BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048569
(394 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6GMF8|RHDF1_DANRE Inactive rhomboid protein 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1
Length = 857
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 108/210 (51%), Gaps = 26/210 (12%)
Query: 133 WRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQN 192
+RL+ +LHAG +H ++++ + + LEK G +RI IIYI S G+LA+A+F+
Sbjct: 656 YRLWLSLFLHAGILHCLVSVCFQMTILRDLEKLAGWLRISIIYILSGITGNLASAIFLPY 715
Query: 193 SPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSSI 252
V +GS FG+L + LI++W + A L V FA GLLP+IDNF+ I
Sbjct: 716 RAEVGPAGSQFGILACLFVELIQSWQILAQPWRAFTKLLCVVLFLFAFGLLPWIDNFAHI 775
Query: 253 GGFISGFLLGFTLLFTPQTRIVAHSKAGIFEHNVKSSINF-KLKLDRPIMRSVSLLLFVL 311
GFISGF L F L I+F +L + R + +++F++
Sbjct: 776 SGFISGFFLSFAFL---------------------PYISFGRLDMYR---KRCQIIIFLV 811
Query: 312 VILGFLAAVLQGLNISQ-YCKWCKYIDCVP 340
V LG A ++ + C+WC+ + C+P
Sbjct: 812 VFLGLFAGLVVLFYVHPIKCEWCELLTCIP 841
>sp|Q695T8|RHBL4_TOXGO Rhomboid-like protease 4 OS=Toxoplasma gondii GN=ROM4 PE=2 SV=1
Length = 641
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 88/159 (55%), Gaps = 1/159 (0%)
Query: 110 PSASTLDQMGALRQTFLKEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPV 169
P+A L +G L +++EY T+RLFT ++H G++H+++NL C + + +E ++G +
Sbjct: 320 PNARVLRHLGGLETNYIREYSETFRLFTSMYMHGGWLHILINLSCQIQILWIIEPDWGFL 379
Query: 170 RIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVL 229
R +++ G+L +A+ S V +SGS++ LLGA++ + W + I++
Sbjct: 380 RTTLLFFLGGISGNLLSAVADPCSITVGSSGSMYALLGALIPYCVEYWK-SIPRPGCILV 438
Query: 230 LFFVSTINFAIGLLPYIDNFSSIGGFISGFLLGFTLLFT 268
V I G+ + DN++ +GG + G L GF + T
Sbjct: 439 FMIVVIIGILTGMAGFTDNYAHMGGALGGILWGFASITT 477
>sp|Q96CC6|RHDF1_HUMAN Inactive rhomboid protein 1 OS=Homo sapiens GN=RHBDF1 PE=1 SV=2
Length = 855
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 104/210 (49%), Gaps = 26/210 (12%)
Query: 133 WRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQN 192
+RL+ +LHAG +H ++++ + V LEK G RI IIY+ S G+LA+A+F+
Sbjct: 654 YRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPY 713
Query: 193 SPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSSI 252
V +GS FG+L + L ++W + A L V F GLLP+IDNF+ I
Sbjct: 714 RAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHI 773
Query: 253 GGFISGFLLGFTLLFTPQTRIVAHSKAGIFEHNVKSSINF-KLKLDRPIMRSVSLLLFVL 311
GFISG L F L I+F K L R + +++F +
Sbjct: 774 SGFISGLFLSFAFL---------------------PYISFGKFDLYR---KRCQIIIFQV 809
Query: 312 VILGFLAAVLQGLNISQ-YCKWCKYIDCVP 340
V LG LA ++ + C+WC+++ C+P
Sbjct: 810 VFLGLLAGLVVLFYVYPVRCEWCEFLTCIP 839
>sp|B0VX73|RHDF1_CALJA Inactive rhomboid protein 1 OS=Callithrix jacchus GN=RHBDF1 PE=3
SV=1
Length = 855
Score = 92.0 bits (227), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 104/210 (49%), Gaps = 26/210 (12%)
Query: 133 WRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQN 192
+RL+ +LHAG +H ++++ + V LEK G RI IIY+ S G+LA+A+F+
Sbjct: 654 YRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPY 713
Query: 193 SPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSSI 252
V +GS FG+L + L ++W + A L V F GLLP+IDNF+ I
Sbjct: 714 RAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHI 773
Query: 253 GGFISGFLLGFTLLFTPQTRIVAHSKAGIFEHNVKSSINF-KLKLDRPIMRSVSLLLFVL 311
GFISG L F L I+F K L R + +++F +
Sbjct: 774 SGFISGLFLSFAFL---------------------PYISFGKFDLYR---KRCQIIVFQV 809
Query: 312 VILGFLAAVLQGLNISQ-YCKWCKYIDCVP 340
V LG LA ++ + C+WC+++ C+P
Sbjct: 810 VFLGLLAGLVVLFYVYPVRCEWCEFLTCIP 839
>sp|Q6PIX5|RHDF1_MOUSE Inactive rhomboid protein 1 OS=Mus musculus GN=Rhbdf1 PE=1 SV=2
Length = 856
Score = 91.7 bits (226), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 104/210 (49%), Gaps = 26/210 (12%)
Query: 133 WRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQN 192
+RL+ +LHAG +H ++++ + V LEK G RI IIY+ S G+LA+A+F+
Sbjct: 655 YRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGITGNLASAIFLPY 714
Query: 193 SPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSSI 252
V +GS FG+L + L ++W + A L V FA GLLP+IDNF+ I
Sbjct: 715 RAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFAFGLLPWIDNFAHI 774
Query: 253 GGFISGFLLGFTLLFTPQTRIVAHSKAGIFEHNVKSSINF-KLKLDRPIMRSVSLLLFVL 311
GF+SG L F L I+F K L R + +++F +
