Query 048567
Match_columns 352
No_of_seqs 118 out of 1208
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 18:41:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048567.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048567hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3swz_A Steroid 17-alpha-hydrox 100.0 3.9E-45 1.3E-49 353.5 25.9 297 37-352 5-313 (494)
2 3pm0_A Cypib1, cytochrome P450 100.0 6.7E-44 2.3E-48 345.6 20.6 300 37-352 6-319 (507)
3 3e6i_A CYPIIE1, P450-J, cytoch 100.0 4.6E-42 1.6E-46 330.1 25.6 294 36-352 6-307 (476)
4 3qz1_A Steroid 21-hydroxylase; 100.0 3.5E-43 1.2E-47 339.8 17.1 290 35-352 24-319 (496)
5 2hi4_A Cytochrome P450 1A2; CY 100.0 2.1E-42 7.3E-47 334.6 22.3 294 43-352 17-322 (495)
6 3s79_A Cytochrome P450 19A1; o 100.0 1.8E-42 6E-47 335.4 20.6 289 37-352 42-335 (503)
7 3tbg_A Cytochrome P450 2D6; mo 100.0 1.5E-41 5.3E-46 326.6 25.6 298 36-352 6-312 (479)
8 3czh_A Cytochrome P450 2R1; vi 100.0 4.8E-42 1.6E-46 331.0 21.7 296 37-352 9-313 (481)
9 2fdv_A Cytochrome P450 2A6; CY 100.0 8.6E-42 2.9E-46 328.7 22.6 290 43-352 11-308 (476)
10 1po5_A Cytochrome P450 2B4; ox 100.0 1E-41 3.5E-46 328.2 22.7 290 43-352 11-308 (476)
11 3k9v_A 1,25-dihydroxyvitamin D 100.0 1.2E-41 4.2E-46 327.5 23.0 294 36-352 20-323 (482)
12 1r9o_A Cytochrome P450 2C9; mo 100.0 2.3E-41 7.7E-46 325.8 24.2 290 43-352 12-309 (477)
13 3nxu_A Cytochrome P450 3A4; al 100.0 6.4E-43 2.2E-47 337.0 12.9 294 34-352 9-312 (485)
14 3gw9_A Sterol 14alpha-demethyl 100.0 1E-40 3.5E-45 318.4 21.1 287 43-352 4-295 (450)
15 2ij2_A Cytochrome P450 BM3; mo 100.0 1.3E-39 4.6E-44 313.0 25.3 287 43-352 4-293 (470)
16 3ld6_A Lanosterol 14-alpha dem 100.0 6.2E-40 2.1E-44 314.5 16.0 280 43-352 12-292 (461)
17 3n9y_A Cholesterol SIDE-chain 100.0 3.7E-39 1.3E-43 310.9 21.4 300 37-352 6-315 (487)
18 2cib_A Cytochrome P450 51; hem 100.0 1.6E-37 5.3E-42 297.4 21.8 279 43-352 5-285 (455)
19 2ve3_A Putative cytochrome P45 100.0 1.2E-37 4E-42 297.4 20.4 275 37-352 9-283 (444)
20 3dbg_A Putative cytochrome P45 100.0 6.8E-38 2.3E-42 300.8 15.5 276 43-352 24-303 (467)
21 3i3k_A Lanosterol 14-alpha dem 100.0 1.1E-37 3.8E-42 298.7 16.6 284 37-352 8-292 (461)
22 2cd8_A Cytochrome P450 monooxy 100.0 1E-35 3.5E-40 283.3 21.1 265 36-352 22-292 (436)
23 3mdm_A Cholesterol 24-hydroxyl 100.0 1.4E-34 4.9E-39 276.6 25.9 269 61-352 10-283 (456)
24 1jfb_A Nitric-oxide reductase 100.0 1.6E-33 5.5E-38 265.5 25.3 262 43-352 2-269 (404)
25 3v8d_A Cholesterol 7-alpha-mon 100.0 1.6E-35 5.6E-40 285.9 10.3 286 35-352 8-297 (491)
26 1cpt_A Cytochrome P450-TERP; o 100.0 1.2E-33 4.2E-38 268.4 19.7 274 37-352 3-296 (428)
27 1ued_A P450 OXYC, P450 monooxy 100.0 1.2E-32 4.2E-37 259.7 20.4 255 38-352 8-274 (406)
28 3dax_A Cytochrome P450 7A1; ch 100.0 1E-33 3.5E-38 273.1 12.5 286 36-352 9-297 (491)
29 2zbx_A Cytochrome P450-SU1; be 100.0 1.3E-31 4.4E-36 253.2 26.6 258 43-352 6-273 (412)
30 1izo_A P450bsbeta, cytochrome 100.0 5.7E-32 1.9E-36 256.0 23.9 261 50-352 8-271 (417)
31 3awm_A Fatty acid alpha-hydrox 100.0 1.5E-31 5E-36 253.0 23.1 264 44-352 4-270 (415)
32 1n97_A CYP175A1; electron tran 100.0 7.1E-33 2.4E-37 259.9 10.5 248 45-352 2-250 (389)
33 3aba_A Cytochrome P450; oxidor 100.0 1.4E-30 4.9E-35 245.4 25.0 243 59-352 17-266 (403)
34 3oo3_A OXY protein; cytochrome 100.0 1.3E-30 4.4E-35 244.0 23.7 241 60-352 11-255 (384)
35 3b6h_A Prostacyclin synthase; 100.0 1E-31 3.4E-36 259.8 15.5 287 35-352 13-302 (498)
36 2zwu_A Camphor 5-monooxygenase 100.0 6.1E-31 2.1E-35 248.7 20.3 258 37-352 8-278 (415)
37 1odo_A Putative cytochrome P45 100.0 1.2E-30 4E-35 246.3 21.0 249 58-352 12-271 (408)
38 3abb_A CYP105D6, cytochrome P4 100.0 9.6E-31 3.3E-35 246.9 20.2 243 58-352 21-272 (408)
39 1s1f_A Putative cytochrome P45 100.0 8.1E-31 2.8E-35 247.3 19.2 254 43-352 9-270 (406)
40 2wm5_A CYP124, putative cytoch 100.0 4.1E-30 1.4E-34 244.6 24.0 248 62-352 45-303 (435)
41 3tkt_A Cytochrome P450; aromat 100.0 2.4E-30 8.1E-35 247.3 21.8 254 63-352 47-318 (450)
42 3ivy_A Cytochrome P450 CYP125; 100.0 8.4E-31 2.9E-35 249.2 18.5 267 36-352 14-297 (433)
43 3tyw_A Putative cytochrome P45 100.0 5E-30 1.7E-34 242.7 23.7 242 60-352 28-278 (417)
44 2jjn_A Cytochrome P450 113A1; 100.0 1.4E-30 4.8E-35 246.0 19.6 255 36-352 15-270 (411)
45 2y5n_A MYCG, P-450-like protei 100.0 7.8E-30 2.7E-34 241.3 23.4 244 59-352 35-283 (417)
46 3a4g_A Vitamin D hydroxylase; 100.0 1.2E-29 4E-34 239.7 24.4 242 59-352 18-265 (411)
47 4fb2_A P450CIN; heme, monooxyg 100.0 6.3E-30 2.2E-34 240.5 21.5 241 60-352 18-261 (398)
48 3ejb_B Biotin biosynthesis cyt 100.0 1.5E-29 5.1E-34 238.4 22.7 246 61-352 13-263 (404)
49 1z8o_A 6-deoxyerythronolide B 100.0 1.4E-29 4.7E-34 238.7 21.9 242 60-352 13-270 (404)
50 1q5d_A P450 epoxidase; cytochr 100.0 9.9E-30 3.4E-34 240.8 20.9 248 60-352 25-283 (419)
51 2z36_A MOXA, cytochrome P450 t 100.0 9.2E-30 3.1E-34 240.6 20.6 255 43-352 8-274 (413)
52 3b98_A Prostaglandin I2 syntha 100.0 2.3E-31 7.8E-36 255.6 9.2 277 36-352 14-293 (475)
53 1gwi_A CYP154C1, cytochrome P4 100.0 4.4E-29 1.5E-33 235.8 23.0 244 58-352 14-271 (411)
54 2xkr_A CYP142, putative cytoch 100.0 8.2E-29 2.8E-33 232.9 24.1 241 61-352 18-259 (398)
55 2z3t_A Cytochrome P450; monoxy 100.0 6.2E-29 2.1E-33 235.7 21.1 247 61-352 20-283 (425)
56 3r9b_A Cytochrome P450 164A2; 100.0 4.1E-29 1.4E-33 236.4 18.4 249 60-352 28-285 (418)
57 2xbk_A PIMD protein; epoxidati 100.0 4.7E-28 1.6E-32 228.2 25.2 235 60-352 25-270 (404)
58 2uuq_A CYP130, cytochrome P450 100.0 1.4E-28 4.8E-33 232.5 21.1 243 61-352 25-279 (414)
59 3lxh_A Cytochrome P450; heme, 100.0 1.4E-28 4.7E-33 233.1 19.4 263 43-352 13-285 (421)
60 3buj_A CALO2; heme, iron, meta 100.0 3.8E-28 1.3E-32 228.3 20.4 242 61-352 13-262 (397)
61 2dkk_A Cytochrome P450; CYP158 100.0 1.3E-28 4.4E-33 232.5 16.9 240 60-352 26-273 (411)
62 1lfk_A OXYB, P450 monooxygenas 100.0 3E-28 1E-32 229.0 18.4 235 66-352 18-265 (398)
63 3nc3_A Cytochrome P450 CYPX; c 100.0 2.7E-28 9.2E-33 232.4 17.4 245 61-352 53-298 (441)
64 3oft_A Cytochrome P450, CYP101 100.0 6.8E-28 2.3E-32 226.4 19.2 240 60-352 23-263 (396)
65 3dsk_A Cytochrome P450 74A, ch 100.0 6.1E-29 2.1E-33 240.1 11.6 279 37-352 25-324 (495)
66 3mgx_A Putative P450 monooxyge 100.0 1.3E-27 4.3E-32 226.0 19.6 240 61-352 37-283 (415)
67 1n40_A P450 MT2, cytochrome P4 100.0 6.5E-28 2.2E-32 226.7 16.9 240 59-352 14-262 (396)
68 3rwl_A Cytochrome P450 alkane 99.9 5.1E-26 1.7E-30 215.7 23.3 247 61-352 38-294 (426)
69 3dan_A Cytochrome P450 74A2; A 99.9 9.8E-28 3.4E-32 230.2 11.4 281 37-352 6-306 (473)
70 3p3o_A Cytochrome P450; monoox 99.9 4.2E-27 1.5E-31 222.5 14.8 243 61-352 33-282 (416)
71 2wiy_A XPLA-heme, cytochrome P 99.9 5.2E-26 1.8E-30 213.5 21.3 243 61-352 20-262 (394)
72 2rfb_A Cytochrome P450; heme, 99.9 8.1E-27 2.8E-31 215.0 13.9 215 72-352 2-217 (343)
73 3b4x_A 367AA long hypothetical 99.9 9.3E-26 3.2E-30 209.8 16.1 225 64-352 2-238 (367)
74 1io7_A Cytochrome P450 CYP119; 99.9 7.6E-26 2.6E-30 210.5 15.5 225 64-352 2-237 (368)
75 4dnj_A Putative cytochrome P45 99.9 1.3E-23 4.6E-28 198.2 16.2 256 48-352 18-280 (412)
76 4dxy_A Cytochrome P450, CYP101 99.9 3.4E-21 1.2E-25 181.9 22.0 245 62-352 38-284 (417)
77 2yjn_B Erycii, DTDP-4-keto-6-d 99.4 1.8E-15 6.3E-20 140.3 -6.4 204 43-352 35-251 (381)
78 1s79_A Lupus LA protein; RRM, 81.3 5.3 0.00018 28.6 6.9 59 50-110 13-79 (103)
79 2diu_A KIAA0430 protein; struc 81.2 1.9 6.5E-05 30.7 4.2 61 51-112 12-76 (96)
80 2krb_A Eukaryotic translation 79.1 8.1 0.00028 25.8 7.0 51 52-102 5-66 (81)
81 3lqv_A PRE-mRNA branch site pr 78.3 9.8 0.00034 27.4 7.7 58 43-102 3-66 (115)
82 1iqt_A AUF1, heterogeneous nuc 76.0 6.1 0.00021 25.9 5.5 56 52-109 3-67 (75)
83 4f25_A Polyadenylate-binding p 71.4 11 0.00036 27.4 6.3 58 51-110 8-73 (115)
84 4fxv_A ELAV-like protein 1; RN 70.5 9 0.00031 27.0 5.5 57 51-109 22-88 (99)
85 2mss_A Protein (musashi1); RNA 70.3 11 0.00039 24.5 5.8 56 52-109 3-67 (75)
86 1whx_A Hypothetical protein ri 69.1 20 0.00068 25.7 7.3 59 51-111 13-75 (111)
87 2cph_A RNA binding motif prote 66.0 24 0.00083 24.7 7.2 60 50-111 17-88 (107)
88 3s7r_A Heterogeneous nuclear r 65.2 11 0.00037 25.5 4.9 54 49-104 12-74 (87)
89 2dgs_A DAZ-associated protein 64.3 27 0.00092 24.1 7.1 60 50-111 12-80 (99)
90 1x5u_A Splicing factor 3B subu 63.6 25 0.00086 24.6 6.9 60 50-111 17-86 (105)
91 3beg_B Splicing factor, argini 63.4 32 0.0011 24.8 7.5 60 50-111 18-80 (115)
92 2nlw_A Eukaryotic translation 62.2 25 0.00086 24.8 6.6 61 50-110 17-89 (105)
93 1p27_B RNA-binding protein 8A; 61.2 32 0.0011 24.1 7.1 58 51-110 26-93 (106)
94 3ex7_B RNA-binding protein 8A; 60.6 33 0.0011 25.0 7.2 60 50-111 24-93 (126)
95 2a3j_A U1 small nuclear ribonu 60.4 13 0.00046 27.7 4.9 62 50-111 31-101 (127)
96 2dnz_A Probable RNA-binding pr 58.9 39 0.0013 22.9 7.6 61 49-111 6-76 (95)
97 3md1_A Nuclear and cytoplasmic 58.8 23 0.0008 23.4 5.7 55 52-108 5-69 (83)
98 3ucg_A Polyadenylate-binding p 58.6 20 0.00067 24.2 5.3 56 52-109 10-74 (89)
99 3mdf_A Peptidyl-prolyl CIS-tra 58.6 37 0.0013 22.5 6.8 54 47-102 6-68 (85)
100 2dgt_A RNA-binding protein 30; 57.8 24 0.00083 24.0 5.7 59 50-110 12-72 (92)
101 1x5p_A Negative elongation fac 57.7 24 0.00081 24.4 5.7 49 50-102 17-68 (97)
102 2dnp_A RNA-binding protein 14; 57.6 41 0.0014 22.7 6.9 62 47-110 8-71 (90)
103 4a8x_A RNA-binding protein wit 57.4 33 0.0011 22.9 6.3 56 52-109 8-74 (88)
104 3d2w_A TAR DNA-binding protein 57.4 24 0.00082 24.1 5.6 51 47-99 10-64 (89)
105 2kvi_A Nuclear polyadenylated 57.2 44 0.0015 22.9 7.1 61 50-111 12-74 (96)
106 2pe8_A Splicing factor 45; RRM 57.0 20 0.00069 25.6 5.2 67 45-111 5-85 (105)
107 1whw_A Hypothetical protein ri 56.9 32 0.0011 23.7 6.3 59 50-110 10-78 (99)
108 2rs2_A Musashi-1, RNA-binding 56.8 23 0.00078 25.3 5.6 53 50-104 27-88 (109)
109 1uaw_A Mouse-musashi-1; RNP-ty 56.7 18 0.0006 23.6 4.6 56 52-109 4-68 (77)
110 1wg5_A Heterogeneous nuclear r 56.7 30 0.001 24.3 6.2 60 50-111 17-85 (104)
111 1x4c_A Splicing factor, argini 56.6 33 0.0011 24.3 6.4 51 50-102 17-69 (108)
112 2dgu_A Heterogeneous nuclear r 55.7 29 0.00099 24.2 6.0 59 50-110 13-73 (103)
113 2hvz_A Splicing factor, argini 55.1 26 0.00088 24.4 5.6 58 52-111 4-66 (101)
114 2fy1_A RNA-binding motif prote 54.6 33 0.0011 24.7 6.3 60 50-111 9-77 (116)
115 2dgx_A KIAA0430 protein; RRM d 54.1 13 0.00044 25.9 3.7 61 50-110 11-80 (96)
116 2cq3_A RNA-binding protein 9; 54.1 44 0.0015 23.2 6.7 59 50-110 17-83 (103)
117 3s8s_A Histone-lysine N-methyl 53.9 57 0.0019 23.2 8.3 52 49-102 7-67 (110)
118 2cqc_A Arginine/serine-rich sp 53.6 36 0.0012 23.1 6.1 56 45-102 12-76 (95)
119 2wbr_A GW182, gawky, LD47780P; 53.3 40 0.0014 23.4 6.0 52 48-101 7-61 (89)
120 1rk8_A CG8781-PA, CG8781-PA pr 53.1 33 0.0011 26.6 6.4 57 51-109 75-141 (165)
121 2cpi_A CCR4-NOT transcription 52.9 16 0.00056 26.1 4.3 59 50-110 17-91 (111)
122 2cpz_A CUG triplet repeat RNA- 52.8 23 0.00079 25.4 5.1 59 50-110 27-95 (115)
123 1x4g_A Nucleolysin TIAR; struc 52.8 41 0.0014 23.7 6.4 58 50-109 27-88 (109)
124 1oo0_B CG8781-PA, drosophila Y 52.4 43 0.0015 23.6 6.5 56 51-108 29-94 (110)
125 2do4_A Squamous cell carcinoma 52.3 50 0.0017 22.7 6.7 60 49-110 18-86 (100)
126 2jwn_A Embryonic polyadenylate 52.1 26 0.00088 25.5 5.3 57 51-109 39-104 (124)
127 3bs9_A Nucleolysin TIA-1 isofo 52.0 24 0.00083 23.5 4.9 51 50-102 8-67 (87)
128 1x5s_A Cold-inducible RNA-bind 51.9 52 0.0018 22.7 6.8 62 48-111 12-83 (102)
129 3ulh_A THO complex subunit 4; 51.7 33 0.0011 24.0 5.8 57 50-108 31-96 (107)
130 2err_A Ataxin-2-binding protei 51.4 24 0.00082 25.1 5.0 50 51-102 32-88 (109)
131 1sjq_A Polypyrimidine tract-bi 51.4 44 0.0015 23.9 6.3 56 45-102 13-71 (105)
132 2dh8_A DAZ-associated protein 51.4 22 0.00076 24.9 4.7 59 50-110 18-85 (105)
133 2kxn_B Transformer-2 protein h 51.4 70 0.0024 23.5 8.9 60 49-110 47-116 (129)
134 2jvo_A Nucleolar protein 3; nu 50.8 35 0.0012 24.2 5.8 57 51-109 34-92 (108)
135 2i2y_A Fusion protein consists 50.8 69 0.0023 24.1 7.8 60 50-111 75-139 (150)
136 2cqi_A Nucleolysin TIAR; RNA r 50.7 40 0.0014 23.4 6.0 50 50-101 17-73 (103)
137 2dgv_A HnRNP M, heterogeneous 50.1 55 0.0019 22.0 6.8 59 50-110 10-76 (92)
138 2la6_A RNA-binding protein FUS 50.0 48 0.0016 22.8 6.3 59 50-110 15-91 (99)
139 3ns6_A Eukaryotic translation 49.9 33 0.0011 23.9 5.4 59 50-108 8-80 (100)
140 1nu4_A U1A RNA binding domain; 49.5 19 0.00065 24.8 4.0 58 50-107 10-76 (97)
141 2cpf_A RNA binding motif prote 49.2 53 0.0018 22.4 6.4 59 50-110 7-78 (98)
142 2d9p_A Polyadenylate-binding p 49.1 63 0.0021 22.3 7.6 63 47-111 14-84 (103)
143 2cpj_A Non-POU domain-containi 49.0 37 0.0013 23.4 5.6 60 50-111 17-80 (99)
144 1x4b_A Heterogeneous nuclear r 49.0 26 0.00088 25.1 4.8 58 51-110 30-96 (116)
145 2dgo_A Cytotoxic granule-assoc 49.0 36 0.0012 24.2 5.6 59 50-110 17-85 (115)
146 2cqd_A RNA-binding region cont 48.6 39 0.0013 24.1 5.8 58 50-109 19-85 (116)
147 2cq4_A RNA binding motif prote 48.3 30 0.001 24.7 5.1 52 51-104 28-88 (114)
148 1x4e_A RNA binding motif, sing 48.1 38 0.0013 22.5 5.3 53 47-101 4-65 (85)
149 1sjr_A Polypyrimidine tract-bi 47.8 46 0.0016 26.0 6.3 54 52-107 50-109 (164)
150 2div_A TRNA selenocysteine ass 47.7 46 0.0016 22.8 5.9 64 46-111 7-81 (99)
151 2ywk_A Putative RNA-binding pr 47.7 42 0.0014 22.8 5.7 51 50-102 18-76 (95)
152 2voo_A Lupus LA protein; RNA-b 47.6 30 0.001 27.8 5.4 56 52-109 113-176 (193)
153 3ue2_A Poly(U)-binding-splicin 47.2 33 0.0011 25.1 5.1 65 47-111 19-100 (118)
154 2bz2_A Negative elongation fac 47.0 49 0.0017 24.1 6.1 56 51-110 42-101 (121)
155 2dnh_A Bruno-like 5, RNA bindi 46.9 64 0.0022 22.3 6.6 52 49-102 16-75 (105)
156 2jvr_A Nucleolar protein 3; RN 46.5 37 0.0013 24.5 5.3 59 50-110 30-95 (111)
157 2la4_A Nuclear and cytoplasmic 46.4 47 0.0016 22.9 5.8 50 51-102 30-82 (101)
158 2e5j_A Methenyltetrahydrofolat 46.3 68 0.0023 21.9 6.8 59 50-110 21-84 (97)
159 2jrs_A RNA-binding protein 39; 45.8 76 0.0026 22.3 7.7 59 50-110 28-96 (108)
160 3s6e_A RNA-binding protein 39; 45.5 25 0.00087 25.6 4.2 68 44-111 3-84 (114)
161 1x4f_A Matrin 3; structural ge 45.2 66 0.0022 23.2 6.4 54 47-101 24-80 (112)
162 1p1t_A Cleavage stimulation fa 44.6 54 0.0018 22.6 5.9 51 50-102 10-69 (104)
163 2dhg_A TRNA selenocysteine ass 44.4 75 0.0026 21.9 8.0 65 45-111 6-81 (104)
164 1u6f_A Tcubp1, RNA-binding pro 44.2 53 0.0018 24.3 6.1 58 51-110 45-112 (139)
165 2j76_E EIF-4B, EIF4B, eukaryot 43.9 53 0.0018 22.7 5.7 56 52-110 23-88 (100)
166 2kn4_A Immunoglobulin G-bindin 43.9 72 0.0025 24.1 7.0 60 50-111 72-141 (158)
167 2e5h_A Zinc finger CCHC-type a 43.4 73 0.0025 21.4 6.7 52 49-102 17-77 (94)
168 3zzy_A Polypyrimidine tract-bi 43.2 48 0.0016 24.8 5.5 51 50-102 30-85 (130)
169 3v4m_A Splicing factor U2AF 65 42.4 52 0.0018 23.3 5.5 46 66-111 31-88 (105)
170 2cqb_A Peptidyl-prolyl CIS-tra 42.1 45 0.0015 23.0 5.1 62 47-110 11-82 (102)
171 3n9u_C Cleavage and polyadenyl 41.7 53 0.0018 25.2 5.8 55 52-108 59-125 (156)
172 1wi8_A EIF-4B, eukaryotic tran 41.6 62 0.0021 22.4 5.8 61 47-110 14-84 (104)
173 2cq0_A Eukaryotic translation 41.5 30 0.001 24.1 4.1 51 50-102 17-76 (103)
174 1h2v_Z 20 kDa nuclear CAP bind 41.5 49 0.0017 25.1 5.6 60 49-110 40-109 (156)
175 1why_A Hypothetical protein ri 41.4 81 0.0028 21.4 7.9 58 49-108 18-79 (97)
176 2ad9_A Polypyrimidine tract-bi 41.3 75 0.0026 23.2 6.3 53 47-101 30-85 (119)
177 2qfj_A FBP-interacting repress 41.0 88 0.003 24.8 7.5 50 51-102 31-89 (216)
178 2e5g_A U6 snRNA-specific termi 41.0 72 0.0025 21.6 6.0 58 51-110 11-72 (94)
179 1l3k_A Heterogeneous nuclear r 40.7 51 0.0017 25.8 5.8 58 50-109 15-81 (196)
180 2cq1_A PTB-like protein L; RRM 40.4 82 0.0028 22.0 6.3 52 48-101 15-69 (101)
181 2do0_A HnRNP M, heterogeneous 39.7 62 0.0021 22.8 5.7 59 50-110 17-84 (114)
182 2d9o_A DNAJ (HSP40) homolog, s 39.5 96 0.0033 21.7 6.5 47 64-111 31-81 (100)
183 2khc_A Testis-specific RNP-typ 39.4 42 0.0014 24.0 4.7 49 52-102 44-101 (118)
184 2dnm_A SRP46 splicing factor; 39.0 92 0.0032 21.4 6.8 60 50-111 15-84 (103)
185 2dnq_A RNA-binding protein 4B; 38.8 86 0.0029 20.9 7.1 60 50-111 10-71 (90)
186 2kt5_A RNA and export factor-b 38.8 84 0.0029 22.6 6.4 58 51-110 38-104 (124)
187 2xs2_A Deleted in azoospermia- 38.8 26 0.00089 24.4 3.3 57 50-109 11-75 (102)
188 3pgw_S U1-70K; protein-RNA com 38.7 49 0.0017 30.5 6.0 59 50-110 104-172 (437)
189 2dis_A Unnamed protein product 38.6 97 0.0033 21.5 6.9 51 50-102 10-71 (109)
190 2hzc_A Splicing factor U2AF 65 38.4 83 0.0028 20.7 6.2 55 51-107 9-77 (87)
191 2ytc_A PRE-mRNA-splicing facto 38.4 82 0.0028 20.6 7.5 51 50-102 14-67 (85)
192 2cjk_A Nuclear polyadenylated 38.2 57 0.0019 24.7 5.6 58 51-110 90-156 (167)
193 2ki2_A SS-DNA binding protein 38.1 44 0.0015 22.4 4.4 56 52-110 5-70 (90)
194 1wex_A Hypothetical protein (r 37.8 88 0.003 22.0 6.1 52 48-101 15-69 (104)
195 2lea_A Serine/arginine-rich sp 37.8 94 0.0032 22.9 6.6 59 50-110 49-117 (135)
196 2cpd_A Apobec-1 stimulating pr 37.6 89 0.003 21.3 6.1 58 50-109 17-78 (99)
197 2xnq_A Nuclear polyadenylated 37.6 97 0.0033 21.2 6.6 51 51-102 25-76 (97)
198 2x1f_A MRNA 3'-END-processing 37.5 92 0.0031 21.1 6.1 49 52-102 6-63 (96)
199 3p5t_L Cleavage and polyadenyl 37.4 49 0.0017 22.3 4.6 57 52-110 5-73 (90)
200 3r27_A HnRNP L, heterogeneous 36.7 1.1E+02 0.0037 21.5 6.7 54 47-102 20-76 (100)
201 3md3_A Nuclear and cytoplasmic 36.5 65 0.0022 24.2 5.7 57 52-110 4-69 (166)
202 2dgp_A Bruno-like 4, RNA bindi 36.5 87 0.003 21.6 6.0 51 50-102 15-74 (106)
203 2dnr_A Synaptojanin-1; RRM dom 35.7 69 0.0024 22.3 4.9 46 65-110 30-76 (91)
204 2cqg_A TDP-43, TAR DNA-binding 35.0 88 0.003 21.5 5.7 51 50-102 17-76 (103)
205 1l3k_A Heterogeneous nuclear r 35.0 59 0.002 25.4 5.3 58 51-110 107-173 (196)
206 1b35_D CRPV, protein (cricket 34.9 24 0.00081 21.3 2.0 27 49-75 30-56 (57)
207 2cpy_A RNA-binding protein 12; 34.3 48 0.0016 23.7 4.3 59 47-107 14-81 (114)
208 1fxl_A Paraneoplastic encephal 34.1 68 0.0023 24.1 5.4 57 52-110 6-72 (167)
209 2ghp_A U4/U6 snRNA-associated 34.0 64 0.0022 27.3 5.7 60 49-110 42-108 (292)
210 1wf1_A RNA-binding protein RAL 33.8 79 0.0027 22.1 5.4 60 50-110 29-90 (110)
211 2dit_A HIV TAT specific factor 33.6 66 0.0023 22.8 4.9 67 44-110 11-92 (112)
212 1x4d_A Matrin 3; structural ge 33.5 94 0.0032 21.9 5.6 57 45-102 12-71 (102)
213 2f3j_A RNA and export factor b 33.4 1.2E+02 0.0042 23.6 6.9 47 64-110 102-157 (177)
214 2dha_A FLJ20171 protein; RRM d 32.7 48 0.0017 24.4 4.1 58 50-109 25-94 (123)
215 2ku7_A MLL1 PHD3-CYP33 RRM chi 32.7 1.3E+02 0.0045 21.8 6.8 50 51-102 66-124 (140)
216 1wf0_A TDP-43, TAR DNA-binding 32.0 55 0.0019 21.8 4.1 47 51-99 8-58 (88)
217 2adc_A Polypyrimidine tract-bi 31.9 1.4E+02 0.0049 24.1 7.4 60 51-111 37-101 (229)
218 2cpe_A RNA-binding protein EWS 31.8 67 0.0023 22.6 4.7 59 50-110 17-93 (113)
219 2l2t_A Receptor tyrosine-prote 31.8 48 0.0016 19.7 3.0 7 7-13 5-11 (44)
220 2dng_A Eukaryotic translation 31.8 85 0.0029 21.6 5.2 62 46-110 13-83 (103)
221 2hgn_A Heterogeneous nuclear r 31.2 65 0.0022 24.3 4.6 59 50-111 48-114 (139)
222 4f02_A Polyadenylate-binding p 30.1 78 0.0027 25.4 5.4 52 49-102 16-76 (213)
223 1x4h_A RNA-binding protein 28; 30.0 1.4E+02 0.0047 20.7 7.8 52 49-102 16-76 (111)
224 2cpx_A Hypothetical protein FL 28.9 1.3E+02 0.0044 21.1 5.9 61 49-111 26-96 (115)
225 2e5i_A Heterogeneous nuclear r 28.6 1E+02 0.0035 22.7 5.2 55 52-108 29-88 (124)
226 1b7f_A Protein (SXL-lethal pro 28.4 1.4E+02 0.0046 22.4 6.3 57 52-110 7-73 (168)
227 1x4a_A Splicing factor, argini 27.9 1.5E+02 0.0052 20.5 7.5 59 50-110 24-89 (109)
228 1wez_A HnRNP H', FTP-3, hetero 27.4 86 0.0029 21.8 4.5 59 50-111 17-83 (102)
229 1ufw_A Synaptojanin 2; RNP dom 27.3 68 0.0023 22.6 3.7 46 65-110 39-85 (95)
230 1x5t_A Splicing factor 3B subu 27.0 1.1E+02 0.0036 20.6 4.9 51 50-102 7-67 (96)
231 1jmt_A Splicing factor U2AF 35 26.9 1.1E+02 0.0038 21.4 5.1 39 72-110 49-96 (104)
232 2g4b_A Splicing factor U2AF 65 26.6 1.5E+02 0.0051 22.3 6.3 52 49-102 95-155 (172)
233 1x5o_A RNA binding motif, sing 26.6 1.1E+02 0.0037 21.5 5.1 51 50-102 27-85 (114)
234 1qm9_A Polypyrimidine tract-bi 26.4 1.4E+02 0.0048 23.2 6.2 59 52-111 7-70 (198)
235 1whv_A Poly(A)-specific ribonu 26.0 85 0.0029 22.2 4.0 37 65-101 30-67 (100)
236 2qfj_A FBP-interacting repress 25.6 1.5E+02 0.0051 23.3 6.3 59 51-111 128-196 (216)
237 2db1_A Heterogeneous nuclear r 25.5 59 0.002 23.4 3.4 57 50-108 19-86 (118)
238 2lmi_A GRSF-1, G-rich sequence 25.5 1.7E+02 0.0058 20.2 6.0 59 50-110 13-82 (107)
239 2hgm_A HNRPF protein, heteroge 25.0 1.6E+02 0.0054 21.6 5.8 58 50-110 44-111 (126)
240 3q2s_C Cleavage and polyadenyl 24.7 1E+02 0.0036 25.2 5.2 50 51-102 71-131 (229)
241 4f02_A Polyadenylate-binding p 24.6 1.3E+02 0.0044 24.0 5.7 57 51-109 106-170 (213)
242 2cq2_A Hypothetical protein LO 24.2 2E+02 0.0069 20.7 6.7 55 46-102 23-82 (114)
243 1fxl_A Paraneoplastic encephal 23.7 2.1E+02 0.0071 21.1 6.6 57 51-109 91-157 (167)
244 3nmr_A Cugbp ELAV-like family 23.5 1.6E+02 0.0053 22.2 5.9 51 50-102 97-155 (175)
245 1wel_A RNA-binding protein 12; 23.4 75 0.0026 22.9 3.7 58 50-109 27-93 (124)
246 2ek1_A RNA-binding protein 12; 23.3 60 0.002 21.9 2.9 58 50-109 17-84 (95)
247 3tyt_A Heterogeneous nuclear r 23.2 1.7E+02 0.0058 23.3 6.2 60 50-111 6-71 (205)
248 2dnn_A RNA-binding protein 12; 23.0 1.5E+02 0.005 21.0 5.1 58 50-110 18-83 (109)
249 1b7f_A Protein (SXL-lethal pro 22.8 1.9E+02 0.0064 21.5 6.2 51 50-102 91-150 (168)
250 3pgw_A U1-A; protein-RNA compl 21.1 1.1E+02 0.0037 25.7 4.7 61 50-110 11-80 (282)
No 1
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=100.00 E-value=3.9e-45 Score=353.51 Aligned_cols=297 Identities=21% Similarity=0.337 Sum_probs=232.5
Q ss_pred CcCCCCCCCCCCCCCcccccccCC--CCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCcccc
Q 048567 37 NKLNLLPPPGPKPWPLIGNLNLIG--QLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPALL 114 (352)
Q Consensus 37 ~~~~~~~~PGp~~~pi~G~l~~~~--~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~ 114 (352)
+..+ +||||+++|++||++++. +.++..+.+|+++|||||++++|+.++|+++||++++++|.+++..|++|+...
T Consensus 5 ~~~~--~PPgP~~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~~k~il~~~~~~f~~rp~~~ 82 (494)
T 3swz_A 5 TGAK--YPKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMA 82 (494)
T ss_dssp ---------CCBCCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTBBCCCCH
T ss_pred CCCC--CCCCCCCCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCCCCEEEECCHHHHHHHHHhCcHhhCCCCCcH
Confidence 3455 899999999999999983 357888999999999999999999999999999999999999999999998754
Q ss_pred cccccccCCceeEecCCChhHHHhhhhhhhhcCCh--hhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHH
Q 048567 115 AGKHANFNYLVMATAPYGPHWRQTRKTFKTQILSP--KRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLYM 192 (352)
Q Consensus 115 ~~~~~~~~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~--~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~~ 192 (352)
....+..++.|+++.++|+.||++||++. +.|+. ..+..+.+.+.++++.+++.|.+. .++++|+.+.+..
T Consensus 83 ~~~~~~~~~~gl~~~~~g~~wr~~Rr~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~------~~~~vd~~~~~~~ 155 (494)
T 3swz_A 83 TLDIASNNRKGIAFADSGAHWQLHRRLAM-ATFALFKDGDQKLEKIICQEISTLCDMLATH------NGQSIDISFPVFV 155 (494)
T ss_dssp HHHHHTTTTCSSSSSCSSHHHHHHHHHHH-HHTTTTSSSTTCHHHHHHHHHHHHHHHHHHT------TTEEECCHHHHHH
T ss_pred HHHHhccCCCCeEeCCCCHHHHHHHHHHH-HHHHHhcchHHHHHHHHHHHHHHHHHHHHHc------CCCcccHHHHHHH
Confidence 44444444667777778999999999986 77763 456789999999999999998752 5678999999999
Q ss_pred HHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHH
Q 048567 193 FNLATMSRMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLD 272 (352)
Q Consensus 193 ~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~ 272 (352)
+++|+|+.++||.+++..+ +....+......+........+.+++|++++++ ....+++.+..+.+.+++..+++
T Consensus 156 ~t~dvi~~~~fG~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~p-~~~~~~~~~~~~~~~~~~~~~i~ 230 (494)
T 3swz_A 156 AVTNVISLICFNTSYKNGD----PELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFP-NKTLEKLKSHVKIRNDLLNKILE 230 (494)
T ss_dssp HHHHHHHHHHHSCCCCTTC----THHHHHHHHHHHHHHHHCSSSSCCSSCGGGTSC-CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcCCCCC----HHHHHHHHHHHHHHHhcccchHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999886533 233334444444444444445667889988773 23346667777788888888887
Q ss_pred HHHHHhccccCCCCCCccHHHHHHhccCCC--------CcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChH
Q 048567 273 EHERHAKRKSFNEHGTKDMVDVLLQLADDP--------TLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPR 344 (352)
Q Consensus 273 ~~~~~~~~~~~~~~~~~d~l~~lL~~~~~~--------~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pe 344 (352)
++++.. ......|+++.||+...+. ..+..+++++|..++.++++||+||||++|+|++++|++||+
T Consensus 231 ~~~~~~-----~~~~~~d~l~~ll~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~ 305 (494)
T 3swz_A 231 NYKEKF-----RSDSITNMLDTLMQAKMNSDNGNAGPDQDSELLSDNHILTTIGDIFGAGVETTTSVVKWTLAFLLHNPQ 305 (494)
T ss_dssp HHTTTC-----CTTCCCSHHHHHHHHHHTSCCC----CCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHhh-----cccchhHHHHHHHHHHHhhhcccccccccccccCHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhCHH
Confidence 776543 2345679999999864211 012358999999999999999999999999999999999999
Q ss_pred HHHHhhhC
Q 048567 345 VIQKATEE 352 (352)
Q Consensus 345 vq~kl~~E 352 (352)
+|+|+|+|
T Consensus 306 ~q~kl~~E 313 (494)
T 3swz_A 306 VKKKLYEE 313 (494)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999987
No 2
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.7e-44 Score=345.60 Aligned_cols=300 Identities=21% Similarity=0.373 Sum_probs=217.9
Q ss_pred CcCCCCCCCCCCCCCcccccccCCCCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCcccccc
Q 048567 37 NKLNLLPPPGPKPWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPALLAG 116 (352)
Q Consensus 37 ~~~~~~~~PGp~~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~~~ 116 (352)
++.+ +||||+++|++||++++.++++..+.+|+++|||||++++|+.++|+++||+++++||.+++..|.+|+.....
T Consensus 6 ~~~~--~pPgP~~~P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~~ 83 (507)
T 3pm0_A 6 SSKG--KPPGPFAWPLIGNAAAVGQAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQGSAFADRPSFASF 83 (507)
T ss_dssp ------------------------CCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTSCBCCCCHHH
T ss_pred CCCC--CCcCCCCCCeeCchhhcCccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCcchHH
Confidence 3456 79999999999999999778899999999999999999999999999999999999999988889888765433
Q ss_pred cccccCCceeEecCCChhHHHhhhhhhhhcCChhh------hhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHH
Q 048567 117 KHANFNYLVMATAPYGPHWRQTRKTFKTQILSPKR------LVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRL 190 (352)
Q Consensus 117 ~~~~~~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~------l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~ 190 (352)
.... +|.+++++.+|+.|+++||++. +.|+... ++.+.+.+.++++.+++.+.+. ...++++|+.+.+
T Consensus 84 ~~~~-~g~~l~~~~~g~~w~~~R~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~----~~~~~~vd~~~~~ 157 (507)
T 3pm0_A 84 RVVS-GGRSMAFGHYSEHWKVQRRAAH-SMMRNFFTRQPRSRQVLEGHVLSEARELVALLVRG----SADGAFLDPRPLT 157 (507)
T ss_dssp HHGG-GGTCSSSSCSSHHHHHHHHHHH-HHHHHSTTSSTTHHHHHHHHHHHHHHHHHHHHHHT----TGGGCCBCCHHHH
T ss_pred Hhhc-CCCceEECCCChHHHHHHHHHH-HHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhh----cccCCCcChHHHH
Confidence 3322 4567777777999999999985 5544322 2348999999999999999864 2346789999999
Q ss_pred HHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCcc--chHHHHHHHHHHHHHHHH
Q 048567 191 YMFNLATMSRMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQ--GNVKRMKAVKKKADKFYE 268 (352)
Q Consensus 191 ~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~--~~~~~~~~~~~~~~~~~~ 268 (352)
..+++|+|+.++||.+++..+ .....+...+..+..........+++|++++++.. +..+++.+..+.+.+++.
T Consensus 158 ~~~~~dvi~~~~fG~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~lp~~~~~~~~~~~~~~~~~~~~~~ 233 (507)
T 3pm0_A 158 VVAVANVMSAVCFGCRYSHDD----PEFRELLSHNEEFGRTVGAGSLVDVMPWLQYFPNPVRTVFREFEQLNRNFSNFIL 233 (507)
T ss_dssp HHHHHHHHHHHHTSCCCCTTC----HHHHHHTSCHHHHHHHHSTTCCTTTCGGGGGSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccCCCCC----HHHHHHHHHHHHHHHhcccchHHHHhHHHHHcCchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987543 23444544555555544444455678988776321 134667777888888999
Q ss_pred HHHHHHHHHhccccCCCCCCccHHHHHHhccCCCC------cCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhC
Q 048567 269 HVLDEHERHAKRKSFNEHGTKDMVDVLLQLADDPT------LEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKN 342 (352)
Q Consensus 269 ~~i~~~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~------~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~ 342 (352)
.+++++++.. . .+..+.|+++.|+...+... .+..+++++|.+++.++++||+|||+++|+|++++|++|
T Consensus 234 ~~i~~~~~~~-~---~~~~~~d~l~~ll~~~~~~~~~~~~~~~~~l~~~~i~~~~~~l~~AG~dTta~~l~~~l~~L~~~ 309 (507)
T 3pm0_A 234 DKFLRHCESL-R---PGAAPRDMMDAFILSAEKKAAGDSHGGGARLDLENVPATITDIFGASQDTLSTALQWLLLLFTRY 309 (507)
T ss_dssp HHHHHHHHHC-C---TTCCCCSHHHHHHHHHHHHHSCC----CCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcc-c---cccCCccHHHHHHHHhhhhccccccCCCCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhC
Confidence 9998887765 1 22457899999996542110 022589999999999999999999999999999999999
Q ss_pred hHHHHHhhhC
Q 048567 343 PRVIQKATEE 352 (352)
Q Consensus 343 Pevq~kl~~E 352 (352)
|++|+|||+|
T Consensus 310 P~~~~kl~~E 319 (507)
T 3pm0_A 310 PDVQTRVQAE 319 (507)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999987
No 3
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=100.00 E-value=4.6e-42 Score=330.12 Aligned_cols=294 Identities=22% Similarity=0.332 Sum_probs=227.0
Q ss_pred cCcCCCCCCCCCCCCCcccccccC-CCCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCcccc
Q 048567 36 RNKLNLLPPPGPKPWPLIGNLNLI-GQLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPALL 114 (352)
Q Consensus 36 ~~~~~~~~~PGp~~~pi~G~l~~~-~~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~ 114 (352)
+++.+ +||||+++|++||++++ .++++..+.+|+++|||||++++|+.++|+++||+++++||.+++..|++|+...
T Consensus 6 ~~~~~--lpPgP~~~PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~~~~v~~il~~~~~~f~~r~~~~ 83 (476)
T 3e6i_A 6 SSKGK--LPPGPFPLPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEALLDYKDEFSGRGDLP 83 (476)
T ss_dssp ----C--CCCCCCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTSTTTTCEECCCG
T ss_pred cCCCC--CCcCCCCcccccChhhhccccHhHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcchHhhCCCCCCc
Confidence 44567 89999999999999998 5678899999999999999999999999999999999999999888888877544
Q ss_pred cccccccCCceeEecCCChhHHHhhhhhhhhcCChhhh--hhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHH
Q 048567 115 AGKHANFNYLVMATAPYGPHWRQTRKTFKTQILSPKRL--VQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLYM 192 (352)
Q Consensus 115 ~~~~~~~~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l--~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~~ 192 (352)
....+. ++ |+++ .+|+.|+++||+.. +.|+...+ ..+.+.++++++.+++.|.+. .++++|+.+.+..
T Consensus 84 ~~~~~~-~~-~l~~-~~g~~w~~~Rr~~~-~~l~~~~~~~~~~~~~i~~~~~~l~~~l~~~------~~~~~d~~~~~~~ 153 (476)
T 3e6i_A 84 AFHAHR-DR-GIIF-NNGPTWKDIRRFSL-TTLRNYGMGKQGNESRIQREAHFLLEALRKT------QGQPFDPTFLIGC 153 (476)
T ss_dssp GGGGGT-TS-SSTT-CCSTTHHHHHHHHH-HHHHHTC-CCSHHHHHHHHHHHHHHHHHHTT------TTSCBCTHHHHTH
T ss_pred hhheec-CC-CEEe-cCCcHHHHHHHHHH-HHHHhcCCCchHHHHHHHHHHHHHHHHHHHh------CCCCcChHHHHHH
Confidence 333332 23 5554 45999999999875 55554333 346799999999999999752 4678999999999
Q ss_pred HHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhcCC--Ccccccc-cccccCccchHHHHHHHHHHHHHHHHH
Q 048567 193 FNLATMSRMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGIL--DIGDAIP-WLAFLDLQGNVKRMKAVKKKADKFYEH 269 (352)
Q Consensus 193 ~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~P-~l~~l~~~~~~~~~~~~~~~~~~~~~~ 269 (352)
+++|+|+.++||.+++..+ .....+...+.+.+...... .+.+.+| +++++ ++..++..+..+.+.+++.+
T Consensus 154 ~~~dvi~~~~fG~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l--p~~~~~~~~~~~~~~~~~~~ 227 (476)
T 3e6i_A 154 APCNVIADILFRKHFDYND----EKFLRLMYLFNENFHLLSTPWLQLYNNFPSFLHYL--PGSHRKVIKNVAEVKEYVSE 227 (476)
T ss_dssp HHHHHHHHHHHSCCCCTTC----HHHHHHHHHHHHHHHHTTSHHHHHHHHSHHHHTTS--CSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCC----HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHc--CcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987643 23344555555544433221 1224466 55555 34456677788888999999
Q ss_pred HHHHHHHHhccccCCCCCCccHHHHHHhccCCC--CcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHH
Q 048567 270 VLDEHERHAKRKSFNEHGTKDMVDVLLQLADDP--TLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQ 347 (352)
Q Consensus 270 ~i~~~~~~~~~~~~~~~~~~d~l~~lL~~~~~~--~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~ 347 (352)
+|+++++.. +...+.|+++.||....++ +.+..++++++.+++.++++||+|||+++|+|++++|++||++|+
T Consensus 228 ~i~~~~~~~-----~~~~~~d~~~~ll~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~~~~ 302 (476)
T 3e6i_A 228 RVKEHHQSL-----DPNCPRDLTDCLLVEMEKEKHSAERLYTMDGITVTVADLFFAGTETTSTTLRYGLLILMKYPEIEE 302 (476)
T ss_dssp HHHHHHHTC-----CTTSCCSHHHHHHHHHHSSSSCSSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHhhcC-----CCCCCccHHHHHHHHHHhcccCCCCCcCHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcCHHHHH
Confidence 998887654 2234679999999754321 113458999999999999999999999999999999999999999
Q ss_pred HhhhC
Q 048567 348 KATEE 352 (352)
Q Consensus 348 kl~~E 352 (352)
|+|+|
T Consensus 303 ~l~~E 307 (476)
T 3e6i_A 303 KLHEE 307 (476)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99987
No 4
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus}
Probab=100.00 E-value=3.5e-43 Score=339.81 Aligned_cols=290 Identities=23% Similarity=0.347 Sum_probs=223.4
Q ss_pred hcCcCCCCCCCCCCCCCcccccccC-CCCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCccc
Q 048567 35 SRNKLNLLPPPGPKPWPLIGNLNLI-GQLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPAL 113 (352)
Q Consensus 35 ~~~~~~~~~~PGp~~~pi~G~l~~~-~~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~ 113 (352)
++++.+ +||||++ ++++ .++++..+.+|+++|||||++++|+.++|+++||+++++||.+++..|++|+..
T Consensus 24 ~~~~~~--lPPGP~~------l~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~~f~~r~~~ 95 (496)
T 3qz1_A 24 KLRNLH--LPPLVPG------FLHLLQPNLPIHLLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVDFAGRPQI 95 (496)
T ss_dssp -----C--CCCBCSC------SCTTSSSCHHHHHHHGGGTSCSEEEECSSSSCEEEECSTTHHHHTTTTSCSTTCBCCCC
T ss_pred hccCCC--CCcCCcc------ccccCCCcchHHHHHHHHHhCCEEEEEeCCcCEEEECCHHHHHHHHHhCcHhhCCCCCc
Confidence 345566 9999987 5555 567899999999999999999999999999999999999999988889888765
Q ss_pred ccccccccCCceeEecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHH
Q 048567 114 LAGKHANFNYLVMATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLYMF 193 (352)
Q Consensus 114 ~~~~~~~~~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~~~ 193 (352)
........++.++++.++|+.|+++||++. +.|+++.++.+.+.++++++.+++.|.+ ..++++|+.+.+..+
T Consensus 96 ~~~~~~~~~~~~l~~~~~g~~w~~~Rr~~~-~~f~~~~~~~~~~~i~~~~~~l~~~l~~------~~~~~vd~~~~~~~~ 168 (496)
T 3qz1_A 96 PSYKLVSQRCQDISLGDYSLLWKAHKKLTR-SALLLGTRSSMEPWVDQLTQEFCERMRV------QAGAPVTIQKEFSLL 168 (496)
T ss_dssp TTTTTSCTTCCCSSSSCCSHHHHHHHHHHH-HHHHC--CCCHHHHHHHHHHHHHHHHHT------TCSCCCHHHHHHTHH
T ss_pred chHHHhcCCCCceEECCCCHHHHHHHHHHH-HHHhhccHhhHHHHHHHHHHHHHHHHHh------cCCCccCHHHHHHHH
Confidence 433332223336766666999999999986 7888777888999999999999999975 246789999999999
Q ss_pred HHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhcC--CCcccccccccccCccchHHHHHHHHHHHHHHHHHHH
Q 048567 194 NLATMSRMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGI--LDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVL 271 (352)
Q Consensus 194 t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i 271 (352)
++|+|+.++||. ..+ .....+.+.+..++..... ..+.+.+|++++++. +..+++.+..+.+.+++.+++
T Consensus 169 ~~dvi~~~~fG~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~lp~-~~~~~~~~~~~~~~~~~~~~i 240 (496)
T 3qz1_A 169 TCSIICYLTFGN---KED----TLVHAFHDCVQDLMKTWDHWSIQILDMVPFLRFFPN-PGLWRLKQAIENRDHMVEKQL 240 (496)
T ss_dssp HHHHTTTTSTTC---CCH----HHHHHHHHHHHTTTTTTSSHHHHHHHHCGGGCCCCC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC---CCC----hHHHHHHHHHHHHHHHhccchhHHHHhHHHHHhCCh-HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 111 2334444444443322221 123456788877632 345677788888999999999
Q ss_pred HHHHHHhccccCCCCCCccHHHHHHhccCCC--CcC-CCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHH
Q 048567 272 DEHERHAKRKSFNEHGTKDMVDVLLQLADDP--TLE-VKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQK 348 (352)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~d~l~~lL~~~~~~--~~~-~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~k 348 (352)
+++++.. +...+.|+++.|++...+. +.+ ..++++++.+++.++++||+||||++|+|++++|++||++|+|
T Consensus 241 ~~~~~~~-----~~~~~~d~l~~ll~~~~~~~~~~~~~~l~~~~i~~~~~~l~~AG~dTta~~l~~~l~~L~~~P~~~~k 315 (496)
T 3qz1_A 241 RRHKESM-----VAGQWRDMTDYMLQGVGRQRVEEGPGQLLEGHVHMSVVDLFIGGTETTASTLSWAVAFLLHHPEIQRR 315 (496)
T ss_dssp HHHHHSC-----CSSCCSSSHHHHTTSSTTCCC-----CCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHhhc-----cCCCccchHHHHHHHHHhccccCCcccccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCHHHHHH
Confidence 8887654 2345689999999876432 111 2689999999999999999999999999999999999999999
Q ss_pred hhhC
Q 048567 349 ATEE 352 (352)
Q Consensus 349 l~~E 352 (352)
+|+|
T Consensus 316 l~~E 319 (496)
T 3qz1_A 316 LQEE 319 (496)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9987
No 5
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.1e-42 Score=334.60 Aligned_cols=294 Identities=20% Similarity=0.360 Sum_probs=227.3
Q ss_pred CCCCCCCCCcccccccCCCCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCcccccccccccC
Q 048567 43 PPPGPKPWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPALLAGKHANFN 122 (352)
Q Consensus 43 ~~PGp~~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~~~~~~~~~ 122 (352)
.+|||+++|++||++++.++++..+.+|+++|||||++++|+.++++++||+++++||.+++..|++|+.......+ .+
T Consensus 17 ~~PgP~~~p~~G~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~i~~il~~~~~~f~~r~~~~~~~~~-~~ 95 (495)
T 2hi4_A 17 SPPEPWGWPLLGHVLTLGKNPHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQALVRQGDDFKGRPDLYTSTLI-TD 95 (495)
T ss_dssp CCCCCCCBTTTBTHHHHTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTGGGSCBCCCCHHHHTS-TT
T ss_pred CCCCCCCCcceeeHHhcCccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhcchhhCCCCCcHHHHHh-cC
Confidence 34999999999999988667888899999999999999999999999999999999999887778887754322222 23
Q ss_pred CceeEec-CCChhHHHhhhhhhhhc---CChhhh---h---hhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHH
Q 048567 123 YLVMATA-PYGPHWRQTRKTFKTQI---LSPKRL---V---QSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLYM 192 (352)
Q Consensus 123 g~~~~~~-~~g~~Wk~~Rr~~~~~~---fs~~~l---~---~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~~ 192 (352)
+.+++++ ++|+.|+++||++. +. |+..++ + .+.+.+.++++.+++.|.+. ..+++++|+.+.+..
T Consensus 96 ~~~l~~~~~~g~~w~~~Rr~~~-~~f~~~s~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~----~~~~~~~d~~~~~~~ 170 (495)
T 2hi4_A 96 GQSLTFSTDSGPVWAARRRLAQ-NALNTFSIASDPASSSSCYLEEHVSKEAKALISRLQEL----MAGPGHFDPYNQVVV 170 (495)
T ss_dssp SCCTTTSSCCSHHHHHHHHHHH-HHHHHTTTSBCSSCSSCBHHHHHHHHHHHHHHHHHHHH----HHTTSCBCHHHHHHH
T ss_pred CCCEEEcCCCChHHHHHHHHHH-HHHHHhccCcccccchhhhHHHHHHHHHHHHHHHHHHh----ccCCCccchHHHHHH
Confidence 4566665 46999999999986 55 444433 2 68999999999999999763 124568999999999
Q ss_pred HHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHH
Q 048567 193 FNLATMSRMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLD 272 (352)
Q Consensus 193 ~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~ 272 (352)
+++|+|+.++||.+++..+ .....+.+....+..........+++|++++++ .+..+++.+..+.+.+++.++|+
T Consensus 171 ~~~dvi~~~~fG~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~lp-~~~~~~~~~~~~~~~~~~~~~i~ 245 (495)
T 2hi4_A 171 SVANVIGAMCFGQHFPESS----DEMLSLVKNTHEFVETASSGNPLDFFPILRYLP-NPALQRFKAFNQRFLWFLQKTVQ 245 (495)
T ss_dssp HHHHHHHHHHHGGGSCTTC----HHHHHHHTTTHHHHTTSSTTCGGGTCGGGGGSC-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCC----HHHHHHHHHHHHHHHhcccchHHHHhHHHHhcC-chHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999886432 233344444444544332223456788887663 23346677788888999999998
Q ss_pred HHHHHhccccCCCCCCccHHHHHHhccC-C-CCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhh
Q 048567 273 EHERHAKRKSFNEHGTKDMVDVLLQLAD-D-PTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKAT 350 (352)
Q Consensus 273 ~~~~~~~~~~~~~~~~~d~l~~lL~~~~-~-~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~ 350 (352)
++++.. +.....|+++.|++... . .+.+..+++++|.+++.++++||+|||+++|+|++++|++||++|+|++
T Consensus 246 ~r~~~~-----~~~~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~~~l~~AG~dTta~~l~~~l~~L~~~P~~~~kl~ 320 (495)
T 2hi4_A 246 EHYQDF-----DKNSVRDITGALFKHSKKGPRASGNLIPQEKIVNLVNDIFGAGFDTVTTAISWSLMYLVTKPEIQRKIQ 320 (495)
T ss_dssp HHHHTC-----CTTCCCSHHHHHHHHHHHCCEETTEECCTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHhh-----cccccccHHHHHHHHhhhccCccccCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCHHHHHHHH
Confidence 887653 22345799999996421 1 1113358999999999999999999999999999999999999999999
Q ss_pred hC
Q 048567 351 EE 352 (352)
Q Consensus 351 ~E 352 (352)
+|
T Consensus 321 ~E 322 (495)
T 2hi4_A 321 KE 322 (495)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 6
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*
Probab=100.00 E-value=1.8e-42 Score=335.44 Aligned_cols=289 Identities=18% Similarity=0.181 Sum_probs=218.7
Q ss_pred CcCCCCCCCCCCCCCcccccccCC----CCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCcc
Q 048567 37 NKLNLLPPPGPKPWPLIGNLNLIG----QLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPA 112 (352)
Q Consensus 37 ~~~~~~~~PGp~~~pi~G~l~~~~----~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~ 112 (352)
++++ .||||+++|++||++++. ...+..+.+|+++|||||++++|+.++|+++||++++++|.++ .|++|+.
T Consensus 42 ~~~~--~pPGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~il~~~--~~~~r~~ 117 (503)
T 3s79_A 42 EGTS--SIPGPGYCMGIGPLISHGRFLWMGIGSACNYYNRVYGEFMRVWISGEETLIISKSSSMFHIMKHN--HYSSRFG 117 (503)
T ss_dssp ---C--CCCSCCCCSSSHHHHHHHHHHHHCHHHHHHHHHHHSCSEEEEESSSSEEEEECCHHHHHHHHHSG--GGCCCCC
T ss_pred hccC--CCCCCCCCceeeehhccccccccchhHHHHHHHHHhCCeEEEEeCCccEEEECCHHHHHHHHhcC--CCCCcch
Confidence 3456 799999999999999873 2345678899999999999999999999999999999999643 5777764
Q ss_pred cccc-cccccCCceeEecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHH
Q 048567 113 LLAG-KHANFNYLVMATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLY 191 (352)
Q Consensus 113 ~~~~-~~~~~~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~ 191 (352)
.... ......+.|+++..+|+.|+++||++. +.|+...++++.+.+.+++.++++.|.+. ...++++|+.+.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~g~~w~~~Rr~~~-~~f~~~~l~~~~~~~~~~~~~~l~~l~~~----~~~~~~vdl~~~~~ 192 (503)
T 3s79_A 118 SKLGLQCIGMHEKGIIFNNNPELWKTTRPFFM-KALSGPGLVRMVTVCAESLKTHLDRLEEV----TNESGYVDVLTLLR 192 (503)
T ss_dssp CHHHHHHHTCTTSSSTTCCCHHHHHHHHHHHH-HHTSTHHHHHHHHHHHHHHHHHHTTGGGT----BCTTSCBCHHHHHH
T ss_pred hhhhhhhhccCCCceeeCCCccHHHHHHHhhh-HhhChHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCeEcHHHHHH
Confidence 3221 222234567777777999999999996 88999999999999999999999888653 24567899999999
Q ss_pred HHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHH
Q 048567 192 MFNLATMSRMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVL 271 (352)
Q Consensus 192 ~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i 271 (352)
.+++|+++.++||.+++..+ ....+......+...... ...++.+.++ .+++.+..+.+.+++..+|
T Consensus 193 ~~~~~vi~~~~fG~~~~~~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i 259 (503)
T 3s79_A 193 RVMLDTSNTLFLRIPLDESA-----IVVKIQGYFDAWQALLIK---PDIFFKISWL-----YKKYEKSVKDLKDAIEVLI 259 (503)
T ss_dssp HHHHHHHHHHHTCCCCCHHH-----HHHHHHHHHHHHHHHTTC---CHHHHHSGGG-----THHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccCchh-----HHHHHHHHHHHHHHHhcC---cHHHhhcchh-----HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999875321 222333333322221111 1111112222 3566777888899999999
Q ss_pred HHHHHHhccccCCCCCCccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhh
Q 048567 272 DEHERHAKRKSFNEHGTKDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATE 351 (352)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~ 351 (352)
+++++.. ..+.......|+++.|++..+ +..++++++.+++.++++||+|||+++++|++++|++||++|+|+|+
T Consensus 260 ~~~~~~~-~~~~~~~~~~d~l~~ll~~~~----~~~l~~~~i~~~~~~~~~AG~~Tta~~l~~~l~~L~~~P~~~~kl~~ 334 (503)
T 3s79_A 260 AEKRRRI-STEEKLEECMDFATELILAEK----RGDLTRENVNQCILEMLIAAPDTMSVSLFFMLFLIAKHPNVEEAIIK 334 (503)
T ss_dssp HHHHHHH-HTCTTTTTTCCHHHHHHHHHH----TTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHh-hcccccchHHHHHHHHHHhcc----cCCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 9887765 211112234699999998653 23699999999999999999999999999999999999999999998
Q ss_pred C
Q 048567 352 E 352 (352)
Q Consensus 352 E 352 (352)
|
T Consensus 335 E 335 (503)
T 3s79_A 335 E 335 (503)
T ss_dssp H
T ss_pred H
Confidence 7
No 7
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=100.00 E-value=1.5e-41 Score=326.60 Aligned_cols=298 Identities=21% Similarity=0.308 Sum_probs=218.4
Q ss_pred cCcCCCCCCCCCCCCCcccccccC-CCCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCcccc
Q 048567 36 RNKLNLLPPPGPKPWPLIGNLNLI-GQLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPALL 114 (352)
Q Consensus 36 ~~~~~~~~~PGp~~~pi~G~l~~~-~~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~ 114 (352)
.++++ +||||+++|++||++++ .++.+..+.+|++||||||++++|+.++|+|+||+++++||.+++..|++|+...
T Consensus 6 ss~~k--LPPGP~~lP~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~i~~vl~~~~~~f~~r~~~~ 83 (479)
T 3tbg_A 6 SSKGK--LPPGPLPLPGLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVP 83 (479)
T ss_dssp ---CC--CCCCSCCBTTTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEETTEEEEEEEHHHHHHHHHTTTGGGSCBCCCCG
T ss_pred CCCCC--CCCCCCCcCcccchHhhcCCCHHHHHHHHHHHhCCEEEEEECCeeEEEECCHHHHHHHHHhCChhhcCCCchH
Confidence 35567 99999999999999998 5678889999999999999999999999999999999999999998999998765
Q ss_pred ccccccc--CCceeEecCCChhHHHhhhhhhhhcCChhhhh--hhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHH
Q 048567 115 AGKHANF--NYLVMATAPYGPHWRQTRKTFKTQILSPKRLV--QSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRL 190 (352)
Q Consensus 115 ~~~~~~~--~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~--~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~ 190 (352)
....+.. .+.++++..+|+.|+++|+.+. +.|+...+. .+.+.+......+...+.. ..++++|+.+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~ 156 (479)
T 3tbg_A 84 ITQILGFGPRSQGVFLARYGPAWREQRRFSV-STLRNLGLGKKSLEQWVTEEAACLCAAFAN------HSGRPFRPNGLL 156 (479)
T ss_dssp GGGGGTCBTTBCCSTTCCSSHHHHHHHHHHH-HHHHHTTSTTCHHHHHHHHHHHHHHHHHHT------TTTCCBCTHHHH
T ss_pred HHHHhccCCCCCceeeCCCCHHHHHHHHHHH-HHhcchhhhHHHHHHHHHHHHHHHHHHHHh------ccCCcccHHHHH
Confidence 5544432 2456677778999999999986 667665553 3456666666666666653 356789999999
Q ss_pred HHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhcCCC--cccccccccccCccchHHHHHHHHHHHHHHHH
Q 048567 191 YMFNLATMSRMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGILD--IGDAIPWLAFLDLQGNVKRMKAVKKKADKFYE 268 (352)
Q Consensus 191 ~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~ 268 (352)
..+++|+++.++||.+++..+. ....+............... ....+|+..++ ....++.....+...+++.
