccccceeEEEecC
Q 048566 491 DSILPEGF------LARKLERFKISIGN 512 (760)
Q Consensus 491 ~~~~~~~~------~~~~L~~L~l~~~~ 512 (760)
+....... ..++|+.|+++.|.
T Consensus 223 i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 223 AGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 64322111 22678888888776
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.38 E-value=1.2e-05 Score=85.22 Aligned_cols=122 Identities=14% Similarity=0.133 Sum_probs=86.5
Q ss_pred CCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCCh-hhhhhhccCCeeEecCCCCCC--ccccccccccc
Q 048566 323 CPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFP-SSIDLLVNLHTLCLDQSALGD--IAIIGKLKNLE 399 (760)
Q Consensus 323 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~ 399 (760)
+..++.+.+.. .+. .++...|.++ +|+.+.+..+ +..++ ..+.+ .+|+.+.+.. .+.. ...|.+|.+|+
T Consensus 112 ~~~l~~i~ip~---~i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 112 LKGYNEIILPN---SVK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp CSSCSEEECCT---TCC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred cCCccEEEECC---ccC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCC
Confidence 34555565542 222 3666677775 6888888765 55554 34555 4688888875 4554 35678888999
Q ss_pred eeecccCcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEcccc
Q 048566 400 VLSFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNC 454 (760)
Q Consensus 400 ~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~ 454 (760)
.+++..+++..+|...-...+|+.+.+.. .+..++..++.++++|+.+.+..+
T Consensus 184 ~l~l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp EEECTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTT
T ss_pred eeecCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCC
Confidence 99998888888887655568899988875 478888888888888998888654
No 155
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.36 E-value=1e-05 Score=85.89 Aligned_cols=236 Identities=15% Similarity=0.081 Sum_probs=129.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccc--hhhHHHHHHHHHHHHc-CCcEEEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELRE--EVESSRASRIFERLRN-EKKILVVL 78 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~~-~~r~LlVl 78 (760)
+|+||||+|+++++....... ..++|++++...+...++..++..++..... ....+....+.+.+.. +++.+||+
T Consensus 53 ~G~GKTtl~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlil 131 (389)
T 1fnn_A 53 PGTGKTVTLRKLWELYKDKTT-ARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVL 131 (389)
T ss_dssp TTSSHHHHHHHHHHHHTTSCC-CEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHhhhcC-eeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 699999999999988753211 2577888888788889999999988654321 1233344445554432 47899999
Q ss_pred ECCCCc--cccccccccccCC-C---CCcEEEEeeCCH--------------------------HHHHHHHHHHhCC-Cc
Q 048566 79 DNIWKH--LDLETVGIPFGED-H---KGCKLLLTARDR--------------------------KEAWRLFKMMVGD-DV 125 (760)
Q Consensus 79 Ddv~~~--~~~~~l~~~~~~~-~---~gs~IlvTTR~~--------------------------~~a~~Lf~~~a~~-~~ 125 (760)
|+++.. ...+.+...+... . .+..||+||+.. ++..+++...+.. ..
T Consensus 132 DE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~ 211 (389)
T 1fnn_A 132 DDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA 211 (389)
T ss_dssp ETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC
T ss_pred ECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC
Confidence 999875 2233332222211 1 356677777654 5566666655411 00
Q ss_pred CChhhHHHHHHHHHHh---------CCcchHHH-HHHHHHc-----cC---ChHHHHHHHHHhcCCCCCCcCCchhHHHH
Q 048566 126 ENRELKSTAIDVARAC---------GGLPIALT-TVAMALR-----SK---SLHGWKVSLGELRTPSMDNFEGVSAETYS 187 (760)
Q Consensus 126 ~~~~~~~~~~~i~~~c---------~glPLai~-~~~~~l~-----~~---~~~~w~~~l~~l~~~~~~~~~~~~~~~~~ 187 (760)
...--.+....+++.+ +|.|-.+. .+-.... +. +.+....+.......
T Consensus 212 ~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~-------------- 277 (389)
T 1fnn_A 212 EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLFG-------------- 277 (389)
T ss_dssp TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSCC--------------
T ss_pred CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhhh--------------
Confidence 0011134567788888 67764333 2222211 11 334444444433211
Q ss_pred HHHHhhhcCChhhHhHHHhhhccCc---c--cccHHHHHHHHHh----cCccccccchHHHHHHHHHHHHHHHhcccccc
Q 048566 188 SIELSFNHLKDEQLKKIFLLCSQME---T--RILTLDLFKYSMG----LGIFKRVNKMEDARDKLYALVHELRNSCLLIE 258 (760)
Q Consensus 188 ~l~~sy~~L~~~~lk~cfl~~a~fp---~--~~~~~~li~~w~a----~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~ 258 (760)
.+.-.+..++.++ +.++..++.+. . ......+...+.. .|... -....+.+++++|..+++|..
T Consensus 278 ~~~~~l~~l~~~~-~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~~~~~l~~L~~~gli~~ 350 (389)
T 1fnn_A 278 ISEEVLIGLPLHE-KLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERP------RVHSQLWSYLNDLREKGIVET 350 (389)
T ss_dssp CCHHHHHHSCHHH-HHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCC------CCHHHHHHHHHHHHHTTSSEE
T ss_pred hHHHHHHcCCHHH-HHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCC------CCHHHHHHHHHHHHhCCCeEE
Confidence 1223456677763 66665555443 1 2333333333321 12110 012346677999999999986
Q ss_pred c
Q 048566 259 D 259 (760)
Q Consensus 259 ~ 259 (760)
.
T Consensus 351 ~ 351 (389)
T 1fnn_A 351 R 351 (389)
T ss_dssp E
T ss_pred e
Confidence 4
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.36 E-value=2.7e-07 Score=84.06 Aligned_cols=90 Identities=13% Similarity=0.213 Sum_probs=39.5
Q ss_pred CCcEEeeccCCCceeeecCCCCcccccccccchhhhccccccccccccccccc--ccCCccEEEEecCCCCCcccchhhh
Q 048566 589 QLKLLWVQNNPDIFCIVDSREMVACDAFPLLESLILHNLINMERVCIDRLKVE--SFNQLKNIEAYNCDKLSNIFWLSTT 666 (760)
Q Consensus 589 ~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~--~~~~L~~L~l~~C~~L~~l~~~~~~ 666 (760)
+|++|++++|. ++ .........+++|++|++++|..+++.....+... ..++|+.|+|++|+++++-.. ..+
T Consensus 62 ~L~~LDLs~~~-It----d~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L 135 (176)
T 3e4g_A 62 KIQAIDATDSC-IM----SIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IAL 135 (176)
T ss_dssp CEEEEEEESCC-CC----GGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHG
T ss_pred eEeEEeCcCCC-cc----HHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHH
Confidence 57777777774 32 11222333445555555555554444322111110 123455555555555444211 123
Q ss_pred hccCCCcEEEEecCCcch
Q 048566 667 KCLPRLERIAVVNCSKMK 684 (760)
Q Consensus 667 ~~l~~L~~L~l~~c~~L~ 684 (760)
..+++|++|++++|+.++
T Consensus 136 ~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GGCTTCCEEEEESCTTCC
T ss_pred hcCCCCCEEECCCCCCCC
Confidence 344455555555554444
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.33 E-value=6.4e-07 Score=93.65 Aligned_cols=90 Identities=18% Similarity=0.145 Sum_probs=67.4
Q ss_pred cccccCCchhhcCCCCceEEEecC-CCCCCCh-hhhhhhccCCeeEecCCCCCC-c-cccccccccceeecccCcccccc
Q 048566 337 SLEINIPGNFFIGMKKLRVLDFTR-MQFSSFP-SSIDLLVNLHTLCLDQSALGD-I-AIIGKLKNLEVLSFLMSDIMQLP 412 (760)
Q Consensus 337 ~~~~~~~~~~~~~l~~Lr~L~l~~-~~~~~lp-~~i~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~i~~lp 412 (760)
.+. .+|. +..+.+|++|+|++ |.+..+| ..++.+.+|++|+|++|.+.. + ..|++|.+|++|+|++|.+..+|
T Consensus 20 ~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 96 (347)
T 2ifg_A 20 ALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS 96 (347)
T ss_dssp CCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC
T ss_pred CCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC
Confidence 444 4776 57788888888885 8887775 567888888888888888776 3 45788888888888888888887
Q ss_pred hhhhcCCCCCEEecccc
Q 048566 413 EELGQLNKLRLLDLTNC 429 (760)
Q Consensus 413 ~~~~~l~~L~~L~l~~~ 429 (760)
..+....+|+.|++.+|
T Consensus 97 ~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 97 WKTVQGLSLQELVLSGN 113 (347)
T ss_dssp STTTCSCCCCEEECCSS
T ss_pred HHHcccCCceEEEeeCC
Confidence 65544444888888876
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.24 E-value=4.1e-07 Score=82.85 Aligned_cols=91 Identities=14% Similarity=0.264 Sum_probs=66.2
Q ss_pred cccchhhhcccccccccccccccccccCCccEEEEecCCCCCcccchhhhhc----cCCCcEEEEecCCcchhhhccccc
Q 048566 617 PLLESLILHNLINMERVCIDRLKVESFNQLKNIEAYNCDKLSNIFWLSTTKC----LPRLERIAVVNCSKMKEIFAIGEE 692 (760)
Q Consensus 617 p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~----l~~L~~L~l~~c~~L~~l~~~~~~ 692 (760)
.+|+.|++++|. ++...... ...+++|+.|++.+|..+++-.. ..+.. .++|++|+|++|+++++--..
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~--L~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~--- 133 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDH--MEGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNVTDKGII--- 133 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGG--GTTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTCCHHHHH---
T ss_pred ceEeEEeCcCCC-ccHHHHHH--hcCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcCCHHHHH---
Confidence 468899999887 66544433 34689999999999998887522 22333 247999999999888775322
Q ss_pred cccccccccccccCeeecCCCcccccc
Q 048566 693 VDNAIEKIEFAQLRSLSLGNLPEVTSF 719 (760)
Q Consensus 693 ~~~~~~~~~l~~L~~L~l~~c~~L~~~ 719 (760)
.+..+++|++|+|++||+++..
T Consensus 134 -----~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 134 -----ALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp -----HGGGCTTCCEEEEESCTTCCCH
T ss_pred -----HHhcCCCCCEEECCCCCCCCch
Confidence 4567899999999999988764
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.21 E-value=4.2e-05 Score=80.98 Aligned_cols=146 Identities=10% Similarity=0.158 Sum_probs=106.3
Q ss_pred CCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCCh-hhhhhhccCCeeEecCCCCCC-cccccccccccee
Q 048566 324 PNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFP-SSIDLLVNLHTLCLDQSALGD-IAIIGKLKNLEVL 401 (760)
Q Consensus 324 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L 401 (760)
.+|+.+.+.. + +. .++...|.++ +|+.+.+.. .+..++ ..+.++.+|+.+++..+.+.. +...-...+|+.+
T Consensus 135 ~~L~~i~l~~--~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l 208 (401)
T 4fdw_A 135 SQIAKVVLNE--G-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEV 208 (401)
T ss_dssp CCCSEEECCT--T-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEE
T ss_pred CCccEEEeCC--C-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEE
Confidence 3788888863 2 33 4777778775 699999986 566553 578889999999999988877 3333336889999
Q ss_pred ecccCcccccc-hhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCC
Q 048566 402 SFLMSDIMQLP-EELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPR 480 (760)
Q Consensus 402 ~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 480 (760)
.+.. ++..++ ..+.++++|+.+++.. .+..++..++.+ .+|+.+.+..+-. ......+.++++
T Consensus 209 ~lp~-~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp~~i~------------~I~~~aF~~c~~ 272 (401)
T 4fdw_A 209 LLPV-TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLPNGVT------------NIASRAFYYCPE 272 (401)
T ss_dssp ECCT-TCCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEETTCC------------EECTTTTTTCTT
T ss_pred EeCC-chheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCccEEEeCCCcc------------EEChhHhhCCCC
Confidence 9975 466665 4577889999999987 477788777777 7899998854321 112456778889
Q ss_pred CCEEEEEeccC
Q 048566 481 LTTLEIDVKND 491 (760)
Q Consensus 481 L~~L~l~~~~~ 491 (760)
|+.+.+..+..
T Consensus 273 L~~l~l~~~~~ 283 (401)
T 4fdw_A 273 LAEVTTYGSTF 283 (401)
T ss_dssp CCEEEEESSCC
T ss_pred CCEEEeCCccc
Confidence 99998876543
No 160
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.17 E-value=5.6e-06 Score=81.47 Aligned_cols=84 Identities=12% Similarity=0.116 Sum_probs=57.2
Q ss_pred CCcEEEEEECCCCc--cccccccccccCCCCCcEEEEeeCCH---------------------HHHHHHHHHHhCCCcCC
Q 048566 71 EKKILVVLDNIWKH--LDLETVGIPFGEDHKGCKLLLTARDR---------------------KEAWRLFKMMVGDDVEN 127 (760)
Q Consensus 71 ~~r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~---------------------~~a~~Lf~~~a~~~~~~ 127 (760)
+++.+||+||++.. +.++.+...+.....+.++|+||+.. ++..+++...+.....
T Consensus 125 ~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~- 203 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI- 203 (250)
T ss_dssp SSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC-
T ss_pred CCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC-
Confidence 46899999999764 34555555554555678899998775 7788888776621111
Q ss_pred hhhHHHHHHHHHHhCCcchHHHHHHHHH
Q 048566 128 RELKSTAIDVARACGGLPIALTTVAMAL 155 (760)
Q Consensus 128 ~~~~~~~~~i~~~c~glPLai~~~~~~l 155 (760)
.--.+..+.|++.++|.|..+..+...+
T Consensus 204 ~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 204 AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1112457789999999999887766543
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.15 E-value=7e-05 Score=79.48 Aligned_cols=123 Identities=13% Similarity=0.187 Sum_probs=56.9
Q ss_pred CCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCCh-hhhhhhccCCeeEecCCCCCC--ccccccccc
Q 048566 321 LECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFP-SSIDLLVNLHTLCLDQSALGD--IAIIGKLKN 397 (760)
Q Consensus 321 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~ 397 (760)
.+|.+|+.+.+.. .+. .+....|.++.+|+.+++..+ ++.++ ..+..+..|+.+.+..+ +.. ...+.++..
T Consensus 68 ~~c~~L~~i~lp~---~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 68 QGCRKVTEIKIPS---TVR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF 141 (394)
T ss_dssp TTCTTEEEEECCT---TCC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred hCCCCceEEEeCC---Ccc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence 3566677666642 222 355666667777777766543 33332 34455555555544332 111 112222222
Q ss_pred cceeecccCccccc-chhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccc
Q 048566 398 LEVLSFLMSDIMQL-PEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGN 453 (760)
Q Consensus 398 L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~ 453 (760)
+...... .+..+ ...+.++.+|+.+.+.+ .+..++...+.++++|+.+.+..
T Consensus 142 ~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 142 KEITIPE--GVTVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp SEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCT
T ss_pred cccccCc--cccccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCC
Confidence 2111111 11111 12345556666666654 24445555555566666665543
No 162
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.10 E-value=1.7e-06 Score=90.08 Aligned_cols=57 Identities=26% Similarity=0.183 Sum_probs=26.8
Q ss_pred hhcCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCC--ccccc--cccccceeecc
Q 048566 346 FFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGD--IAIIG--KLKNLEVLSFL 404 (760)
Q Consensus 346 ~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~--~~~~~--~l~~L~~L~l~ 404 (760)
++..+++|+.|+++++.-..++. + .+++|+.|++..|.+.. ...+. .+++|++|+|+
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 34455556666665542122332 2 24555555555555433 22232 45555555553
No 163
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.08 E-value=1.7e-05 Score=76.62 Aligned_cols=131 Identities=15% Similarity=0.118 Sum_probs=75.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+|||++|+++++.......-...+.++.+.......+...+....... ....+++.+||+||+
T Consensus 47 ~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~vliiDe~ 111 (226)
T 2chg_A 47 PGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTA---------------PIGGAPFKIIFLDEA 111 (226)
T ss_dssp TTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSC---------------CSTTCSCEEEEEETG
T ss_pred CCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhccc---------------CCCccCceEEEEeCh
Confidence 69999999999998864322112344555544433332222211111100 011247899999999
Q ss_pred CCc--cccccccccccCCCCCcEEEEeeCCH---------------------HHHHHHHHHHh---CCCcCChhhHHHHH
Q 048566 82 WKH--LDLETVGIPFGEDHKGCKLLLTARDR---------------------KEAWRLFKMMV---GDDVENRELKSTAI 135 (760)
Q Consensus 82 ~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~---------------------~~a~~Lf~~~a---~~~~~~~~~~~~~~ 135 (760)
+.. ...+.+...+.....+.++|+||+.. ++..+++...+ +.. .+ .+..+
T Consensus 112 ~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~-~~---~~~~~ 187 (226)
T 2chg_A 112 DALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK-IT---EDGLE 187 (226)
T ss_dssp GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-BC---HHHHH
T ss_pred hhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCC-CC---HHHHH
Confidence 875 23444544444445677899998875 66667776655 211 11 24466
Q ss_pred HHHHHhCCcchHHHHH
Q 048566 136 DVARACGGLPIALTTV 151 (760)
Q Consensus 136 ~i~~~c~glPLai~~~ 151 (760)
.+++.++|.|..+..+
T Consensus 188 ~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 188 ALIYISGGDFRKAINA 203 (226)
T ss_dssp HHHHHHTTCHHHHHHH
T ss_pred HHHHHcCCCHHHHHHH
Confidence 7778888888754443
No 164
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.88 E-value=6.7e-06 Score=76.92 Aligned_cols=110 Identities=13% Similarity=0.075 Sum_probs=69.3
Q ss_pred hhcCCCCceEEEecCC-CCC-----CChhhhhhhccCCeeEecCCCCCC--c----cccccccccceeecccCcccc---
Q 048566 346 FFIGMKKLRVLDFTRM-QFS-----SFPSSIDLLVNLHTLCLDQSALGD--I----AIIGKLKNLEVLSFLMSDIMQ--- 410 (760)
Q Consensus 346 ~~~~l~~Lr~L~l~~~-~~~-----~lp~~i~~l~~L~~L~l~~~~l~~--~----~~~~~l~~L~~L~l~~~~i~~--- 410 (760)
++...+.|+.|+|++| .+. .+...+...++|++|+|++|.+.+ . ..+...++|++|++++|.|..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4566777888888887 665 344555666778888888887765 1 234445677788888776653
Q ss_pred --cchhhhcCCCCCEEec--cccccccccC----cccccCCCCCCEEEcccccc
Q 048566 411 --LPEELGQLNKLRLLDL--TNCFHLKVIA----PNLISSLTRLEELYMGNCFI 456 (760)
Q Consensus 411 --lp~~~~~l~~L~~L~l--~~~~~l~~~~----~~~i~~l~~L~~L~l~~~~~ 456 (760)
+...+...++|++|++ ++| .+.... ...+...++|++|++++|.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 4555666677777777 555 343311 11234456777777776654
No 165
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.88 E-value=2.8e-05 Score=80.79 Aligned_cols=139 Identities=18% Similarity=0.134 Sum_probs=86.6
Q ss_pred CChhhhhhhccCCeeEecCCCCCCccccccccccceeecccCccccc-chhhh--cCCCCCEEecccccc-------ccc
Q 048566 365 SFPSSIDLLVNLHTLCLDQSALGDIAIIGKLKNLEVLSFLMSDIMQL-PEELG--QLNKLRLLDLTNCFH-------LKV 434 (760)
Q Consensus 365 ~lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~i~~l-p~~~~--~l~~L~~L~l~~~~~-------l~~ 434 (760)
.+...+..+++|+.|++++|.-..++.+. +.+|++|++..|.+..- ...+. .+++|++|+++.+.. +..
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred CHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 46667788899999999988411222243 88999999998876521 22333 789999999863211 111
Q ss_pred cCccc-ccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEeccCCC-----CCcc-hhccccceeE
Q 048566 435 IAPNL-ISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDSI-----LPEG-FLARKLERFK 507 (760)
Q Consensus 435 ~~~~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~-~~~~~L~~L~ 507 (760)
+.+.. ...+++|++|++.+|.+...... .+.....+++|+.|+++.+.... +... ..+++|+.|+
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~--------~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~ 313 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVE--------MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFIN 313 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHH--------HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEE
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHH--------HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEE
Confidence 11110 13578999999998877532210 11222357889999998765433 1111 2347788888
Q ss_pred EEecC
Q 048566 508 ISIGN 512 (760)
Q Consensus 508 l~~~~ 512 (760)
++.|.
T Consensus 314 L~~n~ 318 (362)
T 2ra8_A 314 MKYNY 318 (362)
T ss_dssp CCSBB
T ss_pred CCCCc
Confidence 87654
No 166
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.84 E-value=5.4e-05 Score=77.94 Aligned_cols=44 Identities=11% Similarity=-0.053 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhCCCcCChhhHHHHHHHHHHhCCcchHHHHHHHHH
Q 048566 111 KEAWRLFKMMVGDDVENRELKSTAIDVARACGGLPIALTTVAMAL 155 (760)
Q Consensus 111 ~~a~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 155 (760)
++..+++...+..... .--.+....++++++|.|-.+..+...+
T Consensus 171 ~e~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 171 EELAQGVMRDARLLGV-RITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp HHHHHHHHHHHHTTTC-CCCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 6777777776622111 1113567788999999998777665544
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.83 E-value=0.00038 Score=73.73 Aligned_cols=317 Identities=16% Similarity=0.125 Sum_probs=170.7
Q ss_pred ccceEEEeecCCCCCCCC--CCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCC-hhhhhhhccCCe
Q 048566 302 RKCKAITLRYDSNRHFPE--GLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSF-PSSIDLLVNLHT 378 (760)
Q Consensus 302 ~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~ 378 (760)
.+++.+.+..+. ..+.+ ..+|++|+.+.+.. + +. .++...|.++..|+.+.+..+ +..+ ...+.++..+..
T Consensus 71 ~~L~~i~lp~~i-~~I~~~aF~~c~~L~~i~lp~--~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~ 144 (394)
T 4fs7_A 71 RKVTEIKIPSTV-REIGEFAFENCSKLEIINIPD--S-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEI 144 (394)
T ss_dssp TTEEEEECCTTC-CEECTTTTTTCTTCCEECCCT--T-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEE
T ss_pred CCceEEEeCCCc-cCcchhHhhCCCCCcEEEeCC--C-ce-EccchhhcccccchhhcccCc-eeeecceeeeccccccc
Confidence 456777776433 45544 34899999999963 2 32 477788899999988777644 2322 233444433333
Q ss_pred eEecCCCCCCccccccccccceeecccCcccccc-hhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccc
Q 048566 379 LCLDQSALGDIAIIGKLKNLEVLSFLMSDIMQLP-EELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIE 457 (760)
Q Consensus 379 L~l~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~ 457 (760)
........-....+.++.+|+.+.+..+ +..++ ..+.++.+|+.+.+.. .+..+....+.+...|+.+.+..+...
T Consensus 145 ~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~--~~~~I~~~~F~~~~~L~~i~~~~~~~~ 221 (394)
T 4fs7_A 145 TIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPR--NLKIIRDYCFAECILLENMEFPNSLYY 221 (394)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCT--TCCEECTTTTTTCTTCCBCCCCTTCCE
T ss_pred ccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCC--CceEeCchhhccccccceeecCCCceE
Confidence 3222222111345788899999998764 34454 3567788999998876 477777777888888888876654322
Q ss_pred hhhhhccccccCCChhhhcCCCCCCEEEEEeccCCCCCcch--hccccceeEEEecCCCCCCCccccccccCCCCccccc
Q 048566 458 WEVERANSKRSNASLDELMHLPRLTTLEIDVKNDSILPEGF--LARKLERFKISIGNESFMPPKCVRQDWFQSQPHFSIN 535 (760)
Q Consensus 458 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 535 (760)
- -.......+|+.+.+...- ..+.... ...+|+.+.+..+..
T Consensus 222 i-------------~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~---------------------- 265 (394)
T 4fs7_A 222 L-------------GDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKL---------------------- 265 (394)
T ss_dssp E-------------CTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTC----------------------
T ss_pred e-------------ehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcc----------------------
Confidence 0 0112233567766664221 1111111 224455544432210
Q ss_pred ccccccceeeeccCccccccccccCccceeEEEeccccCccccccccCccccCCCcEEeeccCCCceeeecCCCCccccc
Q 048566 536 SDRKSLRALKLKLDFMDICSMKLQGINNVECLWLDKLQGIGDVLFNLDTEGFSQLKLLWVQNNPDIFCIVDSREMVACDA 615 (760)
Q Consensus 536 ~~~~~l~~l~l~~~~~~l~~l~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 615 (760)
.+..-....+..+..+...... ........+.+|+.+.+.+ .++.|.+. ....
T Consensus 266 ----------------~i~~~~F~~~~~l~~~~~~~~~-----i~~~~F~~~~~L~~i~l~~--~i~~I~~~----aF~~ 318 (394)
T 4fs7_A 266 ----------------RIGGSLFYNCSGLKKVIYGSVI-----VPEKTFYGCSSLTEVKLLD--SVKFIGEE----AFES 318 (394)
T ss_dssp ----------------EECSCTTTTCTTCCEEEECSSE-----ECTTTTTTCTTCCEEEECT--TCCEECTT----TTTT
T ss_pred ----------------eeeccccccccccceeccCcee-----ecccccccccccccccccc--ccceechh----hhcC
Confidence 0110012222333333322210 1111234467777777743 45555211 2334
Q ss_pred ccccchhhhcccccccccccccccccccCCccEEEEecCCCCCcccchhhhhccCCCcEEEEecCCcchhhhcccccccc
Q 048566 616 FPLLESLILHNLINMERVCIDRLKVESFNQLKNIEAYNCDKLSNIFWLSTTKCLPRLERIAVVNCSKMKEIFAIGEEVDN 695 (760)
Q Consensus 616 ~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~ 695 (760)
+.+|+.+.|. .+++.+... .+..+.+|+.+.+.. +++.+.. ..+.++++|+++++.. +++.+.
T Consensus 319 c~~L~~i~lp--~~v~~I~~~--aF~~c~~L~~i~lp~--~l~~I~~-~aF~~C~~L~~i~lp~--~~~~~~-------- 381 (394)
T 4fs7_A 319 CTSLVSIDLP--YLVEEIGKR--SFRGCTSLSNINFPL--SLRKIGA-NAFQGCINLKKVELPK--RLEQYR-------- 381 (394)
T ss_dssp CTTCCEECCC--TTCCEECTT--TTTTCTTCCEECCCT--TCCEECT-TTBTTCTTCCEEEEEG--GGGGGG--------
T ss_pred CCCCCEEEeC--CcccEEhHH--hccCCCCCCEEEECc--cccEehH-HHhhCCCCCCEEEECC--CCEEhh--------
Confidence 5667777664 235555332 223466788777743 3666643 3567788899988864 344332
Q ss_pred ccccccccccCee
Q 048566 696 AIEKIEFAQLRSL 708 (760)
Q Consensus 696 ~~~~~~l~~L~~L 708 (760)
.....+++|+.+
T Consensus 382 -~~F~~c~~L~~I 393 (394)
T 4fs7_A 382 -YDFEDTTKFKWI 393 (394)
T ss_dssp -GGBCTTCEEEEE
T ss_pred -heecCCCCCcEE
Confidence 145566777665
No 168
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.67 E-value=0.0074 Score=63.69 Aligned_cols=19 Identities=21% Similarity=0.308 Sum_probs=10.4
Q ss_pred CCchhhcCCCCceEEEecC
Q 048566 342 IPGNFFIGMKKLRVLDFTR 360 (760)
Q Consensus 342 ~~~~~~~~l~~Lr~L~l~~ 360 (760)
+....|.++.+|+.+.+..
T Consensus 78 Ig~~AF~~C~~L~~i~~~~ 96 (394)
T 4gt6_A 78 IGSNAFYNCTSLKRVTIQD 96 (394)
T ss_dssp ECTTTTTTCTTCCEEEEGG
T ss_pred EhHHHhhCCccCceEeecC
Confidence 4445555555555555544
No 169
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.66 E-value=0.00013 Score=75.01 Aligned_cols=137 Identities=14% Similarity=0.096 Sum_probs=77.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+||||+|+++++..........+++++.+....... .+++++.+..... .+..+++.+||+||+
T Consensus 51 ~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~-------------~~~~~~~~viiiDe~ 116 (323)
T 1sxj_B 51 PGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDV-VRNQIKHFAQKKL-------------HLPPGKHKIVILDEA 116 (323)
T ss_dssp TTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHH-HHTHHHHHHHBCC-------------CCCTTCCEEEEEESG
T ss_pred CCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHH-HHHHHHHHHhccc-------------cCCCCCceEEEEECc
Confidence 79999999999999864221112345555544333221 1222222110000 000246899999999
Q ss_pred CCc--cccccccccccCCCCCcEEEEeeCCH---------------------HHHHHHHHHHhCCCcCChhhHHHHHHHH
Q 048566 82 WKH--LDLETVGIPFGEDHKGCKLLLTARDR---------------------KEAWRLFKMMVGDDVENRELKSTAIDVA 138 (760)
Q Consensus 82 ~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~---------------------~~a~~Lf~~~a~~~~~~~~~~~~~~~i~ 138 (760)
+.. ..++.+...+.....+.++|+||+.. ++..+++...+...... --.+....++
T Consensus 117 ~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~ 195 (323)
T 1sxj_B 117 DSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVK-YTNDGLEAII 195 (323)
T ss_dssp GGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHH
Confidence 874 34455554444445677888888775 67777777665210000 1124567899
Q ss_pred HHhCCcch-HHHHHHH
Q 048566 139 RACGGLPI-ALTTVAM 153 (760)
Q Consensus 139 ~~c~glPL-ai~~~~~ 153 (760)
+.++|.|. |+..+..