Sbjct: 775 SGFVSGLFLSFAFL---------------------PYISFGKFDLYR---KRCQIIIFQV 810
Query: 312 VILGFLAAVLQGLNISQ-YCKWCKYIDCVP 340
V LG LA ++ C+WC+++ C+P
Sbjct: 811 VFLGLLAGLVVLFYFYPVRCEWCEFLTCIP 840
>sp|Q499S9|RHDF1_RAT Inactive rhomboid protein 1 OS=Rattus norvegicus GN=Rhbdf1 PE=2
SV=1
Length = 856
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 75/134 (55%)
Query: 133 WRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQN 192
+RL+ +LHAG +H ++++ + V LEK G RI IIY+ S G+LA+A+F+
Sbjct: 655 YRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPY 714
Query: 193 SPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSSI 252
V +GS FG+L + L ++W + A L V FA GLLP+IDNF+ I
Sbjct: 715 RAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFAFGLLPWIDNFAHI 774
Query: 253 GGFISGFLLGFTLL 266
GF+SG L F L
Sbjct: 775 SGFVSGLFLSFAFL 788
>sp|A7YWH9|RHDF1_BOVIN Inactive rhomboid protein 1 OS=Bos taurus GN=RHBDF1 PE=2 SV=1
Length = 856
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 103/210 (49%), Gaps = 26/210 (12%)
Query: 133 WRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQN 192
+RL+ +LHAG +H ++++ + V LEK G RI IIY+ S G+LA+A+F+
Sbjct: 655 YRLWLSLFLHAGVLHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPY 714
Query: 193 SPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSSI 252
V +GS FG+L + L ++W + A L V F GLLP+IDNF+ I
Sbjct: 715 RAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHI 774
Query: 253 GGFISGFLLGFTLLFTPQTRIVAHSKAGIFEHNVKSSINF-KLKLDRPIMRSVSLLLFVL 311
GFISG L F L I+F K L R + +++F L
Sbjct: 775 SGFISGLFLSFAFL---------------------PYISFGKFDLYR---KRCQIIVFQL 810
Query: 312 VILGFLAAVLQGLNISQ-YCKWCKYIDCVP 340
V LG LA ++ C+WC+++ C+P
Sbjct: 811 VFLGLLAGLVVLFYFYPVRCEWCEFLTCIP 840
>sp|A9L8T6|RHDF1_PAPAN Inactive rhomboid protein 1 OS=Papio anubis GN=RHBDF1 PE=3 SV=1
Length = 855
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 103/210 (49%), Gaps = 26/210 (12%)
Query: 133 WRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQN 192
+RL+ +LHAG +H ++++ + V LEK G RI IIY+ S G+LA+A+F+
Sbjct: 654 YRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPY 713
Query: 193 SPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSSI 252
V +GS FG+L + L ++W + A L V F GLLP+IDNF+ I
Sbjct: 714 RAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHI 773
Query: 253 GGFISGFLLGFTLLFTPQTRIVAHSKAGIFEHNVKSSINF-KLKLDRPIMRSVSLLLFVL 311
GFISG L F L I+F K L R + +++F +
Sbjct: 774 SGFISGLFLSFAFL---------------------PYISFGKFDLYR---KRCQIIIFQV 809
Query: 312 VILGFLAAVLQGLNISQ-YCKWCKYIDCVP 340
V LG LA ++ C+WC+++ C+P
Sbjct: 810 VFLGLLAGLVVLFYFYPVRCEWCEFLTCIP 839
>sp|B1MT31|RHDF1_CALMO Inactive rhomboid protein 1 OS=Callicebus moloch GN=RHBDF1 PE=3
SV=1
Length = 855
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 103/210 (49%), Gaps = 26/210 (12%)
Query: 133 WRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQN 192
+RL+ +LHAG +H ++++ + V LEK G RI IIY+ S G+LA+A+F+
Sbjct: 654 YRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPY 713
Query: 193 SPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSSI 252
V +GS FG+L + L ++W + A L V F GLLP+IDNF+ I
Sbjct: 714 RAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHI 773
Query: 253 GGFISGFLLGFTLLFTPQTRIVAHSKAGIFEHNVKSSINF-KLKLDRPIMRSVSLLLFVL 311
GFISG L F L I+F K L R + +++F +
Sbjct: 774 SGFISGLFLSFAFL---------------------PYISFGKFDLYR---KRCQIIVFQV 809
Query: 312 VILGFLAAVLQGLNISQ-YCKWCKYIDCVP 340
V LG LA ++ C+WC+++ C+P
Sbjct: 810 VFLGLLAGLVVLFYFYPVRCEWCEFLTCIP 839
>sp|C8VCL5|Y0929_EMENI Uncharacterized rhomboid protein AN10929 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=AN10929 PE=3 SV=1
Length = 503
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 110/250 (44%), Gaps = 32/250 (12%)
Query: 127 KEYHHTWRLFTCP-WLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLA 185
K W F P +LH+GF+H+ NL + +G +E+ G R G++Y+ S G +
Sbjct: 245 KPAPDQWFRFIIPMFLHSGFVHIGFNLLVQMTMGADMERMIGWWRYGLVYLSSGIWGFVL 304
Query: 186 AALFVQNSPVVCA-SGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLP 244
+ C SG+LFG+L + L+ WN + + ++++ ++F +GLLP
Sbjct: 305 GGNYAGQGEASCGCSGALFGILALFVLDLLYGWNDRQNPWVELIIMVLGIAVSFVLGLLP 364
Query: 245 YIDNFSSIGGFISGFLLGFTLLFTP---QTRI-------------VAHSKAGIFEHNVKS 288
+DNFS +GGF G LG ++ +P + RI VA A ++ +
Sbjct: 365 GLDNFSHLGGFTMGLALGLCVMRSPNALRERIGLARSPYVAMSGGVAAENADPDQNKTST 424