T Consensus 157 ~~~~~~~~~~~~fg~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 230 (479)
T 3tbg_A 157 DKAVSNVIASLTCGRRFEYDDP----RFLRLLDLAQEGLKEESGFLREVLNAVPVLLHI--PALAGKVLRFQKAFLTQLD 230 (479)
T ss_dssp HHHHHHHHHHHHHSCCCCTTCH----HHHHHHHHHHHHHHTTSSHHHHHHHHSGGGGGS--HHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCcccccch----hhhhhhhhhhhhhhhhhhhhhhhhcccchhccc--hhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999876542 23333333333322221110 11123333332 2233445555666677777
Q ss_pred HHHHHHHHHhccccCCCCCCccHHHHHHhccC--CCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHH
Q 048567 269 HVLDEHERHAKRKSFNEHGTKDMVDVLLQLAD--DPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVI 346 (352)
Q Consensus 269 ~~i~~~~~~~~~~~~~~~~~~d~l~~lL~~~~--~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq 346 (352)
+.++++.+.. . ......|+++.++.... ..+.+..++++++.+++.++++||+||||++|+|++|+|++||++|
T Consensus 231 ~~~~~~~~~~-~---~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~~q 306 (479)
T 3tbg_A 231 ELLTEHRMTW-D---PAQPPRDLTEAFLAEMEKAKGNPESSFNDENLRIVVADLFSAGMVTTSTTLAWGLLLMILHPDVQ 306 (479)
T ss_dssp HHHHHHHHHC-C---TTSCCCSHHHHHHHHHHHTTTCTTCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHhh-h---cccccchhhhhhhhhhhhcccCCccchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCHHHH
Confidence 7777766554 1 23456777777665432 1122457999999999999999999999999999999999999999
Q ss_pred HHhhhC
Q 048567 347 QKATEE 352 (352)
Q Consensus 347 ~kl~~E 352 (352)
+|||+|
T Consensus 307 ~kl~~E 312 (479)
T 3tbg_A 307 RRVQQE 312 (479)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999997
No 8
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens} SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Probab=100.00 E-value=4.8e-42 Score=331.02 Aligned_cols=296 Identities=20% Similarity=0.324 Sum_probs=227.9
Q ss_pred CcCCCCCCCCCCCCCcccccccCC-CC--CcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCccc
Q 048567 37 NKLNLLPPPGPKPWPLIGNLNLIG-QL--PHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPAL 113 (352)
Q Consensus 37 ~~~~~~~~PGp~~~pi~G~l~~~~-~~--~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~ 113 (352)
++.+ +||||+++|++||++++. .. ++..+.+|+++|||||++++|+.++++++||+++++||.+++..|++|+..
T Consensus 9 ~~~~--lpPgP~~~p~~G~~~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~vl~~~~~~f~~~~~~ 86 (481)
T 3czh_A 9 RPMG--FPPGPPGLPFIGNIYSLAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCL 86 (481)
T ss_dssp ---C--CCCCCCCBTTTBHHHHHHHCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEEESHHHHHHHHTTTTTTTCBCCCC
T ss_pred CCCC--CCCCCCCCcccccHhhcCcccCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhhchHhhCCCCCc
Confidence 4456 899999999999998873 33 788899999999999999999999999999999999999887788887643
Q ss_pred ccccccccCCceeEecCCChhHHHhhhhhhhhcCChhhh--hhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHH
Q 048567 114 LAGKHANFNYLVMATAPYGPHWRQTRKTFKTQILSPKRL--VQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLY 191 (352)
Q Consensus 114 ~~~~~~~~~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l--~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~ 191 (352)
.....+. ++.++++..+|+.|+++||++. +.|++.++ ..+.+.++++++.+++.|.+. +++++|+.+.+.
T Consensus 87 ~~~~~~~-~~~~~~~~~~g~~w~~~R~~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~------~~~~~d~~~~~~ 158 (481)
T 3czh_A 87 PLFMKMT-KMGGLLNSRYGRGWVDHRRLAV-NSFRYFGYGQKSFESKILEETKFFNDAIETY------KGRPFDFKQLIT 158 (481)
T ss_dssp HHHHHHH-TTCSSTTCCSSHHHHHHHHHHH-HHHHHTTTTSTTHHHHHHHHHHHHHHHHHTT------TTCCBCCHHHHH
T ss_pred HHHHhhc-CCCCeEeCCCChHHHHHHHHHH-HHHHHhcCChHHHHHHHHHHHHHHHHHHHHc------CCCCcCHHHHHH
Confidence 2222221 2335555567999999999986 77876543 678999999999999999752 456899999999
Q ss_pred HHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhcCCC--cccccccccccCccchHHHHHHHHHHHHHHHHH
Q 048567 192 MFNLATMSRMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGILD--IGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEH 269 (352)
Q Consensus 192 ~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~ 269 (352)
.+++|+|+.++||.+++..+ .....+.+.+..++....... +.+.+|++++++ .+..+++.+..+.+.+++.+
T Consensus 159 ~~~~~vi~~~~fG~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~lp-~~~~~~~~~~~~~~~~~~~~ 233 (481)
T 3czh_A 159 NAVSNITNLIIFGERFTYED----TDFQHMIELFSENVELAASASVFLYNAFPWIGILP-FGKHQQLFRNAAVVYDFLSR 233 (481)
T ss_dssp HHHHHHHHHHHHSSCCCTTC----HHHHHHHHHHHHHHHHTTSHHHHHHHHCGGGGGCS-SSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCC----HHHHHHHHHHHHHHhhhccchhHHhhhhHHHHhCC-chHHHHHHHHHHHHHHHHHH
Confidence 99999999999999876432 234455555555554322211 345678876652 13356677778888899999
Q ss_pred HHHHHHHHhccccCCCCCCccHHHHHHhccCC--CCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHH
Q 048567 270 VLDEHERHAKRKSFNEHGTKDMVDVLLQLADD--PTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQ 347 (352)
Q Consensus 270 ~i~~~~~~~~~~~~~~~~~~d~l~~lL~~~~~--~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~ 347 (352)
+|+++++.. +...+.|+++.||+...+ .+++..+++++|.+++.++++||+|||+++|+|++++|++||++|+
T Consensus 234 ~i~~r~~~~-----~~~~~~d~l~~ll~~~~~~~~~~~~~l~~~ei~~~~~~l~~AG~dTta~~l~~~l~~L~~~P~~~~ 308 (481)
T 3czh_A 234 LIEKASVNR-----KPQLPQHFVDAYLDEMDQGKNDPSSTFSKENLIFSVGELIIAGTETTTNVLRWAILFMALYPNIQG 308 (481)
T ss_dssp HHHHHHTTC-----CTTCCSSHHHHHHHHHHHTTTCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHhc-----CCCchHHHHHHHHHHHHhcccCccccccHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhChHHHH
Confidence 998877543 223467999999976421 1113469999999999999999999999999999999999999999
Q ss_pred HhhhC
Q 048567 348 KATEE 352 (352)
Q Consensus 348 kl~~E 352 (352)
|+|+|
T Consensus 309 kl~~E 313 (481)
T 3czh_A 309 QVQKE 313 (481)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99987
No 9
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Probab=100.00 E-value=8.6e-42 Score=328.72 Aligned_cols=290 Identities=19% Similarity=0.267 Sum_probs=226.1
Q ss_pred CCCCCCCCCcccccccC-CCCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCccccccccccc
Q 048567 43 PPPGPKPWPLIGNLNLI-GQLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPALLAGKHANF 121 (352)
Q Consensus 43 ~~PGp~~~pi~G~l~~~-~~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~~~~~~~~ 121 (352)
+||||+++|++||++++ .++++..+.+|+++|||||++++|+.++++++||+++++||.++...|++|+.........
T Consensus 11 ~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~~~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~~~~- 89 (476)
T 2fdv_A 11 LPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEEFSGRGEQATFDWVF- 89 (476)
T ss_dssp CCCCCCCBTTTBTGGGCCTTBHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCCHHHHHHH-
T ss_pred CCCCCCCCcccccHhhcCCcchHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcChHhhCCCCCcHHHhhhc-
Confidence 79999999999999998 5677889999999999999999999999999999999999988777788766432222221
Q ss_pred CCceeEecCCChhHHHhhhhhhhhcCChhhh--hhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHHHHHHH
Q 048567 122 NYLVMATAPYGPHWRQTRKTFKTQILSPKRL--VQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLYMFNLATMS 199 (352)
Q Consensus 122 ~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l--~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~~~t~~vi~ 199 (352)
.+.++++. +|+.|+++||++. +.|++.++ +.+.+.+.++++.+++.|.+. .++++|+.+.+..+++|+|+
T Consensus 90 ~~~~l~~~-~g~~~~~~Rr~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~------~~~~vd~~~~~~~~~~~vi~ 161 (476)
T 2fdv_A 90 KGYGVVFS-NGERAKQLRRFSI-ATLRDFGVGKRGIEERIQEEAGFLIDALRGT------GGANIDPTFFLSRTVSNVIS 161 (476)
T ss_dssp TTCSSSSC-CHHHHHHHHHHHH-HHHHHTTTTSHHHHHHHHHHHHHHHHHHHHT------TTCCBCCHHHHHHHHHHHHH
T ss_pred CCCCeEec-CchHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHhc------CCCccChHHHHHHHHHHHHH
Confidence 24556555 5999999999985 78887766 789999999999999999752 45689999999999999999
Q ss_pred HHHHhcccccccccchhhHHHHHHHHHHHHHhhcCC--Cccccccc-ccccCccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048567 200 RMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGIL--DIGDAIPW-LAFLDLQGNVKRMKAVKKKADKFYEHVLDEHER 276 (352)
Q Consensus 200 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~P~-l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 276 (352)
.++||.+++..+ .....+.+.+..++...... .+.+.+|+ ++++ ++..++..+..+.+.+++.++|+++++
T Consensus 162 ~~~fG~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l--~~~~~~~~~~~~~~~~~~~~~i~~r~~ 235 (476)
T 2fdv_A 162 SIVFGDRFDYKD----KEFLSLLRMMLGIFQFTSTSTGQLYEMFSSVMKHL--PGPQQQAFQLLQGLEDFIAKKVEHNQR 235 (476)
T ss_dssp HHHHSSCCCTTC----HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCcCCCCC----HHHHHHHHHHHHHHHhhcccccchhhhhhhHHHhc--CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999887433 23344544455544322211 12345776 4554 344466677788888999999988765
Q ss_pred HhccccCCCCCCccHHHHHHhccCC--CCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 277 HAKRKSFNEHGTKDMVDVLLQLADD--PTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 277 ~~~~~~~~~~~~~d~l~~lL~~~~~--~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
.. +...+.|+++.|+....+ ...+..+++++|.+++.++++||+|||+++|+|++|+|++||++|+|+|+|
T Consensus 236 ~~-----~~~~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~~~~~l~~E 308 (476)
T 2fdv_A 236 TL-----DPNSPRDFIDSFLIRMQEEEKNPNTEFYLKNLVMTTLNLFIGGTETVSTTLRYGFLLLMKHPEVEAKVHEE 308 (476)
T ss_dssp TC-----CTTSCCSHHHHHHHHHHHTTTCTTCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hc-----CCCCCccHHHHHHHHHHhcccCccccccHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 43 223467999999976421 111346899999999999999999999999999999999999999999987
No 10
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Probab=100.00 E-value=1e-41 Score=328.16 Aligned_cols=290 Identities=19% Similarity=0.292 Sum_probs=221.9
Q ss_pred CCCCCCCCCcccccccC-CCCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCccccccccccc
Q 048567 43 PPPGPKPWPLIGNLNLI-GQLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPALLAGKHANF 121 (352)
Q Consensus 43 ~~PGp~~~pi~G~l~~~-~~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~~~~~~~~ 121 (352)
+||||+++|++||++++ .++++..+.+|+++|||||++++|+.++|+++||+++++||.+++..|++|+.........
T Consensus 11 ~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~~~~- 89 (476)
T 1po5_A 11 LPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVDPIF- 89 (476)
T ss_dssp CCCCSCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCGGGGCSCC-
T ss_pred CCcCCCCCCccccHHhccCCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCCcHHHHhhc-
Confidence 79999999999999998 6678889999999999999999999999999999999999988777788776433222221
Q ss_pred CCceeEecCCChhHHHhhhhhhhhcCChh--hhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHHHHHHH
Q 048567 122 NYLVMATAPYGPHWRQTRKTFKTQILSPK--RLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLYMFNLATMS 199 (352)
Q Consensus 122 ~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~--~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~~~t~~vi~ 199 (352)
.+.+++++ +|+.|+++||++. +.|++. +++.+.+.+.++++.+++.|.+. .++++|+.+.+..+++|+|+
T Consensus 90 ~~~~l~~~-~g~~w~~~Rr~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~------~~~~~d~~~~~~~~~~~vi~ 161 (476)
T 1po5_A 90 QGYGVIFA-NGERWRALRRFSL-ATMRDFGMGKRSVEERIQEEARCLVEELRKS------KGALLDNTLLFHSITSNIIC 161 (476)
T ss_dssp SSCCCCCS-SHHHHHHHHHHHH-HHHHHSCCCHHHHHHHHHHHHHHHHHHHHHT------TTCCBCCHHHHHHHHHHHHH
T ss_pred CCCceEec-CCcHHHHHHHHHH-HHHHHhCCChhHHHHHHHHHHHHHHHHHHhc------CCCccCHHHHHHHHHHHHHH
Confidence 34566555 6999999999985 678766 45778999999999999999762 35689999999999999999
Q ss_pred HHHHhcccccccccchhhHHHHHHHHHHHHHhhcCC--Cccccccc-ccccCccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048567 200 RMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGIL--DIGDAIPW-LAFLDLQGNVKRMKAVKKKADKFYEHVLDEHER 276 (352)
Q Consensus 200 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~P~-l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 276 (352)
.++||.+++..+ .....+...+..++...... ...+.+|+ ++++ ++..++..+..+.+.+++..+|+++++
T Consensus 162 ~~~fG~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~l--p~~~~~~~~~~~~~~~~~~~~i~~r~~ 235 (476)
T 1po5_A 162 SIVFGKRFDYKD----PVFLRLLDLFFQSFSLISSFSSQVFELFSGFLKHF--PGTHRQIYRNLQEINTFIGQSVEKHRA 235 (476)
T ss_dssp HHHHSSCCCTTC----HHHHHHHHHHHHHTTTCCTTHHHHHHHTHHHHHTS--SCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCCC----HHHHHHHHHHHHHHhhhcchhhHHHHhhhHHHHhc--CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999886432 12333333333332111111 11235676 4444 333456677778888999999988765
Q ss_pred HhccccCCCCCCccHHHHHHhccCC--CCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 277 HAKRKSFNEHGTKDMVDVLLQLADD--PTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 277 ~~~~~~~~~~~~~d~l~~lL~~~~~--~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
.. +...+.|+++.||....+ .+++..+++++|.+++.++++||+|||+++|+|++++|++||++|+|+|+|
T Consensus 236 ~~-----~~~~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~~~~~l~~E 308 (476)
T 1po5_A 236 TL-----DPSNPRDFIDVYLLRMEKDKSDPSSEFHHQNLILTVLSLFFAGTETTSTTLRYGFLLMLKYPHVTERVQKE 308 (476)
T ss_dssp TC-----CTTSCCSHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hc-----CCCCcccHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 43 223457999999864321 111345899999999999999999999999999999999999999999987
No 11
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=100.00 E-value=1.2e-41 Score=327.53 Aligned_cols=294 Identities=19% Similarity=0.285 Sum_probs=223.5
Q ss_pred cCcCCCCCCCCCCCCCcccccccC--C---CCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCC
Q 048567 36 RNKLNLLPPPGPKPWPLIGNLNLI--G---QLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASR 110 (352)
Q Consensus 36 ~~~~~~~~~PGp~~~pi~G~l~~~--~---~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r 110 (352)
.++.+ .+|||+++|++||++++ . +.++..+.+|+++|||||++++|+.++|+++||+++++|+.++ ..|.+|
T Consensus 20 ~~pl~--~~PGP~~~p~iG~~~~~~~~~~~~~~~~~~~~l~~~YG~i~~~~~g~~~~vvv~dp~~~~~il~~~-~~~~~r 96 (482)
T 3k9v_A 20 TRNVT--DLPGPTNWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEALYRTE-SAHPQR 96 (482)
T ss_dssp CEEGG--GCCCSCCCTTTBTHHHHHHTTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTC-CSSCCC
T ss_pred cCCCC--CCCCCCCCCccccHHHHhccCCcccHHHHHHHHHHHcCCEEEEccCCCCEEEEcCHHHHHHHHHhc-CCCCCC
Confidence 35566 79999999999999887 1 2467889999999999999999999999999999999999885 468877
Q ss_pred cccccc---cccccCCceeEecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchH
Q 048567 111 PALLAG---KHANFNYLVMATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLK 187 (352)
Q Consensus 111 ~~~~~~---~~~~~~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~ 187 (352)
+..... ......+.|++ ..+|+.|+++||.+...+++++.++.+.+.++++++.+++.|.+.. ..+++++|+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~-~~~g~~w~~~Rr~~~~~f~~~~~~~~~~~~i~~~~~~l~~~l~~~~---~~~g~~vd~~ 172 (482)
T 3k9v_A 97 LEIKPWKAYRDHRNEAYGLM-ILEGQEWQRVRSAFQKKLMKPVEIMKLDKKINEVLADFLERMDELC---DERGRIPDLY 172 (482)
T ss_dssp CCCHHHHHHHHHHTCCCCTT-TCCHHHHHHHHHHHHHHHTCHHHHGGGHHHHHHHHHHHHHHHHHHC---CTTSCCTTHH
T ss_pred CCchHHHHHHHhcCCCCCce-eCCCchHHHHHHHhhHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCCCCHH
Confidence 643211 11112344554 4569999999999974345888899999999999999999998642 1246689999
Q ss_pred HHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhcCCCcccccc--cccccCccchHHHHHHHHHHHHH
Q 048567 188 DRLYMFNLATMSRMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIP--WLAFLDLQGNVKRMKAVKKKADK 265 (352)
Q Consensus 188 ~~~~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P--~l~~l~~~~~~~~~~~~~~~~~~ 265 (352)
+.+..+++|+|+.++||.+++..+.........+.+.+..++..... ...+| ++++++ ....++..+..+.+.+
T Consensus 173 ~~~~~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~~~~~l~-~~~~~~~~~~~~~~~~ 248 (482)
T 3k9v_A 173 SELNKWSFESICLVLYEKRFGLLQKETEEEALTFITAIKTMMSTFGK---MMVTPVELHKRLN-TKVWQAHTLAWDTIFK 248 (482)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCSSSTTSTTSSHHHHHHHHHHHTTGGG---GSSSCHHHHHHHT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccccCCCCCCcchHHHHHHHHHHHHHHHHHH---HHhhhHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence 99999999999999999998643311112334566666655443221 12233 233332 2234556666677788
Q ss_pred HHHHHHHHHHHHhccccCCCCCCccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHH
Q 048567 266 FYEHVLDEHERHAKRKSFNEHGTKDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRV 345 (352)
Q Consensus 266 ~~~~~i~~~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pev 345 (352)
++.++|+++++.. ......|+++.++.. ..++++++.+++.++++||+||||+||+|++++|++||++
T Consensus 249 ~~~~~i~~r~~~~-----~~~~~~d~l~~ll~~-------~~l~~~ei~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~~ 316 (482)
T 3k9v_A 249 SVKPCIDNRLQRY-----SQQPGADFLCDIYQQ-------DHLSKKELYAAVTELQLAAVETTANSLMWILYNLSRNPQA 316 (482)
T ss_dssp HHHHHHHHHHHHT-----TTCTTSCHHHHHHHH-------TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHh-----ccCCchHHHHHHHhc-------cCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCHHH
Confidence 8888888887654 223457899888874 2489999999999999999999999999999999999999
Q ss_pred HHHhhhC
Q 048567 346 IQKATEE 352 (352)
Q Consensus 346 q~kl~~E 352 (352)
|+|+|+|
T Consensus 317 q~kl~~E 323 (482)
T 3k9v_A 317 QRRLLQE 323 (482)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999997
No 12
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Probab=100.00 E-value=2.3e-41 Score=325.82 Aligned_cols=290 Identities=23% Similarity=0.316 Sum_probs=214.9
Q ss_pred CCCCCCCCCcccccccC-CCCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCccccccccccc
Q 048567 43 PPPGPKPWPLIGNLNLI-GQLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPALLAGKHANF 121 (352)
Q Consensus 43 ~~PGp~~~pi~G~l~~~-~~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~~~~~~~~ 121 (352)
+||||+++|++||++++ .++++..+.+|+++|||||++++|+.++|+++||+++++||.+++..|++|+........ .
T Consensus 12 ~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~il~~~~~~f~~~~~~~~~~~~-~ 90 (477)
T 1r9o_A 12 LPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGIFPLAERA-N 90 (477)
T ss_dssp CCCCSSSCC-----CCBCHHHHHHHHHHHHHHHCSEEEEESSSCEEEEECSHHHHHHHHTTTTTTTCEECCCSCCCTT-T
T ss_pred CCCCCCCCceeccHhhcCCCChHHHHHHHHHHhCCEEEEEECCCcEEEECCHHHHHHHHhcccHhhCCCCcchhhhhc-c
Confidence 79999999999999988 456788899999999999999999989999999999999998877778877643222222 1
Q ss_pred CCceeEecCCChhHHHhhhhhhhhcCChh--hhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHHHHHHH
Q 048567 122 NYLVMATAPYGPHWRQTRKTFKTQILSPK--RLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLYMFNLATMS 199 (352)
Q Consensus 122 ~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~--~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~~~t~~vi~ 199 (352)
.+.++++. +|+.|+++||++. +.|++. .++.+.+.+.++++.+++.|.+. .++++|+.+.+..+++|+|+
T Consensus 91 ~~~~l~~~-~g~~w~~~Rr~~~-~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~------~~~~vd~~~~~~~~~~~vi~ 162 (477)
T 1r9o_A 91 RGFGIVFS-NGKKWKEIRRFSL-MTLRNFGMGKRSIEDRVQEEARCLVEELRKT------KASPCDPTFILGCAPCNVIC 162 (477)
T ss_dssp CTTSSTTC-CHHHHHHHHHHHH-HHHTTSSSCSSCHHHHHHHHHHHHHHHHHTT------TTSCBCTHHHHHHHHHHHHH
T ss_pred CCCceEec-CChHHHHHHHHHH-HHHHHhCCChHHHHHHHHHHHHHHHHHHHhc------CCCccChHHHHHHHHHHHHH
Confidence 34455544 6999999999985 678776 45778999999999999999752 35689999999999999999
Q ss_pred HHHHhcccccccccchhhHHHHHHHHHHHHHhhcCC--Cccccccc-ccccCccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048567 200 RMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGIL--DIGDAIPW-LAFLDLQGNVKRMKAVKKKADKFYEHVLDEHER 276 (352)
Q Consensus 200 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~P~-l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 276 (352)
.++||.+++..+ .....+...+...+...... .+.+.+|+ ++++ ++..++..+..+.+.+++..+|+++++
T Consensus 163 ~~~fG~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l--p~~~~~~~~~~~~~~~~~~~~i~~r~~ 236 (477)
T 1r9o_A 163 SIIFHKRFDYKD----QQFLNLMEKLNENIKILSSPWIQICNNFSPIIDYF--PGTHNKLLKNVAFMKSYILEKVKEHQE 236 (477)
T ss_dssp HHHHSCCCCTTC----HHHHHHHHHHHHHHHHHTCCBC-------CCCSCC--TTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCcCCCCC----HHHHHHHHHHHHHHHhhccchhHHHhhccHHHHhc--chHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999886433 22334444444444322211 22345776 3443 333456677778889999999988876
Q ss_pred HhccccCCCCCCccHHHHHHhccCC--CCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 277 HAKRKSFNEHGTKDMVDVLLQLADD--PTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 277 ~~~~~~~~~~~~~d~l~~lL~~~~~--~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
.. +...+.|+++.||....+ .+.+..+++++|.+++.++++||+|||+++|+|++++|++||++|+|+|+|
T Consensus 237 ~~-----~~~~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~~~~kl~~E 309 (477)
T 1r9o_A 237 SM-----DMNNPQDFIDCFLMKMEKEKHNQPSEFTIESLENTAVDLFGAGTETTSTTLRYALLLLLKHPEVTAKVQEE 309 (477)
T ss_dssp TC-----CTTCCCSHHHHHHHHHHHHTTSCSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred cc-----CCCCchHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 43 223457999999864321 111346899999999999999999999999999999999999999999987
No 13
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A*
Probab=100.00 E-value=6.4e-43 Score=337.03 Aligned_cols=294 Identities=17% Similarity=0.224 Sum_probs=211.3
Q ss_pred hhcCcCCCCCCCCCCCCCcccccccCCCCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhC-CcccCCCcc
Q 048567 34 FSRNKLNLLPPPGPKPWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTH-DLTFASRPA 112 (352)
Q Consensus 34 ~~~~~~~~~~~PGp~~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~-~~~f~~r~~ 112 (352)
.+|+++. ||||+++|++||++++.+.++..+.+|+++|||||++++|+.++|+++||+++++||.++ ...|.+|+.
T Consensus 9 ~~~k~~~---~PGP~~~PliGn~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~~f~~r~~ 85 (485)
T 3nxu_A 9 GLFKKLG---IPGPTPLPFLGNILSYHKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRP 85 (485)
T ss_dssp THHHHHT---CCCCCCBTTTBTGGGGGGCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTTTTTTTCCCCCC
T ss_pred hHHhhCC---CCCCCCcCeecCcHHhhcChHHHHHHHHHHcCCeEEEEeCCCCEEEECCHHHHHHHHhccchhhccCCcc
Confidence 4455444 999999999999999976788889999999999999999999999999999999999987 567877764
Q ss_pred cccccccccCCceeEecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHH
Q 048567 113 LLAGKHANFNYLVMATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLYM 192 (352)
Q Consensus 113 ~~~~~~~~~~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~~ 192 (352)
...... .+.++ +..+|+.|+++||++. +.|++++++.+.+.++++++.+++.|.+. ...++++|+.+.+..
T Consensus 86 ~~~~~~---~~~~l-~~~~g~~w~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~----~~~g~~~d~~~~~~~ 156 (485)
T 3nxu_A 86 FGPVGF---MKSAI-SIAEDEEWKRLRSLLS-PTFTSGKLKEMVPIIAQYGDVLVRNLRRE----AETGKPVTLKDVFGA 156 (485)
T ss_dssp CSCCGG---GGGST-TTCCHHHHHHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHTCCEEHHHHHHH
T ss_pred cccccc---cccCc-cccCCcHHHHHHhhcC-hhcCHHHHHHHHHHHHHHHHHHHHHHHHH----hccCCcCcHHHHHHH
Confidence 332221 23344 3456999999999996 89999999999999999999999999753 234678999999999
Q ss_pred HHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhcCC---Cccccccccccc----CccchHHHHHHHHHHHHH
Q 048567 193 FNLATMSRMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGIL---DIGDAIPWLAFL----DLQGNVKRMKAVKKKADK 265 (352)
Q Consensus 193 ~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~P~l~~l----~~~~~~~~~~~~~~~~~~ 265 (352)
+++|+|+.++||.+++..++ ....+...+..++...... .....+|++.++ ...... .+..+.+..
T Consensus 157 ~~~dvi~~~~fG~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~---~~~~~~~~~ 229 (485)
T 3nxu_A 157 YSMDVITSTSFGVNIDSLNN----PQDPFVENTKKLLRFDFLDPFFLSITVFPFLIPILEVLNICVFP---REVTNFLRK 229 (485)
T ss_dssp HHHHHHHHHHHSCCCCGGGC----TTCHHHHHHTTSCCCCTTSHHHHHHHHCTTHHHHHHHTTCCSSC---HHHHHHHHH
T ss_pred HHHHHHHHHHcCCccccccC----CCcHHHHHHHHHhchhhHHHHHHHHHHhhhhHHHHHHhhhhhch---HHHHHHHHH
Confidence 99999999999999876432 1122333222221100000 011234433221 111111 122233444
Q ss_pred HHHHHHHHHHHHhccccCCCCCCccHHHHHHhccCCCC--cCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhCh
Q 048567 266 FYEHVLDEHERHAKRKSFNEHGTKDMVDVLLQLADDPT--LEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNP 343 (352)
Q Consensus 266 ~~~~~i~~~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~--~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~P 343 (352)
++..+++++.+. ....+.|+++.|++...... .+..++++++.+++.++++||+|||+++|+|++++|++||
T Consensus 230 ~~~~~~~~~~~~------~~~~~~d~l~~ll~~~~~~~~~~~~~l~~~ei~~~~~~l~~AG~dTTa~~l~~~l~~L~~~P 303 (485)
T 3nxu_A 230 SVKRMKESRLED------TQKHRVDFLQLMIDSQNSKETESHKALSDLELVAQSIIFIFAGYETTSSVLSFIMYELATHP 303 (485)
T ss_dssp HHHHHHHHHHHC------C---CCCHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhc------cCCCcccHHHHHHHhhhccccccccCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCH
Confidence 444444444321 23456899999998654311 1346899999999999999999999999999999999999
Q ss_pred HHHHHhhhC
Q 048567 344 RVIQKATEE 352 (352)
Q Consensus 344 evq~kl~~E 352 (352)
++|+|+|+|
T Consensus 304 ~~~~kl~~E 312 (485)
T 3nxu_A 304 DVQQKLQEE 312 (485)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999987
No 14
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3tik_A* 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Probab=100.00 E-value=1e-40 Score=318.39 Aligned_cols=287 Identities=15% Similarity=0.191 Sum_probs=229.9
Q ss_pred CCCCCCC-CCcccccccCCCCCcHHHHHHHhhcC-CeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCcccccccccc
Q 048567 43 PPPGPKP-WPLIGNLNLIGQLPHVSLHSLSQKYG-PIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPALLAGKHAN 120 (352)
Q Consensus 43 ~~PGp~~-~pi~G~l~~~~~~~~~~~~~~~~kYG-~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~~~~~~~ 120 (352)
+||||++ +|++||++++.++++..+.+|+++|| |||++++|+.++|+++||+++++++.+++..|++|+........
T Consensus 4 ~PPg~p~~~P~iG~~~~~~~~~~~~~~~~~~~yG~~i~~~~~~~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~~~~~- 82 (450)
T 3gw9_A 4 LPPVYPVTVPILGHIIQFGKSPLGFMQECKRQLKSGIFTINIVGKRVTIVGDPHEHSRFFLPRNEVLSPREVYSFMVPV- 82 (450)
T ss_dssp CCCBCCCCSTTTBTHHHHHHCHHHHHHHHHHHHTCSEEEEEETTEEEEEECCGGGTHHHHSSCTTTEESTGGGGGGHHH-
T ss_pred CCCCCCCCcchhccHHHHccCHHHHHHHHHHHhCCCeEEEEECCEeEEEEeCHHHHHHHHhCChhhccchhhHHHHHHH-
Confidence 7999765 99999999986678889999999999 99999999999999999999999999988788877643322222
Q ss_pred cCCceeEecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHH-HHHhcCCCCCCCCCCcchHHHHHHHHHHHHH
Q 048567 121 FNYLVMATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLF-KMYKSSSSSSPSSTPVHLKDRLYMFNLATMS 199 (352)
Q Consensus 121 ~~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~-~l~~~~~~~~~~~~~vd~~~~~~~~t~~vi~ 199 (352)
.|.|+++..+|+.|+++||++. +.|++++++.+.+.++++++.+++ .|.+ .++++|+.+.+..+++++++
T Consensus 83 -~g~~~~~~~~~~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~ll~~~~~~-------~~~~vd~~~~~~~~~~~~i~ 153 (450)
T 3gw9_A 83 -FGEGVAYAAPYPRMREQLNFLA-EELTIAKFQNFVPAIQHEVRKFMAANWDK-------DEGEINLLEDCSTMIINTAC 153 (450)
T ss_dssp -HCTTSGGGSCHHHHHHHHHHHH-HTTSGGGCTTHHHHHHHHHHHHHHHHSCS-------SEEEEEHHHHHHHHHHHHHH
T ss_pred -hcCCcccCCCcHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHhcc-------CCCcccHHHHHHHHHHHHHH
Confidence 2445666667999999999985 889999999999999999999988 5421 34579999999999999999
Q ss_pred HHHHhcccccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 048567 200 RMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAK 279 (352)
Q Consensus 200 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 279 (352)
.++||.+++... ....+.+.+..+.... .....++|++++++. +..++..++.+.+.+++..+++++++..
T Consensus 154 ~~~fG~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~~~~P~l~~lp~-~~~~~~~~~~~~~~~~~~~~i~~r~~~~- 224 (450)
T 3gw9_A 154 QCLFGEDLRKRL-----DARRFAQLLAKMESSL--IPAAVFLPILLKLPL-PQSARCHEARTELQKILSEIIIARKEEE- 224 (450)
T ss_dssp HHHSCHHHHHHS-----CHHHHHHHHHHHHHTC--CGGGGTCGGGGGSCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHcCcchhhhh-----hhHHHHHHHHHHHhcc--ccchhcccchhccCC-chhHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 999999876432 1334555554443322 223456788877632 3345667788889999999998887543
Q ss_pred cccCCCCCCccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHh--hChHHHHHhhhC
Q 048567 280 RKSFNEHGTKDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELL--KNPRVIQKATEE 352 (352)
Q Consensus 280 ~~~~~~~~~~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~--~~Pevq~kl~~E 352 (352)
.. .+....|+++.|++...++ +..++++++..++.++++||+|||+++++|++++|+ .||++|+|+|+|
T Consensus 225 ~~--~~~~~~d~l~~ll~~~~~~--~~~l~~~~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~~~p~~~~~l~~E 295 (450)
T 3gw9_A 225 VN--KDSSTSDLLSGLLSAVYRD--GTPMSLHEVCGMIVAAMFAGQHTSSITTTWSMLHLMHPANVKHLEALRKE 295 (450)
T ss_dssp HH--TSCCCCSHHHHHHHCBCTT--SCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHH
T ss_pred cc--cCCccchHHHHHHHhhccC--CCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHcCCcchhHHHHHHHH
Confidence 11 2356789999999876432 446999999999999999999999999999999999 999999999987
No 15
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ...
Probab=100.00 E-value=1.3e-39 Score=313.04 Aligned_cols=287 Identities=17% Similarity=0.200 Sum_probs=214.9
Q ss_pred CCCCCCCCCcccccccC-CCCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCcccccccccc-
Q 048567 43 PPPGPKPWPLIGNLNLI-GQLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPALLAGKHAN- 120 (352)
Q Consensus 43 ~~PGp~~~pi~G~l~~~-~~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~~~~~~~- 120 (352)
.||||+++|++||++++ .+.++..+.+|+++|||||++++|+.++++++||+++++|+.+. .|. ++.......+.
T Consensus 4 ~~PGP~~~p~iG~l~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~~~~~~~il~~~--~f~-~~~~~~~~~~~~ 80 (470)
T 2ij2_A 4 EMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDES--RFD-KNLSQALKFVRD 80 (470)
T ss_dssp CCCCCCCCGGGTTGGGGCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHTCTT--TEE-ECCCHHHHHHHH
T ss_pred CCCCCCCCCccccHHHHhcccchHHHHHHHHHhCCeEEEecCCccEEEECCHHHHHHHHhhc--CcC-cCchhHHHHHHH
Confidence 58999999999999998 45678889999999999999999999999999999999999653 353 32111111111
Q ss_pred cCCceeEec-CCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHHHHHHH
Q 048567 121 FNYLVMATA-PYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLYMFNLATMS 199 (352)
Q Consensus 121 ~~g~~~~~~-~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~~~t~~vi~ 199 (352)
..+.++++. .+|+.|+++||++. +.|++++++.+.+.+.++++++++.|.+. ..++++|+.+.+..+++|+|+
T Consensus 81 ~~~~~l~~~~~~g~~w~~~Rr~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-----~~~~~vd~~~~~~~~~~~vi~ 154 (470)
T 2ij2_A 81 FAGDGLFTSWTHEKNWKKAHNILL-PSFSQQAMKGYHAMMVDIAVQLVQKWERL-----NADEHIEVPEDMTRLTLDTIG 154 (470)
T ss_dssp HHTTSGGGSCTTSHHHHHHHHHHG-GGGSTTTHHHHHHHHHHHHHHHHHHHHTC-----CTTCCEEHHHHHHHHHHHHHH
T ss_pred hcCCceEEcCCCchHHHHHHHHhc-cccCHHHHHHHHHHHHHHHHHHHHHHHhh-----CCCCeEEHHHHHHHHHHHHHH
Confidence 123455444 47999999999986 89999999999999999999999998752 245689999999999999999
Q ss_pred HHHHhcccccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 048567 200 RMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAK 279 (352)
Q Consensus 200 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 279 (352)
.++||.+++.... .....+...+...+....... ...|++.++ .....+++.+..+.+.+++..+|+++++..
T Consensus 155 ~~~fG~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~- 227 (470)
T 2ij2_A 155 LCGFNYRFNSFYR---DQPHPFITSMVRALDEAMNKL--QRANPDDPA-YDENKRQFQEDIKVMNDLVDKIIADRKASG- 227 (470)
T ss_dssp HHHHSCCCCGGGC---SSCCHHHHHHHHHHHHHHHTC-----CTTSGG-GHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHcCCccccccc---CCCCHHHHHHHHHHHHHHHHH--hhhhhHhhc-cchHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 9999998764311 011234344443332221110 011334333 122345566677788888888888876532
Q ss_pred cccCCCCCCccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 280 RKSFNEHGTKDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 280 ~~~~~~~~~~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
..+.|+++.|++..++++ +..+++++|.+++.++++||+|||+++|+|++++|++||++|+|+|+|
T Consensus 228 ------~~~~dll~~ll~~~~~~~-~~~ls~~ei~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~~~~kl~~E 293 (470)
T 2ij2_A 228 ------EQSDDLLTHMLNGKDPET-GEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEE 293 (470)
T ss_dssp ------CCCSSHHHHHHHCCCTTT-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred ------cCchhHHHHHHhccCccc-CCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 345799999998654221 346999999999999999999999999999999999999999999987
No 16
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=100.00 E-value=6.2e-40 Score=314.52 Aligned_cols=280 Identities=18% Similarity=0.215 Sum_probs=216.9
Q ss_pred CCCCCCC-CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCccccccccccc
Q 048567 43 PPPGPKP-WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPALLAGKHANF 121 (352)
Q Consensus 43 ~~PGp~~-~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~~~~~~~~ 121 (352)
.||||++ +||+||++++.++++..+.+|++||||||++++|+.++|+++||+++++++.+++..|+.++....... ..
T Consensus 12 ~PP~~~~~lP~iG~~~~~~~~~~~~~~~~~~kYG~i~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~~~-~~ 90 (461)
T 3ld6_A 12 SPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTT-PV 90 (461)
T ss_dssp CCCBCCCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHHHHH-HH
T ss_pred CCCCCCCCcCeeeeHHHhhhCHHHHHHHHHHHhCCEEEEEECCccEEEEeCHHHHHHHHhCCccccCCCcchhhhhh-cc
Confidence 4677764 999999999977889999999999999999999999999999999999999998877877654322111 11
Q ss_pred CCceeEecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHHHHHHHHH
Q 048567 122 NYLVMATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLYMFNLATMSRM 201 (352)
Q Consensus 122 ~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~~~t~~vi~~~ 201 (352)
.|.+++++.+|+.|+++|+++. +.|+.+.++++.+.++++++.+++.|.+ +..+|+.+.+..+++++++.+
T Consensus 91 ~g~~~~~~~~~~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~i~~~ 161 (461)
T 3ld6_A 91 FGKGVAYDVPNPVFLEQKKMLK-SGLNIAHFKQHVSIIEKETKEYFESWGE--------SGEKNVFEALSELIILTASHC 161 (461)
T ss_dssp HCTTSGGGSCHHHHHHHHHHHH-HHSSHHHHHHHHHHHHHHHHHHGGGGCS--------EEEEEHHHHHHHHHHHHHHHH
T ss_pred CCCccccCCCcHHHHHHHHhcc-ccccHHHHhhhhHHHHHHHHHHHHHHhh--------cCCccHHHHHHHHHHHHHHHH
Confidence 2456677778999999999985 8899999999999999999888877633 347899999999999999999
Q ss_pred HHhcccccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 048567 202 LLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRK 281 (352)
Q Consensus 202 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 281 (352)
+||.+++.... ..+......+..... .....+|. +++.+ ..++..++.+.+.+++.+.|++++.
T Consensus 162 ~fG~~~~~~~~------~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~-~~~~~~~~~~~l~~~~~~~i~~r~~----- 225 (461)
T 3ld6_A 162 LHGKEIRSQLN------EKVAQLYADLDGGFS--HAAWLLPG--WLPLP-SFRRRDRAHREIKDIFYKAIQKRRQ----- 225 (461)
T ss_dssp HTCHHHHHTCC------HHHHHHHHHHHTTSS--HHHHHSCT--TSCCH-HHHHHHHHHHHHHHHHHHHHHHHTT-----
T ss_pred HcCcchhhhhh------hhhhhhhhhhhhhhh--hHHHhhhh--hccCc-HHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 99998764321 222222222221111 11112332 22222 2455667777888888888877653
Q ss_pred cCCCCCCccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 282 SFNEHGTKDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 282 ~~~~~~~~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
+.....|+++.|++...++ +..+++++|.+++.++++||+|||+++++|++++|++||++|+|+|+|
T Consensus 226 --~~~~~~d~l~~ll~~~~~~--~~~ls~~ei~~~~~~~~~aG~dTt~~~l~~~l~~L~~~P~~q~kl~~E 292 (461)
T 3ld6_A 226 --SQEKIDDILQTLLDATYKD--GRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQKKCYLE 292 (461)
T ss_dssp --CCCCCCSHHHHHHTCBCTT--SCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred --cCCCCcchhhhhHHhhhcc--cCCCCHHHHHHHHHhhhhcccccccccchhhhcccccChHHHHHHHHH
Confidence 2356789999999876543 457999999999999999999999999999999999999999999987
No 17
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=100.00 E-value=3.7e-39 Score=310.89 Aligned_cols=300 Identities=17% Similarity=0.227 Sum_probs=216.8
Q ss_pred CcCCCCCCCCCCCCCcccccccC-C----CCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCc
Q 048567 37 NKLNLLPPPGPKPWPLIGNLNLI-G----QLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRP 111 (352)
Q Consensus 37 ~~~~~~~~PGp~~~pi~G~l~~~-~----~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~ 111 (352)
++.+ .+|||+++|+. |++++ . +.++..+.+|++||||||++++|+.++|+++||+++++||.+++ .|++|+
T Consensus 6 ~pL~--~~PGP~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~kYG~i~~~~~g~~~~vvv~dp~~~~~il~~~~-~f~~r~ 81 (487)
T 3n9y_A 6 RPFN--EIPSPGDNGWL-NLYHFWRETGTHKVHLHHVQNFQKYGPIYREKLGNVESVYVIDPEDVALLFKSEG-PNPERF 81 (487)
T ss_dssp BCGG--GSCCSCSCHHH-HHHHHHHHTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHHTCC-SSCCCC
T ss_pred CCHh--hCCCCCCCChh-hHHHHHhcCCCcchhHHHHHHHHHcCceeeccCCCCCEEEEcCHHHHHHHHHhCC-CCCCCC
Confidence 4455 69999988876 77665 1 24677899999999999999999999999999999999998764 688877
Q ss_pred cccccc---ccccCCceeEecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHH
Q 048567 112 ALLAGK---HANFNYLVMATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKD 188 (352)
Q Consensus 112 ~~~~~~---~~~~~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~ 188 (352)
...... .....+.++ +..+|+.|+++||++.+.+|++++++.+.+.++++++.+++.|.+.......+++++|+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~l-~~~~g~~w~~~Rr~l~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~ 160 (487)
T 3n9y_A 82 LIPPWVAYHQYYQRPIGV-LLKKSAAWKKDRVALNQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDISD 160 (487)
T ss_dssp CCHHHHHHHHHTTCCCCG-GGCCHHHHHHHHHHHHHHHTSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSSSEEECCHH
T ss_pred CCcHHHHHHHHccccCCC-ccCCcHHHHHHHHhcCcccCCchHHHHhhhHHHHHHHHHHHHHHHHhcccccCCCCccHHH
Confidence 543211 111223344 4567999999999996336999999999999999999999998752100012355899999
Q ss_pred HHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhcCCCccccccc--ccccCccchHHHHHHHHHHHHHH
Q 048567 189 RLYMFNLATMSRMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPW--LAFLDLQGNVKRMKAVKKKADKF 266 (352)
Q Consensus 189 ~~~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~--l~~l~~~~~~~~~~~~~~~~~~~ 266 (352)
.+..+++|+|+.++||.+++..++..+.....+...+..++..... ...+|. +++++ ....++..+..+.+.++
T Consensus 161 ~~~~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~l~~~~~-~~~~~~~~~~~~~~~~~ 236 (487)
T 3n9y_A 161 DLFRFAFESITNVIFGERQGMLEEVVNPEAQRFIDAIYQMFHTSVP---MLNLPPDLFRLFR-TKTWKDHVAAWDVIFSK 236 (487)
T ss_dssp HHHHHHHHHHHHHHHSSCCCTTSSSCCHHHHHHHHHHHHHHHHHGG---GTTSCHHHHHHHC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccCCCCChHHHHHHHHHHHHHHHHHH---HHhcCHHHHhhcc-cHHHHHHHHHHHHHHHH
Confidence 9999999999999999998754322122344555555555543321 123442 23332 12234444455555666
Q ss_pred HHHHHHHHHHHhccccCCCCCCccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHH
Q 048567 267 YEHVLDEHERHAKRKSFNEHGTKDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVI 346 (352)
Q Consensus 267 ~~~~i~~~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq 346 (352)
+..+++++.+..+..........|+++.+++. ..+++++|.+++.++++||+|||+++|+|++|+|++||++|
T Consensus 237 ~~~~i~~~~~~~~~~~~~~~~~~d~l~~ll~~-------~~l~~~ei~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~~~ 309 (487)
T 3n9y_A 237 ADIYTQNFYWELRQKGSVHHDYRGILYRLLGD-------SKMSFEDIKANVTEMLAGGVDTTSMTLQWHLYEMARNLKVQ 309 (487)
T ss_dssp HHHHHHHHHHHHHHHCCCCSSCCCHHHHHHHS-------CSSCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHhcCCcccchHHHHHHHHhc-------CCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhChHHH
Confidence 66777665544311111224568999999973 24899999999999999999999999999999999999999
Q ss_pred HHhhhC
Q 048567 347 QKATEE 352 (352)
Q Consensus 347 ~kl~~E 352 (352)
+|+|+|
T Consensus 310 ~kl~~E 315 (487)
T 3n9y_A 310 DMLRAE 315 (487)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999987
No 18
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding, monooxygenase, NADP, oxidoreductase, protein-inhibitor complex; HET: HEM CM6; 1.50A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A* 2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A* 1e9x_A* 1u13_A*
Probab=100.00 E-value=1.6e-37 Score=297.45 Aligned_cols=279 Identities=14% Similarity=0.209 Sum_probs=197.5
Q ss_pred CCCC-CCCCCcccccccCCCCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCccccccccccc
Q 048567 43 PPPG-PKPWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPALLAGKHANF 121 (352)
Q Consensus 43 ~~PG-p~~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~~~~~~~~ 121 (352)
+||| |+++|++||++++..+++..+.+|+++|||||++++|+.++++++||+++++|+.+++..|+.++........
T Consensus 5 ~PPg~p~~~P~iG~~~~~~~~~~~~~~~l~~~yG~v~~~~~~~~~~~vv~~~~~~~~il~~~~~~~~~~~~~~~~~~~-- 82 (455)
T 2cib_A 5 ALPRVSGGHDEHGHLEEFRTDPIGLMQRVRDELGDVGTFQLAGKQVVLLSGSHANEFFFRAGDDDLDQAKAYPFMTPI-- 82 (455)
T ss_dssp CCCBCSCCCBTTBTHHHHTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEECTTSCGGGHHH--
T ss_pred CCCCCCCCCCCccCHHHHhhChHHHHHHHHHHcCCEEEEEeCCceEEEECCHHHHHHHHhcCccccCcccchhHHHhh--
Confidence 7898 7899999999988667888999999999999999999999999999999999998876677776543211111
Q ss_pred CCceeEecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHHHHHHHHH
Q 048567 122 NYLVMATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLYMFNLATMSRM 201 (352)
Q Consensus 122 ~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~~~t~~vi~~~ 201 (352)
.|.++. . +|+.|+++|+++. +.|++++++.+.+.++++++.+++.|. .++++|+.+.+..+++|+|+.+
T Consensus 83 ~g~~~~-~-~~~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~~~--------~~~~vd~~~~~~~~~~~vi~~~ 151 (455)
T 2cib_A 83 FGEGVV-F-DASPERRKEMLHN-AALRGEQMKGHAATIEDQVRRMIADWG--------EAGEIDLLDFFAELTIYTSSAC 151 (455)
T ss_dssp HC-----------------------CCHHHHHHHHHHHHHHHHHHHTTCC--------SEEEEEHHHHHHHHHHHHHHHH
T ss_pred cCCccc-c-CcHHHHHHHhhhc-cccCHHHHHHHHHHHHHHHHHHHHHhC--------CCCcEeHHHHHHHHHHHHHHHH
Confidence 133443 3 4999999999985 899999999999999999999887752 2357999999999999999999
Q ss_pred HHhcccccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 048567 202 LLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRK 281 (352)
Q Consensus 202 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 281 (352)
+||.+++.... ..+......+.... .....++||+ +.+ ..++..++.+.+.+++..+|+++++.. .
T Consensus 152 ~fG~~~~~~~~------~~~~~~~~~~~~~~--~~~~~~~p~l---~~~-~~~~~~~~~~~~~~~~~~~i~~r~~~~-~- 217 (455)
T 2cib_A 152 LIGKKFRDQLD------GRFAKLYHELERGT--DPLAYVDPYL---PIE-SFRRRDEARNGLVALVADIMNGRIANP-P- 217 (455)
T ss_dssp HTCHHHHTTCC------HHHHHHHHHHHTTC--CGGGGTCTTC---SCH-HHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HcCCCcchhhh------HHHHHHHHHHHhhh--hHHHHhcccC---CCh-hHHHHHHHHHHHHHHHHHHHHHHHhcc-c-
Confidence 99998764321 23444444332211 1122234532 111 234556677788888888888877543 0
Q ss_pred cCCCCCCccHHHHHHhccCCCCcCCC-CCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 282 SFNEHGTKDMVDVLLQLADDPTLEVK-VERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 282 ~~~~~~~~d~l~~lL~~~~~~~~~~~-~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
.....+|+++.|++...++ +.. +++++|.+++.++++||+|||+++++|++++|++||++|+|+|+|
T Consensus 218 --~~~~~~dll~~ll~~~~~~--~~~~l~~~~i~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~~~~l~~E 285 (455)
T 2cib_A 218 --TDKSDRDMLDVLIAVKAET--GTPRFSADEITGMFISMMFAGHHTSSGTASWTLIELMRHRDAYAAVIDE 285 (455)
T ss_dssp ------CCCHHHHHHHCBCTT--SSBSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred --CCCCcccHHHHHHHhhhhc--CCCCCCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 1112349999999875432 334 999999999999999999999999999999999999999999987
No 19
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase, metal-binding, heme, iron; HET: HEM REA; 2.10A {Synechocystis SP} PDB: 2ve4_A*
Probab=100.00 E-value=1.2e-37 Score=297.38 Aligned_cols=275 Identities=17% Similarity=0.159 Sum_probs=207.1
Q ss_pred CcCCCCCCCCCCCCCcccccccCCCCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCcccccc
Q 048567 37 NKLNLLPPPGPKPWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPALLAG 116 (352)
Q Consensus 37 ~~~~~~~~PGp~~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~~~ 116 (352)
++.+ .||||+++|++||++++..+++ .+.+++++|||||++++++.++++++||+++++|+.+++..|+.+... ..
T Consensus 9 ~~~~--~pPgp~~~P~iG~~~~~~~~~~-~~~~~~~~yg~v~~~~~~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~-~~ 84 (444)
T 2ve3_A 9 NSLP--IPPGDFGLPWLGETLNFLNDGD-FGKKRQQQFGPIFKTRLFGKNVIFISGALANRFLFTKEQETFQATWPL-ST 84 (444)
T ss_dssp CCCC--CCCCCCCBTTTBTHHHHHHCTT-HHHHHHHHHCSSEEEEETTEEEEEECSHHHHHHHTSSCTTTEEEECCH-HH
T ss_pred CCCC--CCCCCCCCCccccHHHHhcCcH-HHHHHHHHcCCeEEEeeCCCCEEEEcCHHHHHHHHhCCCcccccchhH-HH
Confidence 4566 8999999999999988743455 778999999999999988888999999999999998876556532211 11
Q ss_pred cccccCCceeEecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHHHH
Q 048567 117 KHANFNYLVMATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLYMFNLA 196 (352)
Q Consensus 117 ~~~~~~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~~~t~~ 196 (352)
..+. +..++++ .+|+.|+++||++. +.|++++++.+.+.++++++.+++.|.. ++++|+.+.+..+++|
T Consensus 85 ~~~~-g~~~l~~-~~g~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~--------~~~vd~~~~~~~~~~~ 153 (444)
T 2ve3_A 85 RILL-GPNALAT-QMGEIHRSRRKILY-QAFLPRTLDSYLPKMDGIVQGYLEQWGK--------ANEVIWYPQLRRMTFD 153 (444)
T ss_dssp HHHH-CTTSGGG-CCHHHHHHHHHHHH-GGGCHHHHHTTHHHHHHHHHHHHHHHHH--------SSEEEHHHHHHHHHHH
T ss_pred HHHh-Ccccccc-CCchHHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHHHHHhcC--------CCcEeHHHHHHHHHHH
Confidence 1111 2224444 56999999999985 8999999999999999999999999853 3579999999999999
Q ss_pred HHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048567 197 TMSRMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHER 276 (352)
Q Consensus 197 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 276 (352)
+|+.++|| +....+ ..+.+.+..+...... +...+|. ...++..++.+.+.+++.++|+++++
T Consensus 154 vi~~~~fG-~~~~~~-------~~~~~~~~~~~~~~~~--~~~~~p~-------~~~~~~~~~~~~~~~~~~~~i~~r~~ 216 (444)
T 2ve3_A 154 VAATLFMG-EKVSQN-------PQLFPWFETYIQGLFS--LPIPLPN-------TLFGKSQRARALLLAELEKIIKARQQ 216 (444)
T ss_dssp HHHHHHTC-HHHHSC-------TTHHHHHHHHHHHHSS--CCCCSTT-------SHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcC-CCcccH-------HHHHHHHHHHHHHHhc--CCccCCC-------cHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999 332211 1222223223222211 1111221 11345566777888888888887754
Q ss_pred HhccccCCCCCCccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 277 HAKRKSFNEHGTKDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 277 ~~~~~~~~~~~~~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
. +....|+++.|++..+++ +..++++++.+++.++++||+|||+++++|++++|++||++|+|+|+|
T Consensus 217 ~-------~~~~~d~l~~ll~~~~~~--~~~l~~~~i~~~~~~~~~AG~~Tt~~~l~~~l~~L~~~P~~~~~l~~E 283 (444)
T 2ve3_A 217 Q-------PPSEEDALGILLAARDDN--NQPLSLPELKDQILLLLFAGHETLTSALSSFCLLLGQHSDIRERVRQE 283 (444)
T ss_dssp S-------CCCCSSHHHHHHHCBCTT--SCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred C-------CCCccCHHHHHHhccccC--CCCCCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHCHHHHHHHHHH
Confidence 2 235689999999875432 346999999999999999999999999999999999999999999987
No 20
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1, molecular mechanism, heme, iron, metal-binding, monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor A3} PDB: 3el3_A*
Probab=100.00 E-value=6.8e-38 Score=300.82 Aligned_cols=276 Identities=20% Similarity=0.272 Sum_probs=188.1
Q ss_pred CCCCCCCCCcccccccCCCCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCcccc-ccccccc
Q 048567 43 PPPGPKPWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPALL-AGKHANF 121 (352)
Q Consensus 43 ~~PGp~~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~-~~~~~~~ 121 (352)
.||||+++|++||++++..+++..+.+|++ |||||++++|+.++++++||+++++|+.++ .|..++... .....
T Consensus 24 ppPgP~~~P~iG~~~~~~~~p~~~~~~l~~-yGpv~~~~~g~~~~~vv~~~~~i~~il~~~--~~~~~~~~~~~~~~~-- 98 (467)
T 3dbg_A 24 PPVAGGGVPLLGHGWRLARDPLAFMSQLRD-HGDVVRIKLGPKTVYAVTNPELTGALALNP--DYHIAGPLWESLEGL-- 98 (467)
T ss_dssp CCEECCCCSTTHHHHHHHHCHHHHHHHHGG-GCSEEEEEETTEEEEEECSHHHHHHHHHCT--TC---------------
T ss_pred CCCCCCCCCcccchHHhccCHHHHHHHHHH-hCCEEEEEeCCccEEEECCHHHHHHHHhCc--CcccccchHHHHHHh--
Confidence 588999999999999986678888889987 999999999999999999999999999887 564333221 11111
Q ss_pred CC-ceeEecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHHHHHHHH
Q 048567 122 NY-LVMATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLYMFNLATMSR 200 (352)
Q Consensus 122 ~g-~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~~~t~~vi~~ 200 (352)
.| .+++ ..+|+.|+++||++. +.|++++++.+.+.++++++.+++.|. .++++|+.+.+..+++++++.
T Consensus 99 ~g~~~l~-~~dg~~h~~~R~~l~-~~fs~~~l~~~~~~i~~~~~~l~~~l~--------~~~~~d~~~~~~~~~~~vi~~ 168 (467)
T 3dbg_A 99 LGKEGVA-TANGPLHRRQRRTIQ-PAFRLDAIPAYGPIMEEEAHALTERWQ--------PGKTVDATSESFRVAVRVAAR 168 (467)
T ss_dssp ------------------CGGGH-HHHSTTTSTTTHHHHHHHHHHHHHHSC--------TTSCEEHHHHHHHHHHHHHHH
T ss_pred cCCCCcc-cCCcHHHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHhc--------cCCcCcHHHHHHHHHHHHHHH
Confidence 23 4444 456999999999995 889999999999999999999998873 356899999999999999999
Q ss_pred HHHhcccccccccchhhHHHHHHHHHHHHHhhcCCCccccccc--ccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048567 201 MLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPW--LAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHA 278 (352)
Q Consensus 201 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~--l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 278 (352)
++||.+++.. ....+...+..+...... ..++|+ +.+++. ...+++.+..+.+.+++..+++++++
T Consensus 169 ~~~g~~~~~~------~~~~~~~~~~~~~~~~~~---~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~r~~-- 236 (467)
T 3dbg_A 169 CLLRGQYMDE------RAERLCVALATVFRGMYR---RMVVPLGPLYRLPL-PANRRFNDALADLHLLVDEIIAERRA-- 236 (467)
T ss_dssp HHSCSSCCHH------HHHHHHHHHHHHHHC----------------------------CCHHHHHHHHHHHHHHHTT--
T ss_pred HHhCCcccch------hHHHHHHHHHHHHHHHHH---HhccchhhhhhCCC-hHhHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 9999987642 234455555554432211 223443 233321 22345566667788888888877653
Q ss_pred ccccCCCCCCccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 279 KRKSFNEHGTKDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 279 ~~~~~~~~~~~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
++..+.|+++.|++..+++ +..+++++|.+++.++++||+|||+++++|++++|++||++|+|+|+|
T Consensus 237 -----~~~~~~dll~~ll~~~~~~--~~~ls~~ei~~~~~~l~~AG~eTTa~~l~~~l~~L~~~P~~~~~lr~E 303 (467)
T 3dbg_A 237 -----SGQKPDDLLTALLEAKDDN--GDPIGEQEIHDQVVAILTPGSETIASTIMWLLQALADHPEHADRIRDE 303 (467)
T ss_dssp -----CCSSCCSHHHHHTTC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred -----cCCCchHHHHHHHhhccCC--CCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 2345689999999875432 346999999999999999999999999999999999999999999987
No 21
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein, alternative splicing, cholesterol biosynthesis, endoplasmic reticulum, heme, iron; HET: HEM KLN BCD; 2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Probab=100.00 E-value=1.1e-37 Score=298.72 Aligned_cols=284 Identities=18% Similarity=0.225 Sum_probs=215.0
Q ss_pred CcCCCCCCCC-CCCCCcccccccCCCCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCccccc
Q 048567 37 NKLNLLPPPG-PKPWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPALLA 115 (352)
Q Consensus 37 ~~~~~~~~PG-p~~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~~ 115 (352)
++.+ +||| |+++|++||++++.++++..+.+|+++|||||++++|+.++|+++++++++++|.++...|..++....
T Consensus 8 ~~~~--~PPg~P~~lP~iG~l~~~~~~~~~~~~~~~~~yG~v~~l~l~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~~~ 85 (461)
T 3i3k_A 8 AGVK--SPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSR 85 (461)
T ss_dssp --CC--CCCBCCCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHH
T ss_pred CCCC--CCCCCCCCCCccccHHhhccCHHHHHHHHHHHhCCEEEEEecCceEEEEeChHHHHHHHhccccccccchHHHH
Confidence 3456 8999 889999999999866788899999999999999999999999999999999999987766654322111
Q ss_pred ccccccCCceeEecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHHH
Q 048567 116 GKHANFNYLVMATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLYMFNL 195 (352)
Q Consensus 116 ~~~~~~~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~~~t~ 195 (352)
.. ....|.|+.+..+|+.|+++||++. +.|++++++++.+.+++++..+++.|.+ +..+|+.+.+..+++
T Consensus 86 ~~-~~~~g~g~~~~~~g~~w~~~Rr~~~-~~f~~~~l~~~~~~~~~~~~~ll~~l~~--------~~~~dl~~~~~~~~~ 155 (461)
T 3i3k_A 86 LT-TPVFGKGVAYDVPNPVFLEQKKMLK-SGLNIAHFKQHVSIIEKETKEYFESWGE--------SGEKNVFEALSELII 155 (461)
T ss_dssp HH-HHHHCTTSGGGSCHHHHHHHHHHHH-HHSSHHHHHHHHHHHHHHHHHHGGGGCS--------EEEEEHHHHHHHHHH
T ss_pred hh-hhhcCCeeeeCCCcHHHHHHHHHHh-hhhCHHHHHHHHHHHHHHHHHHHHHhhh--------cCCcCHHHHHHHHHH
Confidence 00 0112456666667999999999985 7899999999999999999998887742 235899999999999
Q ss_pred HHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHH
Q 048567 196 ATMSRMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHE 275 (352)
Q Consensus 196 ~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 275 (352)
++++.++||.++..... ..+......+.... ......+| .+++. ...++..+..+.+.+++.++|++++
T Consensus 156 ~~~~~~~~G~~~~~~~~------~~~~~~~~~~~~~~--~~~~~~~P--~~l~~-~~~~~~~~~~~~~~~~~~~~i~~~~ 224 (461)
T 3i3k_A 156 LTASHCLHGKEIRSQLN------EKVAQLYADLDGGF--SHAAWLLP--GWLPL-PSFRRRDRAHREIKDIFYKAIQKRR 224 (461)
T ss_dssp HHHHHHHTCHHHHHTCC------HHHHHHHHHHHTTS--SHHHHHSC--TTSCC-HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHccHhhhhHHH------HHHHHHHHHHHhcc--ccchhhcc--cccCC-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987754321 12222222222111 01111233 23322 2245566777788888888887765
Q ss_pred HHhccccCCCCCCccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 276 RHAKRKSFNEHGTKDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 276 ~~~~~~~~~~~~~~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
+. .....|+++.+++...++ +..+++++|..++.++++||+|||+++++|++++|++||++|+|+|+|
T Consensus 225 ~~-------~~~~~d~l~~ll~~~~~~--~~~l~~~~i~~~~~~l~~ag~~Tt~~~l~~~l~~L~~~P~~~~~l~~E 292 (461)
T 3i3k_A 225 QS-------QEKIDDILQTLLDATYKD--GRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQKKCYLE 292 (461)
T ss_dssp TC-------CCCCCSHHHHHHTCBCTT--SCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hc-------ccccccHHHHHHHhhhcc--CCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 32 345689999999876433 446999999999999999999999999999999999999999999987
No 22
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding; HET: HEM PXI; 1.7A {Streptomyces venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A* 2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Probab=100.00 E-value=1e-35 Score=283.33 Aligned_cols=265 Identities=16% Similarity=0.196 Sum_probs=194.8
Q ss_pred cCcCCCCCCCCCCCCCcccccc-cCCCCCcHHHHHHHhhcCCeeEEee-cCeeEEEeCCHHHHHHHHhhCCcccCCCccc
Q 048567 36 RNKLNLLPPPGPKPWPLIGNLN-LIGQLPHVSLHSLSQKYGPIIQLKF-GLETVVVASSAEVAELILKTHDLTFASRPAL 113 (352)
Q Consensus 36 ~~~~~~~~~PGp~~~pi~G~l~-~~~~~~~~~~~~~~~kYG~i~~i~~-g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~ 113 (352)
+++++ .||||+++|++||+. .+..+++..+.+| ++|||||++++ |+.++++++||+++++||.++ .|++++..