T Consensus 196 ~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 196 FTAEGDMRQAINNLQS 211 (323)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHH
Confidence 99999995 4444433
No 170
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.61 E-value=8.7e-05 Score=72.94 Aligned_cols=61 Identities=21% Similarity=0.237 Sum_probs=33.0
Q ss_pred CCCCceEEEecCCCCCCCh---hhhhhhccCCeeEecCCCCCCcccccccc--ccceeecccCccc
Q 048566 349 GMKKLRVLDFTRMQFSSFP---SSIDLLVNLHTLCLDQSALGDIAIIGKLK--NLEVLSFLMSDIM 409 (760)
Q Consensus 349 ~l~~Lr~L~l~~~~~~~lp---~~i~~l~~L~~L~l~~~~l~~~~~~~~l~--~L~~L~l~~~~i~ 409 (760)
++++|+.|+|++|.+..++ ..+..+++|++|+|++|.+..+..+..+. +|++|++++|.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCc
Confidence 4555666666666655432 44455666666666666655544444443 5555555555544
No 171
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.53 E-value=2.5e-05 Score=76.82 Aligned_cols=40 Identities=23% Similarity=0.299 Sum_probs=19.0
Q ss_pred hhccCCeeEecCCCCCCcc----ccccccccceeecccCccccc
Q 048566 372 LLVNLHTLCLDQSALGDIA----IIGKLKNLEVLSFLMSDIMQL 411 (760)
Q Consensus 372 ~l~~L~~L~l~~~~l~~~~----~~~~l~~L~~L~l~~~~i~~l 411 (760)
++++|+.|+|++|.+..++ .++.+++|++|+|++|.+..+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~ 211 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE 211 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc
Confidence 3455555555555554422 223445555555555544433
No 172
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.53 E-value=9.1e-05 Score=69.09 Aligned_cols=107 Identities=8% Similarity=0.092 Sum_probs=80.7
Q ss_pred CCCCccEEEeeccCCccccc---CCchhhcCCCCceEEEecCCCCC-----CChhhhhhhccCCeeEecCCCCCC-----
Q 048566 322 ECPNLEFLCISLKDSSLEIN---IPGNFFIGMKKLRVLDFTRMQFS-----SFPSSIDLLVNLHTLCLDQSALGD----- 388 (760)
Q Consensus 322 ~~~~Lr~L~l~~~~~~~~~~---~~~~~~~~l~~Lr~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~l~~----- 388 (760)
..+.|+.|+++.+. .+... .....+...++|++|+|++|.+. .+...+...++|++|+|++|.+.+
T Consensus 34 ~~~~L~~L~L~~n~-~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 34 NDPDLEEVNLNNIM-NIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TCTTCCEEECTTCT-TCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred cCCCCCEEEecCCC-CCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 56789999998430 33210 11233567889999999999987 345667777899999999999876
Q ss_pred -ccccccccccceeec--ccCcccc-----cchhhhcCCCCCEEecccc
Q 048566 389 -IAIIGKLKNLEVLSF--LMSDIMQ-----LPEELGQLNKLRLLDLTNC 429 (760)
Q Consensus 389 -~~~~~~l~~L~~L~l--~~~~i~~-----lp~~~~~l~~L~~L~l~~~ 429 (760)
...+...++|++|++ ++|.+.. +...+...++|++|++++|
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 245677789999999 8888763 5566777899999999987
No 173
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.35 E-value=0.0086 Score=63.18 Aligned_cols=110 Identities=13% Similarity=0.205 Sum_probs=80.2
Q ss_pred cCCchhhcCCC-CceEEEecCCCCCCC-hhhhhhhccCCeeEecCCC---CCCc--cccccccccceeecccCcccccc-
Q 048566 341 NIPGNFFIGMK-KLRVLDFTRMQFSSF-PSSIDLLVNLHTLCLDQSA---LGDI--AIIGKLKNLEVLSFLMSDIMQLP- 412 (760)
Q Consensus 341 ~~~~~~~~~l~-~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~---l~~~--~~~~~l~~L~~L~l~~~~i~~lp- 412 (760)
.+.+..|.+++ .|+.+.+..+ ++.+ ...+.++.+|+.+.+..+. ++.+ ..|..+.+|+.+.+..+ +..++
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence 46677788885 5999999864 5555 4568899999999998764 4443 45777888888777653 55554
Q ss_pred hhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEcccc
Q 048566 413 EELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNC 454 (760)
Q Consensus 413 ~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~ 454 (760)
..+..+.+|+.+.+.. .+..+....+....+|+.+.+..+
T Consensus 131 ~aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT
T ss_pred hhhhhhcccccccccc--eeeeecccceecccccccccccce
Confidence 3467788999998875 466677777888888998887654
No 174
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.35 E-value=0.00069 Score=69.61 Aligned_cols=134 Identities=10% Similarity=0.067 Sum_probs=73.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHH--HHcCCcEEEEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFER--LRNEKKILVVLD 79 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~--l~~~~r~LlVlD 79 (760)
+|+||||+|+++++.......-..++.++.+....... .++. ....... +..+++.+||+|
T Consensus 55 ~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~----------------~~~~~~~~~~~~~~~~vliiD 117 (327)
T 1iqp_A 55 PGVGKTTAALALARELFGENWRHNFLELNASDERGINV-IREK----------------VKEFARTKPIGGASFKIIFLD 117 (327)
T ss_dssp TTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHT-THHH----------------HHHHHHSCCGGGCSCEEEEEE
T ss_pred CCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHH-HHHH----------------HHHHHhhCCcCCCCCeEEEEe
Confidence 79999999999999864221101234444332111100 0000 0111000 111478899999
Q ss_pred CCCCc--cccccccccccCCCCCcEEEEeeCCH---------------------HHHHHHHHHHhCCCcCChhhHHHHHH
Q 048566 80 NIWKH--LDLETVGIPFGEDHKGCKLLLTARDR---------------------KEAWRLFKMMVGDDVENRELKSTAID 136 (760)
Q Consensus 80 dv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~---------------------~~a~~Lf~~~a~~~~~~~~~~~~~~~ 136 (760)
|++.. +..+.+...+.....+.++|+||... ++..+++...+..... .--.+....
T Consensus 118 e~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~~~~~~~~ 196 (327)
T 1iqp_A 118 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL-ELTEEGLQA 196 (327)
T ss_dssp TGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTC-EECHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCC-CCCHHHHHH
Confidence 99865 34455544444445677899988775 5666666665521110 011245677
Q ss_pred HHHHhCCcchHHHHHHH
Q 048566 137 VARACGGLPIALTTVAM 153 (760)
Q Consensus 137 i~~~c~glPLai~~~~~ 153 (760)
+++.++|.|..+..+..
T Consensus 197 l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 197 ILYIAEGDMRRAINILQ 213 (327)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHH
Confidence 88888998876544433
No 175
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.0019 Score=65.05 Aligned_cols=84 Identities=12% Similarity=0.133 Sum_probs=55.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcC---C-C-eEEEEEecCCCCHHHHHHHHHHHhCccccc-hhhHHHHHHHHHHH--HcCCc
Q 048566 2 GGIGKTTLVKKVARQAMEDKL---F-D-MVVFSEVSQIPDIKRIQQEIAEKLGLELRE-EVESSRASRIFERL--RNEKK 73 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~---F-~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~l--~~~~r 73 (760)
+|.|||++|++++++...... . + .++.|+.....+...++..|++++.+.... ....+.+..+++.+ ..+++
T Consensus 54 PGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~ 133 (318)
T 3te6_A 54 DDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRK 133 (318)
T ss_dssp CSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCE
T ss_pred CCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCc
Confidence 799999999999998753221 1 1 356777777778889999999999654211 11223344455543 23578
Q ss_pred EEEEEECCCCcc
Q 048566 74 ILVVLDNIWKHL 85 (760)
Q Consensus 74 ~LlVlDdv~~~~ 85 (760)
++||||.++...
T Consensus 134 ~ii~lDE~d~l~ 145 (318)
T 3te6_A 134 TLILIQNPENLL 145 (318)
T ss_dssp EEEEEECCSSSC
T ss_pred eEEEEecHHHhh
Confidence 999999998764
No 176
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.00 E-value=0.0086 Score=59.48 Aligned_cols=16 Identities=38% Similarity=0.495 Sum_probs=14.7
Q ss_pred CCCcHHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQA 17 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (760)
+|+|||++|+++++..
T Consensus 73 ~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 73 PHSGKTALAAKIAEES 88 (272)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHh
Confidence 6999999999999974
No 177
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.76 E-value=0.0047 Score=64.63 Aligned_cols=78 Identities=13% Similarity=0.123 Sum_probs=47.8
Q ss_pred CCcEEEEEECCCCc--cccccccccccCCCCCcEEEEeeCCH---------------------HHHHHHHHHHh---CCC
Q 048566 71 EKKILVVLDNIWKH--LDLETVGIPFGEDHKGCKLLLTARDR---------------------KEAWRLFKMMV---GDD 124 (760)
Q Consensus 71 ~~r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~---------------------~~a~~Lf~~~a---~~~ 124 (760)
+++.+||+||++.. ...+.+...+.....+..+|++|... ++..+++...+ +..
T Consensus 118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~ 197 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 (373)
T ss_dssp SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 46789999999764 23445544444444566778787655 55566665544 211
Q ss_pred cCChhhHHHHHHHHHHhCCcchHHHHHH
Q 048566 125 VENRELKSTAIDVARACGGLPIALTTVA 152 (760)
Q Consensus 125 ~~~~~~~~~~~~i~~~c~glPLai~~~~ 152 (760)
. . .+....+++.++|.|..+..+.
T Consensus 198 ~-~---~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 198 H-E---PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp B-C---HHHHHHHHHHSSSCHHHHHHHH
T ss_pred C-C---HHHHHHHHHHCCCCHHHHHHHH
Confidence 1 1 2345678888888887665543
No 178
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.67 E-value=0.0051 Score=62.70 Aligned_cols=92 Identities=15% Similarity=0.153 Sum_probs=50.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHH--HHcCCcEEEEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFER--LRNEKKILVVLD 79 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~--l~~~~r~LlVlD 79 (760)
+|+|||++|+++++.......-..++.++.+....... ..+........ +..+++.+||+|
T Consensus 47 ~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~vliiD 109 (319)
T 2chq_A 47 PGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDV-----------------VRHKIKEFARTAPIGGAPFKIIFLD 109 (319)
T ss_dssp SSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTT-----------------SSHHHHHHHHSCCSSSCCCEEEEEE
T ss_pred CCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHH-----------------HHHHHHHHHhcCCCCCCCceEEEEe
Confidence 69999999999998853211101233445443211100 00111111100 112468899999
Q ss_pred CCCCc--cccccccccccCCCCCcEEEEeeCCH
Q 048566 80 NIWKH--LDLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 80 dv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+++.. +..+.+...+.....+.++|+||...
T Consensus 110 e~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 142 (319)
T 2chq_A 110 EADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (319)
T ss_dssp TGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCG
T ss_pred CCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 99865 23455555555555677888888765
No 179
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.67 E-value=0.0013 Score=60.86 Aligned_cols=92 Identities=15% Similarity=0.164 Sum_probs=50.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+||||||+++++.......+. +++++ ..++...+......... . .+.+.+. +.-+|||||+
T Consensus 47 ~G~GKTtL~~~i~~~~~~~~g~~-~~~~~------~~~~~~~~~~~~~~~~~----~----~~~~~~~--~~~llilDE~ 109 (180)
T 3ec2_A 47 PGVGKTHLAVATLKAIYEKKGIR-GYFFD------TKDLIFRLKHLMDEGKD----T----KFLKTVL--NSPVLVLDDL 109 (180)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCCC-CCEEE------HHHHHHHHHHHHHHTCC----S----HHHHHHH--TCSEEEEETC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCe-EEEEE------HHHHHHHHHHHhcCchH----H----HHHHHhc--CCCEEEEeCC
Confidence 69999999999999876333332 34444 33444444433321111 1 2333343 5668999999
Q ss_pred CC--ccccc--cccccccC-CCCCcEEEEeeCCH
Q 048566 82 WK--HLDLE--TVGIPFGE-DHKGCKLLLTARDR 110 (760)
Q Consensus 82 ~~--~~~~~--~l~~~~~~-~~~gs~IlvTTR~~ 110 (760)
+. ...|. .+...+.. ...|..||+||...
T Consensus 110 ~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 110 GSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred CCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 83 22332 12111111 12466789998865
No 180
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.62 E-value=0.0065 Score=64.89 Aligned_cols=94 Identities=14% Similarity=0.285 Sum_probs=52.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+||||||+++++.......-..+++++... +..++...+... ....+.+.+. .+.-+|++||+
T Consensus 139 ~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~------~~~~~~~~~~~~--------~~~~~~~~~~-~~~~vL~IDEi 203 (440)
T 2z4s_A 139 VGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK------FLNDLVDSMKEG--------KLNEFREKYR-KKVDILLIDDV 203 (440)
T ss_dssp SSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH------HHHHHHHHHHTT--------CHHHHHHHHT-TTCSEEEEECG
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH------HHHHHHHHHHcc--------cHHHHHHHhc-CCCCEEEEeCc
Confidence 69999999999999875331112356666443 333343333211 0122333333 26779999999
Q ss_pred CCccc----cccccccccC-CCCCcEEEEeeCCH
Q 048566 82 WKHLD----LETVGIPFGE-DHKGCKLLLTARDR 110 (760)
Q Consensus 82 ~~~~~----~~~l~~~~~~-~~~gs~IlvTTR~~ 110 (760)
+.... .+.+...+.. ...|..||+||...
T Consensus 204 ~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 204 QFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp GGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred ccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 75431 1223222211 23467899999874
No 181
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.61 E-value=0.012 Score=57.94 Aligned_cols=63 Identities=24% Similarity=0.296 Sum_probs=34.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+|||++|+++++.... ..+.++.+.-.+. .... .......+.+......+.+|++|++
T Consensus 48 ~GtGKT~la~~la~~~~~-----~~~~~~~~~~~~~--------------~~~~-~~~~~~~~~~~a~~~~~~vl~iDei 107 (262)
T 2qz4_A 48 PGCGKTLLAKAVATEAQV-----PFLAMAGAEFVEV--------------IGGL-GAARVRSLFKEARARAPCIVYIDEI 107 (262)
T ss_dssp TTSSHHHHHHHHHHHHTC-----CEEEEETTTTSSS--------------STTH-HHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred CCCCHHHHHHHHHHHhCC-----CEEEechHHHHhh--------------ccCh-hHHHHHHHHHHHHhcCCeEEEEeCc
Confidence 799999999999987642 2344554432110 0001 1122233444443346799999999
Q ss_pred CCc
Q 048566 82 WKH 84 (760)
Q Consensus 82 ~~~ 84 (760)
+..
T Consensus 108 d~l 110 (262)
T 2qz4_A 108 DAV 110 (262)
T ss_dssp ---
T ss_pred chh
Confidence 864
No 182
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.50 E-value=0.011 Score=59.21 Aligned_cols=63 Identities=22% Similarity=0.247 Sum_probs=35.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+|||++|+++++.... ..+.++.+.-.. .... ........+.......++.+|++|++
T Consensus 60 ~GtGKT~la~~la~~~~~-----~~~~v~~~~~~~--------------~~~~-~~~~~~~~~~~~~~~~~~~vl~iDEi 119 (285)
T 3h4m_A 60 PGTGKTLLAKAVATETNA-----TFIRVVGSELVK--------------KFIG-EGASLVKDIFKLAKEKAPSIIFIDEI 119 (285)
T ss_dssp SSSSHHHHHHHHHHHTTC-----EEEEEEGGGGCC--------------CSTT-HHHHHHHHHHHHHHHTCSEEEEEETT
T ss_pred CCCcHHHHHHHHHHHhCC-----CEEEEehHHHHH--------------hccc-hHHHHHHHHHHHHHHcCCeEEEEECH
Confidence 799999999999987532 233343322111 0001 11222333444444457789999999
Q ss_pred CCc
Q 048566 82 WKH 84 (760)
Q Consensus 82 ~~~ 84 (760)
+..
T Consensus 120 d~l 122 (285)
T 3h4m_A 120 DAI 122 (285)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 183
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.49 E-value=0.12 Score=53.78 Aligned_cols=70 Identities=11% Similarity=0.064 Sum_probs=37.7
Q ss_pred ccCCccEEEEecCCCCCcccchhhhhccCCCcEEEEecCCcchhhhccccccccccccccccccCeeecCCCcccccccc
Q 048566 642 SFNQLKNIEAYNCDKLSNIFWLSTTKCLPRLERIAVVNCSKMKEIFAIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCR 721 (760)
Q Consensus 642 ~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~ 721 (760)
.+++|+.+.+.+ ..++.+.. ..+.++.+|+.+.+.+ +++.+... ...++++|+.+.+.+ +++.|..
T Consensus 284 ~c~~L~~i~l~~-~~i~~I~~-~aF~~c~~L~~i~lp~--~l~~I~~~--------aF~~C~~L~~i~ip~--~v~~I~~ 349 (379)
T 4h09_A 284 GCSNLTKVVMDN-SAIETLEP-RVFMDCVKLSSVTLPT--ALKTIQVY--------AFKNCKALSTISYPK--SITLIES 349 (379)
T ss_dssp TCTTCCEEEECC-TTCCEECT-TTTTTCTTCCEEECCT--TCCEECTT--------TTTTCTTCCCCCCCT--TCCEECT
T ss_pred cccccccccccc-cccceehh-hhhcCCCCCCEEEcCc--cccEEHHH--------HhhCCCCCCEEEECC--ccCEEch
Confidence 456677776643 23444432 3445667777777742 34444321 445566677666632 3555555
Q ss_pred CCCC
Q 048566 722 EVKT 725 (760)
Q Consensus 722 ~~~~ 725 (760)
....
T Consensus 350 ~aF~ 353 (379)
T 4h09_A 350 GAFE 353 (379)
T ss_dssp TTTT
T ss_pred hHhh
Confidence 4444
No 184
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.38 E-value=0.0056 Score=56.95 Aligned_cols=70 Identities=16% Similarity=0.294 Sum_probs=37.8
Q ss_pred CCCcHHHHHHHHHHHHhhhc-----CCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHH-HcCCcEE
Q 048566 2 GGIGKTTLVKKVARQAMEDK-----LFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERL-RNEKKIL 75 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~-----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l-~~~~r~L 75 (760)
+|+|||++|+++++...... ....+++++++.. ................+.+.+ ..+++.+
T Consensus 52 ~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 118 (195)
T 1jbk_A 52 PGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL-------------VAGAKYRGEFEERLKGVLNDLAKQEGNVI 118 (195)
T ss_dssp TTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHH-------------HTTTCSHHHHHHHHHHHHHHHHHSTTTEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHH-------------hccCCccccHHHHHHHHHHHHhhcCCCeE
Confidence 79999999999999864311 1223556554211 000000011122233333333 2357889
Q ss_pred EEEECCCCc
Q 048566 76 VVLDNIWKH 84 (760)
Q Consensus 76 lVlDdv~~~ 84 (760)
||+||++..
T Consensus 119 l~iDe~~~l 127 (195)
T 1jbk_A 119 LFIDELHTM 127 (195)
T ss_dssp EEEETGGGG
T ss_pred EEEeCHHHH
Confidence 999999764
No 185
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.34 E-value=0.0021 Score=60.74 Aligned_cols=91 Identities=14% Similarity=0.113 Sum_probs=49.5
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+|||+||+++++....+ ...++|++++ .+...+...+.. ... ..+.+.+.. . -+||+||+
T Consensus 63 ~GtGKT~la~~i~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~----~~~----~~~~~~~~~-~-~~lilDei 124 (202)
T 2w58_A 63 FGVGKTYLLAAIANELAKR--NVSSLIVYVP------ELFRELKHSLQD----QTM----NEKLDYIKK-V-PVLMLDDL 124 (202)
T ss_dssp TTSSHHHHHHHHHHHHHTT--TCCEEEEEHH------HHHHHHHHC-------CCC----HHHHHHHHH-S-SEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHc--CCeEEEEEhH------HHHHHHHHHhcc----chH----HHHHHHhcC-C-CEEEEcCC
Confidence 6999999999999987633 3456777654 334444332211 111 223334432 2 39999999
Q ss_pred CCc--ccccc--ccc-cccC-CCCCcEEEEeeCCH
Q 048566 82 WKH--LDLET--VGI-PFGE-DHKGCKLLLTARDR 110 (760)
Q Consensus 82 ~~~--~~~~~--l~~-~~~~-~~~gs~IlvTTR~~ 110 (760)
+.. ..|.. +.. .+.. ...+.+||+||...
T Consensus 125 ~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 125 GAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp CCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 653 33322 221 1111 12355688888865
No 186
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.30 E-value=0.019 Score=58.89 Aligned_cols=40 Identities=10% Similarity=0.014 Sum_probs=26.8
Q ss_pred CCcEEEEEECCCCcc--ccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKHL--DLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+++-++|+|+++... ..+.+...+.....+..+|++|.+.
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 467889999998753 3445555555445567777777776
No 187
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.27 E-value=0.0016 Score=63.47 Aligned_cols=30 Identities=17% Similarity=0.116 Sum_probs=23.3
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ 33 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~ 33 (760)
+|+||||+|+++++..... ...++|++++.
T Consensus 61 ~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~ 90 (242)
T 3bos_A 61 VKSGRTHLIHAACARANEL--ERRSFYIPLGI 90 (242)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEEGGG
T ss_pred CCCCHHHHHHHHHHHHHHc--CCeEEEEEHHH
Confidence 6999999999999987643 34567887654
No 188
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.25 E-value=0.029 Score=57.18 Aligned_cols=63 Identities=22% Similarity=0.275 Sum_probs=36.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+|||++|+++++.... ..+.++.+. +.... .. ........+.......++.+|++|++
T Consensus 60 pGtGKT~la~aia~~~~~-----~~~~v~~~~----------l~~~~----~g-~~~~~~~~~f~~a~~~~~~vl~iDEi 119 (322)
T 3eie_A 60 PGTGKSYLAKAVATEANS-----TFFSVSSSD----------LVSKW----MG-ESEKLVKQLFAMARENKPSIIFIDQV 119 (322)
T ss_dssp SSSCHHHHHHHHHHHHTC-----EEEEEEHHH----------HHTTT----GG-GHHHHHHHHHHHHHHTSSEEEEEECG
T ss_pred CCCcHHHHHHHHHHHHCC-----CEEEEchHH----------Hhhcc----cc-hHHHHHHHHHHHHHhcCCeEEEechh
Confidence 799999999999988542 123333321 11111 01 12233444555554457789999999
Q ss_pred CCc
Q 048566 82 WKH 84 (760)
Q Consensus 82 ~~~ 84 (760)
+..
T Consensus 120 d~l 122 (322)
T 3eie_A 120 DAL 122 (322)
T ss_dssp GGG
T ss_pred hhh
Confidence 854
No 189
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.20 E-value=0.056 Score=54.96 Aligned_cols=64 Identities=23% Similarity=0.289 Sum_probs=37.3
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+|||+||+++++.... ...+.++.+.-.+ ....+ .......+.+.....++.+|++|++
T Consensus 54 pGtGKT~la~ala~~~~~----~~~~~i~~~~l~~--------------~~~g~-~~~~~~~lf~~a~~~~~~vl~iDEi 114 (322)
T 1xwi_A 54 PGTGKSYLAKAVATEANN----STFFSISSSDLVS--------------KWLGE-SEKLVKNLFQLARENKPSIIFIDEI 114 (322)
T ss_dssp SSSCHHHHHHHHHHHTTS----CEEEEEECCSSCC--------------SSCCS-CHHHHHHHHHHHHHTSSEEEEEETT
T ss_pred CCccHHHHHHHHHHHcCC----CcEEEEEhHHHHh--------------hhhhH-HHHHHHHHHHHHHhcCCcEEEeecH
Confidence 699999999999987521 1233444432211 00011 1223344444444457899999999
Q ss_pred CCc
Q 048566 82 WKH 84 (760)
Q Consensus 82 ~~~ 84 (760)
+..
T Consensus 115 d~l 117 (322)
T 1xwi_A 115 DSL 117 (322)
T ss_dssp TGG
T ss_pred HHh
Confidence 865
No 190
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.15 E-value=0.0094 Score=60.47 Aligned_cols=19 Identities=37% Similarity=0.309 Sum_probs=16.4
Q ss_pred CCCcHHHHHHHHHHHHhhh
Q 048566 2 GGIGKTTLVKKVARQAMED 20 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~ 20 (760)
+|+|||++|+++++.....
T Consensus 76 ~GtGKT~la~~la~~l~~~ 94 (309)
T 3syl_A 76 PGTGKTTVALKMAGLLHRL 94 (309)
T ss_dssp TTSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhc
Confidence 7999999999999887543
No 191
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.99 E-value=0.043 Score=56.73 Aligned_cols=62 Identities=21% Similarity=0.219 Sum_probs=35.3
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+|||++|+++++... ...+.++.+.-... .... .......+.......++.+|++|++
T Consensus 126 pGtGKT~la~aia~~~~-----~~~~~i~~~~l~~~--------------~~g~-~~~~~~~~~~~a~~~~~~vl~iDEi 185 (357)
T 3d8b_A 126 PGTGKTLIGKCIASQSG-----ATFFSISASSLTSK--------------WVGE-GEKMVRALFAVARCQQPAVIFIDEI 185 (357)
T ss_dssp TTSSHHHHHHHHHHHTT-----CEEEEEEGGGGCCS--------------STTH-HHHHHHHHHHHHHHTCSEEEEEETH
T ss_pred CCCCHHHHHHHHHHHcC-----CeEEEEehHHhhcc--------------ccch-HHHHHHHHHHHHHhcCCeEEEEeCc
Confidence 69999999999998753 12445555432110 0000 1122233334333357899999999
Q ss_pred CC
Q 048566 82 WK 83 (760)
Q Consensus 82 ~~ 83 (760)
+.
T Consensus 186 d~ 187 (357)
T 3d8b_A 186 DS 187 (357)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 192
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.97 E-value=0.019 Score=59.44 Aligned_cols=142 Identities=10% Similarity=0.045 Sum_probs=67.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCC-eEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEEC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFD-MVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDN 80 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDd 80 (760)
+|+||||+|+.+++.......+. .++.++.+.......+ ++.+..+........... .......+++-+|++|+
T Consensus 67 ~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~vliiDE 141 (353)
T 1sxj_D 67 PGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REKVKNFARLTVSKPSKH----DLENYPCPPYKIIILDE 141 (353)
T ss_dssp TTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTHHHHHHHSCCCCCCTT----HHHHSCCCSCEEEEETT
T ss_pred CCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHHHHHHhhhcccccchh----hcccCCCCCceEEEEEC
Confidence 69999999999998854211121 2444554443333222 222221110000000000 00011113567999999
Q ss_pred CCCcc--ccccccccccCCCCCcEEEEeeCCH---------------------HHHHHHHHHHhCCCcCChhhHHHHHHH
Q 048566 81 IWKHL--DLETVGIPFGEDHKGCKLLLTARDR---------------------KEAWRLFKMMVGDDVENRELKSTAIDV 137 (760)
Q Consensus 81 v~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~---------------------~~a~~Lf~~~a~~~~~~~~~~~~~~~i 137 (760)
++... ..+.+...+.......++|++|... ++..+.+...+..... .--++..+.|
T Consensus 142 ~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~-~i~~~~l~~l 220 (353)
T 1sxj_D 142 ADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENV-KCDDGVLERI 220 (353)
T ss_dssp GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTC-CCCHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCC-CCCHHHHHHH
Confidence 87642 2334433333334456788877655 4444555544411110 0012456677
Q ss_pred HHHhCCcchHHH
Q 048566 138 ARACGGLPIALT 149 (760)
Q Consensus 138 ~~~c~glPLai~ 149 (760)
++.++|.|-.+.
T Consensus 221 ~~~~~G~~r~~~ 232 (353)
T 1sxj_D 221 LDISAGDLRRGI 232 (353)
T ss_dssp HHHTSSCHHHHH
T ss_pred HHHcCCCHHHHH
Confidence 777777776543
No 193
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.94 E-value=0.056 Score=57.53 Aligned_cols=123 Identities=16% Similarity=0.175 Sum_probs=62.9
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEEC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDN 80 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDd 80 (760)
+|+||||+|+.+++..... ++.++... .... .+.++ .........+++.+|++|+
T Consensus 59 pGtGKTtlAr~ia~~~~~~-------f~~l~a~~~~~~~-ir~~~----------------~~a~~~~~~~~~~iLfIDE 114 (447)
T 3pvs_A 59 PGTGKTTLAEVIARYANAD-------VERISAVTSGVKE-IREAI----------------ERARQNRNAGRRTILFVDE 114 (447)
T ss_dssp TTSSHHHHHHHHHHHTTCE-------EEEEETTTCCHHH-HHHHH----------------HHHHHHHHTTCCEEEEEET
T ss_pred CCCcHHHHHHHHHHHhCCC-------eEEEEeccCCHHH-HHHHH----------------HHHHHhhhcCCCcEEEEeC
Confidence 6999999999999876421 23332211 2221 11111 1111122235889999999
Q ss_pred CCCcc--ccccccccccCCCCCcEEEEeeCCH----------------------HHHHHHHHHHhCC-C-----cCChhh
Q 048566 81 IWKHL--DLETVGIPFGEDHKGCKLLLTARDR----------------------KEAWRLFKMMVGD-D-----VENREL 130 (760)
Q Consensus 81 v~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~----------------------~~a~~Lf~~~a~~-~-----~~~~~~ 130 (760)
++... +.+.|...+.. +.-.-|..||.+. ++-.+++.+.+.. . ....--
T Consensus 115 I~~l~~~~q~~LL~~le~-~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~ 193 (447)
T 3pvs_A 115 VHRFNKSQQDAFLPHIED-GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLP 193 (447)
T ss_dssp TTCC------CCHHHHHT-TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECC
T ss_pred hhhhCHHHHHHHHHHHhc-CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCC
Confidence 98652 34444443333 2222233355554 5666676665521 0 111112
Q ss_pred HHHHHHHHHHhCCcchHHH
Q 048566 131 KSTAIDVARACGGLPIALT 149 (760)
Q Consensus 131 ~~~~~~i~~~c~glPLai~ 149 (760)
.+....+++.++|.+-.+.
T Consensus 194 ~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 194 DETRRAIAELVNGDARRAL 212 (447)
T ss_dssp HHHHHHHHHHHCSCHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHH
Confidence 3456778888888765443
No 194
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.69 E-value=0.026 Score=57.61 Aligned_cols=87 Identities=15% Similarity=0.208 Sum_probs=47.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+|||++|+++++... ..++.++.+.. . ....++.+........ ..+++-+||+|++
T Consensus 57 ~G~GKT~la~~la~~l~-----~~~~~i~~~~~-~-~~~i~~~~~~~~~~~~---------------~~~~~~vliiDEi 114 (324)
T 3u61_B 57 PGTGKTTVAKALCHDVN-----ADMMFVNGSDC-K-IDFVRGPLTNFASAAS---------------FDGRQKVIVIDEF 114 (324)
T ss_dssp TTSSHHHHHHHHHHHTT-----EEEEEEETTTC-C-HHHHHTHHHHHHHBCC---------------CSSCEEEEEEESC
T ss_pred CCCCHHHHHHHHHHHhC-----CCEEEEccccc-C-HHHHHHHHHHHHhhcc---------------cCCCCeEEEEECC
Confidence 69999999999988753 12455665442 2 2222221111100000 0137889999999
Q ss_pred CCcc---ccccccccccCCCCCcEEEEeeCCH
Q 048566 82 WKHL---DLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 82 ~~~~---~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+... ..+.+...+.....+.++|+||...
T Consensus 115 ~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~ 146 (324)
T 3u61_B 115 DRSGLAESQRHLRSFMEAYSSNCSIIITANNI 146 (324)
T ss_dssp CCGGGHHHHHHHHHHHHHHGGGCEEEEEESSG
T ss_pred cccCcHHHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence 8753 3333433333223456788888775
No 195
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.66 E-value=0.093 Score=54.27 Aligned_cols=63 Identities=21% Similarity=0.244 Sum_probs=39.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|.|||.||+++++..... .+.|+.+.-.+ ....+ .+..+..++..-+...+++|++|++
T Consensus 191 PGTGKTllAkAiA~e~~~~-----f~~v~~s~l~s--------------k~vGe-se~~vr~lF~~Ar~~aP~IIFiDEi 250 (405)
T 4b4t_J 191 PGTGKTLLARAVAHHTDCK-----FIRVSGAELVQ--------------KYIGE-GSRMVRELFVMAREHAPSIIFMDEI 250 (405)
T ss_dssp SSSSHHHHHHHHHHHHTCE-----EEEEEGGGGSC--------------SSTTH-HHHHHHHHHHHHHHTCSEEEEEESS
T ss_pred CCCCHHHHHHHHHHhhCCC-----ceEEEhHHhhc--------------cccch-HHHHHHHHHHHHHHhCCceEeeecc
Confidence 7999999999999987532 34444433211 11111 1233445555555458899999999
Q ss_pred CCc
Q 048566 82 WKH 84 (760)
Q Consensus 82 ~~~ 84 (760)
+..
