Query 048569
Match_columns 394
No_of_seqs 376 out of 1922
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 10:44:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048569.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048569hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2289 Rhomboid family protei 100.0 6.3E-46 1.4E-50 359.6 9.3 277 53-340 35-316 (316)
2 PTZ00101 rhomboid-1 protease; 100.0 7.7E-36 1.7E-40 287.1 23.7 196 48-268 43-241 (278)
3 KOG2290 Rhomboid family protei 100.0 1.4E-36 3.1E-41 298.7 7.8 242 84-348 400-644 (652)
4 PRK10907 intramembrane serine 100.0 1.6E-28 3.5E-33 236.7 20.3 176 58-267 94-270 (276)
5 COG0705 Membrane associated se 99.9 1.5E-24 3.2E-29 204.3 16.7 188 57-270 16-214 (228)
6 PF01694 Rhomboid: Rhomboid fa 99.9 1.5E-24 3.3E-29 189.1 6.6 143 128-270 2-145 (145)
7 KOG2632 Rhomboid family protei 99.7 3.7E-16 8.1E-21 146.9 13.1 175 54-264 11-195 (258)
8 KOG2980 Integral membrane prot 98.8 3.8E-09 8.2E-14 101.5 4.9 176 58-267 115-301 (310)
9 PF08551 DUF1751: Eukaryotic i 98.1 2.3E-06 4.9E-11 70.6 3.3 59 131-189 7-65 (99)
10 PF04511 DER1: Der1-like famil 97.8 0.00041 9E-09 64.1 12.5 69 121-189 31-103 (197)
11 KOG0858 Predicted membrane pro 97.2 0.0031 6.6E-08 59.4 10.9 100 54-187 9-112 (239)
12 KOG2890 Predicted membrane pro 96.8 0.0021 4.5E-08 62.4 5.5 132 130-267 65-215 (326)
13 KOG2290 Rhomboid family protei 96.8 0.0012 2.5E-08 67.1 3.9 85 53-137 195-286 (652)
14 KOG4463 Uncharacterized conser 94.8 0.018 3.8E-07 55.0 2.3 63 126-189 45-107 (323)
15 COG5291 Predicted membrane pro 92.6 0.42 9.1E-06 45.4 7.2 48 122-169 50-99 (313)
16 COG0705 Membrane associated se 71.7 3 6.5E-05 39.0 2.6 74 129-216 137-210 (228)
17 PF11992 DUF3488: Domain of un 70.7 1.2E+02 0.0025 30.2 15.3 28 242-269 119-146 (325)
18 COG4769 Predicted membrane pro 65.2 51 0.0011 29.8 8.7 102 165-266 51-162 (181)
19 COG4721 ABC-type cobalt transp 64.4 68 0.0015 29.1 9.3 98 169-273 18-117 (192)
20 PF03419 Peptidase_U4: Sporula 59.3 68 0.0015 31.3 9.5 33 146-178 11-43 (293)
21 PRK10263 DNA translocase FtsK; 48.3 5.6E+02 0.012 30.8 16.6 16 245-260 183-198 (1355)
22 PRK13108 prolipoprotein diacyl 46.2 1.5E+02 0.0032 31.3 9.8 23 199-221 61-83 (460)
23 PF09527 ATPase_gene1: Putativ 46.0 1E+02 0.0023 22.0 6.3 42 146-187 8-50 (55)
24 PHA03242 envelope glycoprotein 43.7 2.2E+02 0.0049 29.6 10.5 53 159-211 207-265 (428)
25 PRK09776 putative diguanylate 43.3 3E+02 0.0064 31.5 12.7 14 172-185 4-17 (1092)
26 TIGR00834 ae anion exchange pr 37.9 3.8E+02 0.0083 30.7 12.0 123 143-266 374-499 (900)
27 PF03348 Serinc: Serine incorp 37.6 1.9E+02 0.0041 30.1 9.1 35 295-331 178-212 (429)
28 TIGR02854 spore_II_GA sigma-E 36.8 3.7E+02 0.008 26.3 10.6 35 146-180 11-45 (288)
29 PF06123 CreD: Inner membrane 36.6 5.2E+02 0.011 27.0 12.0 88 161-253 314-408 (430)
30 PRK11715 inner membrane protei 35.8 5.3E+02 0.011 27.0 11.9 87 162-253 321-414 (436)
31 PHA03237 envelope glycoprotein 35.2 3.3E+02 0.0072 28.3 10.2 52 160-211 211-268 (424)
32 PF06609 TRI12: Fungal trichot 34.4 6.5E+02 0.014 27.5 14.0 42 146-188 86-127 (599)
33 PF04892 VanZ: VanZ like famil 32.9 2.9E+02 0.0062 22.9 8.1 23 245-267 106-128 (133)
34 COG1296 AzlC Predicted branche 32.5 3.3E+02 0.0072 26.0 9.1 61 200-265 168-228 (238)
35 PRK02983 lysS lysyl-tRNA synth 31.7 4.8E+02 0.01 30.7 11.9 16 252-267 115-130 (1094)
36 PF06946 Phage_holin_5: Phage 31.0 1.9E+02 0.0041 23.6 6.1 56 210-265 21-78 (93)
37 PRK02983 lysS lysyl-tRNA synth 30.8 9.5E+02 0.021 28.3 14.7 40 150-189 58-98 (1094)
38 KOG3817 Uncharacterized conser 30.5 95 0.0021 31.5 5.2 34 190-223 157-190 (452)
39 PF13829 DUF4191: Domain of un 30.3 84 0.0018 29.8 4.6 40 231-270 36-75 (224)
40 PRK10263 DNA translocase FtsK; 30.0 2.6E+02 0.0056 33.4 9.2 14 62-75 26-39 (1355)
41 PRK12437 prolipoprotein diacyl 30.0 5E+02 0.011 25.0 10.1 57 195-266 53-110 (269)
42 TIGR00844 c_cpa1 na(+)/h(+) an 29.7 7E+02 0.015 28.3 12.2 16 195-210 261-276 (810)
43 PHA03239 envelope glycoprotein 29.3 6.2E+02 0.013 26.4 11.0 51 161-211 218-274 (429)
44 COG1284 Uncharacterized conser 28.8 5.7E+02 0.012 25.1 11.5 19 248-266 115-133 (289)
45 PF05546 She9_MDM33: She9 / Md 27.9 49 0.0011 30.9 2.6 38 38-79 136-173 (207)
46 PF14241 DUF4341: Domain of un 27.1 2E+02 0.0044 21.4 5.4 34 175-208 6-39 (62)
47 KOG1172 Na+-independent Cl/HCO 24.9 1E+03 0.022 27.2 12.3 124 141-267 363-491 (876)
48 PRK10490 sensor protein KdpD; 24.0 2.9E+02 0.0062 31.5 8.3 31 155-185 412-442 (895)
49 COG4452 CreD Inner membrane pr 23.4 8.3E+02 0.018 25.2 11.3 101 161-266 314-422 (443)
50 TIGR02230 ATPase_gene1 F0F1-AT 23.4 2.9E+02 0.0063 22.8 6.1 42 146-187 50-92 (100)
51 TIGR00544 lgt prolipoprotein d 22.5 6.4E+02 0.014 24.5 9.4 18 249-266 99-116 (278)
52 PRK10255 PTS system N-acetyl g 21.9 6.9E+02 0.015 27.6 10.3 44 225-268 72-115 (648)
53 PF04955 HupE_UreJ: HupE / Ure 21.7 6.1E+02 0.013 23.0 8.8 70 135-208 21-97 (180)
54 KOG2289 Rhomboid family protei 21.1 1.1E+02 0.0024 30.6 3.7 24 244-267 246-269 (316)
55 PF07456 Hpre_diP_synt_I: Hept 21.1 5.8E+02 0.013 22.5 8.1 17 195-211 69-85 (148)
56 PF04632 FUSC: Fusaric acid re 20.5 7.9E+02 0.017 26.4 10.6 126 139-266 356-486 (650)
57 PF06123 CreD: Inner membrane 20.3 4.8E+02 0.01 27.2 8.4 75 170-249 350-429 (430)
No 1
>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=100.00 E-value=6.3e-46 Score=359.63 Aligned_cols=277 Identities=41% Similarity=0.721 Sum_probs=242.9
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhccccccCCCc----hhhh-hhcccccccCCCCCCCCCChhHHHHhcchhhhhhh
Q 048569 53 KRGTDTWVISVFVILHVVAFAATMAVNDCWRNSHGN----CALK-MLGRLSFQPISENPLLGPSASTLDQMGALRQTFLK 127 (394)
Q Consensus 53 ~~~~~p~vt~~li~i~v~vfi~~~~~~~~~~~~~~~----~~~~-~~~~~sf~p~~~np~lgps~~~L~~~Gal~~~~i~ 127 (394)
+..+.+|.+..+...|+..|+..++.++|++..+++ |... ++++|+|++.++||+.+|+..++..+|+....++.
T Consensus 35 ~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~~~~~~~l~~f~~~~~~~n~~~~~s~~~~~~~~~~~i~~~~ 114 (316)
T KOG2289|consen 35 PRSWTKWLIPRFAVANVPEFIVVMYVNDCPKCCPPPIFMLCLAIVFLGRFSFQGLRENPLLGPSSLTLEKMGGLLIYKPV 114 (316)
T ss_pred cchhhHHHHhHHHhhccchhheeeeeecccccCCCchhhhhhhhhhhheeeeeeeccCCccCcCCCCccccCCceecChh
Confidence 467889999999999999999999999999887777 8877 99999999999999999999999999999999999
Q ss_pred ccCCcchheecccccccHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhcCCCcccCchHHHHHHHH
Q 048569 128 EYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLG 207 (394)
Q Consensus 128 ~~~q~wRliTs~FlH~g~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~~~l~~~~~~~vGaSGaifGLlg 207 (394)
+++|+||++|++|+|+|+.||++||+.|+++|..+|+.+|.+|+.++|+++|++|++++.++.++..+|||||++|||+|
T Consensus 115 ~r~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~~~G~~RiglIYl~gg~aGSlls~l~d~~~~sVGASggvfaLlg 194 (316)
T KOG2289|consen 115 HRGELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQVHGFLRIGLIYLAGGVAGSLLSSLFDPNSISVGASGGVFALLG 194 (316)
T ss_pred hhchhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHhhcCceEEeeehhhhhhhhHHHHHHhccCCceecccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhccccccchhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccccc
Q 048569 208 AMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSSIGGFISGFLLGFTLLFTPQTRIVAHSKAGIFEHNVK 287 (394)
Q Consensus 208 a~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~g~~p~vd~~aHLgG~l~G~l~g~~ll~~p~~r~~~~~~~~~~~~~~~ 287 (394)
++++++..||..++++...+..+++++.+++.+|+.|++|+++|+||++.|..+|++...+++-... ..++.....