T Consensus 22 ~~~~~--~~PGP~~~p~lG~~~~~~~~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~ 96 (436)
T 2cd8_A 22 RRTQQ--GTTASPPVLDLGALGQDFAADPYPTYARL-RAEGPAHRVRTPEGDEVWLVVGYDRARAVLADP--RFSKDWRN 96 (436)
T ss_dssp --------------CCBHHHHHHHHHHCCHHHHHHH-HTTCSEEEEECSSCCEEEEECSHHHHHHHHHCT--TEECCGGG
T ss_pred chhcc--CCCCCCccccCCCCCcccccChHHHHHHH-HHhCCeeeeccCCCCeEEEEcCHHHHHHHHcCC--CCcccccc
Confidence 44556 799999999999986 4456788889999 89999999997 888899999999999999876 57776542
Q ss_pred cccccc---ccCCceeEecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHH
Q 048567 114 LAGKHA---NFNYLVMATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRL 190 (352)
Q Consensus 114 ~~~~~~---~~~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~ 190 (352)
...... ...+.+++ ..+|+.|+++||++. +.|++++++.+.+.++++++.+++.|.+. .++++|+.+.+
T Consensus 97 ~~~~~~~~~~~~~~~l~-~~dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~------~~~~vd~~~~~ 168 (436)
T 2cd8_A 97 STTPLTEAEAALNHNML-ESDPPRHTRLRKLVA-REFTMRRVELLRPRVQEIVDGLVDAMLAA------PDGRADLMESL 168 (436)
T ss_dssp CSSCCCTTGGGTCCSGG-GCCTTHHHHHHHHHG-GGSSHHHHHTTHHHHHHHHHHHHHHHHTC------TTSCEEHHHHT
T ss_pred ccccccccccccccccc-ccCchHHHHHHHHhH-HhhCHHHHHHHHHHHHHHHHHHHHHHHhc------cCCCcchHHHH
Confidence 111110 11233444 456999999999995 89999999999999999999999999741 25689999987
Q ss_pred -HHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHH
Q 048567 191 -YMFNLATMSRMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEH 269 (352)
Q Consensus 191 -~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~ 269 (352)
..+++++|+. +||.+.+. ...+......++. . . + + ++..+..+.+.+++.+
T Consensus 169 ~~~~~~~vi~~-~~G~~~~~--------~~~~~~~~~~~~~----~--~---~-------~---~~~~~~~~~~~~~~~~ 220 (436)
T 2cd8_A 169 AWPLPITVISE-LLGVPEPD--------RAAFRVWTDAFVF----P--D---D-------P---AQAQTAMAEMSGYLSR 220 (436)
T ss_dssp TTHHHHHHHHH-HHTCCGGG--------HHHHHHHHHHHHS----C--S---S-------T---THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HhCCCHHH--------HHHHHHHHHHHhc----c--C---C-------H---HHHHHHHHHHHHHHHH
Confidence 5799999998 69986542 2234443333321 0 0 0 1 2345666777788888
Q ss_pred HHHHHHHHhccccCCCCCCccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHh
Q 048567 270 VLDEHERHAKRKSFNEHGTKDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKA 349 (352)
Q Consensus 270 ~i~~~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl 349 (352)
+|+++++ ....|+++.|++...++ +..+++++|.+++.++++||+|||+++|+|++++|++||++|+|+
T Consensus 221 ~i~~r~~---------~~~~d~l~~ll~~~~~~--~~~ls~~ei~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~~~~l 289 (436)
T 2cd8_A 221 LIDSKRG---------QDGEDLLSALVRTSDED--GSRLTSEELLGMAHILLVAGHETTVNLIANGMYALLSHPDQLAAL 289 (436)
T ss_dssp HHHHHTT---------SCCCSHHHHHHHHHHHC--TTTSCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHhc---------CCCCCHHHHHHHhhhcc--CCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 8876642 23479999999865321 346999999999999999999999999999999999999999999
Q ss_pred hhC
Q 048567 350 TEE 352 (352)
Q Consensus 350 ~~E 352 (352)
++|
T Consensus 290 ~~e 292 (436)
T 2cd8_A 290 RAD 292 (436)
T ss_dssp HHC
T ss_pred hhC
Confidence 987
No 23
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* 4enh_A* 4fia_A*
Probab=100.00 E-value=1.4e-34 Score=276.61 Aligned_cols=269 Identities=14% Similarity=0.201 Sum_probs=200.0
Q ss_pred CCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCccccc-c-cccc--cCCceeEecCCChhHH
Q 048567 61 QLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPALLA-G-KHAN--FNYLVMATAPYGPHWR 136 (352)
Q Consensus 61 ~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~~-~-~~~~--~~g~~~~~~~~g~~Wk 136 (352)
+.+|..+.+|+++|||||++++|+.++|+++||+++++||.++ .|..++.... . .... ..|.|+++..+|+.|+
T Consensus 10 ~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~p~~~~~il~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~w~ 87 (456)
T 3mdm_A 10 RVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFLMST--KYNKDSKMYRALQTVFGERLFGQGLVSECNYERWH 87 (456)
T ss_dssp CCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTCT--TSCCCHHHHHHHHEETTEESSTTSTTTCCCHHHHH
T ss_pred chHHHHHHHHHHHhCCeEEEEeCCCCEEEECCHHHHHHHHhhc--cccccchhHHHHHHhhcccccCCCcccCCChHHHH
Confidence 4567889999999999999999999999999999999999753 4554442211 0 0111 1245665555799999
Q ss_pred HhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHHHHHHHHHHHhcccccccccchh
Q 048567 137 QTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLYMFNLATMSRMLLGKRYTEDNQNNIV 216 (352)
Q Consensus 137 ~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~~~~~~~~~~~ 216 (352)
++||++. +.|++++++.+.+.++++++.+++.|.+. ..+++++|+.+.+..+++|+|+.++||.+++....
T Consensus 88 ~~Rr~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~----~~~~~~vd~~~~~~~~~~dvi~~~~fG~~~~~~~~---- 158 (456)
T 3mdm_A 88 KQRRVID-LAFSRSSLVSLMETFNEKAEQLVEILEAK----ADGQTPVSMQDMLTYTAMDILAKAAFGMETSMLLG---- 158 (456)
T ss_dssp HHHHHHG-GGGSHHHHHTTHHHHHHHHHHHHHHHHHT----CSSSSCEEHHHHHHHHHHHHHHHHHHSCCCCGGGT----
T ss_pred HHHhhcc-cccCHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCCeeeHHHHHHHHHHHHHHHHHcCCChhhhcc----
Confidence 9999985 89999999999999999999999999864 34567999999999999999999999999875432
Q ss_pred hHHHHHHHHHHHHHhhcCCCcccccccccccCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHH
Q 048567 217 TAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQ-GNVKRMKAVKKKADKFYEHVLDEHERHAKRKSFNEHGTKDMVDVL 295 (352)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~l~~l 295 (352)
....+...+..+...... ...|++.+++.. ...+.+.+..+.+.+++..+++++++.. .. ....+.|+++.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~-~~--~~~~~~d~l~~l 231 (456)
T 3mdm_A 159 AQKPLSQAVKLMLEGITA----SRNTLAKFLPGKRKQLREVRESIRFLRQVGRDWVQRRREAL-KR--GEEVPADILTQI 231 (456)
T ss_dssp CCHHHHHHHHHHHHHHHH----HHHSCGGGCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HT--TCCCCCCHHHHH
T ss_pred cccHHHHHHHHHHHHHHH----HHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hc--cccchhhHHHHH
Confidence 112333333333322111 012333333111 1123455666777788888888877654 11 223467999999
Q ss_pred HhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 296 LQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 296 L~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
+.... ..++++++.+++.++++||+|||+++|+|++++|++||++|+|+|+|
T Consensus 232 l~~~~-----~~~~~~~l~~~~~~l~~AG~dTTa~~l~~~l~~L~~~P~~~~kl~~E 283 (456)
T 3mdm_A 232 LKAEE-----GAQDDEGLLDNFVTFFIAGHETSANHLAFTVMELSRQPEIVARLQAE 283 (456)
T ss_dssp HHHTS-----SCSSSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhcC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 98642 35788999999999999999999999999999999999999999987
No 24
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR, atomic resolutio structural genomics/proteomics initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum} SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A* 1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A* 1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Probab=100.00 E-value=1.6e-33 Score=265.51 Aligned_cols=262 Identities=11% Similarity=0.128 Sum_probs=194.2
Q ss_pred CCCCCCCCCcccccccCCCCCcHHHHHHHhhcCCeeEEeec-CeeEEEeCCHHHHHHHHhhCC-cccCCCccccccccc-
Q 048567 43 PPPGPKPWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG-LETVVVASSAEVAELILKTHD-LTFASRPALLAGKHA- 119 (352)
Q Consensus 43 ~~PGp~~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g-~~~~vvv~~~~~i~eil~~~~-~~f~~r~~~~~~~~~- 119 (352)
+||||+++|++||+.+ +++..+.+|. +||||++++++ +.+.++|++++.++++|.++. ..+.+|+........
T Consensus 2 ~pPGp~~~P~~g~~~~---~p~~~~~~l~-~~Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~~~~~~~~r~~~~~~~~~~ 77 (404)
T 1jfb_A 2 MASGAPSFPFSRASGP---EPPAEFAKLR-ATNPVSQVKLFDGSLAWLVTKHKDVCFVATSEKLSKVRTRQGFPELSASG 77 (404)
T ss_dssp ----CCBSSCCCSSTT---SCCTHHHHHH-HHCSEEEEECTTSCEEEEECSHHHHHHHHHCTTEECCTTSTTCCCCSHHH
T ss_pred CCCCCCCCCCCCCcCC---CccHHHHHHH-HhCCeeeeecCCCCceEEEecHHHHHHHHcCCcccccccccCCccccccc
Confidence 6899999999999875 6788888885 69999998863 456677899999999998763 234445433221110
Q ss_pred ---ccCCceeEecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHHHH
Q 048567 120 ---NFNYLVMATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLYMFNLA 196 (352)
Q Consensus 120 ---~~~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~~~t~~ 196 (352)
..++.+++ ..+|+.|+++||++. +.|++++++++.+.++++++++++.|.+. ...++++|+.+.+...+.+
T Consensus 78 ~~~~~~~~~l~-~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~----~~~~~~~d~~~~~~~~~~~ 151 (404)
T 1jfb_A 78 KQAAKAKPTFV-DMDPPEHMHQRSMVE-PTFTPEAVKNLQPYIQRTVDDLLEQMKQK----GCANGPVDLVKEFALPVPS 151 (404)
T ss_dssp HHHTTSCCCGG-GCCTTHHHHHHTTTG-GGGSHHHHHHHHHHHHHHHHHHHHHHHHH----CSTTSCEEHHHHTTTHHHH
T ss_pred cchhcccCccc-ccCchhHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCCCccHHHHHHHHHHH
Confidence 11223444 456999999999985 89999999999999999999999999764 2245689999999999999
Q ss_pred HHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048567 197 TMSRMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHER 276 (352)
Q Consensus 197 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 276 (352)
+++..+||.+++.. .+.......+ ..+ . +..++..+..+.+.+++.++|+++++
T Consensus 152 ~i~~~~~G~~~~~~---------~~~~~~~~~~-----------~~~---~---~~~~~~~~~~~~~~~~~~~~i~~r~~ 205 (404)
T 1jfb_A 152 YIIYTLLGVPFNDL---------EYLTQQNAIR-----------TNG---S---STAREASAANQELLDYLAILVEQRLV 205 (404)
T ss_dssp HHHHHHHTCCGGGH---------HHHHHHHHHH-----------HCT---T---SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHH---------HHHHHHHHHH-----------hcc---C---cchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999876421 1222111111 011 1 01245566677888888888887653
Q ss_pred HhccccCCCCCCccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 277 HAKRKSFNEHGTKDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 277 ~~~~~~~~~~~~~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
....|+++.|++...+ +..++++++.+++.++++||+|||+++|+|++++|++||++|+|+|+|
T Consensus 206 ---------~~~~d~l~~ll~~~~~---~~~l~~~ei~~~~~~l~~AG~eTt~~~l~~~l~~L~~~P~~~~~l~~~ 269 (404)
T 1jfb_A 206 ---------EPKDDIISKLCTEQVK---PGNIDKSDAVQIAFLLLVAGNATMVNMIALGVATLAQHPDQLAQLKAN 269 (404)
T ss_dssp ---------SCCSSHHHHHHHHTTT---TTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHC
T ss_pred ---------CCCCcHHHHHHHhhcc---CCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHhC
Confidence 1347999999965432 346899999999999999999999999999999999999999999874
No 25
>3v8d_A Cholesterol 7-alpha-monooxygenase; cytochrome, oxidoreductase; HET: HEM 0GV; 1.90A {Homo sapiens} PDB: 3sn5_A* 3dax_A*
Probab=100.00 E-value=1.6e-35 Score=285.94 Aligned_cols=286 Identities=15% Similarity=0.122 Sum_probs=207.1
Q ss_pred hcCcCCCCCCCCCCC-CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCC-cccCCCcc
Q 048567 35 SRNKLNLLPPPGPKP-WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHD-LTFASRPA 112 (352)
Q Consensus 35 ~~~~~~~~~~PGp~~-~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~-~~f~~r~~ 112 (352)
.+++.+ +||||++ +|++||++++.++++..+.+|+++|||||++++|+.++++|++|++++++|.++. ..|..++.
T Consensus 8 ~~~~~~--~PPgp~~~lPliG~~~~~~~~p~~~~~~l~~~yGpv~~~~lg~~~~vvv~~p~~v~~vl~~~~~~~~~~~~~ 85 (491)
T 3v8d_A 8 RRRQTG--EPPLENGLIPYLGCALQFGANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHF 85 (491)
T ss_dssp CCCCTT--SCCEEEEEESSTTTTGGGTCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHSCCTTEESSHHHH
T ss_pred hccCCC--CCCCCCCCcceeccHHHHhcCHHHHHHHHHHHcCCceEEEECCEEEEEEcCHHHHHHHHhcCCccchHHHHH
Confidence 345566 8999999 6999999999888999999999999999999999999999999999999997654 22333222
Q ss_pred cccccccccCCceeEecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCC--CCCCcchHHHH
Q 048567 113 LLAGKHANFNYLVMATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSP--SSTPVHLKDRL 190 (352)
Q Consensus 113 ~~~~~~~~~~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~--~~~~vd~~~~~ 190 (352)
...... .|.+.++..+|+.|+++|+.+. +.|++++++.+.+.+.+++..+++.+.... .. ....+++.+.+
T Consensus 86 ~~~~~~---~g~~~~~~~~g~~~~~~Rr~~~-~~f~~~~l~~~~~~i~~~~~~ll~~~~~~~---~~~~~~~~~~l~~~~ 158 (491)
T 3v8d_A 86 ALSAKA---FGHRSIDPMDGNTTENINDTFI-KTLQGHALNSLTESMMENLQRIMRPPVSSN---SKTAAWVTEGMYSFC 158 (491)
T ss_dssp HHHHHH---HTCCCCCGGGSSBCCCHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHSCCSSCG---GGGCSCEEEEHHHHH
T ss_pred HHHHHh---cCCcccccccchhHHHHHHHHH-HHcCccchHHHHHHHHHHHHHHHHhhhhcc---cCCCCCcccCHHHHH
Confidence 111111 1233334456999999999885 789999999999999999998887553210 10 23468999999
Q ss_pred HHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHH
Q 048567 191 YMFNLATMSRMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHV 270 (352)
Q Consensus 191 ~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 270 (352)
..+++++++..+||.+....+ .....+......+.. +.+.+|.+.+.......++..++.+.+.+.+...
T Consensus 159 ~~~~~~~~~~~~fG~~~~~~~----~~~~~~~~~~~~~~~------~~~~~~~l~~~~p~~~~~~~~~a~~~l~~~~~~~ 228 (491)
T 3v8d_A 159 YRVMFEAGYLTIFGRDLTRRD----TQKAHILNNLDNFKQ------FDKVFPALVAGLPIHMFRTAHNAREKLAESLRHE 228 (491)
T ss_dssp HHHHHHHHHHHHHCBCCSCGG----GHHHHHHHHHHHHHH------HHHHHHHHHTTCCGGGCHHHHHHHHHHHHHTSHH
T ss_pred HHHHHHHHHHHHcCccccccc----hhhhhhHHHHHHHHH------HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999875432 123334444433322 1233444322111222355556555555544433
Q ss_pred HHHHHHHhccccCCCCCCccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhh
Q 048567 271 LDEHERHAKRKSFNEHGTKDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKAT 350 (352)
Q Consensus 271 i~~~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~ 350 (352)
+++ . .....|+++.++...++ ++.++++++..++..+++||+|||+++++|++++|++||++|+|++
T Consensus 229 ~~~----~------~~~~~d~l~~l~~~~~~---~~~~~~~ei~~~~~~~~~ag~~tt~~~l~~~l~~L~~~P~~~~~l~ 295 (491)
T 3v8d_A 229 NLQ----K------RESISELISLRMFLNDT---LSTFDDLEKAKTHLVVLWASQANTIPATFWSLFQMIRNPEAMKAAT 295 (491)
T ss_dssp HHT----T------CBSCCHHHHHHHHHHHH---HBCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHh----c------cccccHHHHHHHHHhhc---cCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 321 1 13457999999876542 2358999999999999999999999999999999999999999999
Q ss_pred hC
Q 048567 351 EE 352 (352)
Q Consensus 351 ~E 352 (352)
+|
T Consensus 296 ~E 297 (491)
T 3v8d_A 296 EE 297 (491)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 26
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A {Pseudomonas SP} SCOP: a.104.1.1
Probab=100.00 E-value=1.2e-33 Score=268.39 Aligned_cols=274 Identities=12% Similarity=0.098 Sum_probs=197.2
Q ss_pred CcCCCCCCCCCCCCCcccccccCC-----CCCcHHHHHHHhhcCCeeEEee-cCeeEEEeCCHHHHHHHHhhCCcccCCC
Q 048567 37 NKLNLLPPPGPKPWPLIGNLNLIG-----QLPHVSLHSLSQKYGPIIQLKF-GLETVVVASSAEVAELILKTHDLTFASR 110 (352)
Q Consensus 37 ~~~~~~~~PGp~~~pi~G~l~~~~-----~~~~~~~~~~~~kYG~i~~i~~-g~~~~vvv~~~~~i~eil~~~~~~f~~r 110 (352)
.+++ +||| ++|++.+.. .+++..+.+|++ ||||+++++ |+.+++++++++.++++|.+. ..|++|
T Consensus 3 ~~~~--~pp~-----~~g~l~~~~~~~~~~~p~~~~~~l~~-~gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~-~~fs~r 73 (428)
T 1cpt_A 3 ARAT--IPEH-----IARTVILPQGYADDEVIYPAFKWLRD-EQPLAMAHIEGYDPMWIATKHADVMQIGKQP-GLFSNA 73 (428)
T ss_dssp TTCC--SCHH-----HHHHHHSSGGGGCHHHHHHHHHHHHH-HCSEEEECCTTSCCEEEECSHHHHHHHHHCT-TTEESS
T ss_pred cccc--cchh-----hhcccCChhhhcccCCccHHHHHHHH-hCCeeeccccCCCCeEEEccHHHHHHHHcCc-hhccCc
Confidence 3567 8999 899876652 346777877765 899999997 778999999999999999754 478887
Q ss_pred cc-cccc---c-c-c---cc----CCceeEecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCC
Q 048567 111 PA-LLAG---K-H-A---NF----NYLVMATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSS 177 (352)
Q Consensus 111 ~~-~~~~---~-~-~---~~----~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~ 177 (352)
+. .... . . + .. .+.+++ ..+|+.|+++||++. +.|++++++++.+.++++++.+++.|.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~-~~~g~~~~~~Rr~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~----- 146 (428)
T 1cpt_A 74 EGSEILYDQNNEAFMRSISGGCPHVIDSLT-SMDPPTHTAYRGLTL-NWFQPASIRKLEENIRRIAQASVQRLLD----- 146 (428)
T ss_dssp SSCSSCCCHHHHHHHHHHTTTSSCSSCCGG-GCCTTHHHHHHHHHH-TTSSHHHHGGGHHHHHHHHHHHHHHHHT-----
T ss_pred cccccCCcccccchhccccccccccccccc-cCChHHHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 65 2211 1 1 1 11 123444 446999999999995 8999999999999999999999999964
Q ss_pred CCCCCCcchHHHH-HHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHH
Q 048567 178 SPSSTPVHLKDRL-YMFNLATMSRMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRM 256 (352)
Q Consensus 178 ~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~ 256 (352)
.++++|+...+ ..+++|+|+.+ ||.+.+.. ..+......++.... .....+|++.++ .+.+.++.
T Consensus 147 --~~~~~d~~~~~~~~~~~~vi~~~-fG~~~~~~--------~~~~~~~~~~~~~~~--~~~~~~P~l~~~-~~~~~~~~ 212 (428)
T 1cpt_A 147 --FDGECDFMTDCALYYPLHVVMTA-LGVPEDDE--------PLMLKLTQDFFGVHE--PDEQAVAAPRQS-ADEAARRF 212 (428)
T ss_dssp --SSSEEEHHHHTTTTHHHHHHHHH-HTCCGGGH--------HHHHHHHHTTTCC-------------------CHHHHH
T ss_pred --hCCCeehHHHHHhhhHHHHHHHH-cCCCHhHH--------HHHHHHHHHHHhccc--cccccccccccc-chhhHHHH
Confidence 22579998655 57999999999 99876431 233333332221110 111235555443 12334566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHH
Q 048567 257 KAVKKKADKFYEHVLDEHERHAKRKSFNEHGTKDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAM 336 (352)
Q Consensus 257 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l 336 (352)
.+..+.+.+++.++|+++++ ....|+++.|++...+ +..+++++|.+++.++++||+|||+++|+|++
T Consensus 213 ~~~~~~~~~~~~~~i~~r~~---------~~~~dll~~ll~~~~~---~~~ls~~ei~~~~~~l~~AG~eTta~~l~~~l 280 (428)
T 1cpt_A 213 HETIATFYDYFNGFTVDRRS---------CPKDDVMSLLANSKLD---GNYIDDKYINAYYVAIATAGHDTTSSSSGGAI 280 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHTT---------SCCSSHHHHHHHCBSS---SSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc---------CCCCcHHHHHHhcccc---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777888888888877642 2347999999987542 44699999999999999999999999999999
Q ss_pred HHHhhChHHHHHhhhC
Q 048567 337 SELLKNPRVIQKATEE 352 (352)
Q Consensus 337 ~~L~~~Pevq~kl~~E 352 (352)
++|++||++|+|+++|
T Consensus 281 ~~L~~~P~~~~~l~~E 296 (428)
T 1cpt_A 281 IGLSRNPEQLALAKSD 296 (428)
T ss_dssp HHHHHCHHHHHHHHHC
T ss_pred HHHHhCHHHHHHHHHh
Confidence 9999999999999998
No 27
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A {Amycolatopsis orientalis} SCOP: a.104.1.1
Probab=100.00 E-value=1.2e-32 Score=259.69 Aligned_cols=255 Identities=19% Similarity=0.207 Sum_probs=194.0
Q ss_pred cCCCCCCCCCCCCCcccccccCCCCCcHHHHHHHhhcCCeeEEe----e-cC-eeEEEeCCHHHHHHHH-hhCCcccCCC
Q 048567 38 KLNLLPPPGPKPWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLK----F-GL-ETVVVASSAEVAELIL-KTHDLTFASR 110 (352)
Q Consensus 38 ~~~~~~~PGp~~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~----~-g~-~~~vvv~~~~~i~eil-~~~~~~f~~r 110 (352)
+.+ +||||+++|+. +..+++..+.+| ++|||||+++ + |+ .++++++||+++++|| .++ .|+++
T Consensus 8 ~~~--lppgp~~~p~~-----~~~~p~~~~~~l-~~yGpv~~~~~~~~~~~~~~~~vvv~~~~~i~~vl~~~~--~~~~~ 77 (406)
T 1ued_A 8 VAP--LLREPANFQLR-----TNCDPHEDNFGL-RAHGPLVRIVGESSTQLGRDFVWQAHGYEVVRRILGDHE--HFTTR 77 (406)
T ss_dssp CCC--EEECCTTTTCE-----ETTEECHHHHHH-HTTCSEEEEESHHHHHTTSSCEEEECSHHHHHHHHHCCS--SEECC
T ss_pred CCC--CcccCcccCCC-----CCCCcHHHHHHH-HHhCCeeeecccccCCCCCccEEEEcCHHHHHHHHhhCc--ccccc
Confidence 466 88999999987 346788899999 9999999999 6 78 8999999999999999 443 35555
Q ss_pred ccccccc-ccc---cCCceeEecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcch
Q 048567 111 PALLAGK-HAN---FNYLVMATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHL 186 (352)
Q Consensus 111 ~~~~~~~-~~~---~~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~ 186 (352)
+...... .+. ..+.+++ ..+|+.|+++||++. +.|++++++.+.+.++++++++++.|.. .++++|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~l~-~~~g~~~~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~-------~g~~~d~ 148 (406)
T 1ued_A 78 PQFTQSKSGAHVEAQFVGQIS-TYDPPEHTRLRKMLT-PEFTVRRIRRMEPAIQSLIDDRLDLLEA-------EGPSADL 148 (406)
T ss_dssp CCC---------CGGGTTCGG-GCCTTHHHHHHHHHG-GGSSHHHHHHHHHHHHHHHHHHHHHHHH-------HCTTEEH
T ss_pred ccccccccccccccccccccc-cCCCHHHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCeeH
Confidence 4311110 111 0123444 457999999999996 8999999999999999999999999964 2458999
Q ss_pred HHHHHH-HHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHH
Q 048567 187 KDRLYM-FNLATMSRMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADK 265 (352)
Q Consensus 187 ~~~~~~-~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~ 265 (352)
.+.+.. +++++|+ .+||.+.+. ...+......++. . .. . .++..+..+.+.+
T Consensus 149 ~~~~~~~~~~~vi~-~~~G~~~~~--------~~~~~~~~~~~~~------~--------~~--~--~~~~~~~~~~~~~ 201 (406)
T 1ued_A 149 QGLFADPVGAHALC-ELLGIPRDD--------QREFVRRIRRNAD------L--------SR--G--LKARAADSAAFNR 201 (406)
T ss_dssp HHHTHHHHHHHHHH-HHHTCCHHH--------HHHHHHHHHHCC-----------------C--C--HHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHH-HHcCCCHHH--------HHHHHHHHHHHHh------c--------cC--C--HHHHHHHHHHHHH
Confidence 998875 9999999 479986431 1233333222111 0 01 1 1455667778888
Q ss_pred HHHHHHHHHHHHhccccCCCCCCccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHH
Q 048567 266 FYEHVLDEHERHAKRKSFNEHGTKDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRV 345 (352)
Q Consensus 266 ~~~~~i~~~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pev 345 (352)
++.++|+++++. ...|+++.|++.. +..++++++.+++.++++||+|||+++|+|++++|++||++
T Consensus 202 ~~~~~i~~r~~~---------~~~d~l~~ll~~~-----~~~ls~~ei~~~~~~l~~AG~dTt~~~l~~~l~~L~~~P~~ 267 (406)
T 1ued_A 202 YLDNLLARQRAD---------PDDGLLGMIVRDH-----GDNVTDEELKGLCTALILGGVETVAGMIGFGVLALLDNPGQ 267 (406)
T ss_dssp HHHHHHHHHHHS---------CCSSHHHHHHHHH-----GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHHHhC---------CCCCHHHHHHHhc-----CCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhChHH
Confidence 888888877542 2479999999864 23589999999999999999999999999999999999999
Q ss_pred HHHhhhC
Q 048567 346 IQKATEE 352 (352)
Q Consensus 346 q~kl~~E 352 (352)
|+|+|+|
T Consensus 268 ~~~l~~e 274 (406)
T 1ued_A 268 IELLFES 274 (406)
T ss_dssp TTHHHHC
T ss_pred HHHHHhC
Confidence 9999987
No 28
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A*
Probab=100.00 E-value=1e-33 Score=273.11 Aligned_cols=286 Identities=15% Similarity=0.143 Sum_probs=190.9
Q ss_pred cCcCCCCCCCCCCC-CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCC-cccCCCccc
Q 048567 36 RNKLNLLPPPGPKP-WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHD-LTFASRPAL 113 (352)
Q Consensus 36 ~~~~~~~~~PGp~~-~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~-~~f~~r~~~ 113 (352)
+++.+ .||||++ +|++||++++..+++..+.+|+++|||||++++|+.++||++||+++++++.++. ..|..++..
T Consensus 9 ~~~~~--~pPgp~~~~P~iG~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~~~~vvv~dp~~~~~il~~~~~~~~~~~~~~ 86 (491)
T 3dax_A 9 RRQTG--EPPLENGLIPYLGCALQFGANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHFA 86 (491)
T ss_dssp CCCTT--CCCEEEEEESCTTTTGGGTCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGTHHHHSCCTTEESSHHHHH
T ss_pred ccCCC--CCCcCCCcccchhhHHHHhhCHHHHHHHHHHhcCCeEEEEECCeEEEEEcChHHHHHHHcCCccCChHHHHHH
Confidence 34445 7899988 8999999998767888999999999999999999999999999999999997764 223221111
Q ss_pred ccccccccCCceeEecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHH
Q 048567 114 LAGKHANFNYLVMATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLYMF 193 (352)
Q Consensus 114 ~~~~~~~~~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~~~ 193 (352)
..... .|.+++...+|+.|+++|+.+. +.|+.++++.+.+.+.+++..+++...... ........+++...+..+
T Consensus 87 -~~~~~--~g~~~~~~~~g~~w~~~r~~~~-~~f~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~l~~~~~~~ 161 (491)
T 3dax_A 87 -TSAKA--FGHRSIDPMDGNTTENINDTFI-KTLQGHALNSLTESMMENLQRIMRPPVSSN-SKTAAWVTEGMYSFCYRV 161 (491)
T ss_dssp -HHHHH--HTCCCCCGGGTSBCCCHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHC-----------CCEEEEHHHHHHHH
T ss_pred -HHHHH--cCCCcccccchhHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHHHHHhhccCC-cCCCCceeccHHHHHHHH
Confidence 11111 1334331345889999999985 689998899888888887777665543210 000112357889999999
Q ss_pred HHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccc-cCccchHHHHHHHHHHHHHHHHHHHH
Q 048567 194 NLATMSRMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAF-LDLQGNVKRMKAVKKKADKFYEHVLD 272 (352)
Q Consensus 194 t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~-l~~~~~~~~~~~~~~~~~~~~~~~i~ 272 (352)
++++++.++||.+.+..+. ....+......+.. +.+.+|++.. ++ ....++..+..+.+.+. +++
T Consensus 162 i~~~~~~~~fG~~~~~~~~----~~~~~~~~~~~~~~------~~~~~p~l~~~lp-~~~~~~~~~~~~~~~~~---~~~ 227 (491)
T 3dax_A 162 MFEAGYLTIFGRDLTRRDT----QKAHILNNLDNFKQ------FDKVFPALVAGLP-IHMFRTAHNAREKLAES---LRH 227 (491)
T ss_dssp HHHHHHHHHHCBCSTTGGG----HHHHHHHHHHHHHH------HHHHHHHHHTTCC-GGGSHHHHHHHHHHHHH---TSH
T ss_pred HHHHhHHHHcCcccccccc----hhhhhhHHHHHHHH------HHHHhHHHHHhCC-HhhhhHHHHHHHHHHHH---HHH
Confidence 9999999999987654321 11112222221111 1234564432 32 11223333433333322 222
Q ss_pred HHHHHhccccCCCCCCccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 273 EHERHAKRKSFNEHGTKDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 273 ~~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
++.+ ......|+++.+++...+ ...++++++.+++.++++||+|||++|++|++++|++||++|+|+|+|
T Consensus 228 ~~~~-------~~~~~~d~l~~ll~~~~~---~~~~~~~~i~~~~~~~~~ag~~tta~tl~~~l~~L~~~P~~~~kl~~E 297 (491)
T 3dax_A 228 ENLQ-------KRESISELISLRMFLNDT---LSTFDDLEKAKTHLVVLWASQANTIPATFWSLFQMIRNPEAMKAATEE 297 (491)
T ss_dssp HHHT-------TCBSCCHHHHHHHHHHHH---HBCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HHhh-------cccchhHHHHHHHHHHHh---cCCChHHHHHHHHHHHHHHhccchHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 2221 123467999999875432 124789999999999999999999999999999999999999999987
No 29
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.50A {Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A* 3cv9_A*
Probab=100.00 E-value=1.3e-31 Score=253.19 Aligned_cols=258 Identities=14% Similarity=0.163 Sum_probs=195.2
Q ss_pred CCCCCCCCCcccccccCCCCCcHHHHHHHhhc-CCeeEEee-cCeeEEEeCCHHHHHHHHhhCCcccCCCcccccccccc
Q 048567 43 PPPGPKPWPLIGNLNLIGQLPHVSLHSLSQKY-GPIIQLKF-GLETVVVASSAEVAELILKTHDLTFASRPALLAGKHAN 120 (352)
Q Consensus 43 ~~PGp~~~pi~G~l~~~~~~~~~~~~~~~~kY-G~i~~i~~-g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~~~~~~~ 120 (352)
.||||+++|.+..-..+..+++..+.+| ++| ||||++++ |+.+++++++++++++||.++. |++++.......+.
T Consensus 6 ~~~~~~~~P~~~~~~~~~~~p~~~~~~l-~~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~ 82 (412)
T 2zbx_A 6 TTPQTTDAPAFPSNRSCPYQLPDGYAQL-RDTPGPLHRVTLYDGRQAWVVTKHEAARKLLGDPR--LSSNRTDDNFPATS 82 (412)
T ss_dssp --CCCCSSCBSSCCCSSTTSCCHHHHHH-HHSSSSEEEEECTTSCEEEEECSHHHHHHHHTCTT--EECCTTSTTSCCCS
T ss_pred CCCCCCCCCCCCCCchhccChHHHHHHH-HhcCCCeEeeccCCCCcEEEEecHHHHHHHHcCcc--cccCcccccccccc
Confidence 5788888886633334566789999999 788 99999997 8889999999999999998753 55444311111110
Q ss_pred -----c--CCceeEecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHH-
Q 048567 121 -----F--NYLVMATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLYM- 192 (352)
Q Consensus 121 -----~--~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~~- 192 (352)
. .+.++ +..+|+.|+++||++. +.|++++++.+.+.++++++.+++.|.+ .++++|+.+.+..
T Consensus 83 ~~~~~~~~~~~~l-~~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~-------~g~~~d~~~~~~~~ 153 (412)
T 2zbx_A 83 PRFEAVRESPQAF-IGLDPPEHGTRRRMTI-SEFTVKRIKGMRPEVEEVVHGFLDEMLA-------AGPTADLVSQFALP 153 (412)
T ss_dssp GGGC----CCCCG-GGCCTTHHHHHHTTTG-GGGSHHHHHHHHHHHHHHHHHHHHHHHH-------HCSCEEHHHHTTTH
T ss_pred ccccccccccccc-ccCCcHHHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCccHHHHHHHH
Confidence 0 12244 4457999999999996 7899999999999999999999999964 2458999998874
Q ss_pred HHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHH
Q 048567 193 FNLATMSRMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLD 272 (352)
Q Consensus 193 ~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~ 272 (352)
+++++|+. +||.+.+. ...+...+..++.. . .. ++..+..+.+.+++.++|+
T Consensus 154 ~~~~vi~~-~~G~~~~~--------~~~~~~~~~~~~~~---------~--------~~--~~~~~~~~~~~~~~~~~i~ 205 (412)
T 2zbx_A 154 VPSMVICR-LLGVPYAD--------HEFFQDASKRLVQS---------T--------DA--QSALTARNDLAGYLDGLIT 205 (412)
T ss_dssp HHHHHHHH-HHTCCGGG--------HHHHHHHHHHHHHC---------S--------SH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCCHHH--------HHHHHHHHHHHhcc---------C--------cH--HHHHHHHHHHHHHHHHHHH
Confidence 99999997 69987542 22344433333210 0 01 3455667778888888888
Q ss_pred HHHHHhccccCCCCCCccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 273 EHERHAKRKSFNEHGTKDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 273 ~~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
++++. ...|+++.|++...+ +..++++++.+++.++++||+|||+++|+|++++|++||++|+|+|+|
T Consensus 206 ~r~~~---------~~~d~l~~ll~~~~~---~~~ls~~ei~~~~~~~~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~~e 273 (412)
T 2zbx_A 206 QFQTE---------PGAGLVGALVADQLA---NGEIDREELISTAMLLLIAGHETTASMTSLSVITLLDHPEQYAALRAD 273 (412)
T ss_dssp HHHHS---------CCSSHHHHHHHTTTT---TTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHC
T ss_pred HHHhC---------CCCCHHHHHHHhccc---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHhC
Confidence 77542 247999999987542 346999999999999999999999999999999999999999999987
No 30
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid complex, riken structural genomics/proteomics initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Probab=100.00 E-value=5.7e-32 Score=255.98 Aligned_cols=261 Identities=12% Similarity=0.099 Sum_probs=194.6
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcC-CeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCcccc--cccccccCCcee
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYG-PIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPALL--AGKHANFNYLVM 126 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG-~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~--~~~~~~~~g~~~ 126 (352)
.|++||++++..+++..+.+|+++|| |||++++++.+++++++|++++.++ +. ..|+.++... ....+ .|.+.
T Consensus 8 ~P~lG~~~~~~~~p~~~~~~l~~~yg~pv~~~~~~g~~~v~v~~~~~~~~l~-~~-~~~~~~~~~~~~~~~~~--~g~~~ 83 (417)
T 1izo_A 8 DKSLDNSLTLLKEGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFY-DT-DRFQRQNALPKRVQKSL--FGVNA 83 (417)
T ss_dssp CCCTTHHHHHHHHGGGHHHHHHHHTTSSEEEEEETTEEEEEECSHHHHHHHT-CT-TTEECTTCSCHHHHTTT--TCTTC
T ss_pred CCccchHHHHhhCcHHHHHHHHHHhCCCeEEeecCCccEEEECCHHHHHHHh-cc-cccccccccccchhhhh--ccccc
Confidence 49999999886678889999999998 9999998888999999999998544 32 3465443211 11111 12222
Q ss_pred EecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHHHHHHHHHHHhcc
Q 048567 127 ATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLYMFNLATMSRMLLGKR 206 (352)
Q Consensus 127 ~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~ 206 (352)
++..+|+.|+++|+++. +.|++++++.+.+.+++.++++++.|.+ ++++|+.+.+..+++++|+.+ ||.+
T Consensus 84 l~~~dg~~h~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~--------~~~~dl~~~~~~~~~~vi~~~-~G~~ 153 (417)
T 1izo_A 84 IQGMDGSAHIHRKMLFL-SLMTPPHQKRLAELMTEEWKAAVTRWEK--------ADEVVLFEEAKEILCRVACYW-AGVP 153 (417)
T ss_dssp GGGCCHHHHHHHHHHHH-HTSSHHHHHHHHHHHHHHHHHHHHHHTT--------SSEEEHHHHHHHHHHHHHHHH-HTCC
T ss_pred eeecCChHHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHhc--------CCCeeHHHHHHHHHHHHHHHH-cCCC
Confidence 34556999999999985 8899999999999999999999999842 457999999999999999998 6987
Q ss_pred cccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 048567 207 YTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRKSFNEH 286 (352)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 286 (352)
++.. ....+...+..++..... ..| ..++..++.+.+.+++.++|+++++.. ...
T Consensus 154 ~~~~------~~~~~~~~~~~~~~~~~~-----~~~---------~~~~~~~~~~~~~~~~~~~i~~r~~~~-----~~~ 208 (417)
T 1izo_A 154 LKET------EVKERADDFIDMVDAFGA-----VGP---------RHWKGRRARPRAEEWIEVMIEDARAGL-----LKT 208 (417)
T ss_dssp CCTT------THHHHHHHHHHHHHHTTC-----CSH---------HHHHHHHHHHHHHHHHHHHHHHHHTTS-----SCC
T ss_pred CCch------HHHHHHHHHHHHHhhccc-----CCc---------cchhHHHHHHHHHHHHHHHHHHHHhhc-----cCC
Confidence 6542 223444433333322110 011 123455677788889999998877543 123
Q ss_pred CCccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 287 GTKDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 287 ~~~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
...|+++.|+...+.+ +..++++++.+++..++ ||+|||+++++|++++|++||++|+|+++|
T Consensus 209 ~~~d~l~~ll~~~~~~--g~~l~~~~~~~~~~~~~-ag~~tt~~~l~~~l~~L~~~P~~~~~l~~E 271 (417)
T 1izo_A 209 TSGTALHEMAFHTQED--GSQLDSRMAAIELINVL-RPIVAISYFLVFSALALHEHPKYKEWLRSG 271 (417)
T ss_dssp CTTSHHHHHHHCBCTT--SCBCCHHHHHHHHHHHH-HHHHTHHHHHHHHHHHHHHSTHHHHHHHTC
T ss_pred CcCCHHHHHHHhcccc--CCCCCHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHhhCHHHHHHHHhc
Confidence 4579999999865432 44689998888887765 999999999999999999999999999987
No 31
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase, oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas paucimobilis} PDB: 3awq_A* 3awp_A*
Probab=100.00 E-value=1.5e-31 Score=252.97 Aligned_cols=264 Identities=11% Similarity=0.088 Sum_probs=194.5
Q ss_pred CCCCCCCCcccccccCCCCCcHHHHHHHhhc-CCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCcccc--cccccc
Q 048567 44 PPGPKPWPLIGNLNLIGQLPHVSLHSLSQKY-GPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPALL--AGKHAN 120 (352)
Q Consensus 44 ~PGp~~~pi~G~l~~~~~~~~~~~~~~~~kY-G~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~--~~~~~~ 120 (352)
|||| |++||++++..+++..+.+++++| ||||++++++.+++++++|++++ ++.+. ..|+.++... ....+
T Consensus 4 pPg~---P~iG~~~~~~~~p~~~~~~l~~~y~gpv~~~~~~g~~~~vv~~~~~~~-~l~~~-~~f~~~~~~~~~~~~~~- 77 (415)
T 3awm_A 4 TPHT---KGPDETLSLLADPYRFISRQCQRLGANAFESRFLLKKTNCLKGAKAAE-IFYDT-TRFEREGAMPVAIQKTL- 77 (415)
T ss_dssp --------CCCCHHHHHHSTTTHHHHHHHHHTSSEEEEEETTEEEEEEESHHHHH-HHTCT-TTEECTTCSCHHHHTTT-
T ss_pred CCCC---CccchHHHHHhChHHHHHHHHHHhCCCeEEEecCCCcEEEEeCHHHHH-HHhcc-cccccccccchhhhhhc-
Confidence 6666 899999988667888999999999 79999998888999999999987 66544 3566543221 11111
Q ss_pred cCCceeEecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHHHHHHHH
Q 048567 121 FNYLVMATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLYMFNLATMSR 200 (352)
Q Consensus 121 ~~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~~~t~~vi~~ 200 (352)
.+..++ +..+|+.|+++|+++. +.|++++++.+.+.+.+.++++++.|.+ ++++|+.+.+..+++++|+.
T Consensus 78 ~g~~~l-~~~dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~~~~--------~~~vdl~~~~~~~~~~vi~~ 147 (415)
T 3awm_A 78 LGQGGV-QGLDGETHRHRKQMFM-GLMTPERVRALAQLFEAEWRRAVPGWTR--------KGEIVFYDELHEPLTRAVCA 147 (415)
T ss_dssp SCSSSG-GGCCHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHHHHHHHH--------HSEEEHHHHHHHHHHHHHHH
T ss_pred cCCcce-eecCcHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHhhcc--------CCcEeHHHHHHHHHHHHHHH
Confidence 111233 4556999999999985 8999999999999999999999999964 24799999999999999999
Q ss_pred HHHhcccccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 048567 201 MLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKR 280 (352)
Q Consensus 201 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 280 (352)
+ ||.+++.. ....+...+..++... +. + .+..++..++.+.+.+++..+|+++++..
T Consensus 148 ~-~G~~~~~~------~~~~~~~~~~~~~~~~---------~~---~--~~~~~~~~~~~~~~~~~~~~~i~~r~~~~-- 204 (415)
T 3awm_A 148 W-AGVPLPDD------EAGNRAGELRALFDAA---------GS---A--SPRHLWSRLARRRVDAWAKRIIEGIRAGS-- 204 (415)
T ss_dssp H-HTCCCCGG------GHHHHHHHHHHHHHST---------TC---S--SHHHHHHHHHHHHHHHHHHHHHHHHHHTS--
T ss_pred H-cCCCCCcc------hHHHHHHHHHHHHHHh---------cc---c--CchHHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 8 89876542 2233333333332211 10 1 01123456777788889999998887643
Q ss_pred ccCCCCCCccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 281 KSFNEHGTKDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 281 ~~~~~~~~~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
......|+++.|+...+.+ +..++++++.+++..++ ||+|||+++++|++++|++||++|+|+++|
T Consensus 205 ---~~~~~~d~l~~ll~~~~~~--g~~~~~~~~~~~~~~~~-ag~~tt~~~l~~~l~~L~~~P~~~~~l~~e 270 (415)
T 3awm_A 205 ---IGSGSGTAAYAIAWHRDRH--DDLLSPHVAAVELVNVL-RPTVAIAVYITFVAHALQTCSGIRAALVQQ 270 (415)
T ss_dssp ---SCCCTTSHHHHHHHCBCTT--SCBCCHHHHHHHHHHHH-HHHHTHHHHHHHHHHHHHHSTTHHHHHHHC
T ss_pred ---hcCCCCCHHHHHHhhhhcc--CCCCCHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 1234579999999865432 44689998988887765 999999999999999999999999999987
No 32
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Probab=99.98 E-value=7.1e-33 Score=259.87 Aligned_cols=248 Identities=18% Similarity=0.165 Sum_probs=181.1
Q ss_pred CCCCCCCcccccccCCCCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCc-ccccccccccCC
Q 048567 45 PGPKPWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRP-ALLAGKHANFNY 123 (352)
Q Consensus 45 PGp~~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~-~~~~~~~~~~~g 123 (352)
|++..+|++||++++..+++..+.+|+++|||||+ ++|+.++++++||+++++++.++ .|++++ .......+ .|
T Consensus 2 ~~~~~~p~iGnl~~~~~~p~~~~~~l~~~yGpv~~-~~g~~~~vvv~~~~~i~~il~~~--~f~~~~~~~~~~~~~--~g 76 (389)
T 1n97_A 2 KRLSLREAWPYLKDLQQDPLAVLLAWGRAHPRLFL-PLPRFPLALIFDPEGVEGALLAE--GTTKATFQYRALSRL--TG 76 (389)
T ss_dssp EECCHHHHHHHHHHHHHCHHHHHHHHHHHCSEEEE-CCTTCCEEEECSHHHHHHHHHCT--TEECCSHHHHHHHHH--HC
T ss_pred cccccccccccHHHHhhChHHHHHHHHHHcCCeeE-ecCCccEEEECCHHHHHHHHhcC--CCCCChhHHHHHHHH--hC
Confidence 45667899999998855678889999999999999 89999999999999999999887 687765 22111111 13
Q ss_pred ceeEecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHHHHHHHHHHH
Q 048567 124 LVMATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLYMFNLATMSRMLL 203 (352)
Q Consensus 124 ~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~~~t~~vi~~~~f 203 (352)
.++++ .+|+.|+++||++. +.|++++++.+.+.++++++.+++.|. ++++|+.+.+..+++|+|+.++|
T Consensus 77 ~~l~~-~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~---------~~~~dl~~~~~~~~~~vi~~~~f 145 (389)
T 1n97_A 77 RGLLT-DWGESWKEARKALK-DPFLPKNVRGYREAMEEEARAFFGEWR---------GEERDLDHEMLALSLRLLGRALF 145 (389)
T ss_dssp SSTTT-CCHHHHHHHHHHHC-GGGSHHHHHTTHHHHHHHHHHHHHTCC---------SCCEEHHHHHHHHHHHHHHHHHH
T ss_pred Ccccc-CCcHHHHHHHHHhC-cccCHHHHHHHHHHHHHHHHHHHHHcc---------CCcCcHHHHHHHHHHHHHHHHHc
Confidence 45544 46999999999995 899999999999999999999887762 45899999999999999999999
Q ss_pred hcccccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 048567 204 GKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRKSF 283 (352)
Q Consensus 204 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 283 (352)
|.+++. .+.+.+..+...... ..++++.+++. ...++..++.+.+.+++.++|
T Consensus 146 G~~~~~----------~~~~~~~~~~~~~~~----~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~i------------ 198 (389)
T 1n97_A 146 GKPLSP----------SLAEHALKALDRIMA----QTRSPLALLDL-AAEARFRKDRGALYREAEALI------------ 198 (389)
T ss_dssp SSCCCH----------HHHHHHHHHHHHHHH----HHHCGGGGGCH-HHHHHHHHHHHHHHHHHGGGT------------
T ss_pred CCcchH----------HHHHHHHHHHHHHHH----HHhhHHHhcCC-chhHHHHHHHHHHHHHHHHHH------------
Confidence 988751 122223333222110 01122233311 112333333333333322222
Q ss_pred CCCCCccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 284 NEHGTKDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 284 ~~~~~~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
..+ +| ..++++++.+++.++++||+|||+++++|++++|++||++|+|+++|
T Consensus 199 --~~r------ll---------~~l~~~~l~~~~~~~~~aG~~Tt~~~l~~~l~~L~~~P~~~~~l~~E 250 (389)
T 1n97_A 199 --VHP------PL---------SHLPRERALSEAVTLLVAGHETVASALTWSFLLLSHRPDWQKRVAES 250 (389)
T ss_dssp --TST------TG---------GGSCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred --HHH------hc---------ccCCHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 111 33 14899999999999999999999999999999999999999999998
No 33
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding, oxidoreductase-antibiotic complex; HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB: 3e5j_A* 3e5k_A* 3e5l_A*
Probab=99.97 E-value=1.4e-30 Score=245.36 Aligned_cols=243 Identities=15% Similarity=0.188 Sum_probs=186.1
Q ss_pred CCCCCcHHHHHHHhhcCCeeEEee-cCeeEEEeCCHHHHHHHHhhCCcccCCCcc--c-cccccccc--CCceeEecCCC
Q 048567 59 IGQLPHVSLHSLSQKYGPIIQLKF-GLETVVVASSAEVAELILKTHDLTFASRPA--L-LAGKHANF--NYLVMATAPYG 132 (352)
Q Consensus 59 ~~~~~~~~~~~~~~kYG~i~~i~~-g~~~~vvv~~~~~i~eil~~~~~~f~~r~~--~-~~~~~~~~--~g~~~~~~~~g 132 (352)
+..+++..+.+| ++||||+++++ |+.++++++++++++++|.++ .|++++. . .....+.. .+.+++ ..+|
T Consensus 17 ~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~l~-~~~g 92 (403)
T 3aba_A 17 CPFLPPDGIADI-RAAAPVTRATFTSGHEAWLVTGYEEVRALLRDS--SFSVQVPHALHTQDGVVTQKPGRGSLL-WQDE 92 (403)
T ss_dssp STTSCCTTHHHH-HHHCSEEEEECTTSCEEEEECCHHHHHHHHHCT--TEESCCSCCTTSSSCCCCCCCCTTCCT-TCCT
T ss_pred cccChhHHHHHH-HhcCCeeeeccCCCceEEEEcCHHHHHHHHcCC--Ccccccccccccccccccccccccccc-cCCc
Confidence 456788889999 89999999997 889999999999999999875 4776642 1 11111111 234544 4569
Q ss_pred hhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHH-HHHHHHHHHHHHhccccccc
Q 048567 133 PHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLY-MFNLATMSRMLLGKRYTEDN 211 (352)
Q Consensus 133 ~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~-~~t~~vi~~~~fG~~~~~~~ 211 (352)
+.|+++||++. +.|++++++.+.+.++++++.+++.|.+ .++++|+...+. .+++++|+. +||.+.+.
T Consensus 93 ~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~-------~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~-- 161 (403)
T 3aba_A 93 PEHTSDRKLLA-KEFTVRRMQALRPNIQRIVDEHLDAIEA-------RGGPVDLVKTFANAVPSMVISD-LFGVPVER-- 161 (403)
T ss_dssp THHHHHHHHHH-HHSCHHHHHTTHHHHHHHHHHHHHHHHH-------HCSCEEHHHHTTTHHHHHHHHH-HHTCCGGG--
T ss_pred hhHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCccHHHHHHHHHHHHHHHH-HcCCCHHH--
Confidence 99999999996 7899999999999999999999999973 235799987765 799999998 69987542
Q ss_pred ccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccH
Q 048567 212 QNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRKSFNEHGTKDM 291 (352)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~ 291 (352)
...+......++ .. . .| + ++..++.+.+.+++.++|+++++. ...|+
T Consensus 162 ------~~~~~~~~~~~~----~~--~--~~-------p---~~~~~~~~~~~~~~~~~i~~r~~~---------~~~dl 208 (403)
T 3aba_A 162 ------RAEFQDIAEAMM----RV--D--QD-------A---AATEAAGMRLGGLLYQLVQERRAN---------PGDDL 208 (403)
T ss_dssp ------HHHHHHHHHHHS----BS--S--SC-------H---HHHHHHHHHHHHHHHHHHHHHHHS---------CCSSH
T ss_pred ------HHHHHHHHHHHH----hc--c--Cc-------H---HHHHHHHHHHHHHHHHHHHHHHhC---------CCCCH
Confidence 123333332221 10 0 00 1 455667778888888888877642 24699
Q ss_pred HHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 292 VDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 292 l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
++.|++...+ +..++++++.+++.++++||+|||+++|+|++++|++||++|+|+++|
T Consensus 209 l~~ll~~~~~---~~~l~~~ei~~~~~~l~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~~E 266 (403)
T 3aba_A 209 ISALITTEDP---DGVVDDMFLMNAAGTLLIAAHDTTACMIGLGTALLLDSPDQLALLRED 266 (403)
T ss_dssp HHHHHTSCCT---TCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHC
T ss_pred HHHHHhhccC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHhC
Confidence 9999986532 446999999999999999999999999999999999999999999997
No 34
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes teichomyceticus} SCOP: a.104.1.0 PDB: 3o1a_A*
Probab=99.97 E-value=1.3e-30 Score=244.02 Aligned_cols=241 Identities=15% Similarity=0.111 Sum_probs=187.6
Q ss_pred CCCCcHHHHHHHhhcCCeeEEeecC----eeEEEeCCHHHHHHHHhhCCcccCCCcccccccccccCCceeEecCCChhH
Q 048567 60 GQLPHVSLHSLSQKYGPIIQLKFGL----ETVVVASSAEVAELILKTHDLTFASRPALLAGKHANFNYLVMATAPYGPHW 135 (352)
Q Consensus 60 ~~~~~~~~~~~~~kYG~i~~i~~g~----~~~vvv~~~~~i~eil~~~~~~f~~r~~~~~~~~~~~~g~~~~~~~~g~~W 135 (352)
..+++..+.+| ++||||+++++|+ .++++++||++++++| ++...|++++........ ..+.+.++..+|+.|
T Consensus 11 ~~~p~~~~~~l-r~yGpv~~~~~~~~~~g~~~vvv~~~~~v~~vl-~~~~~f~~~~~~~~~~~~-~~~~~~~~~~~g~~~ 87 (384)
T 3oo3_A 11 RLDPVPEFEEL-QKAGPLHEYDTEPGMDGRKQWLVTGHDEVRAIL-ADHERFSSMRPVDDEADR-ALLPGILQAYDPPDH 87 (384)
T ss_dssp TTEECHHHHHH-HHTCSEECCCCC------CEEEECCHHHHHHHH-HCTTTEECSCCCC------CCCTTCGGGCCTTHH
T ss_pred ccChhHHHHHH-HhcCCeeecccccccCCCCEEEEcCHHHHHHHH-hCchhccCCccccccccc-cccccccccCCChhH
Confidence 46788889999 5999999999886 8999999999999999 555678887754322111 112234455679999
Q ss_pred HHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHHHHHHHHHHHhcccccccccch
Q 048567 136 RQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLYMFNLATMSRMLLGKRYTEDNQNNI 215 (352)
Q Consensus 136 k~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~~~~~~~~~~ 215 (352)
+++||++. +.|++++++.+.+.+.++++.+++.|.+ .++++|+.+.+...+.++++..+||.+.+.
T Consensus 88 ~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~-------~~~~~d~~~~~~~~~~~~v~~~~~G~~~~~------ 153 (384)
T 3oo3_A 88 TRLRRTVA-PAYSARRMERLRPRIEEIVEECLDDFES-------VGAPVDFVRHAAWPIPAYIACEFLGVPRDD------ 153 (384)
T ss_dssp HHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHHHHH-------SCSSEEHHHHTTTHHHHHHHHHHHTCCGGG------
T ss_pred HHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCccHHHHHHHHHHHHHHHHHcCCCHHH------
Confidence 99999995 8999999999999999999999999965 356899999999988778777889987543
Q ss_pred hhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHH
Q 048567 216 VTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRKSFNEHGTKDMVDVL 295 (352)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~l~~l 295 (352)
...+...+..++. . +..++..+..+.+.+++.++++++++ .+..|+++.|
T Consensus 154 --~~~~~~~~~~~~~----------------~---~~~~~~~~~~~~~~~~~~~~i~~~~~---------~~~~d~l~~l 203 (384)
T 3oo3_A 154 --QAELSRMIRESRE----------------S---RLPRQRTLSGLGIVNYTKRLTSGKRR---------DPGDGMIGVI 203 (384)
T ss_dssp --HHHHHHHHHHHHH----------------C---SCHHHHHHHHHHHHHHHHHHHHHHHH---------SCCSSHHHHH
T ss_pred --HHHHHHHHHHHhc----------------c---CChHHHHHHHHHHHHHHHHHHHHHHh---------CCCCCHHHHH
Confidence 2334444443332 0 01245566777888888888877653 2347999999
Q ss_pred HhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 296 LQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 296 L~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
+... +..++++++..++.++++||+|||+++++|++++|++||++|+|+++|
T Consensus 204 l~~~-----~~~l~~~~l~~~~~~~~~AG~~Tta~~l~~~l~~L~~~P~~~~~l~~E 255 (384)
T 3oo3_A 204 VREH-----GAEISDEELAGLAEGNLIMAAEQMAAQLAVAVLLLVTHPDQMALLREK 255 (384)
T ss_dssp HHHH-----GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHC
T ss_pred HHhc-----CCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHCHHHHHHHHhC
Confidence 9862 346999999999999999999999999999999999999999999998
No 35
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A*
Probab=99.97 E-value=1e-31 Score=259.77 Aligned_cols=287 Identities=15% Similarity=0.094 Sum_probs=187.8
Q ss_pred hcCcCCCCCCCCCCC-CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCccc
Q 048567 35 SRNKLNLLPPPGPKP-WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPAL 113 (352)
Q Consensus 35 ~~~~~~~~~~PGp~~-~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~ 113 (352)
++++.+ +||||++ +|++||++++..+++..+.+|+++|||||++++|+.+++|++||+++++++.++...++.++..
T Consensus 13 ~~~~~~--~PPgp~~~~P~iG~~~~~~~~~~~~~~~l~~kYG~i~~v~lg~~~~vvv~~p~~~~~il~~~~~~~~~~~~~ 90 (498)
T 3b6h_A 13 RTRRPG--EPPLDLGSIPWLGYALDFGKDAASFLTRMKEKHGDIFTILVGGRYVTVLLDPHSYDAVVWEPRTRLDFHAYA 90 (498)
T ss_dssp CCCCTT--CCCEECCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHTCCTTTEECCHHH
T ss_pred hccCCC--CCCCCCCCCcchhhHHHhccCHHHHHHHHHHHcCCeEEEEECCeeEEEEcCHHHHHHHHhCccccCCchhhH
Confidence 345566 8999998 8999999998556788999999999999999999999999999999999998765324433321
Q ss_pred c-cccccccCCceeEecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHH
Q 048567 114 L-AGKHANFNYLVMATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLYM 192 (352)
Q Consensus 114 ~-~~~~~~~~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~~ 192 (352)
. ..... .|.+++ ..+|+.|+ +++. +.|+.+.++.+.+.+.+++...+....... ......+++...+..
T Consensus 91 ~~~~~~~--~g~~~~-~~~~~~~r---r~~~-~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~l~~~~~~ 160 (498)
T 3b6h_A 91 IFLMERI--FDVQLP-HYSPSDEK---ARMK-LTLLHRELQALTEAMYTNLHAVLLGDATEA---GSGWHEMGLLDFSYS 160 (498)
T ss_dssp HHHHHHT--SCCCCT-TCCHHHHH---HHHH-TTSSHHHHHHHHHHHHHHHHHHHHHHHHHH---CSSCEEEEHHHHHHH
T ss_pred HHHHHHH--cCCCcc-ccCHHHHH---HHHH-HhhchHhHHHHHHHHHHHHHHHHhhccccc---CCCcceecHHHHHHH
Confidence 1 11111 133433 34477775 3443 578888888888888777777766553210 112235788899999
Q ss_pred HHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccc-cCccchHHHHHHHHHHHHHHHHHHH
Q 048567 193 FNLATMSRMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAF-LDLQGNVKRMKAVKKKADKFYEHVL 271 (352)
Q Consensus 193 ~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~-l~~~~~~~~~~~~~~~~~~~~~~~i 271 (352)
+++++++..+||.+++..+. .........+.++..... .+.+.+|++.+ +..+...++..++.+.+. ..++
T Consensus 161 vi~~~~~~~~fG~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~---~~~~ 232 (498)
T 3b6h_A 161 FLLRAGYLTLYGIEALPRTH---ESQAQDRVHSADVFHTFR--QLDRLLPKLARGSLSVGDKDHMCSVKSRLW---KLLS 232 (498)
T ss_dssp HHHHHHHHHHHCBSCSSCCH---HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHTCCCHHHHHHHHHHHHHHH---HHTC
T ss_pred HHHHHHHHhhcCcccccccc---cchhhHHHhhHHHHHHHH--HHHhhHHHHHHHhcCchhhHHHHHHHHHHH---HHHH
Confidence 99999999999988754321 011112222233322111 12235664422 211111223333332222 2222
Q ss_pred HHHHHHhccccCCCCCCccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhh
Q 048567 272 DEHERHAKRKSFNEHGTKDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATE 351 (352)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~ 351 (352)
+++.+ ......|+++.+++..++ ...++++++. ++.++++||+|||+++++|++++|++||++|+|+|+
T Consensus 233 ~~~~~-------~~~~~~d~l~~ll~~~~~---~~~~~~~~~~-~~~~~l~ag~~tt~~~l~~~l~~L~~~P~~~~kl~~ 301 (498)
T 3b6h_A 233 PARLA-------RRAHRSKWLESYLLHLEE---MGVSEEMQAR-ALVLQLWATQGNMGPAAFWLLLFLLKNPEALAAVRG 301 (498)
T ss_dssp HHHHT-------TCBSCCHHHHHHHHHHHH---TTCCHHHHHH-HHHHHHHHHHTTHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHh-------ccccHHHHHHHHHHHHHh---CCCCHHHHHH-HHHHHHHHhhhchHHHHHHHHHHHHcCHHHHHHHHH
Confidence 22221 123467999999976532 1247888888 888889999999999999999999999999999998
Q ss_pred C
Q 048567 352 E 352 (352)
Q Consensus 352 E 352 (352)
|
T Consensus 302 E 302 (498)
T 3b6h_A 302 E 302 (498)
T ss_dssp H
T ss_pred H
Confidence 7
No 36
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron, metal-binding, oxidoreductase, substrate-soaking, cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB: 1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A* 2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A* 1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Probab=99.97 E-value=6.1e-31 Score=248.74 Aligned_cols=258 Identities=14% Similarity=0.124 Sum_probs=193.0
Q ss_pred CcCCCCCCCCCCCCCcc--cccccC-----CCCCcHHHHHHHhhcC--CeeEEe-ecCeeEEEeCCHHHHHHHHhhCCcc
Q 048567 37 NKLNLLPPPGPKPWPLI--GNLNLI-----GQLPHVSLHSLSQKYG--PIIQLK-FGLETVVVASSAEVAELILKTHDLT 106 (352)
Q Consensus 37 ~~~~~~~~PGp~~~pi~--G~l~~~-----~~~~~~~~~~~~~kYG--~i~~i~-~g~~~~vvv~~~~~i~eil~~~~~~ 106 (352)
++.+ +||||++.|.. +.+-.+ ..+++..+.+|+ +|| |||+++ +| ++++++++++++++|.+ ...
