BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048572
         (234 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8IZC6|CORA1_HUMAN Collagen alpha-1(XXVII) chain OS=Homo sapiens GN=COL27A1 PE=2 SV=1
          Length = 1860

 Score = 36.2 bits (82), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 10  SSEQQQPPISSAQSSTSPTSITPTAT-TPATSIPPSSSTSLSRRALSQTLTSTANLANLL 68
           +S  + PP ++  SS +PT  +  +T  PAT +PP+S TS  R A +     +A   +  
Sbjct: 476 TSTHKPPPFTALSSSPAPTPGSTRSTRPPATMVPPTSGTSTPRTAPAVPTPGSAPTGSKK 535

Query: 69  PTGT 72
           P G+
Sbjct: 536 PIGS 539


>sp|A2R9H9|INO80_ASPNC Putative DNA helicase ino80 OS=Aspergillus niger (strain CBS 513.88
           / FGSC A1513) GN=ino80 PE=3 SV=1
          Length = 1697

 Score = 35.4 bits (80), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 1   MSLRQRPTTSSEQQQPPISSAQSSTSPTSITPTATTPAT-SIPPSSSTSLSRRALSQTLT 59
           MS     +  +E++ PP   + +  +PT + P AT   + S PP +S + S+++  +   
Sbjct: 182 MSFASILSGPTEERAPPPRQSSAEATPTPLAPAATAQTSLSPPPVASAATSQKSKDRAPA 241

Query: 60  STANLANL 67
            TA+L  L
Sbjct: 242 LTASLPRL 249


>sp|Q02817|MUC2_HUMAN Mucin-2 OS=Homo sapiens GN=MUC2 PE=1 SV=2
          Length = 5179

 Score = 33.1 bits (74), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 22/42 (52%)

Query: 28   TSITPTATTPATSIPPSSSTSLSRRALSQTLTSTANLANLLP 69
            TS  P A    ++ PP SST  + R+ S  LT +  L + LP
Sbjct: 4201 TSTAPIAELTTSNPPPESSTPQTSRSTSSPLTESTTLLSTLP 4242


>sp|Q9VQK0|U518_DROME UPF0518 protein CG3558 OS=Drosophila melanogaster GN=CG3558 PE=1
           SV=1
          Length = 1041

 Score = 32.7 bits (73), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 2   SLRQRPTTSSEQQQPPISSAQSSTSPTSITPTATTPATSIPPSSSTSLSRRALSQTLTS 60
           S +Q+  T+S QQQ  + SA ++ S  + TP   TP ++  P   +   RR++S+++TS
Sbjct: 802 SQQQQMVTNSGQQQGQLRSAYATLS--AATPVQATPTSAYDPFKRSDNKRRSISKSITS 858


>sp|B4NXB9|U518_DROYA UPF0518 protein GE18198 OS=Drosophila yakuba GN=GE18198 PE=3 SV=1
          Length = 1050

 Score = 32.3 bits (72), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 2   SLRQRPTTSSEQQQPPISSAQSSTSPTSITPTATTPATSIPPSSSTSLSRRALSQTLTS 60
           S +Q+  T+S QQQ  + SA ++ S  + TP   TP ++  P   +   RR++S+++TS
Sbjct: 810 SQQQQMATNSGQQQGQLRSAYATLS--AATPVQATPTSAYDPFKRSDNKRRSISKSITS 866


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.133    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,904,151
Number of Sequences: 539616
Number of extensions: 3174023
Number of successful extensions: 26801
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 282
Number of HSP's that attempted gapping in prelim test: 20500
Number of HSP's gapped (non-prelim): 5527
length of query: 234
length of database: 191,569,459
effective HSP length: 114
effective length of query: 120
effective length of database: 130,053,235
effective search space: 15606388200
effective search space used: 15606388200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)