T Consensus 195 A~Ls~l~~Nw~~m~~~~~~l~~ll~Ii~i~l~~G~~~~~~~~~h~gg~~~G~~~~fil~~~g~~~~~---~~~~~~~~~- 270 (316)
T KOG2289|consen 195 AHLSNLLTNWTIMKNKFAALRTLLIIIFINLDLGFAPYVDNFAHIGGLLAGFLLGFVLHIGGQLGGI---TIGLIVLRV- 270 (316)
T ss_pred HHHHHHHhhHHHhcchHHHHHHHHHHHHHHHhhccccceeccccccccCCCcchhHHhhhccceeEE---eccceeeec-
Confidence 9999999999999999998888999999999999999999999999999999999999988774322 223333222
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccceeeeec
Q 048569 288 SSINFKLKLDRPIMRSVSLLLFVLVILGFLAAVLQGLNISQYCKWCKYIDCVP 340 (394)
Q Consensus 288 ~~~~~~~~~~~~~l~~v~l~~~~~li~~~~~~~~~~~~~~~~C~~C~y~~C~p 340 (394)
+.|++..|.+.|++..+.++..+.+....+|++ ++|.||+++.|+|
T Consensus 271 ---~~~~~~~q~~~w~~~~~~~v~~~~~~~~~if~~----~~~~~~~~~~~~~ 316 (316)
T KOG2289|consen 271 ---FSKRLPYQLLLWIVLLVYLVAGLFASLFNIFDG----KYCLWCHPLSCVP 316 (316)
T ss_pred ---cccccccchHHHHHHHHHHHHHHHHHHHHhhcC----CccccccccCCCC
Confidence 256677777777666665333332222345544 8999999999987
No 2
>PTZ00101 rhomboid-1 protease; Provisional
Probab=100.00 E-value=7.7e-36 Score=287.05 Aligned_cols=196 Identities=27% Similarity=0.371 Sum_probs=162.7
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHHHHHHhccccccCCCchhhhhhcccccccCCCCCCCCCChhHHHHhcchhhhhhh
Q 048569 48 KSRGRKRGTDTWVISVFVILHVVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISENPLLGPSASTLDQMGALRQTFLK 127 (394)
Q Consensus 48 ~~~~~~~~~~p~vt~~li~i~v~vfi~~~~~~~~~~~~~~~~~~~~~~~~sf~p~~~np~lgps~~~L~~~Gal~~~~i~ 127 (394)
-+|+.++...+.+|..++++|+++|++++..+ .+..++|+++.+.++|+++++.+.
T Consensus 43 ler~Fp~f~i~~l~~~Iiii~iivfil~l~~~------------------------~~~~l~p~~~~L~~~Ga~~~~~i~ 98 (278)
T PTZ00101 43 LNLIFPHFTWKSFIMAISIIQIIVFIISVSIK------------------------PADFLTPSDSLLVTLGANVASRIK 98 (278)
T ss_pred HHHHcCCccHHHHHHHHHHHHHHHHHHHHHhc------------------------ccccCCCCHHHHHHHhCcchhhhh
Confidence 34566888999999999999999999987532 122467888999999999988775
Q ss_pred ccCCcchheecccccccHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhcCCCcccCchHHHHHHHH
Q 048569 128 EYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLG 207 (394)
Q Consensus 128 ~~~q~wRliTs~FlH~g~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~~~l~~~~~~~vGaSGaifGLlg 207 (394)
+ +||||++|++|+|.|+.|+++||+.++.+|..+|+.+|++|+.++|+++|++|++++..+.+...++||||++||++|
T Consensus 99 ~-gq~WRLiT~~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~ilYl~sGi~G~l~s~~~~~~~~svGASgAifGLiG 177 (278)
T PTZ00101 99 Q-GEIHRLILPIFLHANIFHTFFNVFFQLRMGFTLEKNYGIVKIIILYFLTGIYGNILSSSVTYCPIKVGASTSGMGLLG 177 (278)
T ss_pred c-CCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHccCCcEEehhHHHHHHHH
Confidence 4 999999999999999999999999999999999999999999999999999999999998877889999999999999
Q ss_pred HHHhhhhccccccchhHHHHHHHHHHHHHHHHH--hh-cCchhHHHHHHHHHHHHHHHHHHhcC
Q 048569 208 AMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAI--GL-LPYIDNFSSIGGFISGFLLGFTLLFT 268 (394)
Q Consensus 208 a~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~--g~-~p~vd~~aHLgG~l~G~l~g~~ll~~ 268 (394)
+.++++..+|...+.+...+..++.+.++.+.. .. .|++|++||+||+++|+++|+.+.++
T Consensus 178 a~~~~lil~w~~~~~~~~~~~~~i~~~li~~~l~~~~~g~~Id~~aHlGG~i~G~llg~~~~~~ 241 (278)
T PTZ00101 178 IVTSELILLWHVIRHRERVVFNIIFFSLISFFYYFTFNGSNIDHVGHLGGLLSGISMGILYNSQ 241 (278)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHhh
Confidence 999988888866544443332222223332222 22 37899999999999999999987543
No 3
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-36 Score=298.67 Aligned_cols=242 Identities=26% Similarity=0.446 Sum_probs=202.7
Q ss_pred cCCCchhhhhhcccccc--cCCCCCCCCCChhHHHHh-cchhhhhhhccCCcchheecccccccHHHHHHHHHHHHHHHH
Q 048569 84 NSHGNCALKMLGRLSFQ--PISENPLLGPSASTLDQM-GALRQTFLKEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGI 160 (394)
Q Consensus 84 ~~~~~~~~~~~~~~sf~--p~~~np~lgps~~~L~~~-Gal~~~~i~~~~q~wRliTs~FlH~g~~HLl~Nm~~l~~~G~ 160 (394)
+.+|.|.+..-.+..|. ..+||.+|+....++... |.+..-+-..++|+|||+||.|+|+|++|++..|..++.+.+
T Consensus 400 ~~qG~CeIttreYCdFmrG~~HEeAtLCSQVhC~d~VCGllPFln~e~PdQfYRL~~SLFlHagviH~~vSi~FQm~vmr 479 (652)
T KOG2290|consen 400 GTQGLCEITTREYCDFMRGYFHEEATLCSQVHCFDGVCGLLPFLNPEVPDQFYRLWLSLFLHAGVIHLLVSICFQMTVMR 479 (652)
T ss_pred ccCceeeechHHHHHHHhhhhhhhhhhhhhhhhhhcccccccccCCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34456666555555554 357999999999999887 665555556689999999999999999999999999999999
Q ss_pred HHHHhhchhHHHHHHHHHHHHHHHHHHHhcCCCcccCchHHHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHHHH
Q 048569 161 HLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAI 240 (394)
Q Consensus 161 ~lE~~~G~~r~~~lyl~sgi~g~l~~~l~~~~~~~vGaSGaifGLlga~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~ 240 (394)
.+|+..|+.|++++|++|||.|++++++|.|+.+.||.||+-||++++.+++++.+|+...+|+.++..+++.+++..+
T Consensus 480 dlEkL~g~~riAIiy~~SGitGNLASAIFlpY~~eVgPa~sQ~Gila~l~vEl~qs~~il~~~w~a~~~Lia~~L~L~i- 558 (652)
T KOG2290|consen 480 DLEKLAGWHRIAIIYFLSGITGNLASAIFLPYRAEVGPAGSQFGILACLFVELFQSWQILERPWRAFFHLIATLLVLCI- 558 (652)
T ss_pred HHHHhhcchhhheeeecccccccchheeeeccccccCCcccccchHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999988877766555544
Q ss_pred hhcCchhHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 048569 241 GLLPYIDNFSSIGGFISGFLLGFTLLFTPQTRIVAHSKAGIFEHNVKSSINFKLKLDRPIMRSVSLLLFVLVILGFLAAV 320 (394)
Q Consensus 241 g~~p~vd~~aHLgG~l~G~l~g~~ll~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~l~~~~~li~~~~~~~ 320 (394)
|++|++||+||+.|+++|++.+++++ |....+ - +.+.+++.+.+++.+++..|++++++++
T Consensus 559 GliPWiDN~aHlfG~i~GLl~s~~~~--PYi~Fg------~-----------~d~yrKr~~ilIs~ivf~~Lla~Lvv~f 619 (652)
T KOG2290|consen 559 GLIPWIDNWAHLFGTIFGLLTSIIFL--PYIDFG------D-----------FDLYRKRFYILISQIVFSGLLAILVVVF 619 (652)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHhh--cccccc------c-----------hhhhhhHHHHHHHHHHHHHHHHHHHHhe
Confidence 99999999999999999999999998 553222 1 1223344677788888888887777755
Q ss_pred HhcCCCCCCCCccceeeeecCCCCCcCC
Q 048569 321 LQGLNISQYCKWCKYIDCVPSKRWSCND 348 (394)
Q Consensus 321 ~~~~~~~~~C~~C~y~~C~p~~~~~C~~ 348 (394)
| .+. -.|+||.|++|+|+.+-+|..
T Consensus 620 y-~~~--i~cpWce~ltClP~~~~~~e~ 644 (652)
T KOG2290|consen 620 Y-NYP--IDCPWCEHLTCLPFTDCFCEK 644 (652)
T ss_pred e-ecc--cCCchhhhccccchhhhhhhh
Confidence 5 444 479999999999999877654
No 4
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=99.96 E-value=1.6e-28 Score=236.68 Aligned_cols=176 Identities=20% Similarity=0.170 Sum_probs=128.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccccccCCCchhhhhhcccccccCCCCCCCCCChhHHHHhcchhhhhhhccCCcchhee
Q 048569 58 TWVISVFVILHVVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISENPLLGPSASTLDQMGALRQTFLKEYHHTWRLFT 137 (394)
Q Consensus 58 p~vt~~li~i~v~vfi~~~~~~~~~~~~~~~~~~~~~~~~sf~p~~~np~lgps~~~L~~~Gal~~~~i~~~~q~wRliT 137 (394)
..+|..++++|+++|+++....+ ..+..+... +......+||||++|
T Consensus 94 ~p~T~~li~i~i~vf~l~~~~~~--------------------------------~~~~~~l~~-~~~~~~~~q~WRl~T 140 (276)
T PRK10907 94 GPLTLGVMIACVVVFILMQILGD--------------------------------QTVMLWLAW-PFDPSLKFELWRYFT 140 (276)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcc--------------------------------HHHHHHHhc-cccccccCCcHHHHh
Confidence 34899999999999999866422 011111111 112234699999999
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhcCCCcccCchHHHHHHHHHHHhhhhccc
Q 048569 138 CPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRNW 217 (394)
Q Consensus 138 s~FlH~g~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~~~l~~~~~~~vGaSGaifGLlga~~~~~~~~~ 217 (394)
++|+|.|+.|+++||+.+|.+|..+|+.+|++|++.+|+++|+.|+++..++.+ ...+|+||++||++|+.........