T Consensus 8 ~~~~--~~~~p~~~p~~~~~~~~~~~~~~~~~~p~~~~~~l~-~~G~~pv~~~~~~g--~~vvv~~~~~v~~vl~~-~~~ 81 (415)
T 2zwu_A 8 SNAN--LAPLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQ-ESNVPDLVWTRCNG--GHWIATRGQLIREAYED-YRH 81 (415)
T ss_dssp ---C--CCCCCTTSCGGGBCCCCTTSCTTGGGCHHHHHHGGG-STTSCSEEEECGGG--CEEEECSHHHHHHHHHC-TTT
T ss_pred Cccc--cCCCCCCCCcccccccCcCChhhcccChHHHHHHHH-hcCCCCeEEecCCC--CeEEEcCHHHHHHHHcC-ccc
Confidence 4455 99999999875 543222 235677888885 899 999998 66 58999999999999975 446
Q ss_pred cCCCc-ccccccccccCCce-eEecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 048567 107 FASRP-ALLAGKHANFNYLV-MATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPV 184 (352)
Q Consensus 107 f~~r~-~~~~~~~~~~~g~~-~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~v 184 (352)
|++++ ...... ...+.+ ++ ..+|+.|+++||++. +.|++++++.+.+.++++++.+++.|.+. +++
T Consensus 82 f~~~~~~~~~~~--~~~~~~~l~-~~~g~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~~--------~~~ 149 (415)
T 2zwu_A 82 FSSECPFIPREA--GEAYDFIPT-SMDPPEQRQFRALAN-QVVGMPVVDKLENRIQELACSLIESLRPQ--------GQC 149 (415)
T ss_dssp EETTSCSSSHHH--HHHCCCTTT-TCCTTTTHHHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHHHHGGG--------TEE
T ss_pred cCCCcccCCCCc--cccccccCc-cCCCcHHHHHHHHHH-hhhCHHHHHHHHHHHHHHHHHHHHHHHhc--------CCc
Confidence 88776 211111 111334 44 446999999999996 88999999999999999999999999642 279
Q ss_pred chHHHH-HHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHH
Q 048567 185 HLKDRL-YMFNLATMSRMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKA 263 (352)
Q Consensus 185 d~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~ 263 (352)
|+.+.+ ..+++++|+.+ ||.+++. ...+......++.. ..|. +..+..+.+
T Consensus 150 d~~~~~~~~~~~~vi~~~-~G~~~~~--------~~~~~~~~~~~~~~--------~~P~-----------~~~~~~~~~ 201 (415)
T 2zwu_A 150 NFTEDYAEPFPIRIFMLL-AGLPEED--------IPHLKYLTDQMTRP--------DGSM-----------TFAEAKEAL 201 (415)
T ss_dssp EHHHHTTTHHHHHHHHHH-HTCCGGG--------HHHHHHHHHHHHSC--------CSSS-----------CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH-cCCCHHH--------HHHHHHHHHHHHhc--------cCHH-----------HHHHHHHHH
Confidence 999865 78999999999 9987643 12344443333210 0121 234555677
Q ss_pred HHHHHHHHHHHHHHhccccCCCCCCccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhCh
Q 048567 264 DKFYEHVLDEHERHAKRKSFNEHGTKDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNP 343 (352)
Q Consensus 264 ~~~~~~~i~~~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~P 343 (352)
.+++.++|+++++ ....|+++.|++...+ +..++++++.+++.++++||+|||+++|+|++++|++||
T Consensus 202 ~~~~~~~i~~r~~---------~~~~dll~~ll~~~~~---~~~l~~~~i~~~~~~l~~AG~dTta~~l~~~l~~L~~~P 269 (415)
T 2zwu_A 202 YDYLIPIIEQRRQ---------KPGTDAISIVANGQVN---GRPITSDEAKRMCGLLLVGGLDTVVNFLSFSMEFLAKSP 269 (415)
T ss_dssp HHHHHHHHHHHHH---------SCCSSHHHHHHTCEET---TEECCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHh---------CCCCCHHHHHHHhhhc---CCCCCHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhCH
Confidence 7888888877764 1347999999986432 346999999999999999999999999999999999999
Q ss_pred HHHHHhhhC
Q 048567 344 RVIQKATEE 352 (352)
Q Consensus 344 evq~kl~~E 352 (352)
++|+|+|+|
T Consensus 270 ~~~~~l~~E 278 (415)
T 2zwu_A 270 EHRQELIER 278 (415)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999999998
No 37
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase; HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.97 E-value=1.2e-30 Score=246.31 Aligned_cols=249 Identities=18% Similarity=0.243 Sum_probs=186.2
Q ss_pred cCCCCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCcc--ccc---cc---ccc--cCCceeE
Q 048567 58 LIGQLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPA--LLA---GK---HAN--FNYLVMA 127 (352)
Q Consensus 58 ~~~~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~--~~~---~~---~~~--~~g~~~~ 127 (352)
.+.++++..+.+| ++|||||++++|+.++++++||+++++||.++. +++++. ... .. .+. ..+.++
T Consensus 12 ~~~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l- 87 (408)
T 1odo_A 12 PTGADHHTEHRTL-REGGPATWVDVLGVQAWSVSDPVLLKQLLTSSD--VSKDARAHWPAFGEVVGTWPLALWVAVENM- 87 (408)
T ss_dssp TTCTTHHHHHHHH-HTTCSEEEEEETTEEEEEECCHHHHHHHTTCTT--EESCHHHHCTTHHHHTTTCTTTHHHHCCSG-
T ss_pred cccCChHHHHHHH-HHhCCeEEeccCCCCEEEECCHHHHHHHHcCCC--cccccccccccccccccccccccccccccc-
Confidence 3456788889999 999999999998889999999999999998753 444432 110 00 000 012344
Q ss_pred ecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHH-HHHHHHHHHHHHhcc
Q 048567 128 TAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLY-MFNLATMSRMLLGKR 206 (352)
Q Consensus 128 ~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~-~~t~~vi~~~~fG~~ 206 (352)
+..+|+.|+++||++. +.|++++++.+.+.+.++++.+++.|.+. ..++++|+.+.+. .+++|+|+. +||.+
T Consensus 88 ~~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-----~~~~~~d~~~~~~~~~~~~vi~~-~~G~~ 160 (408)
T 1odo_A 88 FTAYGPNHRKLRRLVA-PAFSARRVDAMRPAVEAMVTGLVDRLAEL-----PAGEPVDLRQELAYPLPIAVIGH-LMGVP 160 (408)
T ss_dssp GGCCHHHHHHHHHTTG-GGGSHHHHHHHHHHHHHHHHHHHHHHHHS-----CTTSCEEHHHHTTTHHHHHHHHH-HHTCC
T ss_pred cccCChHHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHhh-----cCCCCcchHHHHhhhhHHHHHHH-HhCCC
Confidence 4567999999999986 89999999999999999999999999752 2366899999887 599999996 69986
Q ss_pred cccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 048567 207 YTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRKSFNEH 286 (352)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 286 (352)
.+. ...+......++.. . . . .++..+..+.+.+++.++|+++++.
T Consensus 161 ~~~--------~~~~~~~~~~~~~~------~--------~--~--~~~~~~~~~~~~~~~~~~i~~r~~~--------- 205 (408)
T 1odo_A 161 QDR--------RDGFRALVDGVFDT------T--------L--D--QAEAQANTARLYEVLDQLIAAKRAT--------- 205 (408)
T ss_dssp HHH--------HHHHHHHHHHHHCT------T--------C--C--HHHHHHHHHHHHHHHHHHHHHHHHS---------
T ss_pred HHH--------HHHHHHHHHHHhcc------c--------C--C--HHHHHHHHHHHHHHHHHHHHHHhhC---------
Confidence 532 22343333333210 0 1 1 1345666777888888888877542
Q ss_pred CCccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 287 GTKDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 287 ~~~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
...|+++.|++...++..+..+++++|.+++.++++||+|||+++++|++++|++||++|+|+|+|
T Consensus 206 ~~~d~l~~ll~~~~~~~~~~~l~~~ei~~~~~~~~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~~e 271 (408)
T 1odo_A 206 PGDDMTSLLIAARDDEGDGDRLSPEELRDTLLLMISAGYETTVNVIDQAVHTLLTRPDQLALVRKG 271 (408)
T ss_dssp CCSSHHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCHHHHHHHHHT
T ss_pred CCCCHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHCHHHHHHHHhC
Confidence 237999999986543111346899999999999999999999999999999999999999999987
No 38
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding; HET: HEM; 2.30A {Streptomyces avermitilis}
Probab=99.97 E-value=9.6e-31 Score=246.90 Aligned_cols=243 Identities=13% Similarity=0.105 Sum_probs=180.9
Q ss_pred cCCCCCcHHHHHHHhhcCCeeEEee-cCeeEEEeCCHHHHHHHHhhCCcccCCCcccccccc---ccc----CCceeEec
Q 048567 58 LIGQLPHVSLHSLSQKYGPIIQLKF-GLETVVVASSAEVAELILKTHDLTFASRPALLAGKH---ANF----NYLVMATA 129 (352)
Q Consensus 58 ~~~~~~~~~~~~~~~kYG~i~~i~~-g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~~~~~---~~~----~g~~~~~~ 129 (352)
.+..+++..+.+| ++|||||++++ |+.++++++||++++++|.++. |++++....... +.. .+.++ +.
T Consensus 21 ~~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ 96 (408)
T 3abb_A 21 TCPYQPPKAYEER-RGESPLTQVTLFDGRPAWLITGHAEGRALLVDPR--LSSDWGHPDFPVVVRRTEDRGGLAFPL-IG 96 (408)
T ss_dssp SSTTSCCHHHHHH-CCSSSEEEEECTTSCEEEEECCHHHHHHHHTCTT--EECCTTSTTCCCCC---------CCTT-TT
T ss_pred ccccCchHHHHHH-HhcCCeeeeecCCCCcEEEEeCHHHHHHHHcCCC--cccccccccccccccCCcccccccccc-cc
Confidence 3456789999999 89999999997 8889999999999999998753 444432111110 111 12234 44
Q ss_pred CCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHH-HHHHHHHHHHHHhcccc
Q 048567 130 PYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLY-MFNLATMSRMLLGKRYT 208 (352)
Q Consensus 130 ~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~-~~t~~vi~~~~fG~~~~ 208 (352)
.+|+.|+++||++. +.|++++++.+.+.++++++.+++.|.. .++++|+...+. .+++++|+. +||.+.+
T Consensus 97 ~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~-------~g~~~d~~~~~~~~~~~~vi~~-~~G~~~~ 167 (408)
T 3abb_A 97 VDDPVHARQRRMLI-PSFGVKRMNAIRPRLQSLVDRLLDDMLA-------KGPGADLVSAFALPVPSVAICE-LLGVPYG 167 (408)
T ss_dssp CCTTHHHHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHHHHH-------TCSCEEHHHHTTTHHHHHHHHH-HHTCCGG
T ss_pred CCchHHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCeehHHHHHHHHHHHHHHH-HhCCCHH
Confidence 57999999999996 7899999999999999999999999974 346899999886 499999997 6998754
Q ss_pred cccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCC
Q 048567 209 EDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRKSFNEHGT 288 (352)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 288 (352)
. ...+......++.. . .| ++..+..+.+.+++.++|+++++. ..
T Consensus 168 ~--------~~~~~~~~~~~~~~------~--~~-----------~~~~~~~~~~~~~~~~~i~~r~~~---------~~ 211 (408)
T 3abb_A 168 D--------HDFFEECSRNFVGA------A--TS-----------AEADAAFGELYTYLHGLVGRKQAE---------PE 211 (408)
T ss_dssp G--------HHHHHHHHHHHC-------------------------CCSSHHHHHHHHHHHHHHHHHHS---------CC
T ss_pred H--------HHHHHHHHHHHhcc------c--ch-----------HHHHHHHHHHHHHHHHHHHHHHhC---------CC
Confidence 2 22333333322210 0 01 112234456677777788776542 23
Q ss_pred ccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 289 KDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 289 ~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
.|+++.|++...+ +..++++++.+++.++++||+|||+++++|++++|++||++|+|+|+|
T Consensus 212 ~d~l~~ll~~~~~---~~~ls~~ei~~~~~~l~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~~e 272 (408)
T 3abb_A 212 DGLLDELIARQLE---EGDLDHDEVVMIALVLLVAGHETTVNAIALGALTLIQHPEQIDVLLRD 272 (408)
T ss_dssp SSHHHHHHHHHHT---SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGGGGGGSC
T ss_pred CCHHHHHHhcccC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHhC
Confidence 6999999986532 346999999999999999999999999999999999999999999987
No 39
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2, anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A {Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A* 2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Probab=99.97 E-value=8.1e-31 Score=247.27 Aligned_cols=254 Identities=13% Similarity=0.194 Sum_probs=189.9
Q ss_pred CCCCCCCCCcccccccCCCCCcHHHHHHHhhcCCeeEEee-cCee-EEEeCCHHHHHHHHhhCCcccCCCccccccc---
Q 048567 43 PPPGPKPWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKF-GLET-VVVASSAEVAELILKTHDLTFASRPALLAGK--- 117 (352)
Q Consensus 43 ~~PGp~~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~-g~~~-~vvv~~~~~i~eil~~~~~~f~~r~~~~~~~--- 117 (352)
.+|||+++|+.++. ..+++..+.+++ +||||+++++ |+.+ +++++||+.+++||.+. .|++++......
T Consensus 9 ~~~~~~~~p~~~~~---~~~p~~~~~~l~-~~Gpv~~~~~~~g~~p~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~ 82 (406)
T 1s1f_A 9 AVPPVRDWPAVDLP---GSDFDPVLTELM-REGPVTRISLPNGEGWAWLVTRHDDVRLVTNDP--RFGREAVMDRQVTRL 82 (406)
T ss_dssp CSCCEEECCCCCCC---TTCCCHHHHHHH-HHCSEEEEECSBSBSCEEEECSHHHHHHHHTCT--TEESTTTTTTTBCBS
T ss_pred hccCCCCCCCCccc---ccCchHHHHHHH-hcCCeeeeccCCCcccEEEEcCHHHHHHHHcCC--CccCCcCCCCCcccc
Confidence 67899889998873 457888888885 8999999996 6666 99999999999999863 677765432111
Q ss_pred -c-cccCCceeEecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHH-HHH
Q 048567 118 -H-ANFNYLVMATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLY-MFN 194 (352)
Q Consensus 118 -~-~~~~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~-~~t 194 (352)
. ....+.++++ .+|+.|+++||++. +.|++++++.+.+.+.++++++++.|.+ .++++|+...+. .++
T Consensus 83 ~~~~~~~~~~l~~-~dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~-------~~~~~d~~~~~~~~~~ 153 (406)
T 1s1f_A 83 APHFIPARGAVGF-LDPPDHTRLRRSVA-AAFTARGVERVRERSRGMLDELVDAMLR-------AGPPADLTEAVLSPFP 153 (406)
T ss_dssp SSSCSSCTTSGGG-CCTTHHHHHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHHHHHH-------HCSSEEHHHHTTTHHH
T ss_pred ccccccccccccc-CCchHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCccHHHHHhhHhH
Confidence 1 1112445554 46999999999996 7899999999999999999999999973 134899987775 799
Q ss_pred HHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHH
Q 048567 195 LATMSRMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEH 274 (352)
Q Consensus 195 ~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 274 (352)
+++|+. +||.+.+. ...+......++.... | . ++..+..+.+.+++.++|+++
T Consensus 154 ~~vi~~-~~G~~~~~--------~~~~~~~~~~~~~~~~--------~-~---------~~~~~~~~~~~~~~~~~i~~r 206 (406)
T 1s1f_A 154 IAVICE-LMGVPATD--------RHSMHTWTQLILSSSH--------G-A---------EVSERAKNEMNAYFSDLIGLR 206 (406)
T ss_dssp HHHHHH-HHTCCGGG--------HHHHHHHHHHHHHHHT--------T-C---------CCCHHHHTHHHHHHHHHHHTS
T ss_pred HHHHHH-HhCCCHHH--------HHHHHHHHHHHHhccC--------C-H---------HHHHHHHHHHHHHHHHHHHHH
Confidence 999998 59987643 1234343333332211 1 0 112334455666676666554
Q ss_pred HHHhccccCCCCCCccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 275 ERHAKRKSFNEHGTKDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 275 ~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
++ ....|+++.|++...+ ..++++++.+++.++++|| |||+++|+|++++|++||++|+|+++|
T Consensus 207 ~~---------~~~~d~l~~ll~~~~~----~~ls~~el~~~~~~l~~AG-eTt~~~l~~~l~~L~~~P~~~~~l~~E 270 (406)
T 1s1f_A 207 SD---------SAGEDVTSLLGAAVGR----DEITLSEAVGLAVLLQIGG-EAVTNNSGQMFHLLLSRPELAERLRSE 270 (406)
T ss_dssp CC---------SCCCSHHHHHHHHHHT----TSSCHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHSHHHHHHHHHC
T ss_pred Hh---------CCCCCHHHHHHHhhcc----cCCCHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHCHHHHHHHHhC
Confidence 21 2356999999986432 3689999999999999999 999999999999999999999999998
No 40
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding, oxidoreductase, omega-hydroxylation, iron, heme, fatty acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium tuberculosis} PDB: 2wm4_A*
Probab=99.97 E-value=4.1e-30 Score=244.56 Aligned_cols=248 Identities=13% Similarity=0.130 Sum_probs=190.7
Q ss_pred CCcHHHHHHHhhcCCeeEEeec-------CeeEEEeCCHHHHHHHHhhCCcccCCCccc--c-cccccccCCceeEecCC
Q 048567 62 LPHVSLHSLSQKYGPIIQLKFG-------LETVVVASSAEVAELILKTHDLTFASRPAL--L-AGKHANFNYLVMATAPY 131 (352)
Q Consensus 62 ~~~~~~~~~~~kYG~i~~i~~g-------~~~~vvv~~~~~i~eil~~~~~~f~~r~~~--~-~~~~~~~~g~~~~~~~~ 131 (352)
+++..+.+|. +|||||+++++ +.++++++||+.+++||.++ ..|++++.. . ....+...+.++++. +
T Consensus 45 ~p~~~~~~l~-~~Gpv~~~~~~~~~~~~~g~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~-d 121 (435)
T 2wm5_A 45 VRDGAFATLR-REAPISFWPTIELPGFVAGNGHWALTKYDDVFYASRHP-DIFSSYPNITINDQTPELAEYFGSMIVL-D 121 (435)
T ss_dssp HHHHHHHHHH-HHCSEEEECCCCC---CCCCCEEEECSHHHHHHHHHCT-TTEECSSCCSSSCCCHHHHHHHHGGGGC-C
T ss_pred ChhHHHHHHH-hcCCeEecccccccccCCCCCeEEEcCHHHHHHHHcCc-ccccCccccccCccccchhhhccccccC-C
Confidence 4677788885 79999999885 56899999999999999986 468887632 1 111111113455544 6
Q ss_pred ChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHH-HHHHHHHHHHHHHhcccccc
Q 048567 132 GPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRL-YMFNLATMSRMLLGKRYTED 210 (352)
Q Consensus 132 g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~ 210 (352)
|+.|+++||++. +.|++++++.+.+.++++++++++.|.+. .+++++|+.+.+ ..+++++|+.+ ||.+++.
T Consensus 122 g~~h~~~R~~l~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~-----~~~~~vd~~~~~~~~~~~~vi~~~-~G~~~~~- 193 (435)
T 2wm5_A 122 DPRHQRLRSIVS-RAFTPKVVARIEAAVRDRAHRLVSSMIAN-----NPDRQADLVSELAGPLPLQIICDM-MGIPKAD- 193 (435)
T ss_dssp TTHHHHHHHHHH-HTCCHHHHHHHHHHHHHHHHHHHHHHHHH-----CTTSEEEHHHHTTTHHHHHHHHHH-HTCCGGG-
T ss_pred cHHHHHHHHHhH-HhhCHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCcEehHHHHHHHHHHHHHHHH-cCCCHHH-
Confidence 999999999996 89999999999999999999999999763 234589999876 78999999999 9987643
Q ss_pred cccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCcc
Q 048567 211 NQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRKSFNEHGTKD 290 (352)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d 290 (352)
...+.+....++... .|.+ + + ..++..+..+.+.+++.++|+++++ ..+.|
T Consensus 194 -------~~~~~~~~~~~~~~~--------~p~~--~--~-~~~~~~~~~~~~~~~~~~~i~~r~~---------~~~~d 244 (435)
T 2wm5_A 194 -------HQRIFHWTNVILGFG--------DPDL--A--T-DFDEFMQVSADIGAYATALAEDRRV---------NHHDD 244 (435)
T ss_dssp -------HHHHHHHHHHHHHTT--------CTTS--C--C-CHHHHHHHHHHHHHHHHHHHHHHHH---------SCCSS
T ss_pred -------HHHHHHHHHHHhccC--------Ccch--h--h-hHHHHHHHHHHHHHHHHHHHHHHhc---------CCCCC
Confidence 223444444443321 1321 1 1 1245667778888888888887764 23479
Q ss_pred HHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 291 MVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 291 ~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
+++.|++...+ +..++++++..++.++++||+|||+++++|++++|++||++|+|+++|
T Consensus 245 ll~~ll~~~~~---~~~ls~~ei~~~~~~l~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~~E 303 (435)
T 2wm5_A 245 LTSSLVEAEVD---GERLSSREIASFFILLVVAGNETTRNAITHGVLALSRYPEQRDRWWSD 303 (435)
T ss_dssp HHHHHHHCCBT---TBCCCHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCHHHHHHHHHS
T ss_pred HHHHHHhhhcc---CCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCHHHHHHHhC
Confidence 99999986532 346999999999999999999999999999999999999999999998
No 41
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans}
Probab=99.97 E-value=2.4e-30 Score=247.27 Aligned_cols=254 Identities=12% Similarity=0.071 Sum_probs=187.0
Q ss_pred CcHHHHHHHhhcCCee--EEe-ecCeeEEEeCCHHHHHHHHhhCCcccCCCcccccccccc-------------cCCcee
Q 048567 63 PHVSLHSLSQKYGPII--QLK-FGLETVVVASSAEVAELILKTHDLTFASRPALLAGKHAN-------------FNYLVM 126 (352)
Q Consensus 63 ~~~~~~~~~~kYG~i~--~i~-~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~~~~~~~-------------~~g~~~ 126 (352)
++..+.++ ++||||+ +++ +|+.++++|++++.++++|.+. ..|++++......... ..+.+
T Consensus 47 p~~~~~~l-r~~gPV~~~~~~~~g~~~~~vvt~~~~v~~vl~~~-~~fs~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~- 123 (450)
T 3tkt_A 47 LLDRFDAL-RAEAPVAKVVAPDDEHEPFWLVSSFDGVMKASKDN-ATFLNNPKSTVFTLRVGEMMAKAITGGSPHLVES- 123 (450)
T ss_dssp HHHHHHHH-HHHCSEEEECCTTCSSCCEEEECSHHHHHHHHHCT-TTEESSSSCSSCCCHHHHHHHHHHHTSCSCSSCC-
T ss_pred chHHHHHH-HhcCCeecccccCCCCCCEEEEecHHHHHHHHhCc-ccccCCCccccccccccccccccccccccccccC-
Confidence 56677777 7899999 888 7888999999999999999765 6788876532211110 01123
Q ss_pred EecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHH-HHHHHHHHHHHHHhc
Q 048567 127 ATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRL-YMFNLATMSRMLLGK 205 (352)
Q Consensus 127 ~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~ 205 (352)
++..+|+.|+++||++. +.|++++++.+.+.++++++.+++.|.+ .++++|+...+ ..+++++|+.+ ||.
T Consensus 124 l~~~dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~-------~~~~~dl~~~~~~~~~~~vi~~l-~G~ 194 (450)
T 3tkt_A 124 LVQMDAPKHPKLRRLTQ-DWFMPKNLARLDGEIRKIANEAIDRMLG-------AGEEGDFMALVAAPYPLHVVMQI-LGV 194 (450)
T ss_dssp GGGCCTTHHHHHHHHHH-TTTSHHHHGGGHHHHHHHHHHHHHHHHH-------TCSEEEHHHHTTTHHHHHHHHHH-TTC
T ss_pred cccCCCHHHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCEeeHHHHHHHHHHHHHHHH-cCC
Confidence 44567999999999985 8999999999999999999999999975 25689998888 69999999996 997
Q ss_pred ccccccccchhhHHHHHHHHHHHHHhhcCCCccccccccccc-CccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 048567 206 RYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFL-DLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRKSFN 284 (352)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 284 (352)
..+. ...+......++. ......+|++.++ ..+...++..+..+.+.+++.++|+++++
T Consensus 195 ~~~~--------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~-------- 254 (450)
T 3tkt_A 195 PPED--------EPKMLFLTQQMFG----GQDEDMNKSGLKDLPPEQISQIVAGAVAEFERYFAGLAAERRR-------- 254 (450)
T ss_dssp CGGG--------HHHHHHHHHTTSC----CC----------------HHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred ChhH--------HHHHHHHHHHHhc----cccchhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 5432 2334333333221 1111223332222 11223456677778888888888887764
Q ss_pred CCCCccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 285 EHGTKDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 285 ~~~~~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
....|+++.|++...+ +..++++++..++.++++||+|||+++|+|++++|++||++|+|+|+|
T Consensus 255 -~~~~dll~~ll~~~~~---~~~ls~~ei~~~~~~l~~AG~dTTa~~l~~~l~~L~~~P~~~~~l~~E 318 (450)
T 3tkt_A 255 -NPTDDVATVIANAVVD---GEPMSDRDTAGYYIITASAGHDTTSASSAGAALALARDPDLFARVKAD 318 (450)
T ss_dssp -SCCSSHHHHHHTCEET---TEECCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHHHHHHHC
T ss_pred -CCCCCHHHHHHhcccc---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHC
Confidence 2356999999986542 446999999999999999999999999999999999999999999998
No 42
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron, metal-binding, oxidoreductase; HET: HEM; 1.35A {Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A* 3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Probab=99.97 E-value=8.4e-31 Score=249.20 Aligned_cols=267 Identities=16% Similarity=0.168 Sum_probs=190.0
Q ss_pred cCcCCCCCCCCCCCCCcccccccCCCCCcHHHHHHHhhcCCeeEEe--------ecCeeEEEeCCHHHHHHHHhhCCccc
Q 048567 36 RNKLNLLPPPGPKPWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLK--------FGLETVVVASSAEVAELILKTHDLTF 107 (352)
Q Consensus 36 ~~~~~~~~~PGp~~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~--------~g~~~~vvv~~~~~i~eil~~~~~~f 107 (352)
+.... .||+|.++++++......++++..+.++ ++||||+++. +|+.++++|++++.++++|.+. ..|
T Consensus 14 ~~~~~--~p~~~~~~~~~~~~~~~~~~p~~~~~~l-r~~gPv~~~~~~~g~~~~lG~~~~~vv~~~~~v~~vl~~~-~~f 89 (433)
T 3ivy_A 14 RTTVP--SPNLPPGFDFTDPAIYAERLPVAEFAEL-RSAAPIWWNGQDPGKGGGFHDGGFWAITKLNDVKEISRHS-DVF 89 (433)
T ss_dssp --------CCCCTTCCTTCHHHHTTCCCHHHHHHH-HHHCSEEEEECCTTCSTTCCSSEEEEECSHHHHHHHHHCT-TTE
T ss_pred ecccC--CCCCCCCCCCCCHHHhhcCCccHHHHHH-HhcCCEEecccccccccccCCCCEEEEecHHHHHHHHcCh-hhc
Confidence 34456 6777777777765443345688888888 8899999998 5667999999999999999654 568
Q ss_pred CCCccccccc--------ccccCCceeEecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCC
Q 048567 108 ASRPALLAGK--------HANFNYLVMATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSP 179 (352)
Q Consensus 108 ~~r~~~~~~~--------~~~~~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~ 179 (352)
++++...... .....+.+++ ..+|+.|+++||++. +.|++++++.+.+.+.+.++.+++.|..
T Consensus 90 s~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~------- 160 (433)
T 3ivy_A 90 SSYENGVIPRFKNDIAREDIEVQRFVML-NMDAPHHTRLRKIIS-RGFTPRAVGRLHDELQERAQKIAAEAAA------- 160 (433)
T ss_dssp ESTTTCSCCCCCTTCCHHHHHGGGGSGG-GCCTTHHHHHHHHHG-GGSCHHHHHTTHHHHHHHHHHHHHHHHH-------
T ss_pred cCCcccccccccccccccccccccCCcc-ccChHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHhh-------
Confidence 8776432221 1111233444 556999999999995 8999999999999999999999999964
Q ss_pred CCCCcchHHHH-HHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHH
Q 048567 180 SSTPVHLKDRL-YMFNLATMSRMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKA 258 (352)
Q Consensus 180 ~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~ 258 (352)
++++|+...+ ..+++++|+.+ ||.... ....+......+ .....|.... .+..+
T Consensus 161 -~~~~d~~~~~~~~~~~~vi~~l-~G~~~~--------~~~~~~~~~~~~--------~~~~~p~~~~-------~~~~~ 215 (433)
T 3ivy_A 161 -AGSGDFVEQVSCELPLQAIAGL-LGVPQE--------DRGKLFHWSNEM--------TGNEDPEYAH-------IDPKA 215 (433)
T ss_dssp -HCEEEHHHHTTSHHHHHHHHHH-HTCCHH--------HHHHHHHHHTTC--------SCCCCGGGTT-------CCHHH
T ss_pred -CCCeeHHHHHHHHHHHHHHHHH-cCCCHH--------HHHHHHHHHHHH--------hccCCchhhh-------HHHHH
Confidence 2369999888 99999999996 996422 122222221111 1112232211 13345
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHH
Q 048567 259 VKKKADKFYEHVLDEHERHAKRKSFNEHGTKDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSE 338 (352)
Q Consensus 259 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~ 338 (352)
..+.+.+++.++|+++++ ....|+++.|++...+ +..+++++|..++.++++||+|||+++|+|++++
T Consensus 216 ~~~~~~~~~~~~i~~r~~---------~~~~dll~~ll~~~~~---~~~ls~~ei~~~~~~ll~AG~dTTa~~l~~~l~~ 283 (433)
T 3ivy_A 216 SSAELIGYAMKMAEEKAK---------NPADDIVTQLIQADID---GEKLSDDEFGFFVVMLAVAGNETTRNSITQGMMA 283 (433)
T ss_dssp HHHHHHHHHHHHHHHC----------------CHHHHHSCC-----CCCCCHHHHHHHHHHHHHHSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc---------CCCCcHHHHHHhhhcC---CCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 566777888888877643 2356999999986542 4469999999999999999999999999999999
Q ss_pred HhhChHHHHHhhhC
Q 048567 339 LLKNPRVIQKATEE 352 (352)
Q Consensus 339 L~~~Pevq~kl~~E 352 (352)
|++||++|+|+++|
T Consensus 284 L~~~P~~~~~l~~E 297 (433)
T 3ivy_A 284 FAEHPDQWELYKKV 297 (433)
T ss_dssp HHHCHHHHHHHHHH
T ss_pred HHHCHHHHHHHHhC
Confidence 99999999999987
No 43
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET: HEM; 2.90A {Streptomyces coelicolor} PDB: 4fxb_A*
Probab=99.97 E-value=5e-30 Score=242.71 Aligned_cols=242 Identities=10% Similarity=0.087 Sum_probs=186.9
Q ss_pred CCCCcHHHHHHHhhcCCeeEEeec-CeeEEEeCCHHHHHHHHhhCCcccCCCcccccccccc-------cCCceeEecCC
Q 048567 60 GQLPHVSLHSLSQKYGPIIQLKFG-LETVVVASSAEVAELILKTHDLTFASRPALLAGKHAN-------FNYLVMATAPY 131 (352)
Q Consensus 60 ~~~~~~~~~~~~~kYG~i~~i~~g-~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~~~~~~~-------~~g~~~~~~~~ 131 (352)
..+++..+.+|+++ |||+++++| +.+++++++++.++++|.++ .|++++.......+. ..+.++ +..+
T Consensus 28 ~~dp~~~~~~l~~~-Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~d 103 (417)
T 3tyw_A 28 PFAAPAEYAALRTD-DPVARVTLPTRREAWVVTRYDDVRELLSDP--RVSADIRRPGFPALGEGEQEAGARFRPF-IRTD 103 (417)
T ss_dssp TTSCCTHHHHHHHT-CTEEEEECTTSCEEEEECCHHHHHHHHHCT--TEECCSSSTTCCCSSTTTSTTSSSCCCG-GGCC
T ss_pred ccCchHHHHHHHhh-CCeeeeecCCCCCeEEEcCHHHHHHHHcCC--CcccCCccccccccccccccccccccch-hhcC
Confidence 56788999999988 999999986 48999999999999999886 577654221111111 123344 4456
Q ss_pred ChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHH-HHHHHHHHHHHHHhcccccc
Q 048567 132 GPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRL-YMFNLATMSRMLLGKRYTED 210 (352)
Q Consensus 132 g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~ 210 (352)
|+.|+++||++. +.|++++++.+.+.++++++.+++.|.+ .++++|+...+ ..+++++|+.+ ||.+++..
T Consensus 104 g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~-------~g~~~d~~~~~~~~~~~~vi~~~-~G~~~~~~ 174 (417)
T 3tyw_A 104 APEHTRYRRMLL-PAFTVRRVRAMRPAVQARVDEILDGMLA-------AGGPVDLVSAYANAVSTSVICEL-LGIPRHDL 174 (417)
T ss_dssp HHHHHHHHHHHG-GGGCHHHHHHTHHHHHHHHHHHHHHHHH-------HCSSEEHHHHTHHHHHHHHHHHH-HTCCTTTT
T ss_pred CcHHHHHHHHHH-hhhCHHHHHHHHHHHHHHHHHHHHHHHh-------hCCCcchHHHHHHHHHHHHHHHH-hCCCHHHH
Confidence 999999999996 8999999999999999999999999975 35679999988 58999999997 99877542
Q ss_pred cccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCcc
Q 048567 211 NQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRKSFNEHGTKD 290 (352)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d 290 (352)
+ .+......++. ..+ . .++..+..+.+.+++.++|+++++ ....|
T Consensus 175 ~--------~~~~~~~~~~~---------~~~---~------~~~~~~~~~~l~~~~~~~i~~r~~---------~~~~d 219 (417)
T 3tyw_A 175 E--------FFRDVTRISGS---------RNS---T------AEQVSEALGGLFGLLGGLVAERRE---------EPRDD 219 (417)
T ss_dssp T--------HHHHHHHHHHS---------SSS---C------TTHHHHHHHHHHHHHHHHHHHHHS---------SCCSS
T ss_pred H--------HHHHHHHHHhc---------ccC---C------HHHHHHHHHHHHHHHHHHHHHHhh---------CCCCC
Confidence 2 22222222211 001 0 124556667788888888877653 23579
Q ss_pred HHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 291 MVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 291 ~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
+++.|+....+ +..++++++..++.++++||+|||+++++|++++|++||++|+|+++|
T Consensus 220 ~l~~ll~~~~~---~~~ls~~el~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~~~~l~~E 278 (417)
T 3tyw_A 220 LISKLVTDHLV---PGNVTTEQLLSTLGITINAGRETTTSMIALSTLLLLDRPELPAELRKD 278 (417)
T ss_dssp HHHHHHHHTTT---TTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHHHHC
T ss_pred HHHHHHHhccc---CCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCHHHHHHHHhC
Confidence 99999987653 336999999999999999999999999999999999999999999998
No 44
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase, metal-binding, AN biosynthesis, TIE-ROD mechanism of action; HET: HEM; 1.59A {Saccharopolyspora erythraea} PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Probab=99.97 E-value=1.4e-30 Score=246.03 Aligned_cols=255 Identities=16% Similarity=0.165 Sum_probs=186.8
Q ss_pred cCcCCCCCCCCCCCCCcccccccCCCCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCccccc
Q 048567 36 RNKLNLLPPPGPKPWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPALLA 115 (352)
Q Consensus 36 ~~~~~~~~~PGp~~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~~ 115 (352)
.++.+ .+|||+. + .+++..+.+|++ |||| ++|+.+++++++++.++++|.++ ..|++++....
T Consensus 15 ~~pl~--~~PGp~~----~------~~p~~~~~~l~~-~gpv---~~~~~~~~vv~~~~~v~~vl~~~-~~f~~~~~~~~ 77 (411)
T 2jjn_A 15 LTTID--EVPGMAD----E------TALLDWLGTMRE-KQPV---WQDRYGVWHVFRHADVQTVLRDT-ATFSSDPTRVI 77 (411)
T ss_dssp --CCC--SCCCSSC----H------HHHHHHHHHHHH-HCSE---EECTTSCEEECSHHHHHHHHHCT-TTEESCGGGGS
T ss_pred cCCCC--CCCCccc----c------cChHHHHHHHHH-hCCc---ccCCCCeEEECCHHHHHHHHcCc-ccccCcccccC
Confidence 34555 6788772 1 346677888875 9998 57777899999999999999875 36887764321
Q ss_pred ccccccCCceeEecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHH-HHHH
Q 048567 116 GKHANFNYLVMATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRL-YMFN 194 (352)
Q Consensus 116 ~~~~~~~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~-~~~t 194 (352)
......+.+++ ..+|+.|+++||++. +.|++++++.+.+.++++++.+++. . ++++|+...+ ..++
T Consensus 78 -~~~~~~~~~~~-~~~g~~~~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~--~--------~~~~d~~~~~~~~~~ 144 (411)
T 2jjn_A 78 -EGASPTPGMIH-EIDPPEHRALRKVVS-SAFTPRTISDLEPRIRDVTRSLLAD--A--------GESFDLVDVLAFPLP 144 (411)
T ss_dssp -TTCCCCTTCGG-GCCTTHHHHHHHHHH-HHSCHHHHHTTHHHHHHHHHHHHHT--S--------CSEEEHHHHTTTHHH
T ss_pred -Ccccccccccc-cCCchHHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHhc--C--------CCceeHHHHHHHHHH
Confidence 11112233444 446999999999996 8899999999999999999988876 2 2379998555 5899
Q ss_pred HHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHH
Q 048567 195 LATMSRMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEH 274 (352)
Q Consensus 195 ~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 274 (352)
+|+|+.+ ||.+.+..+ . +......++... .|. ++ .+...++..+..+.+.+++.++|+++
T Consensus 145 ~~vi~~~-fG~~~~~~~-----~---~~~~~~~~~~~~--------~~~--~~-~p~~~~~~~~~~~~~~~~~~~~i~~r 204 (411)
T 2jjn_A 145 VTIVAEL-LGLPPMDHE-----Q---FGDWSGALVDIQ--------MDD--PT-DPALAERIADVLNPLTAYLKARCAER 204 (411)
T ss_dssp HHHHHHH-HTCCSCCCS-----T---TCCHHHHHHHSC--------CSC--TT-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHH-----H---HHHHHHHHHhcc--------Ccc--cc-chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 998765422 1 222223332211 111 11 01223456677778888888888777
Q ss_pred HHHhccccCCCCCCccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 275 ERHAKRKSFNEHGTKDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 275 ~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
++ .+..|+++.|++...+ +..++++++.+++.++++||+|||+++++|++++|++||++|+|+++|
T Consensus 205 ~~---------~~~~d~l~~ll~~~~~---~~~l~~~el~~~~~~~~~AG~eTt~~~l~~~l~~L~~~P~~~~~l~~E 270 (411)
T 2jjn_A 205 RA---------DPGDDLISRLVLAEVD---GRALDDEEAANFSTALLLAGHITTTVLLGNIVRTLDEHPAHWDAAAED 270 (411)
T ss_dssp HH---------SCCSSHHHHHHHCCBT---TBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTHHHHHHHHC
T ss_pred Hh---------CCCCCHHHHHHhcccC---CCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCHHHHHHHHhC
Confidence 54 1347999999986532 446999999999999999999999999999999999999999999998
No 45
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis; HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB: 2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Probab=99.97 E-value=7.8e-30 Score=241.33 Aligned_cols=244 Identities=15% Similarity=0.181 Sum_probs=186.0
Q ss_pred CCCCCcHHHHHHHhhcCCeeEEee-cCeeEEEeCCHHHHHHHHhhCCcccCCCccc-cccccccc--CCceeEecCCChh
Q 048567 59 IGQLPHVSLHSLSQKYGPIIQLKF-GLETVVVASSAEVAELILKTHDLTFASRPAL-LAGKHANF--NYLVMATAPYGPH 134 (352)
Q Consensus 59 ~~~~~~~~~~~~~~kYG~i~~i~~-g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~-~~~~~~~~--~g~~~~~~~~g~~ 134 (352)
+..+++..+.+| ++||||+++++ |+.++++++||+.+++||.++ .|++++.. .....+.. .+.+++ ..+|+.
T Consensus 35 ~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~i~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~l~-~~dg~~ 110 (417)
T 2y5n_A 35 HGLTLAGRYGEL-QETEPVSRVRPPYGEEAWLVTRYEDVRAVLGDG--RFVRGPSMTRDEPRTRPEMVKGGLL-SMDPPE 110 (417)
T ss_dssp SSCCCCHHHHHH-HHHCSEEEEECSBSCCEEEECSHHHHHHHHTCT--TEESGGGGTSCCCBSSSSCCCCSGG-GCCTTH
T ss_pred hccCchHHHHHH-HhcCCeEeeccCCCceEEEECCHHHHHHHHcCC--CcccCccccccccccCcccccccCc-cCCchH
Confidence 346788999999 89999999997 889999999999999999875 47666532 11111111 234454 456999
Q ss_pred HHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHH-HHHHHHHHHHHHhccccccccc
Q 048567 135 WRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLY-MFNLATMSRMLLGKRYTEDNQN 213 (352)
Q Consensus 135 Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~-~~t~~vi~~~~fG~~~~~~~~~ 213 (352)
|+++||++. +.|++++++.+.+.++++++++++.|.. +++++|+...+. .+++++|+. +||.+.+.
T Consensus 111 h~~~R~~l~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~-------~~~~vdl~~~~~~~~~~~vi~~-~~G~~~~~---- 177 (417)
T 2y5n_A 111 HSRLRRLVV-KAFTARRAESLRPRAREIAHELVDQMAA-------TGQPADLVAMFARQLPVRVICE-LLGVPSAD---- 177 (417)
T ss_dssp HHHHHHHHH-HHSCHHHHHHTHHHHHHHHHHHHHHHHH-------HCSSEEHHHHTTTTHHHHHHHH-HHTCCGGG----
T ss_pred HHHHHHHHh-hhcCHHHHHHHHHHHHHHHHHHHHHHHh-------CCCCeeHHHHHHHHhHHHHHHH-HcCCCHHH----
Confidence 999999996 7899999999999999999999999964 223799998775 699999998 69986542
Q ss_pred chhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHH
Q 048567 214 NIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRKSFNEHGTKDMVD 293 (352)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~l~ 293 (352)
...+......+ .. .+. . + .++..+..+.+.+++.++|+++++. ...|+++
T Consensus 178 ----~~~~~~~~~~~----~~-----~~~----~--~--~~~~~~~~~~l~~~~~~~i~~r~~~---------~~~dll~ 227 (417)
T 2y5n_A 178 ----HDRFTRWSGAF----LS-----TAE----V--T--AEEMQEAAEQAYAYMGDLIDRRRKE---------PTDDLVS 227 (417)
T ss_dssp ----HHHHHHHHHTT----ST-----TCC----C--C--HHHHHHHHHHHHHHHHHHHHHHHHS---------CCSSHHH
T ss_pred ----HHHHHHHHHHH----hc-----ccC----C--C--HHHHHHHHHHHHHHHHHHHHHHHhC---------CCCCHHH
Confidence 12233222211 10 000 0 1 2455677778888888888877642 2469999
Q ss_pred HHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 294 VLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 294 ~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
.|++...+ +..+++++|.+++.++++||+|||+++|+|++++|++||++|+|+++|
T Consensus 228 ~ll~~~~~---~~~ls~~ei~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~~~~l~~E 283 (417)
T 2y5n_A 228 ALVQARDQ---QDSLSEQELLDLAIGLLVAGYESTTTQIADFVYLLMTRPELRRQLLDR 283 (417)
T ss_dssp HHHHCCBT---TBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHC
T ss_pred HHHhhhcc---CCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHCHHHHHHHHhC
Confidence 99986532 346999999999999999999999999999999999999999999998
No 46
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox oxidoreductase; HET: HEM; 1.75A {Pseudonocardia autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Probab=99.97 E-value=1.2e-29 Score=239.66 Aligned_cols=242 Identities=16% Similarity=0.183 Sum_probs=185.2
Q ss_pred CCCCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCcccccc---c-cccc-CCceeEecCCCh
Q 048567 59 IGQLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPALLAG---K-HANF-NYLVMATAPYGP 133 (352)
Q Consensus 59 ~~~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~~~---~-~~~~-~g~~~~~~~~g~ 133 (352)
+..+++..+.+| ++|||||++++|+.+++++++++.++++|.++. |++++..... . .+.. .+.+++ ..+|+
T Consensus 18 ~~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~~~~l~-~~~g~ 93 (411)
T 3a4g_A 18 FWQNPHPAYAAL-RAEDPVRKLALPDGPVWLLTRYADVREAFVDPR--LSKDWRHTLPEDQRADMPATPTPMMI-LMDPP 93 (411)
T ss_dssp GTTCCHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHTCTT--EESCGGGGSCGGGCTTCCSCSSCCGG-GCCTT
T ss_pred hhcCchHHHHHH-HhcCCeeeccCCCCCEEEEecHHHHHHHHhCCC--cccccccccccccccccCcccccccc-cCCch
Confidence 456788899999 899999999999899999999999999998763 8777643211 0 1111 244554 45699
Q ss_pred hHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHH-HHHHHHHHHHHHHhcccccccc
Q 048567 134 HWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRL-YMFNLATMSRMLLGKRYTEDNQ 212 (352)
Q Consensus 134 ~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~ 212 (352)
.|+++||++. +.|++++++.+.+.++++++.+++.|.+ ++++|+...+ ..+++++|+.+ ||.+.+.
T Consensus 94 ~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~--------~~~vd~~~~~~~~~~~~vi~~~-~G~~~~~--- 160 (411)
T 3a4g_A 94 DHTRLRKLVG-RSFTVRRMNELEPRITEIADGLLAGLPT--------DGPVDLMREYAFQIPVQVICEL-LGVPAED--- 160 (411)
T ss_dssp HHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHHHHHSCS--------SSCEEHHHHTTTTHHHHHHHHH-HTCCGGG---
T ss_pred HHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHHHh--------cCCccHHHHHHHHhHHHHHHHH-hCCCHHH---
Confidence 9999999996 7899999999999999999999998843 2579997555 68999999975 9987642
Q ss_pred cchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHH
Q 048567 213 NNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRKSFNEHGTKDMV 292 (352)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~l 292 (352)
...+......++. . .| + ++..+..+.+.+++.++|+++++. ...|++
T Consensus 161 -----~~~~~~~~~~~~~----~-----~p-------~---~~~~~~~~~~~~~~~~~i~~r~~~---------~~~d~l 207 (411)
T 3a4g_A 161 -----RDDFSAWSSVLVD----D-----SP-------A---DDKNAAMGKLHGYLSDLLERKRTE---------PDDALL 207 (411)
T ss_dssp -----HHHHHHHHHHHTT----S-----SC-------T---TTHHHHHHHHHHHHHHHHHHHHHS---------CCSSHH
T ss_pred -----HHHHHHHHHHHhc----c-----CC-------H---HHHHHHHHHHHHHHHHHHHHHHhC---------CCCCHH
Confidence 1233333332211 0 12 1 133456667788888888877542 246999
Q ss_pred HHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 293 DVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 293 ~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
+.|++..+++ +..+++++|.+++.++++||+|||+++|+|++++|++||++|+|+++|
T Consensus 208 ~~ll~~~~~~--~~~ls~~ei~~~~~~l~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~~E 265 (411)
T 3a4g_A 208 SSLLAVSDED--GDRLSQEELVAMAMLLLIAGHETTVNLIGNGVLALLTHPDQRKLLAED 265 (411)
T ss_dssp HHHHHCCCTT--CCCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHTCHHHHHHHHHC
T ss_pred HHHHHhhccC--CCCCCHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHhCHHHHHHHhcC
Confidence 9999865322 446999999999999999999999999999999999999999999998
No 47
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM EDO; 1.37A {Citrobacter braakii} PDB: 4fmx_A* 4fyz_A* 1t2b_A* 3bdz_A* 3be0_A*
Probab=99.97 E-value=6.3e-30 Score=240.52 Aligned_cols=241 Identities=12% Similarity=0.079 Sum_probs=185.7
Q ss_pred CCCCcHHHHHHHhhc--CCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCcccccccccccCCceeEecCCChhHHH
Q 048567 60 GQLPHVSLHSLSQKY--GPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPALLAGKHANFNYLVMATAPYGPHWRQ 137 (352)
Q Consensus 60 ~~~~~~~~~~~~~kY--G~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~~~~~~~~~g~~~~~~~~g~~Wk~ 137 (352)
.++++..+.+|+++| |||+++++|+ +++++++++.++++| ++.+.|++++....... ...+..+++..+|+.|++
T Consensus 18 ~~~p~~~~~~l~~~Y~~Gpv~~~~~~~-~~~vv~~~~~v~~vl-~~~~~f~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~ 94 (398)
T 4fb2_A 18 DGTPHAFFEALRDEAETTPIGWSEAYG-GHWVVAGYKEIQAVI-QNTKAFSNKGVTFPRYE-TGEFELMMAGQDDPVHKK 94 (398)
T ss_dssp TSSSHHHHHHHHHHHTTCSEEEECGGG-CEEEECSHHHHHHHH-TCCSSEEGGGCSSSCC-----CCCTTTTCCTTHHHH
T ss_pred hcChhHHHHHHHhcCCCCCeEEecCCC-CEEEEccHHHHHHHH-hChhhccCCcccccCCC-CcccccCcccCCchHHHH
Confidence 467889999999999 9999999886 589999999999999 45567887765332111 112223345567999999
Q ss_pred hhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHH-HHHHHHHHHHHHHhcccccccccchh
Q 048567 138 TRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRL-YMFNLATMSRMLLGKRYTEDNQNNIV 216 (352)
Q Consensus 138 ~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~~~ 216 (352)
+||++. +.|++++++.+.+.++++++.+++.|.+ ++++|+...+ ..+++++++. +||.+.+.
T Consensus 95 ~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~--------~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~------- 157 (398)
T 4fb2_A 95 YRQLVA-KPFSPEATDLFTEQLRQSTNDLIDARIE--------LGEGDAATWLANEIPARLTAI-LLGLPPED------- 157 (398)
T ss_dssp HHHHHH-TTTCHHHHHTTHHHHHHHHHHHHHTTTT--------TTEEEHCCCCCTTHHHHHHHH-HTTSCGGG-------
T ss_pred HHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHhh--------cCCccHHHHHHHHHHHHHHHH-HcCCCHHH-------
Confidence 999985 8999999999999999999999988743 2358865544 6899999999 68976532
Q ss_pred hHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHH
Q 048567 217 TAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRKSFNEHGTKDMVDVLL 296 (352)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~l~~lL 296 (352)
...+......++. |. . .++..+..+.+.+++.++|+++++ ..+.|+++.|+
T Consensus 158 -~~~~~~~~~~~~~-----------~~---~-----~~~~~~~~~~~~~~~~~~i~~r~~---------~~~~d~l~~ll 208 (398)
T 4fb2_A 158 -GDTYRRWVWAITH-----------VE---N-----PEEGAEIFAELVAHARTLIAERRT---------NPGNDIMSRVI 208 (398)
T ss_dssp -HHHHHHHHHHHHH-----------CC---C-----HHHHHHHHHHHHHHHHHHHHHHHH---------SCCSSHHHHHH
T ss_pred -HHHHHHHHHHHhc-----------CC---C-----HHHHHHHHHHHHHHHHHHHHHHHh---------CCCCCHHHHHH
Confidence 2344444443332 10 0 134566777888888888887764 23579999999
Q ss_pred hccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 297 QLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 297 ~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
+...+ +..++++++..++.++++||+|||+++++|++++|++||++|+|+++|
T Consensus 209 ~~~~~---~~~l~~~~i~~~~~~l~~AG~~Tt~~~l~~~l~~L~~~P~~~~~l~~E 261 (398)
T 4fb2_A 209 MSKID---GESLSEDDLIGFFTILLLGGIDNTARFLSSVFWRLAWDIELRRRLIAH 261 (398)
T ss_dssp HCCBT---TBCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHC
T ss_pred HcccC---CCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCHHHHHHHHhC
Confidence 87542 446999999999999999999999999999999999999999999998
No 48
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus subtilis} SCOP: a.104.1.0 PDB: 3ejd_B* 3eje_B*
Probab=99.97 E-value=1.5e-29 Score=238.40 Aligned_cols=246 Identities=15% Similarity=0.175 Sum_probs=183.9
Q ss_pred CCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCccccccc---cc-ccCCceeEecCCChhHH
Q 048567 61 QLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPALLAGK---HA-NFNYLVMATAPYGPHWR 136 (352)
Q Consensus 61 ~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~~~~---~~-~~~g~~~~~~~~g~~Wk 136 (352)
.+++..+.+| ++||||+++++|+.+++++++++.++++|.++ ..|++++...... .+ ...+.++ +..+|+.|+
T Consensus 13 ~~p~~~~~~~-r~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~g~~h~ 89 (404)
T 3ejb_B 13 KNPYSFYDTL-RAVHPIYKGSFLKYPGWYVTGYEETAAILKDA-RFKVRTPLPESSTKYQDLSHVQNQMM-LFQNQPDHR 89 (404)
T ss_dssp HCHHHHHHHH-HHHCSEEEEEETTEEEEEECCHHHHHHHHHCT-TEECCCSSCTTCCTTHHHHHHHHTSG-GGCCTTHHH
T ss_pred cCchHHHHHH-HhhCCEeeccCCCCCEEEEecHHHHHHHHhCc-ccccCcccccccccccchhhhhhcch-hhcCCchHH
Confidence 4567778777 58999999999999999999999999999987 5777776422111 11 1123344 445699999
Q ss_pred HhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHH-HHHHHHHHHHHHhcccccccccch
Q 048567 137 QTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLY-MFNLATMSRMLLGKRYTEDNQNNI 215 (352)
Q Consensus 137 ~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~-~~t~~vi~~~~fG~~~~~~~~~~~ 215 (352)
++||++. +.|++++++.+.+.++++++.+++.|.+ ++++|+...+. .+++++++.+ ||.+.+.
T Consensus 90 ~~Rr~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~--------~~~~d~~~~~~~~~~~~vi~~~-~G~~~~~------ 153 (404)
T 3ejb_B 90 RLRTLAS-GAFTPRTTESYQPYIIETVHHLLDQVQG--------KKKMEVISDFAFPLASFVIANI-IGVPEED------ 153 (404)
T ss_dssp HHHHHHH-GGGSHHHHHTTHHHHHHHHHHHHHTTTT--------TSEEEHHHHTHHHHHHHHHHHH-HTCCGGG------
T ss_pred HHHHHHH-hhcCHHHHHHHHHHHHHHHHHHHHHhhh--------cCCcchHHHHHHHHHHHHHHHH-cCCCHHH------
Confidence 9999995 8999999999999999999999988743 35789866554 5999999985 8976542
Q ss_pred hhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHH
Q 048567 216 VTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRKSFNEHGTKDMVDVL 295 (352)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~l~~l 295 (352)
...+......+..... .|+. ....++..+..+.+.+++.++++++++ ....|+++.|
T Consensus 154 --~~~~~~~~~~~~~~~~-------~p~~-----~~~~~~~~~~~~~~~~~~~~~i~~r~~---------~~~~d~l~~l 210 (404)
T 3ejb_B 154 --REQLKEWAASLIQTID-------FTRS-----RKALTEGNIMAVQAMAYFKELIQKRKR---------HPQQDMISML 210 (404)
T ss_dssp --HHHHHHHHHHHHGGGS-------TTCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHH---------SCCSSHHHHH
T ss_pred --HHHHHHHHHHHHHhcc-------CCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHh---------CCcchHHHHH
Confidence 2233333333322111 1321 112355667777888888888887763 2457999999
Q ss_pred HhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 296 LQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 296 L~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
+ ...+ +..++++++..++.++++||+|||+++|+|++++|++||++|+|+++|
T Consensus 211 l-~~~~---~~~ls~~el~~~~~~l~~AG~dTta~~l~~~l~~L~~~P~~~~~l~~E 263 (404)
T 3ejb_B 211 L-KGRE---KDKLTEEEAASTCILLAIAGHETTVNLISNSVLCLLQHPEQLLKLREN 263 (404)
T ss_dssp H-HC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHC
T ss_pred H-hccc---CCCCCHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHCHHHHHHHHhC
Confidence 9 4332 346999999999999999999999999999999999999999999998
No 49
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin, oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A* 1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Probab=99.97 E-value=1.4e-29 Score=238.72 Aligned_cols=242 Identities=16% Similarity=0.177 Sum_probs=185.8
Q ss_pred CCCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCccc--c----ccc---cc-cc----CCce
Q 048567 60 GQLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPAL--L----AGK---HA-NF----NYLV 125 (352)
Q Consensus 60 ~~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~--~----~~~---~~-~~----~g~~ 125 (352)
..+++..+.+| ++|||||++++|+.+++++++|+.++++|.++ .|++++.. . ... .+ .. .+.+
T Consensus 13 ~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (404)
T 1z8o_A 13 HVDWYRTYAEL-RETAPVTPVRFLGQDAWLVTGYDEAKAALSDL--RLSSDPKKKYPGVEVEFPAYLGFPEDVRNYFATN 89 (404)
T ss_dssp TSSHHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHHCT--TEECCTTCCCTTCCCCCGGGTTCCHHHHHHHSSS
T ss_pred ccCcHHHHHHH-HhcCCeeeecCCCceEEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccchhhhcccc
Confidence 45678889999 99999999999999999999999999999876 57776542 1 110 11 11 2344
Q ss_pred eEecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHH-HHHHHHHHHHHHHh
Q 048567 126 MATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRL-YMFNLATMSRMLLG 204 (352)
Q Consensus 126 ~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG 204 (352)
++ ..+|+.|+++||++. +.|++++++.+.+.+.++++.+++.|. .++++|+...+ ..+++++|+.+ ||
T Consensus 90 l~-~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~--------~~~~~d~~~~~~~~~~~~vi~~~-~G 158 (404)
T 1z8o_A 90 MG-TSDPPTHTRLRKLVS-QEFTVRRVEAMRPRVEQITAELLDEVG--------DSGVVDIVDRFAHPLPIKVICEL-LG 158 (404)
T ss_dssp GG-GCCTTHHHHHHHHHH-TTSCHHHHHHTHHHHHHHHHHHHHTSC--------SSSEEEHHHHTTTHHHHHHHHHH-TT
T ss_pred cc-cCCCcHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHhhh--------hcCCcchHHHHhHHHHHHHHHHH-hC
Confidence 44 456999999999996 899999999999999999999988873 24589998766 58999999985 99
Q ss_pred cccccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 048567 205 KRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRKSFN 284 (352)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 284 (352)
.+.+..+ .+......++. . ..| . .++..+..+.+.+++.++|+++++.
T Consensus 159 ~~~~~~~--------~~~~~~~~~~~----~----~~p--------~-~~~~~~~~~~~~~~~~~~i~~r~~~------- 206 (404)
T 1z8o_A 159 VDEKYRG--------EFGRWSSEILV----M----DPE--------R-AEQRGQAAREVVNFILDLVERRRTE------- 206 (404)
T ss_dssp CCGGGTT--------THHHHHHHHHC----C----CGG--------G-HHHHHHHHHHHHHHHHHHHHHHHHS-------
T ss_pred CCHHHHH--------HHHHHHHHHhc----c----CCh--------h-HHHHHHHHHHHHHHHHHHHHHHHhC-------
Confidence 8764321 23333333321 0 012 1 3455667778888888888877642
Q ss_pred CCCCccHHHHHHhc-cCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 285 EHGTKDMVDVLLQL-ADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 285 ~~~~~d~l~~lL~~-~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
...|+++.|++. ..+ +..++++++.+++.++++||+|||+++++|++++|++||++|+|+++|
T Consensus 207 --~~~dll~~ll~~~~~~---~~~l~~~ei~~~~~~~~~AG~~Tt~~~l~~~l~~L~~~P~~~~~l~~E 270 (404)
T 1z8o_A 207 --PGDDLLSALIRVQDDD---DGRLSADELTSIALVLLLAGFEASVSLIGIGTYLLLTHPDQLALVRRD 270 (404)
T ss_dssp --CCSSHHHHHHHCEETT---TEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHC
T ss_pred --CCCCHHHHHHhhhccc---CCCCCHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHCHHHHHHHHhC
Confidence 346999999986 432 346999999999999999999999999999999999999999999998
No 50
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A {Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A* 1pkf_A*
Probab=99.97 E-value=9.9e-30 Score=240.80 Aligned_cols=248 Identities=15% Similarity=0.144 Sum_probs=187.8
Q ss_pred CCCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCcc-----cc---cccccccC-CceeEecC
Q 048567 60 GQLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPA-----LL---AGKHANFN-YLVMATAP 130 (352)
Q Consensus 60 ~~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~-----~~---~~~~~~~~-g~~~~~~~ 130 (352)
..+++..+.+| ++||||++ + |+.+++++++++.++++|.++. |++|+. .. ....+... +.++++ .
T Consensus 25 ~~~p~~~~~~l-~~~Gpv~~-~-~~~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~ 98 (419)
T 1q5d_A 25 AEDPFPAIERL-REATPIFY-W-DEGRSWVLTRYHDVSAVFRDER--FAVSREEWESSAEYSSAIPELSDMKKYGLFG-L 98 (419)
T ss_dssp TTCCHHHHHHH-HHHCSEEE-E-TTTTEEEECSHHHHHHHHTCTT--EECCGGGSTTHHHHHHSSGGGHHHHHHSTTT-S
T ss_pred hhChHHHHHHH-HhhCCccc-c-CCCCEEEEecHHHHHHHHcCCC--ccccccccccccccccccchhhhhccccccc-C
Confidence 45688888888 79999998 5 6678999999999999998874 888762 11 11111101 334444 4
Q ss_pred CChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHH-HHHHHHHHHHHHHhccccc
Q 048567 131 YGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRL-YMFNLATMSRMLLGKRYTE 209 (352)
Q Consensus 131 ~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~ 209 (352)
+|+.|+++||++. +.|++++++.+.+.++++++++++.|.+ . +++|+...+ ..+++|+|+.+ ||.+.+.