T Consensus 251 Dai 253 (405)
T 4b4t_J 251 DSI 253 (405)
T ss_dssp SCC
T ss_pred hhh
Confidence 864
No 196
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.59 E-value=0.063 Score=55.40 Aligned_cols=63 Identities=24% Similarity=0.298 Sum_probs=36.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+|||+||+++++.... ..+.++.+ .+ .... ... .......+.......++.+|++|++
T Consensus 93 pGtGKT~la~ala~~~~~-----~~~~v~~~------~l----~~~~----~g~-~~~~~~~~f~~a~~~~~~vl~iDEi 152 (355)
T 2qp9_X 93 PGTGKSYLAKAVATEANS-----TFFSVSSS------DL----VSKW----MGE-SEKLVKQLFAMARENKPSIIFIDQV 152 (355)
T ss_dssp TTSCHHHHHHHHHHHHTC-----EEEEEEHH------HH----HSCC--------CHHHHHHHHHHHHHTSSEEEEEECG
T ss_pred CCCcHHHHHHHHHHHhCC-----CEEEeeHH------HH----hhhh----cch-HHHHHHHHHHHHHHcCCeEEEEech
Confidence 699999999999998641 22334332 11 1111 011 1223344444444457899999999
Q ss_pred CCc
Q 048566 82 WKH 84 (760)
Q Consensus 82 ~~~ 84 (760)
+..
T Consensus 153 d~l 155 (355)
T 2qp9_X 153 DAL 155 (355)
T ss_dssp GGG
T ss_pred Hhh
Confidence 864
No 197
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.41 E-value=0.0041 Score=55.02 Aligned_cols=82 Identities=10% Similarity=-0.004 Sum_probs=43.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+|||++|+++++..... ... .+ ++++...+. ... ...... .+.-.|++|++
T Consensus 33 ~GtGKt~lA~~i~~~~~~~-~~~-~v-~~~~~~~~~-----------------~~~----~~~~~~---a~~g~l~ldei 85 (145)
T 3n70_A 33 PGTGRMTGARYLHQFGRNA-QGE-FV-YRELTPDNA-----------------PQL----NDFIAL---AQGGTLVLSHP 85 (145)
T ss_dssp TTSSHHHHHHHHHHSSTTT-TSC-CE-EEECCTTTS-----------------SCH----HHHHHH---HTTSCEEEECG
T ss_pred CCCCHHHHHHHHHHhCCcc-CCC-EE-EECCCCCcc-----------------hhh----hcHHHH---cCCcEEEEcCh
Confidence 6999999999998864311 112 23 666543322 000 001111 13347899999
Q ss_pred CCcc--ccccccccccCCCCCcEEEEeeCCH
Q 048566 82 WKHL--DLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 82 ~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+... ....+...+.......+||.||...
T Consensus 86 ~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 86 EHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp GGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred HHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 8653 2233333333333345677777654
No 198
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.35 E-value=0.1 Score=54.59 Aligned_cols=63 Identities=21% Similarity=0.269 Sum_probs=34.3
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+|||++|+++++... ...+.++.+.-... . .+ . .......+.......+..+|++|++
T Consensus 157 pGtGKT~la~aia~~~~-----~~~~~v~~~~l~~~--~-------~g-----~-~~~~~~~~~~~a~~~~~~il~iDEi 216 (389)
T 3vfd_A 157 PGNGKTMLAKAVAAESN-----ATFFNISAASLTSK--Y-------VG-----E-GEKLVRALFAVARELQPSIIFIDQV 216 (389)
T ss_dssp TTSCHHHHHHHHHHHTT-----CEEEEECSCCC----------------------CHHHHHHHHHHHHHSSSEEEEEETG
T ss_pred CCCCHHHHHHHHHHhhc-----CcEEEeeHHHhhcc--c-------cc-----h-HHHHHHHHHHHHHhcCCeEEEEECc
Confidence 69999999999987743 12344444332210 0 00 0 1122333444443346689999999
Q ss_pred CCc
Q 048566 82 WKH 84 (760)
Q Consensus 82 ~~~ 84 (760)
+..
T Consensus 217 d~l 219 (389)
T 3vfd_A 217 DSL 219 (389)
T ss_dssp GGG
T ss_pred hhh
Confidence 754
No 199
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.33 E-value=0.096 Score=55.88 Aligned_cols=64 Identities=25% Similarity=0.312 Sum_probs=33.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+|||+||+++++.... ...+.++.+.- ... ..+.. ......+.+.....++.+|++|++
T Consensus 176 pGtGKT~lA~aia~~~~~----~~~~~v~~~~l------~~~---~~g~~------~~~~~~~f~~a~~~~~~vl~iDEi 236 (444)
T 2zan_A 176 PGTGKSYLAKAVATEANN----STFFSISSSDL------VSK---WLGES------EKLVKNLFQLARENKPSIIFIDEI 236 (444)
T ss_dssp TTSSHHHHHHHHHHHCCS----SEEEEECCC------------------C------CCTHHHHHHHHHHSCSEEEEESCT
T ss_pred CCCCHHHHHHHHHHHcCC----CCEEEEeHHHH------Hhh---hcchH------HHHHHHHHHHHHHcCCeEEEEech
Confidence 799999999999987521 11223333211 100 01110 111233444444357899999999
Q ss_pred CCc
Q 048566 82 WKH 84 (760)
Q Consensus 82 ~~~ 84 (760)
+..
T Consensus 237 d~l 239 (444)
T 2zan_A 237 DSL 239 (444)
T ss_dssp TTT
T ss_pred Hhh
Confidence 865
No 200
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.21 E-value=0.058 Score=58.88 Aligned_cols=137 Identities=12% Similarity=0.120 Sum_probs=66.5
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHH-HHcCCcEEEEEEC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFER-LRNEKKILVVLDN 80 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-l~~~~r~LlVlDd 80 (760)
+|+||||+|+++++... + .++.++++...... .....+........ .........+. ...+++.+||+|+
T Consensus 86 pGtGKTtla~~la~~l~----~-~~i~in~s~~~~~~-~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~vliIDE 156 (516)
T 1sxj_A 86 PGIGKTTAAHLVAQELG----Y-DILEQNASDVRSKT-LLNAGVKNALDNMS---VVGYFKHNEEAQNLNGKHFVIIMDE 156 (516)
T ss_dssp TTSSHHHHHHHHHHHTT----C-EEEEECTTSCCCHH-HHHHTGGGGTTBCC---STTTTTC----CCSSTTSEEEEECS
T ss_pred CCCCHHHHHHHHHHHcC----C-CEEEEeCCCcchHH-HHHHHHHHHhcccc---HHHHHhhhhhhhhccCCCeEEEEEC
Confidence 69999999999998862 2 24455655544433 22222221111100 00000000000 0124788999999
Q ss_pred CCCccc-----cccccccccCCCCCcEEEEeeCCH----------------------HHHHHHHHHHh---CCCcCChhh
Q 048566 81 IWKHLD-----LETVGIPFGEDHKGCKLLLTARDR----------------------KEAWRLFKMMV---GDDVENREL 130 (760)
Q Consensus 81 v~~~~~-----~~~l~~~~~~~~~gs~IlvTTR~~----------------------~~a~~Lf~~~a---~~~~~~~~~ 130 (760)
|+.... ++.+...+.. . +..||+++... ++..+.+...+ +-...+
T Consensus 157 id~l~~~~~~~l~~L~~~l~~-~-~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~--- 231 (516)
T 1sxj_A 157 VDGMSGGDRGGVGQLAQFCRK-T-STPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP--- 231 (516)
T ss_dssp GGGCCTTSTTHHHHHHHHHHH-C-SSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---
T ss_pred CCccchhhHHHHHHHHHHHHh-c-CCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---
Confidence 976521 1223222221 1 22355555432 55566666554 221211
Q ss_pred HHHHHHHHHHhCC-cchHHHHHHH
Q 048566 131 KSTAIDVARACGG-LPIALTTVAM 153 (760)
Q Consensus 131 ~~~~~~i~~~c~g-lPLai~~~~~ 153 (760)
+....|++.++| ++-|+..+..
T Consensus 232 -~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 232 -NVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp -THHHHHHHHTTTCHHHHHHHHTH
T ss_pred -HHHHHHHHHcCCcHHHHHHHHHH
Confidence 336678888888 5555655543
No 201
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.18 E-value=0.18 Score=50.52 Aligned_cols=63 Identities=16% Similarity=0.241 Sum_probs=35.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+||||+|+++++.... ..+.++.+.-.. ..... .......+.......++.+|++|++
T Consensus 63 ~GtGKT~la~~la~~~~~-----~~~~i~~~~l~~--------------~~~~~-~~~~~~~~~~~~~~~~~~vl~iDEi 122 (297)
T 3b9p_A 63 PGNGKTLLARAVATECSA-----TFLNISAASLTS--------------KYVGD-GEKLVRALFAVARHMQPSIIFIDEV 122 (297)
T ss_dssp SSSCHHHHHHHHHHHTTC-----EEEEEESTTTSS--------------SSCSC-HHHHHHHHHHHHHHTCSEEEEEETG
T ss_pred CCCCHHHHHHHHHHHhCC-----CeEEeeHHHHhh--------------cccch-HHHHHHHHHHHHHHcCCcEEEeccH
Confidence 699999999999987531 233455433211 00000 1122233333333357889999999
Q ss_pred CCc
Q 048566 82 WKH 84 (760)
Q Consensus 82 ~~~ 84 (760)
+..
T Consensus 123 d~l 125 (297)
T 3b9p_A 123 DSL 125 (297)
T ss_dssp GGT
T ss_pred HHh
Confidence 754
No 202
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.06 E-value=0.11 Score=51.68 Aligned_cols=78 Identities=10% Similarity=0.088 Sum_probs=50.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccc------hhhHHHHHHHHHHH---HcCC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELRE------EVESSRASRIFERL---RNEK 72 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~~~l---~~~~ 72 (760)
+|+||||||.+++.....+..=..++||+..+.++.. .+++++.+.+. .+.++....+.+.+ .+++
T Consensus 37 pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~~~ 111 (333)
T 3io5_A 37 SKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIERGE 111 (333)
T ss_dssp SSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhccC
Confidence 6999999999998876532112468999988777653 37778765432 22222212333343 4467
Q ss_pred cEEEEEECCCCc
Q 048566 73 KILVVLDNIWKH 84 (760)
Q Consensus 73 r~LlVlDdv~~~ 84 (760)
.-+||+|-|...
T Consensus 112 ~~lvVIDSI~aL 123 (333)
T 3io5_A 112 KVVVFIDSLGNL 123 (333)
T ss_dssp CEEEEEECSTTC
T ss_pred ceEEEEeccccc
Confidence 889999999654
No 203
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.03 E-value=0.19 Score=52.84 Aligned_cols=63 Identities=22% Similarity=0.251 Sum_probs=38.3
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|.|||.||++++++.... .+.++.+.-. .....+ .+..+..++...+...+++|++|++
T Consensus 252 PGTGKTlLAkAiA~e~~~~-----fi~vs~s~L~--------------sk~vGe-sek~ir~lF~~Ar~~aP~IIfiDEi 311 (467)
T 4b4t_H 252 PGTGKTLCARAVANRTDAT-----FIRVIGSELV--------------QKYVGE-GARMVRELFEMARTKKACIIFFDEI 311 (467)
T ss_dssp TTSSHHHHHHHHHHHHTCE-----EEEEEGGGGC--------------CCSSSH-HHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred CCCcHHHHHHHHHhccCCC-----eEEEEhHHhh--------------cccCCH-HHHHHHHHHHHHHhcCCceEeeccc
Confidence 7999999999999987532 3444443211 111111 1223444555444458899999999
Q ss_pred CCc
Q 048566 82 WKH 84 (760)
Q Consensus 82 ~~~ 84 (760)
+..
T Consensus 312 Dai 314 (467)
T 4b4t_H 312 DAV 314 (467)
T ss_dssp TTT
T ss_pred ccc
Confidence 854
No 204
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.94 E-value=0.16 Score=53.46 Aligned_cols=63 Identities=25% Similarity=0.345 Sum_probs=38.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|.|||.||+++++..... .+.++.+.-.+ ....+ ....+..++...+...+++|++|++
T Consensus 224 PGtGKTllAkAiA~e~~~~-----~~~v~~s~l~s--------------k~~Ge-se~~ir~~F~~A~~~~P~IifiDEi 283 (437)
T 4b4t_L 224 PGTGKTLLAKAVAATIGAN-----FIFSPASGIVD--------------KYIGE-SARIIREMFAYAKEHEPCIIFMDEV 283 (437)
T ss_dssp TTSSHHHHHHHHHHHHTCE-----EEEEEGGGTCC--------------SSSSH-HHHHHHHHHHHHHHSCSEEEEEECC
T ss_pred CCCcHHHHHHHHHHHhCCC-----EEEEehhhhcc--------------ccchH-HHHHHHHHHHHHHhcCCceeeeecc
Confidence 7999999999999987532 34454443211 11111 1223344444444458999999999
Q ss_pred CCc
Q 048566 82 WKH 84 (760)
Q Consensus 82 ~~~ 84 (760)
+..
T Consensus 284 Dai 286 (437)
T 4b4t_L 284 DAI 286 (437)
T ss_dssp CSS
T ss_pred ccc
Confidence 854
No 205
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.76 E-value=0.072 Score=55.63 Aligned_cols=106 Identities=20% Similarity=0.178 Sum_probs=49.7
Q ss_pred CCchhhcCCCCceEEEecCCCCCCC-hhhhhhhccCCeeEecCCCCCC--ccccccccccceeecccCcccccch-hhhc
Q 048566 342 IPGNFFIGMKKLRVLDFTRMQFSSF-PSSIDLLVNLHTLCLDQSALGD--IAIIGKLKNLEVLSFLMSDIMQLPE-ELGQ 417 (760)
Q Consensus 342 ~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~i~~lp~-~~~~ 417 (760)
+....|.++..|+.+.+..+ +..+ ...+.++..|+.+.+..+ +.. ...+.++.+|+.+.+..+.++.++. .+.+
T Consensus 231 i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~ 308 (379)
T 4h09_A 231 LGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMD 308 (379)
T ss_dssp ECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTT
T ss_pred EccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcC
Confidence 33444555555665555543 3322 223444555555555332 222 1234455555555555555554432 3445
Q ss_pred CCCCCEEeccccccccccCcccccCCCCCCEEEc
Q 048566 418 LNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYM 451 (760)
Q Consensus 418 l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l 451 (760)
+.+|+.+.+.. .++.+...++.++++|+.+.+
T Consensus 309 c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 309 CVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp CTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred CCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence 55555555543 244444444555555555444
No 206
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.66 E-value=0.11 Score=53.62 Aligned_cols=39 Identities=8% Similarity=0.104 Sum_probs=24.8
Q ss_pred CcEEEEEECCCCcc--ccccccccccCCCCCcEEEEeeCCH
Q 048566 72 KKILVVLDNIWKHL--DLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 72 ~r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
++-++|+|+++... ..+.+...+.....+..+|++|.+.
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 67799999998752 2233433333333467788888775
No 207
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.63 E-value=0.19 Score=52.23 Aligned_cols=63 Identities=24% Similarity=0.226 Sum_probs=37.9
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|.|||.||++++++.... .+.++.+.-. .....+ .+..+..++...+...+++|++|++
T Consensus 225 PGTGKTlLAkAiA~e~~~~-----fi~v~~s~l~--------------sk~vGe-sek~ir~lF~~Ar~~aP~IIfiDEi 284 (437)
T 4b4t_I 225 PGTGKTLLAKAVANQTSAT-----FLRIVGSELI--------------QKYLGD-GPRLCRQIFKVAGENAPSIVFIDEI 284 (437)
T ss_dssp TTTTHHHHHHHHHHHHTCE-----EEEEESGGGC--------------CSSSSH-HHHHHHHHHHHHHHTCSEEEEEEEE
T ss_pred CCchHHHHHHHHHHHhCCC-----EEEEEHHHhh--------------hccCch-HHHHHHHHHHHHHhcCCcEEEEehh
Confidence 7999999999999987532 2344433211 111111 1233444555554458899999998
Q ss_pred CCc
Q 048566 82 WKH 84 (760)
Q Consensus 82 ~~~ 84 (760)
+..
T Consensus 285 Dai 287 (437)
T 4b4t_I 285 DAI 287 (437)
T ss_dssp SSS
T ss_pred hhh
Confidence 754
No 208
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.57 E-value=0.042 Score=56.05 Aligned_cols=91 Identities=18% Similarity=0.162 Sum_probs=49.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+||||||+++++..... . ..+++++.. .+...+...+... ........+. +..+|++||+
T Consensus 46 ~GtGKT~la~~i~~~~~~~-~-~~~~~i~~~------~~~~~~~~~~~~~--------~~~~~~~~~~--~~~vL~iDEi 107 (324)
T 1l8q_A 46 VGTGKTHLLQAAGNEAKKR-G-YRVIYSSAD------DFAQAMVEHLKKG--------TINEFRNMYK--SVDLLLLDDV 107 (324)
T ss_dssp SSSSHHHHHHHHHHHHHHT-T-CCEEEEEHH------HHHHHHHHHHHHT--------CHHHHHHHHH--TCSEEEEECG
T ss_pred CCCcHHHHHHHHHHHHHHC-C-CEEEEEEHH------HHHHHHHHHHHcC--------cHHHHHHHhc--CCCEEEEcCc
Confidence 6999999999999987532 1 235566543 2333333332110 1122233333 4679999999
Q ss_pred CCccc---c-ccccccccC-CCCCcEEEEeeCCH
Q 048566 82 WKHLD---L-ETVGIPFGE-DHKGCKLLLTARDR 110 (760)
Q Consensus 82 ~~~~~---~-~~l~~~~~~-~~~gs~IlvTTR~~ 110 (760)
+.... + +.+...+.. ...|.+||+||...
T Consensus 108 ~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 108 QFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred ccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 76431 1 222222211 12356788888654
No 209
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.49 E-value=0.013 Score=51.89 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=22.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ 33 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~ 33 (760)
.|.||||||+.+++..... .+ .+++++...
T Consensus 45 ~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~ 74 (149)
T 2kjq_A 45 EGAGKSHLLQAWVAQALEA-GK-NAAYIDAAS 74 (149)
T ss_dssp STTTTCHHHHHHHHHHHTT-TC-CEEEEETTT
T ss_pred CCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHH
Confidence 5999999999999987642 22 266776554
No 210
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.45 E-value=0.12 Score=53.66 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=15.7
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
+|+|||++|+++++...
T Consensus 79 pGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 79 PGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTSSHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 79999999999999875
No 211
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.44 E-value=0.044 Score=50.37 Aligned_cols=17 Identities=35% Similarity=0.616 Sum_probs=15.2
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
+|+|||++|+++++...
T Consensus 52 ~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 52 PGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp GGGCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 69999999999998864
No 212
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.27 E-value=0.04 Score=55.00 Aligned_cols=62 Identities=16% Similarity=0.177 Sum_probs=38.2
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEe--cCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEE
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEV--SQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVL 78 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVl 78 (760)
.+|+||||||.+++.. . -..++|+++ .+..+. . ..+.+.....+.+.+.+ .+ +||+
T Consensus 131 pPGsGKTtLAlqlA~~-~----G~~VlyIs~~~eE~v~~----------~-----~~~le~~l~~i~~~l~~-~~-LLVI 188 (331)
T 2vhj_A 131 KGNSGKTPLVHALGEA-L----GGKDKYATVRFGEPLSG----------Y-----NTDFNVFVDDIARAMLQ-HR-VIVI 188 (331)
T ss_dssp SCSSSHHHHHHHHHHH-H----HTTSCCEEEEBSCSSTT----------C-----BCCHHHHHHHHHHHHHH-CS-EEEE
T ss_pred CCCCCHHHHHHHHHHh-C----CCCEEEEEecchhhhhh----------h-----hcCHHHHHHHHHHHHhh-CC-EEEE
Confidence 4799999999999987 1 123567777 322110 0 01223444556666664 55 9999
Q ss_pred ECCCCc
Q 048566 79 DNIWKH 84 (760)
Q Consensus 79 Ddv~~~ 84 (760)
|++...
T Consensus 189 DsI~aL 194 (331)
T 2vhj_A 189 DSLKNV 194 (331)
T ss_dssp ECCTTT
T ss_pred eccccc
Confidence 999653
No 213
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.21 E-value=0.14 Score=52.56 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=15.3
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
.|+||||+|+.+++...
T Consensus 55 ~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 55 PGTGKTSTIVALAREIY 71 (340)
T ss_dssp SSSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 69999999999999864
No 214
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.18 E-value=0.21 Score=48.17 Aligned_cols=82 Identities=13% Similarity=0.075 Sum_probs=47.8
Q ss_pred CCCcHHHHHHHHHHHHhhhc----CCCeEEEEEecCCCCHHHHHHHHHHHhCcccc----------chhh---HHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDK----LFDMVVFSEVSQIPDIKRIQQEIAEKLGLELR----------EEVE---SSRASRI 64 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------~~~~---~~~~~~~ 64 (760)
+|+||||||+.++....... .-..++|++....++...+ .++++.++.... ..+. ......+
T Consensus 33 ~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (243)
T 1n0w_A 33 FRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQA 111 (243)
T ss_dssp TTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCHHHHHHHHHHH
Confidence 69999999999998643211 1357899987765554433 334455543321 0111 1123334
Q ss_pred HHHHHcCCcEEEEEECCCCc
Q 048566 65 FERLRNEKKILVVLDNIWKH 84 (760)
Q Consensus 65 ~~~l~~~~r~LlVlDdv~~~ 84 (760)
.+.+...+.-+||+|.+...
T Consensus 112 ~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 112 SAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHSCEEEEEEETSSGG
T ss_pred HHHHhcCCceEEEEeCchHH
Confidence 44554347789999998543
No 215
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.08 E-value=0.17 Score=51.74 Aligned_cols=17 Identities=35% Similarity=0.579 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
+|+|||++|+++++...
T Consensus 64 ~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 64 AGLGKTTLANIISYEMS 80 (338)
T ss_dssp TTSSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 79999999999987743
No 216
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.03 E-value=0.076 Score=48.85 Aligned_cols=103 Identities=21% Similarity=0.136 Sum_probs=55.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCC---CCHHHHHHHHHHHhCcc---------ccc---hhh----HHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQI---PDIKRIQQEIAEKLGLE---------LRE---EVE----SSRAS 62 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~---~~~~~~~~~i~~~l~~~---------~~~---~~~----~~~~~ 62 (760)
.|.||||.|...+-+..- +=-.|.++..-+. .....+++ .++.. ... +.+ .....
T Consensus 37 ~GkGKTTaA~GlalRA~g--~G~rV~~vQF~Kg~~~~gE~~~l~----~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l~ 110 (196)
T 1g5t_A 37 NGKGKTTAAFGTAARAVG--HGKNVGVVQFIKGTWPNGERNLLE----PHGVEFQVMATGFTWETQNREADTAACMAVWQ 110 (196)
T ss_dssp SSSCHHHHHHHHHHHHHH--TTCCEEEEESSCCSSCCHHHHHHG----GGTCEEEECCTTCCCCGGGHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH--CCCeEEEEEeeCCCCCccHHHHHH----hCCcEEEEcccccccCCCCcHHHHHHHHHHHH
Confidence 489999999999988763 2335666654432 23333333 33210 001 011 12234
Q ss_pred HHHHHHHcCCcEEEEEECCCCc-----cccccccccccCCCCCcEEEEeeCCH
Q 048566 63 RIFERLRNEKKILVVLDNIWKH-----LDLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 63 ~~~~~l~~~~r~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
..++.+.+++==|||||.+-.. ...+++...+.......-||+|+|..
T Consensus 111 ~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 111 HGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 4455555445569999998432 22233333333333455699999975
No 217
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.02 E-value=0.18 Score=51.28 Aligned_cols=80 Identities=20% Similarity=0.267 Sum_probs=48.4
Q ss_pred CCCcHHHHHHHHHHHHhhhc---C-CCeEEEEEecCCCCHHHHHHHHHHHhCccccc-------------hhhHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDK---L-FDMVVFSEVSQIPDIKRIQQEIAEKLGLELRE-------------EVESSRASRI 64 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~---~-F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------------~~~~~~~~~~ 64 (760)
+|+||||+|.+++....... . -..++|++....++...+. ++++.++.+... +...+....+
T Consensus 116 ~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l 194 (324)
T 2z43_A 116 FGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDL 194 (324)
T ss_dssp TTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHH
T ss_pred CCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHHHHHHHHHHH
Confidence 69999999999998743211 0 2468999988876665554 445666543210 1111233444
Q ss_pred HHHHHc-CCcEEEEEECCC
Q 048566 65 FERLRN-EKKILVVLDNIW 82 (760)
Q Consensus 65 ~~~l~~-~~r~LlVlDdv~ 82 (760)
...+.+ .+.-+||+|.+.
T Consensus 195 ~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 195 QELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHCTTEEEEEETTTT
T ss_pred HHHHHhccCCCEEEEeCcH
Confidence 444543 466788888874
No 218
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.94 E-value=0.19 Score=51.27 Aligned_cols=76 Identities=22% Similarity=0.243 Sum_probs=47.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccc------hhhHHHHHHHHHHHHcCCcEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELRE------EVESSRASRIFERLRNEKKIL 75 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~~~l~~~~r~L 75 (760)
+|+||||||.+++...... =..++|++....++.. .+++++..... .+.++....+......++.-+
T Consensus 70 pGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dl 142 (356)
T 3hr8_A 70 ESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVDL 142 (356)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCSE
T ss_pred CCCCHHHHHHHHHHHHHhc--CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCCe
Confidence 6999999999999886532 2357899887766643 55666654321 222333333443333345668
Q ss_pred EEEECCCCc
Q 048566 76 VVLDNIWKH 84 (760)
Q Consensus 76 lVlDdv~~~ 84 (760)
+|+|.+...
T Consensus 143 vVIDSi~~l 151 (356)
T 3hr8_A 143 IVVDSVAAL 151 (356)
T ss_dssp EEEECTTTC
T ss_pred EEehHhhhh
Confidence 999998644
No 219
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.90 E-value=0.15 Score=53.46 Aligned_cols=62 Identities=18% Similarity=0.201 Sum_probs=36.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|.|||.+|+++++.... ..+.++.+.-. .....+ ....+..++...+...+++|++|++
T Consensus 224 PGTGKTllAkAiA~e~~~-----~f~~v~~s~l~--------------~~~vGe-se~~ir~lF~~A~~~aP~IifiDEi 283 (434)
T 4b4t_M 224 PGTGKTLLARACAAQTNA-----TFLKLAAPQLV--------------QMYIGE-GAKLVRDAFALAKEKAPTIIFIDEL 283 (434)
T ss_dssp TTSSHHHHHHHHHHHHTC-----EEEEEEGGGGC--------------SSCSSH-HHHHHHHHHHHHHHHCSEEEEEECT
T ss_pred CCCCHHHHHHHHHHHhCC-----CEEEEehhhhh--------------hcccch-HHHHHHHHHHHHHhcCCeEEeecch
Confidence 799999999999998752 23444443211 111111 1223334444433347899999998
Q ss_pred CC
Q 048566 82 WK 83 (760)
Q Consensus 82 ~~ 83 (760)
+.
T Consensus 284 Da 285 (434)
T 4b4t_M 284 DA 285 (434)
T ss_dssp HH
T ss_pred hh
Confidence 64
No 220
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.90 E-value=0.021 Score=57.71 Aligned_cols=92 Identities=14% Similarity=0.136 Sum_probs=45.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+|||+||+++++....+.. ..+++++++ .+..++...+... ........+. +.-+||+||+
T Consensus 161 ~GtGKT~La~aia~~~~~~~g-~~v~~~~~~------~l~~~l~~~~~~~--------~~~~~~~~~~--~~~lLiiDdi 223 (308)
T 2qgz_A 161 MGIGKSYLLAAMAHELSEKKG-VSTTLLHFP------SFAIDVKNAISNG--------SVKEEIDAVK--NVPVLILDDI 223 (308)
T ss_dssp TTSSHHHHHHHHHHHHHHHSC-CCEEEEEHH------HHHHHHHCCCC------------CCTTHHHH--TSSEEEEETC
T ss_pred CCCCHHHHHHHHHHHHHHhcC-CcEEEEEHH------HHHHHHHHHhccc--------hHHHHHHHhc--CCCEEEEcCC
Confidence 699999999999998762222 345566654 3333332222110 0112223333 2348899999
Q ss_pred CCc--cccc--cccc-cccCC-CCCcEEEEeeCCH
Q 048566 82 WKH--LDLE--TVGI-PFGED-HKGCKLLLTARDR 110 (760)
Q Consensus 82 ~~~--~~~~--~l~~-~~~~~-~~gs~IlvTTR~~ 110 (760)
... ..|. .+.. .+... ..+..+|+||...
T Consensus 224 g~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~ 258 (308)
T 2qgz_A 224 GAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYS 258 (308)
T ss_dssp CC------CTTTTHHHHHHHHHHHTCCEEEEESSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 542 2332 1222 11111 1233588888865
No 221
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.85 E-value=0.069 Score=45.88 Aligned_cols=55 Identities=20% Similarity=0.258 Sum_probs=37.2
Q ss_pred eeecccCccc--ccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccc
Q 048566 400 VLSFLMSDIM--QLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIE 457 (760)
Q Consensus 400 ~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~ 457 (760)
.++.++.+++ .+|..+ -.+|++|+|++| .+..++.+.+..+++|++|+|.+|...
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCee
Confidence 5566666666 666543 245777777776 677777776777777777777777553
No 222
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.80 E-value=0.25 Score=50.52 Aligned_cols=81 Identities=16% Similarity=0.208 Sum_probs=48.5
Q ss_pred CCCcHHHHHHHHHHHHhhhc----CCCeEEEEEecCCCCHHHHHHHHHHHhCcccc-------------chhhHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDK----LFDMVVFSEVSQIPDIKRIQQEIAEKLGLELR-------------EEVESSRASRI 64 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------------~~~~~~~~~~~ 64 (760)
+|+||||+|.+++....... .-..++|++....++...+. ++++.++.+.. .+...+....+
T Consensus 131 ~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~~e~~~~ll~~l 209 (343)
T 1v5w_A 131 FRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYV 209 (343)
T ss_dssp TTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCCHHHHHHHHHHH
Confidence 69999999999998743211 12468999988876665544 34555554321 01111223334
Q ss_pred HHHHHc--CCcEEEEEECCCC
Q 048566 65 FERLRN--EKKILVVLDNIWK 83 (760)
Q Consensus 65 ~~~l~~--~~r~LlVlDdv~~ 83 (760)
...+.+ .+.-+||+|.+..