T Consensus 141 ~~flH~~~~Hl~fNml~l~~lG~~iE~~~G~~~~l~l~l~s~i~~~~~~~~~~~-~~~gGaSGvVygL~g~~~~~~~~~p 219 (276)
T PRK10907 141 HALLHFSLLHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGWVQSKFSG-PWFGGLSGVVYALMGYVWLRGERDP 219 (276)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHcc-chhhHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999999888753 5689999999999998755432222
Q ss_pred cccc-hhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhc
Q 048569 218 NFYT-DKFAAIVLLFFVSTINFAIGLLPYIDNFSSIGGFISGFLLGFTLLF 267 (394)
Q Consensus 218 ~~~~-~~~~~l~~l~~~~~~~l~~g~~p~vd~~aHLgG~l~G~l~g~~ll~ 267 (394)
.... -+...+..+++++++.+.-.+.++++|.||+||+++|+++|+..-+
T Consensus 220 ~~~~~lp~~~~~f~llwl~~g~~~~~g~~Ian~AHlgGli~Gll~g~~~~~ 270 (276)
T PRK10907 220 QSGIYLPRGLIAFALLWLVAGYFDLFGMSIANAAHVAGLAVGLAMAFWDTR 270 (276)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhhh
Confidence 1111 1222222233333332222234689999999999999999987653
No 5
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]
Probab=99.92 E-value=1.5e-24 Score=204.28 Aligned_cols=188 Identities=26% Similarity=0.384 Sum_probs=142.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHhccccccCCCchhhhhhcccccccCCCCCCCCCChhHHHHhcchhhhhhhccC---Ccc
Q 048569 57 DTWVISVFVILHVVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISENPLLGPSASTLDQMGALRQTFLKEYH---HTW 133 (394)
Q Consensus 57 ~p~vt~~li~i~v~vfi~~~~~~~~~~~~~~~~~~~~~~~~sf~p~~~np~lgps~~~L~~~Gal~~~~i~~~~---q~w 133 (394)
.+.++..++++|+++|+...+...... ... ..+....+..+....... |+|
T Consensus 16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~w 69 (228)
T COG0705 16 APPVTLFLILLNILVFLLELVLGWSAI----FLL----------------------TFLFRLFGLYPLNLLGALARDQLW 69 (228)
T ss_pred cchHHHHHHHHHHHHHHHHHHccchHH----HHH----------------------HHhhhHHhhcchhhhccccccchH
Confidence 567899999999999999987643110 000 001111222222222212 899
Q ss_pred hheecccccccHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhcCCC--cccCchHHHHHHHHHHHh
Q 048569 134 RLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNS--PVVCASGSLFGLLGAMLS 211 (394)
Q Consensus 134 RliTs~FlH~g~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~~~l~~~~~--~~vGaSGaifGLlga~~~ 211 (394)
|++|++|+|+|+.|+++||+.++.+|..+|+.+|+.+++.+|+++|+++++....+.+.. +++||||++||++|+...
T Consensus 70 ~lit~~FlH~~~~Hll~N~~~l~~fg~~le~~~G~~~f~~~yl~~gl~~~~~~~~~~~~~~~~~~GASG~i~gllga~~~ 149 (228)
T COG0705 70 RLITAIFLHAGFLHLLFNMLALWVFGSNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGASGAIFGLLGAYFL 149 (228)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHcccccCcccchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999888765 799999999999999987
Q ss_pred hhhccccccc---hhHHHHHHHHHHHHHHHHHhhcC---chhHHHHHHHHHHHHHHHHHHhcCCc
Q 048569 212 GLIRNWNFYT---DKFAAIVLLFFVSTINFAIGLLP---YIDNFSSIGGFISGFLLGFTLLFTPQ 270 (394)
Q Consensus 212 ~~~~~~~~~~---~~~~~l~~l~~~~~~~l~~g~~p---~vd~~aHLgG~l~G~l~g~~ll~~p~ 270 (394)
.......... .+......+.++++.+++.+... ++++.||++|++.|++++..+.++.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~~~~~~ 214 (228)
T COG0705 150 LFPFARILLLFLSLPRPALILILIWLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALLSRKLR 214 (228)
T ss_pred HccccchhhhhccCchhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 7665433222 33444555566667777666543 79999999999999999988865433
No 6
>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=99.90 E-value=1.5e-24 Score=189.08 Aligned_cols=143 Identities=38% Similarity=0.685 Sum_probs=109.9
Q ss_pred ccCCcchheecccccccHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhcCCC-cccCchHHHHHHH
Q 048569 128 EYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNS-PVVCASGSLFGLL 206 (394)
Q Consensus 128 ~~~q~wRliTs~FlH~g~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~~~l~~~~~-~~vGaSGaifGLl 206 (394)
+++|+||++|++|+|.|+.|+++|++.++.+|..+|+.+|++++..+|+.+++.++++..++.+.. +.+|+||+++|++
T Consensus 2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~G~Sg~~~~l~ 81 (145)
T PF01694_consen 2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLLSGLLGSLLSLLFSPPNQPYVGASGAVFGLL 81 (145)
T ss_dssp GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S-----SSHHHHHHHH
T ss_pred CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHHHHHhhhhccccccccccccCCCcccchHHH
Confidence 469999999999999999999999999999999999999999999999999999999999988776 8999999999999
Q ss_pred HHHHhhhhccccccchhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcCCc
Q 048569 207 GAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSSIGGFISGFLLGFTLLFTPQ 270 (394)
Q Consensus 207 ga~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~g~~p~vd~~aHLgG~l~G~l~g~~ll~~p~ 270 (394)
++.......+++....+..........+.+.+..+..+++++.+|++|+++|++++..+.+||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hl~G~~~G~~~~~~~~~~~~ 145 (145)
T PF01694_consen 82 GAFLFLYPQNKKRLRFIYLALVVPIIVLVIILLLGFIPNISFLGHLGGFLAGLLYGFLILRRPQ 145 (145)
T ss_dssp HHHHHHHHCCCCCS---HCCCCCCCCCCCHHHCTSSSSTTTHHHHHHHHHHHHHHHHHHCH---
T ss_pred HHHHHHHhhccchhhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 9999888877644433211111122223444444557999999999999999999999987653
No 7
>KOG2632 consensus Rhomboid family proteins [Function unknown]
Probab=99.68 E-value=3.7e-16 Score=146.85 Aligned_cols=175 Identities=17% Similarity=0.226 Sum_probs=129.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhccccccCCCchhhhhhcccccccCCCCCCCCCChhHHHHhcchhhhhhhccCCcc
Q 048569 54 RGTDTWVISVFVILHVVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISENPLLGPSASTLDQMGALRQTFLKEYHHTW 133 (394)
Q Consensus 54 ~~~~p~vt~~li~i~v~vfi~~~~~~~~~~~~~~~~~~~~~~~~sf~p~~~np~lgps~~~L~~~Gal~~~~i~~~~q~w 133 (394)
.-..|.+|..++.++.++|++.....- . ..+ ..+.....+.|.|
T Consensus 11 ~~~~p~~ts~~~~~~~~i~lv~~~~~i----------------------~------------~~~--~l~~~~l~~~ql~ 54 (258)
T KOG2632|consen 11 WMKIPLLTSIVVVLAILIYLVSFFPGI----------------------V------------EVL--GLPSELLINWQLY 54 (258)
T ss_pred cccchHHHHHHHHHHHHHHHHhccchh----------------------h------------hHh--cCCHHHhhhHHHH
Confidence 445677899999999999987653210 0 000 1123345569999
Q ss_pred hheecccccccHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHHhcC---------CCcccCchHHHH
Q 048569 134 RLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFG-PVRIGIIYIFSAFVGSLAAALFVQ---------NSPVVCASGSLF 203 (394)
Q Consensus 134 RliTs~FlH~g~~HLl~Nm~~l~~~G~~lE~~~G-~~r~~~lyl~sgi~g~l~~~l~~~---------~~~~vGaSGaif 203 (394)
|++|++++|.+..|+++||+++|.+|..+|+.+| +.+++......++..+++..+... ....+|.||..|
T Consensus 55 RL~Ty~l~H~s~~hllfnmlaL~~~g~~fE~~~G~t~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~~~a~G~s~v~F 134 (258)
T KOG2632|consen 55 RLITYALVHLSLPHLLFNMLALWPLGSQFERTHGTTVRILMFTVLLALFSGILYLLAYHVFLLSDLVYVEGAIGFSGVLF 134 (258)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhchhHHHhhccceehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccccHHHH
Confidence 9999999999999999999999999999999999 888888888877777777665531 234699999999
Q ss_pred HHHHHHHhhhhccccccchhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHH
Q 048569 204 GLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSSIGGFISGFLLGFT 264 (394)
Q Consensus 204 GLlga~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~g~~p~vd~~aHLgG~l~G~l~g~~ 264 (394)
+.++...+....+.+....-......+..++.+....-+.|+.|.++|++|+++|+.+++.
T Consensus 135 am~~~~~~~sp~r~~~~fg~~siP~~l~Pw~lLi~~~~lvp~aSFlghl~GllvG~ay~~~ 195 (258)
T KOG2632|consen 135 AMMAVLEVQSPVRSRSVFGLFSIPIVLAPWALLIATQILVPQASFLGHLCGLLVGYAYAFS 195 (258)
T ss_pred HHHHHHhhcCcccchhhcccccccHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHH
Confidence 9999876654443322222222333455555555555567999999999999999999984
No 8
>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]
Probab=98.81 E-value=3.8e-09 Score=101.52 Aligned_cols=176 Identities=14% Similarity=0.129 Sum_probs=116.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccccccCCCchhhhhhcccccccCCCCCCCCCChhHHHHhcchhhhhhhccCCcchhee
Q 048569 58 TWVISVFVILHVVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISENPLLGPSASTLDQMGALRQTFLKEYHHTWRLFT 137 (394)
Q Consensus 58 p~vt~~li~i~v~vfi~~~~~~~~~~~~~~~~~~~~~~~~sf~p~~~np~lgps~~~L~~~Gal~~~~i~~~~q~wRliT 137 (394)
|-+++.++++|+++|..|.+..- .|. ++.+--. .....---|.+++
T Consensus 115 ~g~v~~ll~~n~~vf~lWrv~~~-------~~~------------------------~~~~mls---~~~~~t~~w~i~~ 160 (310)
T KOG2980|consen 115 NGVVFGLLIANAFVFTLWRVPQK-------QFT------------------------MIPWMLS---RNAYKTGCWKIIL 160 (310)
T ss_pred CcchhHHHHHHHHHHHHHHhcch-------hhh------------------------hhhHHhh---cccccccceeEEe
Confidence 34888999999999999976421 111 0111000 0111233566999
Q ss_pred cccccccHHHHHHHHHHHHHHHH-HHHHhhchhHHHHHHHHHHHHHHHHHHHh----cCCCcccCchHHHHHHHHHHHhh
Q 048569 138 CPWLHAGFIHLILNLGCIVLVGI-HLEKEFGPVRIGIIYIFSAFVGSLAAALF----VQNSPVVCASGSLFGLLGAMLSG 212 (394)
Q Consensus 138 s~FlH~g~~HLl~Nm~~l~~~G~-~lE~~~G~~r~~~lyl~sgi~g~l~~~l~----~~~~~~vGaSGaifGLlga~~~~ 212 (394)
+.|.|.+.+|+..||+.++.+.. .+--..|...+..+|+.++..|..+...- .+..+++||||+++++++.....
T Consensus 161 s~Fsh~~a~h~g~~~~~~~~y~~~a~~~~~~~~~~~AlylSa~~~~~~i~~~~~v~~~~~gp~LGAsGav~ai~a~~~~l 240 (310)
T KOG2980|consen 161 STFSHYSALHLGPNMLVLKSYLAGALKGSLGFSSFFALYLSAGVKGLFISVKDKVPTSWAGPSLGASGAVYAILALDCTL 240 (310)
T ss_pred ehhcchhHhhhcHHHHHHHHHhcccccCCcchhhcccceeccccccceeEeeccccccccccccccchHHHHHHHHHhhc
Confidence 99999999999999999998887 77888999999999997777765554332 23467899999999999988655
Q ss_pred hhcccccc--chhHH--HHHHHHHHHHHHHHHhhc--CchhHHHHHHHHHHHHHHHHHHhc
Q 048569 213 LIRNWNFY--TDKFA--AIVLLFFVSTINFAIGLL--PYIDNFSSIGGFISGFLLGFTLLF 267 (394)
Q Consensus 213 ~~~~~~~~--~~~~~--~l~~l~~~~~~~l~~g~~--p~vd~~aHLgG~l~G~l~g~~ll~ 267 (394)
.+...... ..+.+ +-..+-.++.+++....+ ..-|++||++|-+.|...+.....