T Consensus 99 ~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~-------~-~~~d~~~~~~~~~~~~vi~~~-fG~~~~~ 168 (419)
T 1q5d_A 99 PPEDHARVRKLVN-PSFTSRAIDLLRAEIQRTVDQLLDARSG-------Q-EEFDVVRDYAEGIPMRAISAL-LKVPAEC 168 (419)
T ss_dssp CHHHHHHHHHHHG-GGGSHHHHGGGHHHHHHHHHHHHHHHTT-------S-SCEETTTTTGGGSHHHHHHHH-TTCCGGG
T ss_pred CchHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHHHh-------c-CCCCHHHHHHHHHHHHHHHHH-hCCCHHH
Confidence 6999999999985 8999999999999999999999999853 2 379988654 89999999998 9987643
Q ss_pred ccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCc
Q 048567 210 DNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRKSFNEHGTK 289 (352)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 289 (352)
...+......+..... ...+|+.. ...++..+..+.+.+++.++|+++++. ...
T Consensus 169 --------~~~~~~~~~~~~~~~~----~~~~P~~~-----~~~~~~~~~~~~~~~~~~~~i~~r~~~---------~~~ 222 (419)
T 1q5d_A 169 --------DEKFRRFGSATARALG----VGLVPRVD-----EETKTLVASVTEGLALLHGVLDERRRN---------PLE 222 (419)
T ss_dssp --------HHHHHHHHHHHHHHTT----TTTSSCCC-----SCHHHHHHHHHHHHHHHHHHHHHHHHS---------CCS
T ss_pred --------HHHHHHHHHHHHHhcc----cccccCCh-----HHHHHHHHHHHHHHHHHHHHHHHHHhC---------CCC
Confidence 1234444444443221 11244321 123556677788888888888877642 234
Q ss_pred -cHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 290 -DMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 290 -d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
|+++.|++...+ +..++++++.+++.++++||+|||+++|+|++++|++||++|+|+++|
T Consensus 223 ~dll~~ll~~~~~---~~~l~~~ei~~~~~~l~~AG~dTta~~l~~~l~~L~~~P~~~~~l~~E 283 (419)
T 1q5d_A 223 NDVLTMLLQAEAD---GSRLSTKELVALVGAIIAAGTDTTIYLIAFAVLNLLRSPEALELVKAE 283 (419)
T ss_dssp SCHHHHHHHHHHS---STTCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHHHHHHHC
T ss_pred CCHHHHHHhhhcc---CCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCHHHHHHHHhC
Confidence 999999986432 346999999999999999999999999999999999999999999998
No 51
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105, oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea recticatena}
Probab=99.97 E-value=9.2e-30 Score=240.56 Aligned_cols=255 Identities=16% Similarity=0.137 Sum_probs=188.6
Q ss_pred CCCCCCCCCcccccccCCCCCcHHHHHHHhhcCCeeEEee-cCeeEEEeCCHHHHHHHHhhCCcccCCCccccccc---c
Q 048567 43 PPPGPKPWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKF-GLETVVVASSAEVAELILKTHDLTFASRPALLAGK---H 118 (352)
Q Consensus 43 ~~PGp~~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~-g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~~~~---~ 118 (352)
..|||.. |+- ..+..+++..+.+|. +||||+++++ |+.+++++++|+.++++|.++ .|++++...... .
T Consensus 8 ~~~g~~~-~~~---~~~~~~p~~~~~~l~-~~Gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~ 80 (413)
T 2z36_A 8 ELAGLEL-PVE---RGCPFAPPAAYERLR-ERAPINKVRLTSGGQAWWVSGHEEARAVLADG--RFSSDKRKDGFPLFTL 80 (413)
T ss_dssp --CCCEE-CCC---CCBTTBCCHHHHHHH-HHCSEEEEEETTSCEEEEECSHHHHHHHHHCT--TEECCTTSTTCCCSSC
T ss_pred HhccccC-CCC---cccccCchHHHHHHH-HcCCeeEeecCCCceEEEEecHHHHHHHHcCC--CcccCccccCcccccc
Confidence 4567653 432 234467888899997 8999999997 889999999999999999874 577765321111 0
Q ss_pred c-cc-----CCce-eEecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHH
Q 048567 119 A-NF-----NYLV-MATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLY 191 (352)
Q Consensus 119 ~-~~-----~g~~-~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~ 191 (352)
. .. .+.+ ++ ..+|+.|+++||++. +.|++++++++.+.++++++.+++.|.+ ..++++|+...+.
T Consensus 81 ~~~~~~~~~~~~~~l~-~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~------~~~~~~d~~~~~~ 152 (413)
T 2z36_A 81 DAATLQQLRSQPPLML-GMDGAEHSAARRPVI-GEFTVKRLAALRPRIQDIVDHFIDDMLA------TDQRPVDLVQALS 152 (413)
T ss_dssp CHHHHHHHTTSCCCGG-GCCHHHHHHHHHHHH-GGGSHHHHHHHHHHHHHHHHHHHHHHTT------CSCSSEEHHHHTT
T ss_pred cccccccccccccccc-ccCchHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHH------hcCCCccHHHHHh
Confidence 1 11 2445 44 456999999999996 7899999999999999999999999853 1256899987665
Q ss_pred -HHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHH
Q 048567 192 -MFNLATMSRMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHV 270 (352)
Q Consensus 192 -~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 270 (352)
.+++++|+.+ ||.+.+. ...+......+ . .. . .+ ++..+..+.+.+++.++
T Consensus 153 ~~~~~~vi~~~-~G~~~~~--------~~~~~~~~~~~----~--------~~---~-~~---~~~~~~~~~~~~~~~~~ 204 (413)
T 2z36_A 153 LPVPSLVICEL-LGVPYTD--------HDFFQSRTTMM----V--------SR---T-SM---EDRRRAFAELRAYIDDL 204 (413)
T ss_dssp THHHHHHHHHH-HTCCGGG--------HHHHHHHHHHT----T--------CS---S-CH---HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHH-hCCCHHH--------HHHHHHHHHHH----h--------cc---c-Cc---HHHHHHHHHHHHHHHHH
Confidence 6999999995 9986542 12232222111 0 00 0 01 34556667778888888
Q ss_pred HHHHHHHhccccCCCCCCccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhh
Q 048567 271 LDEHERHAKRKSFNEHGTKDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKAT 350 (352)
Q Consensus 271 i~~~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~ 350 (352)
|+++++ ....|+++.|++...+ +..++++++..++.++++||+|||+++|+|++++|++||++|+|++
T Consensus 205 i~~r~~---------~~~~dll~~ll~~~~~---~~~ls~~ei~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~~~~l~ 272 (413)
T 2z36_A 205 ITRKES---------EPGDDLFSRQIARQRQ---EGTLDHAGLVSLAFLLLTAGHETTANMISLGVVGLLSHPEQLTVVK 272 (413)
T ss_dssp HHHHHS---------SCCSSHHHHHHHHHHH---HSCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHh---------CCCCCHHHHHHHhhcC---CCCCCHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 877652 2346999999986421 3469999999999999999999999999999999999999999999
Q ss_pred hC
Q 048567 351 EE 352 (352)
Q Consensus 351 ~E 352 (352)
+|
T Consensus 273 ~E 274 (413)
T 2z36_A 273 AN 274 (413)
T ss_dssp HC
T ss_pred hC
Confidence 98
No 52
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A*
Probab=99.97 E-value=2.3e-31 Score=255.60 Aligned_cols=277 Identities=15% Similarity=0.120 Sum_probs=177.8
Q ss_pred cCcCCCCCCCCCCC-CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCccc-
Q 048567 36 RNKLNLLPPPGPKP-WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPAL- 113 (352)
Q Consensus 36 ~~~~~~~~~PGp~~-~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~- 113 (352)
+++.+ .||||++ +|++||++++..+++..+.+|+++|||||++++|+.+++++++|+++++++.++.. |+.++..
T Consensus 14 ~~~~~--~pPgp~~~~P~iG~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~-~~~~~~~~ 90 (475)
T 3b98_A 14 TRRRN--EPPLDKGMIPWLGHALEFGKDAAKFLTRMKEKHGDIFTVRAAGLYITVLLDSNCYDAVLSDVAS-LDQTSYAQ 90 (475)
T ss_dssp CCCTT--CCCEECCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETTEEEEEECCTTTHHHHHTCTTT-EESHHHHH
T ss_pred ccCCC--CCCCCCCCcchHHhHHHHhhCHHHHHHHHHHHhCCeEEEEECCceEEEEeCHHHHHHHHcCccc-CCchHHHH
Confidence 34456 8999998 99999999886678899999999999999999999999999999999999987642 4333211
Q ss_pred ccccccccCCceeEecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHH
Q 048567 114 LAGKHANFNYLVMATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLYMF 193 (352)
Q Consensus 114 ~~~~~~~~~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~~~ 193 (352)
...... .|.++++ .+|+.| |+++. +.|++++++.+.+.+.+++..+++.+.... .......+++...+..+
T Consensus 91 ~~~~~~--~g~~~~~-~~~~~~---R~~~~-~~f~~~~l~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~ 161 (475)
T 3b98_A 91 VLMKRI--FNMILPS-HNPESE---KKRAE-MHFQGASLTQLSNSMQNNLRLLMTPSEMGL--KTSEWKKDGLFNLCYSL 161 (475)
T ss_dssp HHHHHT--TCCCCTT-CCHHHH---HHHHH-HHTSHHHHHHHHHHHHHHHHHHSSTTTTTC--SSCSCEEEEHHHHHHHH
T ss_pred HHHHHH--hCCCCCC-CChHHH---HHHHH-HHcChhhHHHHHHHHHHHHHHHHhhccccc--CCCCceeehHHHHHHHH
Confidence 111111 1334433 346666 45554 689999999999999988888776653210 00011245666666666
Q ss_pred HHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCcc-chHHHHHHHHHHHHHHHHHHHH
Q 048567 194 NLATMSRMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQ-GNVKRMKAVKKKADKFYEHVLD 272 (352)
Q Consensus 194 t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~-~~~~~~~~~~~~~~~~~~~~i~ 272 (352)
++++++...||.+.. ....+......+.. +.+.+|++.+...+ ...++..++.+.+ ...+.
T Consensus 162 ~~~~~~~~~~g~~~~--------~~~~~~~~~~~~~~------~~~~~p~l~~~~~~~~~~~~~~~~~~~~----~~~~~ 223 (475)
T 3b98_A 162 LFKTGYLTVFGAENN--------NSAALTQIYEEFRR------FDKLLPKLARTTVNKEEKQIASAAREKL----WKWLT 223 (475)
T ss_dssp HHHHHHHHHHCCTTS--------CHHHHHHHHHHHHH------HHHHHHHHHTTCCCHHHHHHHHHHHHHH----HHHHS
T ss_pred HHHHhhhheeCCccc--------cchhcHHHHHHHHH------HHhhhHHHHHHhcChhhhHHHHHHHHHH----HHHHH
Confidence 666666666764311 11222222222211 11235543221011 1122222222222 11121
Q ss_pred HHHHHhccccCCCCCCccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 273 EHERHAKRKSFNEHGTKDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 273 ~~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
+ .. . .......|+++.+++..++ ++.++++++. ++.++++||+|||+++++|++++|++||++|+|+|+|
T Consensus 224 ~---~~-~--~~~~~~~d~l~~ll~~~~~---~~~~~~~~i~-~~~~~l~ag~~TTa~~l~~~l~~L~~~P~~~~~l~~E 293 (475)
T 3b98_A 224 P---SG-L--DRKPREQSWLGSYVKQLQD---EGIDAEMQRR-AMLLQLWVTQGNAGPAAFWVMGYLLTHPEALRAVREE 293 (475)
T ss_dssp C---TT-S--CCCCCTTSHHHHHHHHHHH---TTCCHHHHHH-HHHHHHHHHHSSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred H---HH-h--hccccccHHHHHHHHHHHH---cCCCHHHHHH-HHHHHHHHccccHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 1 11 1 1224567999999976432 2257889998 8999999999999999999999999999999999987
No 53
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide antibiotics, 12- and 14- carbon macrolactone monooxygenase, heme; HET: HEM; 1.92A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.97 E-value=4.4e-29 Score=235.78 Aligned_cols=244 Identities=15% Similarity=0.127 Sum_probs=184.5
Q ss_pred cCCCCCcHHHHHHHhhcCCeeEEee-cCeeEEEeCCHHHHHHHHhhCCcccCCCc-cccccc--cccc--------C-Cc
Q 048567 58 LIGQLPHVSLHSLSQKYGPIIQLKF-GLETVVVASSAEVAELILKTHDLTFASRP-ALLAGK--HANF--------N-YL 124 (352)
Q Consensus 58 ~~~~~~~~~~~~~~~kYG~i~~i~~-g~~~~vvv~~~~~i~eil~~~~~~f~~r~-~~~~~~--~~~~--------~-g~ 124 (352)
.+..+++..+.+| ++||||+++++ |+.++++++||++++++|.++. +++++ ...... .... . +.
T Consensus 14 ~~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (411)
T 1gwi_A 14 PFVTDLDGESARL-RAAGPLAAVELPGGVPVWAVTHHAEAKALLTDPR--LVKDINVWGAWRRGEIPADWPLIGLANPGR 90 (411)
T ss_dssp TTCSCHHHHHHHH-HHTCSEEEEEETTTEEEEEECSHHHHHHHHTCTT--EECCGGGCHHHHTTCSCTTCTTHHHHSCCS
T ss_pred cccCChHHHHHHH-HHhCCeeeeecCCCccEEEEeCHHHHHHHHcCCc--cccCcccccccccccCCcccchhhhhcccc
Confidence 3445778889999 99999999997 8899999999999999998763 44443 111000 0000 1 23
Q ss_pred eeEecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHH-HHHHHHHHHHHH
Q 048567 125 VMATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLY-MFNLATMSRMLL 203 (352)
Q Consensus 125 ~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~-~~t~~vi~~~~f 203 (352)
++ +..+|+.|+++||++. +.|++++++.+.+.++++++.+++.|.+ .++++|+...+. .+++++|+. +|
T Consensus 91 ~l-~~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~-------~~~~~d~~~~~~~~~~~~vi~~-~~ 160 (411)
T 1gwi_A 91 SM-LTVDGAEHRRLRTLVA-QALTVRRVEHMRGRITELTDRLLDELPA-------DGGVVDLKAAFAYPLPMYVVAD-LM 160 (411)
T ss_dssp SG-GGCCHHHHHHHHHHHT-TTSCHHHHHTTHHHHHHHHHHHHHTSCC-------SCCCEEHHHHTTTHHHHHHHHH-HH
T ss_pred cc-ccCCcHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHHHH-------cCCCcchHHHHhhHHHHHHHHH-Hh
Confidence 44 4557999999999996 8999999999999999999999888741 356899998887 599999996 69
Q ss_pred hcccccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 048567 204 GKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRKSF 283 (352)
Q Consensus 204 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 283 (352)
|.+.+. ...+......++.. . . . .++..+..+.+.+++.++|+++++.
T Consensus 161 G~~~~~--------~~~~~~~~~~~~~~------~--------~--~--~~~~~~~~~~~~~~~~~~i~~r~~~------ 208 (411)
T 1gwi_A 161 GIEEAR--------LPRLKVLFEKFFST------Q--------T--P--PEEVVATLTELASIMTDTVAAKRAA------ 208 (411)
T ss_dssp TCCGGG--------HHHHHHHHHHHHCT------T--------S--C--HHHHHHHHHHHHHHHHHHHHHHHHS------
T ss_pred CCCHHH--------HHHHHHHHHHHhcc------C--------C--C--hHHHHHHHHHHHHHHHHHHHHHHhC------
Confidence 986532 22344433333210 0 1 1 1345666777888888888876531
Q ss_pred CCCCCccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 284 NEHGTKDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 284 ~~~~~~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
...|+++.|++..++ +..++++++.+++.++++||+|||+++|+|++++|++||++|+|+++|
T Consensus 209 ---~~~d~l~~ll~~~~~---~~~l~~~~i~~~~~~~~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~~e 271 (411)
T 1gwi_A 209 ---PGDDLTSALIQASEN---GDHLTDAEIVSTLQLMVAAGHETTISLIVNAVVNLSTHPEQRALVLSG 271 (411)
T ss_dssp ---CCSSHHHHHHHCCBT---TBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTT
T ss_pred ---CCCCHHHHHHHhccc---CCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhChHHHHHHHcC
Confidence 247999999987542 346999999999999999999999999999999999999999999987
No 54
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM; 1.60A {Mycobacterium tuberculosis}
Probab=99.97 E-value=8.2e-29 Score=232.92 Aligned_cols=241 Identities=15% Similarity=0.150 Sum_probs=183.7
Q ss_pred CCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCcccccccccccCCceeEecCCChhHHHhhh
Q 048567 61 QLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPALLAGKHANFNYLVMATAPYGPHWRQTRK 140 (352)
Q Consensus 61 ~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~~~~~~~~~g~~~~~~~~g~~Wk~~Rr 140 (352)
.+++..+.+|++ |||||+ ++. +++++++|+.++++|.++. .|++++... .... .+.+++ ..+|+.|+++||
T Consensus 18 ~~p~~~~~~l~~-~Gpv~~--~~~-~~vvv~~~~~v~~vl~~~~-~f~~~~~~~-~~~~--~~~~l~-~~~g~~h~~~R~ 88 (398)
T 2xkr_A 18 REARAAYRWMRA-NQPVFR--DRN-GLAAASTYQAVIDAERQPE-LFSNAGGIR-PDQP--ALPMMI-DMDDPAHLLRRK 88 (398)
T ss_dssp TTHHHHHHHHHH-HCSEEE--CTT-CCEEECSHHHHHHHHTCTT-TEESTTCSS-TTSC--CCSSGG-GCCTTHHHHHHH
T ss_pred cChhHHHHHHHh-cCCeee--cCC-CeEEEecHHHHHHHHhCcc-cccCccccC-Cccc--cccccc-ccCchHHHHHHH
Confidence 467788888886 999994 454 7899999999999998754 688776432 1111 233444 446999999999
Q ss_pred hhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHH-HHHHHHHHHHHHHHhcccccccccchhhHH
Q 048567 141 TFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDR-LYMFNLATMSRMLLGKRYTEDNQNNIVTAK 219 (352)
Q Consensus 141 ~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~-~~~~t~~vi~~~~fG~~~~~~~~~~~~~~~ 219 (352)
++. +.|++++++.+.+.++++++++++.|.+ ++++|+... ...+++|+|+.+ ||.+.+. ..
T Consensus 89 ~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~--------~~~~d~~~~~~~~~~~~vi~~~-fG~~~~~--------~~ 150 (398)
T 2xkr_A 89 LVN-AGFTRKRVKDKEASIAALCDTLIDAVCE--------RGECDFVRDLAAPLPMAVIGDM-LGVRPEQ--------RD 150 (398)
T ss_dssp HHG-GGSCHHHHHTTHHHHHHHHHHHHHTTTT--------TSEEEHHHHTTTHHHHHHHHHH-HTCCGGG--------HH
T ss_pred Hhh-hhhCHHHHHHHHHHHHHHHHHHHHhhhh--------cCCccHHHHHHHHHHHHHHHHH-hCCCHHH--------HH
Confidence 995 8999999999999999999999988743 237999855 568999999998 9987643 22
Q ss_pred HHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHhcc
Q 048567 220 EFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRKSFNEHGTKDMVDVLLQLA 299 (352)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~l~~lL~~~ 299 (352)
.+......+..... |. ++ +...++..+..+.+.+++.++|+++++ .+..|+++.|++..
T Consensus 151 ~~~~~~~~~~~~~~--------~~--~~--p~~~~~~~~~~~~~~~~~~~~i~~r~~---------~~~~dll~~ll~~~ 209 (398)
T 2xkr_A 151 MFLRWSDDLVTFLS--------SH--VS--QEDFQITMDAFAAYNDFTRATIAARRA---------DPTDDLVSVLVSSE 209 (398)
T ss_dssp HHHHHHHHHHHHHT--------SC--CC--HHHHHHHHHHHHHHHHHHHHHHHHHHH---------SCCSSHHHHHHHCC
T ss_pred HHHHHHHHHHhccC--------cc--cc--hhhHHHHHHHHHHHHHHHHHHHHHHHh---------CCCCCHHHHHHHhh
Confidence 34444444433211 11 11 122345667777888888888887754 23579999999875
Q ss_pred CCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 300 DDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 300 ~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
.+ +..++++++..++.++++||+|||+++++|++++|++||++|+|+++|
T Consensus 210 ~~---~~~ls~~ei~~~~~~l~~AG~eTt~~~l~~~l~~L~~~P~~~~~l~~E 259 (398)
T 2xkr_A 210 VD---GERLSDDELVMETLLILIGGDETTRHTLSGGTEQLLRNRDQWDLLQRD 259 (398)
T ss_dssp BT---TBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHSHHHHHHHHHC
T ss_pred cc---CCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHCHHHHHHHHhC
Confidence 42 446999999999999999999999999999999999999999999998
No 55
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB: 2z3u_A* 3a1l_A*
Probab=99.96 E-value=6.2e-29 Score=235.72 Aligned_cols=247 Identities=14% Similarity=0.115 Sum_probs=180.6
Q ss_pred CCCcHHHHHHHhhcCCeeEEeec--CeeEEEeCCHHHHHHHHhhCCcccCCCccc--------c-ccc---c-cc-cCCc
Q 048567 61 QLPHVSLHSLSQKYGPIIQLKFG--LETVVVASSAEVAELILKTHDLTFASRPAL--------L-AGK---H-AN-FNYL 124 (352)
Q Consensus 61 ~~~~~~~~~~~~kYG~i~~i~~g--~~~~vvv~~~~~i~eil~~~~~~f~~r~~~--------~-~~~---~-~~-~~g~ 124 (352)
.+++..+.+|. +||||+++++| +.+++++++|+.+++||.++ .|++|+.. . ... . .. ..+.
T Consensus 20 ~~p~~~~~~l~-~~Gpv~~~~~g~~~~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (425)
T 2z3t_A 20 ADPYPVYRRYR-EAAPVHRTASGPGKPDTYYVFTYDDVVRVLSNR--RLGRNARVASGDTDTAPVPIPTEHRALRTVVEN 96 (425)
T ss_dssp HCCHHHHHHHH-HHCSEEEECCCSSCCCEEEECSHHHHHHHHHCT--TEESSCCCC---------------CHHHHHHTT
T ss_pred cChHHHHHHHH-hcCCeEeccccCCCCCeEEEcCHHHHHHHHcCC--Ccccccccccccccccccccccccccccccccc
Confidence 45778888886 59999999987 77899999999999999875 68877531 1 000 0 11 1224
Q ss_pred eeEecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHH-HHHHHHHHHHHHH
Q 048567 125 VMATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRL-YMFNLATMSRMLL 203 (352)
Q Consensus 125 ~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~f 203 (352)
++++. +|+.|+++||++. +.|++++++.+.+.++++++++++.|.+ . +++|+...+ ..+++++|+.+ |
T Consensus 97 ~l~~~-dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~-------~-g~~dl~~~~~~~~~~~vi~~~-~ 165 (425)
T 2z3t_A 97 WLVFL-DPPHHTELRSLLT-TEFSPSIVTGLRPRIAELASALLDRLRA-------Q-RRPDLVEGFAAPLPILVISAL-L 165 (425)
T ss_dssp CGGGC-CHHHHHHHHHHHH-GGGSHHHHHHHHHHHHHHHHHHHHHHTT-------S-SSCBHHHHTTTHHHHHHHHHH-H
T ss_pred ccccC-CchHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHh-------c-CCccHHHHHHHHHHHHHHHHH-h
Confidence 55544 5999999999995 8999999999999999999999999853 2 279998755 68999999998 9
Q ss_pred hcccccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 048567 204 GKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRKSF 283 (352)
Q Consensus 204 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 283 (352)
|.+.+. ...+......+... .+.+| +. +...++..+..+.+.+++.++|+++++
T Consensus 166 G~~~~~--------~~~~~~~~~~~~~~------~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~i~~r~~------- 219 (425)
T 2z3t_A 166 GIPEED--------HTWLRANAVALQEA------STTRA----RD-GRGYARAEAASQEFTRYFRREVDRRGG------- 219 (425)
T ss_dssp TCCGGG--------HHHHHHHHHHHHTT------CTTCC----C----HHHHHHHHHHHHHHHHHHHHCC----------
T ss_pred CCCHHH--------HHHHHHHHHHHHhh------ccccC----CC-HHHHHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 987642 12333333333211 11122 10 112345566677777777777766543
Q ss_pred CCCCCccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 284 NEHGTKDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 284 ~~~~~~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
..+.|+++.|++...+ +..++++++.+++.++++||+|||+++|+|++++|++||++|+|+++|
T Consensus 220 --~~~~dll~~ll~~~~~---~~~ls~~el~~~~~~l~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~~E 283 (425)
T 2z3t_A 220 --DDRDDLLTLLVRARDT---GSPLSVDGIVGTCVHLLTAGHETTTNFLAKAVLTLRAHRDVLDELRTT 283 (425)
T ss_dssp ------CHHHHHHHHHHT---TCCCCHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHCHHHHHHHHHC
T ss_pred --CCCCCHHHHHHHhhcc---CCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCHHHHHHHHhC
Confidence 2357999999986532 346899999999999999999999999999999999999999999998
No 56
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12; 1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Probab=99.96 E-value=4.1e-29 Score=236.42 Aligned_cols=249 Identities=16% Similarity=0.155 Sum_probs=182.2
Q ss_pred CCCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCcccccccccc--------cCCceeEecCC
Q 048567 60 GQLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPALLAGKHAN--------FNYLVMATAPY 131 (352)
Q Consensus 60 ~~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~~~~~~~--------~~g~~~~~~~~ 131 (352)
..+++..+.+| ++||||+++++| +++|++++.++++|.+. ..+++++......... ..+.+++ ..+
T Consensus 28 ~~~p~~~~~~l-r~~gpv~~~~~g---~~vv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~d 101 (418)
T 3r9b_A 28 RADPYPIYDRI-RRGGPLALPEAN---LAVFSSFSDCDDVLRHP-SSCSDRTKSTIFQRQLAAETQPRPQGPASFL-FLD 101 (418)
T ss_dssp TTCCHHHHHHH-HHHCCEEEGGGT---EEEECSHHHHHHHHHCT-TEECCGGGCHHHHHHHC---------CCCGG-GCC
T ss_pred ccCchHHHHHH-HhcCCEEECCCC---eEEEecHHHHHHHHcCc-ccccCcccccccccccccccccccccccchh-hcC
Confidence 56788888888 689999987776 89999999999999764 3455555322111111 1233444 445
Q ss_pred ChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHH-HHHHHHHHHHHHHhcccccc
Q 048567 132 GPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRL-YMFNLATMSRMLLGKRYTED 210 (352)
Q Consensus 132 g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~ 210 (352)
|+.|+++||++. +.|++++++.+.+.++++++.+++ +.+ ++++|+...+ ..+++++|+. +||.+.+..
T Consensus 102 g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~-l~~--------~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~~ 170 (418)
T 3r9b_A 102 PPDHTRLRGLVS-KAFAPRVIKRLEPEITALVDQLLD-AVD--------GPEFNLIDNLAYPLPVAVICR-LLGVPIEDE 170 (418)
T ss_dssp TTHHHHHHHHHH-GGGSHHHHGGGHHHHHHHHHHHHH-TCC--------SSEEEHHHHTTTHHHHHHHHH-HHTCCGGGH
T ss_pred CchHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHh-hhc--------cCCeehHHHHhCcCCHHHHHH-HcCCCHHHH
Confidence 999999999996 899999999999999999999998 632 3479976655 5899999999 899876432
Q ss_pred cccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCcc
Q 048567 211 NQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRKSFNEHGTKD 290 (352)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d 290 (352)
..+......+..... .++.+.++. ....++..+..+.+.+++.++|+++++ ....|
T Consensus 171 --------~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~i~~r~~---------~~~~d 226 (418)
T 3r9b_A 171 --------PKFSRASALLAAALD------PFLALTGET-SDLFDEQMKAGMWLRDYLRALIDERRR---------TPGED 226 (418)
T ss_dssp --------HHHHHHHHHHHHTTS------CHHHHHSSC-CTTHHHHHHHHHHHHHHHHHHHHHTTT---------SCCSS
T ss_pred --------HHHHHHHHHHHhhcC------ccccccccC-HHHHHHHHHHHHHHHHHHHHHHHHHHh---------CCCcc
Confidence 233333333322111 111111221 223456677778888888888876542 34679
Q ss_pred HHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 291 MVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 291 ~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
+++.|++...+ +..++++++..++.++++||+|||+++|+|++++|++||++|+|+++|
T Consensus 227 ~l~~ll~~~~~---~~~ls~~ei~~~~~~l~~AG~eTTa~~l~~~l~~L~~~P~~~~~l~~E 285 (418)
T 3r9b_A 227 LMSGLVAVEES---GDQLTEDEIIATCNLLLIAGHETTVNLIANAALAMLRTPGQWAALAAD 285 (418)
T ss_dssp HHHHHHHHHHH---SSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSTTHHHHHHHC
T ss_pred HHHHHHHhhhc---cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCHHHHHHHHhC
Confidence 99999986432 346999999999999999999999999999999999999999999998
No 57
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A {Streptomyces natalensis} PDB: 2x9p_A*
Probab=99.96 E-value=4.7e-28 Score=228.15 Aligned_cols=235 Identities=14% Similarity=0.182 Sum_probs=179.8
Q ss_pred CCCCcHHHHHHHhhcCCeeEEee-cCeeEEEeCCHHHHHHHHhhCCcccCCCccccc-ccccccCCce--eEecCCC---
Q 048567 60 GQLPHVSLHSLSQKYGPIIQLKF-GLETVVVASSAEVAELILKTHDLTFASRPALLA-GKHANFNYLV--MATAPYG--- 132 (352)
Q Consensus 60 ~~~~~~~~~~~~~kYG~i~~i~~-g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~~-~~~~~~~g~~--~~~~~~g--- 132 (352)
..+++..+.+| ++|||||++++ |+.+++++++|+.+++||.++ .|++++.... ..... .+.+ ++ ..+|
T Consensus 25 ~~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~-~~~~~~l~-~~~g~~~ 99 (404)
T 2xbk_A 25 MLKLSPLLRAL-QDRGPIHRVRTPAGDEAWLVTRHAELKQLLHDE--RIGRTHPDPPSAAQYV-RSPFLDLL-ISDADAE 99 (404)
T ss_dssp TTBCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHTTCT--TEESBCSSGGGSCCSS-CCHHHHTT-CBCSCHH
T ss_pred ccCccHHHHHH-HhhCCEeeeccCCCceEEEEcCHHHHHHHHcCC--CCCCCccccccCCccc-ccccccce-eeCCCCC
Confidence 35678889999 89999999997 888999999999999999875 4766653211 11111 2334 44 4469
Q ss_pred ---hhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHH-HHHHHHHHHHHHhcccc
Q 048567 133 ---PHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLY-MFNLATMSRMLLGKRYT 208 (352)
Q Consensus 133 ---~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~-~~t~~vi~~~~fG~~~~ 208 (352)
+.|+++||++. +.|++++++.+.+.++++++++++.|.. .|+++|+...+. .+++++|+. +||.+.+
T Consensus 100 ~~~~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~-------~g~~~d~~~~~~~~~~~~vi~~-~~G~~~~ 170 (404)
T 2xbk_A 100 SGRRQHAETRRLLT-PLFSARRVLEMQPKVEEAADTLLDAFIA-------QGPPGDLHGELTVPFALTVLCE-VIGVPPQ 170 (404)
T ss_dssp HHHHHHHHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHHHHH-------TCSSEEHHHHTHHHHHHHHHHH-HHTCCGG
T ss_pred CCCchHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCeeHHHHHHHHHHHHHHHH-HhCCCHH
Confidence 99999999996 7899999999999999999999999964 345899987764 699999997 7998654
Q ss_pred cccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCC
Q 048567 209 EDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRKSFNEHGT 288 (352)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 288 (352)
. ...+......++. . . .| + +..++.+.+.+++.++|+++++. ..
T Consensus 171 ~--------~~~~~~~~~~~~~----~--~--~~--------p---~~~~~~~~~~~~~~~~i~~r~~~---------~~ 214 (404)
T 2xbk_A 171 R--------RAELTTLLAGIAK----L--D--DR--------E---GAVRAQDDLFGYVAGLVEHKRAE---------PG 214 (404)
T ss_dssp G--------HHHHHHHHHHHTB----S--S--CH--------H---HHHHHHHHHHHHHHHHHHHHHHS---------CC
T ss_pred H--------HHHHHHHHHHHHh----c--c--Cc--------H---HHHHHHHHHHHHHHHHHHHHHhC---------CC
Confidence 2 1233333332211 0 0 01 1 34556677788888888777542 24
Q ss_pred ccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 289 KDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 289 ~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
.|+++.| + + + .++++++..++.++++||+|||+++|+|++++|++||++|+|+++|
T Consensus 215 ~dll~~l-~---~---~-~ls~~ei~~~~~~l~~AG~dTta~~l~~~l~~L~~~P~~~~~l~~E 270 (404)
T 2xbk_A 215 PDIISRL-N---D---G-ELTEDRVAHLAMGLLFAGLDSVASIMDNGVVLLAAHPDQRAAALAD 270 (404)
T ss_dssp SSHHHHH-H---S---S-SCCHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCHHHHHHHHHC
T ss_pred CCHHHHh-h---c---C-CCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHhC
Confidence 6899988 2 1 3 6999999999999999999999999999999999999999999998
No 58
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase, metal-binding, oxidoreductase, hypothetical protein; HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB: 2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Probab=99.96 E-value=1.4e-28 Score=232.50 Aligned_cols=243 Identities=14% Similarity=0.074 Sum_probs=180.5
Q ss_pred CCCcHHHHHHHhhcCCee-----EEeecCeeEEEeCCHHHHHHHHhhCCcccCCCcccc-ccc--cc-c-cCCceeEecC
Q 048567 61 QLPHVSLHSLSQKYGPII-----QLKFGLETVVVASSAEVAELILKTHDLTFASRPALL-AGK--HA-N-FNYLVMATAP 130 (352)
Q Consensus 61 ~~~~~~~~~~~~kYG~i~-----~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~-~~~--~~-~-~~g~~~~~~~ 130 (352)
.+++..+.+| ++||||+ ++++ .+++++++|+.++++|.++ ..|++++... ... .+ . ..+.++++.
T Consensus 25 ~~p~~~~~~l-~~~Gpv~~~~~~~~~~--~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~- 99 (414)
T 2uuq_A 25 PNPWPMYRAL-RDHDPVHHVVPPQRPE--YDYYVLSRHADVWSAARDH-QTFSSAQGLTVNYGELEMIGLHDTPPMVMQ- 99 (414)
T ss_dssp TCCHHHHHHH-HHHCSEEEECCTTCGG--GCEEEECSHHHHHHHHHCT-TTEESTTCSSSCTTHHHHHTCSSSCCGGGC-
T ss_pred cCchHHHHHH-HhcCCEEcccccccCC--CCEEEEcCHHHHHHHHcCc-hhccCCCCcccccCcccccccccccccccC-
Confidence 4577888888 5799999 8776 5789999999999999986 5688776432 111 21 1 224455544
Q ss_pred CChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchH-HHHHHHHHHHHHHHHHhccccc
Q 048567 131 YGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLK-DRLYMFNLATMSRMLLGKRYTE 209 (352)
Q Consensus 131 ~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~-~~~~~~t~~vi~~~~fG~~~~~ 209 (352)
+|+.|+++||++. +.|++++++.+.+.++++++++++.|.+. +++|+. +.+..+++++|+. +||.+++.
T Consensus 100 ~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~--------~~vdl~~~~~~~~~~~vi~~-~~G~~~~~ 169 (414)
T 2uuq_A 100 DPPVHTEFRKLVS-RGFTPRQVETVEPTVRKFVVERLEKLRAN--------GGGDIVTELFKPLPSMVVAH-YLGVPEED 169 (414)
T ss_dssp CTTHHHHHHHHHH-TTSSHHHHHHHHHHHHHHHHHHHHHHHHT--------TEEEHHHHTTTHHHHHHHHH-HTTCCGGG
T ss_pred CchhHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHhc--------CCccHHHHHHHHhHHHHHHH-HhCCCHHH
Confidence 6999999999995 89999999999999999999999999751 369997 4567999999999 69987652
Q ss_pred ccccchhhHHHHHHHHHHHHHhhcCCCccccc-ccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCC
Q 048567 210 DNQNNIVTAKEFTEIVDEVFFISGILDIGDAI-PWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRKSFNEHGT 288 (352)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 288 (352)
. ..+......++.. ..+ |.. ++..++.+.+.+++.++|+++++ .+.
T Consensus 170 ~--------~~~~~~~~~~~~~-------~~~~p~~---------~~~~~~~~~~~~~~~~~i~~r~~---------~~~ 216 (414)
T 2uuq_A 170 W--------TQFDGWTQAIVAA-------NAVDGAT---------TGALDAVGSMMAYFTGLIERRRT---------EPA 216 (414)
T ss_dssp H--------HHHHHHHHHHHHH-------HHC--------------CCHHHHHHHHHHHHHHHHHHTT---------SCC
T ss_pred H--------HHHHHHHHHHHhh-------cccCCch---------hHHHHHHHHHHHHHHHHHHHHHh---------CCC
Confidence 1 2333333333321 012 321 11234555677777777776542 235
Q ss_pred ccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 289 KDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 289 ~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
.|+++.|++...++ ++..++++++..++.++++||+|||+++++|++++|++||++|+|+++|
T Consensus 217 ~dll~~ll~~~~~~-~~~~ls~~ei~~~~~~l~~AG~eTt~~~l~~~l~~L~~~P~~~~~l~~E 279 (414)
T 2uuq_A 217 DDAISHLVAAGVGA-DGDTAGTLSILAFTFTMVTGGNDTVTGMLGGSMPLLHRRPDQRRLLLDD 279 (414)
T ss_dssp SSHHHHHHHTTTTC-TTCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHTCHHHHHHHHHC
T ss_pred CCHHHHHHhccccc-CCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHhC
Confidence 79999999875311 1346899999999999999999999999999999999999999999998
No 59
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans} SCOP: a.104.1.0 PDB: 3lxi_A*
Probab=99.96 E-value=1.4e-28 Score=233.06 Aligned_cols=263 Identities=16% Similarity=0.183 Sum_probs=189.0
Q ss_pred CCCCCCCCCc--ccccc-----cCCCCCcHHHHHHHhhcC-CeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCcccc
Q 048567 43 PPPGPKPWPL--IGNLN-----LIGQLPHVSLHSLSQKYG-PIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPALL 114 (352)
Q Consensus 43 ~~PGp~~~pi--~G~l~-----~~~~~~~~~~~~~~~kYG-~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~ 114 (352)
.+|.|+.+|. +..+- .+..+++..+.++++++| ||+++..|+ ++++|++|+.+++||. +...|++++...
T Consensus 13 ~~~~p~~~p~~~~~~~~~~~~~~~~~dp~~~~~~lr~~~G~pv~~~~~~~-~~~vv~~~~~v~~vl~-~~~~f~~~~~~~ 90 (421)
T 3lxh_A 13 RVAPPPHVPGHLIREIDAYDLDGLEQGFHEAWKRVQQPDTPPLVWTPFTG-GHWIATRGTLIDEIYR-SPERFSSRVIWV 90 (421)
T ss_dssp CCCCCTTSCGGGBCCCCTTSCTTGGGCHHHHHHHHCCTTCCSEEEESSTT-SEEEECSHHHHHHHHT-CTTTEETTCCSS
T ss_pred CCCCCCCCChhhccCCCCCCchhhhcChhHHHHHHHhcCCCCeEeccCCC-CeEEEcCHHHHHHHHc-ChhhccCCcccC
Confidence 3666666662 22221 122467788888876655 899988776 5889999999999994 445788776321
Q ss_pred cccccc-cCCceeEecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHH-HH
Q 048567 115 AGKHAN-FNYLVMATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRL-YM 192 (352)
Q Consensus 115 ~~~~~~-~~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~-~~ 192 (352)
. .... ..+.+ ++..+|+.|+++||++. +.|++++++.+.+.+++.++.+++.|.+ ++++|+...+ ..
T Consensus 91 ~-~~~~~~~~~~-~~~~dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~--------~~~~d~~~~~~~~ 159 (421)
T 3lxh_A 91 P-REAGEAYDMV-PTKLDPPEHTPYRKAID-KGLNLAEIRKLEDQIRTIAVEIIEGFAD--------RGHCEFGSEFSTV 159 (421)
T ss_dssp S-HHHHHHCCCT-TTTCCTTTHHHHHHHHH-HHHSHHHHHTTHHHHHHHHHHHHHTTTT--------TSEEEHHHHTTTT
T ss_pred C-cccccccccC-CccCCcHHHHHHHHHHh-hhcCHHHHHHHHHHHHHHHHHHHHHHhh--------cCCeehHHHHHHH
Confidence 1 1111 12223 34556999999999986 7999999999999999999999988743 3468876555 56
Q ss_pred HHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHH
Q 048567 193 FNLATMSRMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLD 272 (352)
Q Consensus 193 ~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~ 272 (352)
++.++++.+ ||...+. ...+......++... ..+|. ...++..+..+.+.+++.++|+
T Consensus 160 ~~~~v~~~~-~G~~~~~--------~~~~~~~~~~~~~~~------~~~p~-------~~~~~~~~~~~~~~~~~~~~i~ 217 (421)
T 3lxh_A 160 FPVRVFLAL-AGLPVED--------ATKLGLLANEMTRPS------GNTPE-------EQGRSLEAANKGFFEYVAPIIA 217 (421)
T ss_dssp HHHHHHHHH-HTCCGGG--------HHHHHHHHHHHHSCC------CSSHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCHHH--------HHHHHHHHHHHhccc------cCCCc-------hhHHHHHHHHHHHHHHHHHHHH
Confidence 888888764 8975532 234444444333110 11221 1135666777788888888887
Q ss_pred HHHHHhccccCCCCCCccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 273 EHERHAKRKSFNEHGTKDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 273 ~~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
++++ ....|+++.|++...+ +..++++++..++.++++||+|||+++++|++++|++||++|+|+++|
T Consensus 218 ~r~~---------~~~~dll~~ll~~~~~---~~~l~~~ei~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~~~~l~~E 285 (421)
T 3lxh_A 218 ARRG---------GSGTDLITRILNVEID---GKPMPDDRALGLVSLLLLGGLDTVVNFLGFMMIYLSRHPETVAEMRRE 285 (421)
T ss_dssp HHTT---------CCCCSHHHHHHTSCBT---TBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHh---------CCCCCHHHHHHhhhcc---CCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCHHHHHHHHhC
Confidence 7642 2567999999987543 456999999999999999999999999999999999999999999998
No 60
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta binding protein; HET: HEM; 2.47A {Micromonospora echinospora}
Probab=99.96 E-value=3.8e-28 Score=228.30 Aligned_cols=242 Identities=18% Similarity=0.171 Sum_probs=179.7
Q ss_pred CCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCcccccc------cccccC-CceeEecCCCh
Q 048567 61 QLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPALLAG------KHANFN-YLVMATAPYGP 133 (352)
Q Consensus 61 ~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~~~------~~~~~~-g~~~~~~~~g~ 133 (352)
.+++..+.++ ++||||++ + | .+++++++|+.++++|.++ .|++++..... ..+... +.++++ .+|+
T Consensus 13 ~~p~~~~~~l-~~yGpv~~-~-g-~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~ 85 (397)
T 3buj_A 13 RDPYPSYHWL-LRHDPVHR-G-A-HRVWYVSRFADVRAVLGDE--RFARTGIRRFWTDLVGPGLLAEIVGDIILF-QDEP 85 (397)
T ss_dssp HCCHHHHHHH-HHHCSEEE-C-G-GGCEEECSHHHHHHHHTCT--TEESHHHHHHHHHHHCSSHHHHHHTTCGGG-CCTT
T ss_pred cCchHHHHHH-HhcCCeee-C-C-CCeEEEcCHHHHHHHHcCC--CcccCccccccccccccccccccccccccc-CCch
Confidence 3567777666 69999998 6 5 6899999999999999863 57665422100 011111 345544 4699
Q ss_pred hHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHH-HHHHHHHHHHHHHhcccccccc
Q 048567 134 HWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRL-YMFNLATMSRMLLGKRYTEDNQ 212 (352)
Q Consensus 134 ~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~ 212 (352)
.|+++||++. +.|++++++.+.+.++++++++++.|.. ++++|+...+ ..+++++|+.+ ||.+.+.
T Consensus 86 ~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~--------~~~~dl~~~~~~~~~~~vi~~~-~G~~~~~--- 152 (397)
T 3buj_A 86 DHGRLRGVVG-PAFSPSALRRLEPVIAGTVDDLLRPALA--------RGAMDVVDELAYPLALRAVLGL-LGLPAAD--- 152 (397)
T ss_dssp HHHHHHHHHG-GGSSTTTTGGGHHHHHHHHHHHHHHHHT--------TTEEEHHHHTHHHHHHHHHHHH-HTCCGGG---
T ss_pred hHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHHhh--------cCCeehHHHHHHHhHHHHHHHH-hCCCHHH---
Confidence 9999999996 7999999999999999999999999863 2379987554 68999999998 9987643
Q ss_pred cchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHH
Q 048567 213 NNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRKSFNEHGTKDMV 292 (352)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~l 292 (352)
...+......+.... ++ .+ .+...++..+..+.+.+++.++|+++++. ...|++
T Consensus 153 -----~~~~~~~~~~~~~~~---------~~--~~-~~~~~~~~~~~~~~~~~~~~~~i~~r~~~---------~~~dll 206 (397)
T 3buj_A 153 -----WGAVGRWSRDVGRTL---------DR--GA-SAEDMRRGHAAIAEFADYVERALARRRRE---------GGEDLL 206 (397)
T ss_dssp -----HHHHHHHHHHHHGGG---------CS--SC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------CCCSHH
T ss_pred -----HHHHHHHHHHHHhhc---------CC--CC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcC---------CCCCHH
Confidence 123433333333211 11 01 11123456677778888888888877642 246999
Q ss_pred HHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 293 DVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 293 ~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
+.|++...+ +. +++++|.+++.++++||+|||+++|+|++++|++||++|+|+++|
T Consensus 207 ~~ll~~~~~---~~-ls~~ei~~~~~~~~~AG~~Tt~~~l~~~l~~L~~~P~~~~~l~~E 262 (397)
T 3buj_A 207 ALMLDAHDR---GL-MSRNEIVSTVVTFIFTGHETVASQVGNAVLSLLAHPDQLDLLRRR 262 (397)
T ss_dssp HHHHHHHHT---TS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHC
T ss_pred HHHHHhhhc---CC-CCHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhCHHHHHHHhhC
Confidence 999986432 33 999999999999999999999999999999999999999999998
No 61
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A {Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Probab=99.96 E-value=1.3e-28 Score=232.50 Aligned_cols=240 Identities=13% Similarity=0.110 Sum_probs=179.2
Q ss_pred CCCCcHHHHHHHhhcCCeeEEeecC--eeEEEeCCHHHHHHHHhhCCcccCCCccccc----ccccccC-CceeEecCCC
Q 048567 60 GQLPHVSLHSLSQKYGPIIQLKFGL--ETVVVASSAEVAELILKTHDLTFASRPALLA----GKHANFN-YLVMATAPYG 132 (352)
Q Consensus 60 ~~~~~~~~~~~~~kYG~i~~i~~g~--~~~vvv~~~~~i~eil~~~~~~f~~r~~~~~----~~~~~~~-g~~~~~~~~g 132 (352)
++.+|..+.+++ +||||+++++++ .+++++++|+.+++||.+. .|++++.... ...+... +.+++ ..+|
T Consensus 26 g~~p~~~~~~l~-~~Gpv~~~~~~~g~~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~l~-~~dg 101 (411)
T 2dkk_A 26 GPEFDPVLAELM-REGPLTRVRLPHGEGWAWLATRYDDVKAITNDP--RFGRAEVTQRQITRLAPHFKPRPGSLA-FADQ 101 (411)
T ss_dssp SSCCCHHHHHHH-TTCSEEEEECSBSBSCEEEECSHHHHHHHTTCT--TEESGGGGGSCBCBSSSCCCCCTTCST-TCCT
T ss_pred cccccHHHHHHH-hcCCeEeeecCCCceeEEEEcCHHHHHHHHcCC--CcccCCCCCCCccccccchhccccccc-cCCc
Confidence 345678888887 899999998754 6799999999999999863 5766543211 1111101 34444 4579
Q ss_pred hhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHH-HHHHHHHHHHHHhccccccc
Q 048567 133 PHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLY-MFNLATMSRMLLGKRYTEDN 211 (352)
Q Consensus 133 ~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~-~~t~~vi~~~~fG~~~~~~~ 211 (352)
+.|+++||++. +.|++++++.+.+.+.+.++++++.|.+ .++++|+...+. .+++++|+. +||.+++.
T Consensus 102 ~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~-------~g~~~dl~~~~~~~~~~~vi~~-l~G~~~~~-- 170 (411)
T 2dkk_A 102 PDHNRLRRAVA-GAFTVGATKRLRPRAQEILDGLVDGILA-------EGPPADLVERVLEPFPIAVVSE-VMGVPAAD-- 170 (411)
T ss_dssp THHHHHHHHHG-GGSSHHHHHHHHHHHHHHHHHHHHHHHH-------HCSCEEHHHHTTTHHHHHHHHH-HHTCCSSH--
T ss_pred hHHHHHHHHhh-HhhCHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCeehHHHHHHHHHHHHHHH-HhCCCHHH--
Confidence 99999999996 7899999999999999999999999975 245799998876 699999998 59986542
Q ss_pred ccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccH
Q 048567 212 QNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRKSFNEHGTKDM 291 (352)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~ 291 (352)
...+..... ... ...+ . .++..+..+.+.+++.++|+++++ .+..|+
T Consensus 171 ------~~~~~~~~~----~~~-----~~~~--------~-~~~~~~~~~~l~~~~~~~i~~r~~---------~~~~dl 217 (411)
T 2dkk_A 171 ------RERVHSWTR----QII-----STSG--------G-AEAAERAKRGLYGWITETVRARAG---------SEGGDV 217 (411)
T ss_dssp ------HHHHHHHHG----GGC-----SSCS--------C-SHHHHHHHHHHHHHHHHHHHTTTT---------CCSSCH
T ss_pred ------HHHHHHHHH----HHH-----hccc--------h-HHHHHHHHHHHHHHHHHHHHHHHh---------CCCCCH
Confidence 122222211 111 0111 1 134556667777777777766532 235699
Q ss_pred HHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 292 VDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 292 l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
++.|++. .+ +..+++++|.+++.++++|| |||+++|+|++++|++||++|+|+++|
T Consensus 218 l~~ll~~-~~---~~~ls~~el~~~~~~l~~AG-eTta~~l~~~l~~L~~~P~~~~~l~~E 273 (411)
T 2dkk_A 218 YSMLGAA-VG---RGEVGETEAVGLAGPLQIGG-EAVTHNVGQMLYLLLTRRELMARMRER 273 (411)
T ss_dssp HHHHHHH-HH---TTSSCTTSHHHHHHHHHHTH-HHHHHHHHHHHHHHHHSHHHHHHHHHC
T ss_pred HHHHHHh-cC---CCCCCHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhCHHHHHHHHhC
Confidence 9999986 22 44689999999999999999 999999999999999999999999998
No 62
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450 vancomycin, oxidoreductase; HET: HEM; 1.70A {Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A* 1lgf_A*
Probab=99.96 E-value=3e-28 Score=229.03 Aligned_cols=235 Identities=12% Similarity=0.148 Sum_probs=173.9
Q ss_pred HHHHHHhhcCCeeEEeec-Ce---eEEEeCCHHHHHHHHhhCCcccCCCccc------cccccc--ccCCceeEecCCCh
Q 048567 66 SLHSLSQKYGPIIQLKFG-LE---TVVVASSAEVAELILKTHDLTFASRPAL------LAGKHA--NFNYLVMATAPYGP 133 (352)
Q Consensus 66 ~~~~~~~kYG~i~~i~~g-~~---~~vvv~~~~~i~eil~~~~~~f~~r~~~------~~~~~~--~~~g~~~~~~~~g~ 133 (352)
.+.+|+++ |||++++++ +. +++++++|+.++++|.++. .|++|+.. ...... ...+.++++ .+|+
T Consensus 18 ~~~~l~~~-Gpv~~~~~~~g~~~~~~vvv~~~~~v~~vl~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~ 94 (398)
T 1lfk_A 18 PADELLAA-GALTRVTIGSGADAETHWMATAHAVVRQVMGDHQ-QFSTRRRWDPRDEIGGKGIFRPRELVGNLMD-YDPP 94 (398)
T ss_dssp ECHHHHTS-CSEEEEC------CCCEEEECSHHHHHHHHHCTT-TEEECTTCCC-------------CCTTCGGG-CCTT
T ss_pred hhHHHHhc-CCccccccCCCCcccceEEEecHHHHHHHHhhCc-ccccccccccccccCCcccccccccccCccc-cCCH
Confidence 34557766 999998875 45 8999999999999994433 57766541 111111 112345544 4699
Q ss_pred hHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHH-HHHHHHHHHHHhcccccccc
Q 048567 134 HWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLYM-FNLATMSRMLLGKRYTEDNQ 212 (352)
Q Consensus 134 ~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~~-~t~~vi~~~~fG~~~~~~~~ 212 (352)
.|+++||++. +.|++++++.+.+.++++++++++.|.+ .++++|+.+.+.. ++.++++. +||.+++.
T Consensus 95 ~~~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~-------~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~--- 162 (398)
T 1lfk_A 95 EHTRLRRKLT-PGFTLRKMQRMAPYIEQIVNDRLDEMER-------AGSPADLIAFVADKVPGAVLCE-LVGVPRDD--- 162 (398)
T ss_dssp HHHHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHHHHH-------HCSSEEHHHHTTTTHHHHHHHH-HHTCCGGG---
T ss_pred HHHHHHHHHH-hhhCHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCccHHHHHHHHHHHHHHHH-HcCCCHHH---
Confidence 9999999996 7899999999999999999999999964 2457999999987 99999998 59987642
Q ss_pred cchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHH
Q 048567 213 NNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRKSFNEHGTKDMV 292 (352)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~l 292 (352)
...+......++ .. ++..++..++.+.+.+++.++|+++++. ...|++
T Consensus 163 -----~~~~~~~~~~~~------------~~------~~~~~~~~~~~~~~~~~~~~~i~~r~~~---------~~~dll 210 (398)
T 1lfk_A 163 -----RDMFMKLCHGHL------------DA------SLSQKRRAALGDKFSRYLLAMIARERKE---------PGEGMI 210 (398)
T ss_dssp -----HHHHHHHHHHTT------------CT------TSCHHHHHHHHHHHHHHHHHHHHHHHHS---------CCSSHH
T ss_pred -----HHHHHHHHHHHH------------hc------ccchHHHHHHHHHHHHHHHHHHHHHHhC---------CCCCHH
Confidence 123333322211 00 0112456677778888888888877642 246999
Q ss_pred HHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 293 DVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 293 ~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
+.|++.. +..++++++.+++.++++||+|||+++|+|++++|++||++|+|+++|
T Consensus 211 ~~ll~~~-----~~~l~~~el~~~~~~l~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~~E 265 (398)
T 1lfk_A 211 GAVVAEY-----GDDATDEELRGFCVQVMLAGDDNISGMIGLGVLAMLRHPEQIDAFRGD 265 (398)
T ss_dssp HHHHHHH-----GGGSCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHSGGGGGGGSSC
T ss_pred HHHHHhc-----CCCCCHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHCHHHHHHHHhC
Confidence 9999864 125899999999999999999999999999999999999999999988
No 63
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein, oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB: 3nc5_A* 3nc6_A* 3nc7_A*
Probab=99.96 E-value=2.7e-28 Score=232.39 Aligned_cols=245 Identities=14% Similarity=0.128 Sum_probs=169.2
Q ss_pred CCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCcccccccccccCCceeEecCCChhHHHhhh
Q 048567 61 QLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPALLAGKHANFNYLVMATAPYGPHWRQTRK 140 (352)
Q Consensus 61 ~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~~~~~~~~~g~~~~~~~~g~~Wk~~Rr 140 (352)
.+++..+.++ ++||||+++..++ +++|++|+.+++||.++. .|++++........ .+.+.++..+|+.|+++||
T Consensus 53 ~~p~~~~~~l-r~~gpv~~~~~~~--~~vv~~~~~v~~vl~~~~-~f~~~~~~~~~~~~--~~~~~l~~~dg~~h~~~Rr 126 (441)
T 3nc3_A 53 NNPYAYFSQL-REEDPVHYEESID--SYFISRYHDVRYILQHPD-IFTTKSLVERAEPV--MRGPVLAQMHGKEHSAKRR 126 (441)
T ss_dssp HCGGGTHHHH-HHHCSEEEETTTT--EEEECCHHHHHHHHHCTT-TEECCCTTSCCCCS--CC-------------CCHH
T ss_pred cChHHHHHHH-HhcCCEEEeCCCC--EEEEcCHHHHHHHhcCcc-cccccccccccccc--cCCCccccCCcHHHHHHHH
Confidence 3566667665 6899999876655 899999999999998775 48776643322221 1333344556999999999
Q ss_pred hhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHH-HHHHHHHHHHHHHHHhcccccccccchhhHH
Q 048567 141 TFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKD-RLYMFNLATMSRMLLGKRYTEDNQNNIVTAK 219 (352)
Q Consensus 141 ~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~-~~~~~t~~vi~~~~fG~~~~~~~~~~~~~~~ 219 (352)
++. +.|++++++.+.+.++++++++++.|.+ ++++|+.. ....+++++|+. +||.+.+. ..
T Consensus 127 ~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~--------~~~~dl~~~~~~~~~~~vi~~-l~G~~~~~--------~~ 188 (441)
T 3nc3_A 127 IVV-RSFIGDALDHLSPLIKQNAENLLAPYLE--------RGKSDLVNDFGKTFAVCVTMD-MLGLDKRD--------HE 188 (441)
T ss_dssp HHH-HHHHHTHHHHHHHHHHHHHHHHHTTTTT--------TTEEECCCCCHHHHHHHHHHH-HTTCCGGG--------HH
T ss_pred HHH-hhcCHHHHHHHHHHHHHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHHHH-HcCCCHHH--------HH
Confidence 995 8999999999999999999999887742 34688754 445699999998 58976532 23
Q ss_pred HHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHhcc
Q 048567 220 EFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRKSFNEHGTKDMVDVLLQLA 299 (352)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~l~~lL~~~ 299 (352)
.+......+........ .+ ....++..+..+.+.+++..+|+++++ ....|+++.|++..
T Consensus 189 ~~~~~~~~~~~~~~~~~----~~-------~~~~~~~~~~~~~l~~~~~~~i~~rr~---------~~~~Dll~~Ll~~~ 248 (441)
T 3nc3_A 189 KISEWHSGVADFITSIS----QS-------PEARAHSLWCSEQLSQYLMPVIKERRV---------NPGSDLISILCTSE 248 (441)
T ss_dssp HHHHHHHHHHHHHHCSC----CC-------HHHHHHHHHHHHHHHHHHHHHHHHHTT---------SCCSSHHHHHCC--
T ss_pred HHHHHHHHHHHhccccc----CC-------hHHHHHHHHHHHHHHHHHHHHHHHHHh---------CCCCCHHHHHHHhh
Confidence 34444444433221100 00 111345566677788888888877642 34579999999865
Q ss_pred CCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 300 DDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 300 ~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
.+ +..+++++|.+++..+++||+|||+++++|++++|++||++|+|+++|
T Consensus 249 ~~---~~~ls~~el~~~~~~ll~AG~eTTa~~l~~~l~~L~~~P~~~~~l~~E 298 (441)
T 3nc3_A 249 YE---GMALSDKDILALILNVLLAATEPADKTLALMIYHLLNNPEQMNDVLAD 298 (441)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHC
T ss_pred cc---CCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCHHHHHHHHhC
Confidence 42 456999999999999999999999999999999999999999999987
No 64
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A {Novosphingobium aromaticivorans} PDB: 3ofu_A*
Probab=99.96 E-value=6.8e-28 Score=226.43 Aligned_cols=240 Identities=12% Similarity=0.090 Sum_probs=180.2
Q ss_pred CCCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCcccccccccccCCceeEecCCChhHHHhh
Q 048567 60 GQLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPALLAGKHANFNYLVMATAPYGPHWRQTR 139 (352)
Q Consensus 60 ~~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~~~~~~~~~g~~~~~~~~g~~Wk~~R 139 (352)
..+++..+.+|+++ |||+++.+|+ +.+++++|+.++++|.+. +.|++++.... ......+...++..+|+.|+++|
T Consensus 23 ~~~p~~~~~~l~~~-Gpv~~~~~~~-~~~vv~~~~~v~~vl~~~-~~f~~~~~~~~-~~~~~~~~~~~~~~~g~~h~~~R 98 (396)
T 3oft_A 23 EQDYFAAWKTLLDG-PGLVWSTANG-GHWIAARGDVVRELWGDA-ERLSSQCLAVT-PGLGKVMQFIPLQQDGAEHKAFR 98 (396)
T ss_dssp TTCHHHHHHGGGGS-CSEEEECSTT-SEEEECSHHHHHHHHHCT-TTEESTTCCSS-TTHHHHHCCTTTTCCHHHHHHHH
T ss_pred hcChHHHHHHHHhc-CCeeeecCCC-CEEEEcCHHHHHHHHcCc-ccccCCcccCC-CccccccccCccccCCcHHHHHH
Confidence 45788899999988 9999998875 588899999999999654 57887763211 11111111234456799999999
Q ss_pred hhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHH-HHHHHHHHHHHHHhcccccccccchhhH
Q 048567 140 KTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRL-YMFNLATMSRMLLGKRYTEDNQNNIVTA 218 (352)
Q Consensus 140 r~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~~~~~ 218 (352)
|++. +.|++++++.+.+.+.+.++.+++.|.+. +++|+...+ ..++.++++. +||...+. .
T Consensus 99 ~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~~--------~~~d~~~~~~~~~~~~v~~~-~~G~~~~~--------~ 160 (396)
T 3oft_A 99 TPVM-KGLASRFVVALEPKVQAVARKLMESLRPR--------GSCDFVSDFAEILPLNIFLT-LIDVPLED--------R 160 (396)
T ss_dssp HHHH-HHTCHHHHHHHHHHHHHHHHHHHHHHGGG--------SEEEHHHHTTTTHHHHHHHH-HTTCCGGG--------H
T ss_pred HHhh-hhhCHHHHHHHHHHHHHHHHHHHHHhhhc--------CCccHHHHHHHHHHHHHHHH-HcCCCHHH--------H
Confidence 9996 89999999999999999999999999642 368886666 5577777776 58865432 2
Q ss_pred HHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHhc
Q 048567 219 KEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRKSFNEHGTKDMVDVLLQL 298 (352)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~l~~lL~~ 298 (352)
..+......++. ... .++..+..+.+.+++..+|+++++ ....|+++.|++.
