Query 048569
Match_columns 394
No_of_seqs 376 out of 1922
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 18:43:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048569.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048569hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nr9_A Protein GLPG homolog; i 100.0 2E-30 7E-35 237.8 12.1 182 55-270 6-188 (196)
2 2xov_A Rhomboid protease GLPG; 100.0 3.8E-29 1.3E-33 226.6 19.5 176 57-266 3-179 (181)
3 3arc_J Photosystem II reaction 12.1 2.3E+02 0.008 18.4 3.3 24 300-324 9-32 (40)
4 2h88_C Succinate dehydrogenase 10.3 1E+02 0.0034 25.6 1.5 20 133-152 89-110 (140)
5 1zoy_C Large cytochrome bindin 10.0 84 0.0029 26.1 0.9 20 133-152 89-110 (140)
6 4aps_A DI-OR tripeptide H+ sym 9.2 1.1E+03 0.037 21.9 12.5 41 147-187 63-103 (491)
7 3dh4_A Sodium/glucose cotransp 8.4 1.2E+03 0.042 22.9 9.1 42 222-263 423-466 (530)
8 4dve_A Biotin transporter BIOY 7.8 6.4E+02 0.022 22.0 5.8 56 153-209 53-110 (198)
9 2ksf_A Sensor protein KDPD; me 7.6 7.7E+02 0.026 18.9 7.9 39 166-210 28-66 (107)
10 2hlg_A Fruit-specific protein; 7.1 1E+02 0.0036 19.7 0.2 8 328-335 16-23 (39)
No 1
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.97 E-value=2e-30 Score=237.85 Aligned_cols=182 Identities=16% Similarity=0.270 Sum_probs=133.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhccccccCCCchhhhhhcccccccCCCCCCCCCChhHHHHhcchhhhhhhccCCcch
Q 048569 55 GTDTWVISVFVILHVVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISENPLLGPSASTLDQMGALRQTFLKEYHHTWR 134 (394)
Q Consensus 55 ~~~p~vt~~li~i~v~vfi~~~~~~~~~~~~~~~~~~~~~~~~sf~p~~~np~lgps~~~L~~~Gal~~~~i~~~~q~wR 134 (394)
.+.|++|..++++|+++|+++...++ +.+.++.+..++.+ .++||||
T Consensus 6 ~~~~pvt~~li~~~v~vfll~~~~~~--------------------------------~~~~~~~~~~p~~~-~~~~~wr 52 (196)
T 2nr9_A 6 AQQGKITLILTALCVLIYIAQQLGFE--------------------------------DDIMYLMHYPAYEE-QDSEVWR 52 (196)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTTCH--------------------------------HHHHHHHSCCCSGG-GGGCTTH
T ss_pred cccccHHHHHHHHHHHHHHHHHHcCc--------------------------------HHHHHhhcCCHhhc-ccCCcHH
Confidence 34566999999999999999865321 11223333333333 4589999
Q ss_pred heecccccccHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhcCCCcccCchHHHHHHHHHHHhhhh
Q 048569 135 LFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLI 214 (394)
Q Consensus 135 liTs~FlH~g~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~~~l~~~~~~~vGaSGaifGLlga~~~~~~ 214 (394)
++|++|+|.|+.|+++||+.++.+|..+|+.+|++|++.+|+++|++|++++.++.+.. ++||||++||++++.+..-.
T Consensus 53 l~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~G~~~~l~~yl~~~~~~~l~~~~~~~~~-~vGaSGai~gl~g~~~~~~~ 131 (196)
T 2nr9_A 53 YISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPA-FFGLSGVVYAVLGYVFIRDK 131 (196)
T ss_dssp HHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC-CCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHhcCCC-eeeHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887654 99999999999998765433
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHh-hcCchhHHHHHHHHHHHHHHHHHHhcCCc
Q 048569 215 RNWNFYTDKFAAIVLLFFVSTINFAIG-LLPYIDNFSSIGGFISGFLLGFTLLFTPQ 270 (394)
Q Consensus 215 ~~~~~~~~~~~~l~~l~~~~~~~l~~g-~~p~vd~~aHLgG~l~G~l~g~~ll~~p~ 270 (394)
.+.+....+.+....+.+.+++.+... ..+++|+.||+||+++|++++..+.++++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~~~~ 188 (196)
T 2nr9_A 132 LNHHLFDLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSKLRK 188 (196)
T ss_dssp SSTTSCCCCCSSTTTTTTTTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhhcchHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhccc
Confidence 222211111111111112222232211 22489999999999999999998875443
No 2
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.96 E-value=3.8e-29 Score=226.61 Aligned_cols=176 Identities=20% Similarity=0.196 Sum_probs=130.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHhccccccCCCchhhhhhcccccccCCCCCCCCCChhHHHHhcchhhhhhhccCCcchhe
Q 048569 57 DTWVISVFVILHVVAFAATMAVNDCWRNSHGNCALKMLGRLSFQPISENPLLGPSASTLDQMGALRQTFLKEYHHTWRLF 136 (394)
Q Consensus 57 ~p~vt~~li~i~v~vfi~~~~~~~~~~~~~~~~~~~~~~~~sf~p~~~np~lgps~~~L~~~Gal~~~~i~~~~q~wRli 136 (394)
.|.+|..++++|+++|+++...++ +.+.++.+..++ ...++||||++
T Consensus 3 ~~pvt~~li~~~v~vf~~~~~~~~--------------------------------~~~~~~~~~~p~-~~~~~~~wrl~ 49 (181)