T Consensus 241 fP~~~~~i~f~~~v~~ga~~~~~~i~~~~~a~~~l~~~~~n~~Ah~~gsl~Gv~va~~~~~ 301 (310)
T KOG2980|consen 241 FPKTTLYILFVFPVPAGAGLAFKAIAAYDFAGLILGWGFFNHAAHLSGSLFGVVVATYLWA 301 (310)
T ss_pred CcCcceeEEEeecccccchhHHHHHHHhhhcceeeccccchhHhhhcchHHHHHHHHHHHH
Confidence 44332221 11222 111222222333322222 356888999999999999988764
No 9
>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins. Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].
Probab=98.10 E-value=2.3e-06 Score=70.64 Aligned_cols=59 Identities=22% Similarity=0.368 Sum_probs=54.4
Q ss_pred CcchheecccccccHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHh
Q 048569 131 HTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALF 189 (394)
Q Consensus 131 q~wRliTs~FlH~g~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~~~l~ 189 (394)
..|+++|+.|++.+++.+++|.+.++..|+.+|+.+|++.++-.+.+.++..+++..++
T Consensus 7 ~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~~~~~ 65 (99)
T PF08551_consen 7 YPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNLLTFLL 65 (99)
T ss_pred ehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHHHHHH
Confidence 69999999999999999999999999999999999999999998888888888776653
No 10
>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins. For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.
Probab=97.77 E-value=0.00041 Score=64.14 Aligned_cols=69 Identities=19% Similarity=0.290 Sum_probs=51.6
Q ss_pred hhhhhhhccCCcchheecccccccH-HHHHHHHHHHHHHHHHHHHhh-c-h-hHHHHHHHHHHHHHHHHHHHh
Q 048569 121 LRQTFLKEYHHTWRLFTCPWLHAGF-IHLILNLGCIVLVGIHLEKEF-G-P-VRIGIIYIFSAFVGSLAAALF 189 (394)
Q Consensus 121 l~~~~i~~~~q~wRliTs~FlH~g~-~HLl~Nm~~l~~~G~~lE~~~-G-~-~r~~~lyl~sgi~g~l~~~l~ 189 (394)
.+++.+.++.|+||++|+.|.-++. .+.++|++.++..+..+|+.. + + ..++...+.+++.-.+++.+.
T Consensus 31 ~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~~~~ady~~~ll~~~~~i~~~~~~~ 103 (197)
T PF04511_consen 31 FDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQGRSADYLWFLLFGASLILILSLLI 103 (197)
T ss_pred ECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456677789999999999986555 699999999999999999983 2 2 456666665555555555443
No 11
>KOG0858 consensus Predicted membrane protein [Function unknown]
Probab=97.24 E-value=0.0031 Score=59.43 Aligned_cols=100 Identities=17% Similarity=0.106 Sum_probs=73.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhccccccCCCchhhhhhcccccccCCCCCCCCCChhHHHHhcchhhhhhhccCCcc
Q 048569 54 RGTDTWVISVFVILHVVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISENPLLGPSASTLDQMGALRQTFLKEYHHTW 133 (394)
Q Consensus 54 ~~~~p~vt~~li~i~v~vfi~~~~~~~~~~~~~~~~~~~~~~~~sf~p~~~np~lgps~~~L~~~Gal~~~~i~~~~q~w 133 (394)
-..+|.+|.....+++++=++.... ++.|. +--++++.+.++.|+|
T Consensus 9 ~~~iPpVTR~~~~~~v~tt~~~~l~----------------------------lIsP~------~l~~~p~Lv~kk~QiW 54 (239)
T KOG0858|consen 9 YLQIPPVTRYYTTACVVTTLLVRLD----------------------------LISPF------QLYLNPELVFKKFQIW 54 (239)
T ss_pred HhcCChHHHHHHHHHHHHHHHHhhc----------------------------ccCch------heEecHHHHHhHhHHH
Confidence 3457889999999998877665431 11111 1234567788899999
Q ss_pred hheeccccccc-HHHHHHHHHHHHHHHHHHHHhhc---hhHHHHHHHHHHHHHHHHHH
Q 048569 134 RLFTCPWLHAG-FIHLILNLGCIVLVGIHLEKEFG---PVRIGIIYIFSAFVGSLAAA 187 (394)
Q Consensus 134 RliTs~FlH~g-~~HLl~Nm~~l~~~G~~lE~~~G---~~r~~~lyl~sgi~g~l~~~ 187 (394)
|++|+.+.-.. -+|.++||+.++--++.+|+-.= +..|+.+.+.+++.-.+.+.
T Consensus 55 RliTs~lyfg~~gf~fl~n~~FlyrY~~~LE~g~f~~rtadf~~mllf~~~l~~~~~~ 112 (239)
T KOG0858|consen 55 RLITSFLYFGPFGFDFLMNLYFLYRYSSMLEEGSFRGRTADFLYMLLFGAVLLTLTGL 112 (239)
T ss_pred HhhhhhheeccccHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 99999998866 69999999999999999999542 36677777777776655443
No 12
>KOG2890 consensus Predicted membrane protein [Function unknown]
Probab=96.79 E-value=0.0021 Score=62.40 Aligned_cols=132 Identities=17% Similarity=0.256 Sum_probs=88.3
Q ss_pred CCcchheecccccccHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHH--------hcC----CCcccC
Q 048569 130 HHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAAL--------FVQ----NSPVVC 197 (394)
Q Consensus 130 ~q~wRliTs~FlH~g~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~~~l--------~~~----~~~~vG 197 (394)
...|+++|+.|+-.+++..+.|.+.+.+-|..+|+.+|...++..|.+.-...+++... +.. ..+-.|
T Consensus 65 ~~~WtliTs~fie~~vw~V~~sv~~L~v~G~~lEp~Wg~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G 144 (326)
T KOG2890|consen 65 FFPWTLITSGFIELNVWDVLVSVLTLSVGGKFLEPNWGSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHG 144 (326)
T ss_pred hhhHHHHhcchhhhhHHHHHHHHHheeecceeeccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEecc
Confidence 36999999999999999999999999999999999999999988876644333333222 211 235789
Q ss_pred chHHHHHHHHHHHhhhhccccccchhHHHH-------HHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhc
Q 048569 198 ASGSLFGLLGAMLSGLIRNWNFYTDKFAAI-------VLLFFVSTINFAIGLLPYIDNFSSIGGFISGFLLGFTLLF 267 (394)
Q Consensus 198 aSGaifGLlga~~~~~~~~~~~~~~~~~~l-------~~l~~~~~~~l~~g~~p~vd~~aHLgG~l~G~l~g~~ll~ 267 (394)
..|.+.|++.++=-. ........-+...+ ..+++.+++.+ -....++.+.-+.+|.+.++.+++
T Consensus 145 ~~gilaGilVa~kQl-lpd~~il~~~~~r~~~~~lP~~~l~~~~il~i-----~~f~~f~~l~s~~~g~~~sWtYLR 215 (326)
T KOG2890|consen 145 TTGILAGILVAWKQL-LPDTIILELKSGRFLYAHLPLLVLFLSLILSI-----ITFLVFASLPSITFGVLVSWTYLR 215 (326)
T ss_pred chHHHHHHHHHHHHH-cCceeEEeccchhhhhhhCCHHHHHHHHHHHH-----HHHHHhhhhHHHHHhhhhhhhhhe
Confidence 999999998876322 22221111111111 11111111111 234677888888999999999986
No 13
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=96.78 E-value=0.0012 Score=67.12 Aligned_cols=85 Identities=15% Similarity=0.271 Sum_probs=56.6
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhccccccC--CCchhhhhhc-ccccc----cCCCCCCCCCChhHHHHhcchhhhh
Q 048569 53 KRGTDTWVISVFVILHVVAFAATMAVNDCWRNS--HGNCALKMLG-RLSFQ----PISENPLLGPSASTLDQMGALRQTF 125 (394)
Q Consensus 53 ~~~~~p~vt~~li~i~v~vfi~~~~~~~~~~~~--~~~~~~~~~~-~~sf~----p~~~np~lgps~~~L~~~Gal~~~~ 125 (394)
.-...||+|+-+..+++.|=++.+...+...-+ +.+-...+++ +.+.+ -.++|+++||+...|++.||++.+=
T Consensus 195 ~~d~RP~FTyWlt~Vh~~V~iLsl~~YG~aP~gf~~~et~~~Vl~n~~v~e~VkYlqQeN~WiGP~~~dLI~LGA~fSPC 274 (652)
T KOG2290|consen 195 GDDHRPWFTYWLTFVHSFVTILSLCIYGIAPVGFSQHETVGDVLDNTLVYERVKYLQQENFWIGPSSADLIHLGAKFSPC 274 (652)
T ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHhcCCcccchhhHhHHHHHhhhhhhhhhHHHHhcCCccCccHHHHHHhccccChh
Confidence 345678999988888888877766554432211 1111111111 11111 1268999999999999999999999
Q ss_pred hhccCCcchhee
Q 048569 126 LKEYHHTWRLFT 137 (394)
Q Consensus 126 i~~~~q~wRliT 137 (394)
+.++.|.|.++-
T Consensus 275 mrrd~q~~~~I~ 286 (652)
T KOG2290|consen 275 MRRDPQVWSAIE 286 (652)
T ss_pred hhcChHHHHHHH
Confidence 999999997763
No 14
>KOG4463 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.77 E-value=0.018 Score=54.98 Aligned_cols=63 Identities=21% Similarity=0.427 Sum_probs=52.9
Q ss_pred hhccCCcchheecccccccHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHh
Q 048569 126 LKEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALF 189 (394)
Q Consensus 126 i~~~~q~wRliTs~FlH~g~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~~~l~ 189 (394)
+...+|+||++.+.|.-.+--.+.+-++.++.+ +.+||.+|+-|+..+.+.+++.+-++...+
T Consensus 45 l~~y~qywrlL~~qF~~~n~~e~~~~l~I~Y~f-R~~ERlLGShky~~fiv~s~~~~~l~~~il 107 (323)
T KOG4463|consen 45 LEKYFQYWRLLMSQFAFSNTPELMFGLYILYYF-RVFERLLGSHKYSVFIVFSGTVSLLLEVIL 107 (323)
T ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHHHhccccceeehhHHHHHHHHHHHHH
Confidence 344489999999999999888888877766665 899999999999999999998887776554
No 15
>COG5291 Predicted membrane protein [Function unknown]
Probab=92.61 E-value=0.42 Score=45.42 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=37.4
Q ss_pred hhhhhhccCCcchheecccccc-cHHHHHHHHHHHHHHHHHHHHh-hchh
Q 048569 122 RQTFLKEYHHTWRLFTCPWLHA-GFIHLILNLGCIVLVGIHLEKE-FGPV 169 (394)
Q Consensus 122 ~~~~i~~~~q~wRliTs~FlH~-g~~HLl~Nm~~l~~~G~~lE~~-~G~~ 169 (394)
+.+...++-||||++|+...-+ --+..++|++.++--.+.+|+- +|+-
T Consensus 50 ~~pL~~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g~f~~~ 99 (313)
T COG5291 50 YSPLFLKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEGCFNTS 99 (313)
T ss_pred echhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHhccccCcc
Confidence 3445667789999999766555 4678999999999999999983 4443
No 16
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]
Probab=71.73 E-value=3 Score=38.95 Aligned_cols=74 Identities=23% Similarity=0.222 Sum_probs=53.7
Q ss_pred cCCcchheecccccccHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhcCCCcccCchHHHHHHHHH
Q 048569 129 YHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGA 208 (394)
Q Consensus 129 ~~q~wRliTs~FlH~g~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~~~l~~~~~~~vGaSGaifGLlga 208 (394)
.+++|+++.+.++|....|...+... ..+...+++...+..+++....... ++|+.++.++|+++.