T Consensus 161 ~~~~~~~~~~~~------------~~~-------~~~~~~~~~~~~~~~~~~i~~r~~---------~~~~d~l~~ll~~ 212 (396)
T 3oft_A 161 PRLRQLGVQLTR------------PDG-------SMTVEQLKQAADDYLWPFIEKRMA---------QPGDDLFSRILSE 212 (396)
T ss_dssp HHHHHHHHHHHS------------CCS-------SCCHHHHHHHHHHHHHHHHHHHHH---------SCCSSHHHHHHTS
T ss_pred HHHHHHHHHHhC------------CCC-------HHHHHHHHHHHHHHHHHHHHHHHh---------CCCCCHHHHHHHh
Confidence 334333333221 000 012345666778888888887764 2457999999987
Q ss_pred cCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 299 ADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 299 ~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
..+ +..++++++..++.++++||+|||+++++|++++|++||++|+|+++|
T Consensus 213 ~~~---~~~l~~~el~~~~~~l~~AG~dTta~~l~~~l~~L~~~P~~~~~l~~E 263 (396)
T 3oft_A 213 PVG---GRPWTVDEARRMCRNLLFGGLDTVAAMIGMVALHLARHPEDQRLLRER 263 (396)
T ss_dssp CBT---TBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHC
T ss_pred hcc---CCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCHHHHHHHHhC
Confidence 543 456999999999999999999999999999999999999999999998
No 65
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid biosynthesis, heme, iron, synthesis, lyase, metal-binding, oxylipin biosynthesis; HET: HEM T25; 1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Probab=99.95 E-value=6.1e-29 Score=240.08 Aligned_cols=279 Identities=10% Similarity=0.072 Sum_probs=174.1
Q ss_pred CcCCCCCCCCCCCCCcccccccC-----CCCCcHHHHHHHhhcCC-eeEEeecCeeE-------EEeCCHHHHHHHHhhC
Q 048567 37 NKLNLLPPPGPKPWPLIGNLNLI-----GQLPHVSLHSLSQKYGP-IIQLKFGLETV-------VVASSAEVAELILKTH 103 (352)
Q Consensus 37 ~~~~~~~~PGp~~~pi~G~l~~~-----~~~~~~~~~~~~~kYG~-i~~i~~g~~~~-------vvv~~~~~i~eil~~~ 103 (352)
.+.+ .||||++||++|+++++ .++++.++.++.+|||| ||++++|+.++ +++++++..+.++...
T Consensus 25 ~p~~--~pPGp~g~P~iG~~~~~~~~~~~~~~~~f~~~~~~kyG~~Vf~~~l~~~~~vv~~p~~v~~~~~~~~~~l~~~~ 102 (495)
T 3dsk_A 25 LPIR--NIPGNYGLPIVGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYRVNMPPGAFIAENPQVVALLDGKSFPVLFDVD 102 (495)
T ss_dssp CCBC--CCCCCCCSTTHHHHHHHHHHHTTSCHHHHHHHHHHHHTCSEEEEECSCCTTTCSCCEEEEECSTTTGGGGGCTT
T ss_pred CCCC--CCCCCCCCCccchHHHHHHHHHhcCcHHHHHHHHHHhCCceEeecCCCCCCccCCCCEEEEeCCcceeeecccc
Confidence 3455 79999999999999876 46788899999999999 99999988777 6667766665444331
Q ss_pred C----ccc-CCCcccccccccccCCceeEecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCC
Q 048567 104 D----LTF-ASRPALLAGKHANFNYLVMATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSS 178 (352)
Q Consensus 104 ~----~~f-~~r~~~~~~~~~~~~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~ 178 (352)
. ..+ ...+.. ...+...+...++..+|+.|+++|+++. +.|++.. +.+.+.+++.++.+++.|.+. .
T Consensus 103 ~v~k~~~~~~~~~~~--~~l~g~~~~~~~~~~~g~~h~~~R~~~~-~~f~~~~-~~~~~~i~~~~~~ll~~~~~~----~ 174 (495)
T 3dsk_A 103 KVEKKDLLTGTYMPS--TELTGGYRILSYLDPSEPKHEKLKNLLF-FLLKSSR-NRIFPEFQATYSELFDSLEKE----L 174 (495)
T ss_dssp TEECSSCTTSSSCCC--GGGGTTCCCGGGCCTTSHHHHHHHHHHH-HHHHHTT-TTHHHHHHHHHHHHHHHHHHH----H
T ss_pred cccccccccccCCCC--ccccCCCcceeeeCCCchHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHH----h
Confidence 1 112 111211 1221111122334457999999999986 7788754 889999999999999999752 1
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHH-H
Q 048567 179 PSSTPVHLKDRLYMFNLATMSRMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRM-K 257 (352)
Q Consensus 179 ~~~~~vd~~~~~~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~-~ 257 (352)
.+++++|+.+.+..+++++++.++||.+....+ ....+...+..+.... ..|++.. ..+...+.+ .
T Consensus 175 ~~~~~vdl~~~~~~~~~~~i~~~~~G~~~~~~~-----~~~~~~~~~~~~~~~~-------~~p~~~~-~~p~~~~~~~~ 241 (495)
T 3dsk_A 175 SLKGKADFGGSSDGTAFNFLARAFYGTNPADTK-----LKADAPGLITKWVLFN-------LHPLLSI-GLPRVIEEPLI 241 (495)
T ss_dssp HHHSSEESHHHHHHHHHHHHHHHHHSCCGGGST-----TTTCHHHHHHHHHHHH-------HGGGCCC-SSCHHHHHHHH
T ss_pred ccCCCccHHHHHHHHHHHHHHHHHcCCCcchhh-----hhhhHHHHHHHHHHHh-------hhhHhHh-ccHHHHHHHHH
Confidence 235689999999999999999999998776532 1112222222222111 1122111 011100000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHh-cccccchHHHHHHHH
Q 048567 258 AVKKKADKFYEHVLDEHERHAKRKSFNEHGTKDMVDVLLQLADDPTLEVKVERDHIKAAIQDLL-LGGIETSAITTEWAM 336 (352)
Q Consensus 258 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~-~aG~dTta~tl~~~l 336 (352)
+..+.....+....++..+.. .|.++.+++..+ +..++++++..++..++ +||+|||+++++|++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ll~~~~----~~~l~~~ei~~~~~~~l~~ag~~tt~~~l~~~l 307 (495)
T 3dsk_A 242 HTFSLPPALVKSDYQRLYEFF----------LESAGEILVEAD----KLGISREEATHNLLFATCFNTWGGMKILFPNMV 307 (495)
T ss_dssp SSSCCCGGGGHHHHHHHHHHH----------HHHCHHHHHHHH----HTTCCHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HhhcccchhhhhhHHHHHHHH----------HHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 000000000000000000000 122233444332 23689999998666655 999999999999999
Q ss_pred HHHhh-ChHHHHHhhhC
Q 048567 337 SELLK-NPRVIQKATEE 352 (352)
Q Consensus 337 ~~L~~-~Pevq~kl~~E 352 (352)
++|+. ||++|+|||+|
T Consensus 308 ~~L~~~~P~~~~~lr~E 324 (495)
T 3dsk_A 308 KRIGRAGHQVHNRLAEE 324 (495)
T ss_dssp HHHHHHCHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHH
Confidence 99995 99999999987
No 66
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein, vancomycin biosynthes carrier protein, oxidoreductase; HET: HEM; 2.10A {Amycolatopsis balhimycina}
Probab=99.95 E-value=1.3e-27 Score=225.99 Aligned_cols=240 Identities=12% Similarity=0.114 Sum_probs=177.3
Q ss_pred CCCcHHHHHHHhhcCCeeEEe-ecC-eeEEEeCCHHHHHHHHhhCCcccCCCcccccccccc---cC-CceeEecCCChh
Q 048567 61 QLPHVSLHSLSQKYGPIIQLK-FGL-ETVVVASSAEVAELILKTHDLTFASRPALLAGKHAN---FN-YLVMATAPYGPH 134 (352)
Q Consensus 61 ~~~~~~~~~~~~kYG~i~~i~-~g~-~~~vvv~~~~~i~eil~~~~~~f~~r~~~~~~~~~~---~~-g~~~~~~~~g~~ 134 (352)
.+++..+.+|.+ ||||++++ .|. .++++|++++.++++|.+. ..|++++......... .. +.+ ++..+|+.
T Consensus 37 ~dp~~~~~~lr~-~gpV~~~~~~g~~~~~~vv~~~~~v~~vl~~~-~~fs~~~~~~~~~~~~~~~~~~~~~-l~~~dg~~ 113 (415)
T 3mgx_A 37 LERHARWRELAA-EDAMVWSDPGSSPSGFWSVFSHRACAAVLAPS-APLTSEYGMMIGFDRDHPDNSGGRM-MVVSEHEQ 113 (415)
T ss_dssp TTHHHHHHHHHH-HTCCEEECSSSSSSCEEEECSHHHHHHHSCTT-SSEECTTCSSTTCCSSSCCTTTTTS-GGGCCHHH
T ss_pred CChhHHHHHHHh-cCCEeeccCCCCcCCEEEEecHHHHHHHHhCh-hhhcCCccccccccccccccccCCC-ccccCcHH
Confidence 467888888875 99999886 453 6899999999999999544 4688776432211110 11 223 44567999
Q ss_pred HHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHH-HHHHHHHHHHHHHhccccccccc
Q 048567 135 WRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRL-YMFNLATMSRMLLGKRYTEDNQN 213 (352)
Q Consensus 135 Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~ 213 (352)
|+++||++. +.|++++++++.+.++++++.+++.|.+ ++++|+...+ ..+++++||. +||...+.
T Consensus 114 h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~--------~~~~dl~~~~~~~~~~~vi~~-l~G~~~~~---- 179 (415)
T 3mgx_A 114 HRKLRKLVG-PLLSRAAARKLAERVRIEVGDVLGRVLD--------GEVCDAATAIGPRIPAAVVCE-ILGVPAED---- 179 (415)
T ss_dssp HHHHHHHHG-GGSSHHHHHHSHHHHHHHHHHHTTTSSS--------SSCEESTTTTTTHHHHHHHHH-HHTCCGGG----
T ss_pred HHHHHHHhH-hhhCHHHHHHHHHHHHHHHHHHHHHHHh--------cCCcchHHHHHHHHHHHHHHH-HcCCCHHH----
Confidence 999999985 8999999999999999999998887743 2379999888 6799999998 58865332
Q ss_pred chhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHH
Q 048567 214 NIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRKSFNEHGTKDMVD 293 (352)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~l~ 293 (352)
...+......++.. ......| .. ..+..+.+.+++.++|+++++ .+..|+++
T Consensus 180 ----~~~~~~~~~~~~~~----~~~~~~~------~~-----~~~~~~~l~~~~~~~i~~rr~---------~~~~dll~ 231 (415)
T 3mgx_A 180 ----EDMLIDLTNHAFGG----EDELFDG------MT-----PRQAHTEILVYFDELITARRK---------EPGDDLVS 231 (415)
T ss_dssp ----HHHHHHHHHHHTSC----CC----C------CC-----HHHHHHHHHHHHHHHHHHHHH---------SCCSSHHH
T ss_pred ----HHHHHHHHHHHHcc----cCcccch------HH-----HHHHHHHHHHHHHHHHHHHHh---------CCCCCHHH
Confidence 23444444333211 0011111 11 124556778888888887754 23579999
Q ss_pred HHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 294 VLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 294 ~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
.|++.. .++++++..++.++++||+|||+++++|++++|++||++|+|+++|
T Consensus 232 ~ll~~~-------~ls~~el~~~~~~ll~AG~eTTa~~l~~~l~~L~~~P~~~~~l~~E 283 (415)
T 3mgx_A 232 TLVTDD-------DLTIDDVLLNCDNVLIGGNETTRHAITGAVHALATVPGLLTALRDG 283 (415)
T ss_dssp HHHHCT-------TSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHSTTHHHHHHHT
T ss_pred HHHhCC-------CCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHCHHHHHHHHhC
Confidence 999753 5899999999999999999999999999999999999999999998
No 67
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450 fold, structural genomics, PSI, protein structure initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A* 3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Probab=99.95 E-value=6.5e-28 Score=226.66 Aligned_cols=240 Identities=15% Similarity=0.157 Sum_probs=176.8
Q ss_pred CCCCCcHHHHHHHhhcCCeeEEee-cCeeEEEeCCHHHHHHHHhhCCcccC-C-Cccc--cccc--cccc-CCceeEecC
Q 048567 59 IGQLPHVSLHSLSQKYGPIIQLKF-GLETVVVASSAEVAELILKTHDLTFA-S-RPAL--LAGK--HANF-NYLVMATAP 130 (352)
Q Consensus 59 ~~~~~~~~~~~~~~kYG~i~~i~~-g~~~~vvv~~~~~i~eil~~~~~~f~-~-r~~~--~~~~--~~~~-~g~~~~~~~ 130 (352)
+..+++..+.+| ++|||||++++ |+.++++++++++++++|.++ .|+ + ++.. .... .+.. .+.++++.
T Consensus 14 ~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 89 (396)
T 1n40_A 14 RGDRIPDAVAEL-RTREPIRKVRTITGAEAWLVSSYALCTQVLEDR--RFSMKETAAAGAPRLNALTVPPEVVNNMGNI- 89 (396)
T ss_dssp CSSSCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHHTCT--TEESGGGGSTTCCCSSCCSSCGGGGGHHHHH-
T ss_pred cccCccHHHHHH-HHhCCeeEeecCCCceEEEEecHHHHHHHHhCC--CcccccCccccccccccccCCchhhhhhhhH-
Confidence 345788999999 99999999997 888999999999999999875 366 5 5431 1111 1111 23344433
Q ss_pred CChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHH-HHHHHHHHHHHHhccccc
Q 048567 131 YGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLY-MFNLATMSRMLLGKRYTE 209 (352)
Q Consensus 131 ~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~-~~t~~vi~~~~fG~~~~~ 209 (352)
.|+++||++. +.|+++ ++.+.+.+.++++++++.|.+ .++++|+...+. .+++++|+. +||.+.+.
T Consensus 90 ---~h~~~R~~~~-~~fs~~-~~~~~~~i~~~~~~l~~~l~~-------~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~ 156 (396)
T 1n40_A 90 ---ADAGLRKAVM-KAITPK-APGLEQFLRDTANSLLDNLIT-------EGAPADLRNDFADPLATALHCK-VLGIPQED 156 (396)
T ss_dssp ---HHTTCHHHHH-HHTSSC-STTHHHHHHHHHHHHHHHHHH-------HCSCEETTTTTHHHHHHHHHHH-HHTCCGGG
T ss_pred ---HHHHHHHHHH-HhhChH-HHHhHHHHHHHHHHHHHHHHh-------cCCCccHHHHHHHHhHHHHHHH-HhCCChhh
Confidence 9999999996 789999 999999999999999999965 145799986665 799999998 79987642
Q ss_pred ccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCc
Q 048567 210 DNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRKSFNEHGTK 289 (352)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 289 (352)
...+......++.. ....| .++..+..+.+ +++.++|+ .. ..+.
T Consensus 157 --------~~~~~~~~~~~~~~------~~~~p----------~~~~~~~~~~~-~~~~~~i~----~~-------~~~~ 200 (396)
T 1n40_A 157 --------GPKLFRSLSIAFMS------SADPI----------PAAKINWDRDI-EYMAGILE----NP-------NITT 200 (396)
T ss_dssp --------HHHHHHTHHHHTBC------CSSCC----------HHHHHHHHHHH-HHHHHHHH----CT-------TCCS
T ss_pred --------HHHHHHHHHHHhcc------ccCCC----------HHHHHHHHHHH-HHHHHHHh----CC-------CCCC
Confidence 22343333332210 00011 13445555566 66666665 11 2357
Q ss_pred cHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 290 DMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 290 d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
|+++.|++....++ +..++++++.+++.++++||+|||+++++|++++|++||++|+|+|+|
T Consensus 201 dll~~ll~~~~~~~-~~~l~~~~i~~~~~~~~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~~E 262 (396)
T 1n40_A 201 GLMGELSRLRKDPA-YSHVSDELFATIGVTFFGAGVISTGSFLTTALISLIQRPQLRNLLHEK 262 (396)
T ss_dssp HHHHHHHHHHTSGG-GTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHC
T ss_pred CHHHHHHHhhcccc-cCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcChHHHHHHHhC
Confidence 99999998651101 346999999999999999999999999999999999999999999998
No 68
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase, oxidoreductase; HET: HEM; 2.00A {Sphingopyxis macrogoltabida}
Probab=99.95 E-value=5.1e-26 Score=215.74 Aligned_cols=247 Identities=15% Similarity=0.140 Sum_probs=178.4
Q ss_pred CCCcHHHHHHHhhcCCeeEEee-cCeeEEEeCCHHHHHHHHhhCCcccCCCcc---ccccc-----ccccCCceeEecCC
Q 048567 61 QLPHVSLHSLSQKYGPIIQLKF-GLETVVVASSAEVAELILKTHDLTFASRPA---LLAGK-----HANFNYLVMATAPY 131 (352)
Q Consensus 61 ~~~~~~~~~~~~kYG~i~~i~~-g~~~~vvv~~~~~i~eil~~~~~~f~~r~~---~~~~~-----~~~~~g~~~~~~~~ 131 (352)
.+++..+.+|.++ |||+++.+ ++.++++|++++.+++++.+. ..|++++. ..... .....+.+.++..+
T Consensus 38 ~~p~~~~~~lr~~-gpv~~~~~~~~~~~~vvt~~~~v~~vl~d~-~~fs~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 115 (426)
T 3rwl_A 38 DSVGEYFKRLRKD-DPVHYCADSAFGPYWSITKYNDIMHVDTNH-DIFSSDAGYGGIIIDDGIQKGGDGGLDLPNFIAMD 115 (426)
T ss_dssp TCHHHHHHHHHHH-CSEEEESCCTTCSEEEECSHHHHHHHHHCT-TTEECCGGGTCSSSSCCC-------CCCCCGGGCC
T ss_pred CCccHHHHHHHhc-CCeeeccCCCCCCEEEEcCHHHHHHHHcCC-cccccccccCCCCcccccccccccccccCcccccC
Confidence 4577788888765 99998886 556799999999999999776 35766542 11111 00011112334557
Q ss_pred ChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHH-HHHHHHHHHHHHHhcccccc
Q 048567 132 GPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRL-YMFNLATMSRMLLGKRYTED 210 (352)
Q Consensus 132 g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~ 210 (352)
|+.|+++||++. +.|++++++.+.+.+.+.++.+++.|. .++++|+...+ ..++.++++. +||...+..
T Consensus 116 g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~--------~~~~~dl~~~~~~~~~~~vi~~-l~G~~~~~~ 185 (426)
T 3rwl_A 116 RPRHDEQRKAVS-PIVAPANLAALEGTIRERVSKTLDGLP--------VGEEFDWVDRVSIEITTQMLAT-LFDFPFEER 185 (426)
T ss_dssp TTHHHHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHTSC--------SSSCEEHHHHTHHHHHHHHHHH-HHTCCGGGT
T ss_pred chHHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHhh--------cCCCcchHHHHHHHHHHHHHHH-HcCCCHHHH
Confidence 999999999985 899999999999999999999988872 35689987777 6888888886 799754332
Q ss_pred cccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCcc
Q 048567 211 NQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRKSFNEHGTKD 290 (352)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d 290 (352)
..+......+ .. ++..... ...++..+..+.+.+++.+++++++. .....|
T Consensus 186 --------~~~~~~~~~~----~~------~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~r~~--------~~~~~d 236 (426)
T 3rwl_A 186 --------RKLTRWSDVT----TA------APGGGVV---ESWDQRKTELLECAAYFQVLWNERVN--------KDPGND 236 (426)
T ss_dssp --------HHHHHHHHHH----TC------CTTSSSC---SSHHHHHHHHHHHHHHHHHHHHHHHT--------SCCCSS
T ss_pred --------HHHHHHHHHH----Hh------ccCcccc---ccHHHHHHHHHHHHHHHHHHHHHHhh--------cCCCCC
Confidence 2232222111 11 1111111 11344556667888888888877631 245689
Q ss_pred HHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 291 MVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 291 ~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
+++.|++... ++.++++++..++.++++||+|||+++|+|++++|++||++|+|+++|
T Consensus 237 ll~~ll~~~~----~~~ls~~el~~~~~~l~~AG~eTTa~~l~~~l~~L~~~P~~~~~lr~E 294 (426)
T 3rwl_A 237 LISMLAHSPA----TRNMTPEEYLGNVLLLIVGGNDTTRNSMTGGVLALHKNPDQFAKLKAN 294 (426)
T ss_dssp HHHHHHHCGG----GGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHC
T ss_pred HHHHHHhccc----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHhC
Confidence 9999998754 235899999999999999999999999999999999999999999997
No 69
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM; 1.80A {Parthenium argentatum} PDB: 3dam_A* 3dbm_A*
Probab=99.95 E-value=9.8e-28 Score=230.16 Aligned_cols=281 Identities=11% Similarity=0.063 Sum_probs=172.0
Q ss_pred CcCCCCCCCCCCCCCcccccccC-----CC-CCcHHHHHHHhhcCC-eeEEeecC-------eeEEEeCCHHHHHHHHhh
Q 048567 37 NKLNLLPPPGPKPWPLIGNLNLI-----GQ-LPHVSLHSLSQKYGP-IIQLKFGL-------ETVVVASSAEVAELILKT 102 (352)
Q Consensus 37 ~~~~~~~~PGp~~~pi~G~l~~~-----~~-~~~~~~~~~~~kYG~-i~~i~~g~-------~~~vvv~~~~~i~eil~~ 102 (352)
.+.+ .||||++||++|+++++ .. +++.++.++++|||| ||++++++ ..+|++++.+..+.++..
T Consensus 6 ~Pl~--~iPGp~g~P~iG~~~~~~~~~~~~g~~~~~~~~~~~kyG~~vf~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~ 83 (473)
T 3dan_A 6 KPLR--EIPGSYGIPFFQPIKDRLEYFYGTGGRDEYFRSRMQKYQSTVFRANMPPGPFVSSNPKVIVLLDAKSFPILFDV 83 (473)
T ss_dssp SCBC--CCCCCCCSTTHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSEEEEECTTCTTTCSCCEEEEECSTTTGGGGGCT
T ss_pred CCCC--CCCCCCCCcchhhHHHHHHHHHhhcCchHHHHhHHHHhCCeEEEecCCCCCccccCCceEEeecccccceecCC
Confidence 3455 79999999999999875 34 678889999999999 99999863 344555555544433321
Q ss_pred ----CCcccCCCcccccccccccCCceeEecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCC
Q 048567 103 ----HDLTFASRPALLAGKHANFNYLVMATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSS 178 (352)
Q Consensus 103 ----~~~~f~~r~~~~~~~~~~~~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~ 178 (352)
+...+..+... ............++..+|+.|+++|+++. +.|+++ ++.+.+.+++.++++++.|.+. .
T Consensus 84 ~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~h~~~R~~~~-~~f~~~-~~~~~~~i~~~~~~ll~~~~~~----~ 156 (473)
T 3dan_A 84 SKVEKKDLFTGTYMP-STKLTGGYRVLSYLDPSEPRHAQLKNLLF-FMLKNS-SNRVIPQFETTYTELFEGLEAE----L 156 (473)
T ss_dssp TTEECSSCTTSSSCC-CGGGGTTSCCGGGCCTTSHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHH----H
T ss_pred cceeccccccccccC-CccccCCCcceeeeCCCcHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHH----h
Confidence 11112111110 01111111122334456999999999996 789984 8999999999999999999752 1
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHH
Q 048567 179 PSSTPVHLKDRLYMFNLATMSRMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKA 258 (352)
Q Consensus 179 ~~~~~vd~~~~~~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~ 258 (352)
.+++++|+.+.+..+++++++.++||.++...+ ....+......+... ..+|++... .+.+...+
T Consensus 157 ~~~~~vdl~~~~~~~~~~~i~~~~~G~~~~~~~-----~~~~~~~~~~~~~~~-------~~~p~~~~~-lp~~~~~~-- 221 (473)
T 3dan_A 157 AKNGKAAFNDVGEQAAFRFLGRAYFNSNPEETK-----LGTSAPTLISSWVLF-------NLAPTLDLG-LPWFLQEP-- 221 (473)
T ss_dssp HHHSCEECHHHHHHHHHHHHHHHHHSCCGGGST-----TTTCHHHHHHHHHHH-------HHGGGCCCS-CCHHHHHH--
T ss_pred ccCCcccHHHHHHHHHHHHHHHHHcCCCCCchh-----hhhhHHHHHHHHHHH-------hccchhhhc-chHHHHHH--
Confidence 234689999999999999999999999876522 111222222222111 112322210 11110110
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHh-cccccchHHHHHHHHH
Q 048567 259 VKKKADKFYEHVLDEHERHAKRKSFNEHGTKDMVDVLLQLADDPTLEVKVERDHIKAAIQDLL-LGGIETSAITTEWAMS 337 (352)
Q Consensus 259 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~-~aG~dTta~tl~~~l~ 337 (352)
....+..-...+++..+.. ...-.|+++.+++..+ +..++++++..+++.+. +||+|||+++++|+++
T Consensus 222 -~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ll~~~~----~~~l~~~ei~~~~l~~~g~~~~~tta~~l~~~l~ 290 (473)
T 3dan_A 222 -LLHTFRLPAFLIKSTYNKL------YDYFQSVATPVMEQAE----KLGVPKDEAVHNILFAVCFNTFGGVKILFPNTLK 290 (473)
T ss_dssp -HHSSSCCCGGGTHHHHHHH------HHHHHHHCHHHHHHHH----HHTCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred -HhhhccchHhhhhhchhhh------HHHHHHHHHHHHHhHh----hcCCCHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 0000000000000000000 0001244455555332 23689999998886666 7888889999999999
Q ss_pred HHhh-ChHHHHHhhhC
Q 048567 338 ELLK-NPRVIQKATEE 352 (352)
Q Consensus 338 ~L~~-~Pevq~kl~~E 352 (352)
+|++ ||++|+|+|+|
T Consensus 291 ~L~~~~P~~~~~lr~E 306 (473)
T 3dan_A 291 WIGLAGENLHTQLAEE 306 (473)
T ss_dssp HHHHHCHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHH
Confidence 9999 79999999987
No 70
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A {Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Probab=99.94 E-value=4.2e-27 Score=222.50 Aligned_cols=243 Identities=12% Similarity=0.113 Sum_probs=176.0
Q ss_pred CCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCcc-ccccc-----ccccCCceeEecCCChh
Q 048567 61 QLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPA-LLAGK-----HANFNYLVMATAPYGPH 134 (352)
Q Consensus 61 ~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~-~~~~~-----~~~~~g~~~~~~~~g~~ 134 (352)
.+++.. ++.++|||++++++|+.. ++|++++.+++||.++. |+.... ..... .......+.++..+|+.
T Consensus 33 ~~P~~~--~~lr~~gpv~~~~~g~~~-~vv~~~~~v~~vL~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dg~~ 107 (416)
T 3p3o_A 33 NFSWDS--PEVAEAREKSWIARTPLA-LLVLRYAEADQLARDKR--LISGFRGLVDMVGTPEGPVRDFMVDFLQSLDGAD 107 (416)
T ss_dssp TCCTTS--HHHHHHHHHCSEEECSSS-EEECSHHHHHHHHHCTT--EECSHHHHHHHHTCCSSHHHHHHHHSGGGCCHHH
T ss_pred cCCchH--HHHHHhCCccccccCCCc-eEEeCHHHHHHHHcCcc--cccCCccccccccccccchhhhhcCccccCCchH
Confidence 456665 666789999999988767 89999999999998764 332211 00000 00000112344567999
Q ss_pred HHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHH-HHHHHHHHHHHHHhccccccccc
Q 048567 135 WRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRL-YMFNLATMSRMLLGKRYTEDNQN 213 (352)
Q Consensus 135 Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~ 213 (352)
|+++||++. +.|++++++.+.+.+++.++.+++.| .. +++|+...+ ..+++++||. +||...+.
T Consensus 108 h~~~Rr~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l-~~--------g~~d~~~~~~~~~~~~vi~~-l~G~~~~~---- 172 (416)
T 3p3o_A 108 HRRLRGLAT-HPFTPRRITAVQPFVRSTVEQLIDKL-PQ--------GDFDFVQHFPHPLPALVMCQ-LLGFPLED---- 172 (416)
T ss_dssp HHHHHHTTC-GGGSHHHHHHHHHHHHHHHHHHHHTC-CS--------SSEEHHHHTTTHHHHHHHHH-HHTCCGGG----
T ss_pred HHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHhh-cc--------CCccHHHHHHHHHHHHHHHH-HhCCCHHH----
Confidence 999999996 89999999999999999999999888 41 248976555 5699999998 58975432
Q ss_pred chhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHH
Q 048567 214 NIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRKSFNEHGTKDMVD 293 (352)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~l~ 293 (352)
...+......+.. .+... ......++..++.+.+.+++.++|+++++ ....|+++
T Consensus 173 ----~~~~~~~~~~~~~---------~~~~~---~~~~~~~~~~~~~~~l~~~~~~~i~~rr~---------~~~~dll~ 227 (416)
T 3p3o_A 173 ----YDTVGRLSIETNL---------GLALS---NDQDILVKVEQGLGRMFDYLVAAIEKRKV---------EPGDDLTS 227 (416)
T ss_dssp ----HHHHHHHHHTTCG---------GGTTC---SCHHHHHHHHHHHHHHHHHHHHHHHHHHH---------SCCSSHHH
T ss_pred ----HHHHHHHHHHHHh---------hcccc---cchhhHHHHHHHHHHHHHHHHHHHHHHHh---------CCCccHHH
Confidence 2233322221111 11110 11223456677788888899888888764 24579999
Q ss_pred HHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 294 VLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 294 ~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
.|++...+ + .++++++.+++.++++||+|||+++|+|++++|++||++|+|+++|
T Consensus 228 ~ll~~~~~---~-~ls~~el~~~~~~l~~AG~eTTa~~l~~~l~~L~~~P~~~~~l~~e 282 (416)
T 3p3o_A 228 DIVRAFHD---G-VLDDYELRTLVATVLVAGYETTNHQLALAMYDFAQHPDQWMKIKEN 282 (416)
T ss_dssp HHHHHHHT---T-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHC
T ss_pred HHHHhhcc---C-CCCHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHCHHHHHHHHhC
Confidence 99987543 2 6999999999999999999999999999999999999999999987
No 71
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX, bioremediation, electron transport; HET: HEM; 1.49A {Rhodococcus} PDB: 2wiv_A*
Probab=99.94 E-value=5.2e-26 Score=213.54 Aligned_cols=243 Identities=15% Similarity=0.100 Sum_probs=175.8
Q ss_pred CCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCcccccccccccCCceeEecCCChhHHHhhh
Q 048567 61 QLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPALLAGKHANFNYLVMATAPYGPHWRQTRK 140 (352)
Q Consensus 61 ~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~~~~~~~~~g~~~~~~~~g~~Wk~~Rr 140 (352)
.+++..+.++. ++|||+++..| .+++++++.+++++... .|+.++...........+.+ ++..+|+.|+++||
T Consensus 20 ~dp~~~~~~lr-~~~pv~~~~~g---~~~v~~~~~v~~~l~d~--~fs~~~~~~~~~~~~~~~~~-l~~~dg~~h~~~R~ 92 (394)
T 2wiy_A 20 NNPYPWYRRLQ-QDHPVHKLEDG---TYLVSRYADVSHFAKLP--IMSVEPGWADAGPWAVASDT-ALGSDPPHHTVLRR 92 (394)
T ss_dssp HCCHHHHHHHH-HHCSEEECTTS---CEEECCHHHHHHHTTST--TEECHHHHHTCGGGGGGGGS-GGGCCTTHHHHHHH
T ss_pred cCccHHHHHHH-hcCCeEEecCC---eEEEcCHHHHHHHHcCC--Cccccccccccccchhcccc-cccCCchHHHHHHH
Confidence 35677777775 56899976554 68899999999999654 46554322111111111233 35567999999999
Q ss_pred hhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHHHHHHHHHHHhcccccccccchhhHHH
Q 048567 141 TFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRLYMFNLATMSRMLLGKRYTEDNQNNIVTAKE 220 (352)
Q Consensus 141 ~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~ 220 (352)
++. +.|++++++.+.+.+++.++.+++.|. .++++|+...+..++.++++..+||...+. ...
T Consensus 93 ~~~-~~fs~~~~~~~~~~i~~~~~~l~~~~~--------~~~~~d~~~~~~~~~~~vi~~~~~G~~~~~--------~~~ 155 (394)
T 2wiy_A 93 QTN-KWFTPKLVDGWVRTTRELVGDLLDGVE--------AGQVIEARRDLAVVPTHVTMARVLQLPEDD--------ADA 155 (394)
T ss_dssp HHH-TTCSHHHHHHHTHHHHHHHHHHHHTCC--------TTCCEEHHHHHTHHHHHHHHHHHHTCCCCC--------HHH
T ss_pred HHH-hccCHHHHHHHHHHHHHHHHHHHHHHh--------ccCCeeHHHHHHhhhHHHHHHHHcCCCHhH--------HHH
Confidence 985 899999999999999999998887763 345799999999999999999999986432 223
Q ss_pred HHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHhccC
Q 048567 221 FTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRKSFNEHGTKDMVDVLLQLAD 300 (352)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~l~~lL~~~~ 300 (352)
+.+.+...+ .. ....|.. ...++..++.+.+.+++.++|++++. .+..|+++.|++...
T Consensus 156 ~~~~~~~~~---~~---~~~~p~~------~~~~~~~~~~~~l~~~~~~~i~~rr~---------~~~~dll~~Ll~~~~ 214 (394)
T 2wiy_A 156 VMEAMFEAM---LM---QSAEPAD------GDVDRAAVAFGYLSARVAEMLEDKRV---------NPGDGLADSLLDAAR 214 (394)
T ss_dssp HHHHHHHHH---GG---GSSSCCT------THHHHHHHHHHHHHHHHHHHHHHHHH---------SCCSSHHHHHHHHHH
T ss_pred HHHHHHHHH---Hh---ccCCccc------hHHHHHHHHHHHHHHHHHHHHHHhhc---------CCCCcHHHHHHHhhh
Confidence 333322221 10 0112211 12234455666777788888877653 234689999998653
Q ss_pred CCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 301 DPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 301 ~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
+ +.++++++.+++.++++||+|||+++|+|++++|++||++|+|+++|
T Consensus 215 ~----~~ls~~el~~~~~~l~~AG~eTTa~~l~~~l~~L~~~P~~~~~l~~e 262 (394)
T 2wiy_A 215 A----GEITESEAIATILVFYAVGHMAIGYLIASGIELFARRPEVFTAFRND 262 (394)
T ss_dssp T----TSSCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHCHHHHHHHHHC
T ss_pred c----CCCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHCHHHHHHHHhC
Confidence 2 25999999999999999999999999999999999999999999987
No 72
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus} PDB: 2rfc_A*
Probab=99.94 E-value=8.1e-27 Score=214.98 Aligned_cols=215 Identities=14% Similarity=0.115 Sum_probs=154.4
Q ss_pred hhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCcccccccccccCCceeEecCCChhHHHhhhhhhhhcCChhh
Q 048567 72 QKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPALLAGKHANFNYLVMATAPYGPHWRQTRKTFKTQILSPKR 151 (352)
Q Consensus 72 ~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~~~~~~~~~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~ 151 (352)
++||||+++ | ++++++|++++++|.++. .|++++...... ..+.++++ .+|+.|+++||++. +.|++++
T Consensus 2 r~~gpv~~~--g---~~vv~~~~~v~~vl~~~~-~f~~~~~~~~~~---~~~~~l~~-~~g~~~~~~R~~~~-~~fs~~~ 70 (343)
T 2rfb_A 2 RLNDPVHYD--G---AWHVYKYSDVKHVLMNDK-IFSSNPGNRYSN---AGGISFIT-MDNPEHKEFRDISA-PYFLPSK 70 (343)
T ss_dssp -CCCCEEET--T---EEEECSHHHHHHHHHCTT-TEESSCSSCCC------CCGGGG-CCHHHHHHHHHHHH-HHHSHHH
T ss_pred CCcCCeeee--C---eEEEcCHHHHHHHHhChh-hcccCCcCCCCC---cccccccc-CCchHHHHHHHHhh-hhcCHHH
Confidence 689999965 3 899999999999998764 688876321111 12445544 46999999999995 8899999
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHH-HHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHH
Q 048567 152 LVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRL-YMFNLATMSRMLLGKRYTEDNQNNIVTAKEFTEIVDEVFF 230 (352)
Q Consensus 152 l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (352)
++++.+.++++++.+++.| . ++|+.+.+ ..+++|+|+.+ ||.+.+. ...+......++.
T Consensus 71 l~~~~~~i~~~~~~l~~~l-------~----~~d~~~~~~~~~~~~vi~~~-~G~~~~~--------~~~~~~~~~~~~~ 130 (343)
T 2rfb_A 71 INDYKDFIEETSNDLIKNI-------D----NKDIISEYAVRLPVNIISKI-LGIPDSD--------MPLFKLWSDYIIG 130 (343)
T ss_dssp HGGGHHHHHHHHHHHHTTC-------T----TSCHHHHTTTHHHHHHHHHH-HTCCGGG--------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhc-------c----ccCHHHHHhhhhhHHHHHHH-cCCCHHH--------HHHHHHHHHHHhh
Confidence 9999999999998887665 1 68998866 89999999998 9987642 2234443333321
Q ss_pred hhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHhccCCCCcCCCCCH
Q 048567 231 ISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRKSFNEHGTKDMVDVLLQLADDPTLEVKVER 310 (352)
Q Consensus 231 ~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~~~~~~~ 310 (352)
. ..|.+. . .++. +..+.+.+++.+++ +.| ++.|++...+ +..+++
T Consensus 131 ~--------~~p~~~-----~-~~~~-~~~~~~~~~~~~~i----------------~~d-l~~ll~~~~~---~~~l~~ 175 (343)
T 2rfb_A 131 N--------KRDENF-----N-YVNN-RMVSRLLEIFKSDS----------------HGI-INVLAGSSLK---NRKLTM 175 (343)
T ss_dssp S--------CCSSHH-----H-HHHH-HHHHHHHHHHHSCC----------------SSH-HHHHHTCBCS---SSBCCH
T ss_pred c--------cCcchh-----h-HHHH-HHHHHHHHHHHHHH----------------hcc-HHHHHhhhcC---CCCCCH
Confidence 1 013210 1 1222 32222222221111 467 9999976432 346999
Q ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 311 DHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 311 ~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
+++.+++.++++||+|||+++++|++++|++||++|+|+++|
T Consensus 176 ~ei~~~~~~~~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~~E 217 (343)
T 2rfb_A 176 DEKIKYIMLLIIGGNETTTNLIGNMIRVIDENPDIIDDALKN 217 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCHHHHHHHHcC
Confidence 999999999999999999999999999999999999999998
No 73
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Probab=99.93 E-value=9.3e-26 Score=209.82 Aligned_cols=225 Identities=15% Similarity=0.113 Sum_probs=164.8
Q ss_pred cHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCcc-cc-cc-----c-ccccC---CceeEecCCC
Q 048567 64 HVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPA-LL-AG-----K-HANFN---YLVMATAPYG 132 (352)
Q Consensus 64 ~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~-~~-~~-----~-~~~~~---g~~~~~~~~g 132 (352)
+..+.+| ++||||++++ | ++++++|+.++++|.++ ..|++++. .. .. . .+. + +.++++ .+|
T Consensus 2 ~~~~~~l-r~~gpv~~~~-g---~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~-~dg 73 (367)
T 3b4x_A 2 YDWFKQM-RKESPVYYDG-K---VWNLFKYEDCKMVLNDH-KRFSSNLTGYNDKLEMLRSGKVFF-DIPTRYTMLT-SDP 73 (367)
T ss_dssp HHHHHHH-HHHCSEEECS-S---SEEECSHHHHHHHHHCT-TTEECCCSSTTTTHHHHHHTCCCC-CCGGGSSGGG-CCT
T ss_pred CHHHHHH-HHcCCceeeC-C---EEEEecHHHHHHHHcCc-hhhccCcccccccccccccccchh-hccccccccc-CCc
Confidence 4556677 5899999877 4 78999999999999876 36877642 11 11 1 111 1 245554 469
Q ss_pred hhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHH-HHHHHHHHHHHHHhccccccc
Q 048567 133 PHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRL-YMFNLATMSRMLLGKRYTEDN 211 (352)
Q Consensus 133 ~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~ 211 (352)
+.|+++||++. +.|++++++. +.+++.++++++.| . | ++|+...+ ..+++++|+. +||.+ +.
T Consensus 74 ~~h~~~R~~~~-~~fs~~~l~~--~~i~~~~~~l~~~l-------~--g-~~d~~~~~~~~~~~~vi~~-~~G~~-~~-- 136 (367)
T 3b4x_A 74 PLHDELRNLTA-DAFNPSNLPV--DFVREVTVKLLSEL-------D--E-EFDVIESFAIPLPILVISK-MLGIN-PD-- 136 (367)
T ss_dssp THHHHHHHTTG-GGGSGGGSCH--HHHHHHHHHHHHTC-------C--S-EEEHHHHTTTHHHHHHHHH-HHTCC-CC--
T ss_pred hhHHHHHHHHH-HhcCHhhhcc--hHHHHHHHHHHHhc-------c--C-CcchHHHHHHhhHHHHHHH-HcCCC-Cc--
Confidence 99999999996 7899999987 99999988887765 2 3 49999766 7999999999 79987 32
Q ss_pred ccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccH
Q 048567 212 QNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRKSFNEHGTKDM 291 (352)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~ 291 (352)
...+......++.... ..|.. . ++. +..+.+.+++..+|+++++ ....|+
T Consensus 137 ------~~~~~~~~~~~~~~~~------~~p~~--~------~~~-~~~~~~~~~~~~~i~~r~~---------~~~~dl 186 (367)
T 3b4x_A 137 ------VKKVKDWSDLVALRLG------RADEI--F------SIG-RKYLELISFSKKELDSRKG---------KEIVDL 186 (367)
T ss_dssp ------HHHHHHHHHHHHTTTT------STTGG--G------CCC-HHHHHHHHHHHHHHHHHTT---------TCCSSH
T ss_pred ------HHHHHHHHHHHHhccC------CChhh--H------HHH-HHHHHHHHHHHHHHHHHhc---------CCCCCH
Confidence 1234444444332111 12211 1 111 4455667777777766542 235799
Q ss_pred HHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 292 VDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 292 l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
++.|++. .++++++.+++.++++||+|||+++|+|++++|++ |++|+|+++|
T Consensus 187 l~~ll~~--------~ls~~el~~~~~~l~~AG~eTt~~~l~~~l~~L~~-P~~~~~l~~e 238 (367)
T 3b4x_A 187 TGKIANS--------NLSELEKEGYFILLMIAGNETTTNLIGNAIEDFTL-YNSWDYVREK 238 (367)
T ss_dssp HHHHHTS--------SSCHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred HHHHHhc--------cCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhC-HHHHHHHHhC
Confidence 9999974 48999999999999999999999999999999999 9999999986
No 74
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.50A {Sulfolobus solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A* 1io9_A* 1io8_A*
Probab=99.93 E-value=7.6e-26 Score=210.49 Aligned_cols=225 Identities=18% Similarity=0.200 Sum_probs=163.8
Q ss_pred cHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCcc-----cccc--cc--ccc-CCceeEecCCCh
Q 048567 64 HVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPA-----LLAG--KH--ANF-NYLVMATAPYGP 133 (352)
Q Consensus 64 ~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~-----~~~~--~~--~~~-~g~~~~~~~~g~ 133 (352)
+..+.++ ++||||+++ | +.+++++++.++++|.+. ..|++++. .... .. +.. .|.++++ .+|+
T Consensus 2 ~~~~~~l-r~~Gpv~~~--g--~~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~g~ 74 (368)
T 1io7_A 2 YDWFSEM-RKKDPVYYD--G--NIWQVFSYRYTKEVLNNF-SKFSSDLTGYHERLEDLRNGKIRFDIPTRYTMLT-SDPP 74 (368)
T ss_dssp HHHHHHH-HHHCSEEEC--S--SCEEECSHHHHHHHHHCT-TTEECCCSSHHHHHHHHTTTCCCCSCGGGSSGGG-CCTT
T ss_pred CHHHHHH-HhcCCeEeE--C--CEEEEecHHHHHHHHcCc-cccccccccccccccccccccccccccccccccc-CCCh
Confidence 4556677 599999976 5 578999999999999975 36888764 1100 11 111 1244544 4699
Q ss_pred hHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHH-HHHHHHHHHHHHHhcccccccc
Q 048567 134 HWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRL-YMFNLATMSRMLLGKRYTEDNQ 212 (352)
Q Consensus 134 ~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~ 212 (352)
.|+++||++. +.|++++++.+.+.++++++++++.| +. + ++|+.+.+ ..+++|+|+.+ ||.+.+.
T Consensus 75 ~h~~~R~~~~-~~f~~~~~~~~~~~i~~~~~~l~~~l-~~-------g-~~d~~~~~~~~~~~~vi~~~-~G~~~~~--- 140 (368)
T 1io7_A 75 LHDELRSMSA-DIFSPQKLQTLETFIRETTRSLLDSI-DP-------R-EDDIVKKLAVPLPIIVISKI-LGLPIED--- 140 (368)
T ss_dssp HHHHHHGGGT-TTTCHHHHHHHHHHHHHHHHHHHHTC-CT-------T-SEEHHHHTTTHHHHHHHHHH-HTCCGGG---
T ss_pred HHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHHHHHh-hc-------C-CccHHHHHHHHHHHHHHHHH-hCCCHHH---
Confidence 9999999996 89999999999999999999999888 41 2 69999877 78999999999 9987542
Q ss_pred cchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHH
Q 048567 213 NNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRKSFNEHGTKDMV 292 (352)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~l 292 (352)
...+......+ ... .. .|. ..++..+..+.+.+++.+++ . +..|++
T Consensus 141 -----~~~~~~~~~~~----~~~-~~--~p~--------~~~~~~~~~~~~~~~~~~~i------~--------~~~d~l 186 (368)
T 1io7_A 141 -----KEKFKEWSDLV----AFR-LG--KPG--------EIFELGKKYLELIGYVKDHL------N--------SGTEVV 186 (368)
T ss_dssp -----HHHHHHHGGGC----TTS-CC--CTT--------CHHHHHHHHHHHHHHHHHHT------T--------SSCHHH
T ss_pred -----HHHHHHHHHHH----Hhc-cC--ChH--------HHHHHHHHHHHHHHHHHHHh------C--------CCCCHH
Confidence 12232221111 000 00 121 12344455555666555544 1 246899
Q ss_pred HHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 293 DVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 293 ~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
+.|++. .++++++.+++.++++||+|||+++++|++++|++|| +|+|+++|
T Consensus 187 ~~ll~~--------~l~~~ei~~~~~~l~~AG~dTt~~~l~~~l~~L~~~P-~~~~l~~E 237 (368)
T 1io7_A 187 SRVVNS--------NLSDIEKLGYIILLLIAGNETTTNLISNSVIDFTRFN-LWQRIREE 237 (368)
T ss_dssp HHHHTS--------SCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred HHHHhc--------cCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCh-HHHHHHhc
Confidence 999964 4899999999999999999999999999999999999 99999987
No 75
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A {Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A* 4dnz_A*
Probab=99.91 E-value=1.3e-23 Score=198.20 Aligned_cols=256 Identities=13% Similarity=0.103 Sum_probs=163.0
Q ss_pred CCCCcccc-ccc--CCCCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCccccccc---cccc
Q 048567 48 KPWPLIGN-LNL--IGQLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPALLAGK---HANF 121 (352)
Q Consensus 48 ~~~pi~G~-l~~--~~~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~~~~---~~~~ 121 (352)
.++|.+|- .+. +..+++..+.++ +++|||+ |.++.++++|++++.++++|.+.. .|++........ ....
T Consensus 18 ~~~P~~~~dp~~~~~~~dP~~~~~~l-R~~gPV~--~~~~~~~~~vt~~~~v~~vl~d~~-~fs~~~~~~~~~~~~~~~~ 93 (412)
T 4dnj_A 18 AGVPHLGIDPFALDYFADPYPEQETL-REAGPVV--YLDKWNVYGVARYAEVYAVLNDPL-TFCSSRGVGLSDFKKEKPW 93 (412)
T ss_dssp TTSCEECCCTTSHHHHHSCHHHHHHH-HHHCSSE--EETTTTEEEECSHHHHHHHHTCTT-TEESTTCSSSSCTTTSCCS
T ss_pred CCCCccCCCCCCHHHHhCcHHHHHHH-HhcCCEE--EECCCCEEEECCHHHHHHHHcCCc-cccCCCccccccccccccc
Confidence 45787772 221 234677777776 4689998 567777899999999999997553 454432211111 1111
Q ss_pred CCceeEecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcch-HHHHHHHHHHHHHH
Q 048567 122 NYLVMATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHL-KDRLYMFNLATMSR 200 (352)
Q Consensus 122 ~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~-~~~~~~~t~~vi~~ 200 (352)
...+.++..+|+.|+++||+++ +.|++++++++.+.|.+.++++++.+.. .++++|+ .+....++.++++.
T Consensus 94 ~~~~~~~~~Dg~~H~r~R~~~~-~~Fs~~~l~~~~~~i~~~~~~l~~~~~~-------~~~~~D~v~~~~~~~~~~~i~~ 165 (412)
T 4dnj_A 94 RPPSLILEADPPAHTRTRAVLS-KVLSPATMKRLRDGFAAAADAKIDELLA-------RGGNIDAIADLAEAYPLSVFPD 165 (412)
T ss_dssp SCCCTTTTCCTTHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHHHHHHH-------TTSEEETCCCCCCHHHHHHHHH
T ss_pred cCCCccccCChHHHHHHHhhcc-cccCHHHHHHhhHHHHHHHHHHHHhhhc-------cCCCceeHHHHHhhhhHhHHHH
Confidence 1223445567999999999986 8999999999999999999999999865 2345664 45566778888887
Q ss_pred HHHhcccccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 048567 201 MLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKR 280 (352)
Q Consensus 201 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 280 (352)
+ +|....... ....+ ...++..... . ....+..... ...+...+.++.++.
T Consensus 166 l-~g~~~~~~~-----~~~~~---~~~~~~~~~~------------~--~~~~~~~~~~----~~~~~~~~~~~~~~~-- 216 (412)
T 4dnj_A 166 A-MGLKQEGRE-----NLLPY---AGLVFNAFGP------------P--NELRQSAIER----SAPHQAYVAEQCQRP-- 216 (412)
T ss_dssp H-HTCCSTTGG-----GHHHH---HHHHHHHTSC------------S--SHHHHHHHHT----CHHHHHHHHHHTSGG--
T ss_pred H-cCCchhhhh-----hhhhh---hhcccccccc------------c--HHHHHHHHHH----HHHHHHHHHHHHHhh--
Confidence 6 554432221 12222 2222221110 0 0000111111 111122222322222
Q ss_pred ccCCCCCCccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 281 KSFNEHGTKDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 281 ~~~~~~~~~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
....|.++.++....+ +..++++|+..++.++++||+|||+++|+|++++|++||++|+|+++|
T Consensus 217 -----~~~~~~~~~l~~~~~~---~~~l~~~e~~~~~~~l~~AG~eTTa~~l~~~~~~L~~~P~~~~~Lr~~ 280 (412)
T 4dnj_A 217 -----NLAPGGFGACIHAFSD---TGEITPEEAPLLVRSLLSAGLDTTVNGIAAAVYCLARFPDEFARLRAD 280 (412)
T ss_dssp -----GSCTTSHHHHHHHTTT---TTSSCTTHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHCHHHHHHHHHC
T ss_pred -----ccccccchhhhHhhhh---ccchhHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhCHHHHHHHHhC
Confidence 1223445555554433 457999999999999999999999999999999999999999999986
No 76
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent, mono-oxygenases, oxidoreductase; HET: HEM; 2.00A {Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Probab=99.88 E-value=3.4e-21 Score=181.85 Aligned_cols=245 Identities=13% Similarity=0.165 Sum_probs=165.8
Q ss_pred CCcHHHHHHHhhcC-CeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCcccccccccccCCceeEecCCChhHHHhhh
Q 048567 62 LPHVSLHSLSQKYG-PIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPALLAGKHANFNYLVMATAPYGPHWRQTRK 140 (352)
Q Consensus 62 ~~~~~~~~~~~kYG-~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~~~~~~~~~g~~~~~~~~g~~Wk~~Rr 140 (352)
+++..+.++.+..+ +++..-.|+ ...+|++++.+++||... +.|+++....... .......++...+|+.|+++||
T Consensus 38 ~~~~~~~~lr~~~~~~~~~~~~~g-g~W~vtr~~dv~~vl~d~-~~fs~~~~~~~~~-~~~~~~~~~~~~D~p~H~r~Rr 114 (417)
T 4dxy_A 38 GYHEAWKKVQHPGIPDLIWTPFTG-GHWIATNGDTVKEVYSDP-TRFSSEVIFLPKE-AGEKAQMVPTKMDPPEHTPYRK 114 (417)
T ss_dssp CHHHHHHHHSCTTCCSEEEESSTT-SEEEECSHHHHHHHHTCT-TTEESSCCSSSTT-SSCSSCTTTTTCCTTTHHHHHH
T ss_pred ChHHHHHHHHhhCCCCEEecCCCC-CEEEECCHHHHHHHHcCc-hhccCCCcccccc-cccccccCcccCCcHHHHHHHH
Confidence 45667777765544 455222333 467789999999999654 3576554221111 1111223334457999999999
Q ss_pred hhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHH-HHHHHHHHHHHHHhcccccccccchhhHH
Q 048567 141 TFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRL-YMFNLATMSRMLLGKRYTEDNQNNIVTAK 219 (352)
Q Consensus 141 ~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~~~~~~ 219 (352)
+++ +.|++++++.+.+.|++.++++++.|.. ++++|+...+ ..+...+++. ++|..... ..
T Consensus 115 ll~-~~Fs~~~l~~~~~~i~~~~~~lld~l~~--------~g~~D~v~~~a~~l~~~vi~~-llg~~~~d--------~~ 176 (417)
T 4dxy_A 115 ALD-KGLNLAKIRKVEDKVREVASSLIDSFAA--------RGECDFAAEYAELFPVHVFMA-LADLPLED--------IP 176 (417)
T ss_dssp HHH-HHHCHHHHHTTHHHHHHHHHHHHHHHHT--------TSEEEHHHHTTTTHHHHHHHH-HTTCCGGG--------HH
T ss_pred Hhh-hhcCHHHHHHHHHHHHHHHHHHHHHhhh--------cCCeeeHHHHHhhhHHHHHHH-HcCCCHHH--------HH
Confidence 986 8999999999999999999999999864 2468865554 4566666665 46754322 22
Q ss_pred HHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHhcc
Q 048567 220 EFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEHVLDEHERHAKRKSFNEHGTKDMVDVLLQLA 299 (352)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~l~~lL~~~ 299 (352)
.+......+.. . ....| .........+.+.+..++..++++++ ..+..|+++.|+...
T Consensus 177 ~~~~~~~~~~~----~--~~~~~-------~~~~~~~~~~~~~~~~~~~~li~~rr---------~~~~ddl~s~L~~~~ 234 (417)
T 4dxy_A 177 VLSEYARQMTR----P--EGNTP-------EEMATDLEAGNNGFYAYVDPIIRARV---------GGDGDDLITLMVNSE 234 (417)
T ss_dssp HHHHHHHHHHS----C--CCSSH-------HHHHHHHHHHHHHHHHHHHHHHHHHT---------TCCCCSHHHHHHTCE
T ss_pred HHHhhhhhhcc----c--cccCh-------HHHHHHHHHHHHHHHHHHHHHHHHHh---------cCCccchhhhhcccc
Confidence 33333322211 0 00001 11123444556666777777776553 245679999999865
Q ss_pred CCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHhhhC
Q 048567 300 DDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKATEE 352 (352)
Q Consensus 300 ~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl~~E 352 (352)
.+ +..++++++..++..+++||+|||+++|+|++++|++||++|+|+++|
T Consensus 235 ~~---~~~~~~~e~~~~~~~ll~AG~eTTa~~l~~~~~~L~~~P~~~~~l~~e 284 (417)
T 4dxy_A 235 IN---GERIAHDKAQGLISLLLLGGLDTVVNFLSFFMIHLARHPELVAELRSD 284 (417)
T ss_dssp ET---TEECCHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTCHHHHHHHHHC
T ss_pred cc---CCccchhHHHHHHHHHHhhcccchhhHHHHHHHHHHhCchhhhhhccC
Confidence 43 457899999999999999999999999999999999999999999987
No 77
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.41 E-value=1.8e-15 Score=140.34 Aligned_cols=204 Identities=13% Similarity=0.062 Sum_probs=122.0
Q ss_pred CCCC-CCCCCccccccc-----CCCCCcHHHHHHHhhcCCeeEEeecCeeEEEeCCHHHHHHHHhhCCcccCCCcccc-c
Q 048567 43 PPPG-PKPWPLIGNLNL-----IGQLPHVSLHSLSQKYGPIIQLKFGLETVVVASSAEVAELILKTHDLTFASRPALL-A 115 (352)
Q Consensus 43 ~~PG-p~~~pi~G~l~~-----~~~~~~~~~~~~~~kYG~i~~i~~g~~~~vvv~~~~~i~eil~~~~~~f~~r~~~~-~ 115 (352)
+||| |.++|++|+..+ +..+++..+.+++++ ||+++. .+++++++++.+++||.+. .|+.++... .
T Consensus 35 ~ppG~~~~~P~~G~~~~~~~~~~~~dp~~~~~~lr~~--pV~~~~---~~~~vv~~~~~v~~vl~d~--~f~~~~~~~~~ 107 (381)
T 2yjn_B 35 MIRGLHWGYGSNGDPYPMLLCGHDDDPQRRYRSMRES--GVRRSR---TETWVVADHATARQVLDDP--AFTRATGRTPE 107 (381)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHTCCSCCHHHHHHHHHH--CEEECS---SSCEEECSHHHHHHHHHCS--SEESSCCCCCH
T ss_pred CCCcccccccccCCchhhcCchhccCchHHHHHHHhC--CceeCC---CCEEEEcCHHHHHHHHcCC--CcCCCcccccc
Confidence 5677 447899998644 345678888888865 999644 4689999999999999863 576653210 0
Q ss_pred c-----cccccCCceeEecCCChhHHHhhhhhhhhcCChhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHH
Q 048567 116 G-----KHANFNYLVMATAPYGPHWRQTRKTFKTQILSPKRLVQSEYIRVEERKALLFKMYKSSSSSSPSSTPVHLKDRL 190 (352)
Q Consensus 116 ~-----~~~~~~g~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~ 190 (352)
. ......+.++++. +|+.| . +.|+ . .+.|++.++++++.|. +++|+...+
T Consensus 108 ~~~~~~~~~~~~~~~l~~~-dg~~H-------~-~~Ft-----~-~~~i~~~~~~ll~~~~----------g~~Dl~~~~ 162 (381)
T 2yjn_B 108 WMRAAGAPPAEWAQPFRDV-HAASW-------E-GEVP-----D-VGELAESFAGLLPGAG----------ARLDLVGDF 162 (381)
T ss_dssp HHHHHTCCHHHHTHHHHHH-HHCCC-------C-SCCC-----C-CSCHHHHTSTTSCC----------------CCCCC
T ss_pred cccccccccchhhhhhhhC-Cchhh-------h-hccC-----C-hHHHHHHHHHHHHhcc----------CcchHHHHH
Confidence 0 0011012344444 48888 2 5677 3 6788888877776652 368888666
Q ss_pred -HHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHhhcCCCcccccccccccCccchHHHHHHHHHHHHHHHHH
Q 048567 191 -YMFNLATMSRMLLGKRYTEDNQNNIVTAKEFTEIVDEVFFISGILDIGDAIPWLAFLDLQGNVKRMKAVKKKADKFYEH 269 (352)
Q Consensus 191 -~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~ 269 (352)
..+++++||.+ ||...+. . .+...+..... .+ +.... .++.
T Consensus 163 a~~l~~~vi~~l-~G~~~~~-------~--~~~~~~~~~~~----------~~----~~~~~-~~~~------------- 204 (381)
T 2yjn_B 163 AWQVPVQGMTAV-LGAAGVL-------R--GAAWDARVSLD----------AQ----LSPQQ-LAVT------------- 204 (381)
T ss_dssp CTHHHHHHHHTC------CC-------H--HHHHHHTTHHH----------HT----TSCCC-HHHH-------------
T ss_pred HHHHHHHHHHHH-cCCCHHH-------H--HHHHHHHHhcc----------CC----CCHHH-HHHH-------------
Confidence 69999999995 9986532 1 22211110000 01 10011 0100
Q ss_pred HHHHHHHHhccccCCCCCCccHHHHHHhccCCCCcCCCCCHHHHHHHHHHHhcccccchHHHHHHHHHHHhhChHHHHHh
Q 048567 270 VLDEHERHAKRKSFNEHGTKDMVDVLLQLADDPTLEVKVERDHIKAAIQDLLLGGIETSAITTEWAMSELLKNPRVIQKA 349 (352)
Q Consensus 270 ~i~~~~~~~~~~~~~~~~~~d~l~~lL~~~~~~~~~~~~~~~~i~~~~~~l~~aG~dTta~tl~~~l~~L~~~Pevq~kl 349 (352)
.+.. +.++ + +++..+++||+|||+++++|++++|++||++|+|+
T Consensus 205 -----~~~~--------------~~l~-------------~----~~~~~ll~aG~eTt~~~l~~~l~~L~~~P~~~~~l 248 (381)
T 2yjn_B 205 -----EAAV--------------AALP-------------A----DPALRALFAGAEMTANTVVDAVLAVSAEPGLAERI 248 (381)
T ss_dssp -----HHHH--------------HHCC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred -----HHHH--------------HHHH-------------H----HHHHHHHHHhhhHHHHHHHHHHHHHHHCHHHHHHH
Confidence 0000 0011 0 56888999999999999999999999999999999
Q ss_pred hhC
Q 048567 350 TEE 352 (352)
Q Consensus 350 ~~E 352 (352)
++|
T Consensus 249 ~~e 251 (381)
T 2yjn_B 249 ADD 251 (381)
T ss_dssp HHC
T ss_pred hhC
Confidence 987
No 78
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.28 E-value=5.3 Score=28.60 Aligned_cols=59 Identities=14% Similarity=0.127 Sum_probs=40.4
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeec--------CeeEEEeCCHHHHHHHHhhCCcccCCC
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG--------LETVVVASSAEVAELILKTHDLTFASR 110 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g--------~~~~vvv~~~~~i~eil~~~~~~f~~r 110 (352)
--++||++.- -....+.++..+||+|..+++- +.-+|...+++.++.++..++..+.+|
T Consensus 13 ~lfV~~Lp~~--~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr 79 (103)
T 1s79_A 13 SVYIKGFPTD--ATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKET 79 (103)
T ss_dssp CEEEECCCTT--CCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTT
T ss_pred EEEEECCCCC--CCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCE
Confidence 4567887542 2345677888999999888863 234666789999999987544444433
No 79
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.23 E-value=1.9 Score=30.69 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=44.8
Q ss_pred CcccccccC-CC-CCcHHHHHHHhhcC-CeeEEeecCeeEEEeCCHHHHHHHHhh-CCcccCCCcc
Q 048567 51 PLIGNLNLI-GQ-LPHVSLHSLSQKYG-PIIQLKFGLETVVVASSAEVAELILKT-HDLTFASRPA 112 (352)
Q Consensus 51 pi~G~l~~~-~~-~~~~~~~~~~~kYG-~i~~i~~g~~~~vvv~~~~~i~eil~~-~~~~f~~r~~ 112 (352)
-++|||..- .. .+...+.++..+|| +|..+ .|+.=+|...+.+.++.++.+ ++..+.+|+.
T Consensus 12 lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 12 LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-TGCSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-ecCEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 448998764 21 23445788999995 99987 578889999999999999875 5555666664
No 80
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=79.07 E-value=8.1 Score=25.85 Aligned_cols=51 Identities=18% Similarity=0.167 Sum_probs=35.4
Q ss_pred cccccccCCCC----CcHHHHHHHhhcCCeeEEeec-------CeeEEEeCCHHHHHHHHhh
Q 048567 52 LIGNLNLIGQL----PHVSLHSLSQKYGPIIQLKFG-------LETVVVASSAEVAELILKT 102 (352)
Q Consensus 52 i~G~l~~~~~~----~~~~~~~~~~kYG~i~~i~~g-------~~~~vvv~~~~~i~eil~~ 102 (352)
++||++.-... ....+.++..+||+|..+++- +.-+|-..+++.++.++..
T Consensus 5 ~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~ 66 (81)
T 2krb_A 5 VVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKN 66 (81)
T ss_dssp EEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTT
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHH
Confidence 56777542211 235678888999999988864 2335667899999988864
No 81
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=78.35 E-value=9.8 Score=27.42 Aligned_cols=58 Identities=24% Similarity=0.245 Sum_probs=41.4
Q ss_pred CCCCCCCCCcccccccCCCCCcHHHHHHHhhcCCeeEEee---c---CeeEEEeCCHHHHHHHHhh
Q 048567 43 PPPGPKPWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKF---G---LETVVVASSAEVAELILKT 102 (352)
Q Consensus 43 ~~PGp~~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~---g---~~~~vvv~~~~~i~eil~~ 102 (352)
.||.|...-++||+..- -....+.++..+||+|..+++ + +.-+|-..+++.+..++..