T Consensus 210 ~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 210 AAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp HHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHhcCCCccEEEEechHH
Confidence 444443 4667899998853
No 223
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.38 E-value=0.23 Score=51.08 Aligned_cols=76 Identities=21% Similarity=0.161 Sum_probs=46.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCcccc------chhhHHHHHHHHHHHHcCCcEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELR------EEVESSRASRIFERLRNEKKIL 75 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~~~~l~~~~r~L 75 (760)
+|+||||||.+++...... -..++|++....++.. .++.++.+.. ..+.++....+....+.++--+
T Consensus 83 pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~l 155 (366)
T 1xp8_A 83 ESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDV 155 (366)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSE
T ss_pred CCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCCE
Confidence 6999999999998876533 2468999988766543 2455554322 1122233333333333335568
Q ss_pred EEEECCCCc
Q 048566 76 VVLDNIWKH 84 (760)
Q Consensus 76 lVlDdv~~~ 84 (760)
||+|.+...
T Consensus 156 VVIDsl~~l 164 (366)
T 1xp8_A 156 VVVDSVAAL 164 (366)
T ss_dssp EEEECTTTC
T ss_pred EEEeChHHh
Confidence 999998643
No 224
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.02 E-value=0.19 Score=48.04 Aligned_cols=30 Identities=20% Similarity=0.338 Sum_probs=21.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ 33 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~ 33 (760)
+|+||||||+.++...... =..++|++...
T Consensus 32 ~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~ 61 (235)
T 2w0m_A 32 PGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE 61 (235)
T ss_dssp TTSSHHHHHHHHHHHHHHH--TCCEEEEESSS
T ss_pred CCCCHHHHHHHHHHHHHHC--CCeEEEEEccc
Confidence 6999999999999776533 23577776543
No 225
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.01 E-value=0.26 Score=49.95 Aligned_cols=80 Identities=21% Similarity=0.231 Sum_probs=48.0
Q ss_pred CCCcHHHHHHHHHHHHhhh------------cCC--CeEEEEEecCCCCHHHHHHHHHHHhCcccc---------c-hhh
Q 048566 2 GGIGKTTLVKKVARQAMED------------KLF--DMVVFSEVSQIPDIKRIQQEIAEKLGLELR---------E-EVE 57 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~------------~~F--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~-~~~ 57 (760)
+|+||||+|.+++...... +.. ..++|++....++...+.+ +++.++.+.. . .+.
T Consensus 107 ~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~ 185 (322)
T 2i1q_A 107 FGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDNTFVARAYNS 185 (322)
T ss_dssp TTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHTEEEEECSSH
T ss_pred CCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcCEEEEeCCCH
Confidence 6999999999998764211 111 4689999888776665553 4555554321 0 111
Q ss_pred ---HHHHHHHHHHHHc-CCcEEEEEECCC
Q 048566 58 ---SSRASRIFERLRN-EKKILVVLDNIW 82 (760)
Q Consensus 58 ---~~~~~~~~~~l~~-~~r~LlVlDdv~ 82 (760)
.+....+...+.+ .+.-+||+|.+.
T Consensus 186 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 186 DMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp HHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred HHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 1233344555544 456688888874
No 226
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.98 E-value=0.091 Score=48.50 Aligned_cols=82 Identities=16% Similarity=0.139 Sum_probs=43.7
Q ss_pred hcCCCCceEEEecCC-CCC-----CChhhhhhhccCCeeEecCCCCCCc--c----ccccccccceeecccCccc-----
Q 048566 347 FIGMKKLRVLDFTRM-QFS-----SFPSSIDLLVNLHTLCLDQSALGDI--A----IIGKLKNLEVLSFLMSDIM----- 409 (760)
Q Consensus 347 ~~~l~~Lr~L~l~~~-~~~-----~lp~~i~~l~~L~~L~l~~~~l~~~--~----~~~~l~~L~~L~l~~~~i~----- 409 (760)
+.+-+.|+.|+|+++ .+. .+-..+..-..|+.|+|++|.+.+. . .+..-+.|++|+|++|.|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 344556777777664 544 2334444455677777777666541 1 2223355666666666554
Q ss_pred ccchhhhcCCCCCEEeccc
Q 048566 410 QLPEELGQLNKLRLLDLTN 428 (760)
Q Consensus 410 ~lp~~~~~l~~L~~L~l~~ 428 (760)
.+-+.+..-+.|+.|++++
T Consensus 117 ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHhhCCceeEEECCC
Confidence 2233344444566666654
No 227
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.96 E-value=0.29 Score=50.11 Aligned_cols=75 Identities=25% Similarity=0.310 Sum_probs=45.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccc-----hhhHHHHHHHHHHH-HcCCcEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELRE-----EVESSRASRIFERL-RNEKKIL 75 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~~l-~~~~r~L 75 (760)
+|+||||||.+++...... -..++|++....++.. .++.++.+... .+..+.+..+.+.+ ++.+--+
T Consensus 72 pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~l 144 (356)
T 1u94_A 72 ESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 144 (356)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred CCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCCE
Confidence 7999999999999886533 2468999987766633 24555543221 11112222233333 2335568
Q ss_pred EEEECCCC
Q 048566 76 VVLDNIWK 83 (760)
Q Consensus 76 lVlDdv~~ 83 (760)
||+|.+..
T Consensus 145 VVIDsl~~ 152 (356)
T 1u94_A 145 IVVDSVAA 152 (356)
T ss_dssp EEEECGGG
T ss_pred EEEcCHHH
Confidence 99999853
No 228
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.75 E-value=0.34 Score=49.60 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=45.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccc------hhhHHHHHHHHHHHHcCCcEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELRE------EVESSRASRIFERLRNEKKIL 75 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~~~l~~~~r~L 75 (760)
+|+||||||.+++...... =..++|++....++.. .++.++.+... .+.++....+.....+.+.-+
T Consensus 70 pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~l 142 (349)
T 2zr9_A 70 ESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDI 142 (349)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSE
T ss_pred CCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCCE
Confidence 6999999999999876532 2468899988766543 35566544321 122222232222222335669
Q ss_pred EEEECCCC
Q 048566 76 VVLDNIWK 83 (760)
Q Consensus 76 lVlDdv~~ 83 (760)
||+|.+..
T Consensus 143 IVIDsl~~ 150 (349)
T 2zr9_A 143 IVIDSVAA 150 (349)
T ss_dssp EEEECGGG
T ss_pred EEEcChHh
Confidence 99999854
No 229
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.47 E-value=0.17 Score=50.68 Aligned_cols=92 Identities=9% Similarity=-0.051 Sum_probs=53.2
Q ss_pred CCCcHHHHHHHHHHHHh-hhcCCCeEEEEEecC-CCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEE
Q 048566 2 GGIGKTTLVKKVARQAM-EDKLFDMVVFSEVSQ-IPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLD 79 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~-~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlD 79 (760)
.|+||||+|+.+++... ....+..+.+++.+. ...+.. .+++.+.+..... .+++-++|+|
T Consensus 27 ~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~~~~~p~----------------~~~~kvviId 89 (305)
T 2gno_A 27 DLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDFLNYSPE----------------LYTRKYVIVH 89 (305)
T ss_dssp SSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHHHTSCCS----------------SSSSEEEEET
T ss_pred CCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHHHhhccc----------------cCCceEEEec
Confidence 69999999999997521 111122345565443 222222 2333333321110 1467789999
Q ss_pred CCCCc--cccccccccccCCCCCcEEEEeeCCH
Q 048566 80 NIWKH--LDLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 80 dv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+++.. +..+.+...+....+.+.+|++|.+.
T Consensus 90 ead~lt~~a~naLLk~LEep~~~t~fIl~t~~~ 122 (305)
T 2gno_A 90 DCERMTQQAANAFLKALEEPPEYAVIVLNTRRW 122 (305)
T ss_dssp TGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred cHHHhCHHHHHHHHHHHhCCCCCeEEEEEECCh
Confidence 99865 34566666665555677888888665
No 230
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.41 E-value=0.44 Score=44.94 Aligned_cols=35 Identities=20% Similarity=0.105 Sum_probs=25.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQ 41 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 41 (760)
+|+||||+|+.++. . . -..++|++.....+...+.
T Consensus 29 ~GsGKTtl~~~l~~-~--~--~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 29 YASGKTTLALQTGL-L--S--GKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TTSSHHHHHHHHHH-H--H--CSEEEEEESSCCCCHHHHH
T ss_pred CCCCHHHHHHHHHH-H--c--CCcEEEEECCCCCCHHHHH
Confidence 79999999999998 2 1 2478899877655554443
No 231
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.40 E-value=0.35 Score=51.06 Aligned_cols=81 Identities=22% Similarity=0.328 Sum_probs=51.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCcc-------cc------chhh-------HHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGLE-------LR------EEVE-------SSR 60 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~------~~~~-------~~~ 60 (760)
.|+|||+|+.++.+.... .+-+.++++-+.++. ...++++++.+.=..+ .. .++. ...
T Consensus 174 ~GvGKT~L~~~l~~~~a~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~~R~~~~~~ 252 (498)
T 1fx0_B 174 AGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLT 252 (498)
T ss_dssp SSSSHHHHHHHHHHHTTT-TCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHHHHTTHHHH
T ss_pred CCCCchHHHHHHHHHHHh-hCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCHHHHHHHHHH
Confidence 599999999999998642 345788888888876 4556677766531111 00 0111 111
Q ss_pred HHHHHHHHHc--CCcEEEEEECCCC
Q 048566 61 ASRIFERLRN--EKKILVVLDNIWK 83 (760)
Q Consensus 61 ~~~~~~~l~~--~~r~LlVlDdv~~ 83 (760)
.-.+-++++. |+.+|+++||+..
T Consensus 253 altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 253 ALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp HHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred HHHHHHHHHHhcCCcEEEEeccHHH
Confidence 2334445543 7999999999854
No 232
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.27 E-value=0.51 Score=49.15 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=46.4
Q ss_pred CCCcHHHHHHHHHHHHhhhc----CCCeEEEEEecCCCCHHHHHHHHHHHhCcccc-------------chhhHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDK----LFDMVVFSEVSQIPDIKRIQQEIAEKLGLELR-------------EEVESSRASRI 64 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------------~~~~~~~~~~~ 64 (760)
+|+||||||..++-...... .-..++|++....+....+ +.+++.++.... .....+...++
T Consensus 187 sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~~~~~~l~~~ 265 (400)
T 3lda_A 187 FRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAA 265 (400)
T ss_dssp TTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChHHHHHHHHHH
Confidence 69999999998765432111 2346899987766554443 346666654321 01111233344
Q ss_pred HHHHHcCCcEEEEEECCC
Q 048566 65 FERLRNEKKILVVLDNIW 82 (760)
Q Consensus 65 ~~~l~~~~r~LlVlDdv~ 82 (760)
...+...+.-+||+|.+.
T Consensus 266 ~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 266 AQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHSCEEEEEEETGG
T ss_pred HHHHHhcCCceEEecchh
Confidence 444444467899999864
No 233
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.27 E-value=0.35 Score=51.00 Aligned_cols=81 Identities=20% Similarity=0.340 Sum_probs=45.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCccc------c-chhhH------HHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGLEL------R-EEVES------SRASRIFER 67 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~-~~~~~------~~~~~~~~~ 67 (760)
.|+||||||..+......+ +-+.++++-+.+.. ...++++++.+.=..+. . .+... ...-.+-++
T Consensus 160 sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~~ltiAEy 238 (473)
T 1sky_E 160 AGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALTGLTMAEY 238 (473)
T ss_dssp SSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 6999999999999887643 22456667776655 34455555543210000 0 00000 001123333
Q ss_pred HH--cCCcEEEEEECCCC
Q 048566 68 LR--NEKKILVVLDNIWK 83 (760)
Q Consensus 68 l~--~~~r~LlVlDdv~~ 83 (760)
+. +|+++|+++||+..
T Consensus 239 Frd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 239 FRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHSCCEEEEEEECTHH
T ss_pred HHHhcCCcEEEEeccHHH
Confidence 33 37999999999854
No 234
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.19 E-value=0.5 Score=49.73 Aligned_cols=82 Identities=20% Similarity=0.302 Sum_probs=50.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCcc------cc------chhh-------HHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGLE------LR------EEVE-------SSRA 61 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~~------~~~~-------~~~~ 61 (760)
+|+|||+|++++++... +.+-+.++++-+.++. .+.++++++.+.=..+ .. .++. ....
T Consensus 162 ~G~GKT~L~~~i~~~~~-~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~~~r~~~~~~a 240 (482)
T 2ck3_D 162 AGVGKTVLIMELINNVA-KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTG 240 (482)
T ss_dssp TTSSHHHHHHHHHHHTT-TTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHhhH-hhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCHHHHHHHHHHH
Confidence 69999999999998864 2345677888888765 4556777776542211 00 0111 0112
Q ss_pred HHHHHHHH--cCCcEEEEEECCCCc
Q 048566 62 SRIFERLR--NEKKILVVLDNIWKH 84 (760)
Q Consensus 62 ~~~~~~l~--~~~r~LlVlDdv~~~ 84 (760)
-.+-++++ +|+.+||++||+...
T Consensus 241 ~tiAEyfrd~~G~dVLll~DsitR~ 265 (482)
T 2ck3_D 241 LTVAEYFRDQEGQDVLLFIDNIFRF 265 (482)
T ss_dssp HHHHHHHHHTTCSCEEEEEECTHHH
T ss_pred HHHHHHHHHhcCCcEEEEeccHHHH
Confidence 23334444 379999999998543
No 235
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.89 E-value=0.076 Score=53.65 Aligned_cols=76 Identities=17% Similarity=0.257 Sum_probs=39.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+|||++|+.+++..... -...+.++++....... ..+.++.......... ...+...+.....-++++|++
T Consensus 56 ~GtGKt~la~~la~~~~~~--~~~~~~~~~~~~~~~~~----~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~vl~lDEi 128 (311)
T 4fcw_A 56 TGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKHA----VSRLIGAPPGYVGYEE-GGQLTEAVRRRPYSVILFDAI 128 (311)
T ss_dssp SSSSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCSTTH----HHHHHCCCTTSTTTTT-CCHHHHHHHHCSSEEEEEETG
T ss_pred CCcCHHHHHHHHHHHHcCC--CcceEEeeccccccccc----HHHhcCCCCccccccc-cchHHHHHHhCCCeEEEEeCh
Confidence 6999999999999986422 12356667654332211 1122222211100000 012333333345679999999
Q ss_pred CCc
Q 048566 82 WKH 84 (760)
Q Consensus 82 ~~~ 84 (760)
+..
T Consensus 129 ~~l 131 (311)
T 4fcw_A 129 EKA 131 (311)
T ss_dssp GGS
T ss_pred hhc
Confidence 765
No 236
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=91.39 E-value=0.22 Score=49.74 Aligned_cols=17 Identities=29% Similarity=0.262 Sum_probs=15.6
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
+|+|||+||+++++...
T Consensus 45 pGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 45 KGQGKSFQCELVFRKMG 61 (293)
T ss_dssp TTSCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 79999999999999874
No 237
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.30 E-value=0.026 Score=49.63 Aligned_cols=16 Identities=13% Similarity=0.179 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQA 17 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (760)
+|+|||++|+++++..
T Consensus 36 ~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 36 AGSPFETVARYFHKNG 51 (143)
T ss_dssp TTCCHHHHHGGGCCTT
T ss_pred CCccHHHHHHHHHHhC
Confidence 6999999999988653
No 238
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=91.16 E-value=0.32 Score=48.73 Aligned_cols=62 Identities=19% Similarity=0.301 Sum_probs=35.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+|||++|+++++.... ..+.++. ..+.... ++.. ......+.+......+.+|++|++
T Consensus 58 ~GtGKT~la~ala~~~~~-----~~i~v~~------~~l~~~~---~g~~------~~~~~~~f~~a~~~~p~il~iDEi 117 (301)
T 3cf0_A 58 PGCGKTLLAKAIANECQA-----NFISIKG------PELLTMW---FGES------EANVREIFDKARQAAPCVLFFDEL 117 (301)
T ss_dssp SSSSHHHHHHHHHHHTTC-----EEEEECH------HHHHHHH---HTTC------TTHHHHHHHHHHHTCSEEEEECST
T ss_pred CCcCHHHHHHHHHHHhCC-----CEEEEEh------HHHHhhh---cCch------HHHHHHHHHHHHhcCCeEEEEECh
Confidence 699999999999987531 2233322 2222211 1111 112333444444347899999999
Q ss_pred CC
Q 048566 82 WK 83 (760)
Q Consensus 82 ~~ 83 (760)
+.
T Consensus 118 d~ 119 (301)
T 3cf0_A 118 DS 119 (301)
T ss_dssp TH
T ss_pred HH
Confidence 75
No 239
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=90.44 E-value=0.61 Score=45.86 Aligned_cols=62 Identities=19% Similarity=0.287 Sum_probs=36.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|.||||||+.++..... ..++++.+.-.+. ... .....+..+.+......+.++++|++
T Consensus 53 ~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~--------------~~~-~~~~~i~~vf~~a~~~~p~i~~~Dei 112 (274)
T 2x8a_A 53 PGCGKTLLAKAVANESGL-----NFISVKGPELLNM--------------YVG-ESERAVRQVFQRAKNSAPCVIFFDEV 112 (274)
T ss_dssp TTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSS--------------TTH-HHHHHHHHHHHHHHHTCSEEEEEETC
T ss_pred CCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhh--------------hhh-HHHHHHHHHHHHHHhcCCCeEeeehh
Confidence 699999999999987542 3445553321110 000 01122344455443347899999999
Q ss_pred CC
Q 048566 82 WK 83 (760)
Q Consensus 82 ~~ 83 (760)
+.
T Consensus 113 d~ 114 (274)
T 2x8a_A 113 DA 114 (274)
T ss_dssp TT
T ss_pred hh
Confidence 74
No 240
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.41 E-value=1.2 Score=44.82 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=30.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEK 47 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 47 (760)
+|+||||+|.+++.....++ ..++|++.. -+..++.+.++..
T Consensus 77 pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 77 PSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 79999999999998866432 678888765 3555666666543
No 241
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.38 E-value=0.29 Score=41.86 Aligned_cols=9 Identities=33% Similarity=0.305 Sum_probs=3.3
Q ss_pred CCCCEEecc
Q 048566 419 NKLRLLDLT 427 (760)
Q Consensus 419 ~~L~~L~l~ 427 (760)
++|+.|+|.
T Consensus 55 ~~L~~L~L~ 63 (130)
T 3rfe_A 55 PALRTAHLG 63 (130)
T ss_dssp TTCCEEECC
T ss_pred cccCEEEec
Confidence 333333333
No 242
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.36 E-value=0.24 Score=50.52 Aligned_cols=79 Identities=20% Similarity=0.246 Sum_probs=41.5
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCe-EEEEEecCCCCHHHHHHHHHHHhCcccc---chhh-H------HHHHHHHHHHH-
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDM-VVFSEVSQIPDIKRIQQEIAEKLGLELR---EEVE-S------SRASRIFERLR- 69 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~-~------~~~~~~~~~l~- 69 (760)
.|+|||||++.+.+....+ +-+. ++++-+.++..... ++.+.+....- .++. . ..+-.+-+++.
T Consensus 183 sG~GKTtLl~~Iar~i~~~-~~~v~~I~~lIGER~~Ev~---~~~~~~~~~vV~atadep~~~r~~~a~~alt~AEyfrd 258 (422)
T 3ice_A 183 PKAGKTMLLQNIAQSIAYN-HPDCVLMVLLIDERPEEVT---EMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVE 258 (422)
T ss_dssp SSSSHHHHHHHHHHHHHHH-CTTSEEEEEEESSCHHHHH---HHHTTCSSEEEEECTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHhhc-CCCeeEEEEEecCChHHHH---HHHHHhCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 6999999999998876532 2232 44576776543221 12233211110 0111 0 11111222332
Q ss_pred cCCcEEEEEECCCCc
Q 048566 70 NEKKILVVLDNIWKH 84 (760)
Q Consensus 70 ~~~r~LlVlDdv~~~ 84 (760)
+|+.+||++||+...
T Consensus 259 ~G~dVLil~DslTR~ 273 (422)
T 3ice_A 259 HKKDVIILLDSITRL 273 (422)
T ss_dssp TSCEEEEEEECHHHH
T ss_pred cCCCEEEEEeCchHH
Confidence 479999999998654
No 243
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=90.35 E-value=0.61 Score=50.07 Aligned_cols=61 Identities=23% Similarity=0.364 Sum_probs=33.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+|||++|+++++... . ..+.++.+. +...+. .+ .......+++....+++.+|+||++
T Consensus 247 pGtGKT~lAraia~~~~--~---~fv~vn~~~----------l~~~~~----g~-~~~~~~~~f~~A~~~~p~iLfLDEI 306 (489)
T 3hu3_A 247 PGTGKTLIARAVANETG--A---FFFLINGPE----------IMSKLA----GE-SESNLRKAFEEAEKNAPAIIFIDEL 306 (489)
T ss_dssp TTSSHHHHHHHHHHHCS--S---EEEEEEHHH----------HHTSCT----TH-HHHHHHHHHHHHHHTCSEEEEEESH
T ss_pred CCCCHHHHHHHHHHHhC--C---CEEEEEchH----------hhhhhc----ch-hHHHHHHHHHHHHhcCCcEEEecch
Confidence 69999999999987752 1 234444321 111111 11 1122233344444457889999999
Q ss_pred C
Q 048566 82 W 82 (760)
Q Consensus 82 ~ 82 (760)
+
T Consensus 307 d 307 (489)
T 3hu3_A 307 D 307 (489)
T ss_dssp H
T ss_pred h
Confidence 4
No 244
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.12 E-value=0.46 Score=49.74 Aligned_cols=62 Identities=23% Similarity=0.289 Sum_probs=37.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|.|||++|+++++.... ..+.|+.+.-.+ ....+ ....+..++...+...+++|++|++
T Consensus 215 PGtGKT~lakAiA~~~~~-----~~~~v~~~~l~~--------------~~~Ge-~e~~ir~lF~~A~~~aP~IifiDEi 274 (428)
T 4b4t_K 215 PGTGKTMLVKAVANSTKA-----AFIRVNGSEFVH--------------KYLGE-GPRMVRDVFRLARENAPSIIFIDEV 274 (428)
T ss_dssp TTTTHHHHHHHHHHHHTC-----EEEEEEGGGTCC--------------SSCSH-HHHHHHHHHHHHHHTCSEEEEEECT
T ss_pred CCCCHHHHHHHHHHHhCC-----CeEEEecchhhc--------------cccch-hHHHHHHHHHHHHHcCCCeeechhh
Confidence 799999999999998752 234455443211 11111 1233444555554458899999998
Q ss_pred CC
Q 048566 82 WK 83 (760)
Q Consensus 82 ~~ 83 (760)
+.
T Consensus 275 D~ 276 (428)
T 4b4t_K 275 DS 276 (428)
T ss_dssp HH
T ss_pred hh
Confidence 63
No 245
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=89.94 E-value=0.78 Score=47.97 Aligned_cols=80 Identities=19% Similarity=0.235 Sum_probs=47.9
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCC----eEEEEEecCCC-CHHHHHHHHHHHhCccc------cchh-hH------HHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFD----MVVFSEVSQIP-DIKRIQQEIAEKLGLEL------REEV-ES------SRASR 63 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~----~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~-~~------~~~~~ 63 (760)
.|+|||+|+.+++++... +-+ .++++-+.++. .+.++.+++.+.=..+. ..++ .. ...-.
T Consensus 160 ~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~~~a~t 237 (465)
T 3vr4_D 160 SGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATPRMALT 237 (465)
T ss_dssp TTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHHHHHHH
T ss_pred CCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHHHHHHH
Confidence 599999999999988653 123 56777777665 44566666544311110 0111 11 11234
Q ss_pred HHHHHH--cCCcEEEEEECCCC
Q 048566 64 IFERLR--NEKKILVVLDNIWK 83 (760)
Q Consensus 64 ~~~~l~--~~~r~LlVlDdv~~ 83 (760)
+-++++ +|+.+|+++||+..
T Consensus 238 iAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 238 AAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHhcCCeEEEEEcChHH
Confidence 455555 37999999999864
No 246
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=89.74 E-value=0.35 Score=47.16 Aligned_cols=62 Identities=24% Similarity=0.304 Sum_probs=34.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+||||+|+++++.... . .+.++.+.-.+. .. .. .......+.+......+.++++|++
T Consensus 54 ~GtGKT~la~~la~~~~~--~---~~~i~~~~~~~~----------~~----~~-~~~~~~~~~~~a~~~~~~il~iDei 113 (257)
T 1lv7_A 54 PGTGKTLLAKAIAGEAKV--P---FFTISGSDFVEM----------FV----GV-GASRVRDMFEQAKKAAPCIIFIDEI 113 (257)
T ss_dssp TTSCHHHHHHHHHHHHTC--C---EEEECSCSSTTS----------CC----CC-CHHHHHHHHHHHHTTCSEEEEETTH
T ss_pred CCCCHHHHHHHHHHHcCC--C---EEEEeHHHHHHH----------hh----hh-hHHHHHHHHHHHHHcCCeeehhhhh
Confidence 699999999999987641 1 234443321110 00 00 1122334444444446789999998
Q ss_pred CC
Q 048566 82 WK 83 (760)
Q Consensus 82 ~~ 83 (760)
+.
T Consensus 114 d~ 115 (257)
T 1lv7_A 114 DA 115 (257)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 247
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=89.40 E-value=0.12 Score=50.91 Aligned_cols=31 Identities=10% Similarity=0.116 Sum_probs=20.9
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQI 34 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~ 34 (760)
+|+|||++|+++++..... . ...+.++++..
T Consensus 38 ~GtGKt~la~~i~~~~~~~-~-~~~~~v~~~~~ 68 (265)
T 2bjv_A 38 RGTGKELIASRLHYLSSRW-Q-GPFISLNCAAL 68 (265)
T ss_dssp TTSCHHHHHHHHHHTSTTT-T-SCEEEEEGGGS
T ss_pred CCCcHHHHHHHHHHhcCcc-C-CCeEEEecCCC
Confidence 6999999999999865321 1 23455666653
No 248
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.34 E-value=0.34 Score=44.65 Aligned_cols=106 Identities=8% Similarity=-0.003 Sum_probs=70.6
Q ss_pred CCCccEEEeeccCCcccc---cCCchhhcCCCCceEEEecCCCCC-----CChhhhhhhccCCeeEecCCCCCC--c---
Q 048566 323 CPNLEFLCISLKDSSLEI---NIPGNFFIGMKKLRVLDFTRMQFS-----SFPSSIDLLVNLHTLCLDQSALGD--I--- 389 (760)
Q Consensus 323 ~~~Lr~L~l~~~~~~~~~---~~~~~~~~~l~~Lr~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~l~~--~--- 389 (760)
-+.|+.|+|+.. +.+.. ......+..-+.|+.|+|++|.+. .+-..+..=+.|++|+|++|.|.. .
T Consensus 40 n~~L~~L~L~~n-n~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 40 DTDLKEVNINNM-KRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp CSSCCEEECTTC-CSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCccEEECCCC-CCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 457888888732 12210 011223466678999999999987 455666677889999999999876 2
Q ss_pred -cccccccccceeecccCcc---c-----ccchhhhcCCCCCEEecccc
Q 048566 390 -AIIGKLKNLEVLSFLMSDI---M-----QLPEELGQLNKLRLLDLTNC 429 (760)
Q Consensus 390 -~~~~~l~~L~~L~l~~~~i---~-----~lp~~~~~l~~L~~L~l~~~ 429 (760)
..+..-..|++|+|+++.. . .+...+..-+.|+.|+++.+
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 2344456799999986533 2 23344556677888887654
No 249
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=88.37 E-value=0.83 Score=48.05 Aligned_cols=82 Identities=21% Similarity=0.217 Sum_probs=48.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCC--CeEEEEEecCCC-CHHHHHHHHHHHhCcccc------chh-h------HHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLF--DMVVFSEVSQIP-DIKRIQQEIAEKLGLELR------EEV-E------SSRASRIF 65 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F--~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~------~~~-~------~~~~~~~~ 65 (760)
+|+|||+|+.+++++....+.- +.++++-+.++. .+.++.+++...=..+.. .++ . ....-.+-
T Consensus 161 ~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~~~~a~tiA 240 (469)
T 2c61_A 161 SGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAA 240 (469)
T ss_dssp TTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 5999999999999987632111 356777777665 455666666543111110 111 1 11122334
Q ss_pred HHHH--cCCcEEEEEECCCC
Q 048566 66 ERLR--NEKKILVVLDNIWK 83 (760)
Q Consensus 66 ~~l~--~~~r~LlVlDdv~~ 83 (760)
++++ +|+.+|+++||+..
T Consensus 241 Eyfrdd~G~dVLl~~DsltR 260 (469)
T 2c61_A 241 EYLAYEHGMHVLVILTDITN 260 (469)
T ss_dssp HHHHHHHCCEEEEEEECHHH
T ss_pred HHHHHhcCCeEEEEEeCHHH
Confidence 4444 48999999999754
No 250
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=88.24 E-value=0.83 Score=53.17 Aligned_cols=70 Identities=16% Similarity=0.340 Sum_probs=36.3
Q ss_pred CCCcHHHHHHHHHHHHhhhcC-----CCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHc-CCcEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKL-----FDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRN-EKKIL 75 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~-----F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~-~~r~L 75 (760)
+|+||||+|+.+++....... -..+++++++.-.. +..... ........+.+.... +++.+
T Consensus 200 pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------------g~~~~g-~~~~~l~~~~~~~~~~~~~~i 266 (854)
T 1qvr_A 200 PGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------------GAKYRG-EFEERLKAVIQEVVQSQGEVI 266 (854)
T ss_dssp TTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------------------CHHHHHHHHHHHHHTTCSSEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc------------cCccch-HHHHHHHHHHHHHHhcCCCeE
Confidence 699999999999998743211 12355555432110 000111 122334455555543 37899
Q ss_pred EEEECCCCc
Q 048566 76 VVLDNIWKH 84 (760)
Q Consensus 76 lVlDdv~~~ 84 (760)
|++|+++..
T Consensus 267 L~IDEi~~l 275 (854)
T 1qvr_A 267 LFIDELHTV 275 (854)
T ss_dssp EEECCC---
T ss_pred EEEecHHHH
Confidence 999999764
No 251
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=88.09 E-value=2.4 Score=46.24 Aligned_cols=17 Identities=41% Similarity=0.647 Sum_probs=15.4
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
+|+||||||+.++....
T Consensus 117 ~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 117 PGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp SSSSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcC
Confidence 69999999999998874
No 252
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=87.84 E-value=0.52 Score=44.23 Aligned_cols=35 Identities=17% Similarity=0.154 Sum_probs=27.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKR 39 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 39 (760)
||+||||+|..++.....+ . .++-||.....+...
T Consensus 10 GGvGKTT~a~~LA~~la~~-g--~VlliD~D~q~~~~~ 44 (209)
T 3cwq_A 10 GGVGKTTTAVHLSAYLALQ-G--ETLLIDGDPNRSATG 44 (209)
T ss_dssp TTSSHHHHHHHHHHHHHTT-S--CEEEEEECTTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHhc-C--CEEEEECCCCCCHHH
Confidence 8999999999999988743 2 788889876655443
No 253
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=87.73 E-value=0.85 Score=48.61 Aligned_cols=62 Identities=23% Similarity=0.286 Sum_probs=35.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+|||+||+++++.... . .+.++.+.-... +. .. .......++.....+.+.+|++|++
T Consensus 58 pGtGKT~Laraia~~~~~--~---f~~is~~~~~~~----------~~----g~-~~~~~r~lf~~A~~~~p~ILfIDEi 117 (476)
T 2ce7_A 58 PGTGKTLLARAVAGEANV--P---FFHISGSDFVEL----------FV----GV-GAARVRDLFAQAKAHAPCIVFIDEI 117 (476)
T ss_dssp TTSSHHHHHHHHHHHHTC--C---EEEEEGGGTTTC----------CT----TH-HHHHHHHHHHHHHHTCSEEEEEETG
T ss_pred CCCCHHHHHHHHHHHcCC--C---eeeCCHHHHHHH----------Hh----cc-cHHHHHHHHHHHHhcCCCEEEEech
Confidence 699999999999987642 1 234444332111 00 00 1122233444443357899999999
Q ss_pred CC
Q 048566 82 WK 83 (760)
Q Consensus 82 ~~ 83 (760)
+.