T Consensus 137 SG~i~gllga~~~~~~~~~~~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~~~~~-~~va~~aHl~G~i~G 202 (228)
T COG0705 137 SGAIFGLLGAYFLLFPFARILLLFLS-------------LPRPALILILIWLLYSLFSGAGSFG-PSVAWSAHLGGLIGG 202 (228)
T ss_pred hHHHHHHHHHHHHHccccchhhhhcc-------------CchhHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHH
Confidence 47788888888888877777766554 4556677777777777777665433 689999999999988
Q ss_pred HHhhhhcc
Q 048569 209 MLSGLIRN 216 (394)
Q Consensus 209 ~~~~~~~~ 216 (394)
.+......
T Consensus 203 ~l~~~~~~ 210 (228)
T COG0705 203 LLLAALLS 210 (228)
T ss_pred HHHHHHHh
Confidence 76654443
No 17
>PF11992 DUF3488: Domain of unknown function (DUF3488); InterPro: IPR021878 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with PF01841 from PFAM. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices.
Probab=70.66 E-value=1.2e+02 Score=30.19 Aligned_cols=28 Identities=18% Similarity=0.102 Sum_probs=20.2
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHHhcCC
Q 048569 242 LLPYIDNFSSIGGFISGFLLGFTLLFTP 269 (394)
Q Consensus 242 ~~p~vd~~aHLgG~l~G~l~g~~ll~~p 269 (394)
+....-....+...+...+.+++.+..+
T Consensus 119 ~~qs~~~~l~~ll~~~~~~~~L~~l~~~ 146 (325)
T PF11992_consen 119 FSQSLLFALYLLLFLVLLLAALVLLHQP 146 (325)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3456777888888888888888777443
No 18
>COG4769 Predicted membrane protein [Function unknown]
Probab=65.18 E-value=51 Score=29.83 Aligned_cols=102 Identities=10% Similarity=0.105 Sum_probs=49.0
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHhcCCCcccCchHHHHHHHHHHHhhhhccccc--c--------chhHHHHHHHHHHH
Q 048569 165 EFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRNWNF--Y--------TDKFAAIVLLFFVS 234 (394)
Q Consensus 165 ~~G~~r~~~lyl~sgi~g~l~~~l~~~~~~~vGaSGaifGLlga~~~~~~~~~~~--~--------~~~~~~l~~l~~~~ 234 (394)
.+++...+.+-++=-+.+++++.-+.......+++|++...++..+...+.-+.. . .+....+...-.+.
T Consensus 51 ~l~~~~~~~~i~lr~il~AL~sGtlfs~~Fl~sfaG~i~S~L~m~~l~~f~~k~~S~lgiS~mGaF~hNl~QLivas~Lv 130 (181)
T COG4769 51 TLNFKDALQTILLRVILQALFSGTLFSPVFLYSFAGAILSTLFMYFLYQFGPKYLSLLGISVMGAFTHNLGQLIVASFLV 130 (181)
T ss_pred hccHHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHcCCceEeeeehhhHHHHHHhHHHHHHHHHHH
Confidence 4555555555544444444444322223345566666666655554443331111 0 01111111111111
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHHHHHHHHh
Q 048569 235 TINFAIGLLPYIDNFSSIGGFISGFLLGFTLL 266 (394)
Q Consensus 235 ~~~l~~g~~p~vd~~aHLgG~l~G~l~g~~ll 266 (394)
.-.-++-+.|-....+-+.|.+.|++.+..+-
T Consensus 131 ~~~~v~l~lPll~flGivsG~~vg~~~~~~i~ 162 (181)
T COG4769 131 FTTSVMLYLPLLIFLGIVSGTAVGILANTLII 162 (181)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222234577888888888888888777654
No 19
>COG4721 ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]
Probab=64.42 E-value=68 Score=29.09 Aligned_cols=98 Identities=18% Similarity=0.288 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCcccCchHHHHHHH--HHHHhhhhccccccchhHHHHHHHHHHHHHHHHHhhcCch
Q 048569 169 VRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLL--GAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYI 246 (394)
Q Consensus 169 ~r~~~lyl~sgi~g~l~~~l~~~~~~~vGaSGaifGLl--ga~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~g~~p~v 246 (394)
.-+..+|+..+..+++.+..++|-...-|+-+-++|+- ++.+..++ .++|..++..=++......++ ..+.
T Consensus 18 i~fgvvfl~w~~~~~v~at~lhp~ale~~~~~i~~GiW~maavi~~l~-----IpkpGaAl~~Ev~Aa~ve~ll--~sqf 90 (192)
T COG4721 18 IVFGVVFLGWGYVGNVLATLLHPLALEPFANEILFGIWFMAAVIAALF-----IPKPGAALIGEVLAALVEVLL--GSQF 90 (192)
T ss_pred HHHHhheeehhhhhHHHHHhcchhhcCccccchHHHHHHHHHHHeeee-----ecCCcHHHHHHHHHHHHHHHH--cCCC
Confidence 44667889999999999999988777778889999863 33322222 234444433332222333222 3455
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCcccc
Q 048569 247 DNFSSIGGFISGFLLGFTLLFTPQTRI 273 (394)
Q Consensus 247 d~~aHLgG~l~G~l~g~~ll~~p~~r~ 273 (394)
+...-+.||+=|+-.=++|...+.+++
T Consensus 91 gi~tivsgfvQGlgaE~vFa~~kyr~~ 117 (192)
T COG4721 91 GIGTIVSGFVQGLGAEFVFAVTKYRYY 117 (192)
T ss_pred CchHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 666777888888877666655444433
No 20
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=59.33 E-value=68 Score=31.28 Aligned_cols=33 Identities=9% Similarity=0.108 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 048569 146 IHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFS 178 (394)
Q Consensus 146 ~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~s 178 (394)
..+++|.+.|+..+..+-+....+|.++--+++
T Consensus 11 ~N~~md~~lL~~t~~~~~~~~~~~Rll~~A~~G 43 (293)
T PF03419_consen 11 VNFLMDYFLLWLTARLLKRRASRWRLLLGAAIG 43 (293)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 467899999999999999999999876433333
No 21
>PRK10263 DNA translocase FtsK; Provisional
Probab=48.26 E-value=5.6e+02 Score=30.76 Aligned_cols=16 Identities=25% Similarity=0.611 Sum_probs=7.9
Q ss_pred chhHHHHHHHHHHHHH
Q 048569 245 YIDNFSSIGGFISGFL 260 (394)
Q Consensus 245 ~vd~~aHLgG~l~G~l 260 (394)
.++.+.-+++.+.+++
T Consensus 183 wlsIleriG~~v~~~~ 198 (1355)
T PRK10263 183 WVTIAEKLGGWILNIL 198 (1355)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444445555555544
No 22
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=46.22 E-value=1.5e+02 Score=31.28 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHhhhhccccccc
Q 048569 199 SGSLFGLLGAMLSGLIRNWNFYT 221 (394)
Q Consensus 199 SGaifGLlga~~~~~~~~~~~~~ 221 (394)
-+.+.|++|+=+.+.+.+|..+.
T Consensus 61 ~~vi~giIGARL~yVl~~~~~y~ 83 (460)
T PRK13108 61 WAVPFGLIGGRLYHLATDWRTYF 83 (460)
T ss_pred HHHHHHHHHHhHHHHhcCHHHHh
Confidence 35566777776666666665543
No 23
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=45.99 E-value=1e+02 Score=21.97 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhch-hHHHHHHHHHHHHHHHHHH
Q 048569 146 IHLILNLGCIVLVGIHLEKEFGP-VRIGIIYIFSAFVGSLAAA 187 (394)
Q Consensus 146 ~HLl~Nm~~l~~~G~~lE~~~G~-~r~~~lyl~sgi~g~l~~~ 187 (394)
..++.+++.-..+|..+++.+|+ ..+.++.++-|+.+++...
T Consensus 8 ~~~~~~i~~g~~~G~~lD~~~~t~p~~~~~g~llG~~~g~~~~ 50 (55)
T PF09527_consen 8 FTMAAPILVGFFLGYWLDKWFGTSPWFTLIGLLLGIAAGFYNV 50 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHH
Confidence 35677888888999999999998 5566667777777666544
No 24
>PHA03242 envelope glycoprotein M; Provisional
Probab=43.71 E-value=2.2e+02 Score=29.61 Aligned_cols=53 Identities=19% Similarity=0.164 Sum_probs=30.3
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHH------HHHHHhcCCCcccCchHHHHHHHHHHHh
Q 048569 159 GIHLEKEFGPVRIGIIYIFSAFVGS------LAAALFVQNSPVVCASGSLFGLLGAMLS 211 (394)
Q Consensus 159 G~~lE~~~G~~r~~~lyl~sgi~g~------l~~~l~~~~~~~vGaSGaifGLlga~~~ 211 (394)
.+.+++..|+.|-..+=+..++.|- +...+...++..+-.+..++|.+..+++
T Consensus 207 ~~~l~rlvg~~RaV~~Nl~~~~lgl~~lv~sL~l~m~~gNsF~v~~~~~v~~ai~~F~v 265 (428)
T PHA03242 207 SPTHHRVVGPVRAVMTNALLGGVALCTATAALMLGTIAANNFHLSLPGTLVCLTAVFAL 265 (428)
T ss_pred CcchHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeehhHHHHHHHHHHHH
Confidence 4456777788776655444433331 2222223466777777777777776654
No 25
>PRK09776 putative diguanylate cyclase; Provisional
Probab=43.32 E-value=3e+02 Score=31.52 Aligned_cols=14 Identities=7% Similarity=0.164 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHH
Q 048569 172 GIIYIFSAFVGSLA 185 (394)
Q Consensus 172 ~~lyl~sgi~g~l~ 185 (394)
+++|++.|.+|..+
T Consensus 4 ~~~~~~~~~~~~~~ 17 (1092)
T PRK09776 4 GLVSFIFTLFSLEL 17 (1092)
T ss_pred hHHHHHHHHHHHHH
Confidence 45666666655443
No 26
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=37.91 E-value=3.8e+02 Score=30.74 Aligned_cols=123 Identities=19% Similarity=0.098 Sum_probs=65.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHHhcCCCcccCchHHHHHHHHHHHhhhhccccccc
Q 048569 143 AGFIHLILNLGCIVLVGIHLEKEFG-PVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRNWNFYT 221 (394)
Q Consensus 143 ~g~~HLl~Nm~~l~~~G~~lE~~~G-~~r~~~lyl~sgi~g~l~~~l~~~~~~~vGaSGaifGLlga~~~~~~~~~~~~~ 221 (394)
+-++=++.|+.--+.||..+++.-+ .....-+.+.+++.|.+.+.+-.+.-.-+|.+|.+.-...+.. ..........