T Consensus 3 ~~~~~~~~l~V~nlp~~--~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~ 66 (115)
T 3lqv_A 3 LPPEVNRILYIRNLPYK--ITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDH 66 (115)
T ss_dssp CCTTCCSEEEEESCCTT--CCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHH
Confidence 45666666788998642 234557888899999998887 2 2346668899998888763
No 82
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=75.96 E-value=6.1 Score=25.89 Aligned_cols=56 Identities=11% Similarity=0.234 Sum_probs=36.7
Q ss_pred cccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhhCCcccCC
Q 048567 52 LIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKTHDLTFAS 109 (352)
Q Consensus 52 i~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~~~~~f~~ 109 (352)
++||++. .-....+.++..+||+|..+++-. .-+|-..+++.++.++..++..+.+
T Consensus 3 ~v~nLp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g 67 (75)
T 1iqt_A 3 FVGGLSP--DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGL 67 (75)
T ss_dssp EESCCCS--SCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTT
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECC
Confidence 3556543 123455788889999998887621 2356678999999998765444433
No 83
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=71.41 E-value=11 Score=27.40 Aligned_cols=58 Identities=21% Similarity=0.239 Sum_probs=39.6
Q ss_pred CcccccccCCCCCcHHHHHHHhhcCCeeEEeecC-------eeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 51 PLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL-------ETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 51 pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~-------~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
-++|||..- --...+.++..+||+|..+++-. .=+|-..+++.++.++.. ++..+.+|
T Consensus 8 lfV~nLp~~--~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~ 73 (115)
T 4f25_A 8 IFIKNLDKS--IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 73 (115)
T ss_dssp EEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred EEECCCCCC--CCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 478888642 23456788899999998887521 236678899999998865 44444433
No 84
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=70.53 E-value=9 Score=27.04 Aligned_cols=57 Identities=23% Similarity=0.190 Sum_probs=38.0
Q ss_pred CcccccccCCCCCcHHHHHHHhhcCCeeEEeec------Ce---eEEEeCCHHHHHHHHhh-CCcccCC
Q 048567 51 PLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG------LE---TVVVASSAEVAELILKT-HDLTFAS 109 (352)
Q Consensus 51 pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g------~~---~~vvv~~~~~i~eil~~-~~~~f~~ 109 (352)
-++|||+.- --...+.++..+||+|..+++- .. =+|-..+++.++.++.. ++..+.+
T Consensus 22 lfV~nLp~~--~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 88 (99)
T 4fxv_A 22 LIVNYLPQN--MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS 88 (99)
T ss_dssp EEEESCCTT--CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC
Confidence 467887642 2345678888999999888762 11 24667899999888864 4434433
No 85
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=70.30 E-value=11 Score=24.50 Aligned_cols=56 Identities=13% Similarity=0.216 Sum_probs=36.3
Q ss_pred cccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhhCCcccCC
Q 048567 52 LIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKTHDLTFAS 109 (352)
Q Consensus 52 i~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~~~~~f~~ 109 (352)
++||++. .-....+.++..+||+|..+++-. .-+|-..+++.++.++.-++..+.+
T Consensus 3 ~v~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g 67 (75)
T 2mss_A 3 FVGGLSV--NTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINN 67 (75)
T ss_dssp EEECCCS--SCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSS
T ss_pred EEecCCC--CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECC
Confidence 3566643 123455778889999998887632 2345578999999888644444443
No 86
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=69.12 E-value=20 Score=25.74 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=40.2
Q ss_pred CcccccccCCCCCcHHHHHHHhhcCCeeEEeec---CeeEEEeCCHHHHHHHHhh-CCcccCCCc
Q 048567 51 PLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG---LETVVVASSAEVAELILKT-HDLTFASRP 111 (352)
Q Consensus 51 pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g---~~~~vvv~~~~~i~eil~~-~~~~f~~r~ 111 (352)
-++||+.. .-....+.++..+||+|..+++- +.-+|-..+++.++.++.. ++..+.+|+
T Consensus 13 l~V~nLp~--~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 75 (111)
T 1whx_A 13 ILAKNLPA--GTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVP 75 (111)
T ss_dssp EEEESCCT--TCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred EEEeCCCC--CCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeE
Confidence 35677753 22345678889999999988863 2345667899999888864 444555554
No 87
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=66.03 E-value=24 Score=24.75 Aligned_cols=60 Identities=13% Similarity=0.182 Sum_probs=41.4
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecCe----------eEEEeCCHHHHHHHHhh--CCcccCCCc
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGLE----------TVVVASSAEVAELILKT--HDLTFASRP 111 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~~----------~~vvv~~~~~i~eil~~--~~~~f~~r~ 111 (352)
--++||+..- -....+.++..+||+|..+++-.. -+|-..+++.+..++.. ++..+.+++
T Consensus 17 ~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 17 KILVRNIPFQ--ANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp CEEEESCCTT--CCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred EEEEeCCCCc--CCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 4577888642 234557888899999998887432 25567899999988875 454555543
No 88
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=65.18 E-value=11 Score=25.49 Aligned_cols=54 Identities=15% Similarity=0.252 Sum_probs=37.1
Q ss_pred CCCcccccccCCCCCcHHHHHHHhhcCCeeEEeec------C---eeEEEeCCHHHHHHHHhhCC
Q 048567 49 PWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG------L---ETVVVASSAEVAELILKTHD 104 (352)
Q Consensus 49 ~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g------~---~~~vvv~~~~~i~eil~~~~ 104 (352)
.--++||+.. .-....+.++..+||+|..+++- . .-+|-..+++.++.++...+
T Consensus 12 ~~l~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~ 74 (87)
T 3s7r_A 12 GKMFVGGLSW--DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKE 74 (87)
T ss_dssp TEEEEECCCT--TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSC
T ss_pred CEEEEeCCCC--CCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCC
Confidence 3457788864 22345678888999999888752 1 23455779999998886544
No 89
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.31 E-value=27 Score=24.14 Aligned_cols=60 Identities=8% Similarity=0.118 Sum_probs=41.0
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhhCCcccCCCc
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKTHDLTFASRP 111 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~~~~~f~~r~ 111 (352)
--++||+..- -....+.++..+||+|..+++-. .-+|-..+++.++.++.-++..+.+++
T Consensus 12 ~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~ 80 (99)
T 2dgs_A 12 KIFVGGIPHN--CGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKK 80 (99)
T ss_dssp EEEEESCCSS--CCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCB
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeE
Confidence 4567887642 23455788889999998888631 235667899999999875555555443
No 90
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.58 E-value=25 Score=24.57 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=40.9
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhh-CCcccCCCc
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKT-HDLTFASRP 111 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~-~~~~f~~r~ 111 (352)
--++||+..- -....+.++..+||+|..+++-. .-+|-..+++.++.++.. ++..+.+++
T Consensus 17 ~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (105)
T 1x5u_A 17 TVYVGGLDEK--VSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKP 86 (105)
T ss_dssp EEEEECCCTT--CCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCB
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 4467887542 23456788899999999888632 235668899999999875 444444443
No 91
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=63.41 E-value=32 Score=24.77 Aligned_cols=60 Identities=13% Similarity=0.050 Sum_probs=41.8
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeec--CeeEEEeCCHHHHHHHHhh-CCcccCCCc
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG--LETVVVASSAEVAELILKT-HDLTFASRP 111 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g--~~~~vvv~~~~~i~eil~~-~~~~f~~r~ 111 (352)
--++|||..- --...+.++..+||+|..+++- +.-+|...+++.++.++.. ++..+.++.
T Consensus 18 ~l~V~nLp~~--~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 18 RVVVSGLPPS--GSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp CEEEEECCSS--CCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 3478888642 2345577888999999888863 3456677899999988874 444555544
No 92
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=62.22 E-value=25 Score=24.78 Aligned_cols=61 Identities=15% Similarity=0.133 Sum_probs=41.4
Q ss_pred CCcccccccCCCC----CcHHHHHHHhhcCCeeEEeec-------CeeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 50 WPLIGNLNLIGQL----PHVSLHSLSQKYGPIIQLKFG-------LETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 50 ~pi~G~l~~~~~~----~~~~~~~~~~kYG~i~~i~~g-------~~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
.-++||++.-... ....+.++..+||+|..+++- +.-+|-..+++.++.++.. ++..+.+|
T Consensus 17 ~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 17 VIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp EEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred EEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 4578998753211 346688889999999988864 3345667888888888875 44444443
No 93
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=61.21 E-value=32 Score=24.06 Aligned_cols=58 Identities=12% Similarity=0.190 Sum_probs=38.7
Q ss_pred CcccccccCCCCCcHHHHHHHhhcCCeeEEeec---------CeeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 51 PLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG---------LETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 51 pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g---------~~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
-++||+.. .-....+.++..+||+|..+++- +.-+|-..+++.+..++.. ++..+.++
T Consensus 26 l~V~nlp~--~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 93 (106)
T 1p27_B 26 LFVTGVHE--EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 93 (106)
T ss_dssp EEEECCCT--TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred EEEeCCCC--CCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCc
Confidence 46787754 22345578888999999888862 1234557899999988874 44444443
No 94
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=60.61 E-value=33 Score=24.97 Aligned_cols=60 Identities=13% Similarity=0.192 Sum_probs=41.3
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeec---------CeeEEEeCCHHHHHHHHhh-CCcccCCCc
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG---------LETVVVASSAEVAELILKT-HDLTFASRP 111 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g---------~~~~vvv~~~~~i~eil~~-~~~~f~~r~ 111 (352)
.-++|||..- -....+.++..+||+|..+++- +.-+|-..+++.++.++.. ++..+.++.
T Consensus 24 ~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 93 (126)
T 3ex7_B 24 ILFVTGVHEE--ATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 93 (126)
T ss_dssp EEEEESCCTT--CCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 3567887542 2345678888999999988862 2335668899999998864 555555554
No 95
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=60.39 E-value=13 Score=27.67 Aligned_cols=62 Identities=21% Similarity=0.290 Sum_probs=40.0
Q ss_pred CCcccccccC-CC-CCcHHHHHHHhhcCCeeEEeec------CeeEEEeCCHHHHHHHHhh-CCcccCCCc
Q 048567 50 WPLIGNLNLI-GQ-LPHVSLHSLSQKYGPIIQLKFG------LETVVVASSAEVAELILKT-HDLTFASRP 111 (352)
Q Consensus 50 ~pi~G~l~~~-~~-~~~~~~~~~~~kYG~i~~i~~g------~~~~vvv~~~~~i~eil~~-~~~~f~~r~ 111 (352)
--++|||..- .. .+...+.++..+||+|..+.+. +.-+|...+++.+..++.. ++..+.+|+
T Consensus 31 ~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 31 VVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 3477888642 11 1223456788999999888762 2346777899999888865 444455554
No 96
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.95 E-value=39 Score=22.93 Aligned_cols=61 Identities=20% Similarity=0.313 Sum_probs=41.1
Q ss_pred CCCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhh-CCcccCCCc
Q 048567 49 PWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKT-HDLTFASRP 111 (352)
Q Consensus 49 ~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~-~~~~f~~r~ 111 (352)
.--++||+.. .-....+.++..+||+|..+++-. .=+|-..+++.++.++.. ++..+.+++
T Consensus 6 ~~l~v~nlp~--~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (95)
T 2dnz_A 6 SGLYVGSLHF--NITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRP 76 (95)
T ss_dssp CEEEEESCCT--TCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred cEEEEeCCCC--CCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 3456788754 223455788889999998888632 235667899999998874 444455544
No 97
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=58.85 E-value=23 Score=23.36 Aligned_cols=55 Identities=13% Similarity=0.204 Sum_probs=35.9
Q ss_pred cccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhh-CCcccC
Q 048567 52 LIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKT-HDLTFA 108 (352)
Q Consensus 52 i~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~-~~~~f~ 108 (352)
++||+.. .-....+.++..+||+|..+++-. .-+|-..+++.++.++.. ++..+.
T Consensus 5 ~V~nlp~--~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 69 (83)
T 3md1_A 5 FVGDLNV--NVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN 69 (83)
T ss_dssp EEECCCT--TCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC
Confidence 4566643 123455778889999998877531 235668899999988874 443343
No 98
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=58.64 E-value=20 Score=24.19 Aligned_cols=56 Identities=14% Similarity=0.149 Sum_probs=35.8
Q ss_pred cccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhhCCcccCC
Q 048567 52 LIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKTHDLTFAS 109 (352)
Q Consensus 52 i~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~~~~~f~~ 109 (352)
++||+.. .-....+.++..+||+|..+++-. .-+|-..+++.++.++.-++..+.+
T Consensus 10 ~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g 74 (89)
T 3ucg_A 10 YVGNVDY--GATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRG 74 (89)
T ss_dssp EEESCCT--TCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETT
T ss_pred EEeCCCC--CCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECC
Confidence 4566643 123455788889999998877532 2355577899998888434444433
No 99
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=58.62 E-value=37 Score=22.46 Aligned_cols=54 Identities=22% Similarity=0.209 Sum_probs=37.1
Q ss_pred CCCCCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhh
Q 048567 47 PKPWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKT 102 (352)
Q Consensus 47 p~~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~ 102 (352)
|...-++||+..- -....+.++..+||+|..+++-. .=+|-..+++.++.++..
T Consensus 6 ~~~~l~V~nl~~~--~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 68 (85)
T 3mdf_A 6 TKRVLYVGGLAEE--VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 68 (85)
T ss_dssp CSSEEEEECCCTT--CCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEECCCCC--CCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHH
Confidence 3345577887642 23456788889999999888621 235667899999988854
No 100
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.79 E-value=24 Score=23.99 Aligned_cols=59 Identities=20% Similarity=0.275 Sum_probs=39.8
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC-eeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL-ETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~-~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
--++||+..- -....+.++..+||+|..+++-. .-+|-..+++.+..++.. ++..+.++
T Consensus 12 ~l~V~nLp~~--~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~ 72 (92)
T 2dgt_A 12 KLHVGNISPT--CTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGK 72 (92)
T ss_dssp EEEEESCCSS--CCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEETTE
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 4567888642 23456788899999998888653 334557799999988864 44444433
No 101
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.74 E-value=24 Score=24.38 Aligned_cols=49 Identities=16% Similarity=0.108 Sum_probs=35.7
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---eeEEEeCCHHHHHHHHhh
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---ETVVVASSAEVAELILKT 102 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---~~~vvv~~~~~i~eil~~ 102 (352)
--++||+ . --...+.++..+||+|..++++. .-+|-..+++.+..++..
T Consensus 17 ~l~V~n~-~---~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~ 68 (97)
T 1x5p_A 17 TLYVYGE-D---MTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE 68 (97)
T ss_dssp EEEEECS-S---CCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred EEEEcCC-C---CCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHH
Confidence 3467884 2 23456788899999999988752 345667899999988865
No 102
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.63 E-value=41 Score=22.67 Aligned_cols=62 Identities=15% Similarity=0.122 Sum_probs=41.6
Q ss_pred CCCCCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC-eeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 47 PKPWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL-ETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 47 p~~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~-~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
+..--++||+..- -....+.++..+||+|..+++-. .-+|-..+++.++.++.. ++..+.++
T Consensus 8 ~~~~l~V~nlp~~--~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~ 71 (90)
T 2dnp_A 8 NTWKIFVGNVSAA--CTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGK 71 (90)
T ss_dssp CSCCEEEESCCTT--CCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCCC--CCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 3445578888642 23456788889999999888643 345557899999988874 44344433
No 103
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=57.43 E-value=33 Score=22.89 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=37.1
Q ss_pred cccccccCCCCCcHHHHHHHhhcCCeeEEeec----------CeeEEEeCCHHHHHHHHhh-CCcccCC
Q 048567 52 LIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG----------LETVVVASSAEVAELILKT-HDLTFAS 109 (352)
Q Consensus 52 i~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g----------~~~~vvv~~~~~i~eil~~-~~~~f~~ 109 (352)
++||+.. .-....+.++..+||+|..+++- +.-+|-..+++.++.++.. ++..+.+
T Consensus 8 ~V~nlp~--~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (88)
T 4a8x_A 8 HIGRLTR--NVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG 74 (88)
T ss_dssp EEECCCT--TCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred EEeCCCC--CCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC
Confidence 5677653 12345677888999999888761 1235667899999998874 4444433
No 104
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=57.43 E-value=24 Score=24.10 Aligned_cols=51 Identities=14% Similarity=0.214 Sum_probs=35.8
Q ss_pred CCCCCcccccccCCCCCcHHHHHHHhhcCCeeEEeec----CeeEEEeCCHHHHHHH
Q 048567 47 PKPWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG----LETVVVASSAEVAELI 99 (352)
Q Consensus 47 p~~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g----~~~~vvv~~~~~i~ei 99 (352)
|+..-++|||.. .--...+.++..+||+|..+++- +.-+|-..+++.++.+
T Consensus 10 ~~~~l~V~~Lp~--~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 10 HGSKVFVGRCTE--DMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp -CCEEEEESCCT--TCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHH
T ss_pred CCCEEEEeCCCC--CCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHH
Confidence 444567888864 22345678888999999998864 3456777899988853
No 105
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=57.19 E-value=44 Score=22.91 Aligned_cols=61 Identities=16% Similarity=0.210 Sum_probs=41.2
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeec-CeeEEEeCCHHHHHHHHhh-CCcccCCCc
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG-LETVVVASSAEVAELILKT-HDLTFASRP 111 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g-~~~~vvv~~~~~i~eil~~-~~~~f~~r~ 111 (352)
--++||+..- .-....+.++..+||+|..+++. +.-+|-..+++.+..++.. ++..+.+++
T Consensus 12 ~l~V~nlp~~-~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 74 (96)
T 2kvi_A 12 RLFIGNLPLK-NVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGKK 74 (96)
T ss_dssp EEEEESSTTS-CCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTTT
T ss_pred EEEEeCCCcc-cCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 3467888630 11245578888999999888863 3446668899999999875 444454443
No 106
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=56.97 E-value=20 Score=25.59 Aligned_cols=67 Identities=16% Similarity=0.077 Sum_probs=42.0
Q ss_pred CCCCCCCcccccccC---CCCCcHHHHHHHhhcCCeeEEeecC----------eeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 45 PGPKPWPLIGNLNLI---GQLPHVSLHSLSQKYGPIIQLKFGL----------ETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 45 PGp~~~pi~G~l~~~---~~~~~~~~~~~~~kYG~i~~i~~g~----------~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
|.|...-+++|+..- ......-+.+...+||+|..+++-. .-+|-..+++.+..+... ++..|.+|
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 445566677888642 2234556777788999998887521 224556788888877764 44455554
Q ss_pred c
Q 048567 111 P 111 (352)
Q Consensus 111 ~ 111 (352)
+
T Consensus 85 ~ 85 (105)
T 2pe8_A 85 V 85 (105)
T ss_dssp E
T ss_pred E
Confidence 3
No 107
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=56.90 E-value=32 Score=23.70 Aligned_cols=59 Identities=22% Similarity=0.285 Sum_probs=39.0
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
--++||+..- -....+.++..+||+|..+++-. .-+|-..+++.++.++.. ++..+.++
T Consensus 10 ~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (99)
T 1whw_A 10 RLFVRNLSYT--SSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGR 78 (99)
T ss_dssp EEEEECCCTT--CCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSC
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 4467777542 23456788889999999888732 235667899999998854 33334333
No 108
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=56.84 E-value=23 Score=25.26 Aligned_cols=53 Identities=15% Similarity=0.118 Sum_probs=37.7
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhhCC
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKTHD 104 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~~~ 104 (352)
--++||+.. .--...+.++..+||+|..+++-. .-+|-..+++.++.++...+
T Consensus 27 ~lfV~nLp~--~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~ 88 (109)
T 2rs2_A 27 KMFIGGLSW--QTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 88 (109)
T ss_dssp CEEEESCCT--TCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC
T ss_pred EEEEeCCCC--CCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC
Confidence 457788753 223455788889999998888632 23666889999999987654
No 109
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=56.67 E-value=18 Score=23.60 Aligned_cols=56 Identities=16% Similarity=0.158 Sum_probs=34.6
Q ss_pred cccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhhCCcccCC
Q 048567 52 LIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKTHDLTFAS 109 (352)
Q Consensus 52 i~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~~~~~f~~ 109 (352)
++||++. .-....+.++..+||+|..+++-. .-+|-..+++.+..++......+.+
T Consensus 4 ~v~nlp~--~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g 68 (77)
T 1uaw_A 4 FIGGLSW--QTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDS 68 (77)
T ss_dssp EEESCCS--SCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSS
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCC
Confidence 4566653 123455778889999988777522 1234456888888888754433333
No 110
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.67 E-value=30 Score=24.31 Aligned_cols=60 Identities=18% Similarity=0.150 Sum_probs=41.3
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeE-Eeec--------CeeEEEeCCHHHHHHHHhhCCcccCCCc
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQ-LKFG--------LETVVVASSAEVAELILKTHDLTFASRP 111 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~-i~~g--------~~~~vvv~~~~~i~eil~~~~~~f~~r~ 111 (352)
.-++|||..- --...+.++..+||+|.. +++. +.-+|-..+++.++.++..++..+.+|.
T Consensus 17 ~l~V~nLp~~--~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~ 85 (104)
T 1wg5_A 17 FVRLRGLPFG--CSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 85 (104)
T ss_dssp EEEEESCCTT--CCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSC
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcE
Confidence 4477887642 234567888899998765 5541 2346778899999999988655555553
No 111
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=56.63 E-value=33 Score=24.26 Aligned_cols=51 Identities=12% Similarity=0.006 Sum_probs=37.8
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeec--CeeEEEeCCHHHHHHHHhh
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG--LETVVVASSAEVAELILKT 102 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g--~~~~vvv~~~~~i~eil~~ 102 (352)
--++|||.. .--...+.++..+||+|..+++- +.-+|-..+++.++.++..
T Consensus 17 ~l~V~nLp~--~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~ 69 (108)
T 1x4c_A 17 RVVVSGLPP--SGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRK 69 (108)
T ss_dssp EEEEESCCS--SCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCC--CCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHH
Confidence 347788864 22356678899999999888863 3556777899999988875
No 112
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=55.68 E-value=29 Score=24.23 Aligned_cols=59 Identities=10% Similarity=0.068 Sum_probs=40.3
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC-eeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL-ETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~-~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
--++||+..- -....+.++..+||+|..+++-. .-+|-..+++.++.++.. ++..+.++
T Consensus 13 ~l~V~nl~~~--~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~ 73 (103)
T 2dgu_A 13 VLFVRNLANT--VTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGE 73 (103)
T ss_dssp CEEEECCCTT--CCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccCCC
Confidence 4577888642 23456788889999999888643 345557899999998874 44444433
No 113
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=55.06 E-value=26 Score=24.36 Aligned_cols=58 Identities=17% Similarity=0.144 Sum_probs=38.1
Q ss_pred cccccccCCCCCcHHHHHHHhhcCCeeEEeec----CeeEEEeCCHHHHHHHHhh-CCcccCCCc
Q 048567 52 LIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG----LETVVVASSAEVAELILKT-HDLTFASRP 111 (352)
Q Consensus 52 i~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g----~~~~vvv~~~~~i~eil~~-~~~~f~~r~ 111 (352)
++||+.. .-....+.++..+||+|..+++- +.-+|-..+++.+..++.. ++..+.++.
T Consensus 4 ~V~nLp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 66 (101)
T 2hvz_A 4 YVGNLGT--GAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSR 66 (101)
T ss_dssp EEECCCS--SCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCC
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcE
Confidence 4566643 12345678888999999888863 2335667899999988874 333454444
No 114
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=54.64 E-value=33 Score=24.70 Aligned_cols=60 Identities=18% Similarity=0.173 Sum_probs=40.8
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC--------eeEEEeCCHHHHHHHHhh-CCcccCCCc
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL--------ETVVVASSAEVAELILKT-HDLTFASRP 111 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~--------~~~vvv~~~~~i~eil~~-~~~~f~~r~ 111 (352)
--++||+.. .-....+.++..+||+|..+++-. .-+|-..+++.++.++.. ++..+.+++
T Consensus 9 ~l~V~nLp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 77 (116)
T 2fy1_A 9 KLFIGGLNR--ETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKA 77 (116)
T ss_dssp EEEEECCTT--TCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSB
T ss_pred EEEEeCCCC--CCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 446788754 223456788889999998887632 335667899999998874 444555554
No 115
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=54.15 E-value=13 Score=25.86 Aligned_cols=61 Identities=15% Similarity=0.165 Sum_probs=38.5
Q ss_pred CCcccccccC-C-CCCcHHHHHHHhhcCCeeEEeec------CeeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 50 WPLIGNLNLI-G-QLPHVSLHSLSQKYGPIIQLKFG------LETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 50 ~pi~G~l~~~-~-~~~~~~~~~~~~kYG~i~~i~~g------~~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
--++||+..- . ..+...+.++..+||+|..+++- +.-+|-..+++.++.++.. ++..+.+|
T Consensus 11 ~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr 80 (96)
T 2dgx_A 11 DVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSK 80 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred EEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 3477888642 1 11222344889999999988874 2235667899999888874 33334433
No 116
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=54.09 E-value=44 Score=23.17 Aligned_cols=59 Identities=14% Similarity=0.166 Sum_probs=39.8
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeec-------CeeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG-------LETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g-------~~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
--++|||..- -....+.++..+||+|..+++- +.-+|-..+++.++.++.. ++..+.++
T Consensus 17 ~l~V~nlp~~--~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cq3_A 17 RLHVSNIPFR--FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGR 83 (103)
T ss_dssp EEEEESCCTT--CCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 4577888542 2345578888999999888863 2335667899999998874 44344443
No 117
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=53.93 E-value=57 Score=23.24 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=37.1
Q ss_pred CCCcccccccCCCCCcHHHHHHHhhcCCeeEEee------cC---eeEEEeCCHHHHHHHHhh
Q 048567 49 PWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKF------GL---ETVVVASSAEVAELILKT 102 (352)
Q Consensus 49 ~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~------g~---~~~vvv~~~~~i~eil~~ 102 (352)
.--++|||.. .-....+.++..+||+|..+++ |. .-+|...+++.++.++..
T Consensus 7 ~~lfV~nL~~--~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~ 67 (110)
T 3s8s_A 7 KEVTFARLND--NVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKN 67 (110)
T ss_dssp CEEEEESCCT--TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred cEEEEECCCC--CCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 3457788864 2234567888999999988876 21 236778899999998864
No 118
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=53.64 E-value=36 Score=23.11 Aligned_cols=56 Identities=21% Similarity=0.221 Sum_probs=38.1
Q ss_pred CCCCCCCcccccccCCCCCcHHHHHHHhhcCCeeEEeec------C---eeEEEeCCHHHHHHHHhh
Q 048567 45 PGPKPWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG------L---ETVVVASSAEVAELILKT 102 (352)
Q Consensus 45 PGp~~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g------~---~~~vvv~~~~~i~eil~~ 102 (352)
|.|...-++||+..- -....+.++..+||+|..+++- . .-+|-..+++.++.++..
T Consensus 12 ~~~~~~l~v~nlp~~--~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLY--TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 76 (95)
T ss_dssp CCGGGCEEEESCCSS--CCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCC--CCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 334445577888642 2345678888999999888762 1 224557899999988874
No 119
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=53.29 E-value=40 Score=23.40 Aligned_cols=52 Identities=23% Similarity=0.342 Sum_probs=35.0
Q ss_pred CCCCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---eeEEEeCCHHHHHHHHh
Q 048567 48 KPWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---ETVVVASSAEVAELILK 101 (352)
Q Consensus 48 ~~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---~~~vvv~~~~~i~eil~ 101 (352)
..|-++||+.. +--...+.++..+||||..+++.. .-+|-..+++.+..+..
T Consensus 7 ~~wL~VgNL~~--~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~ 61 (89)
T 2wbr_A 7 SSWLLLKNLTA--QIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQM 61 (89)
T ss_dssp CCEEEEECCCT--TCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred cceEEEeCCCc--cCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHH
Confidence 34667899854 223467889999999999988642 23455667766665554
No 120
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=53.15 E-value=33 Score=26.56 Aligned_cols=57 Identities=9% Similarity=0.088 Sum_probs=38.7
Q ss_pred CcccccccCCCCCcHHHHHHHhhcCCeeEEeec---------CeeEEEeCCHHHHHHHHhh-CCcccCC
Q 048567 51 PLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG---------LETVVVASSAEVAELILKT-HDLTFAS 109 (352)
Q Consensus 51 pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g---------~~~~vvv~~~~~i~eil~~-~~~~f~~ 109 (352)
-++|||+. .-....+.++..+||+|..+++- +.-+|-..+++.++.++.. ++..+.+
T Consensus 75 l~V~nLp~--~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 141 (165)
T 1rk8_A 75 LFVTSIHE--EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG 141 (165)
T ss_dssp EEEESCCT--TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred EEEeCCCC--CCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 56788764 22355678889999999888763 2335667899999988864 4434443
No 121
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=52.92 E-value=16 Score=26.11 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=39.5
Q ss_pred CCcccccccCCCCCcHHHH---HHHhhcCCeeEEeecC------------eeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 50 WPLIGNLNLIGQLPHVSLH---SLSQKYGPIIQLKFGL------------ETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~---~~~~kYG~i~~i~~g~------------~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
--++|||..- -....+. ++..+||+|..+++-. .-+|-..+++.++.++.. ++..+.+|
T Consensus 17 ~l~V~nLp~~--~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 17 LVFVVGLSQR--LADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CEEEEEECTT--TCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred EEEEECCCCC--CCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 4578888642 1233455 7889999998887631 335567899999999886 55555444
No 122
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=52.83 E-value=23 Score=25.37 Aligned_cols=59 Identities=12% Similarity=0.124 Sum_probs=39.1
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
--++|||..- -....+.++..+||+|..+++-. .-+|-..+++.++.++.. ++..+.+|
T Consensus 27 ~l~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 95 (115)
T 2cpz_A 27 NLFIYHLPQE--FGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMK 95 (115)
T ss_dssp CEEEESCCSS--CCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 4577888642 23456788889999998877532 235557899999988865 44344433
No 123
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.83 E-value=41 Score=23.71 Aligned_cols=58 Identities=16% Similarity=0.148 Sum_probs=39.1
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeec---CeeEEEeCCHHHHHHHHhh-CCcccCC
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG---LETVVVASSAEVAELILKT-HDLTFAS 109 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g---~~~~vvv~~~~~i~eil~~-~~~~f~~ 109 (352)
--++||+.. .--...+.++..+||+|..+++- +.-+|-..+++.+..++.. ++..+.+
T Consensus 27 ~l~V~nl~~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 88 (109)
T 1x4g_A 27 TVYCGGIAS--GLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 88 (109)
T ss_dssp EEEEECCSS--CCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred EEEEeCCCC--CCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 346788764 22345677888999999888863 3345667899999888854 4434433
No 124
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=52.36 E-value=43 Score=23.56 Aligned_cols=56 Identities=9% Similarity=0.087 Sum_probs=38.3
Q ss_pred CcccccccCCCCCcHHHHHHHhhcCCeeEEeec---------CeeEEEeCCHHHHHHHHhh-CCcccC
Q 048567 51 PLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG---------LETVVVASSAEVAELILKT-HDLTFA 108 (352)
Q Consensus 51 pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g---------~~~~vvv~~~~~i~eil~~-~~~~f~ 108 (352)
-++||+.. .-....+.++..+||+|..+++. +.-+|-..+++.+..++.. ++..+.
T Consensus 29 l~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 94 (110)
T 1oo0_B 29 LFVTSIHE--EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM 94 (110)
T ss_dssp EEEESCCT--TCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EEEeCCCC--CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 46788764 22345578889999999988863 2335667899999988874 433343
No 125
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.32 E-value=50 Score=22.71 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=40.0
Q ss_pred CCCcccccccCCCCCcHHHHHHHhhcCCeeEEeec--------CeeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 49 PWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG--------LETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 49 ~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g--------~~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
.--++||+..- -....+.++..+||+|..+++- +.-+|-..+++.++.++.. ++..+.++
T Consensus 18 ~~l~v~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 86 (100)
T 2do4_A 18 HKLFISGLPFS--CTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKEN 86 (100)
T ss_dssp SCEEEESCCTT--CCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSC
T ss_pred CEEEEeCCCCC--CCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 34577887642 2345578888999999888763 1235667899999998865 44344433
No 126
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=52.12 E-value=26 Score=25.47 Aligned_cols=57 Identities=11% Similarity=0.152 Sum_probs=37.1
Q ss_pred CcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhhCCcccCC
Q 048567 51 PLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKTHDLTFAS 109 (352)
Q Consensus 51 pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~~~~~f~~ 109 (352)
-++||+.. .-....+.++..+||+|..+++-. .=+|...+++.++.++.-++..+.+
T Consensus 39 l~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g 104 (124)
T 2jwn_A 39 VYVGNVDY--GSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRG 104 (124)
T ss_dssp EEEEEECT--TCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETT
T ss_pred EEEeCCCC--CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECC
Confidence 35666643 123456788889999998877621 2356688999999998334434433
No 127
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=52.00 E-value=24 Score=23.55 Aligned_cols=51 Identities=14% Similarity=0.112 Sum_probs=35.5
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhh
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKT 102 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~ 102 (352)
--++||+..- -....+.++..+||+|..+++-. .-+|-..+++.++.++..
T Consensus 8 ~l~v~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 67 (87)
T 3bs9_A 8 HVFVGDLSPE--ITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 67 (87)
T ss_dssp EEEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 3467877542 23455788889999998887622 225567899999998874
No 128
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=51.92 E-value=52 Score=22.66 Aligned_cols=62 Identities=18% Similarity=0.190 Sum_probs=40.9
Q ss_pred CCCCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhh-CCcccCCCc
Q 048567 48 KPWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKT-HDLTFASRP 111 (352)
Q Consensus 48 ~~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~-~~~~f~~r~ 111 (352)
..--++|||.. .-....+.++..+||+|..+++-. .=+|-..+++.++.++.. ++..+.+|+
T Consensus 12 ~~~l~v~nLp~--~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 1x5s_A 12 EGKLFVGGLSF--DTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQ 83 (102)
T ss_dssp CSEEEEESCCT--TCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCC
T ss_pred CCEEEEECCCC--CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 33457788754 223455788889999998888643 234557899999988854 444454443
No 129
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=51.74 E-value=33 Score=24.01 Aligned_cols=57 Identities=14% Similarity=0.157 Sum_probs=37.9
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeec--------CeeEEEeCCHHHHHHHHhh-CCcccC
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG--------LETVVVASSAEVAELILKT-HDLTFA 108 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g--------~~~~vvv~~~~~i~eil~~-~~~~f~ 108 (352)
--++||+..- -....+.++..+||+|..+++- +.-+|-..+++.++.++.. ++..+.
T Consensus 31 ~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 96 (107)
T 3ulh_A 31 KLLVSNLDFG--VSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLD 96 (107)
T ss_dssp EEEEESCCTT--CCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 4577887542 2345578888999999887753 1235557899999988874 443333
No 130
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=51.45 E-value=24 Score=25.11 Aligned_cols=50 Identities=12% Similarity=0.166 Sum_probs=34.7
Q ss_pred CcccccccCCCCCcHHHHHHHhhcCCeeEEeec-------CeeEEEeCCHHHHHHHHhh
Q 048567 51 PLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG-------LETVVVASSAEVAELILKT 102 (352)
Q Consensus 51 pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g-------~~~~vvv~~~~~i~eil~~ 102 (352)
-++||+.. .-....+.++..+||+|..+++- +.-+|-..+++.++.++..
T Consensus 32 l~V~nLp~--~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~ 88 (109)
T 2err_A 32 LHVSNIPF--RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK 88 (109)
T ss_dssp EEEESCCT--TCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHH
T ss_pred EEEECCCC--cCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHH
Confidence 46677753 22345578889999999888763 2335667788888888764
No 131
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=51.42 E-value=44 Score=23.90 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=39.6
Q ss_pred CCCCCCCcccccccCCCCCcHHHHHHHhhcCCeeEEeec---CeeEEEeCCHHHHHHHHhh
Q 048567 45 PGPKPWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG---LETVVVASSAEVAELILKT 102 (352)
Q Consensus 45 PGp~~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g---~~~~vvv~~~~~i~eil~~ 102 (352)
|.|..--++|||..- --...+.++..+||+|..+++- +.=+|-..+++.+..++..
T Consensus 13 ~~~~~~LfV~nLp~~--vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~ 71 (105)
T 1sjq_A 13 GVPSRVIHIRKLPID--VTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNY 71 (105)
T ss_dssp CCCCCEEEECSCCTT--SCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHH
Confidence 334445678888642 2345578899999999988864 3446778899988888763
No 132
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.38 E-value=22 Score=24.91 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=39.8
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhhCCcccCCC
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKTHDLTFASR 110 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~~~~~f~~r 110 (352)
--++|||..- -....+.++..+||+|..+++-. .-+|-..+++.++.++..+...+.++
T Consensus 18 ~l~V~nlp~~--~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~ 85 (105)
T 2dh8_A 18 KLFVGGLDWS--TTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGR 85 (105)
T ss_dssp EECCBSCCTT--CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTE
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCE
Confidence 4567887542 23456788889999998877532 23456789999999988754444443
No 133
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=51.37 E-value=70 Score=23.51 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=40.3
Q ss_pred CCCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 49 PWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 49 ~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
..-++|||..- -....+.++..+||+|..+++-. .-+|-..+++.++.++.. ++..+.++
T Consensus 47 ~~l~V~nLp~~--~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~ 116 (129)
T 2kxn_B 47 CCLGVFGLSLY--TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 116 (129)
T ss_dssp SCBCEETCTTS--CCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 35577887542 23456788889999999888631 235667899999998874 44344433
No 134
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=50.83 E-value=35 Score=24.23 Aligned_cols=57 Identities=21% Similarity=0.273 Sum_probs=38.3
Q ss_pred CcccccccCCCCCcHHHHHHHhhcCCeeEEeec-CeeEEEeCCHHHHHHHHhh-CCcccCC
Q 048567 51 PLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG-LETVVVASSAEVAELILKT-HDLTFAS 109 (352)
Q Consensus 51 pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g-~~~~vvv~~~~~i~eil~~-~~~~f~~ 109 (352)
-++||+..- --...+.++..+||+|..+++. +.-+|-..+++.+..++.. ++..+.+
T Consensus 34 l~V~nLp~~--~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (108)
T 2jvo_A 34 LFVRPFPLD--VQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFAN 92 (108)
T ss_dssp EEECSSCTT--CCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred EEEECCCCC--CCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 356777531 2245578888999999888763 4446667899999988864 4434433
No 135
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=50.79 E-value=69 Score=24.05 Aligned_cols=60 Identities=17% Similarity=0.078 Sum_probs=40.9
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeec----CeeEEEeCCHHHHHHHHhh-CCcccCCCc
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG----LETVVVASSAEVAELILKT-HDLTFASRP 111 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g----~~~~vvv~~~~~i~eil~~-~~~~f~~r~ 111 (352)
--++||+..- --...+.++..+||+|..+++. +.-+|-..+++.+..++.. ++..+.+|+
T Consensus 75 ~l~V~nl~~~--~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 139 (150)
T 2i2y_A 75 KVYVGNLGNN--GNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCR 139 (150)
T ss_dssp EEEEESCCSC--CSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSC
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 4577888642 2345578888999999988863 2345667899999988874 444444443
No 136
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.72 E-value=40 Score=23.41 Aligned_cols=50 Identities=22% Similarity=0.117 Sum_probs=35.9
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC-------eeEEEeCCHHHHHHHHh
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL-------ETVVVASSAEVAELILK 101 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~-------~~~vvv~~~~~i~eil~ 101 (352)
--++||+..- --...+.++..+||+|..+++-. .-+|-..+++.+..++.
T Consensus 17 ~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~ 73 (103)
T 2cqi_A 17 TLYVGNLSRD--VTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALA 73 (103)
T ss_dssp EEEEESCCTT--CCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCcc--CCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHH
Confidence 4577887642 23456788889999998887632 33566789999988886
No 137
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=50.07 E-value=55 Score=21.96 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=39.3
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeec-------CeeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG-------LETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g-------~~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
--++||+.. .-....+.++..+||+|..+++- +.-+|-..+++.++.++.. ++..+.++
T Consensus 10 ~l~V~nlp~--~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 76 (92)
T 2dgv_A 10 QIFVRNLPF--DFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGR 76 (92)
T ss_dssp EEEECSCCT--TCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTB
T ss_pred EEEEeCCCC--CCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 346788764 22345678888999999887753 1235557899999988874 44445444
No 138
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=50.02 E-value=48 Score=22.78 Aligned_cols=59 Identities=14% Similarity=0.098 Sum_probs=37.8
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeE--------EeecC---------eeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQ--------LKFGL---------ETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~--------i~~g~---------~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
.-++||+..- --...+.++..+||+|.. +++-. .-+|-..+++.++.++.. ++..+.+|
T Consensus 15 ~l~V~nLp~~--~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~ 91 (99)
T 2la6_A 15 TIFVQGLGEN--VTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 91 (99)
T ss_dssp EEEEECCCSS--CCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSS
T ss_pred EEEEeCCCCC--CCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 4477888642 234567888899999876 55421 235567899999888863 44444433
No 139
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=49.87 E-value=33 Score=23.86 Aligned_cols=59 Identities=22% Similarity=0.287 Sum_probs=38.7
Q ss_pred CCcccccccCCC----CCcHHHHHHHhhcCCeeEEeec---------CeeEEEeCCHHHHHHHHhh-CCcccC
Q 048567 50 WPLIGNLNLIGQ----LPHVSLHSLSQKYGPIIQLKFG---------LETVVVASSAEVAELILKT-HDLTFA 108 (352)
Q Consensus 50 ~pi~G~l~~~~~----~~~~~~~~~~~kYG~i~~i~~g---------~~~~vvv~~~~~i~eil~~-~~~~f~ 108 (352)
.-++||++.... .....+.++..+||+|..+++- +.-+|-..+++.++.++.. ++..+.
T Consensus 8 ~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 80 (100)
T 3ns6_A 8 YIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD 80 (100)
T ss_dssp EEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred EEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccC
Confidence 346778765311 1234577888999999988863 2335667899999988853 433343
No 140
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=49.48 E-value=19 Score=24.79 Aligned_cols=58 Identities=22% Similarity=0.316 Sum_probs=37.9
Q ss_pred CCcccccccC-CC-CCcHHHHHHHhhcCCeeEEeec------CeeEEEeCCHHHHHHHHhh-CCccc
Q 048567 50 WPLIGNLNLI-GQ-LPHVSLHSLSQKYGPIIQLKFG------LETVVVASSAEVAELILKT-HDLTF 107 (352)
Q Consensus 50 ~pi~G~l~~~-~~-~~~~~~~~~~~kYG~i~~i~~g------~~~~vvv~~~~~i~eil~~-~~~~f 107 (352)
--++||+..- .. .+...+.++..+||+|..+++- +.-+|-..+++.+..++.. ++..+
T Consensus 10 ~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 76 (97)
T 1nu4_A 10 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPF 76 (97)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4578887642 11 1223344888999999888763 3456778899999988864 43333
No 141
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=49.16 E-value=53 Score=22.43 Aligned_cols=59 Identities=24% Similarity=0.161 Sum_probs=39.4
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeec------------CeeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG------------LETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g------------~~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
--++||+..- -....+.++..+||+|..+++- +.-+|-..+++.++.++.. ++..+.++
T Consensus 7 ~l~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (98)
T 2cpf_A 7 GLFIKNLNFS--TTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGH 78 (98)
T ss_dssp CEEEESCCTT--CCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTE
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 4567887642 2345678888999999887753 1235567899999999875 44344433
No 142
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.06 E-value=63 Score=22.31 Aligned_cols=63 Identities=21% Similarity=0.112 Sum_probs=41.9
Q ss_pred CCCCCcccccccCCCCCcHHHHHHHhhcCCeeEEeec-------CeeEEEeCCHHHHHHHHhh-CCcccCCCc
Q 048567 47 PKPWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG-------LETVVVASSAEVAELILKT-HDLTFASRP 111 (352)
Q Consensus 47 p~~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g-------~~~~vvv~~~~~i~eil~~-~~~~f~~r~ 111 (352)
+..--++||+..- -....+.++..+||+|..+++- +.-+|-..+++.+..++.. ++..+.+++
T Consensus 14 ~~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2d9p_A 14 QVVNLYVKNLDDG--IDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 84 (103)
T ss_dssp SCCCEEEECCCTT--CCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCEEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 4445678888642 2245577888999999888764 1235667899999998874 444454443
No 143
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=49.02 E-value=37 Score=23.41 Aligned_cols=60 Identities=15% Similarity=0.211 Sum_probs=39.8
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---eeEEEeCCHHHHHHHHhh-CCcccCCCc
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---ETVVVASSAEVAELILKT-HDLTFASRP 111 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---~~~vvv~~~~~i~eil~~-~~~~f~~r~ 111 (352)
--++||+..- -....+.++..+||+|..+++.. .-+|-..+++.++.++.. ++..+.+++
T Consensus 17 ~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~ 80 (99)
T 2cpj_A 17 RLFVGNLPPD--ITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQ 80 (99)
T ss_dssp EEEEESCCTT--CCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBC
T ss_pred EEEEeCCCCC--CCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCce
Confidence 4467888642 23455788899999998888643 335557788888888754 444444443
No 144
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.02 E-value=26 Score=25.15 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=39.0
Q ss_pred CcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhhCCcccCCC
Q 048567 51 PLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKTHDLTFASR 110 (352)
Q Consensus 51 pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~~~~~f~~r 110 (352)
-++|||..- -....+.++..+||+|..+++-. .-+|...+++.++.++..++..+.+|
T Consensus 30 l~V~nLp~~--~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~ 96 (116)
T 1x4b_A 30 LFIGGLSFE--TTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGR 96 (116)
T ss_dssp EEEECCTTC--CCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTE
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCE
Confidence 467777532 23455788889999998877632 23566789999999987654444443
No 145
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=49.01 E-value=36 Score=24.24 Aligned_cols=59 Identities=14% Similarity=0.097 Sum_probs=39.2
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
--++|||..- -....+.++..+||+|..+++-. .-+|...+++.++.++.. ++..+.++
T Consensus 17 ~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (115)
T 2dgo_A 17 HVFVGDLSPE--ITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 85 (115)
T ss_dssp EEEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 4567887542 23455788889999998887632 235667899999999864 33334433
No 146
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.63 E-value=39 Score=24.13 Aligned_cols=58 Identities=17% Similarity=0.119 Sum_probs=39.3
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhhCCcccCC
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKTHDLTFAS 109 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~~~~~f~~ 109 (352)
--++|||..- -....+.++..+||+|..+++-. .-+|-..+++.++.++..-...+.+
T Consensus 19 ~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g 85 (116)
T 2cqd_A 19 KIFVGGLPYH--TTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDG 85 (116)
T ss_dssp EEEEECCCSS--CCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETT
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCC
Confidence 4467887542 23456788889999998888643 2356678999999998764333433
No 147
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.28 E-value=30 Score=24.66 Aligned_cols=52 Identities=10% Similarity=0.015 Sum_probs=34.8
Q ss_pred CcccccccCCCCCcHHHHHHHhhcCCeeEEeec---------CeeEEEeCCHHHHHHHHhhCC
Q 048567 51 PLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG---------LETVVVASSAEVAELILKTHD 104 (352)
Q Consensus 51 pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g---------~~~~vvv~~~~~i~eil~~~~ 104 (352)
-++||+..- -....+.++..+||+|..+++- +.-+|-..+++.++.++.-++
T Consensus 28 l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g 88 (114)
T 2cq4_A 28 VFCMQLAAR--IRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTG 88 (114)
T ss_dssp EEEESCCTT--CCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTT
T ss_pred EEEeCCCCC--CCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCC
Confidence 356777531 2345578888999999988863 123556778888888883344
No 148
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.14 E-value=38 Score=22.48 Aligned_cols=53 Identities=25% Similarity=0.137 Sum_probs=35.5
Q ss_pred CCCCCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHh
Q 048567 47 PKPWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILK 101 (352)
Q Consensus 47 p~~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~ 101 (352)
|..--++||++.- -....+.++..+||+|..+++-. .-+|-..+++.++.++.
T Consensus 4 ~~~~l~v~nlp~~--~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (85)
T 1x4e_A 4 GSSGLYIRGLQPG--TTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT 65 (85)
T ss_dssp CCCEEEEESCCTT--CCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHH
T ss_pred CCcEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 3334567887542 23455777888999998887532 23566788888888876
No 149
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=47.76 E-value=46 Score=26.04 Aligned_cols=54 Identities=13% Similarity=0.212 Sum_probs=37.3
Q ss_pred cccccccCCCCCcHHHHHHHhhcCCeeEEeec-----CeeEEEeCCHHHHHHHHhh-CCccc
Q 048567 52 LIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG-----LETVVVASSAEVAELILKT-HDLTF 107 (352)
Q Consensus 52 i~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g-----~~~~vvv~~~~~i~eil~~-~~~~f 107 (352)
++||+.. .--...+.+++.+||+|-++++. +.-+|-..+++.+..++.. ++..+
T Consensus 50 ~VgNL~~--~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i 109 (164)
T 1sjr_A 50 IVENLFY--PVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNI 109 (164)
T ss_dssp EECSCCS--CCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCS
T ss_pred EEeCcCC--CCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 5788853 22345678889999999888863 2346668899988888875 33344
No 150
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.74 E-value=46 Score=22.80 Aligned_cols=64 Identities=14% Similarity=0.107 Sum_probs=41.3
Q ss_pred CCCCCCcccccccCCCCCcHHHHHHHhhcCCee-EEeecC---------eeEEEeCCHHHHHHHHhh-CCcccCCCc
Q 048567 46 GPKPWPLIGNLNLIGQLPHVSLHSLSQKYGPII-QLKFGL---------ETVVVASSAEVAELILKT-HDLTFASRP 111 (352)
Q Consensus 46 Gp~~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~-~i~~g~---------~~~vvv~~~~~i~eil~~-~~~~f~~r~ 111 (352)
.|..--++||+..- -....+.++..+||+|. .+++-. .-+|-..+++.++.++.. ++..+.++.
T Consensus 7 ~~~~~l~V~nLp~~--~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 7 GMAASLWMGDLEPY--MDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp SSSSEEEECSCCTT--CCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred CCccEEEEeCCCCC--CCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 34445577888642 23456788889999998 877531 225557899999998874 334444443
No 151
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=47.72 E-value=42 Score=22.77 Aligned_cols=51 Identities=18% Similarity=0.174 Sum_probs=35.7
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC--------eeEEEeCCHHHHHHHHhh
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL--------ETVVVASSAEVAELILKT 102 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~--------~~~vvv~~~~~i~eil~~ 102 (352)
--++||+..- -....+.++..+||+|..+++-. .-+|-..+++.++.++..
T Consensus 18 ~l~v~nlp~~--~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (95)
T 2ywk_A 18 TVFVGNLEAR--VREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIAL 76 (95)
T ss_dssp EEEEECCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHH
T ss_pred EEEEECCCCC--CCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHH
Confidence 4467777542 23456788889999998888632 235567899999888863
No 152
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=47.59 E-value=30 Score=27.75 Aligned_cols=56 Identities=14% Similarity=0.193 Sum_probs=38.1
Q ss_pred cccccccCCCCCcHHHHHHHhhcCCeeEEeec--------CeeEEEeCCHHHHHHHHhhCCcccCC
Q 048567 52 LIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG--------LETVVVASSAEVAELILKTHDLTFAS 109 (352)
Q Consensus 52 i~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g--------~~~~vvv~~~~~i~eil~~~~~~f~~ 109 (352)
++||++. .-....+.++..+||+|..+++- |.-+|-..+++.++.++...+..+.+
T Consensus 113 ~V~nLp~--~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~G 176 (193)
T 2voo_A 113 YIKGFPT--DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKE 176 (193)
T ss_dssp EEECCCT--TCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETT
T ss_pred EecCCCC--cCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECC
Confidence 5677753 23456688899999999887753 23356678999999998654333433
No 153
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=47.22 E-value=33 Score=25.09 Aligned_cols=65 Identities=14% Similarity=0.062 Sum_probs=41.9
Q ss_pred CCCCCcccccccC---CCCCcHHHHHHHhhcCCeeEEeecC-------------eeEEEeCCHHHHHHHHhh-CCcccCC
Q 048567 47 PKPWPLIGNLNLI---GQLPHVSLHSLSQKYGPIIQLKFGL-------------ETVVVASSAEVAELILKT-HDLTFAS 109 (352)
Q Consensus 47 p~~~pi~G~l~~~---~~~~~~~~~~~~~kYG~i~~i~~g~-------------~~~vvv~~~~~i~eil~~-~~~~f~~ 109 (352)
|...-++.|+..- ......-+.+...+||+|..+++-. .-+|-..+++.+..+... ++..|.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4556677887653 2334555667778999998887531 124456788888877765 4555655
Q ss_pred Cc
Q 048567 110 RP 111 (352)
Q Consensus 110 r~ 111 (352)
|.
T Consensus 99 R~ 100 (118)
T 3ue2_A 99 RK 100 (118)
T ss_dssp EE
T ss_pred cE
Confidence 54
No 154
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=46.99 E-value=49 Score=24.11 Aligned_cols=56 Identities=16% Similarity=0.113 Sum_probs=38.3
Q ss_pred CcccccccCCCCCcHHHHHHHhhcCCeeEEeec---CeeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 51 PLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG---LETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 51 pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g---~~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
-++||+ . --...+.++..+||+|..++++ +.-+|-..+++.+..++.. ++..+.++
T Consensus 42 lfVgnl-~---~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~ 101 (121)
T 2bz2_A 42 LYVYGE-D---MTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESV 101 (121)
T ss_dssp EEEECS-S---CCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSC
T ss_pred EEEcCC-C---CCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 467773 2 2345678889999999888875 3345667899999888854 44444443
No 155
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=46.89 E-value=64 Score=22.34 Aligned_cols=52 Identities=21% Similarity=0.105 Sum_probs=36.2
Q ss_pred CCCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC--------eeEEEeCCHHHHHHHHhh
Q 048567 49 PWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL--------ETVVVASSAEVAELILKT 102 (352)
Q Consensus 49 ~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~--------~~~vvv~~~~~i~eil~~ 102 (352)
.--++|||..- -....+.++..+||+|..+++-. .-+|-..+++.++.++..
T Consensus 16 ~~l~v~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 75 (105)
T 2dnh_A 16 RKLFVGMLNKQ--QSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHA 75 (105)
T ss_dssp CEEEEESCCTT--CCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 34567888542 23455788889999998887632 234557899999988864
No 156
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=46.48 E-value=37 Score=24.46 Aligned_cols=59 Identities=14% Similarity=0.085 Sum_probs=40.5
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcC-CeeEEeec-----CeeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYG-PIIQLKFG-----LETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG-~i~~i~~g-----~~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
--++|||.. .--...+.++..+|| .|..+++- +.-+|-..+++.++.++.. ++..+.+|
T Consensus 30 ~l~VgnLp~--~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr 95 (111)
T 2jvr_A 30 RITMKNLPE--GCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGS 95 (111)
T ss_dssp EEEEECSSC--CCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred EEEEECCCC--CCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 457788864 233566888999999 78777762 3456778899999988865 33334333
No 157
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=46.42 E-value=47 Score=22.91 Aligned_cols=50 Identities=22% Similarity=0.236 Sum_probs=34.5
Q ss_pred CcccccccCCCCCcHHHHHHHhhcCCeeEEeec---CeeEEEeCCHHHHHHHHhh
Q 048567 51 PLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG---LETVVVASSAEVAELILKT 102 (352)
Q Consensus 51 pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g---~~~~vvv~~~~~i~eil~~ 102 (352)
-++||+.. .-....+.++..+||+|..+++. +.-+|-..+.+.+..++..
T Consensus 30 l~V~nlp~--~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 82 (101)
T 2la4_A 30 AYIGNIPH--FATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVA 82 (101)
T ss_dssp EEEESCCT--TCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHH
T ss_pred EEEcCCCc--ccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHH
Confidence 46777753 22345677888999999888874 2335556788888888754
No 158
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.31 E-value=68 Score=21.89 Aligned_cols=59 Identities=14% Similarity=0.223 Sum_probs=36.8
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCe-eEEeec---CeeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPI-IQLKFG---LETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i-~~i~~g---~~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
--++|||.. .--...+.++..+||+| +.+..+ +.-+|-..+++.+..++.. ++..+.+|
T Consensus 21 ~l~V~nL~~--~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 84 (97)
T 2e5j_A 21 DVYVGNLPR--DARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTD 84 (97)
T ss_dssp EEEEECCCT--TCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSS
T ss_pred EEEEeCCCC--cCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 346788753 22345678888999987 333332 3345667899988888865 44444443
No 159
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=45.84 E-value=76 Score=22.34 Aligned_cols=59 Identities=19% Similarity=0.284 Sum_probs=39.1
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeec---------CeeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG---------LETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g---------~~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
--++||+..- -....+.++..+||+|..+++- +.-+|-..+++.+..++.. ++..+.+|
T Consensus 28 ~l~V~nLp~~--~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~ 96 (108)
T 2jrs_A 28 RLYVGSLHFN--ITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 96 (108)
T ss_dssp EEEEECCCSS--CCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3467887542 2345578888999999887753 1235667899999998863 44344443
No 160
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=45.51 E-value=25 Score=25.57 Aligned_cols=68 Identities=16% Similarity=0.069 Sum_probs=42.4
Q ss_pred CCCCCCCCcccccccCCC--C------CcHHHHHHHhhcCCeeEEeec-----CeeEEEeCCHHHHHHHHhh-CCcccCC
Q 048567 44 PPGPKPWPLIGNLNLIGQ--L------PHVSLHSLSQKYGPIIQLKFG-----LETVVVASSAEVAELILKT-HDLTFAS 109 (352)
Q Consensus 44 ~PGp~~~pi~G~l~~~~~--~------~~~~~~~~~~kYG~i~~i~~g-----~~~~vvv~~~~~i~eil~~-~~~~f~~ 109 (352)
+|-|...-+|-|+..... + +..-+.+...+||.|..+++- |.-+|-..+++.+..++.. ++..|.+
T Consensus 3 ~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 3 QPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 566666677778776521 1 122345566799999988862 2335556788888877754 4445555
Q ss_pred Cc
Q 048567 110 RP 111 (352)
Q Consensus 110 r~ 111 (352)
|.
T Consensus 83 R~ 84 (114)
T 3s6e_A 83 KM 84 (114)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 161
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=45.18 E-value=66 Score=23.25 Aligned_cols=54 Identities=15% Similarity=0.128 Sum_probs=38.2
Q ss_pred CCCCCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---eeEEEeCCHHHHHHHHh
Q 048567 47 PKPWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---ETVVVASSAEVAELILK 101 (352)
Q Consensus 47 p~~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---~~~vvv~~~~~i~eil~ 101 (352)
|...-++|||..= +--...+.++..+||+|..+++.. .=+|-..+++.+..++.
T Consensus 24 p~~~l~V~NLp~~-~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 80 (112)
T 1x4f_A 24 LGRVIHLSNLPHS-GYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVD 80 (112)
T ss_dssp CCCEEEEESCCCS-SCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHH
T ss_pred CCCEEEEeCCCCc-cCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHH
Confidence 4445678888641 023455778889999999988753 34666788988888876
No 162
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.57 E-value=54 Score=22.64 Aligned_cols=51 Identities=14% Similarity=0.263 Sum_probs=34.9
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhh
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKT 102 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~ 102 (352)
--++||+.. .-....+.++..+||+|..+++-. .-+|-..+++.++.++..
T Consensus 10 ~l~V~nlp~--~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 69 (104)
T 1p1t_A 10 SVFVGNIPY--EATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69 (104)
T ss_dssp CEEEESCCT--TSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHH
T ss_pred EEEEeCCCC--cCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH
Confidence 346777753 223455788889999998877531 235557899999998864
No 163
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.45 E-value=75 Score=21.89 Aligned_cols=65 Identities=18% Similarity=0.117 Sum_probs=42.7
Q ss_pred CCCCCCCcccccccCCCCCcHHHHHHHhh-cCCeeEEeec--------CeeEEEeCCHHHHHHHHhh-CCcc-cCCCc
Q 048567 45 PGPKPWPLIGNLNLIGQLPHVSLHSLSQK-YGPIIQLKFG--------LETVVVASSAEVAELILKT-HDLT-FASRP 111 (352)
Q Consensus 45 PGp~~~pi~G~l~~~~~~~~~~~~~~~~k-YG~i~~i~~g--------~~~~vvv~~~~~i~eil~~-~~~~-f~~r~ 111 (352)
+.|..--++|||..- --...+.++..+ ||+|..+++- +.-+|-..+++.+..++.. ++.. +.+++
T Consensus 6 ~~~~~~l~V~nLp~~--~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~ 81 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPD--VDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP 81 (104)
T ss_dssp SSCCCCEEEECCCTT--CCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSC
T ss_pred CCCCcEEEEeCCCCC--CCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEe
Confidence 445556678888642 234557788888 9999888762 1235667899999999874 3333 44443
No 164
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=44.16 E-value=53 Score=24.28 Aligned_cols=58 Identities=19% Similarity=0.297 Sum_probs=38.4
Q ss_pred CcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 51 PLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 51 pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
-++||+.. .-....+.++..+||+|..+++-. .-+|-..+++.+..++.. ++..+.++
T Consensus 45 l~V~nLp~--~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 112 (139)
T 1u6f_A 45 LMVNYIPT--TVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK 112 (139)
T ss_dssp EEEESCST--TCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC
T ss_pred EEEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 35677753 123456788899999998887621 235667899999998875 44444444
No 165
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=43.91 E-value=53 Score=22.69 Aligned_cols=56 Identities=13% Similarity=0.139 Sum_probs=36.6
Q ss_pred cccccccCCCCCcHHHHHHHhhcCCeeEEeecC----------eeEEEeCCHHHHHHHHhhCCcccCCC
Q 048567 52 LIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL----------ETVVVASSAEVAELILKTHDLTFASR 110 (352)
Q Consensus 52 i~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~----------~~~vvv~~~~~i~eil~~~~~~f~~r 110 (352)
++||+..- --...+.++..+|| |..+++-. .-+|-..+.+.++.++.-++..+.+|
T Consensus 23 ~V~nLp~~--~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~ 88 (100)
T 2j76_E 23 FLGNLPYD--VTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNR 88 (100)
T ss_dssp EESCCSSC--CSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTB
T ss_pred EEeCCCCC--CCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCe
Confidence 56777532 22345778889999 98888632 23566789999999884344444443
No 166
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=43.88 E-value=72 Score=24.08 Aligned_cols=60 Identities=17% Similarity=0.151 Sum_probs=40.8
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecCe---------eEEEeCCHHHHHHHHhh-CCcccCCCc
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGLE---------TVVVASSAEVAELILKT-HDLTFASRP 111 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~~---------~~vvv~~~~~i~eil~~-~~~~f~~r~ 111 (352)
.-++|||..- -....+.++..+||+|..+++... -+|-..+++.++.++.. ++..+.+|+
T Consensus 72 ~l~v~nl~~~--~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 141 (158)
T 2kn4_A 72 SLKVDNLTYR--TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 141 (158)
T ss_dssp EEEEESCCTT--CCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSE
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 4567777532 234557788899999998886432 35668899999999875 444454443
No 167
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.39 E-value=73 Score=21.42 Aligned_cols=52 Identities=15% Similarity=0.247 Sum_probs=37.0
Q ss_pred CCCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhh
Q 048567 49 PWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKT 102 (352)
Q Consensus 49 ~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~ 102 (352)
..-++||++. .-....+.++..+||+|..+++-. .-+|-..+++.++.++..
T Consensus 17 ~~l~V~nlp~--~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 77 (94)
T 2e5h_A 17 STVYVSNLPF--SLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 77 (94)
T ss_dssp TSEEEESCCT--TSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHH
T ss_pred CEEEEECCCC--CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 3557788863 223455788889999998888632 235668899999988854
No 168
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=43.19 E-value=48 Score=24.78 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=36.0
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC-----eeEEEeCCHHHHHHHHhh
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL-----ETVVVASSAEVAELILKT 102 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~-----~~~vvv~~~~~i~eil~~ 102 (352)
.-++||+.. .--...+.+++.+||+|-++++.. .-+|...+++.++.++..