Query: 289 SINF-KLKLDRP----IMRSVSLLLFVLVILGFLAAVLQG-----LNISQY----CKWCK 334
N L P R + LV LG L AVL G +N +Y C WC
Sbjct: 425 GSNIGGLGKFNPKGFFAGRKPLWWAWWLVRLGALVAVLIGFILLIVNFYKYPSSNCSWCY 484
Query: 335 YIDCVPSKRW 344
C+P W
Sbjct: 485 RFSCLPVNGW 494
>sp|Q00M95|RHDF2_CANFA Inactive rhomboid protein 2 OS=Canis familiaris GN=RHBDF2 PE=2 SV=1
Length = 827
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 75/134 (55%)
Query: 133 WRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQN 192
+RL+ +LHAG +H ++++ + + LEK G RI II+I S G+LA+A+F+
Sbjct: 626 YRLWLSLFLHAGVVHCLVSVVFQMTILRDLEKLAGWHRIAIIFILSGITGNLASAIFLPY 685
Query: 193 SPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSSI 252
V +GS FGLL + L ++W + A + L + F GLLP+IDN + I
Sbjct: 686 RAEVGPAGSQFGLLACLFVELFQSWQLLERPWKAFLNLSAIVLFLFICGLLPWIDNIAHI 745
Query: 253 GGFISGFLLGFTLL 266
GF+SG LL F L
Sbjct: 746 FGFLSGLLLAFAFL 759
>sp|Q6PJF5|RHDF2_HUMAN Inactive rhomboid protein 2 OS=Homo sapiens GN=RHBDF2 PE=1 SV=2
Length = 856
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 75/134 (55%)
Query: 133 WRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQN 192
+RL+ +LHAG +H ++++ + + LEK G RI II+I S G+LA+A+F+
Sbjct: 655 YRLWLSLFLHAGVVHCLVSVVFQMTILRDLEKLAGWHRIAIIFILSGITGNLASAIFLPY 714
Query: 193 SPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSSI 252
V +GS FGLL + L ++W + A + L + F GLLP+IDN + I
Sbjct: 715 RAEVGPAGSQFGLLACLFVELFQSWPLLERPWKAFLNLSAIVLFLFICGLLPWIDNIAHI 774
Query: 253 GGFISGFLLGFTLL 266
GF+SG LL F L
Sbjct: 775 FGFLSGLLLAFAFL 788
>sp|A0JPA1|RHDF2_XENTR Inactive rhomboid protein 2 OS=Xenopus tropicalis GN=rhbdf2 PE=2
SV=1
Length = 826
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 83/153 (54%), Gaps = 1/153 (0%)
Query: 115 LDQMGALRQTFLKEYHHT-WRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGI 173
LD++ L EY +RL+ +LHAG IH +++ + V LEK G +RI I
Sbjct: 606 LDEVCGLLPFLNPEYPDQFYRLWLSLFLHAGVIHCCVSVVFQMTVLRDLEKLAGWLRISI 665
Query: 174 IYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFV 233
IYI S G+LA+ALF+ V +GS FGLL + L ++W + A + L +
Sbjct: 666 IYILSGITGNLASALFLPYRAEVGPAGSQFGLLACLFVELFQSWQILAKPWKAFLKLLGI 725
Query: 234 STINFAIGLLPYIDNFSSIGGFISGFLLGFTLL 266
F GLLP+IDN + I GF+SG LL F+ L
Sbjct: 726 VLFLFLFGLLPWIDNIAHIFGFLSGLLLSFSFL 758
>sp|Q80WQ6|RHDF2_MOUSE Inactive rhomboid protein 2 OS=Mus musculus GN=Rhbdf2 PE=1 SV=1
Length = 827
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 74/134 (55%)
Query: 133 WRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQN 192
+R++ +LHAG +H ++++ + + LEK G RI II+I S G+LA+A+F+
Sbjct: 626 YRIWLSLFLHAGIVHCLVSVVFQMTILRDLEKLAGWHRISIIFILSGITGNLASAIFLPY 685
Query: 193 SPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSSI 252
V +GS FGLL + L ++W + A L + F GLLP+IDN + I
Sbjct: 686 RAEVGPAGSQFGLLACLFVELFQSWQLLERPWKAFFNLSAIVLFLFICGLLPWIDNIAHI 745
Query: 253 GGFISGFLLGFTLL 266
GF+SG LL F L
Sbjct: 746 FGFLSGMLLAFAFL 759
>sp|Q76NQ1|RHDF1_DROME Inactive rhomboid protein 1 OS=Drosophila melanogaster GN=rho-5 PE=2
SV=1
Length = 1429
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 73/136 (53%), Gaps = 2/136 (1%)
Query: 133 WRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQN 192
+RL T +HAG +HL + L L LE+ G VR I+YI S F G+L +A+ V +
Sbjct: 1094 YRLLTSLCMHAGILHLAITLIFQHLFLADLERLIGTVRTAIVYIMSGFAGNLTSAILVPH 1153
Query: 193 SPVVCASGSLFGLLGAMLSGLI-RNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNF-S 250
P V S SL G++ ++++ L+ +W + A+ L + ++ IG LPY NF
Sbjct: 1154 RPEVGPSASLSGVVASLIALLVWMHWKYLHKPHIALFKLLLLCSVLVGIGTLPYQLNFLG 1213
Query: 251 SIGGFISGFLLGFTLL 266
+ G I G LL +L+
Sbjct: 1214 LLAGVICGCLLTMSLV 1229
>sp|P58872|RHBL3_HUMAN Rhomboid-related protein 3 OS=Homo sapiens GN=RHBDL3 PE=2 SV=1
Length = 404
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 13/165 (7%)
Query: 131 HTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFV 190
WR T ++HAG HL LN+ +LVG+ LE G RIG++Y+ GSLA ++
Sbjct: 210 QVWRYLTYIFMHAGIEHLGLNVVLQLLVGVPLEMVHGATRIGLVYVAGVVAGSLAVSVAD 269
Query: 191 QNSPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFA----AIVLLFFVSTINFAIGLL--- 243
+PVV +SG ++ L+ A L+ ++ NW+ +F A+ L+ A+ L
Sbjct: 270 MTAPVVGSSGGVYALVSAHLANIVMNWSGMKCQFKLLRMAVALICMSMEFGRAVWLRFHP 329
Query: 244 ------PYIDNFSSIGGFISGFLLGFTLLFTPQTRIVAHSKAGIF 282
P+ + +GG G LG +L + R+ S IF
