BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048572
         (234 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2G80|A Chain A, Crystal Structure Of Utr4 Protein (Unknown Transcript 4
           Protein) (Yel038w) From Saccharomyces Cerevisiae At 2.28
           A Resolution
 pdb|2G80|B Chain B, Crystal Structure Of Utr4 Protein (Unknown Transcript 4
           Protein) (Yel038w) From Saccharomyces Cerevisiae At 2.28
           A Resolution
 pdb|2G80|C Chain C, Crystal Structure Of Utr4 Protein (Unknown Transcript 4
           Protein) (Yel038w) From Saccharomyces Cerevisiae At 2.28
           A Resolution
 pdb|2G80|D Chain D, Crystal Structure Of Utr4 Protein (Unknown Transcript 4
           Protein) (Yel038w) From Saccharomyces Cerevisiae At 2.28
           A Resolution
          Length = 253

 Score = 28.1 bits (61), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 4/29 (13%)

Query: 136 FLFDYIQNPNASDHDLPDLIKYRIRFIDG 164
            LF Y+Q+PNA  HD  DL  Y    IDG
Sbjct: 153 LLFGYVQDPNAPAHDSLDLNSY----IDG 177


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.144    0.448 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,305,786
Number of Sequences: 62578
Number of extensions: 139913
Number of successful extensions: 229
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 228
Number of HSP's gapped (non-prelim): 1
length of query: 234
length of database: 14,973,337
effective HSP length: 96
effective length of query: 138
effective length of database: 8,965,849
effective search space: 1237287162
effective search space used: 1237287162
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)