T Consensus 118 d~ 119 (476)
T 2ce7_A 118 DA 119 (476)
T ss_dssp GG
T ss_pred hh
Confidence 65
No 254
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=87.73 E-value=2.9 Score=39.44 Aligned_cols=47 Identities=26% Similarity=0.228 Sum_probs=28.2
Q ss_pred CCCcHHHHHHHHHHHHhhh---c-CCCeEEEEEecCCCCHHHHHHHHHHHhC
Q 048566 2 GGIGKTTLVKKVARQAMED---K-LFDMVVFSEVSQIPDIKRIQQEIAEKLG 49 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~---~-~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 49 (760)
.|+|||||++.++...... . .-..++|++-....... -...+.+..+
T Consensus 34 nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~-~i~~~~~~~~ 84 (231)
T 4a74_A 34 FGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE-RIREIAQNRG 84 (231)
T ss_dssp TTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH-HHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH-HHHHHHHHcC
Confidence 6999999999998754321 1 13458888865543332 2334444443
No 255
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=87.67 E-value=1.4 Score=42.22 Aligned_cols=30 Identities=13% Similarity=0.250 Sum_probs=22.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ 33 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~ 33 (760)
+|+||||+|.+++...... =..++|++...
T Consensus 32 ~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~ 61 (247)
T 2dr3_A 32 PGTGKTIFSQQFLWNGLKM--GEPGIYVALEE 61 (247)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEESSS
T ss_pred CCCCHHHHHHHHHHHHHhc--CCeEEEEEccC
Confidence 6999999999988776532 24688887654
No 256
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=87.24 E-value=1.3 Score=43.99 Aligned_cols=76 Identities=22% Similarity=0.170 Sum_probs=39.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCC-CCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEEC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQI-PDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDN 80 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDd 80 (760)
+|+||||++..++.....+.. ..+..++.... ....+.++...+..+.+.........+......+ . +.=+||+|-
T Consensus 114 ~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~-~~dlvIiDT 190 (296)
T 2px0_A 114 TGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-S-EYDHVFVDT 190 (296)
T ss_dssp TTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-G-GSSEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-c-CCCEEEEeC
Confidence 799999999999988764222 24666765432 2333344444444443321111112222222233 2 445778884
No 257
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=86.68 E-value=0.67 Score=49.67 Aligned_cols=17 Identities=35% Similarity=0.669 Sum_probs=15.5
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
+|+|||++|+.+++...
T Consensus 210 pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 210 PGVGKTAIAEGLAQQII 226 (468)
T ss_dssp TTTTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 79999999999999864
No 258
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=86.39 E-value=1.9 Score=43.94 Aligned_cols=82 Identities=20% Similarity=0.266 Sum_probs=44.7
Q ss_pred CCCcHHHHHHHHHHHHhh--h-cCC-CeEEEEEecCCCCHHHHHHHHHHHhCcccc-------------chhhHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAME--D-KLF-DMVVFSEVSQIPDIKRIQQEIAEKLGLELR-------------EEVESSRASRI 64 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~--~-~~F-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------------~~~~~~~~~~~ 64 (760)
.|+|||||++.++..... . +.. ..++|++....+.... +..+++..+.... .....+.+..+
T Consensus 140 ~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~-i~~i~q~~~~~~~~v~~ni~~~~~~~~~~~~~~l~~~ 218 (349)
T 1pzn_A 140 FGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQA 218 (349)
T ss_dssp TTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH-HHHHHHTTTCCHHHHGGGEEEEECCSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH-HHHHHHHcCCCHHHHhhCEEEEecCChHHHHHHHHHH
Confidence 699999999999987521 1 111 2468998766543332 3345554432211 01111223333
Q ss_pred HHHHHc-----CCcEEEEEECCCCc
Q 048566 65 FERLRN-----EKKILVVLDNIWKH 84 (760)
Q Consensus 65 ~~~l~~-----~~r~LlVlDdv~~~ 84 (760)
...+.+ .+.=+||+|.+...
T Consensus 219 ~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 219 EDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHhccccCCCCEEEEeCchHh
Confidence 333332 36779999988543
No 259
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=85.87 E-value=0.77 Score=44.51 Aligned_cols=17 Identities=47% Similarity=0.661 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
+|+||||||+.+++...
T Consensus 58 ~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 58 PGVGKTHLARAVAGEAR 74 (254)
T ss_dssp TTSSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 69999999999998754
No 260
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=85.68 E-value=1.3 Score=55.44 Aligned_cols=74 Identities=22% Similarity=0.218 Sum_probs=48.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCcccc------chhhHHHHHHHHHHHHcCCcEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELR------EEVESSRASRIFERLRNEKKIL 75 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~~~~l~~~~r~L 75 (760)
+|+|||+||.++....... =..++|+++...++... ++.++.+.+ .+..+.....+.+..++.+.-+
T Consensus 1436 pGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~~l 1508 (2050)
T 3cmu_A 1436 ESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 1508 (2050)
T ss_dssp TTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred CCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHHHHhcCCCCE
Confidence 7999999999999876632 34688898888766554 556653321 1112233444444445567789
Q ss_pred EEEECCC
Q 048566 76 VVLDNIW 82 (760)
Q Consensus 76 lVlDdv~ 82 (760)
||+|.+.
T Consensus 1509 VVIDsi~ 1515 (2050)
T 3cmu_A 1509 IVVDSVA 1515 (2050)
T ss_dssp EEESCGG
T ss_pred EEEcChh
Confidence 9999985
No 261
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=85.49 E-value=0.85 Score=42.88 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=23.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP 35 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~ 35 (760)
||+||||+|..++.....+ .++ +..+++....
T Consensus 15 gGvGKTt~a~~la~~l~~~-G~~-V~v~d~D~q~ 46 (228)
T 2r8r_A 15 PGVGKTYAMLQAAHAQLRQ-GVR-VMAGVVETHG 46 (228)
T ss_dssp TTSSHHHHHHHHHHHHHHT-TCC-EEEEECCCTT
T ss_pred CCCcHHHHHHHHHHHHHHC-CCC-EEEEEeCCCC
Confidence 8999999999999887643 343 5556665433
No 262
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=85.43 E-value=1.2 Score=43.90 Aligned_cols=61 Identities=28% Similarity=0.364 Sum_probs=34.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
.|+||||||+.++.... ...+.++.. . +..... . .....+..+.+........++|+||+
T Consensus 82 ~GtGKTtl~~~i~~~~~-----~~~i~~~~~------~----~~~~~~----~-~~~~~i~~~~~~~~~~~~~i~~iDei 141 (278)
T 1iy2_A 82 PGVGKTHLARAVAGEAR-----VPFITASGS------D----FVEMFV----G-VGAARVRDLFETAKRHAPCIVFIDEI 141 (278)
T ss_dssp TTSSHHHHHHHHHHHTT-----CCEEEEEHH------H----HHHSTT----T-HHHHHHHHHHHHHHTSCSEEEEEETH
T ss_pred CcChHHHHHHHHHHHcC-----CCEEEecHH------H----HHHHHh----h-HHHHHHHHHHHHHHhcCCcEEehhhh
Confidence 69999999999998764 223444322 1 111100 0 01122344555544336789999999
Q ss_pred C
Q 048566 82 W 82 (760)
Q Consensus 82 ~ 82 (760)
+
T Consensus 142 d 142 (278)
T 1iy2_A 142 D 142 (278)
T ss_dssp H
T ss_pred H
Confidence 5
No 263
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=85.42 E-value=0.76 Score=42.76 Aligned_cols=35 Identities=23% Similarity=0.237 Sum_probs=26.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIK 38 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~ 38 (760)
||+||||+|..++.....+ -..++-|+.....+..
T Consensus 11 gG~GKTt~a~~la~~la~~--g~~vlliD~D~~~~~~ 45 (206)
T 4dzz_A 11 GGSGKTTAVINIATALSRS--GYNIAVVDTDPQMSLT 45 (206)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEECCTTCHHH
T ss_pred CCccHHHHHHHHHHHHHHC--CCeEEEEECCCCCCHH
Confidence 8999999999999987643 2457888887555443
No 264
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=85.13 E-value=1.8 Score=45.27 Aligned_cols=82 Identities=22% Similarity=0.311 Sum_probs=47.2
Q ss_pred CCCcHHHHHHHHHHHHhhh--------cCCC-eEEEEEecCCC-CHHHHHHHHHHH--hCccc-----cchhhH------
Q 048566 2 GGIGKTTLVKKVARQAMED--------KLFD-MVVFSEVSQIP-DIKRIQQEIAEK--LGLEL-----REEVES------ 58 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~--------~~F~-~~~wv~~~~~~-~~~~~~~~i~~~--l~~~~-----~~~~~~------ 58 (760)
.|+|||+|+.+++++.... ++=+ .++++-+.++. .+.++.+++.+. +.... .++...
T Consensus 156 ~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p~~~r~~~~ 235 (464)
T 3gqb_B 156 SGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTIERILTP 235 (464)
T ss_dssp TTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSCTHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCCHHHHHHHH
Confidence 5999999999999886531 1122 46677777665 445555554432 11000 011111
Q ss_pred HHHHHHHHHHH--cCCcEEEEEECCCC
Q 048566 59 SRASRIFERLR--NEKKILVVLDNIWK 83 (760)
Q Consensus 59 ~~~~~~~~~l~--~~~r~LlVlDdv~~ 83 (760)
...-.+-++++ +|+.+|+++||+..
T Consensus 236 ~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 236 RMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 11234455555 37999999999854
No 265
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=84.81 E-value=0.28 Score=56.36 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=21.9
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ 33 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~ 33 (760)
+|+|||++|+++++.... .-...+-++++.
T Consensus 530 ~GtGKT~lA~ala~~l~~--~~~~~i~i~~s~ 559 (758)
T 3pxi_A 530 TGVGKTELARALAESIFG--DEESMIRIDMSE 559 (758)
T ss_dssp TTSSHHHHHHHHHHHHHS--CTTCEEEEEGGG
T ss_pred CCCCHHHHHHHHHHHhcC--CCcceEEEechh
Confidence 699999999999998642 123456677654
No 266
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=84.69 E-value=0.43 Score=43.33 Aligned_cols=18 Identities=17% Similarity=0.170 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
++|+||||+|+++.....
T Consensus 11 ~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 11 GSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CTTSSHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 579999999999998753
No 267
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=84.47 E-value=3.2 Score=38.25 Aligned_cols=43 Identities=16% Similarity=0.114 Sum_probs=26.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAE 46 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 46 (760)
-|+||||.|+.+++....+ .. .+++..-.......+..++++.
T Consensus 9 DGsGKsTq~~~L~~~L~~~-g~-~v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 9 DGSGKSTQIQLLAQYLEKR-GK-KVILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp TTSSHHHHHHHHHHHHHHT-TC-CEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHC-CC-cEEEEECCCCCcHHHHHHHHhh
Confidence 4999999999999988743 22 3444443333344455555543
No 268
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=84.28 E-value=2 Score=49.25 Aligned_cols=70 Identities=16% Similarity=0.309 Sum_probs=38.5
Q ss_pred CCCcHHHHHHHHHHHHhhhc----CCCeEE-EEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDK----LFDMVV-FSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILV 76 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~----~F~~~~-wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~Ll 76 (760)
+|+|||++|+.+++...... .+...+ .++++.- +...............+.+.+...++.+|
T Consensus 216 ~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l-------------~~~~~~~g~~e~~l~~~~~~~~~~~~~iL 282 (758)
T 1r6b_X 216 SGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL-------------LAGTKYRGDFEKRFKALLKQLEQDTNSIL 282 (758)
T ss_dssp TTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC----------------CCCCCSSCHHHHHHHHHHHHSSSSCEEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH-------------hccccccchHHHHHHHHHHHHHhcCCeEE
Confidence 69999999999998864221 123332 2222211 00000111223344556666654467999
Q ss_pred EEECCCCc
Q 048566 77 VLDNIWKH 84 (760)
Q Consensus 77 VlDdv~~~ 84 (760)
++|+++..
T Consensus 283 ~IDEi~~l 290 (758)
T 1r6b_X 283 FIDEIHTI 290 (758)
T ss_dssp EETTTTTT
T ss_pred EEechHHH
Confidence 99999854
No 269
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=84.26 E-value=0.66 Score=52.70 Aligned_cols=63 Identities=22% Similarity=0.335 Sum_probs=38.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|.|||+||++++++... ..+.|+.+. +... ...+ .+..+..+++.-+...+.+|++|++
T Consensus 247 PGTGKT~LAraiA~elg~-----~~~~v~~~~----------l~sk----~~ge-se~~lr~lF~~A~~~~PsIIfIDEi 306 (806)
T 3cf2_A 247 PGTGKTLIARAVANETGA-----FFFLINGPE----------IMSK----LAGE-SESNLRKAFEEAEKNAPAIIFIDEL 306 (806)
T ss_dssp TTSCHHHHHHHHHTTTTC-----EEEEEEHHH----------HHSS----CTTH-HHHHHHHHHHHHTTSCSEEEEEESG
T ss_pred CCCCHHHHHHHHHHHhCC-----eEEEEEhHH----------hhcc----cchH-HHHHHHHHHHHHHHcCCeEEEEehh
Confidence 799999999999987542 234554321 1111 1111 2233445555555558899999999
Q ss_pred CCc
Q 048566 82 WKH 84 (760)
Q Consensus 82 ~~~ 84 (760)
+..
T Consensus 307 Dal 309 (806)
T 3cf2_A 307 DAI 309 (806)
T ss_dssp GGT
T ss_pred ccc
Confidence 754
No 270
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=83.89 E-value=2.5 Score=40.51 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=25.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEI 44 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 44 (760)
+|+||||+|.+++.+...+ .-..+++++... +...+.+.+
T Consensus 39 pG~GKT~l~l~~~~~~~~~-~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 39 TGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TTSSHHHHHHHHHHHHHHH-HCCCEEEEESSS--CHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh-cCCCceeecccC--CHHHHHHHH
Confidence 7999999999987654322 234577776554 344444443
No 271
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=83.82 E-value=0.25 Score=49.61 Aligned_cols=16 Identities=19% Similarity=0.378 Sum_probs=14.4
Q ss_pred CCCcHHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQA 17 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (760)
+|+|||++|+++++..
T Consensus 34 ~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 34 SGTGKELVARALHACS 49 (304)
T ss_dssp TTSCHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHhC
Confidence 6999999999999864
No 272
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=83.73 E-value=0.79 Score=44.24 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=27.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIK 38 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~ 38 (760)
||+||||+|..++......+ ..|+-|+.....++.
T Consensus 9 GGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~~l~ 43 (254)
T 3kjh_A 9 GGVGKTTVAAGLIKIMASDY--DKIYAVDGDPDSCLG 43 (254)
T ss_dssp SSHHHHHHHHHHHHHHTTTC--SCEEEEEECTTSCHH
T ss_pred CCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCcChH
Confidence 89999999999999887432 468888886655544
No 273
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=83.55 E-value=2.5 Score=40.48 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=19.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVS 32 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~ 32 (760)
.|+|||||++.++....... -..+++++..
T Consensus 39 nGsGKSTLl~~i~~~~~~~~-~~~~~~~~~~ 68 (251)
T 2ehv_A 39 TGTGKTTFAAQFIYKGAEEY-GEPGVFVTLE 68 (251)
T ss_dssp TTSSHHHHHHHHHHHHHHHH-CCCEEEEESS
T ss_pred CCCCHHHHHHHHHHHHHHhC-CCeEEEEEcc
Confidence 69999999999985433111 2456666543
No 274
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=83.16 E-value=3.9 Score=41.26 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=29.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEK 47 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 47 (760)
+|+||||+|..++...... =..++|++.. -+...+...++..
T Consensus 55 pG~GKTt~al~ia~~~a~~--g~~Vl~fSlE--ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 55 PSMGKTSLMMNMVLSALND--DRGVAVFSLE--MSAEQLALRALSD 96 (338)
T ss_dssp TTSCHHHHHHHHHHHHHHT--TCEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHc--CCeEEEEeCC--CCHHHHHHHHHHH
Confidence 7999999999999887642 2467787654 3556666666543
No 275
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=83.08 E-value=0.35 Score=49.33 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=22.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCe-EEEEEecCCC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDM-VVFSEVSQIP 35 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~-~~wv~~~~~~ 35 (760)
+|+|||+|++++++....+ +-+. ++++-+.++.
T Consensus 184 ~g~GKT~Ll~~Ia~~i~~~-~~dv~~V~~lIGER~ 217 (427)
T 3l0o_A 184 PKAGKTTILKEIANGIAEN-HPDTIRIILLIDERP 217 (427)
T ss_dssp TTCCHHHHHHHHHHHHHHH-CTTSEEEEEECSCCH
T ss_pred CCCChhHHHHHHHHHHhhc-CCCeEEEEEEeccCc
Confidence 6999999999999986532 2232 3556666543
No 276
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=82.82 E-value=0.48 Score=55.17 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=20.5
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ 33 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~ 33 (760)
.|+|||++|+++++..... -...+.++++.
T Consensus 597 ~GtGKT~lA~~la~~~~~~--~~~~i~i~~~~ 626 (854)
T 1qvr_A 597 TGVGKTELAKTLAATLFDT--EEAMIRIDMTE 626 (854)
T ss_dssp SSSSHHHHHHHHHHHHHSS--GGGEEEECTTT
T ss_pred CCCCHHHHHHHHHHHhcCC--CCcEEEEechh
Confidence 6999999999999886421 12345566554
No 277
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=82.74 E-value=0.53 Score=54.07 Aligned_cols=73 Identities=15% Similarity=0.208 Sum_probs=38.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+|||++|+++++... ...+-+++++..... .+.+.++.+... ...+....+...+.......|+||++
T Consensus 497 ~GtGKT~la~~la~~l~-----~~~~~i~~s~~~~~~----~~~~l~g~~~g~-~g~~~~~~l~~~~~~~~~~vl~lDEi 566 (758)
T 1r6b_X 497 TGVGKTEVTVQLSKALG-----IELLRFDMSEYMERH----TVSRLIGAPPGY-VGFDQGGLLTDAVIKHPHAVLLLDEI 566 (758)
T ss_dssp TTSSHHHHHHHHHHHHT-----CEEEEEEGGGCSSSS----CCSSSCCCCSCS-HHHHHTTHHHHHHHHCSSEEEEEETG
T ss_pred CCCcHHHHHHHHHHHhc-----CCEEEEechhhcchh----hHhhhcCCCCCC-cCccccchHHHHHHhCCCcEEEEeCc
Confidence 69999999999998762 235566665432110 001111221110 00011112333343346789999999
Q ss_pred CCc
Q 048566 82 WKH 84 (760)
Q Consensus 82 ~~~ 84 (760)
+..
T Consensus 567 ~~~ 569 (758)
T 1r6b_X 567 EKA 569 (758)
T ss_dssp GGS
T ss_pred ccc
Confidence 865
No 278
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=82.56 E-value=3.4 Score=40.00 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=23.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ 33 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~ 33 (760)
||+||||+|..++.....+ -..++-|+...
T Consensus 12 gGvGKTt~a~~LA~~la~~--g~~VlliD~D~ 41 (263)
T 1hyq_A 12 GGTGKTTITANLGVALAQL--GHDVTIVDADI 41 (263)
T ss_dssp SCSCHHHHHHHHHHHHHHT--TCCEEEEECCC
T ss_pred CCCCHHHHHHHHHHHHHhC--CCcEEEEECCC
Confidence 8999999999999887643 23577888764
No 279
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=82.40 E-value=2.9 Score=43.81 Aligned_cols=28 Identities=36% Similarity=0.273 Sum_probs=20.3
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEV 31 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~ 31 (760)
+|+||||+|.+++.....+ .. .++-++.
T Consensus 109 ~G~GKTTt~~kLA~~l~~~-G~-kVllv~~ 136 (443)
T 3dm5_A 109 QGSGKTTTVAKLARYFQKR-GY-KVGVVCS 136 (443)
T ss_dssp TTSSHHHHHHHHHHHHHTT-TC-CEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHC-CC-eEEEEeC
Confidence 7999999999999887643 22 3555554
No 280
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=82.32 E-value=4.6 Score=42.41 Aligned_cols=80 Identities=18% Similarity=0.244 Sum_probs=41.8
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCC-CCHHHHHHHHHHHhCcccc----chhhHHHHHHHHHHHHcCCcEE
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQI-PDIKRIQQEIAEKLGLELR----EEVESSRASRIFERLRNEKKIL 75 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~~~l~~~~r~L 75 (760)
.||+||||+|.+++.....+.. ..+.-+++... ......++......+.+.- ..+..+.+......+..+.-=+
T Consensus 108 ~~GvGKTT~a~~LA~~l~~~~G-~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~~~~~D~ 186 (433)
T 2xxa_A 108 LQGAGKTTSVGKLGKFLREKHK-KKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDV 186 (433)
T ss_dssp STTSSHHHHHHHHHHHHHHTSC-CCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHHHTTCSE
T ss_pred CCCCCHHHHHHHHHHHHHHhcC-CeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHHhCCCCE
Confidence 3899999999999988764312 35667776543 2333333333444433211 1122333344444444212225
Q ss_pred EEEECC
Q 048566 76 VVLDNI 81 (760)
Q Consensus 76 lVlDdv 81 (760)
+|+|-.
T Consensus 187 VIIDTp 192 (433)
T 2xxa_A 187 LLVDTA 192 (433)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 666764
No 281
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=82.29 E-value=3.3 Score=41.07 Aligned_cols=79 Identities=20% Similarity=0.158 Sum_probs=43.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCccccc----hhhHHHHHHHHHHHHcCCcEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGLELRE----EVESSRASRIFERLRNEKKILV 76 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~~l~~~~r~Ll 76 (760)
+|+||||++..++.....+ -..+.+++..... .....++...+..+.+.-. .+..+.+....+.+..+.-=++
T Consensus 107 ~G~GKTT~~~~la~~~~~~--g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~~~~D~V 184 (297)
T 1j8m_F 107 QGTGKTTTAGKLAYFYKKK--GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEII 184 (297)
T ss_dssp SCSSTTHHHHHHHHHHHHT--TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHHTTCSEE
T ss_pred CCCCHHHHHHHHHHHHHHC--CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 7999999999999887633 2357777765432 2333344455555443211 1223333445555542122367
Q ss_pred EEECCC
Q 048566 77 VLDNIW 82 (760)
Q Consensus 77 VlDdv~ 82 (760)
|+|-.-
T Consensus 185 iIDTpg 190 (297)
T 1j8m_F 185 IVDTAG 190 (297)
T ss_dssp EEECCC
T ss_pred EEeCCC
Confidence 777643
No 282
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=81.32 E-value=0.67 Score=41.62 Aligned_cols=18 Identities=17% Similarity=0.113 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
+.|+||||+|+.+.....
T Consensus 9 ~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 9 PDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp SSSSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999987753
No 283
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=81.13 E-value=1.7 Score=43.93 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=27.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRI 40 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 40 (760)
||+||||+|.+++.....+ -..++-|+.....++...
T Consensus 23 GGvGKTTvA~~LA~~lA~~--G~rVLlvD~D~~~~l~~~ 59 (324)
T 3zq6_A 23 GGVGKTTISAATALWMARS--GKKTLVISTDPAHSLSDS 59 (324)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEECCSSCCHHHH
T ss_pred CCchHHHHHHHHHHHHHHC--CCcEEEEeCCCCcCHHHH
Confidence 8999999999999887643 345777887766665543
No 284
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=81.10 E-value=4.5 Score=42.91 Aligned_cols=83 Identities=16% Similarity=0.262 Sum_probs=46.0
Q ss_pred CCCcHHHHHH-HHHHHHhh----hcCCC-eEEEEEecCCC-CHHHHHHHHHHHhCcccc------chhh-H------HHH
Q 048566 2 GGIGKTTLVK-KVARQAME----DKLFD-MVVFSEVSQIP-DIKRIQQEIAEKLGLELR------EEVE-S------SRA 61 (760)
Q Consensus 2 gGiGKTtLA~-~~~~~~~~----~~~F~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~------~~~~-~------~~~ 61 (760)
.|+|||+||. .+.|.... .++-+ .++++-+.++. .+.++.+++...=..+.. .++. . ...
T Consensus 171 ~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~~a 250 (510)
T 2ck3_A 171 RQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSG 250 (510)
T ss_dssp TTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHHHHHHHHHH
Confidence 5999999964 66666542 12345 47788888765 445666665542111110 1111 1 111
Q ss_pred HHHHHHHH-cCCcEEEEEECCCCc
Q 048566 62 SRIFERLR-NEKKILVVLDNIWKH 84 (760)
Q Consensus 62 ~~~~~~l~-~~~r~LlVlDdv~~~ 84 (760)
-.+-++++ +|+.+||++||+...
T Consensus 251 ~tiAEyfrd~G~dVLli~Dsltr~ 274 (510)
T 2ck3_A 251 CSMGEYFRDNGKHALIIYDDLSKQ 274 (510)
T ss_dssp HHHHHHHHTTTCEEEEEEETHHHH
T ss_pred HHHHHHHHHcCCcEEEEEcCHHHH
Confidence 22334443 379999999998543
No 285
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=80.96 E-value=1.5 Score=42.82 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=24.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQI 34 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~ 34 (760)
||+||||+|..++.....+ =..++-||....
T Consensus 10 GGvGKTT~a~nLA~~la~~--G~~VlliD~D~q 40 (269)
T 1cp2_A 10 GGIGKSTTTQNLTSGLHAM--GKTIMVVGCDPK 40 (269)
T ss_dssp TTSSHHHHHHHHHHHHHTT--TCCEEEEEECTT
T ss_pred CCCcHHHHHHHHHHHHHHC--CCcEEEEcCCCC
Confidence 8999999999999887633 235778887643
No 286
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=80.86 E-value=0.44 Score=45.05 Aligned_cols=101 Identities=15% Similarity=0.110 Sum_probs=51.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccc---hhhHHHHHHHHHHHHcCCcEEEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELRE---EVESSRASRIFERLRNEKKILVVL 78 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~~l~~~~r~LlVl 78 (760)
.|.||||+|..++++.... -..++.+...... + ...+++++++..... ....+..+.+.+.+..++.-+||+
T Consensus 21 mGsGKTT~ll~~~~r~~~~--g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvViI 95 (223)
T 2b8t_A 21 MFAGKTAELIRRLHRLEYA--DVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVIGI 95 (223)
T ss_dssp TTSCHHHHHHHHHHHHHHT--TCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEEEE
T ss_pred CCCcHHHHHHHHHHHHHhc--CCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEEEE
Confidence 4999999999999887633 2334444433221 1 223455555543221 111222222222222223459999
Q ss_pred ECCCCc--cccccccccccCCCCCcEEEEeeCCH
Q 048566 79 DNIWKH--LDLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 79 Ddv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
|.+... ++++.+.. +.+ .|-.||+|-++.
T Consensus 96 DEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 96 DEVQFFDDRICEVANI-LAE--NGFVVIISGLDK 126 (223)
T ss_dssp CSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSB
T ss_pred ecCccCcHHHHHHHHH-HHh--CCCeEEEEeccc
Confidence 998643 23333322 222 267788888853
No 287
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=80.69 E-value=1.2 Score=43.43 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=27.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKR 39 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 39 (760)
||+||||+|..++.... ++ ..|+-|++....+...
T Consensus 37 GGvGKTT~a~~LA~~la-~g--~~VlliD~D~~~~~~~ 71 (267)
T 3k9g_A 37 GGVGKSTSAIILATLLS-KN--NKVLLIDMDTQASITS 71 (267)
T ss_dssp SSSCHHHHHHHHHHHHT-TT--SCEEEEEECTTCHHHH
T ss_pred CCchHHHHHHHHHHHHH-CC--CCEEEEECCCCCCHHH
Confidence 89999999999999887 42 4678888876554433
No 288
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=80.65 E-value=2.9 Score=51.56 Aligned_cols=76 Identities=21% Similarity=0.214 Sum_probs=48.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccc------hhhHHHHHHHHHHHHcCCcEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELRE------EVESSRASRIFERLRNEKKIL 75 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~~~l~~~~r~L 75 (760)
+|+||||||.+++...... =..++|++.....+.. .++.++.+... .+.++....+.....+.+.-+
T Consensus 392 pGsGKTtLaLq~a~~~~~~--G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~~lv~~~~~~l 464 (1706)
T 3cmw_A 392 ESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 464 (1706)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred CCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHHHHHHhcCCCE
Confidence 6999999999999887633 3478999988777653 25666654321 222233333333333346669
Q ss_pred EEEECCCCc
Q 048566 76 VVLDNIWKH 84 (760)
Q Consensus 76 lVlDdv~~~ 84 (760)
||+|-+...
T Consensus 465 VVIDSL~al 473 (1706)
T 3cmw_A 465 IVVDSVAAL 473 (1706)
T ss_dssp EEESCSTTC
T ss_pred EEECCHHHh
Confidence 999998654
No 289
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=80.62 E-value=4.4 Score=42.83 Aligned_cols=79 Identities=19% Similarity=0.256 Sum_probs=44.6
Q ss_pred CCCcHHHHHH-HHHHHHhhhcCCCe-EEEEEecCCC-CHHHHHHHHHHHhCcccc------chhh-HH------HHHHHH
Q 048566 2 GGIGKTTLVK-KVARQAMEDKLFDM-VVFSEVSQIP-DIKRIQQEIAEKLGLELR------EEVE-SS------RASRIF 65 (760)
Q Consensus 2 gGiGKTtLA~-~~~~~~~~~~~F~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~~------~~~~-~~------~~~~~~ 65 (760)
.|+|||+||. .+++.. .-+. ++++-+.++. .+.++.+++.+.=..+.. .++. .. ..-.+-
T Consensus 171 ~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~~a~tiA 246 (502)
T 2qe7_A 171 RQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPYAGCAMG 246 (502)
T ss_dssp SSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 5899999965 666654 2454 5777787765 445666666542111110 1111 11 112333
Q ss_pred HHHH-cCCcEEEEEECCCCc
Q 048566 66 ERLR-NEKKILVVLDNIWKH 84 (760)
Q Consensus 66 ~~l~-~~~r~LlVlDdv~~~ 84 (760)
++++ +|+.+||++||+...