Sbjct: 330 SAYPPCPHPSFVAHLGGVAVGITLGVVVLRNYEQRLQDQSLWWIF 374
>sp|P58873|RHBL3_MOUSE Rhomboid-related protein 3 OS=Mus musculus GN=Rhbdl3 PE=2 SV=1
Length = 404
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 13/165 (7%)
Query: 131 HTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFV 190
WR T ++HAG L LN+ +LVG+ LE G RIG++Y+ GSLA ++
Sbjct: 210 QAWRYVTYIFMHAGVEQLGLNVALQLLVGVPLEMVHGATRIGLVYVAGVVAGSLAVSVAD 269
Query: 191 QNSPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFA----AIVLLFFVSTINFAIGLL--- 243
+PVV +SG ++ L+ A L+ ++ NW+ +F A+ L+ A+ L
Sbjct: 270 MTAPVVGSSGGVYALVSAHLANIVMNWSGMKCQFKLLRMAVALICMSMEFGRAVWLRFHP 329
Query: 244 ------PYIDNFSSIGGFISGFLLGFTLLFTPQTRIVAHSKAGIF 282
P+ + +GG G LG +L + R+ S IF
Sbjct: 330 SAYPPCPHPSFVAHLGGVAVGITLGVVVLRNYEQRLQDQSLWWIF 374
>sp|P54493|GLUP_BACSU Rhomboid protease GluP OS=Bacillus subtilis (strain 168) GN=gluP
PE=1 SV=2
Length = 507
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 2/133 (1%)
Query: 133 WRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQN 192
WRL T LH G HL N + VG +E+ +G R +IY+ + GS+A+ +F
Sbjct: 223 WRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLLIYLAAGITGSIASFVF-SP 281
Query: 193 SPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSSI 252
P ASG++FG LGA+L + N + +++ + + F + IDN I
Sbjct: 282 YPSAGASGAIFGCLGALLYVALSNRKMFLRTIGTNIIVIIIINLGFGFA-VSNIDNSGHI 340
Query: 253 GGFISGFLLGFTL 265
GG I GF L
Sbjct: 341 GGLIGGFFAAAAL 353
>sp|Q6IUY1|RHBL3_TOXGO Rhomboid-like protease 3 OS=Toxoplasma gondii GN=ROM3 PE=2 SV=1
Length = 263
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 17/161 (10%)
Query: 110 PSASTLDQMGALRQTFLKEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPV 169
P+ TL +GA + WR+ T +LHA +HL+LNL I+ + + LE+ +G
Sbjct: 62 PNERTLMLLGAAYAPAFSNFQ-LWRVVTPLFLHATILHLVLNLVFILHISLRLEERYGTK 120
Query: 170 RIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAI-- 227
+ + Y SA VG+L + L + V AS + FG++G M + + W +++ I
Sbjct: 121 KFLVTYFLSAIVGNLLSMLMQPWALSVGASTAGFGIIGGMAAEVSVVWCKLSEELKRIYS 180
Query: 228 -------VLLFFVSTINFAIGLLPYIDNFSSIGGFISGFLL 261
VL++F+S +D F +GGF++G L
Sbjct: 181 MDICILAVLIYFLS-------FGRTVDTFGHLGGFLAGVAL 214
>sp|Q19821|ROM1_CAEEL Rhomboid-related protein 1 OS=Caenorhabditis elegans GN=rom-1 PE=3
SV=2
Length = 356
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 20/169 (11%)
Query: 132 TWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQ 191
WR + +LHAG HL+ N+ +LVGI LE RIG IY+ + GSL
Sbjct: 166 AWRFTSYMFLHAGLNHLLGNVIIQLLVGIPLEVAHKIWRIGPIYLLAVTSGSLLQYAIDP 225
Query: 192 NSPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINF--AIGLLPY---- 245
NS +V AS ++ L+ A ++ +I NW+ ++ +++LF ++F AI Y
Sbjct: 226 NSLLVGASAGVYALIFAHVANVILNWHEMPLRWIRVLVLFVFIFLDFGGAIHRRFYTNDC 285
Query: 246 --IDNFSSIGGFISGFLLGFTLLFTPQTRIVAHSKAGIFEHNVKSSINF 292
+ + + I G ++G G+ +L+ + EH ++ I +
Sbjct: 286 DSVSHLAHIAGAVTGLFFGYVVLYN------------VVEHRIEKIIRY 322
>sp|P20350|RHOM_DROME Protein rhomboid OS=Drosophila melanogaster GN=rho PE=1 SV=2
Length = 355
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 133 WRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQN 192
WR F+ +LHA + HL N+ + GI LE G RIG+IY+ F GSL ++
Sbjct: 151 WRFFSYMFLHANWFHLGFNIVIQLFFGIPLEVMHGTARIGVIYMAGVFAGSLGTSVVDSE 210
Query: 193 SPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAI--VLLFFVSTINFAI---------- 240
+V ASG ++ LL A L+ + N+ + V++F + +A+
Sbjct: 211 VFLVGASGGVYALLAAHLANITLNYAHMKSASTQLGSVVIFVSCDLGYALYTQYFDGSAF 270
Query: 241 GLLPYIDNFSSIGGFISGFLLGFTLL 266
P + + + G ++G +GF +L
Sbjct: 271 AKGPQVSYIAHLTGALAGLTIGFLVL 296
>sp|A2AGA4|RHBL2_MOUSE Rhomboid-related protein 2 OS=Mus musculus GN=Rhbdl2 PE=1 SV=1
Length = 302
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 11/150 (7%)
Query: 127 KEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAA 186
++ WR + +HAG H++ NL +++GI LE +R+G++Y+ GSLA+
Sbjct: 114 EKREEAWRFISYMLVHAGVQHIVGNLLMQIVLGIPLEMVHKGLRVGLVYLAGVLAGSLAS 173
Query: 187 ALFVQNSPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYI 246
++F +V ASG ++ L+G +I N+ F + LL + + +G Y
Sbjct: 174 SIFDPLKSLVGASGGVYALMGGYFMNVIVNFREMIPAFGIVRLLVIILIVASDMGFALYR 233
Query: 247 DNF-----------SSIGGFISGFLLGFTL 265
F + I G +G +G+T+
Sbjct: 234 RFFVPANGSPVSFAAHIAGGFAGMSIGYTV 263
>sp|Q695T9|RHBL2_TOXGO Rhomboid-like protease 2 OS=Toxoplasma gondii GN=ROM2 PE=2 SV=1
Length = 283