T 2xov_A 3 AGPVTWVMMIACVVVFIAMQILGD--------------------------------QEVMLWLAWPFD-PTLKFEFWRYF 49 (181)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCH--------------------------------HHHHHHHSSCCS-GGGTTCTTHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCc--------------------------------HHHHHhhcCChh-hccCCCCHHHH
Confidence 456999999999999999876421 111222222222 23459999999
Q ss_pred ecccccccHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhcCCCcccCchHHHHHHHHHHHhhhhcc
Q 048569 137 TCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRN 216 (394)
Q Consensus 137 Ts~FlH~g~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~~~l~~~~~~~vGaSGaifGLlga~~~~~~~~ 216 (394)
|++|+|.|+.|+++||+.++.+|..+|+.+|++|++.+|+.+|+.|++++.++.+.. ++||||++||++++..+....+
T Consensus 50 T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~~~fl~~yl~~~i~~~l~~~~~~~~~-~vGaSGai~gl~g~~~~~~~~~ 128 (181)
T 2xov_A 50 THALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPW-FGGLSGVVYALMGYVWLRGERD 128 (181)
T ss_dssp HGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC-CCCSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCC-ceeHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999887654 9999999999999876532222
Q ss_pred cccc-chhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHh
Q 048569 217 WNFY-TDKFAAIVLLFFVSTINFAIGLLPYIDNFSSIGGFISGFLLGFTLL 266 (394)
Q Consensus 217 ~~~~-~~~~~~l~~l~~~~~~~l~~g~~p~vd~~aHLgG~l~G~l~g~~ll 266 (394)
++.. .-+.+......+.++..+...+.+++|+.||+||+++|++++..+-
T Consensus 129 p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~ 179 (181)
T 2xov_A 129 PQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVDS 179 (181)
T ss_dssp GGGSCCCCHHHHHHHHHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCceeeeHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHh
Confidence 2111 1122222222222233322112368999999999999999998774
No 3
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=12.11 E-value=2.3e+02 Score=18.42 Aligned_cols=24 Identities=8% Similarity=0.077 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcC
Q 048569 300 IMRSVSLLLFVLVILGFLAAVLQGL 324 (394)
Q Consensus 300 ~l~~v~l~~~~~li~~~~~~~~~~~ 324 (394)
-+|+++.+.- ..+++++-++||+.
T Consensus 9 PLWlvgtv~G-~~vi~~~giFfyGs 32 (40)
T 3arc_J 9 PLWIVATVAG-MGVIVIVGLFFYGA 32 (40)
T ss_dssp CHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred cEEeeeeehh-hhhhheeeEEEeec
Confidence 4677776652 23334545677653
No 4
>2h88_C Succinate dehydrogenase cytochrome B, large subun; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 2h89_C* 1yq3_C* 1yq4_C* 2fbw_C* 2wqy_C*
Probab=10.29 E-value=1e+02 Score=25.63 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=14.0
Q ss_pred chheeccccc--ccHHHHHHHH
Q 048569 133 WRLFTCPWLH--AGFIHLILNL 152 (394)
Q Consensus 133 wRliTs~FlH--~g~~HLl~Nm 152 (394)
|-+..+.+.| .|+-|++..+
T Consensus 89 ~~~~~al~yH~~nGiRHL~wD~ 110 (140)
T 2h88_C 89 FALVFPLSYHTWNGIRHLVWDM 110 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhHHHHHHHh
Confidence 3455566777 4899998884
No 5
>1zoy_C Large cytochrome binding protein, FAD-binding protein; succinate, ubiquinone oxidoreductase, mitochondrial respiratory complex II; HET: FAD HEM EPH UQ1; 2.40A {Sus scrofa} PDB: 1zp0_C* 3abv_C* 3ae1_C* 3ae2_C* 3ae3_C* 3ae4_C* 3ae5_C* 3ae6_C* 3ae7_C* 3ae8_C* 3ae9_C* 3aea_C* 3aeb_C* 3aec_C* 3aed_C* 3aee_C* 3aef_C* 3aeg_C* 3sfd_C* 3sfe_C*
Probab=10.00 E-value=84 Score=26.08 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=13.9
Q ss_pred chheeccccc--ccHHHHHHHH
Q 048569 133 WRLFTCPWLH--AGFIHLILNL 152 (394)
Q Consensus 133 wRliTs~FlH--~g~~HLl~Nm 152 (394)
|-+..+.+.| .|+-|++..+
T Consensus 89 ~~~~~al~yH~~nGiRHL~wD~ 110 (140)
T 1zoy_C 89 FGIVFPLMYHTWNGIRHLIWDL 110 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhHHHHHHHh
Confidence 3445566777 4899998884
No 6
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=9.18 E-value=1.1e+03 Score=21.95 Aligned_cols=41 Identities=10% Similarity=-0.031 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH
Q 048569 147 HLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAA 187 (394)
Q Consensus 147 HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~~~ 187 (394)
..+..++.....|...+|.+|.++.+.+-.+....+.++..