T Consensus 247 Eyfrd~G~dVLl~~Dsltr~ 266 (502)
T 2qe7_A 247 EYFMYKGKHALVVYDDLSKQ 266 (502)
T ss_dssp HHHHTTTCEEEEEEECHHHH
T ss_pred HHHHHcCCcEEEEEecHHHH
Confidence 4443 379999999998543
No 290
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=80.58 E-value=5.7 Score=39.44 Aligned_cols=78 Identities=19% Similarity=0.219 Sum_probs=40.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCccccc----hhhHHH-HHHHHHHHHcCCcEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGLELRE----EVESSR-ASRIFERLRNEKKIL 75 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~-~~~~~~~l~~~~r~L 75 (760)
+|+||||++..++...... -..+.+++..... ...+-++..++..+.+.-. .+.... ...+...+.. +.-+
T Consensus 113 ~GsGKTTl~~~LA~~l~~~--g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~~~-~~dv 189 (306)
T 1vma_A 113 NGTGKTTSCGKLAKMFVDE--GKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALAR-NKDV 189 (306)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHHHT-TCSE
T ss_pred CCChHHHHHHHHHHHHHhc--CCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHHhc-CCCE
Confidence 6999999999999887643 2346677654321 1222233445555443211 111111 1233333443 4447
Q ss_pred EEEECCC
Q 048566 76 VVLDNIW 82 (760)
Q Consensus 76 lVlDdv~ 82 (760)
+|+|-.-
T Consensus 190 vIiDtpg 196 (306)
T 1vma_A 190 VIIDTAG 196 (306)
T ss_dssp EEEEECC
T ss_pred EEEECCC
Confidence 7888553
No 291
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=80.43 E-value=4.3 Score=42.89 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=27.5
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIA 45 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 45 (760)
+|+||||+|.+++.+...+ =..++|++.... ..++...++
T Consensus 206 pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms--~~ql~~R~~ 245 (444)
T 3bgw_A 206 PSMGKTAFALKQAKNMSDN--DDVVNLHSLEMG--KKENIKRLI 245 (444)
T ss_dssp SSSSHHHHHHHHHHHHHHT--TCEEEEECSSSC--TTHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHc--CCEEEEEECCCC--HHHHHHHHH
Confidence 7999999999999987644 236888866543 334444444
No 292
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=80.13 E-value=0.79 Score=41.83 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
+.|+||||+|+.++...
T Consensus 13 ~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 13 LMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999999775
No 293
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=80.13 E-value=4.3 Score=42.88 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=43.8
Q ss_pred CCCcHHHHH-HHHHHHHhhhcCCC-eEEEEEecCCC-CHHHHHHHHHHHhCcccc------chh-hHH------HHHHHH
Q 048566 2 GGIGKTTLV-KKVARQAMEDKLFD-MVVFSEVSQIP-DIKRIQQEIAEKLGLELR------EEV-ESS------RASRIF 65 (760)
Q Consensus 2 gGiGKTtLA-~~~~~~~~~~~~F~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~------~~~-~~~------~~~~~~ 65 (760)
.|+|||+|| ..+.++. +-+ .++++-+.++. .+.++.+++.+.=..+.. .++ ... ..-.+-
T Consensus 171 ~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~~~a~tiA 246 (513)
T 3oaa_A 171 RQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPYAGCAMG 246 (513)
T ss_dssp SSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHHHHHHHHHH
Confidence 489999997 4666642 234 36788888765 455666665443111100 111 100 111223
Q ss_pred HHHH-cCCcEEEEEECCCCc
Q 048566 66 ERLR-NEKKILVVLDNIWKH 84 (760)
Q Consensus 66 ~~l~-~~~r~LlVlDdv~~~ 84 (760)
++++ +|+.+||++||+...
T Consensus 247 Eyfrd~G~dVLli~Dsltr~ 266 (513)
T 3oaa_A 247 EYFRDRGEDALIIYDDLSKQ 266 (513)
T ss_dssp HHHHHTTCEEEEEEETHHHH
T ss_pred HHHHhcCCCEEEEecChHHH
Confidence 3332 379999999998543
No 294
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=80.05 E-value=1.6 Score=49.92 Aligned_cols=17 Identities=35% Similarity=0.669 Sum_probs=15.4
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
+|+|||++|+.+++...
T Consensus 210 pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 210 PGVGKTAIAEGLAQQII 226 (758)
T ss_dssp TTTTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 79999999999999863
No 295
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=80.00 E-value=1.6 Score=44.18 Aligned_cols=35 Identities=26% Similarity=0.296 Sum_probs=26.5
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIK 38 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~ 38 (760)
||+||||+|.+++...... -..++-|+.....++.
T Consensus 25 GGvGKTt~a~~lA~~la~~--g~~vllid~D~~~~l~ 59 (334)
T 3iqw_A 25 GGVGKTTTSCSLAIQLAKV--RRSVLLLSTDPAHNLS 59 (334)
T ss_dssp TTSSHHHHHHHHHHHHTTS--SSCEEEEECCSSCHHH
T ss_pred CCccHHHHHHHHHHHHHhC--CCcEEEEECCCCCChh
Confidence 8999999999999887633 3467888877555444
No 296
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=79.99 E-value=1.6 Score=43.68 Aligned_cols=32 Identities=22% Similarity=0.127 Sum_probs=24.5
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP 35 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~ 35 (760)
||+||||+|..++...... =..|+-|++....
T Consensus 50 GGvGKTT~a~nLA~~La~~--G~~VlliD~D~~~ 81 (307)
T 3end_A 50 GGIGKSTTSSNLSAAFSIL--GKRVLQIGCDPKH 81 (307)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEEESSSC
T ss_pred CCccHHHHHHHHHHHHHHC--CCeEEEEeCCCCC
Confidence 8999999999999887643 2357788876433
No 297
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=79.93 E-value=2.6 Score=45.23 Aligned_cols=39 Identities=23% Similarity=0.399 Sum_probs=27.9
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEI 44 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i 44 (760)
.|+|||+|+.++++... -+.++++-+.++. .+.++++++
T Consensus 241 ~g~GKT~L~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 241 FGAGKTVVQHQIAKWSD----VDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp TTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHH
Confidence 58999999999988743 4678888888764 344444443
No 298
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=79.70 E-value=0.84 Score=42.33 Aligned_cols=17 Identities=53% Similarity=0.548 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
+.|+||||+|+.++...
T Consensus 33 ~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 33 YMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 57999999999999876
No 299
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=79.67 E-value=6.9 Score=41.34 Aligned_cols=42 Identities=14% Similarity=0.093 Sum_probs=29.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAE 46 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 46 (760)
+|+||||+|..++.....+. =..++|++... +...+...++.
T Consensus 209 pg~GKT~lal~ia~~~a~~~-g~~vl~~slE~--~~~~l~~R~~~ 250 (444)
T 2q6t_A 209 PAMGKTAFALTIAQNAALKE-GVGVGIYSLEM--PAAQLTLRMMC 250 (444)
T ss_dssp TTSCHHHHHHHHHHHHHHTT-CCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhC-CCeEEEEECCC--CHHHHHHHHHH
Confidence 79999999999998876421 23588877653 45566666553
No 300
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=79.66 E-value=1.2 Score=47.89 Aligned_cols=17 Identities=47% Similarity=0.661 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
+|+||||||++++....
T Consensus 73 pGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 73 PGVGKTHLARAVAGEAR 89 (499)
T ss_dssp SSSSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 69999999999998754
No 301
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=79.33 E-value=0.83 Score=41.36 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVAR 15 (760)
Q Consensus 1 mgGiGKTtLA~~~~~ 15 (760)
++|+||||+|+++..
T Consensus 10 ~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 10 CPGSGKSTWAREFIA 24 (181)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHh
Confidence 479999999999987
No 302
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=79.15 E-value=3.6 Score=43.96 Aligned_cols=39 Identities=18% Similarity=0.289 Sum_probs=28.3
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCH-HHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDI-KRIQQEI 44 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~-~~~~~~i 44 (760)
.|+|||+|++++++... -+.++++-+.++... .++++++
T Consensus 236 ~g~GKT~L~~~ia~~~~----~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 236 AGSGKTVTQHQLAKWSD----AQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp CSHHHHHHHHHHHHHSS----CSEEEEEECCSSSSHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHH
Confidence 58999999999887632 467888888887754 4455443
No 303
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=79.10 E-value=1.8 Score=42.89 Aligned_cols=31 Identities=26% Similarity=0.304 Sum_probs=24.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQI 34 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~ 34 (760)
||+||||+|..++.....+ =..|+-||+...
T Consensus 11 GGvGKTT~a~nLA~~La~~--G~rVlliD~D~q 41 (289)
T 2afh_E 11 GGIGKSTTTQNLVAALAEM--GKKVMIVGCDPK 41 (289)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEEECSS
T ss_pred CcCcHHHHHHHHHHHHHHC--CCeEEEEecCCC
Confidence 8999999999999887643 235778887643
No 304
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=78.97 E-value=1.8 Score=42.74 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=27.9
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC-CCCHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ-IPDIKRIQ 41 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~ 41 (760)
||+||||+|..++...... -..|+-||... ..+....+
T Consensus 14 GGvGKTT~a~nLA~~La~~--G~~VlliD~D~~q~~l~~~l 52 (286)
T 2xj4_A 14 GGAGKSTIAVHLVTALLYG--GAKVAVIDLDLRQRTSARFF 52 (286)
T ss_dssp SCTTHHHHHHHHHHHHHHT--TCCEEEEECCTTTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHC--CCcEEEEECCCCCCCHHHHh
Confidence 8999999999999887643 23577788876 55554443
No 305
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=78.87 E-value=5.9 Score=39.19 Aligned_cols=78 Identities=23% Similarity=0.227 Sum_probs=40.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCH-HHHHHHHHHHhCcccc----chhhHHHHHHHHHHHHcCCcEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDI-KRIQQEIAEKLGLELR----EEVESSRASRIFERLRNEKKILV 76 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~-~~~~~~i~~~l~~~~~----~~~~~~~~~~~~~~l~~~~r~Ll 76 (760)
+|+||||+|..++...... -..+.+++....... ...+....+..+.+.- ..+..+........+...+.=+|
T Consensus 107 ~G~GKTT~~~~la~~~~~~--~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~~~~~D~v 184 (295)
T 1ls1_A 107 QGSGKTTTAAKLALYYKGK--GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLI 184 (295)
T ss_dssp TTTTHHHHHHHHHHHHHHT--TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHHTCCEE
T ss_pred CCCCHHHHHHHHHHHHHHc--CCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 7999999999999887643 234677776433221 1223344444443321 11222222333344421244467
Q ss_pred EEECC
Q 048566 77 VLDNI 81 (760)
Q Consensus 77 VlDdv 81 (760)
|+|--
T Consensus 185 iiDtp 189 (295)
T 1ls1_A 185 LVDTA 189 (295)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 77865
No 306
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=78.58 E-value=1.4 Score=46.88 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=15.6
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
+|+|||++|+++++...
T Consensus 72 pGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 72 PGTGKTALALAIAQELG 88 (456)
T ss_dssp TTSSHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHhC
Confidence 79999999999999865
No 307
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=78.53 E-value=0.91 Score=40.79 Aligned_cols=13 Identities=38% Similarity=0.608 Sum_probs=12.1
Q ss_pred CCCCcHHHHHHHH
Q 048566 1 MGGIGKTTLVKKV 13 (760)
Q Consensus 1 mgGiGKTtLA~~~ 13 (760)
++|+||||+|+.+
T Consensus 9 ~~GsGKsT~a~~L 21 (179)
T 3lw7_A 9 MPGSGKSEFAKLL 21 (179)
T ss_dssp CTTSCHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 5799999999999
No 308
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=78.38 E-value=1.9 Score=41.23 Aligned_cols=32 Identities=19% Similarity=0.147 Sum_probs=24.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQI 34 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~ 34 (760)
||+||||+|..++...... +=..++-|++...
T Consensus 14 GGvGKTt~a~~LA~~la~~-~g~~VlliD~D~~ 45 (245)
T 3ea0_A 14 GGDGGSCIAANFAFALSQE-PDIHVLAVDISLP 45 (245)
T ss_dssp TTSSHHHHHHHHHHHHTTS-TTCCEEEEECCTT
T ss_pred CCcchHHHHHHHHHHHHhC-cCCCEEEEECCCC
Confidence 8999999999999987632 1235778887543
No 309
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=78.33 E-value=0.99 Score=40.73 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
++|.||||+|+.++....
T Consensus 12 ~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 12 FMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CTTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 479999999999997753
No 310
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=78.18 E-value=4.3 Score=43.01 Aligned_cols=79 Identities=22% Similarity=0.274 Sum_probs=44.6
Q ss_pred CCCcHHHHHH-HHHHHHhhhcCCCe-EEEEEecCCC-CHHHHHHHHHHHhCcccc------chhh-H------HHHHHHH
Q 048566 2 GGIGKTTLVK-KVARQAMEDKLFDM-VVFSEVSQIP-DIKRIQQEIAEKLGLELR------EEVE-S------SRASRIF 65 (760)
Q Consensus 2 gGiGKTtLA~-~~~~~~~~~~~F~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~~------~~~~-~------~~~~~~~ 65 (760)
.|+|||+||. .+++... -+. ++++-+.++. .+.++.+++...=..+.. .++. . ...-.+-
T Consensus 184 ~g~GKT~Lal~~I~~~~~----~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~~a~tiA 259 (515)
T 2r9v_A 184 RQTGKTAIAIDTIINQKG----QGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAPYAGCAMG 259 (515)
T ss_dssp TTSSHHHHHHHHHHTTTT----TTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 5999999965 6666542 454 5777777765 445666666542111100 1111 1 1112333
Q ss_pred HHHH-cCCcEEEEEECCCCc
Q 048566 66 ERLR-NEKKILVVLDNIWKH 84 (760)
Q Consensus 66 ~~l~-~~~r~LlVlDdv~~~ 84 (760)
++++ +|+.+||++||+...
T Consensus 260 Eyfrd~G~dVLli~DslTr~ 279 (515)
T 2r9v_A 260 EYFAYSGRDALVVYDDLSKH 279 (515)
T ss_dssp HHHHTTTCEEEEEEETHHHH
T ss_pred HHHHHcCCcEEEEeccHHHH
Confidence 4443 379999999998543
No 311
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=78.17 E-value=4.6 Score=42.28 Aligned_cols=48 Identities=21% Similarity=0.188 Sum_probs=28.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCC-CCHHHHHHHHHHHhCcc
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQI-PDIKRIQQEIAEKLGLE 51 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~ 51 (760)
+|+||||++..++.....+ . ..+..++.... ....+.++...+..+.+
T Consensus 106 ~GsGKTTt~~kLA~~l~~~-G-~kVllv~~D~~r~~a~eqL~~~~~~~gv~ 154 (433)
T 3kl4_A 106 QGSGKTTTAGKLAYFYKKR-G-YKVGLVAADVYRPAAYDQLLQLGNQIGVQ 154 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHT-T-CCEEEEEECCSCHHHHHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHHHHHHHc-C-CeEEEEecCccchhHHHHHHHHHHhcCCc
Confidence 7999999999999887643 2 24556665432 22333344444554443
No 312
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=78.07 E-value=1.1 Score=41.17 Aligned_cols=18 Identities=33% Similarity=0.521 Sum_probs=16.0
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
+.|+||||+|+.+.....
T Consensus 9 ~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 9 IPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp CTTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 479999999999998765
No 313
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=78.02 E-value=1.9 Score=44.55 Aligned_cols=30 Identities=23% Similarity=0.352 Sum_probs=23.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ 33 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~ 33 (760)
||+||||+|..++.....+ -..|+-|++..
T Consensus 153 GGvGKTT~a~nLA~~La~~--g~rVlliD~D~ 182 (373)
T 3fkq_A 153 GGVGTSTVAAACAIAHANM--GKKVFYLNIEQ 182 (373)
T ss_dssp TTSSHHHHHHHHHHHHHHH--TCCEEEEECCT
T ss_pred CCChHHHHHHHHHHHHHhC--CCCEEEEECCC
Confidence 8999999999999887643 23588888763
No 314
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=77.89 E-value=2.1 Score=41.38 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=25.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC-CCCHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ-IPDIK 38 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~-~~~~~ 38 (760)
||+||||+|..++.....+ =..++-|+... ..+..
T Consensus 12 gGvGKTt~a~~LA~~la~~--g~~VlliD~D~~~~~~~ 47 (260)
T 3q9l_A 12 GGVGKTTSSAAIATGLAQK--GKKTVVIDFAIGLRNLD 47 (260)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEECCCSSCCHH
T ss_pred CCCcHHHHHHHHHHHHHhC--CCcEEEEECCCCCCChh
Confidence 8999999999999987743 23577888765 34443
No 315
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=77.81 E-value=1 Score=40.84 Aligned_cols=17 Identities=47% Similarity=0.667 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
++|+||||+|+.++...
T Consensus 19 ~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 19 TPGVGKTTLGKELASKS 35 (180)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999999999775
No 316
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=77.71 E-value=1.1 Score=40.99 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
++|+||||+|+.+.....
T Consensus 11 ~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 11 VPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CTTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 479999999999998765
No 317
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=77.58 E-value=1 Score=41.26 Aligned_cols=17 Identities=35% Similarity=0.348 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
++|+||||+|+.+....
T Consensus 13 ~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 13 HPATGKTTLSQALATGL 29 (193)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 57999999999998765
No 318
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=77.54 E-value=1.7 Score=41.47 Aligned_cols=30 Identities=23% Similarity=0.238 Sum_probs=23.9
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ 33 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~ 33 (760)
||+||||+|..++.....+ -..++-|+...
T Consensus 12 gGvGKTt~a~~LA~~la~~--g~~VlliD~D~ 41 (237)
T 1g3q_A 12 GGTGKTTVTANLSVALGDR--GRKVLAVDGDL 41 (237)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEECCT
T ss_pred CCCCHHHHHHHHHHHHHhc--CCeEEEEeCCC
Confidence 8999999999999987643 24677888764
No 319
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=77.54 E-value=7.9 Score=41.05 Aligned_cols=41 Identities=12% Similarity=0.231 Sum_probs=28.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIA 45 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 45 (760)
+|+||||+|..++....... -..++|++... +...+.+.++
T Consensus 212 pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 212 PSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHHH
Confidence 69999999999999876432 23588887543 3455555543
No 320
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=77.45 E-value=15 Score=33.57 Aligned_cols=17 Identities=41% Similarity=0.624 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
..|.||||+|+.++...
T Consensus 37 ~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 37 VSGSGKTTIAHGVADET 53 (200)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 36999999999998765
No 321
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=77.37 E-value=4.9 Score=43.34 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=29.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAE 46 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 46 (760)
+|+||||+|.+++.+...+ +=..++|++... +..++.+.++.
T Consensus 251 pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~ 292 (503)
T 1q57_A 251 SGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIG 292 (503)
T ss_dssp SCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHH
Confidence 7999999999999887633 123588887654 45566666543
No 322
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=77.13 E-value=2 Score=43.84 Aligned_cols=30 Identities=30% Similarity=0.310 Sum_probs=22.3
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ 33 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~ 33 (760)
||+||||+|.+++...... =..++-|+...
T Consensus 35 GGvGKTTvA~~LA~~lA~~--G~rVLlvD~D~ 64 (349)
T 3ug7_A 35 GGVGKTTMSAATGVYLAEK--GLKVVIVSTDP 64 (349)
T ss_dssp SSTTHHHHHHHHHHHHHHS--SCCEEEEECCT
T ss_pred CCccHHHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence 8999999999999887643 23466666543
No 323
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=76.86 E-value=1.2 Score=39.91 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
+.|+||||+|+.++....
T Consensus 15 ~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 15 FMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 579999999999998754
No 324
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=76.84 E-value=1.8 Score=42.19 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=24.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP 35 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~ 35 (760)
||+||||+|..++.....+ -..++-|+.....
T Consensus 28 GGvGKTT~a~nLA~~la~~--G~~VlliD~D~~~ 59 (262)
T 2ph1_A 28 GGVGKSTVTALLAVHYARQ--GKKVGILDADFLG 59 (262)
T ss_dssp SCTTHHHHHHHHHHHHHHT--TCCEEEEECCSSC
T ss_pred CCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCC
Confidence 8999999999999887643 2357778876543
No 325
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=76.64 E-value=4.1 Score=51.00 Aligned_cols=76 Identities=21% Similarity=0.208 Sum_probs=47.5
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCcccc------chhhHHHHHHHHHHHHcCCcEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELR------EEVESSRASRIFERLRNEKKIL 75 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~~~~l~~~~r~L 75 (760)
+|+||||||.+++...... =..++|++.....+.. .++.++.+.. ..+.++....+.....+.+.-+
T Consensus 392 pGsGKTtLaLqia~~~a~~--G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~~~lv~~~~~~l 464 (2050)
T 3cmu_A 392 ESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 464 (2050)
T ss_dssp TTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred CCCCHHHHHHHHHHHHHhc--CCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHHHHHHHhcCCcE
Confidence 6999999999999887633 2468999988776643 2566665422 1222233333332222345669
Q ss_pred EEEECCCCc
Q 048566 76 VVLDNIWKH 84 (760)
Q Consensus 76 lVlDdv~~~ 84 (760)
||+|-+...
T Consensus 465 IVIDSL~al 473 (2050)
T 3cmu_A 465 IVVDSVAAL 473 (2050)
T ss_dssp EEESCGGGC
T ss_pred EEECCHHHh
Confidence 999998643
No 326
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=76.30 E-value=2.3 Score=42.17 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=24.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPD 36 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~ 36 (760)
||+||||+|..++.....+ =..|+-||.....+
T Consensus 46 GGvGKTT~a~nLA~~la~~--G~rVlliD~D~q~~ 78 (298)
T 2oze_A 46 GGVGKSKLSTMFAYLTDKL--NLKVLMIDKDLQAT 78 (298)
T ss_dssp SSSSHHHHHHHHHHHHHHT--TCCEEEEEECTTCH
T ss_pred CCchHHHHHHHHHHHHHhC--CCeEEEEeCCCCCC
Confidence 8999999999999887632 23577788765443
No 327
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=75.89 E-value=1.3 Score=39.81 Aligned_cols=17 Identities=35% Similarity=0.483 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
+.|.||||+|+.++...
T Consensus 12 ~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 12 PMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CTTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998764
No 328
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=75.80 E-value=1.3 Score=41.11 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
+.|+||||+|+.++....
T Consensus 8 ~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 8 TVGAGKSTISAEISKKLG 25 (205)
T ss_dssp CTTSCHHHHHHHHHHHHC
T ss_pred CCccCHHHHHHHHHHhcC
Confidence 479999999999998764
No 329
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=75.72 E-value=1.5 Score=39.91 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=16.5
Q ss_pred CCCCcHHHHHHHHHHHHhh
Q 048566 1 MGGIGKTTLVKKVARQAME 19 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~ 19 (760)
++|.||||+|+.++.....
T Consensus 21 ~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 21 LPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 5799999999999988763
No 330
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=75.66 E-value=1.3 Score=41.16 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
+.|+||||+|+.+....
T Consensus 26 ~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 26 VSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999999875
No 331
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=75.57 E-value=1.6 Score=42.23 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=24.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQI 34 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~ 34 (760)
||+||||+|..++.....+ -..|+-|+....
T Consensus 16 GGvGKTt~a~~LA~~la~~--g~~VlliD~D~~ 46 (257)
T 1wcv_1 16 GGVGKTTTAINLAAYLARL--GKRVLLVDLDPQ 46 (257)
T ss_dssp CCHHHHHHHHHHHHHHHHT--TCCEEEEECCTT
T ss_pred CCchHHHHHHHHHHHHHHC--CCCEEEEECCCC
Confidence 8999999999999887643 235778887654
No 332
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=75.37 E-value=5.1 Score=49.43 Aligned_cols=74 Identities=22% Similarity=0.205 Sum_probs=54.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccc------hhhHHHHHHHHHHHHcCCcEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELRE------EVESSRASRIFERLRNEKKIL 75 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~~~l~~~~r~L 75 (760)
.|.||||||.++...... .=..++|+++.+..+.. .++.+|.+.+. +.-++.+..+.+.++++.--+
T Consensus 1440 ~~sGkttl~~~~~a~~~~--~g~~~~~i~~e~~~~~~-----~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~~ 1512 (1706)
T 3cmw_A 1440 ESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 1512 (1706)
T ss_dssp TTSSHHHHHHHHHHHHHH--TTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred CCCCHHHHHHHHHHHHHh--cCCeEEEEecCCCCCHH-----HHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCCCE
Confidence 589999999999987653 34678999998877765 38888876542 233445555566666677789
Q ss_pred EEEECCC
Q 048566 76 VVLDNIW 82 (760)
Q Consensus 76 lVlDdv~ 82 (760)
||+|-|.
T Consensus 1513 vvvDsv~ 1519 (1706)
T 3cmw_A 1513 IVVDSVA 1519 (1706)
T ss_dssp EEESCST
T ss_pred EEEccHH
Confidence 9999884
No 333
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=75.09 E-value=1.4 Score=42.76 Aligned_cols=27 Identities=33% Similarity=0.498 Sum_probs=19.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEV 31 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~ 31 (760)
||+||||++.+++.... + .. .+.-|+.
T Consensus 23 gGvGKTTl~~~La~~l~-~-g~-~v~vvd~ 49 (262)
T 1yrb_A 23 AGSGKTTLTGEFGRYLE-D-NY-KVAYVNL 49 (262)
T ss_dssp TTSSHHHHHHHHHHHHT-T-TS-CEEEEEC
T ss_pred CCCCHHHHHHHHHHHHH-C-CC-eEEEEeC
Confidence 89999999999998776 3 22 3445554
No 334
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=74.93 E-value=2.7 Score=42.51 Aligned_cols=32 Identities=28% Similarity=0.280 Sum_probs=24.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP 35 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~ 35 (760)
||+||||+|..++.....+ =..+.-|+.....
T Consensus 28 GGvGKTTva~~LA~~lA~~--G~rVllvD~D~~~ 59 (329)
T 2woo_A 28 GGVGKTTTSCSLAIQMSKV--RSSVLLISTDPAH 59 (329)
T ss_dssp SSSSHHHHHHHHHHHHHTS--SSCEEEEECCTTC
T ss_pred CCCcHHHHHHHHHHHHHHC--CCeEEEEECCCCc
Confidence 8999999999999887733 2356777776443
No 335
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=74.89 E-value=1.4 Score=40.13 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
++|+||||+|+.+.....
T Consensus 10 ~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 10 LPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp STTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 479999999999988753
No 336
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=74.80 E-value=2.9 Score=42.54 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=25.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIK 38 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~ 38 (760)
||+||||+|.+++........=..++-|+.....++.
T Consensus 27 GGvGKTt~a~~lA~~la~~~~g~~vllid~D~~~~l~ 63 (348)
T 3io3_A 27 GGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHNLS 63 (348)
T ss_dssp TTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCHHH
T ss_pred CCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCCChH
Confidence 8999999999999887620112357778877554443
No 337
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=74.79 E-value=2.2 Score=43.74 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=27.3
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKR 39 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 39 (760)
||+||||+|..++...... =..|+-||+....+...
T Consensus 11 GGvGKTT~a~nLA~~LA~~--G~rVLlID~D~q~~~~~ 46 (361)
T 3pg5_A 11 GGVGKTTLSTNVAHYFALQ--GKRVLYVDCDPQCNATQ 46 (361)
T ss_dssp CCHHHHHHHHHHHHHHHHT--TCCEEEEECCTTCTTHH
T ss_pred CCCcHHHHHHHHHHHHHhC--CCcEEEEEcCCCCChhh
Confidence 8999999999999887632 24688899876655443
No 338
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=74.76 E-value=1.4 Score=40.19 Aligned_cols=16 Identities=31% Similarity=0.561 Sum_probs=14.3
Q ss_pred CCCCcHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQ 16 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (760)
+.|+||||+|+.+...
T Consensus 18 ~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 18 TPGTGKTSMAEMIAAE 33 (184)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh
Confidence 5799999999999876
No 339
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=74.59 E-value=1.4 Score=39.42 Aligned_cols=18 Identities=33% Similarity=0.379 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
+.|+||||+|+.+.....
T Consensus 10 ~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 10 ARGCGMTTVGRELARALG 27 (173)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999998753
No 340
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=74.52 E-value=1.6 Score=41.20 Aligned_cols=18 Identities=22% Similarity=0.206 Sum_probs=16.1
Q ss_pred CCCcHHHHHHHHHHHHhh
Q 048566 2 GGIGKTTLVKKVARQAME 19 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~ 19 (760)
||+||||+|..++.....
T Consensus 11 gGvGKTt~a~nLa~~la~ 28 (224)
T 1byi_A 11 TEVGKTVASCALLQAAKA 28 (224)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 899999999999988763
No 341
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=74.26 E-value=1.3 Score=40.52 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=13.9
Q ss_pred CCCCcHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQ 16 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (760)
+.|.||||+|+.++..
T Consensus 17 ~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 17 HPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTSCHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHhc
Confidence 4799999999999864
No 342
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=74.12 E-value=1.5 Score=39.91 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
+.|+||||+|+.+.+..
T Consensus 12 ~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 12 PPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998765
No 343
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=74.08 E-value=1.5 Score=39.05 Aligned_cols=18 Identities=22% Similarity=0.169 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
+.|+||||+|+.+.....
T Consensus 8 ~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 8 FMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp CTTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999998653
No 344
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=73.74 E-value=1.6 Score=42.29 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
+.|+||||||++++....
T Consensus 9 ~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 9 PTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp CTTSSHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHhcCC
Confidence 479999999999998753
No 345
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=73.55 E-value=3.1 Score=41.63 Aligned_cols=30 Identities=23% Similarity=0.171 Sum_probs=23.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ 33 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~ 33 (760)
|||||||.|..++.-.... =..|.-||+..
T Consensus 57 GGVGKTTtavNLA~aLA~~--GkkVllID~Dp 86 (314)
T 3fwy_A 57 GGIGKSTTSSNLSAAFSIL--GKRVLQIGCDP 86 (314)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEEESS
T ss_pred CccCHHHHHHHHHHHHHHC--CCeEEEEecCC
Confidence 8999999999998887643 23588888764
No 346
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=73.48 E-value=2.5 Score=47.98 Aligned_cols=62 Identities=23% Similarity=0.368 Sum_probs=38.9
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|.|||.+|+++++..... ++.++. . +++...- .+ .+..+..+++.-+...+..|++|++
T Consensus 520 PGtGKT~lAkaiA~e~~~~-------f~~v~~----~----~l~s~~v----Ge-se~~vr~lF~~Ar~~~P~IifiDEi 579 (806)
T 3cf2_A 520 PGCGKTLLAKAIANECQAN-------FISIKG----P----ELLTMWF----GE-SEANVREIFDKARQAAPCVLFFDEL 579 (806)
T ss_dssp TTSSHHHHHHHHHHTTTCE-------EEECCH----H----HHHTTTC----SS-CHHHHHHHHHHHHTTCSEEEECSCG
T ss_pred CCCCchHHHHHHHHHhCCc-------eEEecc----c----hhhcccc----ch-HHHHHHHHHHHHHHcCCceeechhh
Confidence 7999999999999886421 233331 1 1222211 11 1345666777766568899999999
Q ss_pred CC
Q 048566 82 WK 83 (760)
Q Consensus 82 ~~ 83 (760)
+.
T Consensus 580 Ds 581 (806)
T 3cf2_A 580 DS 581 (806)
T ss_dssp GG
T ss_pred hH
Confidence 64
No 347
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=73.21 E-value=1.6 Score=42.52 Aligned_cols=18 Identities=33% Similarity=0.595 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
++|+||||+|+.+.....