T Consensus 374 a~ifiyFA~L~PaIaFG~ll~~~T~g~~gv~E~Llstai~Giifslf~GQPL~IlG~TGPilvF~~~ly-~~c~~~~~~y 452 (900)
T TIGR00834 374 AVIFIYFAALSPAITFGGLLGEKTRNMMGVSELLISTAVQGVLFALLAAQPLLVVGFSGPLLVFEEAFF-SFCESNGLEY 452 (900)
T ss_pred HHHHHHHHHhhHHhhHHHHHHHhhCCcchHHHHHHHHHHHHHHHhhhcCCceEEecCcccHHHHHHHHH-HHHhhcCCch
Confidence 3456677888888889988877654 3444555566666666655544445567899998776655442 2233222211
Q ss_pred hhHHHHHHH--HHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHh
Q 048569 222 DKFAAIVLL--FFVSTINFAIGLLPYIDNFSSIGGFISGFLLGFTLL 266 (394)
Q Consensus 222 ~~~~~l~~l--~~~~~~~l~~g~~p~vd~~aHLgG~l~G~l~g~~ll 266 (394)
.++..+..+ .++..+..+....--+-+......=++|++++++|+
T Consensus 453 l~~~~WigiW~~~~~~lla~~~~s~lvryiTRFTeEiFa~lIs~IFI 499 (900)
T TIGR00834 453 LVGRVWIGLWLVLLVLLLVATEGSFLVRYISRFTQEIFSFLISLIFI 499 (900)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 222222211 111111111111123445555556666667666665
No 27
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=37.57 E-value=1.9e+02 Score=30.12 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=20.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 048569 295 KLDRPIMRSVSLLLFVLVILGFLAAVLQGLNISQYCK 331 (394)
Q Consensus 295 ~~~~~~l~~v~l~~~~~li~~~~~~~~~~~~~~~~C~ 331 (394)
+.|...+..++++.+++-+++.++++.+.. .+.|.
T Consensus 178 ~~w~~~Li~~T~~~y~~si~~~v~~y~~f~--~~~C~ 212 (429)
T PF03348_consen 178 KRWYIALIGVTLLFYAASIAGIVLMYVFFT--PSGCS 212 (429)
T ss_pred ceehhHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCc
Confidence 456677777777777766666655332222 44565
No 28
>TIGR02854 spore_II_GA sigma-E processing peptidase SpoIIGA. Members of this protein family are the stage II sporulation protein SpoIIGA. This protein acts as an activating protease for Sigma-E, one of several specialized sigma factors of the sporulation process in Bacillus subtilis and related endospore-forming bacteria.
Probab=36.77 E-value=3.7e+02 Score=26.25 Aligned_cols=35 Identities=11% Similarity=0.203 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 048569 146 IHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAF 180 (394)
Q Consensus 146 ~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi 180 (394)
..+++|.+.|+..+..+.+....+|.++--+++++
T Consensus 11 ~Nf~~d~~LL~~t~~~lk~~~~~~Rll~ga~iGa~ 45 (288)
T TIGR02854 11 ENFIIDYFLLYLTARTLKDKVSQWRLLLAALIGSL 45 (288)
T ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 56789999999999999999999887644443333
No 29
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=36.57 E-value=5.2e+02 Score=27.00 Aligned_cols=88 Identities=19% Similarity=0.181 Sum_probs=50.5
Q ss_pred HHHHhhchhHHHHHHHHHHHHHHHHHHHhcCC-------CcccCchHHHHHHHHHHHhhhhccccccchhHHHHHHHHHH
Q 048569 161 HLEKEFGPVRIGIIYIFSAFVGSLAAALFVQN-------SPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFV 233 (394)
Q Consensus 161 ~lE~~~G~~r~~~lyl~sgi~g~l~~~l~~~~-------~~~vGaSGaifGLlga~~~~~~~~~~~~~~~~~~l~~l~~~ 233 (394)
.+|-.-+..---+=|++-|+.=.++..++..- ..++=||.+..++++.+....+.+|+. ......++.
T Consensus 314 lfE~~~~~~iHpiQY~LVGlAl~lFYlLLLSlSEhi~F~~AYliAa~a~i~Li~~Y~~~vl~~~k~-----~~~~~~~L~ 388 (430)
T PF06123_consen 314 LFELLSKLRIHPIQYLLVGLALVLFYLLLLSLSEHIGFNLAYLIAALACIGLISLYLSSVLKSWKR-----GLIFAGLLA 388 (430)
T ss_pred HHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcchH-----HHHHHHHHH
Confidence 34655555555677888888777776665321 235557888889999988887776542 222233333
Q ss_pred HHHHHHHhhcCchhHHHHHH
Q 048569 234 STINFAIGLLPYIDNFSSIG 253 (394)
Q Consensus 234 ~~~~l~~g~~p~vd~~aHLg 253 (394)
.+..++.+++---|+.--+|
T Consensus 389 ~LY~~Ly~lLq~EdyALL~G 408 (430)
T PF06123_consen 389 ALYGFLYVLLQSEDYALLMG 408 (430)
T ss_pred HHHHHHHHHHHhhhHHHHHH
Confidence 34444444444444433333
No 30
>PRK11715 inner membrane protein; Provisional
Probab=35.84 E-value=5.3e+02 Score=27.01 Aligned_cols=87 Identities=18% Similarity=0.171 Sum_probs=50.6
Q ss_pred HHHhhchhHHHHHHHHHHHHHHHHHHHhcCC-------CcccCchHHHHHHHHHHHhhhhccccccchhHHHHHHHHHHH
Q 048569 162 LEKEFGPVRIGIIYIFSAFVGSLAAALFVQN-------SPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVS 234 (394)
Q Consensus 162 lE~~~G~~r~~~lyl~sgi~g~l~~~l~~~~-------~~~vGaSGaifGLlga~~~~~~~~~~~~~~~~~~l~~l~~~~ 234 (394)
+|-.-+..---+=|++-|+.=.++..+...- ...+=||++.-++++.++.....+|+. .......+..
T Consensus 321 fE~~~~~~iHpiQYlLVGlAl~lFYLLLLSlSEHigF~~AYliAa~a~v~li~~Y~~~vl~~~k~-----g~~~~~~L~~ 395 (436)
T PRK11715 321 FELLKKLRIHPVQYLLVGLALVLFYLLLLSLSEHIGFTLAYLIAALACVLLIGFYLSAVLRSWKR-----GLLFAAALAA 395 (436)
T ss_pred HHHhcCceecHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcchH-----HHHHHHHHHH
Confidence 3544444445667888888777776665321 234557888899999998887776643 2222333334
Q ss_pred HHHHHHhhcCchhHHHHHH
Q 048569 235 TINFAIGLLPYIDNFSSIG 253 (394)
Q Consensus 235 ~~~l~~g~~p~vd~~aHLg 253 (394)
+..++.+++..-|+.--+|
T Consensus 396 LYg~Ly~lLq~EDyALL~G 414 (436)
T PRK11715 396 LYGVLYGLLQSEDYALLLG 414 (436)
T ss_pred HHHHHHHHHHHhHHHHHHH
Confidence 4444555554445543333
No 31
>PHA03237 envelope glycoprotein M; Provisional
Probab=35.19 E-value=3.3e+02 Score=28.34 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=28.2
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHH------HHHHHhcCCCcccCchHHHHHHHHHHHh
Q 048569 160 IHLEKEFGPVRIGIIYIFSAFVGS------LAAALFVQNSPVVCASGSLFGLLGAMLS 211 (394)
Q Consensus 160 ~~lE~~~G~~r~~~lyl~sgi~g~------l~~~l~~~~~~~vGaSGaifGLlga~~~ 211 (394)
+.+++..|..|-..+=+..++.|- +...+...++..+-.+..++|.+..+++
T Consensus 211 ~~lh~~v~~~RaV~vNl~~~~lgl~~lv~sL~l~m~~gNsF~v~~~~~v~~ai~~F~v 268 (424)
T PHA03237 211 PRLHRLAGPGRAVMINLVSGVYGLSLIIASLMLGMLLANSFHLTLWQTITVAIGVFVA 268 (424)
T ss_pred chhHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeehhHHHHHHHHHHHH
Confidence 345566677666554444433332 2222223466677777777777666653
No 32
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=34.43 E-value=6.5e+02 Score=27.49 Aligned_cols=42 Identities=26% Similarity=0.264 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHH
Q 048569 146 IHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAAL 188 (394)
Q Consensus 146 ~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~~~l 188 (394)
...+.+.....++| .+-+.+|++.+++.-.+-++.|.++..-
T Consensus 86 ~~~l~~av~~~~~G-~LSDlfGRr~~~i~g~~l~vvG~Iv~at 127 (599)
T PF06609_consen 86 AWTLASAVSFPFVG-RLSDLFGRRYFFIIGSLLGVVGSIVCAT 127 (599)
T ss_pred HHHHHHHHHHHhhH-HHHHHhcchHHHHHHHHHHHhHHHHhhc
Confidence 35555666666555 6678999999888888888888777653
No 33
>PF04892 VanZ: VanZ like family ; InterPro: IPR006976 This entry represents a conserved sequence region found in the VanZ protein and also several phosphotransbutyrylases. VanZ confers low-level resistance to the glycopeptide antibiotic teicoplanin (Te). Analysis of cytoplasmic peptidoglycan precursors, accumulated in the presence of ramoplanin, showed that VanZ-mediated Te resistance does not involve incorporation of a substituent of D-alanine into the peptidoglycan precursors [].
Probab=32.87 E-value=2.9e+02 Score=22.95 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=18.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHhc
Q 048569 245 YIDNFSSIGGFISGFLLGFTLLF 267 (394)
Q Consensus 245 ~vd~~aHLgG~l~G~l~g~~ll~ 267 (394)
-.|......|.+.|.++...+.+
T Consensus 106 ~~Dv~~n~~G~~lG~~l~~~~~~ 128 (133)
T PF04892_consen 106 IDDVLANTLGALLGYLLYRLIRK 128 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999998777653
No 34
>COG1296 AzlC Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]
Probab=32.49 E-value=3.3e+02 Score=26.01 Aligned_cols=61 Identities=15% Similarity=0.269 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHH
Q 048569 200 GSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPYIDNFSSIGGFISGFLLGFTL 265 (394)
Q Consensus 200 GaifGLlga~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~g~~p~vd~~aHLgG~l~G~l~g~~l 265 (394)
|--|.+-+.+++.....|+..+.....+..+....+...+ .+ ..+.-+.|.++|++.....
T Consensus 168 GldFal~a~Fi~L~~~~~k~~~~~~~~~~~~~~a~~~~~l---~~--~~~~v~~~~la~l~~~~l~ 228 (238)
T COG1296 168 GLDFALPALFIVLVIPQFKRRKTLLSVLASLVLALVALVL---FG--GPWAVLAGILAGLLAALLL 228 (238)
T ss_pred hHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH---Hh--HHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555554443333333222222222222 22 5556677788877766554
No 35
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=31.67 E-value=4.8e+02 Score=30.68 Aligned_cols=16 Identities=19% Similarity=0.112 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHhc
Q 048569 252 IGGFISGFLLGFTLLF 267 (394)
Q Consensus 252 LgG~l~G~l~g~~ll~ 267 (394)
++-++.++++..++..
T Consensus 115 ~~a~~~~~~~~~L~~~ 130 (1094)
T PRK02983 115 IGFAVHVVAIVLLVLA 130 (1094)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444555555444443
No 36
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=31.02 E-value=1.9e+02 Score=23.62 Aligned_cols=56 Identities=13% Similarity=0.037 Sum_probs=28.2
Q ss_pred HhhhhccccccchhHHHHHHHHHHHHHHHHHhhcCc-hhHHH-HHHHHHHHHHHHHHH
Q 048569 210 LSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLPY-IDNFS-SIGGFISGFLLGFTL 265 (394)
Q Consensus 210 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~g~~p~-vd~~a-HLgG~l~G~l~g~~l 265 (394)
++..+......++++.-++.+++-+++.++...+++ .+... -..|.++|+...-++
T Consensus 21 lVq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~ 78 (93)
T PF06946_consen 21 LVQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLF 78 (93)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHH
Confidence 344444433345555545445444555555555553 22222 245778887765554
No 37
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=30.79 E-value=9.5e+02 Score=28.31 Aligned_cols=40 Identities=13% Similarity=0.072 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHH-HHhhchhHHHHHHHHHHHHHHHHHHHh
Q 048569 150 LNLGCIVLVGIHL-EKEFGPVRIGIIYIFSAFVGSLAAALF 189 (394)
Q Consensus 150 ~Nm~~l~~~G~~l-E~~~G~~r~~~lyl~sgi~g~l~~~l~ 189 (394)
+..+.|++++..+ -+.-+.|...+++++.++..+++..+.
