Query 048572
Match_columns 234
No_of_seqs 105 out of 122
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 10:46:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048572.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048572hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05078 DUF679: Protein of un 100.0 3.3E-85 7.2E-90 556.2 14.6 169 58-227 1-170 (170)
2 PF13127 DUF3955: Protein of u 57.7 12 0.00025 27.7 2.8 34 93-127 2-36 (63)
3 PF13511 DUF4124: Domain of un 42.2 15 0.00032 25.4 1.2 17 114-131 13-31 (60)
4 PF10894 DUF2689: Protein of u 37.3 11 0.00024 28.1 -0.0 9 162-170 21-29 (61)
5 PRK13724 conjugal transfer pro 31.6 15 0.00034 27.6 -0.0 9 162-170 21-29 (65)
6 PF12273 RCR: Chitin synthesis 28.0 27 0.00057 28.2 0.8 23 94-116 1-23 (130)
7 PF15601 Imm42: Immunity prote 27.5 28 0.0006 29.4 0.8 23 153-175 6-28 (134)
8 PF15623 CT47: Cancer/testis g 25.1 24 0.00052 33.3 -0.0 20 155-174 114-133 (279)
9 PF03770 IPK: Inositol polypho 23.5 30 0.00066 29.7 0.3 18 152-169 158-175 (197)
10 PF11395 DUF2873: Protein of u 22.9 52 0.0011 22.9 1.3 23 158-180 3-25 (43)
11 PRK13042 superantigen-like pro 21.3 1.5E+02 0.0033 28.3 4.4 19 172-190 164-182 (291)
12 smart00714 LITAF Possible memb 21.3 92 0.002 22.3 2.4 26 94-119 25-50 (67)
13 PRK04989 psbM photosystem II r 20.7 14 0.00031 25.0 -1.7 14 207-220 6-19 (35)
14 CHL00080 psbM photosystem II p 20.1 15 0.00033 24.7 -1.7 14 207-220 6-19 (34)
No 1
>PF05078 DUF679: Protein of unknown function (DUF679); InterPro: IPR007770 This family contains uncharacterised plant proteins of unknown function.
Probab=100.00 E-value=3.3e-85 Score=556.16 Aligned_cols=169 Identities=62% Similarity=1.020 Sum_probs=160.7
Q ss_pred HhhhhhhhccCChhhHHHHHhhccccccCCcccCchhhHHHHHHHHHhhhhhhcccccceeeCCCCcEEEEEEecccccc
Q 048572 58 LTSTANLANLLPTGTLLAFQLLTPIFTNNGSCDAATGPLTLLLLLLLAASCLLASFTDSVKSSSSGQVYYGFATFKGLFL 137 (234)
Q Consensus 58 lssta~LakLLPTGTvLaFQ~LsP~fTN~G~C~~~nr~Lt~~Ll~lca~sCff~sFTDS~~~~~dGkvyYG~AT~~Glw~ 137 (234)
|+++|||+|||||||||+||+|+|+|||||+|+++|||||++||++||++|||+||||||+| +|||+|||+||+||||+
T Consensus 1 ls~ta~La~LLPTGTvlaFq~L~P~~Tn~G~C~~~nr~lt~~Ll~lca~sC~f~sFTDS~~~-~dGkvyYG~aT~~Gl~~ 79 (170)
T PF05078_consen 1 LSSTANLAKLLPTGTVLAFQILSPSFTNNGECDTANRWLTAALLALCAASCFFFSFTDSFRG-SDGKVYYGFATPRGLWV 79 (170)
T ss_pred CccHHHHHHhCcchHHHHHHHhhhhcccCCccCcchHHHHHHHHHHHHHHHHHeeecceeEC-CCCCEEEEEEEccccee