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 10/169 (5%)
Query: 102 ISENPLLGPSASTLDQMGALRQTFLKEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIH 161
++ N +L P+ TL GA ++ WRL +LH H+++NL + +G+
Sbjct: 81 LAPNEILAPTPQTLVMFGANIPELIR-VGEIWRLICPLFLHLNLFHILMNLWVQIRIGLT 139
Query: 162 LEKEFG-PVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRNWNFY 220
+E+++G + + + + ++AA+ AS ++F L+G L+ L W+
Sbjct: 140 MEEKYGWKMLLAVYFGVGVLANMISAAVLFCGQMKAGASTAVFALIGVQLAELALIWHAI 199
Query: 221 TDKFAAIV----LLFFVSTINFAIGLLPYIDNFSSIGGFISGFLLGFTL 265
D+ +AI+ LFFV +F ++D+ IGG + GF G L
Sbjct: 200 QDRNSAIISVCICLFFVFVSSFG----SHMDSVGHIGGLVMGFAAGIWL 244
>sp|Q6GV23|RHBL5_TOXGO Rhomboid-like protease 5 OS=Toxoplasma gondii GN=ROM5 PE=1 SV=1
Length = 841
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Query: 77 AVNDCWRNSHGNCALKMLGRLSFQPISENPLLGPSASTLDQMGALRQTFLKEYHHTWRLF 136
A +D W + L GR P + P+ +GAL ++ Y +R+
Sbjct: 417 ASDDGWPSD-----LVQRGRAQRSPAA---FDSPNPRVFSSLGALDTNKVRNYGEMFRVV 468
Query: 137 TCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVV 196
+LH G++HL+LN+ C LE +G +R ++I GSL +A+ + V
Sbjct: 469 WGMFLHGGWMHLLLNVSCQAQTLWILEPAWGFLRTLSLWIVGGVSGSLLSAVANPCTVTV 528
Query: 197 CASGSLFGLLGAMLSGLIRNWN 218
+SG+ +GLLGA++ I W+
Sbjct: 529 GSSGAFYGLLGALVPFSIEYWD 550
>sp|O75783|RHBL1_HUMAN Rhomboid-related protein 1 OS=Homo sapiens GN=RHBDL1 PE=2 SV=1
Length = 438
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 13/156 (8%)
Query: 131 HTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFV 190
WR T ++H G L N +++G+ LE G +RI ++Y+ GSL ++
Sbjct: 244 RAWRFLTYMFMHVGLEQLGFNALLQLMIGVPLEMVHGLLRISLLYLAGVLAGSLTVSITD 303
Query: 191 QNSPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFA----AIVLLFFVSTINFAIGLL--- 243
+PVV SG ++ L A L+ ++ NW + + L+ S + A+ L
Sbjct: 304 MRAPVVGGSGGVYALCSAHLANVVMNWAGMRCPYKLLRMVLALVCMSSEVGRAVWLRFSP 363
Query: 244 ------PYIDNFSSIGGFISGFLLGFTLLFTPQTRI 273
P + + G + G +G T+L + + R+
Sbjct: 364 PLPASGPQPSFMAHLAGAVVGVSMGLTILRSYEERL 399
>sp|Q8VC82|RHBL1_MOUSE Rhomboid-related protein 1 OS=Mus musculus GN=Rhbdl1 PE=2 SV=1
Length = 373
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 13/156 (8%)
Query: 131 HTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFV 190
WR T ++H G L N +++G+ LE G +RI ++Y+ GSL ++
Sbjct: 179 RAWRFLTYMFMHVGLEQLGFNALLQLMIGVPLEMVHGVLRISLLYLAGVLAGSLTVSITD 238
Query: 191 QNSPVVCASGSLFGLLGAMLSGLIRNWNF----YTDKFAAIVLLFFVSTINFAIGLL--- 243
+PVV SG ++ L A L+ ++ NW Y + L+ S + A+ L
Sbjct: 239 MRAPVVGGSGGVYALCSAHLANVVMNWAGMRCPYKLLRMVLALVCMSSEVGRAVWLRFSP 298
Query: 244 ------PYIDNFSSIGGFISGFLLGFTLLFTPQTRI 273
P + + G + G +G T+L + + R+
Sbjct: 299 PLPASGPQPSFMAHLAGAVVGVSMGLTILRSYEERL 334
>sp|Q9NX52|RHBL2_HUMAN Rhomboid-related protein 2 OS=Homo sapiens GN=RHBDL2 PE=1 SV=2
Length = 303
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 114 TLDQMGALRQTFL---KEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVR 170
TLD G L F+ ++ WR + +HAG H++ NL +++GI LE +R
Sbjct: 100 TLDT-GILESPFIYSPEKREEAWRFISYMLVHAGVQHILGNLCMQLVLGIPLEMVHKGLR 158
Query: 171 IGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRNWN 218
+G++Y+ GSLA+++F +V ASG ++ L+G ++ N+
Sbjct: 159 VGLVYLAGVIAGSLASSIFDPLRYLVGASGGVYALMGGYFMNVLVNFQ 206
>sp|P96617|YDCA_BACSU Putative rhomboid protease YdcA OS=Bacillus subtilis (strain 168)
GN=ydcA PE=3 SV=1
Length = 199
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 65/137 (47%), Gaps = 14/137 (10%)
Query: 133 WRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQN 192
WRL T LHAGF HL+ N I L LE+ G R ++Y S +G++ +
Sbjct: 59 WRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGTYV---T 115
Query: 193 SPV----VCASGSLFGLLGAML-SGLIRNWNFYTDKFAAIVLLF----FVSTINFAIGLL 243
P+ V ASG++FGL G L L RN + I+ L +S IN I ++
Sbjct: 116 EPLDYVHVGASGAIFGLFGVYLFMVLFRNELIGQEHSKMIITLLAFAVLMSFINSNINMM 175
Query: 244 PYIDNFSSIGGFISGFL 260
++ F GGF+ FL
Sbjct: 176 AHL--FGLCGGFLLSFL 190
>sp|Q695U0|RHBL1_TOXGO Rhomboid-like protease 1 OS=Toxoplasma gondii GN=ROM1 PE=2 SV=1
Length = 293
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 12/167 (7%)
Query: 103 SENPLLGPSASTLDQMGALRQTFLKEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHL 162
+E PL+ P+A+ L GA +K+ WRL +LHA F H+ N+ + +G +
Sbjct: 82 TELPLI-PAANILVHFGANYPPLIKQ-GQVWRLLLPVFLHANFFHVFFNVFFQLRMGFTI 139