T Consensus 58 ~~g~~Ll~lA~gL~rr~r~Aw~~~~~~~~~~~~~~l~~~l~ 98 (1094)
T PRK02983 58 AWAFVLALLAAALRRRKRAAWWVLLAYLVLAALLNVALLAL 98 (1094)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334455555544 445677788888888887777776554
No 38
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.50 E-value=95 Score=31.55 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=25.4
Q ss_pred cCCCcccCchHHHHHHHHHHHhhhhccccccchh
Q 048569 190 VQNSPVVCASGSLFGLLGAMLSGLIRNWNFYTDK 223 (394)
Q Consensus 190 ~~~~~~vGaSGaifGLlga~~~~~~~~~~~~~~~ 223 (394)
..+...-=.||.++|+++.+++.++.-|+..+++
T Consensus 157 srn~vFYYssG~v~GilaSLl~Viflv~rf~PKk 190 (452)
T KOG3817|consen 157 SRNSVFYYSSGIVIGILASLLVVIFLVARFFPKK 190 (452)
T ss_pred ccCceEEEecccHHHHHHHHHHHHHHHHHhcccc
Confidence 3555666678999999999988877777766554
No 39
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=30.33 E-value=84 Score=29.81 Aligned_cols=40 Identities=23% Similarity=0.127 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcCCc
Q 048569 231 FFVSTINFAIGLLPYIDNFSSIGGFISGFLLGFTLLFTPQ 270 (394)
Q Consensus 231 ~~~~~~~l~~g~~p~vd~~aHLgG~l~G~l~g~~ll~~p~ 270 (394)
+..+++.+++|++-+.-++--+.|++.|++.+++++-|+-
T Consensus 36 l~~~~v~v~ig~l~~~~~~~~i~gi~~g~l~am~vl~rra 75 (224)
T PF13829_consen 36 LGPIAVFVLIGLLFGSWWYWLIIGILLGLLAAMIVLSRRA 75 (224)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555566665555577888899999999999885444
No 40
>PRK10263 DNA translocase FtsK; Provisional
Probab=29.99 E-value=2.6e+02 Score=33.39 Aligned_cols=14 Identities=7% Similarity=0.216 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 048569 62 SVFVILHVVAFAAT 75 (394)
Q Consensus 62 ~~li~i~v~vfi~~ 75 (394)
..++++.+++|++.
T Consensus 26 ~gIlLlllAlfL~l 39 (1355)
T PRK10263 26 LLILIVLFAVWLMA 39 (1355)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444455443
No 41
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=29.97 E-value=5e+02 Score=25.04 Aligned_cols=57 Identities=19% Similarity=0.397 Sum_probs=32.9
Q ss_pred ccCchHHHHHHHHHHHhhhhccccccc-hhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHh
Q 048569 195 VVCASGSLFGLLGAMLSGLIRNWNFYT-DKFAAIVLLFFVSTINFAIGLLPYIDNFSSIGGFISGFLLGFTLL 266 (394)
Q Consensus 195 ~vGaSGaifGLlga~~~~~~~~~~~~~-~~~~~l~~l~~~~~~~l~~g~~p~vd~~aHLgG~l~G~l~g~~ll 266 (394)
.+.....+.|++|+=+...+.+|+.+. ++... +.+ ... -++-.||++.|++.++.+.
T Consensus 53 ~l~~~~~l~gilGARl~~Vl~~~~~y~~~p~~i---------~~i---~~G---Gls~~GGligg~l~~~~~~ 110 (269)
T PRK12437 53 DLVLIAVPIAILGARIYYVLFEWDYYAQNPSQI---------FNI---WQG---GLAIHGGLIGAVLTGIIFA 110 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHhCHHHH---------HHH---hcC---CchHHHHHHHHHHHHHHHH
Confidence 445566677788887777777776543 22211 011 112 2333478888888777775
No 42
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=29.69 E-value=7e+02 Score=28.30 Aligned_cols=16 Identities=6% Similarity=0.162 Sum_probs=9.4
Q ss_pred ccCchHHHHHHHHHHH
Q 048569 195 VVCASGSLFGLLGAML 210 (394)
Q Consensus 195 ~vGaSGaifGLlga~~ 210 (394)
.+|.||-+...++...
T Consensus 261 lLggSGfLAVFVAGl~ 276 (810)
T TIGR00844 261 MLGVDDLLVSFFAGTA 276 (810)
T ss_pred HhccccHHHHHHHHHH
Confidence 5677776555544443
No 43
>PHA03239 envelope glycoprotein M; Provisional
Probab=29.31 E-value=6.2e+02 Score=26.44 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=27.4
Q ss_pred HHHHhhchhHHHHHHHHHHHHH------HHHHHHhcCCCcccCchHHHHHHHHHHHh
Q 048569 161 HLEKEFGPVRIGIIYIFSAFVG------SLAAALFVQNSPVVCASGSLFGLLGAMLS 211 (394)
Q Consensus 161 ~lE~~~G~~r~~~lyl~sgi~g------~l~~~l~~~~~~~vGaSGaifGLlga~~~ 211 (394)
.+++..|..|-..+=+..++.| ++...+...++..+-.+..++|.+..+++
T Consensus 218 ~lhrlvg~~RaV~vNl~~~~lgl~~lv~sLsl~m~~gNsF~v~~~~~v~~ai~~F~v 274 (429)
T PHA03239 218 DLHALIGAAKAVFLNLFCALFGIDHLILCLLGALIMALHFGLDIPKATSGALSMFIV 274 (429)
T ss_pred hHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeehhHHHHHHHHHHHH
Confidence 3556667766555444433333 12222223466677777777777666653
No 44
>COG1284 Uncharacterized conserved protein [Function unknown]
Probab=28.82 E-value=5.7e+02 Score=25.12 Aligned_cols=19 Identities=26% Similarity=0.460 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 048569 248 NFSSIGGFISGFLLGFTLL 266 (394)
Q Consensus 248 ~~aHLgG~l~G~l~g~~ll 266 (394)
..|-+||++.|+-+|+++-
T Consensus 115 l~aifgG~l~G~G~glv~r 133 (289)
T COG1284 115 LAALFGGLLLGIGLGLVFR 133 (289)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4788999999999998874
No 45
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=27.85 E-value=49 Score=30.90 Aligned_cols=38 Identities=21% Similarity=0.229 Sum_probs=27.5
Q ss_pred ccccccCcccccCCCCCCCchhHHHHHHHHHHHHHHHHHHhc
Q 048569 38 EYHKAKAPFFKSRGRKRGTDTWVISVFVILHVVAFAATMAVN 79 (394)
Q Consensus 38 ~y~~~~~~~~~~~~~~~~~~p~vt~~li~i~v~vfi~~~~~~ 79 (394)
.||.+--..-+ .|+.-.|.|++++++|+++|++..++-
T Consensus 136 RYHEEQiWSDK----IRr~STwgT~~lmgvNvllFl~~~~~~ 173 (207)
T PF05546_consen 136 RYHEEQIWSDK----IRRASTWGTWGLMGVNVLLFLVAQLLV 173 (207)
T ss_pred HHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45554444433 344678999999999999999987764
No 46
>PF14241 DUF4341: Domain of unknown function (DUF4341)
Probab=27.12 E-value=2e+02 Score=21.37 Aligned_cols=34 Identities=32% Similarity=0.414 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhcCCCcccCchHHHHHHHHH
Q 048569 175 YIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGA 208 (394)
Q Consensus 175 yl~sgi~g~l~~~l~~~~~~~vGaSGaifGLlga 208 (394)
|+.+.+.|.....++.-+....|+||.+.+++..
T Consensus 6 l~GG~lIGla~~~ll~~~Gri~GiSGil~~~~~~ 39 (62)
T PF14241_consen 6 LIGGLLIGLAASLLLLLNGRIAGISGILSGLLSP 39 (62)
T ss_pred HHHHHHHHHHHHHHHHHcCcceehHHHHHHHhCC
Confidence 4455556655555666678899999998887655
No 47
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=24.89 E-value=1e+03 Score=27.22 Aligned_cols=124 Identities=15% Similarity=0.132 Sum_probs=69.0
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHhh-chhHHHHHHHHHHHHHHHHHHHhcCCCcccCchHHHHHHHHHHHhhhhccccc
Q 048569 141 LHAGFIHLILNLGCIVLVGIHLEKEF-GPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRNWNF 219 (394)
Q Consensus 141 lH~g~~HLl~Nm~~l~~~G~~lE~~~-G~~r~~~lyl~sgi~g~l~~~l~~~~~~~vGaSGaifGLlga~~~~~~~~~~~ 219 (394)
+-+-+.=++.++.-...||..+++.- |.....-..+.+++.|.+.+.+-.+.-.-+|.+|.+.=..-++.-. ......
T Consensus 363 la~~lfiYfa~l~P~ItFG~ll~~~Tdg~~~v~E~L~stal~GiifslfggQPLlIlg~TgP~lVfe~~lf~f-~~~~~~ 441 (876)
T KOG1172|consen 363 LAATLFIYFACLLPAITFGGLLGEATDGLIGVVETLLSTALCGIIFSLFGGQPLLILGVTGPLLVFEKALFKF-CKDNGL 441 (876)
T ss_pred chHHHHHHHHhhhhHhhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHHH-HhhCCC
Confidence 44456667788888889999887754 4444444555555665555544444456789998876544444322 111111
Q ss_pred cchhHHHHHHHHHHHHHHH----HHhhcCchhHHHHHHHHHHHHHHHHHHhc
Q 048569 220 YTDKFAAIVLLFFVSTINF----AIGLLPYIDNFSSIGGFISGFLLGFTLLF 267 (394)
Q Consensus 220 ~~~~~~~l~~l~~~~~~~l----~~g~~p~vd~~aHLgG~l~G~l~g~~ll~ 267 (394)
.-..++.+ +.++.++.. +.....-+.++....+=++|++++++|+.
T Consensus 442 dyl~~r~w--VglW~~~l~illaa~~as~lv~~~TRfteEiF~~LIs~iFi~ 491 (876)
T KOG1172|consen 442 DYLAFRAW--VGLWTAFLLILLAATNASSLVKYITRFTEEIFGLLISLIFIY 491 (876)
T ss_pred chhhHHHH--HHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 11122222 222222111 11122346677888888999999988863
No 48
>PRK10490 sensor protein KdpD; Provisional
Probab=24.00 E-value=2.9e+02 Score=31.55 Aligned_cols=31 Identities=19% Similarity=0.430 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q 048569 155 IVLVGIHLEKEFGPVRIGIIYIFSAFVGSLA 185 (394)
Q Consensus 155 l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~ 185 (394)
...++..+...++.....++|+++.++.++.