T Consensus 12 ~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 12 LPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 589999999999998754
No 348
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=72.82 E-value=3 Score=44.18 Aligned_cols=78 Identities=17% Similarity=0.315 Sum_probs=41.7
Q ss_pred CCCcHHHHHH-HHHHHHhhhcCCCe-EEEEEecCCC-CHHHHHHHHHHHhCccc------cchh-------hHHHHHHHH
Q 048566 2 GGIGKTTLVK-KVARQAMEDKLFDM-VVFSEVSQIP-DIKRIQQEIAEKLGLEL------REEV-------ESSRASRIF 65 (760)
Q Consensus 2 gGiGKTtLA~-~~~~~~~~~~~F~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~-------~~~~~~~~~ 65 (760)
.|+|||+||. .+++... -+. ++++-+.++. .+.++.+++...=..+. ..++ .....-.+-
T Consensus 172 ~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~~a~tiA 247 (507)
T 1fx0_A 172 RQTGKTAVATDTILNQQG----QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYTGAALA 247 (507)
T ss_dssp SSSSHHHHHHHHHHTCCT----TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHHHHHHHHH
Confidence 5999999965 6666542 453 5777777765 34455555443210100 0000 011122223
Q ss_pred HHHH-cCCcEEEEEECCCC
Q 048566 66 ERLR-NEKKILVVLDNIWK 83 (760)
Q Consensus 66 ~~l~-~~~r~LlVlDdv~~ 83 (760)
++++ +|+.+||++||+..
T Consensus 248 Eyfrd~G~dVLli~Dsltr 266 (507)
T 1fx0_A 248 EYFMYRERHTLIIYDDLSK 266 (507)
T ss_dssp HHHHHTTCEEEEEEECHHH
T ss_pred HHHHHcCCcEEEEEecHHH
Confidence 3332 37999999999753
No 349
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=72.79 E-value=1.7 Score=39.86 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
+.|+||||+|+.+....
T Consensus 11 ~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 11 GPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998764
No 350
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=72.54 E-value=1.7 Score=40.21 Aligned_cols=17 Identities=35% Similarity=0.352 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
++|+||||+|+.+....
T Consensus 28 ~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 28 PPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998875
No 351
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=72.49 E-value=1.1 Score=40.59 Aligned_cols=18 Identities=22% Similarity=0.240 Sum_probs=11.2
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
+.|+||||+|+.+.....
T Consensus 13 ~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 13 PFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CC----CHHHHHHHHHST
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 579999999999987643
No 352
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=72.42 E-value=1.7 Score=40.48 Aligned_cols=19 Identities=16% Similarity=0.169 Sum_probs=16.3
Q ss_pred CCCCcHHHHHHHHHHHHhh
Q 048566 1 MGGIGKTTLVKKVARQAME 19 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~ 19 (760)
+.|+||||+|+.+......
T Consensus 12 ~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 12 IDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 4799999999999988653
No 353
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=72.25 E-value=12 Score=39.11 Aligned_cols=79 Identities=24% Similarity=0.255 Sum_probs=40.5
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCC-HHHHHHHHHHHhCccccc----hhhHHHHHHHHHHHHcCCcEE
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPD-IKRIQQEIAEKLGLELRE----EVESSRASRIFERLRNEKKIL 75 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~~l~~~~r~L 75 (760)
.+|+||||++..++.....+ -..+..++...... ....++...+..+.+.-. .+..+.+....+.+..+.-=+
T Consensus 106 ~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~~~~~Dv 183 (425)
T 2ffh_A 106 LQGSGKTTTAAKLALYYKGK--GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDL 183 (425)
T ss_dssp CTTSSHHHHHHHHHHHHHTT--TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHTTCSE
T ss_pred CCCCCHHHHHHHHHHHHHHc--CCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHHHHCCCCE
Confidence 37999999999999887643 23466776643221 112233444444433211 122233344444443212226
Q ss_pred EEEECC
Q 048566 76 VVLDNI 81 (760)
Q Consensus 76 lVlDdv 81 (760)
+|+|-.
T Consensus 184 VIIDTa 189 (425)
T 2ffh_A 184 ILVDTA 189 (425)
T ss_dssp EEEECC
T ss_pred EEEcCC
Confidence 666754
No 354
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=72.21 E-value=14 Score=39.57 Aligned_cols=29 Identities=24% Similarity=0.170 Sum_probs=21.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVS 32 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~ 32 (760)
+|+||||++.+++.....+ .. .+.-|+..
T Consensus 110 ~GvGKTTl~~kLA~~l~~~-G~-kVllVd~D 138 (504)
T 2j37_W 110 QGSGKTTTCSKLAYYYQRK-GW-KTCLICAD 138 (504)
T ss_dssp TTSSHHHHHHHHHHHHHHT-TC-CEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHhC-CC-eEEEEecc
Confidence 7999999999999887633 22 45566653
No 355
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=72.19 E-value=1.8 Score=39.79 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
+.|+||||+|+.++...
T Consensus 17 ~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 17 GPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998765
No 356
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=72.08 E-value=4.1 Score=41.54 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=26.8
Q ss_pred CCCcHHHHHHHHHHHHh--hhcCCCeEEEEEecCCCCHHH
Q 048566 2 GGIGKTTLVKKVARQAM--EDKLFDMVVFSEVSQIPDIKR 39 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~--~~~~F~~~~wv~~~~~~~~~~ 39 (760)
||+||||+|.+++.... .. =..++-|+.....++..
T Consensus 27 GGvGKTTvaanLA~~lA~~~~--G~rVLLvD~D~~~~l~~ 64 (354)
T 2woj_A 27 GGVGKTTSSCSIAIQMALSQP--NKQFLLISTDPAHNLSD 64 (354)
T ss_dssp TTSSHHHHHHHHHHHHHHHCT--TSCEEEEECCSSCCHHH
T ss_pred CCCcHHHHHHHHHHHHHHhcC--CCeEEEEECCCCCCHHH
Confidence 89999999999998876 33 23577888766566554
No 357
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=72.01 E-value=1.8 Score=40.22 Aligned_cols=17 Identities=47% Similarity=0.663 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
+.|+||||+|+.+....
T Consensus 20 ~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 20 PSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CTTSCHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 47999999999998765
No 358
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=71.93 E-value=1.8 Score=38.93 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
+.|.||||+|+.+....
T Consensus 16 ~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 16 VSGSGKSAVASEVAHQL 32 (175)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 47999999999998764
No 359
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=71.77 E-value=1.8 Score=40.06 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=15.9
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
+.|.||||+|+.++....
T Consensus 33 ~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 33 LSGSGKSTLACALNQMLY 50 (200)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 479999999999998875
No 360
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=71.74 E-value=3.1 Score=44.47 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=27.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQE 43 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~ 43 (760)
.|+|||+|+.++++... -+.++++-+.++. .+.+++++
T Consensus 230 ~g~GKT~l~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~ 268 (578)
T 3gqb_A 230 FGSGKSVTQQSLAKWSN----ADVVVYVGSGERGNEMTDVLVE 268 (578)
T ss_dssp TTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHTT
T ss_pred CCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHH
Confidence 58999999999988743 3678888888764 33444444
No 361
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=71.58 E-value=4.3 Score=46.61 Aligned_cols=62 Identities=19% Similarity=0.307 Sum_probs=34.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+||||||+++++... .. .+.++.+. +......+ .......+.+........++++|++
T Consensus 247 ~GtGKTtLarala~~l~--~~---~i~v~~~~--------------l~~~~~g~-~~~~l~~vf~~a~~~~p~il~iDEi 306 (806)
T 1ypw_A 247 PGTGKTLIARAVANETG--AF---FFLINGPE--------------IMSKLAGE-SESNLRKAFEEAEKNAPAIIFIDEL 306 (806)
T ss_dssp TTSSHHHHHHHHHHTTT--CE---EEEEEHHH--------------HSSSSTTH-HHHHHHHHHHHHHHHCSEEEEEESG
T ss_pred CCCCHHHHHHHHHHHcC--Cc---EEEEEchH--------------hhhhhhhh-HHHHHHHHHHHHHhcCCcEEEeccH
Confidence 69999999999987643 11 23444211 11111111 1223334444443347789999999
Q ss_pred CC
Q 048566 82 WK 83 (760)
Q Consensus 82 ~~ 83 (760)
+.
T Consensus 307 d~ 308 (806)
T 1ypw_A 307 DA 308 (806)
T ss_dssp GG
T ss_pred HH
Confidence 53
No 362
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=71.56 E-value=1.8 Score=39.75 Aligned_cols=18 Identities=28% Similarity=0.220 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
+.|+||||+|+.+.....
T Consensus 20 ~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 20 GPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999998753
No 363
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=71.32 E-value=1.9 Score=40.64 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
+.|+||||+|+.++...
T Consensus 12 ~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 12 PPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 57999999999998865
No 364
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=71.29 E-value=3.7 Score=42.75 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=24.9
Q ss_pred CCCcHHHHHHHHHHHHhhh----cCCCeEEEEEecCCCC
Q 048566 2 GGIGKTTLVKKVARQAMED----KLFDMVVFSEVSQIPD 36 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~----~~F~~~~wv~~~~~~~ 36 (760)
||+||||+|..++...... ..=..|+-||+....+
T Consensus 118 GGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~~ 156 (398)
T 3ez2_A 118 GGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSS 156 (398)
T ss_dssp SSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTCH
T ss_pred CCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCCC
Confidence 8999999999999887531 1123577888865443
No 365
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=70.70 E-value=2 Score=40.74 Aligned_cols=17 Identities=24% Similarity=0.388 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
+.|+||||+|+.++...
T Consensus 15 ~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 15 APGSGKGTVSSRITTHF 31 (227)
T ss_dssp CTTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 47999999999998764
No 366
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=70.44 E-value=6.5 Score=36.68 Aligned_cols=45 Identities=18% Similarity=0.147 Sum_probs=27.2
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAE 46 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 46 (760)
..|+||||+++.++..... .++..+.+..-.....+-+..++++.
T Consensus 11 ~~gsGKsT~~~~l~~~l~~-~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 11 LEGAGKTTARNVVVETLEQ-LGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH-cCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 3699999999999998764 34534444333222233445555554
No 367
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=70.44 E-value=1.9 Score=42.10 Aligned_cols=17 Identities=53% Similarity=0.587 Sum_probs=15.4
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
+|+|||++|+++++...
T Consensus 53 ~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 53 PGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp SCSSHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHhC
Confidence 69999999999999864
No 368
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=70.44 E-value=5.9 Score=36.14 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
..|+||||+|+.+.+...
T Consensus 8 ~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 8 IDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 369999999999998764
No 369
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=70.30 E-value=6.3 Score=37.43 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=21.3
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEE
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSE 30 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~ 30 (760)
..|+||||+|+.+...... .++..+....
T Consensus 35 ~~GsGKsT~~~~l~~~l~~-~~~~~~~~~r 63 (236)
T 3lv8_A 35 LEGAGKSTAIQVVVETLQQ-NGIDHITRTR 63 (236)
T ss_dssp STTSCHHHHHHHHHHHHHH-TTCCCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHh-cCCCeeeeec
Confidence 3699999999999998764 4566444443
No 370
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=69.83 E-value=3.4 Score=38.51 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
+.|.||||+|+.+.....
T Consensus 33 ~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 33 LSASGKSTLAVELEHQLV 50 (211)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 479999999999998765
No 371
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=69.83 E-value=2.1 Score=39.15 Aligned_cols=18 Identities=39% Similarity=0.423 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
+.|+||||+|+.+.+...
T Consensus 8 ~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 8 IDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp STTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 479999999999998764
No 372
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=69.82 E-value=2.2 Score=40.23 Aligned_cols=18 Identities=17% Similarity=0.111 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
+.|+||||+|+.++....
T Consensus 13 ~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 13 APASGKGTQCELIKTKYQ 30 (222)
T ss_dssp STTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999998753
No 373
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=69.60 E-value=2.2 Score=39.91 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
+.|+||||+|+.+....
T Consensus 8 ~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 8 LPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998765
No 374
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=69.42 E-value=2.1 Score=39.14 Aligned_cols=15 Identities=40% Similarity=0.662 Sum_probs=13.2
Q ss_pred CCCCcHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVAR 15 (760)
Q Consensus 1 mgGiGKTtLA~~~~~ 15 (760)
..|.||||+++.+..
T Consensus 10 ~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 10 PAGVGKSTTCKRLAA 24 (189)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHhc
Confidence 369999999999975
No 375
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=69.30 E-value=2.2 Score=38.96 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
+.|+||||+|+.+....
T Consensus 14 ~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 14 GPGSGKGTQCANIVRDF 30 (194)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998764
No 376
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=69.01 E-value=2.2 Score=39.43 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
+.|+||||+|+.+++..
T Consensus 23 ~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 23 GPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 47999999999998763
No 377
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=68.94 E-value=2.4 Score=39.82 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
++|+||||+|+.++...
T Consensus 13 ~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 13 APGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999999999875
No 378
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=68.80 E-value=2.1 Score=43.44 Aligned_cols=17 Identities=41% Similarity=0.589 Sum_probs=15.4
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
+|+||||||+.+++...
T Consensus 60 ~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 60 PGLGKTTLAHIIASELQ 76 (334)
T ss_dssp TTSSHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHhC
Confidence 69999999999999864
No 379
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=68.57 E-value=2.3 Score=39.61 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=18.5
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCe
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDM 25 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~ 25 (760)
+.|+||||+|+.+...... .+++.
T Consensus 18 ~~GsGKST~~~~L~~~l~~-~~~~~ 41 (212)
T 2wwf_A 18 LDRSGKSTQSKLLVEYLKN-NNVEV 41 (212)
T ss_dssp STTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CCCCCHHHHHHHHHHHHHH-cCCcE
Confidence 4699999999999987653 34555
No 380
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=68.46 E-value=1.9 Score=42.54 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
++|+||||+|+++....
T Consensus 41 ~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 41 QPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CTTSCTHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998754
No 381
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=68.38 E-value=2.3 Score=39.79 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=14.4
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
.+|+||||+|+.++...
T Consensus 8 ~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 8 LPGAGKGTQGERIVEKY 24 (216)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998654
No 382
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=68.33 E-value=12 Score=35.14 Aligned_cols=19 Identities=32% Similarity=0.428 Sum_probs=13.4
Q ss_pred CCCCcHHHHHHHHHHHHhh
Q 048566 1 MGGIGKTTLVKKVARQAME 19 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~ 19 (760)
+.|+||||+++.+++....
T Consensus 33 ~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 33 IDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CC---CHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 4699999999999988763
No 383
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=68.28 E-value=2.5 Score=43.35 Aligned_cols=35 Identities=14% Similarity=0.228 Sum_probs=26.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKR 39 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 39 (760)
||+||||+|.+++...... =..++-|+. ...++..
T Consensus 11 GG~GKTt~a~~la~~la~~--g~~vllvd~-~~~~l~~ 45 (374)
T 3igf_A 11 SGVARTKIAIAAAKLLASQ--GKRVLLAGL-AEPVLPL 45 (374)
T ss_dssp BHHHHHHHHHHHHHHHHHT--TCCEEEEEC-SCSHHHH
T ss_pred CCCcHHHHHHHHHHHHHHC--CCCeEEEeC-CCCChHH
Confidence 8999999999999887643 235788888 6555543
No 384
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=68.03 E-value=2.5 Score=39.53 Aligned_cols=17 Identities=18% Similarity=0.073 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
+.|+||||+|+.+....
T Consensus 8 ~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 8 APVAGKGTQAQFIMEKY 24 (214)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998865
No 385
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=67.58 E-value=8.1 Score=38.11 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=26.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIA 45 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 45 (760)
+|+|||||++.++........ ..++|++... +...+.+.+.
T Consensus 44 ~G~GKTTl~~~ia~~~~~~~G-~~v~~~~~e~--~~~~~~~r~~ 84 (296)
T 1cr0_A 44 SGMGKSTFVRQQALQWGTAMG-KKVGLAMLEE--SVEETAEDLI 84 (296)
T ss_dssp TTSSHHHHHHHHHHHHHHTSC-CCEEEEESSS--CHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcC-CeEEEEeCcC--CHHHHHHHHH
Confidence 699999999999988764311 2477776543 3334444443
No 386
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=67.40 E-value=2.4 Score=39.21 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=13.4
Q ss_pred CCCCcHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVAR 15 (760)
Q Consensus 1 mgGiGKTtLA~~~~~ 15 (760)
+.|+||||+|+.+..
T Consensus 9 ~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 9 NIGCGKSTVAQMFRE 23 (204)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHH
Confidence 379999999999986
No 387
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=67.37 E-value=2.5 Score=40.17 Aligned_cols=18 Identities=33% Similarity=0.344 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
+.|+||||+|+.++....
T Consensus 24 ~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 24 PPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999998753
No 388
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=67.35 E-value=3.3 Score=37.02 Aligned_cols=17 Identities=41% Similarity=0.417 Sum_probs=15.3
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
.|.|||||+.++.....
T Consensus 13 sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 13 KHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhH
Confidence 69999999999998876
No 389
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=67.19 E-value=2.5 Score=39.38 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=18.4
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCe
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDM 25 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~ 25 (760)
+.|+||||+|+.+...... .+++.
T Consensus 17 ~~GsGKsT~~~~L~~~l~~-~~~~v 40 (215)
T 1nn5_A 17 VDRAGKSTQSRKLVEALCA-AGHRA 40 (215)
T ss_dssp STTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CCCCCHHHHHHHHHHHHHH-cCCcE
Confidence 4699999999999988653 24454
No 390
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=67.19 E-value=4.6 Score=36.32 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
+.|.||||+|+.+.....
T Consensus 13 ~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 13 LSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 479999999999998764
No 391
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=66.88 E-value=2.6 Score=39.72 Aligned_cols=17 Identities=29% Similarity=0.194 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
+.|+||||+|+.+....
T Consensus 8 ~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 8 PNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998765
No 392
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=66.16 E-value=2.6 Score=38.16 Aligned_cols=18 Identities=50% Similarity=0.709 Sum_probs=15.7
Q ss_pred CCCcHHHHHHHHHHHHhh
Q 048566 2 GGIGKTTLVKKVARQAME 19 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~ 19 (760)
.|+|||||++.++....+
T Consensus 9 nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 9 PGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp TTSSHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHhCC
Confidence 599999999999988653
No 393
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=65.92 E-value=6.6 Score=36.87 Aligned_cols=46 Identities=20% Similarity=0.092 Sum_probs=26.3
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAE 46 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 46 (760)
+.|+||||+|+.+.+.......++.+....-.....+-+.+++++.
T Consensus 29 ~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 29 IDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp STTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHh
Confidence 3699999999999998764133444432222222223344444444
No 394
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=65.45 E-value=2.9 Score=37.88 Aligned_cols=16 Identities=13% Similarity=0.430 Sum_probs=14.3
Q ss_pred CCCcHHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQA 17 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (760)
.|+|||||++.+....
T Consensus 14 sGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 14 HGVGRRHIKNTLITKH 29 (180)
T ss_dssp TTSSHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHhhC
Confidence 6999999999998864
No 395
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=65.15 E-value=37 Score=34.02 Aligned_cols=39 Identities=13% Similarity=-0.054 Sum_probs=25.1
Q ss_pred CCcEEEEEECCCC-c--cccccccccccCCCCCcEEEEeeCC
Q 048566 71 EKKILVVLDNIWK-H--LDLETVGIPFGEDHKGCKLLLTARD 109 (760)
Q Consensus 71 ~~r~LlVlDdv~~-~--~~~~~l~~~~~~~~~gs~IlvTTR~ 109 (760)
+++-++|+|+++. . +.++.+...+....++..+|++|..
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~ 116 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNK 116 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESC
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 4677888899876 3 3456665555544557777766643
No 396
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=65.00 E-value=2.9 Score=38.62 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=14.5
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
+.|+||||+|+.+.+..
T Consensus 12 ~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 12 LDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CTTSSHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 46999999999998764
No 397
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=64.77 E-value=5.5 Score=43.96 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=25.3
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDI 37 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~ 37 (760)
||+||||+|.+++.....+ =..++-|+.....++
T Consensus 17 GGvGKTT~a~~lA~~lA~~--G~rVLlvd~D~~~~l 50 (589)
T 1ihu_A 17 GGVGKTSISCATAIRLAEQ--GKRVLLVSTDPASNV 50 (589)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEECCTTCCH
T ss_pred CcCHHHHHHHHHHHHHHHC--CCcEEEEECCCCcCH
Confidence 8999999999999887643 235777877644443
No 398
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=63.50 E-value=3.1 Score=40.01 Aligned_cols=18 Identities=50% Similarity=0.449 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
+.|.||||+|+.++....
T Consensus 56 ~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 56 MMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp STTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 579999999999998754
No 399
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=63.44 E-value=3.5 Score=39.55 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
..|+||||+|+.++...
T Consensus 35 ~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 35 PPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 37999999999999765
No 400
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=63.26 E-value=3.1 Score=41.40 Aligned_cols=27 Identities=26% Similarity=0.468 Sum_probs=19.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ 33 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~ 33 (760)
+|+|||++|+++++.... ..+.++.+.
T Consensus 59 ~GtGKT~la~~la~~l~~-----~~~~i~~~~ 85 (310)
T 1ofh_A 59 TGVGKTEIARRLAKLANA-----PFIKVEATK 85 (310)
T ss_dssp TTSSHHHHHHHHHHHHTC-----CEEEEEGGG
T ss_pred CCCCHHHHHHHHHHHhCC-----CEEEEcchh
Confidence 699999999999987631 244555543
No 401
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=63.25 E-value=3.4 Score=37.85 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=14.0
Q ss_pred CCCCcHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQ 16 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (760)
+.|.||||+|+.+...
T Consensus 20 ~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 20 KIGTGKSTVCEILKNK 35 (192)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh
Confidence 4699999999999876
No 402
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=62.93 E-value=3.6 Score=39.38 Aligned_cols=17 Identities=24% Similarity=0.263 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
.+|+||||+|+.+.+..
T Consensus 37 ~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 37 APGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998765
No 403
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=62.70 E-value=5.6 Score=38.80 Aligned_cols=31 Identities=16% Similarity=0.117 Sum_probs=24.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQI 34 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~ 34 (760)
||+||||+|..++...... -..|+-|++.-.
T Consensus 92 gG~GKTt~a~nLA~~lA~~--G~rVLLID~D~~ 122 (271)
T 3bfv_A 92 PGAGKSTIAANLAVAYAQA--GYKTLIVDGDMR 122 (271)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEECCSS
T ss_pred CCCcHHHHHHHHHHHHHhC--CCeEEEEeCCCC
Confidence 8999999999999887632 346888887643
No 404
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=62.58 E-value=5.7 Score=37.55 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=16.5
Q ss_pred CCCCcHHHHHHHHHHHHhh
Q 048566 1 MGGIGKTTLVKKVARQAME 19 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~ 19 (760)
..|+||||+|+.+......
T Consensus 34 ~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 34 PEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CTTSCHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 4799999999999998763
No 405
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=62.37 E-value=3.4 Score=38.21 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=14.4
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
..|+||||+|+.+....
T Consensus 14 ~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 14 PSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp STTSCHHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 36999999999998764
No 406
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=62.04 E-value=3.8 Score=38.53 Aligned_cols=17 Identities=41% Similarity=0.487 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
..|.||||+|+.+....
T Consensus 13 ~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 13 PSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 36999999999998764
No 407
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=61.92 E-value=5.7 Score=36.83 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=17.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMV 26 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~ 26 (760)
-|+||||+|+.+++... +.++.+
T Consensus 11 dGsGKsTq~~~L~~~L~--~~~~v~ 33 (205)
T 4hlc_A 11 EGSGKTTVINEVYHRLV--KDYDVI 33 (205)
T ss_dssp TTSCHHHHHHHHHHHHT--TTSCEE
T ss_pred CCCcHHHHHHHHHHHHH--CCCCEE
Confidence 49999999999999875 345443
No 408
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=61.81 E-value=3.4 Score=36.48 Aligned_cols=16 Identities=38% Similarity=0.457 Sum_probs=14.3
Q ss_pred CCCcHHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQA 17 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (760)
-|.|||||++.++.-.
T Consensus 42 nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 42 LGAGKTTLTRGMLQGI 57 (158)
T ss_dssp TTSSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhC
Confidence 4999999999999875
No 409
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=61.74 E-value=9.7 Score=37.37 Aligned_cols=35 Identities=14% Similarity=0.084 Sum_probs=26.3
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCC-CCHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQI-PDIK 38 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~-~~~~ 38 (760)
||+||||+|..++...... =..|+-|++.-. .++.
T Consensus 102 gG~GKTtva~nLA~~lA~~--G~rVLLID~D~~~~~l~ 137 (286)
T 3la6_A 102 PSIGMTFVCANLAAVISQT--NKRVLLIDCDMRKGYTH 137 (286)
T ss_dssp SSSSHHHHHHHHHHHHHTT--TCCEEEEECCTTTCCHH
T ss_pred CCCcHHHHHHHHHHHHHhC--CCCEEEEeccCCCCCHH
Confidence 8999999999999887733 346888887654 3443
No 410
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=61.56 E-value=3.6 Score=37.84 Aligned_cols=16 Identities=25% Similarity=0.202 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQ 16 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (760)
+.|.||||+|+.+...
T Consensus 16 ~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 16 NIGSGKSTVAALLRSW 31 (203)
T ss_dssp CTTSCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHC
Confidence 4699999999999864
No 411
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=61.36 E-value=2.5 Score=40.86 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
++|.||||+|+.+....
T Consensus 40 ~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 40 QSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CGGGTTHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 47999999999998764
No 412
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=61.25 E-value=6.5 Score=39.35 Aligned_cols=30 Identities=30% Similarity=0.241 Sum_probs=22.3
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ 33 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~ 33 (760)
+|+||||++..++...... -..+.+++...
T Consensus 114 ~G~GKTT~~~~LA~~l~~~--g~kVllid~D~ 143 (320)
T 1zu4_A 114 NGTGKTTSLAKMANYYAEL--GYKVLIAAADT 143 (320)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEECCC
T ss_pred CCCCHHHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence 7999999999999887643 23467776543
No 413
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=61.01 E-value=3.6 Score=37.98 Aligned_cols=16 Identities=38% Similarity=0.686 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQA 17 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (760)
.|+|||||++.+....
T Consensus 16 ~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 16 SGAGKTSLVRALVKAL 31 (205)
T ss_dssp TTSCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhhC
Confidence 5999999999998763
No 414
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=60.93 E-value=3.5 Score=38.16 Aligned_cols=15 Identities=33% Similarity=0.304 Sum_probs=13.1
Q ss_pred CCCCcHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVAR 15 (760)
Q Consensus 1 mgGiGKTtLA~~~~~ 15 (760)
+.|.||||+|+.+..
T Consensus 10 ~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 10 GIGSGKTTIANLFTD 24 (206)
T ss_dssp STTSCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHH
Confidence 369999999999975
No 415
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=60.86 E-value=9.6 Score=37.97 Aligned_cols=18 Identities=39% Similarity=0.527 Sum_probs=16.4
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
+||.|||-++.++++..+
T Consensus 46 vGGTGKTP~vi~L~~~L~ 63 (315)
T 4ehx_A 46 VGGSGKTSFVMYLADLLK 63 (315)
T ss_dssp SSCCSHHHHHHHHHHHTT
T ss_pred eCCCChHHHHHHHHHHHh
Confidence 599999999999999875
No 416
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=60.81 E-value=12 Score=34.72 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=19.0
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeE
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMV 26 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~ 26 (760)
..|+||||+|+.+.+.... ..+..+
T Consensus 14 ~~gsGKsT~~~~l~~~l~~-~~~~v~ 38 (213)
T 4edh_A 14 PEGAGKSTNRDYLAERLRE-RGIEVQ 38 (213)
T ss_dssp STTSSHHHHHHHHHHHHHT-TTCCEE
T ss_pred CCCCCHHHHHHHHHHHHHH-cCCCcc
Confidence 3699999999999988763 345543
No 417
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=60.79 E-value=2.8 Score=37.61 Aligned_cols=13 Identities=46% Similarity=0.595 Sum_probs=11.1
Q ss_pred CCCcHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVA 14 (760)
Q Consensus 2 gGiGKTtLA~~~~ 14 (760)
.|.|||||++.++
T Consensus 18 nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 18 SGSGKSTFAKKHF 30 (171)
T ss_dssp TTSCHHHHHHHHS
T ss_pred CCCCHHHHHHHHc
Confidence 6999999999744
No 418
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=60.74 E-value=16 Score=36.53 Aligned_cols=32 Identities=13% Similarity=-0.037 Sum_probs=20.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ 33 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~ 33 (760)
.|+||||+|+.+..-......-..+..+....
T Consensus 101 sGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 101 VAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp TTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred CCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 59999999999987654210012355565543
No 419
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=60.71 E-value=3.1 Score=38.71 Aligned_cols=29 Identities=21% Similarity=0.155 Sum_probs=20.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVS 32 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~ 32 (760)
.|.|||||++.+.......+ ..+.+|...
T Consensus 31 sGsGKSTl~~~l~~~~~~~g--~~~g~v~~d 59 (208)
T 3c8u_A 31 PGSGKSTLSNPLAAALSAQG--LPAEVVPMD 59 (208)
T ss_dssp TTSCTHHHHHHHHHHHHHTT--CCEEEEESG
T ss_pred CCCCHHHHHHHHHHHHhhcC--CceEEEecC
Confidence 69999999999998765321 124556554
No 420
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=60.69 E-value=3.8 Score=38.50 Aligned_cols=17 Identities=35% Similarity=0.425 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
+|+|||||+.++.....
T Consensus 47 ~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 47 IGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TTSSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 79999999999998764
No 421
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=60.63 E-value=3.9 Score=40.59 Aligned_cols=16 Identities=25% Similarity=0.410 Sum_probs=14.1
Q ss_pred CCCCcHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQ 16 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (760)
++|.||||+|+.+...
T Consensus 10 ~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 10 CPGSGKSTWAREFIAK 25 (301)
T ss_dssp CTTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh
Confidence 4799999999999874
No 422
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=60.54 E-value=7.5 Score=38.01 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=21.6
Q ss_pred CCCcHHHHHHHHHHHHhhhc--------CCCeEEEEEecC
Q 048566 2 GGIGKTTLVKKVARQAMEDK--------LFDMVVFSEVSQ 33 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~--------~F~~~~wv~~~~ 33 (760)
+|+||||||..++....... .-..++++++..
T Consensus 39 ~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 39 GGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp TTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred CCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC
Confidence 69999999999998654210 013467777654
No 423
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=59.92 E-value=3.2 Score=38.29 Aligned_cols=17 Identities=12% Similarity=0.053 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
+|.||||+|.++++...
T Consensus 67 PGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 67 ANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp GGGCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 79999999999998864
No 424
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=59.36 E-value=8.9 Score=37.94 Aligned_cols=34 Identities=18% Similarity=0.091 Sum_probs=25.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC-CCCH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ-IPDI 37 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~-~~~~ 37 (760)
||+||||+|..++...... -..|+-|++.- ..++
T Consensus 114 gG~GKTtva~nLA~~lA~~--G~rVLLID~D~r~~~l 148 (299)
T 3cio_A 114 PDSGKTFVSSTLAAVIAQS--DQKVLFIDADLRRGYS 148 (299)
T ss_dssp SSSCHHHHHHHHHHHHHHT--TCCEEEEECCTTTCCH
T ss_pred CCCChHHHHHHHHHHHHhC--CCcEEEEECCCCCccH
Confidence 8999999999999887633 24588888765 3444
No 425
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=59.31 E-value=4 Score=37.94 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=14.6
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
.|+|||||++.+.....