Confidence 68999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred ccCCCCCCC-CCCCCCccccceeeecceehhhHHHHHHHhhHhccCCcccccCCCCCccHHHHHHhhhhHHHHhhheeee
Q 048572 138 FDYIQNPNA-SDHDLPDLIKYRIRFIDGVHAVSSVLVFAAVALRDKNVLSCFFPTPKHETQEVLDIVPVGIGLICSLLFV 216 (234)
Q Consensus 138 f~~~~~p~~-~~~~~~~~skyrLr~~DfVHA~lS~~VF~avAl~D~nVv~CffP~~~~~~~evl~~lPl~vG~l~S~vF~ 216 (234)
||+++..++ +..+.++++||||||+|||||+||++||++||++|+|||+||||.+++|+||+|++||++||++||+|||
T Consensus 80 f~~~~~~~g~~~~~~~~~~~yrlr~~DfvHA~lS~~VF~aval~d~~v~~Cf~P~~~~~~~~~l~~lP~~vG~~~S~vF~ 159 (170)
T PF05078_consen 80 FNYPGPEEGGGELKPRDLSKYRLRFIDFVHAFLSVVVFLAVALSDQNVVSCFFPSPSSETKEVLMNLPLGVGVLCSMVFM 159 (170)
T ss_pred cCCCCccccccCCCccccccceEehhhhhHHHHHHHHHHHhheeCCCcceecCCCCchhHHHHHHHhHHHHHHhHeeEEE
Confidence 998554322 2334579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCcccCC
Q 048572 217 IFPTRRHGIGY 227 (234)
Q Consensus 217 iFPt~RhGIGy 227 (234)
+|||+||||||
T Consensus 160 ~FPt~R~GIGy 170 (170)
T PF05078_consen 160 IFPTTRHGIGY 170 (170)
T ss_pred ECCCCCCCCCC
Confidence 99999999998
No 2
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=57.72 E-value=12 Score=27.68 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=27.6
Q ss_pred hhhHHHHHHHHHhhhhhhcc-cccceeeCCCCcEEE
Q 048572 93 TGPLTLLLLLLLAASCLLAS-FTDSVKSSSSGQVYY 127 (234)
Q Consensus 93 nr~Lt~~Ll~lca~sCff~s-FTDS~~~~~dGkvyY 127 (234)
+++..+.++.+.++.|++.. ...||+| +||-++=
T Consensus 2 ~~~~l~~~~~llg~~~l~i~~~~~syVd-~~G~L~E 36 (63)
T PF13127_consen 2 KKYILSLILLLLGVVCLFIFNIIGSYVD-EDGVLHE 36 (63)
T ss_pred cchHHHHHHHHHHHHHHHHHhcccceEC-CCCeEec
Confidence 57788889999999998764 5569999 9997763
No 3
>PF13511 DUF4124: Domain of unknown function (DUF4124)
Probab=42.21 E-value=15 Score=25.43 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=11.9
Q ss_pred cccee--eCCCCcEEEEEEe
Q 048572 114 TDSVK--SSSSGQVYYGFAT 131 (234)
Q Consensus 114 TDS~~--~~~dGkvyYG~AT 131 (234)
.+-|+ | ++|+++|.=.=
T Consensus 13 a~vYk~~D-~~G~v~ysd~P 31 (60)
T PF13511_consen 13 AEVYKWVD-ENGVVHYSDTP 31 (60)
T ss_pred ccEEEEEC-CCCCEEECccC
Confidence 46665 6 78999997543
No 4
>PF10894 DUF2689: Protein of unknown function (DUF2689); InterPro: IPR024396 Members of this protein family are annotated as conjugal transfer protein TrbD; however, currently no function is known.