T Consensus 63 ~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~ 103 (491)
T 4aps_A 63 YASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLA 103 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH
Confidence 34555666666676665548999887666555555554443
No 7
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=8.42 E-value=1.2e+03 Score=22.94 Aligned_cols=42 Identities=7% Similarity=0.025 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcC-chh-HHHHHHHHHHHHHHHH
Q 048569 222 DKFAAIVLLFFVSTINFAIGLLP-YID-NFSSIGGFISGFLLGF 263 (394)
Q Consensus 222 ~~~~~l~~l~~~~~~~l~~g~~p-~vd-~~aHLgG~l~G~l~g~ 263 (394)
++..++..++.-++..+...+.+ ... ...-+-|++..++..+
T Consensus 423 ~~~gA~~g~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 466 (530)
T 3dh4_A 423 TSKGAIIGVVASIPFALFLKFMPLSMPFMDQMLYTLLFTMVVIA 466 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHH
Confidence 34444444444334444333332 221 2233444555544433
No 8
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=7.83 E-value=6.4e+02 Score=22.01 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhc-CCCcccCchHH-HHHHHHHH
Q 048569 153 GCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFV-QNSPVVCASGS-LFGLLGAM 209 (394)
Q Consensus 153 ~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~~~l~~-~~~~~vGaSGa-ifGLlga~ 209 (394)
+.....|..+-.+.|.... .+|++-|..|-=+..-.. .-....|++|. +.|.+.+.
T Consensus 53 l~V~LaG~~LG~r~G~lsv-~lYlllG~~GlPVFagg~gG~~~l~gPTgGYLiGF~~aA 110 (198)
T 4dve_A 53 MGIMMAGGLLGPKYGTISV-GAFLALALIGLPVLTGGNGGAASFLGPSGGYRIAWLFTP 110 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHTCCCBTTTBCCSGGGGSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHChhHHHHHH-HHHHHHHHHcCccccCCCCchhHHhcchhHHHHHHHHHH
Confidence 4445556666667776655 577777766522111111 11346777766 66654443
No 9
>2ksf_A Sensor protein KDPD; methods development, histidine kinase receptor, membrane domain, four-helical bundle, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=7.59 E-value=7.7e+02 Score=18.94 Aligned_cols=39 Identities=15% Similarity=0.319 Sum_probs=23.4
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHhcCCCcccCchHHHHHHHHHHH
Q 048569 166 FGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAML 210 (394)
Q Consensus 166 ~G~~r~~~lyl~sgi~g~l~~~l~~~~~~~vGaSGaifGLlga~~ 210 (394)
.+......+|+.+.+..++.. ...+ |.-.++.+.+..-.
T Consensus 28 ~~~~n~~l~fll~Vv~~A~~~----g~~p--a~~aa~ls~l~~nf 66 (107)
T 2ksf_A 28 FDAANLVMLYLLGVVVVALFY----GRWP--SVVATVINVVSFDL 66 (107)
T ss_dssp TSSCCSSHHHHHHHHHHHHHH----SSCC--CSHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHh----CcHH--HHHHHHHHHHHHHH
Confidence 788888889988887765443 2222 45555555444443
No 10
>2hlg_A Fruit-specific protein; beta antiparallel, plant protein; NMR {Lycopersicon esculentum}
Probab=7.10 E-value=1e+02 Score=19.70 Aligned_cols=8 Identities=38% Similarity=1.190 Sum_probs=6.5
Q ss_pred CCCCccce
Q 048569 328 QYCKWCKY 335 (394)
Q Consensus 328 ~~C~~C~y 335 (394)
..|+||+.
T Consensus 16 TlC~wCK~ 23 (39)
T 2hlg_A 16 TLCQFCKE 23 (39)
T ss_dssp SSCCEEEE
T ss_pred Eeccccee
Confidence 57999985
Done!