T Consensus 17 sGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 17 SGVGKGTVREAVFKDPE 33 (208)
T ss_dssp TTSCHHHHHHHHHHSTT
T ss_pred CCCCHHHHHHHHHhhCC
Confidence 69999999999987643
No 426
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=59.15 E-value=4.4 Score=36.87 Aligned_cols=17 Identities=41% Similarity=0.557 Sum_probs=14.6
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
.|+|||||++++..+..
T Consensus 10 SG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 10 SGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp TTSSHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHhCC
Confidence 69999999999987643
No 427
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=58.94 E-value=14 Score=34.99 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQA 17 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (760)
.|.|||.+|..++...
T Consensus 117 tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 117 TGSGKTHVAMAAINEL 132 (237)
T ss_dssp SSTTHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHc
Confidence 5999999999888764
No 428
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=58.74 E-value=4.7 Score=40.76 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=15.9
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
++|+||||+|+.++....
T Consensus 32 ~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 32 SPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhC
Confidence 589999999999998765
No 429
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=58.59 E-value=4.1 Score=37.76 Aligned_cols=15 Identities=40% Similarity=0.576 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQ 16 (760)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (760)
.|.||||+|+.+...
T Consensus 30 ~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 30 TNSGKTTLAKNLQKH 44 (207)
T ss_dssp TTSSHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHh
Confidence 699999999998754
No 430
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=57.91 E-value=4.4 Score=37.40 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
.|.||||+|+.+.....
T Consensus 31 ~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 31 SRSGKTTLANQLSQTLR 47 (201)
T ss_dssp TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 69999999999998764
No 431
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=57.80 E-value=4.4 Score=36.84 Aligned_cols=17 Identities=41% Similarity=0.557 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
.|+|||||++.+.....
T Consensus 10 sGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 10 SGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp SSSSHHHHHHHHHHHCG
T ss_pred CCCCHHHHHHHHHhhCC
Confidence 59999999999998764
No 432
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=57.78 E-value=4.4 Score=37.64 Aligned_cols=17 Identities=41% Similarity=0.429 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
.|.|||||++.+.....
T Consensus 15 ~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 15 TASGKTTLAQALARTLG 31 (211)
T ss_dssp TTSSHHHHHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 59999999999998754
No 433
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=57.72 E-value=4.4 Score=41.55 Aligned_cols=16 Identities=44% Similarity=0.547 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQA 17 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (760)
+|+|||++|+++++..
T Consensus 60 pGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 60 TGSGKTLLAETLARLL 75 (363)
T ss_dssp TTSSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHc
Confidence 7999999999999876
No 434
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=57.72 E-value=4.7 Score=38.79 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
..|.||||+|+.+.....
T Consensus 30 ~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 30 GTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp STTSSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 379999999999988643
No 435
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=57.66 E-value=4.4 Score=41.79 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=14.6
Q ss_pred CCCcHHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQA 17 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (760)
+|+|||++|+++++..
T Consensus 81 ~GtGKT~la~~la~~l 96 (376)
T 1um8_A 81 TGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TTSSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHh
Confidence 6999999999999876
No 436
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=57.47 E-value=3.5 Score=38.35 Aligned_cols=17 Identities=41% Similarity=0.540 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
.|+||||+|+.+.....
T Consensus 9 ~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 9 DGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 59999999999998865
No 437
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=57.44 E-value=5.1 Score=41.77 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=16.5
Q ss_pred CCCcHHHHHHHHHHHHhhh----cCCCeEEEEEecCC
Q 048566 2 GGIGKTTLVKKVARQAMED----KLFDMVVFSEVSQI 34 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~----~~F~~~~wv~~~~~ 34 (760)
||+||||+|..++...... ..=..|+-||+...
T Consensus 121 GGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~ 157 (403)
T 3ez9_A 121 GGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQ 157 (403)
T ss_dssp -------CHHHHHHHHHSCGGGGGGCCCEEEEEESSS
T ss_pred CCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence 8999999999999887521 11235778887543
No 438
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=57.20 E-value=4.7 Score=37.66 Aligned_cols=15 Identities=33% Similarity=0.337 Sum_probs=13.1
Q ss_pred CCCCcHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVAR 15 (760)
Q Consensus 1 mgGiGKTtLA~~~~~ 15 (760)
+.|.||||+|+.+..
T Consensus 12 ~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 12 GIGSGKSTVANAFAD 26 (218)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999975
No 439
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=57.18 E-value=14 Score=36.81 Aligned_cols=31 Identities=13% Similarity=0.052 Sum_probs=20.5
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVS 32 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~ 32 (760)
.|.||||||+.+..-......-..+.+|...
T Consensus 99 sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd 129 (312)
T 3aez_A 99 VAVGKSTTARVLQALLARWDHHPRVDLVTTD 129 (312)
T ss_dssp TTSCHHHHHHHHHHHHHTSTTCCCEEEEEGG
T ss_pred CCchHHHHHHHHHhhccccCCCCeEEEEecC
Confidence 5999999999999876532111235566543
No 440
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=57.11 E-value=5 Score=37.04 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
..|.||||+|+.+.....
T Consensus 10 ~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 10 PSASGKSSVARRVAAALG 27 (208)
T ss_dssp STTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 369999999999987653
No 441
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=56.91 E-value=6.1 Score=35.46 Aligned_cols=17 Identities=47% Similarity=0.612 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
.|+|||||+..+.....
T Consensus 15 sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 15 SGTGKTTLLKKLIPALC 31 (174)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcc
Confidence 69999999999998765
No 442
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=56.84 E-value=5.3 Score=37.08 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
+|+||||.|+.++....
T Consensus 9 PGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 9 PGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp TTSSHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHC
Confidence 79999999999997753
No 443
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=56.30 E-value=17 Score=39.36 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=19.5
Q ss_pred CCCcHHHHHHHHH-HHHhhhcCCCeEEEEEecC
Q 048566 2 GGIGKTTLVKKVA-RQAMEDKLFDMVVFSEVSQ 33 (760)
Q Consensus 2 gGiGKTtLA~~~~-~~~~~~~~F~~~~wv~~~~ 33 (760)
.|.|||||++.+. .-... .-.+.++++..+
T Consensus 48 nGsGKSTL~~~~ll~Gl~~--~~~g~i~v~g~~ 78 (525)
T 1tf7_A 48 SGTGKTLFSIQFLYNGIIE--FDEPGVFVTFEE 78 (525)
T ss_dssp TTSSHHHHHHHHHHHHHHH--HCCCEEEEESSS
T ss_pred CCCCHHHHHHHHHHHHHHh--CCCCEEEEEEeC
Confidence 6999999999953 32221 124677887544
No 444
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=56.20 E-value=5.3 Score=38.47 Aligned_cols=17 Identities=41% Similarity=0.499 Sum_probs=14.5
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
+.|.||||+|+.++...
T Consensus 35 ~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 35 PSGAGKGTLCKALAESL 51 (252)
T ss_dssp CTTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 46999999999999664
No 445
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=56.15 E-value=5.7 Score=37.60 Aligned_cols=17 Identities=29% Similarity=0.526 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
.+|.||||+|+.+....
T Consensus 17 ~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 17 PAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 37999999999998775
No 446
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=55.73 E-value=4.3 Score=36.35 Aligned_cols=29 Identities=31% Similarity=0.251 Sum_probs=19.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSE 30 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~ 30 (760)
.|.|||||++.+..-....+.-.+.+.++
T Consensus 11 SGsGKSTL~~~L~~~~~~~g~~~G~I~~d 39 (171)
T 2f1r_A 11 SDSGKTTLITRMMPILRERGLRVAVVKRH 39 (171)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEEC-
T ss_pred CCCCHHHHHHHHHHHhhhcCCceEEEEEc
Confidence 58999999999998876432223455554
No 447
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=55.29 E-value=6 Score=36.09 Aligned_cols=17 Identities=41% Similarity=0.614 Sum_probs=15.3
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
.|+|||||++.++....
T Consensus 10 nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 10 PGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CSSCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHhhcc
Confidence 59999999999998875
No 448
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=55.26 E-value=5.2 Score=34.89 Aligned_cols=16 Identities=31% Similarity=0.708 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQA 17 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (760)
+|+|||||+.++....
T Consensus 12 ~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 12 GGVGKSALTIQLIQNH 27 (166)
T ss_dssp TTSSHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHhCc
Confidence 7999999999998653
No 449
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=55.22 E-value=5.4 Score=37.27 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
+|+|||||+.++.....
T Consensus 39 ~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 39 IGSGKTLLIERTIERIG 55 (221)
T ss_dssp TTSCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 79999999999998764
No 450
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=55.21 E-value=5.6 Score=37.91 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
+.|+||||+|+.+++..
T Consensus 10 ~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 10 NIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CTTSSHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 36999999999999875
No 451
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=54.55 E-value=6.4 Score=37.12 Aligned_cols=18 Identities=22% Similarity=0.178 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
++|+||||+|+.+.....
T Consensus 16 ~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 16 APGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CTTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999998763
No 452
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=54.47 E-value=5.8 Score=39.59 Aligned_cols=17 Identities=29% Similarity=0.262 Sum_probs=14.5
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
..|+||||||+.++...
T Consensus 13 ptGsGKTtla~~La~~l 29 (323)
T 3crm_A 13 PTAAGKTDLAMALADAL 29 (323)
T ss_dssp CTTSCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 36999999999999763
No 453
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=54.47 E-value=7 Score=35.46 Aligned_cols=37 Identities=16% Similarity=0.073 Sum_probs=22.0
Q ss_pred CcEEEEEECCCCc-cccccccccccCCCCCcEEEEeeCCH
Q 048566 72 KKILVVLDNIWKH-LDLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 72 ~r~LlVlDdv~~~-~~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+.-+|++|.+... .+|......+.+. |..|++|.+..
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~--~~~Vi~~Gl~~ 113 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDR--GIDVFCAGLDL 113 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHT--TCEEEEEEESB
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHC--CCCEEEEeecc
Confidence 5569999998764 2333322222222 67799888854
No 454
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=54.26 E-value=5.9 Score=36.36 Aligned_cols=16 Identities=19% Similarity=0.520 Sum_probs=14.2
Q ss_pred CCCcHHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQA 17 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (760)
.|+|||||++.+....
T Consensus 28 SGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 28 SGVGRSHIKNALLSQN 43 (197)
T ss_dssp TTSSHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHhhC
Confidence 6999999999999764
No 455
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=54.16 E-value=6.6 Score=39.00 Aligned_cols=18 Identities=39% Similarity=0.602 Sum_probs=15.9
Q ss_pred CCCcHHHHHHHHHHHHhh
Q 048566 2 GGIGKTTLVKKVARQAME 19 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~ 19 (760)
+|+||||+++.++.....
T Consensus 111 nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 111 NGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp TTSSHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHh
Confidence 699999999999988764
No 456
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=53.86 E-value=4.3 Score=40.92 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=14.9
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
+|+|||++|+++++...
T Consensus 55 pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 55 PGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp CCHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHhC
Confidence 69999999999998653
No 457
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=53.85 E-value=5.8 Score=42.48 Aligned_cols=18 Identities=6% Similarity=0.014 Sum_probs=16.3
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
+.|.||||+|++++....
T Consensus 403 lsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 403 SLTVSREQLSIALLSTFL 420 (511)
T ss_dssp TCCSCHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHH
Confidence 579999999999999975
No 458
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=53.82 E-value=25 Score=35.19 Aligned_cols=48 Identities=25% Similarity=0.282 Sum_probs=29.9
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC-CCCHHHHHHHHHHHhCcc
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ-IPDIKRIQQEIAEKLGLE 51 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~ 51 (760)
.|+||||+++.++......+ ..+.++.... .....+.++...+.++.+
T Consensus 138 nGaGKTTll~~Lag~l~~~~--g~V~l~g~D~~r~~a~eql~~~~~~~gv~ 186 (328)
T 3e70_C 138 NGSGKTTTIAKLANWLKNHG--FSVVIAASDTFRAGAIEQLEEHAKRIGVK 186 (328)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--CCEEEEEECCSSTTHHHHHHHHHHHTTCE
T ss_pred CCCCHHHHHHHHHHHHHhcC--CEEEEEeecccccchHHHHHHHHHHcCce
Confidence 69999999999998776431 2355555432 223444555566666643
No 459
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=53.82 E-value=6.2 Score=38.88 Aligned_cols=44 Identities=14% Similarity=0.111 Sum_probs=25.3
Q ss_pred CCCcHHHHHHHHHHHHhhhc-CCCeEEEEEecCCCCHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDK-LFDMVVFSEVSQIPDIKRIQQEIA 45 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~-~F~~~~wv~~~~~~~~~~~~~~i~ 45 (760)
.|+||||||+.+.......+ ....+..|+...-.-.......+.
T Consensus 40 sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~ 84 (290)
T 1odf_A 40 QGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLN 84 (290)
T ss_dssp TTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHh
Confidence 69999999999988765421 123444545544322233334443
No 460
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=53.72 E-value=5.6 Score=36.84 Aligned_cols=16 Identities=25% Similarity=0.526 Sum_probs=14.2
Q ss_pred CCCcHHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQA 17 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (760)
.|+|||||++.+..-.
T Consensus 29 nGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 29 SAVGKSTVVRCLRERI 44 (207)
T ss_dssp TTSSHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhhC
Confidence 5999999999998765
No 461
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=53.62 E-value=5.7 Score=36.53 Aligned_cols=17 Identities=41% Similarity=0.642 Sum_probs=14.6
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
.|+|||||++.+.....
T Consensus 13 sGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 13 SGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp TTSSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhhCc
Confidence 59999999999987653
No 462
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=53.22 E-value=5.7 Score=38.00 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQA 17 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (760)
.|.||||||+.+....
T Consensus 34 ~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 34 TASGKSTVCEKIMELL 49 (245)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 5999999999998864
No 463
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=52.76 E-value=6.7 Score=36.69 Aligned_cols=18 Identities=28% Similarity=0.279 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
.+|+||||.|+.++....
T Consensus 37 pPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 37 GPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CTTCCHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHC
Confidence 379999999999998753
No 464
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=52.66 E-value=6 Score=35.99 Aligned_cols=16 Identities=31% Similarity=0.763 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQA 17 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (760)
.|+|||||.+.+....
T Consensus 38 ~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 38 SGVGKSNLLSRFTRNE 53 (191)
T ss_dssp TTSSHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhcCC
Confidence 6999999999998754
No 465
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=52.64 E-value=5.8 Score=38.92 Aligned_cols=14 Identities=21% Similarity=0.667 Sum_probs=12.8
Q ss_pred CCCCcHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVA 14 (760)
Q Consensus 1 mgGiGKTtLA~~~~ 14 (760)
+.|+||||+|+.+.
T Consensus 83 ~~GSGKSTva~~La 96 (281)
T 2f6r_A 83 ISGSGKSSVAQRLK 96 (281)
T ss_dssp CTTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 47999999999998
No 466
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=52.58 E-value=6.2 Score=34.34 Aligned_cols=15 Identities=20% Similarity=0.603 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQ 16 (760)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (760)
+|+|||||+.++.+.
T Consensus 10 ~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 10 PNVGKSSLFNRLLKK 24 (161)
T ss_dssp TTSSHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHhCC
Confidence 699999999999865
No 467
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=51.63 E-value=7.7 Score=38.46 Aligned_cols=18 Identities=39% Similarity=0.440 Sum_probs=15.8
Q ss_pred CCCcHHHHHHHHHHHHhh
Q 048566 2 GGIGKTTLVKKVARQAME 19 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~ 19 (760)
.|+||||+++.++.....
T Consensus 109 nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 109 NGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 699999999999988764
No 468
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=51.48 E-value=6.4 Score=36.86 Aligned_cols=16 Identities=44% Similarity=0.731 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQA 17 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (760)
.|+|||||++.+....
T Consensus 32 sGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 32 SGVGKGTLIKKLLNEF 47 (218)
T ss_dssp TTSSHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhhC
Confidence 5999999999998754
No 469
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=51.42 E-value=6.5 Score=35.53 Aligned_cols=16 Identities=31% Similarity=0.708 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQA 17 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (760)
+|+|||||+.++....
T Consensus 30 ~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 30 GGVGKSALTIQLIQNH 45 (190)
T ss_dssp TTSSHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHcCC
Confidence 7999999999998653
No 470
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=51.07 E-value=9.4 Score=35.86 Aligned_cols=94 Identities=11% Similarity=0.045 Sum_probs=44.3
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCeEEEEEe-cCCCCHHHHHHHHHHHhCccccc---hhhHHHHHHHHHHHHcCCcEEEEE
Q 048566 3 GIGKTTLVKKVARQAMEDKLFDMVVFSEV-SQIPDIKRIQQEIAEKLGLELRE---EVESSRASRIFERLRNEKKILVVL 78 (760)
Q Consensus 3 GiGKTtLA~~~~~~~~~~~~F~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~~l~~~~r~LlVl 78 (760)
|.||||-|....++... ......++-.. ..++. . .+...++..... ....+ +.+.. ++--+|++
T Consensus 29 gsGKTT~lL~~~~r~~~-~g~kvli~kp~~D~Ryg-~----~i~sr~G~~~~a~~i~~~~d----i~~~~--~~~dvViI 96 (234)
T 2orv_A 29 FSGKSTELMRRVRRFQI-AQYKCLVIKYAKDTRYS-S----SFCTHDRNTMEALPACLLRD----VAQEA--LGVAVIGI 96 (234)
T ss_dssp TSCHHHHHHHHHHHHHT-TTCCEEEEEETTCCCC----------------CEEEEESSGGG----GHHHH--TTCSEEEE
T ss_pred CCcHHHHHHHHHHHHHH-CCCeEEEEeecCCccch-H----HHHhhcCCeeEEEecCCHHH----HHHHh--ccCCEEEE
Confidence 79999988877777653 23444443322 22223 2 345544443221 11111 22233 23348999
Q ss_pred ECCCCccccccccccccCCCCCcEEEEeeCCH
Q 048566 79 DNIWKHLDLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 79 Ddv~~~~~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
|.+.-.....++...+.+ .|-.||+|-++.
T Consensus 97 DEaQF~~~v~el~~~l~~--~gi~VI~~GL~~ 126 (234)
T 2orv_A 97 DEGQFFPDIVEFCEAMAN--AGKTVIVAALDG 126 (234)
T ss_dssp SSGGGCTTHHHHHHHHHH--TTCEEEEECCSB
T ss_pred EchhhhhhHHHHHHHHHh--CCCEEEEEeccc
Confidence 987544333333333322 467899999975
No 471
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=50.86 E-value=6.6 Score=35.91 Aligned_cols=15 Identities=33% Similarity=0.813 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQ 16 (760)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (760)
.|+|||||.+.+...
T Consensus 14 ~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 14 SGVGKSNLLSRFTRN 28 (199)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999875
No 472
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=49.43 E-value=7.3 Score=41.50 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=16.0
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
++|.||||+|++++....
T Consensus 47 lpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 47 LPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 579999999999998765
No 473
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=49.43 E-value=7.5 Score=40.72 Aligned_cols=18 Identities=33% Similarity=0.597 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
.+|+||||+|++++....
T Consensus 58 ppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 58 PTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp CTTSSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 379999999999998764
No 474
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=49.35 E-value=7.4 Score=34.07 Aligned_cols=15 Identities=20% Similarity=0.760 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQ 16 (760)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (760)
+|+|||||+.++.+.
T Consensus 14 ~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 14 GAVGKSSMIQRYCKG 28 (168)
T ss_dssp TTSSHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999999865
No 475
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=49.28 E-value=7.4 Score=42.01 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=16.0
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
++|.||||+|++++....
T Consensus 43 lpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 43 LPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 589999999999998765
No 476
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=49.02 E-value=5.1 Score=41.94 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=14.5
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
++|.||||+|++++.+.
T Consensus 266 ~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 266 FPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CTTSSHHHHHHHHTGGG
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 57999999999988654
No 477
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=48.82 E-value=7.7 Score=39.01 Aligned_cols=16 Identities=38% Similarity=0.410 Sum_probs=14.2
Q ss_pred CCCcHHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQA 17 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (760)
.|+||||||+.++...
T Consensus 16 tgSGKTtla~~La~~l 31 (340)
T 3d3q_A 16 TASGKTELSIEVAKKF 31 (340)
T ss_dssp TTSSHHHHHHHHHHHT
T ss_pred CcCcHHHHHHHHHHHc
Confidence 6999999999999764
No 478
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=48.78 E-value=6 Score=35.65 Aligned_cols=15 Identities=40% Similarity=0.691 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQ 16 (760)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (760)
+|+|||||++.+...
T Consensus 11 ~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 11 TGSGKTTLLQQLMKT 25 (184)
T ss_dssp TTSSHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999998863
No 479
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=48.46 E-value=7.4 Score=34.27 Aligned_cols=15 Identities=20% Similarity=0.492 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQ 16 (760)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (760)
+|+|||||...+...
T Consensus 12 ~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 12 PNVGKSTIFNALTGE 26 (165)
T ss_dssp TTSSHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHhCC
Confidence 699999999999753
No 480
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=48.41 E-value=4.3 Score=41.19 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=14.9
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
+|+|||++|+++++...
T Consensus 54 ~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 54 RGTGKSTAVRALAALLP 70 (350)
T ss_dssp GGGCTTHHHHHHHHHSC
T ss_pred CCccHHHHHHHHHHhCc
Confidence 59999999999998753
No 481
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=48.03 E-value=7.9 Score=36.29 Aligned_cols=17 Identities=24% Similarity=0.548 Sum_probs=14.7
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
.|+|||||++.+.....
T Consensus 25 sGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 25 SGAGKSSLIQALLKTQP 41 (219)
T ss_dssp TTSCHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhccCC
Confidence 59999999999998754
No 482
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=47.84 E-value=6.2 Score=41.41 Aligned_cols=29 Identities=28% Similarity=0.184 Sum_probs=21.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVS 32 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~ 32 (760)
+|+||||+|.+++.....+ . ..+..++..
T Consensus 108 ~GvGKTTla~~La~~l~~~-G-~kVllv~~D 136 (432)
T 2v3c_C 108 QGSGKTTTAAKLARYIQKR-G-LKPALIAAD 136 (432)
T ss_dssp SSSSTTHHHHHHHHHHHHH-H-CCEEEECCS
T ss_pred CCCCHHHHHHHHHHHHHHc-C-CeEEEEecc
Confidence 7999999999999887633 2 245666654
No 483
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=47.75 E-value=27 Score=45.52 Aligned_cols=73 Identities=18% Similarity=0.168 Sum_probs=41.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|.|||++|+++..... .+ ..+.++.+...+...+++.+-..+......... +..--..+++.++.+||+
T Consensus 1276 pGtGKT~la~~~l~~~~---~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~------~~~P~~~gk~~VlFiDEi 1345 (2695)
T 4akg_A 1276 PGSGKTMIMNNALRNSS---LY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGL------TLLPKSDIKNLVLFCDEI 1345 (2695)
T ss_dssp TTSSHHHHHHHHHHSCS---SC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTE------EEEEBSSSSCEEEEEETT
T ss_pred CCCCHHHHHHHHHhcCC---CC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCc------cccCCCCCceEEEEeccc
Confidence 69999999988775431 12 356678777777766666555544321100000 000000258889999996
Q ss_pred CCc
Q 048566 82 WKH 84 (760)
Q Consensus 82 ~~~ 84 (760)
+-+
T Consensus 1346 nmp 1348 (2695)
T 4akg_A 1346 NLP 1348 (2695)
T ss_dssp TCS
T ss_pred ccc
Confidence 543
No 484
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=47.08 E-value=9 Score=33.40 Aligned_cols=16 Identities=31% Similarity=0.387 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQA 17 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (760)
+|+|||||..++.+..
T Consensus 9 ~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 9 DAAGKTTILYKLKLGE 24 (164)
T ss_dssp TTSSHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHcCC
Confidence 6999999999998754
No 485
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=47.08 E-value=15 Score=35.51 Aligned_cols=105 Identities=15% Similarity=0.126 Sum_probs=50.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC-CCCHHHHHHHHHH--HhCccccchhhHHHHHHHHHHHHcCCcEEEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ-IPDIKRIQQEIAE--KLGLELREEVESSRASRIFERLRNEKKILVVL 78 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVl 78 (760)
.|.||||+++.+....... +.+.+++.-.. .+-.... ..+.. .++. + .......+...+.. ++=+|++
T Consensus 34 ~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl----~-~~~l~~~la~aL~~-~p~illl 104 (261)
T 2eyu_A 34 TGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHK-KSIVNQREVGE----D-TKSFADALRAALRE-DPDVIFV 104 (261)
T ss_dssp TTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCS-SSEEEEEEBTT----T-BSCHHHHHHHHHHH-CCSEEEE
T ss_pred CCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceeecCCc-ceeeeHHHhCC----C-HHHHHHHHHHHHhh-CCCEEEe
Confidence 5999999999999876532 23444332111 0000000 00000 0000 0 01123445555665 5567888
Q ss_pred ECCCCccccccccccccCCCCCcEEEEeeCCHHHHHHHHHH
Q 048566 79 DNIWKHLDLETVGIPFGEDHKGCKLLLTARDRKEAWRLFKM 119 (760)
Q Consensus 79 Ddv~~~~~~~~l~~~~~~~~~gs~IlvTTR~~~~a~~Lf~~ 119 (760)
|...+.+....+... ...|.-|++||-+.+ +.....+
T Consensus 105 DEp~D~~~~~~~l~~---~~~g~~vl~t~H~~~-~~~~~dr 141 (261)
T 2eyu_A 105 GEMRDLETVETALRA---AETGHLVFGTLHTNT-AIDTIHR 141 (261)
T ss_dssp SCCCSHHHHHHHHHH---HHTTCEEEEEECCSS-HHHHHHH
T ss_pred CCCCCHHHHHHHHHH---HccCCEEEEEeCcch-HHHHHHH
Confidence 998765443332222 123555888887643 4444433
No 486
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=46.50 E-value=8.7 Score=33.51 Aligned_cols=16 Identities=31% Similarity=0.628 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQA 17 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (760)
+|+|||||..++.+..
T Consensus 13 ~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 13 GGVGKSALTLQFMYDE 28 (168)
T ss_dssp TTSSHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHhCc
Confidence 6999999999998754
No 487
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=46.38 E-value=5.4 Score=42.70 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=14.9
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
+|+|||+||+++++...
T Consensus 50 PGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 50 PGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp SSSSHHHHHHHGGGGBS
T ss_pred chHHHHHHHHHHHHHHh
Confidence 79999999999998653
No 488
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=46.09 E-value=9.4 Score=36.16 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=14.5
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
+.|.||||+|+.+....
T Consensus 24 ~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 24 PASSGKSTVAKIIAKDF 40 (236)
T ss_dssp SSCSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 46999999999998764
No 489
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=46.00 E-value=25 Score=38.00 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=20.3
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVS 32 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~ 32 (760)
.|+|||||++.++...... =..++++...
T Consensus 290 ~GsGKSTLl~~l~g~~~~~--G~~vi~~~~e 318 (525)
T 1tf7_A 290 TGTGKTLLVSRFVENACAN--KERAILFAYE 318 (525)
T ss_dssp TTSSHHHHHHHHHHHHHTT--TCCEEEEESS
T ss_pred CCCCHHHHHHHHHHHHHhC--CCCEEEEEEe
Confidence 6999999999999876532 1235566543
No 490
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=45.88 E-value=15 Score=38.90 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=20.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSE 30 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~ 30 (760)
+|.||||++.++.......+. ..++.+.
T Consensus 54 aGTGKT~ll~~~~~~l~~~~~-~~il~~a 81 (459)
T 3upu_A 54 AGTGATTLTKFIIEALISTGE-TGIILAA 81 (459)
T ss_dssp TTSCHHHHHHHHHHHHHHTTC-CCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHhcCC-ceEEEec
Confidence 799999999999988764322 3454443
No 491
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=45.84 E-value=8.2 Score=34.41 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQ 16 (760)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (760)
.|+||||+|.++..+
T Consensus 25 SGaGKStlal~L~~r 39 (181)
T 3tqf_A 25 ANIGKSELSLALIDR 39 (181)
T ss_dssp SSSSHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHc
Confidence 699999999999875
No 492
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=45.60 E-value=11 Score=38.39 Aligned_cols=18 Identities=39% Similarity=0.440 Sum_probs=15.8
Q ss_pred CCCcHHHHHHHHHHHHhh
Q 048566 2 GGIGKTTLVKKVARQAME 19 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~ 19 (760)
.|+||||+++.++.....
T Consensus 166 nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 166 NGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHhhccc
Confidence 699999999999988764
No 493
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=45.20 E-value=8.3 Score=36.73 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQA 17 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (760)
.|.|||||.+.++.-.
T Consensus 33 nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 33 TGAGKSVFLELIAGIV 48 (240)
T ss_dssp TTSSHHHHHHHHHTSS
T ss_pred CCCCHHHHHHHHhCCC
Confidence 5999999999998654
No 494
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=44.86 E-value=9.5 Score=34.24 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQA 17 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (760)
+|+|||||+.++.+..
T Consensus 16 ~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 16 SQCGKTALLHVFAKDC 31 (184)
T ss_dssp TTSSHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhcCC
Confidence 6999999999988753
No 495
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=44.84 E-value=8.3 Score=38.69 Aligned_cols=16 Identities=44% Similarity=0.530 Sum_probs=14.3
Q ss_pred CCcHHHHHHHHHHHHh
Q 048566 3 GIGKTTLVKKVARQAM 18 (760)
Q Consensus 3 GiGKTtLA~~~~~~~~ 18 (760)
|+||||+++.+.+...
T Consensus 17 GaGKTT~~~~La~~L~ 32 (334)
T 1p6x_A 17 GIGKSTTGRVMASAAS 32 (334)
T ss_dssp TSSHHHHHHHHHSGGG
T ss_pred CCCHHHHHHHHHHHhc
Confidence 9999999999987765
No 496
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=44.80 E-value=8.9 Score=34.44 Aligned_cols=15 Identities=20% Similarity=0.492 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQ 16 (760)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (760)
+|+|||||...+...
T Consensus 16 ~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 16 PNVGKSTIFNALTGE 30 (188)
T ss_dssp TTSSHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHhCC
Confidence 699999999999864
No 497
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=44.74 E-value=10 Score=35.23 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=14.2
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
+.|.||||+|+.+....
T Consensus 11 ~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 11 PAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CTTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 46999999999998753
No 498
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=44.67 E-value=9.5 Score=41.93 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=15.9
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
+.|.||||+|+.+.....
T Consensus 60 lsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 60 LSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 579999999999998864
No 499
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=44.49 E-value=9.7 Score=34.28 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQA 17 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (760)
+|+|||||+..+.+..
T Consensus 29 ~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 29 LSSGKSALVHRYLTGT 44 (184)
T ss_dssp TTSCHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHhcCC
Confidence 6999999998887653
No 500
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=44.44 E-value=6.2 Score=36.16 Aligned_cols=16 Identities=19% Similarity=0.513 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQA 17 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (760)
.|+||||||.+++.+.
T Consensus 43 sGsGKStLA~~La~~g 58 (205)
T 2qmh_A 43 SGVGKSETALELVQRG 58 (205)
T ss_dssp CTTTTHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHhC
Confidence 6999999999998653
Done!