T Consensus 30 ~I~V~NL~~--~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~ 85 (130)
T 3zzy_A 30 RIIVENLFY--PVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 85 (130)
T ss_dssp EEEEESCCS--CCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHH
T ss_pred EEEECCCCC--CCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHH
Confidence 446888853 122456788999999998888642 246778888888888764
No 169
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=42.45 E-value=52 Score=23.31 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=31.1
Q ss_pred HHHHHHhhcCCeeEEeec-----------CeeEEEeCCHHHHHHHHhh-CCcccCCCc
Q 048567 66 SLHSLSQKYGPIIQLKFG-----------LETVVVASSAEVAELILKT-HDLTFASRP 111 (352)
Q Consensus 66 ~~~~~~~kYG~i~~i~~g-----------~~~~vvv~~~~~i~eil~~-~~~~f~~r~ 111 (352)
-+.+...+||+|..+++- +.=+|-..+++.++.++.. ++..|.+|+
T Consensus 31 dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~ 88 (105)
T 3v4m_A 31 DVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRV 88 (105)
T ss_dssp HHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred HHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCE
Confidence 456667799999998863 1224557789888887754 445555554
No 170
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=42.08 E-value=45 Score=23.03 Aligned_cols=62 Identities=21% Similarity=0.217 Sum_probs=40.5
Q ss_pred CCCCCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 47 PKPWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 47 p~~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
|..--++||+..- -....+.++..+||+|..+++-. .=+|-..+++.++.++.. ++..+.+|
T Consensus 11 ~~~~l~V~nLp~~--~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 2cqb_A 11 TKRVLYVGGLAEE--VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 82 (102)
T ss_dssp CCSCEEEESCCSS--CCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEeCCCCC--CCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 3445578888642 23456788889999998888622 224456799999988864 44344433
No 171
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=41.69 E-value=53 Score=25.22 Aligned_cols=55 Identities=18% Similarity=0.273 Sum_probs=36.1
Q ss_pred cccccccCCCCCcHHHHHHHhhcC--CeeEEeec-----C----eeEEEeCCHHHHHHHHhh-CCcccC
Q 048567 52 LIGNLNLIGQLPHVSLHSLSQKYG--PIIQLKFG-----L----ETVVVASSAEVAELILKT-HDLTFA 108 (352)
Q Consensus 52 i~G~l~~~~~~~~~~~~~~~~kYG--~i~~i~~g-----~----~~~vvv~~~~~i~eil~~-~~~~f~ 108 (352)
++|||.. .--...+.++..+|| +|..+++- + .-+|-..+++.+..++.. ++..+.
T Consensus 59 fVgnLp~--~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~ 125 (156)
T 3n9u_C 59 YVGSFSW--WTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN 125 (156)
T ss_dssp EEECCCT--TCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET
T ss_pred EEeCCCC--CCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4555532 122456788899999 89888862 1 236668899999999876 443333
No 172
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.59 E-value=62 Score=22.43 Aligned_cols=61 Identities=11% Similarity=0.121 Sum_probs=39.6
Q ss_pred CCCCCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC----------eeEEEeCCHHHHHHHHhhCCcccCCC
Q 048567 47 PKPWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL----------ETVVVASSAEVAELILKTHDLTFASR 110 (352)
Q Consensus 47 p~~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~----------~~~vvv~~~~~i~eil~~~~~~f~~r 110 (352)
|..--++||+..- --...+.++..+|| |..+++-. .-+|-..+++.++.++.-++..+.+|
T Consensus 14 ~~~~l~V~nlp~~--~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~ 84 (104)
T 1wi8_A 14 PPYTAFLGNLPYD--VTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNK 84 (104)
T ss_dssp SCEEEEEESCCSS--CCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTE
T ss_pred CCCEEEEeCCCCc--CCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCc
Confidence 3334577888642 23455788889999 98888621 23566789999999984344444443
No 173
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.46 E-value=30 Score=24.09 Aligned_cols=51 Identities=16% Similarity=0.106 Sum_probs=35.8
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhh
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKT 102 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~ 102 (352)
--++||+..- -....+.++..+||+|..+++-. .-+|-..+++.++.++..
T Consensus 17 ~l~V~nlp~~--~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (103)
T 2cq0_A 17 TIRVTNLSED--TRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 76 (103)
T ss_dssp EEEEESCCTT--CCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 4567887642 23455778888999998887632 225667899999998874
No 174
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=41.46 E-value=49 Score=25.10 Aligned_cols=60 Identities=20% Similarity=0.137 Sum_probs=40.8
Q ss_pred CCCcccccccCCCCCcHHHHHHHhhcCCeeEEee------cC---eeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 49 PWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKF------GL---ETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 49 ~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~------g~---~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
..-++|||.. .-....+.++..+||+|..+++ +. .-+|...+++.++.++.. ++..+.++
T Consensus 40 ~~l~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 109 (156)
T 1h2v_Z 40 CTLYVGNLSF--YTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDR 109 (156)
T ss_dssp CEEEEESCCT--TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTE
T ss_pred CEEEEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 3457788763 2234567888999999988887 21 225667899999999875 44444444
No 175
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=41.41 E-value=81 Score=21.42 Aligned_cols=58 Identities=12% Similarity=0.119 Sum_probs=39.3
Q ss_pred CCCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---eeEEEeCCHHHHHHHHhh-CCcccC
Q 048567 49 PWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---ETVVVASSAEVAELILKT-HDLTFA 108 (352)
Q Consensus 49 ~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---~~~vvv~~~~~i~eil~~-~~~~f~ 108 (352)
.--++||+..- -....+.++..+||+|..+++-. .-+|-..+++.++.++.. ++..+.
T Consensus 18 ~~l~V~nlp~~--~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (97)
T 1why_A 18 TRLWVGGLGPN--TSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLG 79 (97)
T ss_dssp SCEEEECCCSS--CCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CEEEEeCCCCC--CCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 35577888642 23456788889999999888643 335557899999888874 433343
No 176
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.27 E-value=75 Score=23.22 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=37.6
Q ss_pred CCCCCcccccccCCCCCcHHHHHHHhhcCCeeEEeec---CeeEEEeCCHHHHHHHHh
Q 048567 47 PKPWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG---LETVVVASSAEVAELILK 101 (352)
Q Consensus 47 p~~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g---~~~~vvv~~~~~i~eil~ 101 (352)
|...-++|||..- --...+.++..+||.|..+++- +.=+|-..+.+.+..++.
T Consensus 30 ps~~LfVgNLp~~--vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~ 85 (119)
T 2ad9_A 30 PSRVIHIRKLPID--VTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVN 85 (119)
T ss_dssp CCSEEEEESCCTT--CCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHH
T ss_pred CCCEEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 3345678988642 2345678899999999888864 334666778888888876
No 177
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=40.99 E-value=88 Score=24.77 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=35.5
Q ss_pred CcccccccCCCCCcHHHHHHHhhcCCeeEEeec---------CeeEEEeCCHHHHHHHHhh
Q 048567 51 PLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG---------LETVVVASSAEVAELILKT 102 (352)
Q Consensus 51 pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g---------~~~~vvv~~~~~i~eil~~ 102 (352)
-++|||..- -....+.++..+||+|..+++- +.-+|-..+++.++.++..
T Consensus 31 l~V~nLp~~--~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 89 (216)
T 2qfj_A 31 VYVGSIYYE--LGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 89 (216)
T ss_dssp EEEECCCTT--CCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHH
T ss_pred EEEECCCCC--CCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHH
Confidence 356776531 2345678889999999888862 2335668899999999873
No 178
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.97 E-value=72 Score=21.58 Aligned_cols=58 Identities=10% Similarity=0.218 Sum_probs=37.2
Q ss_pred CcccccccCCCCCcHHHHHHHhhcCCeeEEeecC----eeEEEeCCHHHHHHHHhhCCcccCCC
Q 048567 51 PLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL----ETVVVASSAEVAELILKTHDLTFASR 110 (352)
Q Consensus 51 pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~----~~~vvv~~~~~i~eil~~~~~~f~~r 110 (352)
-++||+.. .-....+.++..+||+|..+..-. .-+|-..+++.++.++.-++..+.+|
T Consensus 11 l~V~nl~~--~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~l~g~~~~g~ 72 (94)
T 2e5g_A 11 VFVSGFPR--GVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGH 72 (94)
T ss_dssp EEEECCCT--TCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHTCSCCEETTE
T ss_pred EEEECCCC--CCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHhcCCeEECCE
Confidence 36777753 223456788889999998764321 23455679999999987444444433
No 179
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=40.74 E-value=51 Score=25.78 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=39.9
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhhCCcccCC
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKTHDLTFAS 109 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~~~~~f~~ 109 (352)
--++|||+. .-....+.++..+||+|..+++-. .-+|...+++.+..++..++..+.+
T Consensus 15 ~l~V~nLp~--~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g 81 (196)
T 1l3k_A 15 KLFIGGLSF--ETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDG 81 (196)
T ss_dssp EEEEESCCT--TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETT
T ss_pred EEEEeCCCC--CCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECC
Confidence 457788864 223456788899999998877521 2356688999999999765444443
No 180
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.40 E-value=82 Score=22.04 Aligned_cols=52 Identities=12% Similarity=0.144 Sum_probs=37.4
Q ss_pred CCCCcccccccCCCCCcHHHHHHHhhcCCeeEEeec---CeeEEEeCCHHHHHHHHh
Q 048567 48 KPWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG---LETVVVASSAEVAELILK 101 (352)
Q Consensus 48 ~~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g---~~~~vvv~~~~~i~eil~ 101 (352)
...-++|||.. .--...+.++..+||.|..+++- +.=+|-..+.+.+..++.
T Consensus 15 ~~~l~V~nLp~--~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~ 69 (101)
T 2cq1_A 15 SRVLHIRKLPG--EVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVN 69 (101)
T ss_dssp CSEEEEESCCT--TCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCCC--CCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 34567888864 22345678889999999888763 234666789998888876
No 181
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.71 E-value=62 Score=22.84 Aligned_cols=59 Identities=12% Similarity=0.079 Sum_probs=39.4
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC--------eeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL--------ETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~--------~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
--++|||.. .-....+.++..+||+|..+++-. .-+|...+++.++.++.. ++..+.++
T Consensus 17 ~l~V~nlp~--~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 84 (114)
T 2do0_A 17 TVFVANLDY--KVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDR 84 (114)
T ss_dssp CEEEESCCT--TCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred EEEEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCC
Confidence 457788864 223456788899999998877532 235667899999988874 44344433
No 182
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.49 E-value=96 Score=21.72 Aligned_cols=47 Identities=28% Similarity=0.419 Sum_probs=33.9
Q ss_pred cHHHHHHHhhcCCeeEEeec----CeeEEEeCCHHHHHHHHhhCCcccCCCc
Q 048567 64 HVSLHSLSQKYGPIIQLKFG----LETVVVASSAEVAELILKTHDLTFASRP 111 (352)
Q Consensus 64 ~~~~~~~~~kYG~i~~i~~g----~~~~vvv~~~~~i~eil~~~~~~f~~r~ 111 (352)
...+.++..+||+|..+++. +.-+|-..+++.+..++... ..+.+|+
T Consensus 31 e~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~-~~~~g~~ 81 (100)
T 2d9o_A 31 KDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNE-VGLVDNP 81 (100)
T ss_dssp HHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTC-CBCSSSB
T ss_pred HHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhc-CCCCCCe
Confidence 46688899999999988873 23466678999999888763 2344444
No 183
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=39.45 E-value=42 Score=23.99 Aligned_cols=49 Identities=20% Similarity=0.221 Sum_probs=33.7
Q ss_pred cccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhh
Q 048567 52 LIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKT 102 (352)
Q Consensus 52 i~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~ 102 (352)
++||+..- --...+.++..+||+|..+++-. .-+|-..+++.++.++..
T Consensus 44 ~V~nlp~~--~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 101 (118)
T 2khc_A 44 FIYHLPQE--FTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKA 101 (118)
T ss_dssp EEECSCTT--CCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHH
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 56666531 23456788889999998888632 224557788888888864
No 184
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.04 E-value=92 Score=21.37 Aligned_cols=60 Identities=17% Similarity=0.057 Sum_probs=40.4
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeec---------CeeEEEeCCHHHHHHHHhh-CCcccCCCc
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG---------LETVVVASSAEVAELILKT-HDLTFASRP 111 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g---------~~~~vvv~~~~~i~eil~~-~~~~f~~r~ 111 (352)
--++|||..- -....+.++..+||+|..+++- +.-+|-..+++.++.++.. ++..+.+++
T Consensus 15 ~l~V~nLp~~--~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2dnm_A 15 TLKVDNLTYR--TSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRE 84 (103)
T ss_dssp EEEEESCCTT--CCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBC
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 4567888642 2345678888999999988863 1235667888888888874 444454443
No 185
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.78 E-value=86 Score=20.92 Aligned_cols=60 Identities=20% Similarity=0.226 Sum_probs=40.2
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeec-CeeEEEeCCHHHHHHHHhh-CCcccCCCc
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG-LETVVVASSAEVAELILKT-HDLTFASRP 111 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g-~~~~vvv~~~~~i~eil~~-~~~~f~~r~ 111 (352)
--++||+..- -....+.++..+||+|..+++- +.-+|-..+++.++.++.. ++..+.++.
T Consensus 10 ~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 71 (90)
T 2dnq_A 10 KLFIGNLPRE--ATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVN 71 (90)
T ss_dssp EEEEESCCSS--CCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccCCcE
Confidence 4567887642 2345578889999999888863 3445667899999988853 333444443
No 186
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=38.77 E-value=84 Score=22.60 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=38.3
Q ss_pred CcccccccCCCCCcHHHHHHHhhcCCeeEEeec--------CeeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 51 PLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG--------LETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 51 pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g--------~~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
-++||+..- -....+.++..+||+|..+++- +.-+|-..+++.++.++.. ++..+.+|
T Consensus 38 l~V~nlp~~--~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 104 (124)
T 2kt5_A 38 LLVSNLDFG--VSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGR 104 (124)
T ss_dssp EEEESCCSS--CCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSC
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 467777532 2345578888999999888763 2335667899999988873 44344443
No 187
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=38.76 E-value=26 Score=24.37 Aligned_cols=57 Identities=14% Similarity=0.278 Sum_probs=37.1
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeec--------CeeEEEeCCHHHHHHHHhhCCcccCC
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG--------LETVVVASSAEVAELILKTHDLTFAS 109 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g--------~~~~vvv~~~~~i~eil~~~~~~f~~ 109 (352)
--++||+.. .-....+.++..+||+|..+++- +.-+|-..+++.++.++. ++..+.+
T Consensus 11 ~l~V~nLp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g 75 (102)
T 2xs2_A 11 TVFVGGIDV--RMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHG 75 (102)
T ss_dssp EEEEECCCT--TCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETT
T ss_pred EEEEeCCCC--CCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECC
Confidence 346777753 22345577888999999888762 123555678888888887 4434443
No 188
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=38.68 E-value=49 Score=30.47 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=40.1
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeec---------CeeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG---------LETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g---------~~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
.-|||||..- -....+.+++.+||+|..+++- +.-+|...+++.+..++.. ++..+.++
T Consensus 104 ~lfV~nL~~~--~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr 172 (437)
T 3pgw_S 104 TLFVARVNYD--TTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGR 172 (437)
T ss_pred EEEEeCCCCC--CCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCE
Confidence 4578887542 2345678888999999888762 2345667899999988865 44445444
No 189
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.62 E-value=97 Score=21.50 Aligned_cols=51 Identities=12% Similarity=0.018 Sum_probs=36.0
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCC-eeEEeec----------CeeEEEeCCHHHHHHHHhh
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGP-IIQLKFG----------LETVVVASSAEVAELILKT 102 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~-i~~i~~g----------~~~~vvv~~~~~i~eil~~ 102 (352)
--++|||.. .-....+.++..+||+ |..+.+- +.-+|-..+++.+..++..
T Consensus 10 ~l~V~nLp~--~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 71 (109)
T 2dis_A 10 RLFIGGIPK--MKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRK 71 (109)
T ss_dssp EEEEECCCT--TSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTT
T ss_pred EEEEeCCCC--cCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHH
Confidence 346788753 2234567788899998 9888764 2335667899999998875
No 190
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=38.44 E-value=83 Score=20.67 Aligned_cols=55 Identities=11% Similarity=0.264 Sum_probs=36.5
Q ss_pred CcccccccCCCCCcHHHHHHHhhc----C-------CeeEEeec---CeeEEEeCCHHHHHHHHhhCCccc
Q 048567 51 PLIGNLNLIGQLPHVSLHSLSQKY----G-------PIIQLKFG---LETVVVASSAEVAELILKTHDLTF 107 (352)
Q Consensus 51 pi~G~l~~~~~~~~~~~~~~~~kY----G-------~i~~i~~g---~~~~vvv~~~~~i~eil~~~~~~f 107 (352)
-++||+.. .-....+.++..+| | +|..+++. +.=+|-..+++.++.++.-++..+
T Consensus 9 l~V~nLp~--~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~~l~g~~~ 77 (87)
T 2hzc_A 9 LYVGNIPF--GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIF 77 (87)
T ss_dssp EEEESCCT--TCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHGGGTTCEE
T ss_pred EEEeCCCC--CCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHHhcCCCEE
Confidence 36777754 22345577788888 8 89888874 334566789999998883343333
No 191
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.38 E-value=82 Score=20.61 Aligned_cols=51 Identities=14% Similarity=0.184 Sum_probs=36.7
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeec---CeeEEEeCCHHHHHHHHhh
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG---LETVVVASSAEVAELILKT 102 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g---~~~~vvv~~~~~i~eil~~ 102 (352)
--++||+.. .-....+.++..+||+|..+++- +.-+|-..+++.+..++..
T Consensus 14 ~l~V~~l~~--~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~ 67 (85)
T 2ytc_A 14 TLYVGGLGD--TITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEK 67 (85)
T ss_dssp CEEEECCTT--TSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHT
T ss_pred EEEEcCCCC--CCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHH
Confidence 457788764 22345678888999999888863 2345667899999998864
No 192
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=38.17 E-value=57 Score=24.67 Aligned_cols=58 Identities=17% Similarity=0.316 Sum_probs=38.1
Q ss_pred CcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhhCCcccCCC
Q 048567 51 PLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKTHDLTFASR 110 (352)
Q Consensus 51 pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~~~~~f~~r 110 (352)
-++||+.. .-....+.++..+||+|..+++-. .-+|-..+++.+..++..++..+.+|
T Consensus 90 l~V~nlp~--~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~ 156 (167)
T 2cjk_A 90 IFVGGIGP--DVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDR 156 (167)
T ss_dssp EEEEEECT--TCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSS
T ss_pred EEECCCCC--CCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCe
Confidence 45667653 223455778889999998887532 23455789999999987544444443
No 193
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=38.05 E-value=44 Score=22.41 Aligned_cols=56 Identities=16% Similarity=0.256 Sum_probs=33.7
Q ss_pred cccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 52 LIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 52 i~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
++||+..- -....+.++..+||+|..+++-. .-+|-..+++ +..++.. ++..+.+|
T Consensus 5 ~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~ 70 (90)
T 2ki2_A 5 YVGNLVYS--ATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGR 70 (90)
T ss_dssp EEEEECTT--SSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSS
T ss_pred EECCCCCC--CCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCe
Confidence 45666431 22344667788999998888632 2245577888 7777764 33334433
No 194
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=37.79 E-value=88 Score=22.00 Aligned_cols=52 Identities=15% Similarity=0.159 Sum_probs=37.2
Q ss_pred CCCCcccccccCCCCCcHHHHHHHhhcCCeeEEeec---CeeEEEeCCHHHHHHHHh
Q 048567 48 KPWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG---LETVVVASSAEVAELILK 101 (352)
Q Consensus 48 ~~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g---~~~~vvv~~~~~i~eil~ 101 (352)
...-++|||.. .--...+.++..+||.|..+++- +.=+|-..+.+.+..++.
T Consensus 15 ~~~l~V~nLp~--~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 69 (104)
T 1wex_A 15 SPVVHVRGLCE--SVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVT 69 (104)
T ss_dssp CSEEEEESCCS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCCC--CCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 34567888764 22345678899999999988863 234566788888888876
No 195
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=37.78 E-value=94 Score=22.95 Aligned_cols=59 Identities=17% Similarity=0.119 Sum_probs=39.6
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
--++|||..- -....+.++..+||+|..+++-. .-+|-..+++.++.++.. ++..+.++
T Consensus 49 ~l~V~nLp~~--~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~ 117 (135)
T 2lea_A 49 SLKVDNLTYR--TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 117 (135)
T ss_dssp CEEEECCCSS--CHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3467877532 22455778889999998888642 236668899999999864 33334443
No 196
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.65 E-value=89 Score=21.30 Aligned_cols=58 Identities=17% Similarity=0.046 Sum_probs=39.1
Q ss_pred CCcccccccCCCCCcHHHHHHHhhc--CCeeEEeec-CeeEEEeCCHHHHHHHHhh-CCcccCC
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKY--GPIIQLKFG-LETVVVASSAEVAELILKT-HDLTFAS 109 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kY--G~i~~i~~g-~~~~vvv~~~~~i~eil~~-~~~~f~~ 109 (352)
.-++||+..- -....+.++..+| |.|..+++- +.-+|-..+++.+..++.. ++..+.+
T Consensus 17 ~l~V~nLp~~--~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 78 (99)
T 2cpd_A 17 ILYVRNLMLS--TSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDG 78 (99)
T ss_dssp EEEEESCCTT--CCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEETT
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 4577887642 2345678888999 889888864 3445667899999988873 4433433
No 197
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=37.63 E-value=97 Score=21.20 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=35.9
Q ss_pred CcccccccCCCCCcHHHHHHHhhcCCeeEEeec-CeeEEEeCCHHHHHHHHhh
Q 048567 51 PLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG-LETVVVASSAEVAELILKT 102 (352)
Q Consensus 51 pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g-~~~~vvv~~~~~i~eil~~ 102 (352)
-++||+..- .-....+.++..+||+|..+++. +.-+|-..+++.++.++..
T Consensus 25 l~V~nLp~~-~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~ 76 (97)
T 2xnq_A 25 LFIGNLPLK-NVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEX 76 (97)
T ss_dssp EEEESCCSS-CCCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCcc-cCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHH
Confidence 467887630 11245578888999999988874 3445667899999988874
No 198
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=37.51 E-value=92 Score=21.08 Aligned_cols=49 Identities=16% Similarity=0.276 Sum_probs=34.4
Q ss_pred cccccccCCCCCcHHHHHHHhhcCCeeEEeec---------CeeEEEeCCHHHHHHHHhh
Q 048567 52 LIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG---------LETVVVASSAEVAELILKT 102 (352)
Q Consensus 52 i~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g---------~~~~vvv~~~~~i~eil~~ 102 (352)
++||+.. .-....+.++..+||+|..+++- +.-+|-..+++.+..++..
T Consensus 6 ~V~nLp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 63 (96)
T 2x1f_A 6 YLGSIPY--DQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRN 63 (96)
T ss_dssp EEESCCT--TCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHH
T ss_pred EEECCCC--CCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH
Confidence 5677653 12345578888999999988863 2235667899999988854
No 199
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=37.42 E-value=49 Score=22.29 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=34.9
Q ss_pred cccccccCCCCCcHHHHHHHhhcC--CeeEEeecC---------eeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 52 LIGNLNLIGQLPHVSLHSLSQKYG--PIIQLKFGL---------ETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 52 i~G~l~~~~~~~~~~~~~~~~kYG--~i~~i~~g~---------~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
++||+.. .-....+.++..+|| +|..+++-. .-+|-..+++.++.++.. ++..+.+|
T Consensus 5 ~V~nL~~--~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr 73 (90)
T 3p5t_L 5 YIGNLTW--WTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ 73 (90)
T ss_dssp EEESCCT--TCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSC
T ss_pred EEeCCCC--CCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCE
Confidence 5677653 123456788889999 887777521 124557789988888753 33344444
No 200
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=36.73 E-value=1.1e+02 Score=21.55 Aligned_cols=54 Identities=19% Similarity=0.065 Sum_probs=38.7
Q ss_pred CCCCCcccccccCCCCCcHHHHHHHhhcCCeeEEeec---CeeEEEeCCHHHHHHHHhh
Q 048567 47 PKPWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG---LETVVVASSAEVAELILKT 102 (352)
Q Consensus 47 p~~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g---~~~~vvv~~~~~i~eil~~ 102 (352)
|...-++||+..- --...+.++..+||+|..+++- +.-+|-..+.+.++.++..
T Consensus 20 ps~~l~V~NLp~~--~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ 76 (100)
T 3r27_A 20 ASPVVHIRGLIDG--VVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNY 76 (100)
T ss_dssp CCSEEEEESCCTT--CCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCC--CCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHH
Confidence 4446688998642 2345678899999999888763 3456667899988888754
No 201
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=36.52 E-value=65 Score=24.16 Aligned_cols=57 Identities=23% Similarity=0.260 Sum_probs=37.1
Q ss_pred cccccccCCCCCcHHHHHHHhhcCCeeEEeec--------CeeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 52 LIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG--------LETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 52 i~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g--------~~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
++||++. .-....+.++.++||+|..+++- +.-+|-..+++.+..++.. ++..+.++
T Consensus 4 ~V~nlp~--~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 69 (166)
T 3md3_A 4 YVGNLDK--AITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENN 69 (166)
T ss_dssp EEEEEET--TCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred EECCCCC--cCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCC
Confidence 4566653 22345678889999999888862 1235667899999988843 44444433
No 202
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=36.45 E-value=87 Score=21.63 Aligned_cols=51 Identities=20% Similarity=0.189 Sum_probs=36.0
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhh
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKT 102 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~ 102 (352)
--++|||.. .-....+.++..+||+|..+++-. .-+|-..+++.++.++..
T Consensus 15 ~l~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 74 (106)
T 2dgp_A 15 KLFIGQIPR--NLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 74 (106)
T ss_dssp EEEEESCCT--TCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCC--CCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 346788764 223456788899999998888632 235567899999888863
No 203
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.68 E-value=69 Score=22.31 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=32.9
Q ss_pred HHHHHHHhhcCCeeEEee-cCeeEEEeCCHHHHHHHHhhCCcccCCC
Q 048567 65 VSLHSLSQKYGPIIQLKF-GLETVVVASSAEVAELILKTHDLTFASR 110 (352)
Q Consensus 65 ~~~~~~~~kYG~i~~i~~-g~~~~vvv~~~~~i~eil~~~~~~f~~r 110 (352)
..+.+...+||.|..+++ ...-+|-..+.+.+..++.-++..+.+|
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~mnG~~v~Gr 76 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLSLNGKELLNR 76 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGGGTTCEETTE
T ss_pred HHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHhcCCeEeCCe
Confidence 445566678999999995 4455677889999988887655544444
No 204
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.02 E-value=88 Score=21.50 Aligned_cols=51 Identities=10% Similarity=0.072 Sum_probs=36.0
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhh
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKT 102 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~ 102 (352)
--++|||..- -....+.++..+||+|..+++-. .-+|-..+++.++.++..
T Consensus 17 ~l~v~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 17 DLIVLGLPWK--TTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CEEEESCCSS--CCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred EEEEEcCCCc--CCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 4577887542 23455788889999998877621 235557899999999874
No 205
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=34.98 E-value=59 Score=25.38 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=38.7
Q ss_pred CcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhhCCcccCCC
Q 048567 51 PLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKTHDLTFASR 110 (352)
Q Consensus 51 pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~~~~~f~~r 110 (352)
-++||+.. .-....+.++..+||+|..+++-. .-+|-..+++.+..++..++..+.+|
T Consensus 107 l~V~nLp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~ 173 (196)
T 1l3k_A 107 IFVGGIKE--DTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGH 173 (196)
T ss_dssp EEEECCTT--TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTE
T ss_pred EEEeCCCC--CCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCE
Confidence 35677653 123456788889999998877532 13555789999999987655444443
No 206
>1b35_D CRPV, protein (cricket paralysis virus, VP4); insect picorna-like virus, icosahedral virus; 2.40A {Cricket paralysis virus} SCOP: b.121.4.1
Probab=34.89 E-value=24 Score=21.32 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=17.1
Q ss_pred CCCcccccccCCCCCcHHHHHHHhhcC
Q 048567 49 PWPLIGNLNLIGQLPHVSLHSLSQKYG 75 (352)
Q Consensus 49 ~~pi~G~l~~~~~~~~~~~~~~~~kYG 75 (352)
..|++||++.-+........++++-+|
T Consensus 30 ~ipilgn~fs~pawisa~~~~~~k~~g 56 (57)
T 1b35_D 30 HIPVLGNIFSTPAWISAKAADLAKLFG 56 (57)
T ss_dssp CCCCSCCSSSSCTTCCCCHHHHHHHTT
T ss_pred ccccccccccchHHHHHHHHHHHHHhC
Confidence 489999998754444444555655544
No 207
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.34 E-value=48 Score=23.65 Aligned_cols=59 Identities=12% Similarity=0.090 Sum_probs=38.4
Q ss_pred CCCCCcccccccCCCCCcHHHHHHHhhcCCe-eEEee-----c---CeeEEEeCCHHHHHHHHhhCCccc
Q 048567 47 PKPWPLIGNLNLIGQLPHVSLHSLSQKYGPI-IQLKF-----G---LETVVVASSAEVAELILKTHDLTF 107 (352)
Q Consensus 47 p~~~pi~G~l~~~~~~~~~~~~~~~~kYG~i-~~i~~-----g---~~~~vvv~~~~~i~eil~~~~~~f 107 (352)
+...-++|||..- --...+.++..+||.| ..+++ | +.-+|-..+++.++.++..+...+
T Consensus 14 ~~~~l~V~nLp~~--~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~ 81 (114)
T 2cpy_A 14 AKVCAHITNIPFS--ITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKL 81 (114)
T ss_dssp CCCEEEEESCCTT--SCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEE
T ss_pred CccEEEEeCcCCc--CCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCcc
Confidence 3334577887642 2345578888999998 44454 1 234666889999999987644333
No 208
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=34.06 E-value=68 Score=24.06 Aligned_cols=57 Identities=19% Similarity=0.192 Sum_probs=37.3
Q ss_pred cccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 52 LIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 52 i~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
++||++. .-....+.++..+||+|..+++-. .-+|-..+++.++.++.. ++..+.++
T Consensus 6 ~v~nlp~--~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 72 (167)
T 1fxl_A 6 IVNYLPQ--NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK 72 (167)
T ss_dssp EEESCCT--TCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred EEcCCCC--CCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCc
Confidence 4566643 123455778889999998877521 235668899999999864 44344433
No 209
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=34.02 E-value=64 Score=27.30 Aligned_cols=60 Identities=13% Similarity=0.102 Sum_probs=41.3
Q ss_pred CCCcccccccCCCCCcHHHHHHHhhcCCeeEEeec-------CeeEEEeCCHHHHHHHHhhCCcccCCC
Q 048567 49 PWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG-------LETVVVASSAEVAELILKTHDLTFASR 110 (352)
Q Consensus 49 ~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g-------~~~~vvv~~~~~i~eil~~~~~~f~~r 110 (352)
.--++|||+. .--...+.++..+||+|..+++- +.=+|-..+++.++.++..++..+.++
T Consensus 42 ~~l~V~nLp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~ 108 (292)
T 2ghp_A 42 TTVLVKNLPK--SYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQN 108 (292)
T ss_dssp CEEEEEEECT--TCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTE
T ss_pred CEEEEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCc
Confidence 3557888864 22345678889999999887752 233566889999999996554444444
No 210
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=33.76 E-value=79 Score=22.14 Aligned_cols=60 Identities=20% Similarity=0.206 Sum_probs=38.8
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC-eeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL-ETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~-~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
--++||+..-. --...+.++..+||+|..+++.. .-+|-..+++.++.++.. ++..+.++
T Consensus 29 ~l~V~nl~~~~-~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 90 (110)
T 1wf1_A 29 RVFIGNLNTAL-VKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLAGQ 90 (110)
T ss_dssp EEEECSCCCSS-CCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHHTTCEETTE
T ss_pred EEEEeCCCccc-CCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 34678875410 23456788899999998888732 334557788888888854 44344433
No 211
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.59 E-value=66 Score=22.79 Aligned_cols=67 Identities=19% Similarity=0.085 Sum_probs=42.1
Q ss_pred CCCCCCCCcccccccCCC---C------CcHHHHHHHhhcCCeeEEeec-----CeeEEEeCCHHHHHHHHhh-CCcccC
Q 048567 44 PPGPKPWPLIGNLNLIGQ---L------PHVSLHSLSQKYGPIIQLKFG-----LETVVVASSAEVAELILKT-HDLTFA 108 (352)
Q Consensus 44 ~PGp~~~pi~G~l~~~~~---~------~~~~~~~~~~kYG~i~~i~~g-----~~~~vvv~~~~~i~eil~~-~~~~f~ 108 (352)
-|.|...-++.|+..-.. + ....+.+...+||+|..+.+- +.-+|-..+++.+..++.. ++..+.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 345556677788854311 1 124567788899999887762 2345667789988888864 333444
Q ss_pred CC
Q 048567 109 SR 110 (352)
Q Consensus 109 ~r 110 (352)
+|
T Consensus 91 gr 92 (112)
T 2dit_A 91 GR 92 (112)
T ss_dssp TE
T ss_pred Cc
Confidence 44
No 212
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=33.53 E-value=94 Score=21.87 Aligned_cols=57 Identities=14% Similarity=0.047 Sum_probs=39.4
Q ss_pred CCCCCCCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---eeEEEeCCHHHHHHHHhh
Q 048567 45 PGPKPWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---ETVVVASSAEVAELILKT 102 (352)
Q Consensus 45 PGp~~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---~~~vvv~~~~~i~eil~~ 102 (352)
+.|...-++|||..- .--..-+.++..+||.|..+++-. .-+|-..+++.+..++..
T Consensus 12 ~~p~~~l~V~nLp~~-~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~ 71 (102)
T 1x4d_A 12 VETRRVVHIMDFQRG-KNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDY 71 (102)
T ss_dssp CCCCCEEEEESCCCS-SSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCC-cCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHH
Confidence 345555678998641 112345778889999999988642 346778899988888763
No 213
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=33.35 E-value=1.2e+02 Score=23.59 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=32.8
Q ss_pred cHHHHHHHhhcCCeeEEeec--------CeeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 64 HVSLHSLSQKYGPIIQLKFG--------LETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 64 ~~~~~~~~~kYG~i~~i~~g--------~~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
...+.++..+||+|..+++- +.-+|...+++.++.++.. ++..+.++
T Consensus 102 e~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr 157 (177)
T 2f3j_A 102 DADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGR 157 (177)
T ss_dssp HHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSS
T ss_pred HHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCE
Confidence 45578888999999888863 2235667899999988874 33334443
No 214
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.75 E-value=48 Score=24.36 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=36.9
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCe----eEEee-----c---CeeEEEeCCHHHHHHHHhhCCcccCC
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPI----IQLKF-----G---LETVVVASSAEVAELILKTHDLTFAS 109 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i----~~i~~-----g---~~~~vvv~~~~~i~eil~~~~~~f~~ 109 (352)
.-++|||+. .--...+.++..+||+| ..+++ | +.-+|...+++.++.++..+...+.+
T Consensus 25 ~v~V~nLp~--~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~g 94 (123)
T 2dha_A 25 IVRMRGLPF--TATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGK 94 (123)
T ss_dssp EEEECSCCT--TCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSS
T ss_pred EEEEeCCCC--CCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCC
Confidence 456777754 22345678899999975 23443 2 12356678999999999765444433
No 215
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=32.70 E-value=1.3e+02 Score=21.82 Aligned_cols=50 Identities=22% Similarity=0.227 Sum_probs=34.6
Q ss_pred CcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhh
Q 048567 51 PLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKT 102 (352)
Q Consensus 51 pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~ 102 (352)
-++||+..- -....+.++..+||+|..+++-. .-+|-..+++.++.++..
T Consensus 66 l~v~nlp~~--~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 124 (140)
T 2ku7_A 66 LYVGGLAEE--VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 124 (140)
T ss_dssp EEEECCCTT--CCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCCC--CCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 356666431 22456788889999999888622 235667899999988854
No 216
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.02 E-value=55 Score=21.85 Aligned_cols=47 Identities=13% Similarity=0.236 Sum_probs=32.7
Q ss_pred CcccccccCCCCCcHHHHHHHhhcCCeeEEeec----CeeEEEeCCHHHHHHH
Q 048567 51 PLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG----LETVVVASSAEVAELI 99 (352)
Q Consensus 51 pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g----~~~~vvv~~~~~i~ei 99 (352)
-++||+..- --...+.++..+||+|..+++- +.-+|-..+++.++.+
T Consensus 8 l~V~nLp~~--~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 8 VFVGRCTGD--MTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp EEEESCCSS--SCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHT
T ss_pred EEEeCCCCC--CCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHH
Confidence 356777542 2345677888999999988863 2346667888888754
No 217
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=31.88 E-value=1.4e+02 Score=24.09 Aligned_cols=60 Identities=23% Similarity=0.318 Sum_probs=41.1
Q ss_pred CcccccccCCCCCcHHHHHHHhhcCCeeEEeec----CeeEEEeCCHHHHHHHHh-hCCcccCCCc
Q 048567 51 PLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG----LETVVVASSAEVAELILK-THDLTFASRP 111 (352)
Q Consensus 51 pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g----~~~~vvv~~~~~i~eil~-~~~~~f~~r~ 111 (352)
-++||+..- .--...+.++..+||+|..+++- +.-+|-..+++.++.++. -++..+.+|+
T Consensus 37 l~V~nLp~~-~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 101 (229)
T 2adc_A 37 LLVSNLNPE-RVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP 101 (229)
T ss_dssp EEEESCCTT-TCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSB
T ss_pred EEEeCCCcc-cCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 467888640 11235678888999999988864 334677889999999986 3444555544
No 218
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.83 E-value=67 Score=22.61 Aligned_cols=59 Identities=14% Similarity=0.132 Sum_probs=38.5
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCee--------EEeecC---------eeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPII--------QLKFGL---------ETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~--------~i~~g~---------~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
--++|||.. .-....+.++..+||+|. .+++-. .=+|-..+++.++.++.. ++..+.+|
T Consensus 17 ~l~V~nLp~--~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (113)
T 2cpe_A 17 AIYVQGLND--SVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGS 93 (113)
T ss_dssp EEEEECCCT--TCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTE
T ss_pred EEEEcCCCC--CCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCC
Confidence 346788763 223456788899999987 455422 235667899999998874 44444443
No 219
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=31.82 E-value=48 Score=19.65 Aligned_cols=7 Identities=0% Similarity=0.093 Sum_probs=2.8
Q ss_pred CCCCchH
Q 048567 7 ASPSDSV 13 (352)
Q Consensus 7 ~~~~~~~ 13 (352)
.+|....
T Consensus 5 ~~s~~~a 11 (44)
T 2l2t_A 5 QHARTPL 11 (44)
T ss_dssp SSCSSHH
T ss_pred CCCCcce
Confidence 3444433
No 220
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=31.76 E-value=85 Score=21.60 Aligned_cols=62 Identities=13% Similarity=0.115 Sum_probs=39.3
Q ss_pred CCCCCCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhhCCcccCCC
Q 048567 46 GPKPWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKTHDLTFASR 110 (352)
Q Consensus 46 Gp~~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~~~~~f~~r 110 (352)
.|..--++|||..- --...+.++..+|| |..+++-. .-+|-..+++.++.++.-++..+.+|
T Consensus 13 ~~~~~l~V~nLp~~--~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~ 83 (103)
T 2dng_A 13 EPPYTAYVGNLPFN--TVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDR 83 (103)
T ss_dssp SSCEEEEEESCCTT--CCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTE
T ss_pred CCCeEEEEeCCCCC--CCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCe
Confidence 33345578888642 23455778889997 88877531 22566789999999984344444433
No 221
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=31.25 E-value=65 Score=24.26 Aligned_cols=59 Identities=10% Similarity=0.047 Sum_probs=40.1
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeec--------CeeEEEeCCHHHHHHHHhhCCcccCCCc
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG--------LETVVVASSAEVAELILKTHDLTFASRP 111 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g--------~~~~vvv~~~~~i~eil~~~~~~f~~r~ 111 (352)
.-++|||.. .-....+.++..+|| +..+++- +.-+|-..+++.++.++..+...+.+|.
T Consensus 48 ~lfV~nLp~--~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~ 114 (139)
T 2hgn_A 48 CVHMRGLPY--KATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRY 114 (139)
T ss_dssp CEECCSCCT--TCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCC
T ss_pred EEEEeCCCC--CCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEE
Confidence 346777754 223456888899999 6677753 1346778899999999865555555554
No 222
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=30.06 E-value=78 Score=25.39 Aligned_cols=52 Identities=21% Similarity=0.207 Sum_probs=37.1
Q ss_pred CCCcccccccCCCCCcHHHHHHHhhcCCeeEEeec------C---eeEEEeCCHHHHHHHHhh
Q 048567 49 PWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG------L---ETVVVASSAEVAELILKT 102 (352)
Q Consensus 49 ~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g------~---~~~vvv~~~~~i~eil~~ 102 (352)
.--++|||.. .--...+.++..+||+|..+++- . .-+|-..+++.+..++..
T Consensus 16 ~tlfVgnLp~--~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ 76 (213)
T 4f02_A 16 ASLYVGDLHP--DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76 (213)
T ss_dssp CEEEEESCCT--TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred cEEEEeCCCC--CCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHH
Confidence 3457898864 22345678889999999888752 1 236668899999988865
No 223
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=30.03 E-value=1.4e+02 Score=20.69 Aligned_cols=52 Identities=17% Similarity=0.126 Sum_probs=37.0
Q ss_pred CCCcccccccCCCCCcHHHHHHHhhcCCeeEEeec---------CeeEEEeCCHHHHHHHHhh
Q 048567 49 PWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG---------LETVVVASSAEVAELILKT 102 (352)
Q Consensus 49 ~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g---------~~~~vvv~~~~~i~eil~~ 102 (352)
..-++|||..- -....+.++..+||+|..+++- +.=+|-..+++.+..++..
T Consensus 16 ~~l~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 76 (111)
T 1x4h_A 16 KTVFIRNLSFD--SEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA 76 (111)
T ss_dssp CCEEEESCCTT--CCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHH
T ss_pred CEEEEECCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHH
Confidence 35678888642 2345577888999999888863 1235667899999988865
No 224
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.94 E-value=1.3e+02 Score=21.09 Aligned_cols=61 Identities=18% Similarity=0.226 Sum_probs=38.9
Q ss_pred CCCcccccccCCCCCcHHHHHHHhhcCCe----eEEee--c---CeeEEEeCCHHHHHHHHhh-CCcccCCCc
Q 048567 49 PWPLIGNLNLIGQLPHVSLHSLSQKYGPI----IQLKF--G---LETVVVASSAEVAELILKT-HDLTFASRP 111 (352)
Q Consensus 49 ~~pi~G~l~~~~~~~~~~~~~~~~kYG~i----~~i~~--g---~~~~vvv~~~~~i~eil~~-~~~~f~~r~ 111 (352)
.--++||+.. .-....+.++..+||+| +.+.+ | +.-+|-..+++.++.++.. ++..+.+++
T Consensus 26 ~~l~V~nLp~--~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 96 (115)
T 2cpx_A 26 KVLYLKNLSP--RVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKI 96 (115)
T ss_dssp SEEEEECCCT--TCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCB
T ss_pred CEEEEeCCCC--CCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 3557888764 22345577888899987 55553 2 2335667899999998875 444444443
No 225
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=28.63 E-value=1e+02 Score=22.66 Aligned_cols=55 Identities=13% Similarity=0.018 Sum_probs=36.4
Q ss_pred cccccccCCCCCcHHHHHHHhhcCCeeEEeec---C-eeEEEeCCHHHHHHHHhh-CCcccC
Q 048567 52 LIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG---L-ETVVVASSAEVAELILKT-HDLTFA 108 (352)
Q Consensus 52 i~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g---~-~~~vvv~~~~~i~eil~~-~~~~f~ 108 (352)
++||+.. .--...+.++..+||.|-.+++. + .-+|-..+++.+..++.. ++..+.
T Consensus 29 ~V~NL~~--~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~ 88 (124)
T 2e5i_A 29 SIQNPLY--PITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIY 88 (124)
T ss_dssp EEESCCS--CCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCB
T ss_pred EEcCcCC--CCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEec
Confidence 4688753 22245688899999999877752 2 246667888888777764 443443
No 226
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=28.37 E-value=1.4e+02 Score=22.37 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=37.8
Q ss_pred cccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 52 LIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 52 i~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
++||++. .-....+.++..+||+|..+++-. .-+|-..+++.++.++.. ++..+.++
T Consensus 7 ~v~nlp~--~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 73 (168)
T 1b7f_A 7 IVNYLPQ--DMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNK 73 (168)
T ss_dssp EEECCCT--TCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCc
Confidence 5677653 223455788899999998887532 345667899999998863 44344433
No 227
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.90 E-value=1.5e+02 Score=20.48 Aligned_cols=59 Identities=17% Similarity=0.157 Sum_probs=39.1
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC------eeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL------ETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~------~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
--++|||..- -....+.++..+||+|..+++-. .-+|-..+++.++.++.. +...+.++
T Consensus 24 ~l~V~nLp~~--~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 89 (109)
T 1x4a_A 24 RIYVGNLPPD--IRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY 89 (109)
T ss_dssp EEEEESCCTT--CCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 4467887542 23456788999999998877632 235668899999988853 33334333
No 228
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.38 E-value=86 Score=21.81 Aligned_cols=59 Identities=12% Similarity=0.076 Sum_probs=38.9
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeec--------CeeEEEeCCHHHHHHHHhhCCcccCCCc
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG--------LETVVVASSAEVAELILKTHDLTFASRP 111 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g--------~~~~vvv~~~~~i~eil~~~~~~f~~r~ 111 (352)
.-++|||+.- --...+.++..+||.+ .+++- +.-+|-..+++.++.++..+...+.+|.
T Consensus 17 ~l~V~nLp~~--~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 83 (102)
T 1wez_A 17 CVHMRGLPYR--ATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRY 83 (102)
T ss_dssp EEEEESCCTT--CCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSC
T ss_pred EEEEeCCCCC--CCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcE
Confidence 4467887642 2345677888899954 76652 1235667899999999876655565554
No 229
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.27 E-value=68 Score=22.56 Aligned_cols=46 Identities=17% Similarity=0.279 Sum_probs=32.5
Q ss_pred HHHHHHHhhcCCeeEEee-cCeeEEEeCCHHHHHHHHhhCCcccCCC
Q 048567 65 VSLHSLSQKYGPIIQLKF-GLETVVVASSAEVAELILKTHDLTFASR 110 (352)
Q Consensus 65 ~~~~~~~~kYG~i~~i~~-g~~~~vvv~~~~~i~eil~~~~~~f~~r 110 (352)
..+.+....||.|+.+++ ...-+|...+.+.+..++.-++..+.+|
T Consensus 39 ~~L~~~F~~~G~Vilvr~v~d~~fVtF~d~~sAl~AI~ldG~~v~Gr 85 (95)
T 1ufw_A 39 TELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLDVDGMKVKGR 85 (95)
T ss_dssp HHHHHHHHHHSCCSEEEEETTEEEEECSCSHHHHHHHHGGGSEETTE
T ss_pred HHHHHHHHHCCCEEEEEEecCcEEEEEcChHHHHHHHhcCCeeeCCe
Confidence 445666678999988885 5555666789998888887555555444
No 230
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.04 E-value=1.1e+02 Score=20.64 Aligned_cols=51 Identities=20% Similarity=0.205 Sum_probs=35.1
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEE-eecC---------eeEEEeCCHHHHHHHHhh
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQL-KFGL---------ETVVVASSAEVAELILKT 102 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i-~~g~---------~~~vvv~~~~~i~eil~~ 102 (352)
--++||+..- -....+.++..+||+|..+ ++-. .-+|-..+++.++.++..
T Consensus 7 ~l~V~nLp~~--~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 67 (96)
T 1x5t_A 7 GIFIGNLDPE--IDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 67 (96)
T ss_dssp EEEEECCCTT--CCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHT
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHH
Confidence 3467777542 2345678888999998766 5422 235667899999999873
No 231
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=26.93 E-value=1.1e+02 Score=21.39 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=26.2
Q ss_pred hhcCCeeEEeecC--------eeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 72 QKYGPIIQLKFGL--------ETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 72 ~kYG~i~~i~~g~--------~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
.+||+|..+++-. .-+|-..+++.+..++.. ++..|.+|
T Consensus 49 ~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr 96 (104)
T 1jmt_A 49 EKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQ 96 (104)
T ss_dssp HHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred ccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCE
Confidence 8999999988642 224446788888877764 44445544
No 232
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=26.59 E-value=1.5e+02 Score=22.27 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=34.9
Q ss_pred CCCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhh
Q 048567 49 PWPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKT 102 (352)
Q Consensus 49 ~~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~ 102 (352)
..-++||++. .-....+.++..+||+|..+++-. .-+|-..+++.+..++..
T Consensus 95 ~~l~v~nlp~--~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (172)
T 2g4b_A 95 HKLFIGGLPN--YLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 155 (172)
T ss_dssp TCEEEECCCT--TCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHH
T ss_pred CEEEEEcCCC--cCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 3456777754 223456788889999998877622 134556788888888764
No 233
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.58 E-value=1.1e+02 Score=21.51 Aligned_cols=51 Identities=20% Similarity=0.244 Sum_probs=35.4
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC--------eeEEEeCCHHHHHHHHhh
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL--------ETVVVASSAEVAELILKT 102 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~--------~~~vvv~~~~~i~eil~~ 102 (352)
--++||+..- -....+.++..+||+|..+++-. .-+|-..+++.+..++..
T Consensus 27 ~l~V~nlp~~--~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 85 (114)
T 1x5o_A 27 NLYISNLPLS--MDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGH 85 (114)
T ss_dssp EEEEESCCTT--CCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHH
Confidence 4467887542 23455788889999998887621 235557899999988873
No 234
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=26.35 E-value=1.4e+02 Score=23.23 Aligned_cols=59 Identities=24% Similarity=0.336 Sum_probs=38.9
Q ss_pred cccccccCCCCCcHHHHHHHhhcCCeeEEeec----CeeEEEeCCHHHHHHHHh-hCCcccCCCc
Q 048567 52 LIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG----LETVVVASSAEVAELILK-THDLTFASRP 111 (352)
Q Consensus 52 i~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g----~~~~vvv~~~~~i~eil~-~~~~~f~~r~ 111 (352)
++||+..- .-....+.++..+||+|..+++- +.-+|-..+++.++.++. -++..+.+++
T Consensus 7 ~v~nlp~~-~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 70 (198)
T 1qm9_A 7 LVSNLNPE-RVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP 70 (198)
T ss_dssp EEECCCSS-SCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCC
T ss_pred EEeCCCcc-cCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeE
Confidence 45666430 11235677888999999988863 334677889999998886 3444455544
No 235
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=25.97 E-value=85 Score=22.24 Aligned_cols=37 Identities=19% Similarity=0.172 Sum_probs=28.5
Q ss_pred HHHHHHHhhcCCeeEEeecCee-EEEeCCHHHHHHHHh
Q 048567 65 VSLHSLSQKYGPIIQLKFGLET-VVVASSAEVAELILK 101 (352)
Q Consensus 65 ~~~~~~~~kYG~i~~i~~g~~~-~vvv~~~~~i~eil~ 101 (352)
.-+.++...||.|.--|+...- .+++++++.+++++.
T Consensus 30 ~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 30 SDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp HHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHH
T ss_pred HHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHH
Confidence 4577889999976555666544 666899999999997
No 236
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=25.64 E-value=1.5e+02 Score=23.34 Aligned_cols=59 Identities=8% Similarity=0.120 Sum_probs=38.3
Q ss_pred CcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhh-CCcccCCCc
Q 048567 51 PLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKT-HDLTFASRP 111 (352)
Q Consensus 51 pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~-~~~~f~~r~ 111 (352)
-++||+..- -....+.++..+||+|..+++-. .=+|-..+++.+..++.. ++..+.+|+
T Consensus 128 l~v~nlp~~--~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 196 (216)
T 2qfj_A 128 IYVASVHQD--LSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY 196 (216)
T ss_dssp EEEECCCTT--CCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSB
T ss_pred EEEeCCCCc--CCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcE
Confidence 355665431 23456788889999998887632 125557899999988874 444454443
No 237
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.55 E-value=59 Score=23.40 Aligned_cols=57 Identities=14% Similarity=0.079 Sum_probs=37.5
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCC---eeEEeec--------CeeEEEeCCHHHHHHHHhhCCcccC
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGP---IIQLKFG--------LETVVVASSAEVAELILKTHDLTFA 108 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~---i~~i~~g--------~~~~vvv~~~~~i~eil~~~~~~f~ 108 (352)
.-++|||..- --...+.++..+||. |..+++- +.-+|-..+++.++.++..++..+.
T Consensus 19 ~l~V~nLp~~--~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~ 86 (118)
T 2db1_A 19 VVKLRGLPWS--CSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMG 86 (118)
T ss_dssp EEEEESCCTT--CCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEET
T ss_pred EEEEeCCCCC--CCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeEC
Confidence 3467887642 234557888899998 6666542 1336668899999999875544333
No 238
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=25.47 E-value=1.7e+02 Score=20.24 Aligned_cols=59 Identities=10% Similarity=0.036 Sum_probs=38.8
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCC---eeEEeec--------CeeEEEeCCHHHHHHHHhhCCcccCCC
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGP---IIQLKFG--------LETVVVASSAEVAELILKTHDLTFASR 110 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~---i~~i~~g--------~~~~vvv~~~~~i~eil~~~~~~f~~r 110 (352)
.-++|||..- --...+.++..+||+ |..+++- +.-+|-..+++.++.++..++..+.+|
T Consensus 13 ~l~V~nLp~~--~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr 82 (107)
T 2lmi_A 13 LIRAQGLPWS--CTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQR 82 (107)
T ss_dssp EEEEECCCSS--CCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSS
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCe
Confidence 4578888642 234557788889887 7666652 134666889999999987554444333
No 239
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=25.04 E-value=1.6e+02 Score=21.61 Aligned_cols=58 Identities=19% Similarity=0.184 Sum_probs=38.8
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCee--EEeec--------CeeEEEeCCHHHHHHHHhhCCcccCCC
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPII--QLKFG--------LETVVVASSAEVAELILKTHDLTFASR 110 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~--~i~~g--------~~~~vvv~~~~~i~eil~~~~~~f~~r 110 (352)
.-++|||..- --...+.++..+| .|. .+++- +.-+|-..+++.++.++......+.+|
T Consensus 44 ~lfVgnLp~~--~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR 111 (126)
T 2hgm_A 44 FVRLRGLPFG--CTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHR 111 (126)
T ss_dssp EEEEECCCTT--CCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTB
T ss_pred EEEEeCCCCC--CCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCE
Confidence 4577887642 2345677888899 566 67653 234677889999999987655445444
No 240
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=24.67 E-value=1e+02 Score=25.25 Aligned_cols=50 Identities=22% Similarity=0.266 Sum_probs=34.6
Q ss_pred CcccccccCCCCCcHHHHHHHhhcC--CeeEEeecC---------eeEEEeCCHHHHHHHHhh
Q 048567 51 PLIGNLNLIGQLPHVSLHSLSQKYG--PIIQLKFGL---------ETVVVASSAEVAELILKT 102 (352)
Q Consensus 51 pi~G~l~~~~~~~~~~~~~~~~kYG--~i~~i~~g~---------~~~vvv~~~~~i~eil~~ 102 (352)
-+||||..- --...+.+++.+|| .|..+++-. .=+|...+.+.++.++..
T Consensus 71 lfVgnL~~~--~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~ 131 (229)
T 3q2s_C 71 LYIGNLTWW--TTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDL 131 (229)
T ss_dssp EEEESCCTT--CCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTT
T ss_pred EEEeCCCCC--CCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 367777532 22456788899999 898887521 136667888888888764
No 241
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=24.56 E-value=1.3e+02 Score=24.02 Aligned_cols=57 Identities=19% Similarity=0.212 Sum_probs=37.7
Q ss_pred CcccccccCCCCCcHHHHHHHhhcCCeeEEeec-----C--eeEEEeCCHHHHHHHHhh-CCcccCC
Q 048567 51 PLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG-----L--ETVVVASSAEVAELILKT-HDLTFAS 109 (352)
Q Consensus 51 pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g-----~--~~~vvv~~~~~i~eil~~-~~~~f~~ 109 (352)
-++||+..- --...+.++..+||+|..+++- . .-+|-..+++.+..++.. ++..+.+
T Consensus 106 l~v~nl~~~--~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g 170 (213)
T 4f02_A 106 IFIKNLDKS--IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND 170 (213)
T ss_dssp EEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred ceECCcccc--cHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 356776532 2345678889999999888752 1 225667899999998865 4433433
No 242
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.22 E-value=2e+02 Score=20.67 Aligned_cols=55 Identities=15% Similarity=0.074 Sum_probs=38.3
Q ss_pred CCCCCCcc--cccccCCCCCcHHHHHHHhhcCCeeEEeecC---eeEEEeCCHHHHHHHHhh
Q 048567 46 GPKPWPLI--GNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---ETVVVASSAEVAELILKT 102 (352)
Q Consensus 46 Gp~~~pi~--G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---~~~vvv~~~~~i~eil~~ 102 (352)
.|...-++ ||+.. .-....+.+...+||.|..+++.. .-+|-..+++.++.++..
T Consensus 23 ~pt~~L~V~Ng~L~~--~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~ 82 (114)
T 2cq2_A 23 YATQSLVVANGGLGN--GVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVT 82 (114)
T ss_dssp SCCSEEEEETCTGGG--TCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCC--CCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 34445677 66753 223456888999999998888642 345667899988888865
No 243
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=23.71 E-value=2.1e+02 Score=21.14 Aligned_cols=57 Identities=18% Similarity=0.173 Sum_probs=37.0
Q ss_pred CcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhh-CCcccCC
Q 048567 51 PLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKT-HDLTFAS 109 (352)
Q Consensus 51 pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~-~~~~f~~ 109 (352)
-++||+.. .-....+.++..+||+|..+++.. .-+|-..+++.+..++.. ++..+.+
T Consensus 91 l~v~nl~~--~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 157 (167)
T 1fxl_A 91 LYVSGLPK--TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 157 (167)
T ss_dssp EEEESCCT--TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred EEECCCCC--cCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCC
Confidence 46677653 123456788899999998877521 124557899999988874 3334443
No 244
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=23.50 E-value=1.6e+02 Score=22.15 Aligned_cols=51 Identities=14% Similarity=0.207 Sum_probs=34.8
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecCe--------eEEEeCCHHHHHHHHhh
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGLE--------TVVVASSAEVAELILKT 102 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~~--------~~vvv~~~~~i~eil~~ 102 (352)
--++||+.. .-....+.++..+||+|..+++-.. -+|-..+++.+..++..
T Consensus 97 ~l~v~nl~~--~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 97 KLFIGMISK--KCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp EEEEESCCT--TCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred eEEEcCCCC--cCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHH
Confidence 345666643 1234567888899999988876321 35667899999988864
No 245
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.44 E-value=75 Score=22.93 Aligned_cols=58 Identities=12% Similarity=0.091 Sum_probs=35.4
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeE---Eee---c---CeeEEEeCCHHHHHHHHhhCCcccCC
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQ---LKF---G---LETVVVASSAEVAELILKTHDLTFAS 109 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~---i~~---g---~~~~vvv~~~~~i~eil~~~~~~f~~ 109 (352)
.-++|||..- --...+.++..+||+|.. +.. | +.-+|-..+++.++.++..++..+.+
T Consensus 27 ~l~V~nLp~~--~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~g 93 (124)
T 1wel_A 27 CVYLKGLPFE--AENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGN 93 (124)
T ss_dssp EEEEECCCTT--CCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTT
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECC
Confidence 4577888642 234557788899998632 221 1 12356678999998888744433333
No 246
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=23.31 E-value=60 Score=21.95 Aligned_cols=58 Identities=17% Similarity=0.104 Sum_probs=35.4
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEee------c---CeeEEEeCCHHHHHHHHhh-CCcccCC
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKF------G---LETVVVASSAEVAELILKT-HDLTFAS 109 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~------g---~~~~vvv~~~~~i~eil~~-~~~~f~~ 109 (352)
--++||++. .-....+.++..+||+|..+++ | +.-+|-..+++.++.++.. ++..+.+
T Consensus 17 ~l~V~nlp~--~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 84 (95)
T 2ek1_A 17 VIKVQNMPF--TVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS 84 (95)
T ss_dssp EEEEECCCT--TCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred EEEEeCCCC--CCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 346777753 2234557788899998743332 1 1235557899999988864 4434433
No 247
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=23.21 E-value=1.7e+02 Score=23.34 Aligned_cols=60 Identities=10% Similarity=0.098 Sum_probs=40.9
Q ss_pred CCcccccc-cCCCCCcHHHHHHHhhcCCeeEEeec----CeeEEEeCCHHHHHHHHhh-CCcccCCCc
Q 048567 50 WPLIGNLN-LIGQLPHVSLHSLSQKYGPIIQLKFG----LETVVVASSAEVAELILKT-HDLTFASRP 111 (352)
Q Consensus 50 ~pi~G~l~-~~~~~~~~~~~~~~~kYG~i~~i~~g----~~~~vvv~~~~~i~eil~~-~~~~f~~r~ 111 (352)
.-++|||. .- --...+.++..+||+|.++++- +.-+|-..+++.+..++.. ++..+.+|+
T Consensus 6 ~l~V~nL~~~~--~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 71 (205)
T 3tyt_A 6 VLMVYGLDQSK--MNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQK 71 (205)
T ss_dssp EEEEECCCTTT--CCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEeCCCccc--CCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCce
Confidence 45778886 31 1234678889999999998863 3456778899999888763 444444443
No 248
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.96 E-value=1.5e+02 Score=21.05 Aligned_cols=58 Identities=9% Similarity=0.025 Sum_probs=38.2
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeec--------CeeEEEeCCHHHHHHHHhhCCcccCCC
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFG--------LETVVVASSAEVAELILKTHDLTFASR 110 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g--------~~~~vvv~~~~~i~eil~~~~~~f~~r 110 (352)
.-++|||..- --...+.++..+| .|..+++. +.-+|-..+++.++.++..++..+.+|
T Consensus 18 ~v~V~nLp~~--~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr 83 (109)
T 2dnn_A 18 YVSVHGMPFS--AMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQR 83 (109)
T ss_dssp EEEEECCCSS--CCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTE
T ss_pred EEEEeCCCCC--CCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCe
Confidence 3467777542 2345577888889 67777752 244677889999999986555444443
No 249
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=22.82 E-value=1.9e+02 Score=21.53 Aligned_cols=51 Identities=22% Similarity=0.206 Sum_probs=34.8
Q ss_pred CCcccccccCCCCCcHHHHHHHhhcCCeeEEeecC---------eeEEEeCCHHHHHHHHhh
Q 048567 50 WPLIGNLNLIGQLPHVSLHSLSQKYGPIIQLKFGL---------ETVVVASSAEVAELILKT 102 (352)
Q Consensus 50 ~pi~G~l~~~~~~~~~~~~~~~~kYG~i~~i~~g~---------~~~vvv~~~~~i~eil~~ 102 (352)
--++||+.. .-....+.++..+||+|..+++-. .-+|-..+++.+..++..
T Consensus 91 ~l~v~nl~~--~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 150 (168)
T 1b7f_A 91 NLYVTNLPR--TITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA 150 (168)
T ss_dssp EEEEESCCT--TCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CEEEeCCCC--CCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 346677653 223456788889999998877532 125557899999988874
No 250
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=21.12 E-value=1.1e+02 Score=25.67 Aligned_cols=61 Identities=20% Similarity=0.251 Sum_probs=39.1
Q ss_pred CCcccccccC-C-CCCcHHHHHHHhhcCCeeEEeec------CeeEEEeCCHHHHHHHHhh-CCcccCCC
Q 048567 50 WPLIGNLNLI-G-QLPHVSLHSLSQKYGPIIQLKFG------LETVVVASSAEVAELILKT-HDLTFASR 110 (352)
Q Consensus 50 ~pi~G~l~~~-~-~~~~~~~~~~~~kYG~i~~i~~g------~~~~vvv~~~~~i~eil~~-~~~~f~~r 110 (352)
--++|||..- . ..+...+.++..+||+|..+++- +.-+|-..+++.++.++.. ++..+.+|
T Consensus 11 ~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 11 TIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 4578888643 1 12223366888999999888852 2345667899999988854 33344443
Done!