Query: 163 EKEFGPVRIGIIYIFSAFVGS-LAAALFVQNSPVVCASGSLFGLLGAMLSGLIRNWNFYT 221
E+ +G ++ +Y SA G+ L+A F NS V AS + FGL+G + + W+
Sbjct: 140 ERRYGLLKFTGLYFASAIYGNLLSATAFFCNSLKVGASTAGFGLIGIQICEMALTWHRMR 199
Query: 222 DK------FAAIVLLFFVSTINFAIGLLPYIDNFSSIGGFISGFLLG 262
+ + VLL + G ID +GG + GF +G
Sbjct: 200 HRDRMLTNMVSFVLLMVLLMFTLNGG---SIDQMGHLGGLLCGFSIG 243
>sp|O88779|RHBL1_RAT Rhomboid-related protein 1 (Fragment) OS=Rattus norvegicus
GN=Rhbdl1 PE=2 SV=1
Length = 164
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 13/146 (8%)
Query: 141 LHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASG 200
+H G L N +++G+ LE G +RI ++Y+ GSL ++ +PVV SG
Sbjct: 2 MHVGLEQLGFNALLQLMIGVPLEMVHGVLRISLLYLAGVLAGSLTVSITDMRAPVVGGSG 61
Query: 201 SLFGLLGAMLSGLIRNWNF----YTDKFAAIVLLFFVSTINFAIGLL---------PYID 247
++ L A L+ ++ NW Y + L+ S + A+ L P
Sbjct: 62 GVYALCSAHLANVVMNWAGMRCPYKLLRMVLALVCMSSEVGRAVWLRFSPPLPASGPQPS 121
Query: 248 NFSSIGGFISGFLLGFTLLFTPQTRI 273
+ + G + G +G T+L + + R+
Sbjct: 122 FMAHLAGAVVGVSMGLTILRSYEERL 147
>sp|P34356|ROM2_CAEEL Rhomboid-related protein 2 OS=Caenorhabditis elegans GN=rom-2 PE=3
SV=2
Length = 435
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 15/153 (9%)
Query: 126 LKEYH--HTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGS 183
+ +YH WRLFT ++ G H+I N+ + +G+ LE RI I+Y GS
Sbjct: 161 VSQYHLPELWRLFTYCLINVGIFHIIFNILIQLAIGVPLEL-VHRWRIYILYFMGVLFGS 219
Query: 184 LAAALFVQNSPVVC--ASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIG 241
+ +L + + +C A+GS F L+ + ++ + N+ + + +L + +++ +
Sbjct: 220 I-LSLALDPTVFLCGGAAGS-FSLIASHITTIATNFKEMENATCRLPILIVFAALDYVLA 277
Query: 242 LL-----PYIDNFS---SIGGFISGFLLGFTLL 266
+ P ID S +GG ++G L F L
Sbjct: 278 VYQRFFAPRIDKVSMYGHLGGLVAGILFTFILF 310
>sp|Q2NSZ8|RNFD_SODGM Electron transport complex protein RnfD OS=Sodalis glossinidius
(strain morsitans) GN=rnfD PE=3 SV=1
Length = 346
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 33/154 (21%)
Query: 120 ALRQTFLKEYHHTWRLFTCP---WLHAGFI--------------HLILNLGCIVLVGIHL 162
LR + +HH W W + GF+ H+ L+L +L+G L
Sbjct: 195 GLRTGAMTAFHHRWDWQASAGWTWANIGFLLGGLYLIWRRVISWHIPLSLLAAMLIGAGL 254
Query: 163 EKEFGPVRIG--IIYIFSAFVGSLAAALFVQNSPVVCASGS----LFGLLGAMLSGLIRN 216
PV ++++FS ++ A F+ PV A+ +FG L +L LIR
Sbjct: 255 GHWLAPVVSAPPLLHLFSG--ATMLGAFFIATDPVTAAATVRGRVIFGALTGLLVWLIRT 312
Query: 217 WNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFS 250
W Y D A VLL + +P ID+++
Sbjct: 313 WGGYPDGVAFAVLLANIC--------VPLIDHYT 338
>sp|P46116|AARA_PROST Rhomboid protease AarA OS=Providencia stuartii GN=aarA PE=1 SV=1
Length = 281
Score = 40.0 bits (92), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 70/173 (40%), Gaps = 35/173 (20%)
Query: 133 WRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALF--- 189
WR LH+ HL N + ++GI E+ +G ++ IYI S +L +A +
Sbjct: 69 WRYPISMMLHSNGTHLAFNCLALFVIGIGCERAYGKFKLLAIYIISGIGAALFSAYWQYY 128
Query: 190 -VQNSPV-----------VCASGSLFGLLGAMLSGLI--------------RNWNFYTDK 223
+ NS + V ASG++ G+ A + LI R +
Sbjct: 129 EISNSDLWTDSTVYITIGVGASGAIMGIAAASVIYLIKVVINKPNPHPVIQRRQKYQLYN 188
Query: 224 FAAIVLLFFVSTINFAIGLLPYIDNFSSIGGFISGFLLGFTLLFTPQTRIVAH 276
A++ L ++ GL +DN + IGG I G L+ + P VA+
Sbjct: 189 LIAMIALTLIN------GLQSGVDNAAHIGGAIIGALISIAYILVPHKLRVAN 235
>sp|A8GKU2|GLPG_SERP5 Rhomboid protease GlpG OS=Serratia proteamaculans (strain 568)
GN=glpG PE=3 SV=1
Length = 278
Score = 38.5 bits (88), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 127 KEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAA 186
+Y WR + +LH +H+ NL +G LEK G ++ ++ + SAF A
Sbjct: 131 SQYLQLWRWVSHAFLHFSLLHITFNLLWWWYLGGPLEKRLGSGKLFVLAVVSAFFSGWAQ 190
Query: 187 ALFVQNSPVVCASGSLFGLLGAMLSGLI 214
+LF SG+LFG L ++ L+
Sbjct: 191 SLF---------SGALFGGLSGVVYALM 209
>sp|Q7N9W4|GLPG_PHOLL Rhomboid protease GlpG OS=Photorhabdus luminescens subsp. laumondii
(strain TT01) GN=glpG PE=3 SV=1
Length = 282
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 133 WRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQN 192
WR T LH +H+I NL +G EK G ++ +I I SA +LF
Sbjct: 138 WRWVTHGLLHFSLLHIIFNLMWWWYLGGQTEKHLGTGKLFVIMIVSAVFSGWGQSLF--- 194
Query: 193 SPVVCASGSLFGLLGAMLSGLI 214
SGS FG L ++ LI
Sbjct: 195 ------SGSHFGGLSGVVYALI 210
>sp|Q6CZL3|GLPG_ERWCT Rhomboid protease GlpG OS=Erwinia carotovora subsp. atroseptica
(strain SCRI 1043 / ATCC BAA-672) GN=glpG PE=3 SV=2
Length = 276