T Consensus 412 ~t~l~~~l~~~l~~~ni~mlyll~Vll~A~~ 442 (895)
T PRK10490 412 ITLIAMQWLPAFDAANLVMLYLLGVVVVALF 442 (895)
T ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHHHHHH
Confidence 3444556667788888889999887776554
No 49
>COG4452 CreD Inner membrane protein involved in colicin E2 resistance [Defense mechanisms]
Probab=23.44 E-value=8.3e+02 Score=25.22 Aligned_cols=101 Identities=19% Similarity=0.169 Sum_probs=58.6
Q ss_pred HHHHhhchhHHHHHHHHHHHHHHHHHHHhcCC-------CcccCchHHHHHHHHHHHhhhhccccccchhHHHHHHHHHH
Q 048569 161 HLEKEFGPVRIGIIYIFSAFVGSLAAALFVQN-------SPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFV 233 (394)
Q Consensus 161 ~lE~~~G~~r~~~lyl~sgi~g~l~~~l~~~~-------~~~vGaSGaifGLlga~~~~~~~~~~~~~~~~~~l~~l~~~ 233 (394)
.+|-.-|..---.-|++-|+.-.++..+...- ...+=||.+..++.+.++.....+|+.- ....+.+.
T Consensus 314 ifE~lt~~~~Hp~QY~LVGlsLv~FYLLLLaLsEHiGFt~Ayl~aSla~a~l~~~YL~avl~~~~~g-----~~f~~~L~ 388 (443)
T COG4452 314 IFEVLTGQRLHPMQYLLVGLSLVMFYLLLLALSEHIGFTVAYLIASLAGALLNGIYLQAVLRGWRNG-----LLFFLALL 388 (443)
T ss_pred hhhhhcccccchHHHHHHHHHHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----HHHHHHHH
Confidence 34666666666677888887766666554322 2355688888899998888877776431 22333344
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHHHH-HHHHHHh
Q 048569 234 STINFAIGLLPYIDNFSSIGGFISGF-LLGFTLL 266 (394)
Q Consensus 234 ~~~~l~~g~~p~vd~~aHLgG~l~G~-l~g~~ll 266 (394)
.+..++++++..-|+.--+|..+.=. +.+..++
T Consensus 389 ~lygvm~glL~~edyALL~Gs~llf~~LaavM~l 422 (443)
T COG4452 389 LLYGVMFGLLNSEDYALLLGSLLLFVALAAVMFL 422 (443)
T ss_pred HHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHhe
Confidence 45555666665555544444333222 3344444
No 50
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=23.42 E-value=2.9e+02 Score=22.81 Aligned_cols=42 Identities=17% Similarity=0.156 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhch-hHHHHHHHHHHHHHHHHHH
Q 048569 146 IHLILNLGCIVLVGIHLEKEFGP-VRIGIIYIFSAFVGSLAAA 187 (394)
Q Consensus 146 ~HLl~Nm~~l~~~G~~lE~~~G~-~r~~~lyl~sgi~g~l~~~ 187 (394)
++++.-.+.-.++|.-+.+.+|+ ..+.+++++.|++.++..+
T Consensus 50 ~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~n~ 92 (100)
T TIGR02230 50 WSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCLNA 92 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 46666677778899999999986 3455667777777666554
No 51
>TIGR00544 lgt prolipoprotein diacylglyceryl transferase. The conversion of lipoprotein precursors into lipoproteins consists of three steps. First, the enzyme described by this model transfers a diacylglyceryl moiety from phosphatidylglycerol to the side chain of a Cys that will become the new N-terminus. Second, the signal peptide is removed by signal peptidase II. Finally, the free amino group of the new N-terminal Cys is acylated by apolipoprotein N-acyltransferase.
Probab=22.46 E-value=6.4e+02 Score=24.47 Aligned_cols=18 Identities=22% Similarity=0.525 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 048569 249 FSSIGGFISGFLLGFTLL 266 (394)
Q Consensus 249 ~aHLgG~l~G~l~g~~ll 266 (394)
++--||++.|++.++++.
T Consensus 99 ls~~GGligg~l~~~~~~ 116 (278)
T TIGR00544 99 MAIHGGLIGAIIAGIIFS 116 (278)
T ss_pred cchhHHHHHHHHHHHHHH
Confidence 444568888888877776
No 52
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=21.86 E-value=6.9e+02 Score=27.60 Aligned_cols=44 Identities=18% Similarity=0.064 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcC
Q 048569 225 AAIVLLFFVSTINFAIGLLPYIDNFSSIGGFISGFLLGFTLLFT 268 (394)
Q Consensus 225 ~~l~~l~~~~~~~l~~g~~p~vd~~aHLgG~l~G~l~g~~ll~~ 268 (394)
.++..++.++++..........-+.+-+||+++|++.++++-+.
T Consensus 72 Aala~~v~yl~~~~~~~~~~~~~~~gvfgGIi~G~i~a~l~nkf 115 (648)
T PRK10255 72 AALAGAVGYFVLTKAMVTINPEINMGVLAGIITGLVGGAAYNRW 115 (648)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhchhhhhhhHHHHHHHHHHHHh
Confidence 33444444444333332221223566799999999999887543
No 53
>PF04955 HupE_UreJ: HupE / UreJ protein; InterPro: IPR007038 This family of proteins are hydrogenase/urease accessory proteins. They contain many conserved histidines that are likely to be involved in nickel binding.
Probab=21.66 E-value=6.1e+02 Score=22.99 Aligned_cols=70 Identities=24% Similarity=0.300 Sum_probs=36.0
Q ss_pred heeccccc--ccHHHHHHHHHHHHHHHHHHHHhhch--hHHHHHHHHHHHHHHHHHHHhcC-C--CcccCchHHHHHHHH
Q 048569 135 LFTCPWLH--AGFIHLILNLGCIVLVGIHLEKEFGP--VRIGIIYIFSAFVGSLAAALFVQ-N--SPVVCASGSLFGLLG 207 (394)
Q Consensus 135 liTs~FlH--~g~~HLl~Nm~~l~~~G~~lE~~~G~--~r~~~lyl~sgi~g~l~~~l~~~-~--~~~vGaSGaifGLlg 207 (394)
=+.+-+.| .|+.|++.- +.+ |...-+.-++ +.....|+.+.+.|.++.....+ . +..+-+|-.++|++.
T Consensus 21 gf~sGl~HPl~GlDHLl~m-lav---Gl~aa~~~~~~~~~~p~~f~~~m~~G~~lg~~g~~~p~~E~~Ia~Sv~~~G~ll 96 (180)
T PF04955_consen 21 GFLSGLLHPLTGLDHLLAM-LAV---GLWAAQQGGRARWALPLAFVAAMLVGAALGLAGVPLPGVETGIAASVLVLGLLL 96 (180)
T ss_pred hHHHHhhcccccHHHHHHH-HHH---HHHHHHhccchHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHH
Confidence 45556677 499999873 333 3332333222 33345666666666666554322 1 233445555566544
Q ss_pred H
Q 048569 208 A 208 (394)
Q Consensus 208 a 208 (394)
+
T Consensus 97 ~ 97 (180)
T PF04955_consen 97 A 97 (180)
T ss_pred H
Confidence 4
No 54
>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=21.13 E-value=1.1e+02 Score=30.56 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=19.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhc
Q 048569 244 PYIDNFSSIGGFISGFLLGFTLLF 267 (394)
Q Consensus 244 p~vd~~aHLgG~l~G~l~g~~ll~ 267 (394)
+.+++.+|++|.+.|+..+...++
T Consensus 246 ~~~~fil~~~g~~~~~~~~~~~~~ 269 (316)
T KOG2289|consen 246 FLLGFVLHIGGQLGGITIGLIVLR 269 (316)
T ss_pred cchhHHhhhccceeEEeccceeee
Confidence 567899999999999988877643
No 55
>PF07456 Hpre_diP_synt_I: Heptaprenyl diphosphate synthase component I; InterPro: IPR010898 This family contains component I of bacterial heptaprenyl diphosphate synthase (2.5.1.30 from EC) (approximately 170 residues long). This is one of the two dissociable subunits that form the enzyme, both of which are required for the catalysis of the biosynthesis of the side chain of menaquinone-7 [].
Probab=21.11 E-value=5.8e+02 Score=22.53 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=9.7
Q ss_pred ccCchHHHHHHHHHHHh
Q 048569 195 VVCASGSLFGLLGAMLS 211 (394)
Q Consensus 195 ~vGaSGaifGLlga~~~ 211 (394)
..+.+|++..++...+.
T Consensus 69 ~~Sl~Ggl~S~~vM~ll 85 (148)
T PF07456_consen 69 LFSLAGGLLSLLVMALL 85 (148)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566666666555544
No 56
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=20.54 E-value=7.9e+02 Score=26.37 Aligned_cols=126 Identities=13% Similarity=0.127 Sum_probs=0.0
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhcCCCcccCchHHHHHHHHHHHhhhhcccc
Q 048569 139 PWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRNWN 218 (394)
Q Consensus 139 ~FlH~g~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~~~l~~~~~~~vGaSGaifGLlga~~~~~~~~~~ 218 (394)
.|+..|+-.-..-++.-.++...+-..-.+.+....++.+.+.|.+++.++. ....-..+| .-.+..++...++.-+-
T Consensus 356 ~Wi~t~W~~G~~~~~~~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~-~~vlP~~~~-f~~L~l~l~~~l~~~~~ 433 (650)
T PF04632_consen 356 FWIATGWPSGATAVMMAAVVSSLFATLDNPAPALRLFLIGALLGAVLAFLYL-FFVLPHLDG-FPLLALVLAPFLFLGGL 433 (650)
T ss_pred HHHHcCCChhHHHHHHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHHHHHH-HHhhhccCc-HHHHHHHHHHHHHHHHH
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhh-----cCchhHHHHHHHHHHHHHHHHHHh
Q 048569 219 FYTDKFAAIVLLFFVSTINFAIGL-----LPYIDNFSSIGGFISGFLLGFTLL 266 (394)
Q Consensus 219 ~~~~~~~~l~~l~~~~~~~l~~g~-----~p~vd~~aHLgG~l~G~l~g~~ll 266 (394)
...+|......+...+......+. .......-..-|.+.|.+++.+..
T Consensus 434 ~~~~p~~~~~g~~~~v~f~~~~~~~n~~~~d~~~f~n~~la~l~G~~~a~l~~ 486 (650)
T PF04632_consen 434 LMARPRTAYIGLGFAVFFLLLLGPGNPYSYDFATFLNRALAILLGIVIAALVF 486 (650)
T ss_pred HHcCchHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
No 57
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=20.31 E-value=4.8e+02 Score=27.22 Aligned_cols=75 Identities=17% Similarity=0.170 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh-----cCCCcccCchHHHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHHHHhhcC
Q 048569 170 RIGIIYIFSAFVGSLAAALF-----VQNSPVVCASGSLFGLLGAMLSGLIRNWNFYTDKFAAIVLLFFVSTINFAIGLLP 244 (394)
Q Consensus 170 r~~~lyl~sgi~g~l~~~l~-----~~~~~~vGaSGaifGLlga~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~g~~p 244 (394)
-|..-|++++....++-.++ ......++..|.+.++.+.+.+.+-. ..-.-.+..+.+++++.+++-+.-
T Consensus 350 ~F~~AYliAa~a~i~Li~~Y~~~vl~~~k~~~~~~~~L~~LY~~Ly~lLq~-----EdyALL~GSl~LF~iLa~vM~~TR 424 (430)
T PF06123_consen 350 GFNLAYLIAALACIGLISLYLSSVLKSWKRGLIFAGLLAALYGFLYVLLQS-----EDYALLMGSLLLFIILALVMYLTR 424 (430)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHheee
Confidence 35566777666554443333 22234555556666665555443211 111112223444455555555566
Q ss_pred chhHH
Q 048569 245 YIDNF 249 (394)
Q Consensus 245 ~vd~~ 249 (394)
++||.
T Consensus 425 kiDWy 429 (430)
T PF06123_consen 425 KIDWY 429 (430)
T ss_pred ccccc
Confidence 77764
Done!