Score = 35.8 bits (81), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 6/134 (4%)
Query: 133 WRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQN 192
WR F+ LH +H++ NL +G +EK G ++ +I + SA V A + +
Sbjct: 136 WRWFSHALLHFSLLHILFNLMWWWYLGGPVEKVLGTGKLLVIALVSALVSGWAQS-WCSG 194
Query: 193 SPVVCASGSLFGLLGAMLSGLIRNWNFYTD---KFAAIVLLFFVSTINFAIGLLPYIDNF 249
+ SG ++ L+G + R + Y A LL+ V+ +G+ I N
Sbjct: 195 TYFGGLSGVVYALMGYVWLRGEREPDGYLSMPRSLMAFALLWLVAGYFDILGM--SIANA 252
Query: 250 SSIGGFISGFLLGF 263
+ + G I G L+ F
Sbjct: 253 AHVAGLIVGLLMAF 266
>sp|B1JHY8|GLPG_YERPY Rhomboid protease GlpG OS=Yersinia pseudotuberculosis serotype O:3
(strain YPIII) GN=glpG PE=3 SV=1
Length = 278
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 127 KEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAA 186
+Y WR + +LH +H++ NL +G +EK G ++ ++ I SA
Sbjct: 131 SQYLQIWRWVSHAFLHFSLLHILFNLMWWWYLGGQMEKRLGTSKLLVLTIVSAVFSGWGQ 190
Query: 187 ALFVQNSPVVCASGSLFGLLG 207
+LF + SG ++ L+G
Sbjct: 191 SLF-SGANFGGLSGVVYALMG 210
>sp|A4TGR2|GLPG_YERPP Rhomboid protease GlpG OS=Yersinia pestis (strain Pestoides F)
GN=glpG PE=3 SV=1
Length = 278
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 127 KEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAA 186
+Y WR + +LH +H++ NL +G +EK G ++ ++ I SA
Sbjct: 131 SQYLQIWRWVSHAFLHFSLLHILFNLMWWWYLGGQMEKRLGTSKLLVLTIVSAVFSGWGQ 190
Query: 187 ALFVQNSPVVCASGSLFGLLG 207
+LF + SG ++ L+G
Sbjct: 191 SLF-SGANFGGLSGVVYALMG 210
>sp|Q1CCK6|GLPG_YERPN Rhomboid protease GlpG OS=Yersinia pestis bv. Antiqua (strain
Nepal516) GN=glpG PE=3 SV=1
Length = 278
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 127 KEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAA 186
+Y WR + +LH +H++ NL +G +EK G ++ ++ I SA
Sbjct: 131 SQYLQIWRWVSHAFLHFSLLHILFNLMWWWYLGGQMEKRLGTSKLLVLTIVSAVFSGWGQ 190
Query: 187 ALFVQNSPVVCASGSLFGLLG 207
+LF + SG ++ L+G
Sbjct: 191 SLF-SGANFGGLSGVVYALMG 210
>sp|Q7CFX8|GLPG_YERPE Rhomboid protease GlpG OS=Yersinia pestis GN=glpG PE=3 SV=1
Length = 278
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 127 KEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAA 186
+Y WR + +LH +H++ NL +G +EK G ++ ++ I SA
Sbjct: 131 SQYLQIWRWVSHAFLHFSLLHILFNLMWWWYLGGQMEKRLGTSKLLVLTIVSAVFSGWGQ 190
Query: 187 ALFVQNSPVVCASGSLFGLLG 207
+LF + SG ++ L+G
Sbjct: 191 SLF-SGANFGGLSGVVYALMG 210
>sp|B2K5W4|GLPG_YERPB Rhomboid protease GlpG OS=Yersinia pseudotuberculosis serotype IB
(strain PB1/+) GN=glpG PE=3 SV=1
Length = 278
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 127 KEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAA 186
+Y WR + +LH +H++ NL +G +EK G ++ ++ I SA
Sbjct: 131 SQYLQIWRWVSHAFLHFSLLHILFNLMWWWYLGGQMEKRLGTSKLLVLTIVSAVFSGWGQ 190
Query: 187 ALFVQNSPVVCASGSLFGLLG 207
+LF + SG ++ L+G
Sbjct: 191 SLF-SGANFGGLSGVVYALMG 210
>sp|Q1C2L2|GLPG_YERPA Rhomboid protease GlpG OS=Yersinia pestis bv. Antiqua (strain
Antiqua) GN=glpG PE=3 SV=1
Length = 278
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 127 KEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAA 186
+Y WR + +LH +H++ NL +G +EK G ++ ++ I SA
Sbjct: 131 SQYLQIWRWVSHAFLHFSLLHILFNLMWWWYLGGQMEKRLGTSKLLVLTIVSAVFSGWGQ 190
Query: 187 ALFVQNSPVVCASGSLFGLLG 207
+LF + SG ++ L+G
Sbjct: 191 SLF-SGANFGGLSGVVYALMG 210
>sp|A7FNW6|GLPG_YERP3 Rhomboid protease GlpG OS=Yersinia pseudotuberculosis serotype O:1b
(strain IP 31758) GN=glpG PE=3 SV=1
Length = 278
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 127 KEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAA 186
+Y WR + +LH +H++ NL +G +EK G ++ ++ I SA
Sbjct: 131 SQYLQIWRWVSHAFLHFSLLHILFNLMWWWYLGGQMEKRLGTSKLLVLTIVSAVFSGWGQ 190
Query: 187 ALFVQNSPVVCASGSLFGLLG 207
+LF + SG ++ L+G
Sbjct: 191 SLF-SGANFGGLSGVVYALMG 210
>sp|Q6CR06|RBD2_KLULA Rhomboid protein 2 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=RBD2 PE=3 SV=1
Length = 271
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 57/136 (41%), Gaps = 10/136 (7%)
Query: 134 RLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIY----IFSAFVGSLAAALF 189
R+ P H F HL N+ + + E+ G + G+I +F+A L +L
Sbjct: 56 RISLYPLAHLSFFHLFFNVISTFSMIVMFEESHGTLYTGVILNLLAVFTAIPYCLIGSLL 115
Query: 190 VQNSPVVCASGSLFGLLG--AMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYID 247
N + ASG F LG A+ +RN T F+ L F V+ + L P
Sbjct: 116 FPNVEIGGASGWFFSFLGYFAVKESRVRNSVMITSTFSFPTLYFPVALLFVTALLAPG-- 173
Query: 248 NFSSIGGFISGFLLGF 263
SS+ G G LLG+
Sbjct: 174 --SSLPGHAIGLLLGY 187
>sp|Q664J1|GLPG_YERPS Rhomboid protease GlpG OS=Yersinia pseudotuberculosis serotype I
(strain IP32953) GN=glpG PE=3 SV=1
Length = 278
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 127 KEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAA 186
+Y WR + +LH +H++ NL +G +EK G ++ ++ I SA
Sbjct: 131 SQYLQIWRWVSHAFLHFSLLHILFNLMWWWYLGGQMEKRLGTSKLLVLTIVSAVFSGWGQ 190
Query: 187 ALFVQNSPVVCASGSLFGLLG 207
+LF + SG ++ L+G
Sbjct: 191 SLF-SGANFGGLSGVVYALMG 210
>sp|A1TZ62|RNFD_MARAV Electron transport complex protein RnfD OS=Marinobacter aquaeolei
(strain ATCC 700491 / DSM 11845 / VT8) GN=rnfD PE=3 SV=1
Length = 350
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 182 GSLAAALFVQNSPVVCASGS----LFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTIN 237
G++ A F+ PV A+ ++G +L LIR+W Y D A VLL +N
Sbjct: 266 GTMLGAFFIATDPVSAATSHQGKLIYGAGIGVLVYLIRSWGNYPDAVAFSVLL-----MN 320
Query: 238 FAIGLLPYIDNFS 250
FA+ P+ID+++
Sbjct: 321 FAV---PFIDHYT 330
>sp|Q6CDV6|RBD2_YARLI Rhomboid protein 2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=RBD2 PE=3 SV=1
Length = 297
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 121 LRQTFLKEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAF 180
LR T L + R+ P +HA + HL+LNL + + E+ G VR GI+ A
Sbjct: 47 LRSTALTNFELN-RISFYPLVHATWFHLLLNLVALQPIVSQFERVNGTVRTGIVLNILAV 105
Query: 181 VGSLAAAL----FVQNSPVVCASGSLFGLLG 207
V ++ L F + V+ +S +F +G
Sbjct: 106 VTAIPWCLLSIGFFPDEAVLGSSAWIFSFMG 136
>sp|A3QEN7|RNFD_SHELP Electron transport complex protein RnfD OS=Shewanella loihica
(strain ATCC BAA-1088 / PV-4) GN=rnfD PE=3 SV=1
Length = 350
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 26/136 (19%)
Query: 114 TLDQMGALRQTFLKEYHHTWRLFTCPWLHAGFIHLILNL-----GCIVLVGIHL------ 162
TLD++ + +F + W L +L G + L L L +L + +
Sbjct: 199 TLDEI-LTKASFSDGFGIGWALINLAYLAGGLVMLKLKLIRWQISTAILASLFVCASIGY 257
Query: 163 ----EKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGS----LFGLLGAMLSGLI 214
+ GP ++++FS ++ AA F+ PV A+ + +FG L +L LI
Sbjct: 258 LLSPDTHMGP----LLHLFSG--ATMLAAFFIATDPVTAATSTRGRLIFGSLIGLLVYLI 311
Query: 215 RNWNFYTDKFAAIVLL 230
R++ Y D FA VLL
Sbjct: 312 RSFCGYPDAFAFAVLL 327
>sp|P44783|GLPG_HAEIN Rhomboid protease GlpG OS=Haemophilus influenzae (strain ATCC 51907
/ DSM 11121 / KW20 / Rd) GN=glpG PE=1 SV=1
Length = 192
Score = 33.1 bits (74), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 20/142 (14%)
Query: 132 TWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQ 191
WR + +H +H++ NL + G +E+ FG V++ ++Y+ ++ A +VQ
Sbjct: 50 VWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVAS-----AITGYVQ 104
Query: 192 NSPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVL-----LFFVSTINFAIGLLP-- 244
N + + FGL G + + + + F DK + F + + A+G +
Sbjct: 105 N---YVSGPAFFGLSGVVYA--VLGYVFIRDKLNHHLFDLPEGFFTMLLVGIALGFISPL 159
Query: 245 ---YIDNFSSIGGFISGFLLGF 263
+ N + I G I G + GF
Sbjct: 160 FGVEMGNAAHISGLIVGLIWGF 181
>sp|Q5BEG1|CHS7_EMENI Chitin synthase export chaperone OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=chs7 PE=3 SV=1
Length = 331
Score = 32.7 bits (73), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 14/125 (11%)
Query: 143 AGFIHLILNLGCIVLVGIHLEKEFGPV-RIGIIYIFSAFVGSLAAALFVQNSPVVCASGS 201
A F+H+I LG V++ +H+ +F V R II F ++ +L + V SG
Sbjct: 54 ASFLHII-ALGMTVIMILHIRSKFTAVGRKEIITFFYIYMALTVCSLVIDAGVVPPRSGP 112
Query: 202 L-------FGLLGAMLSGLIRN----WNFYTDKFA-AIVLLFFVSTINFAIGLLPYIDNF 249
GL A+ + L+ N + Y D A ++ LL ST+ FA+ L I F
Sbjct: 113 FPWFVAVQNGLTSALCTSLLVNGFVGFQLYEDGTALSVWLLRLTSTVMFAVSFLISILTF 172
Query: 250 SSIGG 254
S GG
Sbjct: 173 KSWGG 177
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.140 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,926,788
Number of Sequences: 539616
Number of extensions: 5529303
Number of successful extensions: 15898
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 15770
Number of HSP's gapped (non-prelim): 184
length of query: 394
length of database: 191,569,459
effective HSP length: 119
effective length of query: 275
effective length of database: 127,355,155
effective search space: 35022667625
effective search space used: 35022667625
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 62 (28.5 bits)