Probab=37.27 E-value=11 Score=28.11 Aligned_cols=9 Identities=56% Similarity=0.342 Sum_probs=7.9
Q ss_pred cceehhhHH
Q 048572 162 IDGVHAVSS 170 (234)
Q Consensus 162 ~DfVHA~lS 170 (234)
-||+||++|
T Consensus 21 DDFmhaVlS 29 (61)
T PF10894_consen 21 DDFMHAVLS 29 (61)
T ss_pred HHHHHHHHh
Confidence 389999998
No 5
>PRK13724 conjugal transfer protein TrbD; Provisional
Probab=31.65 E-value=15 Score=27.61 Aligned_cols=9 Identities=56% Similarity=0.342 Sum_probs=7.9
Q ss_pred cceehhhHH
Q 048572 162 IDGVHAVSS 170 (234)
Q Consensus 162 ~DfVHA~lS 170 (234)
-||+||++|
T Consensus 21 DDF~h~VlS 29 (65)
T PRK13724 21 DDFMHAVLS 29 (65)
T ss_pred HHHHHHHHh
Confidence 399999988
No 6
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=28.02 E-value=27 Score=28.16 Aligned_cols=23 Identities=4% Similarity=0.108 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHhhhhhhcccccc
Q 048572 94 GPLTLLLLLLLAASCLLASFTDS 116 (234)
Q Consensus 94 r~Lt~~Ll~lca~sCff~sFTDS 116 (234)
||+..++++++.+.+||+.+-=+
T Consensus 1 RW~l~~iii~~i~l~~~~~~~~~ 23 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYCHN 23 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHH
Confidence 67777777777666666654433
No 7
>PF15601 Imm42: Immunity protein 42
Probab=27.47 E-value=28 Score=29.44 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=19.0
Q ss_pred ccccceeeecceehhhHHHHHHH
Q 048572 153 DLIKYRIRFIDGVHAVSSVLVFA 175 (234)
Q Consensus 153 ~~skyrLr~~DfVHA~lS~~VF~ 175 (234)
+..-|.+.-.||||+|+|.+..-
T Consensus 6 ~~~~~eiG~~dfl~sFFsti~~~ 28 (134)
T PF15601_consen 6 GFSWYEIGPPDFLHSFFSTISYR 28 (134)
T ss_pred CceEEEeCCHHHHHHHHHHHHHH
Confidence 34568899999999999998653
No 8
>PF15623 CT47: Cancer/testis gene family 47
Probab=25.09 E-value=24 Score=33.31 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=16.6
Q ss_pred ccceeeecceehhhHHHHHH
Q 048572 155 IKYRIRFIDGVHAVSSVLVF 174 (234)
Q Consensus 155 skyrLr~~DfVHA~lS~~VF 174 (234)
..||+.|+|+||++|-=+-+
T Consensus 114 aGfR~~fLDLVhslL~RiY~ 133 (279)
T PF15623_consen 114 AGFRFMFLDLVHSLLNRIYY 133 (279)
T ss_pred ccceeeHHHHHHHHHHHHhh
Confidence 34999999999999876654
No 9
>PF03770 IPK: Inositol polyphosphate kinase ; InterPro: IPR005522 ArgRIII has been demonstrated to be an inositol polyphosphate kinase [] which catalyses the reaction ATP + 1D-myo-inositol 1,4,5-trisphosphate = ADP + 1D-myo-inositol 1,3,4,5-tetrakisphosphate .; GO: 0008440 inositol trisphosphate 3-kinase activity; PDB: 2IF8_B 2IEW_B 1W2C_A 1W2F_A 1W2D_A 2A98_A 2AQX_A 1TZD_A.
Probab=23.47 E-value=30 Score=29.67 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=11.2
Q ss_pred CccccceeeecceehhhH
Q 048572 152 PDLIKYRIRFIDGVHAVS 169 (234)
Q Consensus 152 ~~~skyrLr~~DfVHA~l 169 (234)
.....+++|+|||.|+..
T Consensus 158 ~~~~~~~vklIDFAH~~~ 175 (197)
T PF03770_consen 158 DPPNKVDVKLIDFAHVFP 175 (197)
T ss_dssp ---S-EEEEEE--TTEEE
T ss_pred CCCCcccEEEEECCCccc
Confidence 356789999999999987
No 10
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=22.87 E-value=52 Score=22.93 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=19.8
Q ss_pred eeeecceehhhHHHHHHHhhHhc
Q 048572 158 RIRFIDGVHAVSSVLVFAAVALR 180 (234)
Q Consensus 158 rLr~~DfVHA~lS~~VF~avAl~ 180 (234)
.|..+||--.++|.+.|+++.+.
T Consensus 3 ~ltl~dfylc~l~~llflv~iml 25 (43)
T PF11395_consen 3 HLTLFDFYLCFLSFLLFLVIIML 25 (43)
T ss_pred ceehhHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999998763
No 11
>PRK13042 superantigen-like protein; Reviewed
Probab=21.27 E-value=1.5e+02 Score=28.27 Aligned_cols=19 Identities=16% Similarity=0.045 Sum_probs=11.4
Q ss_pred HHHHhhHhccCCcccccCC
Q 048572 172 LVFAAVALRDKNVLSCFFP 190 (234)
Q Consensus 172 ~VF~avAl~D~nVv~CffP 190 (234)
=||++-=..|.+--.|.|-
T Consensus 164 DVF~V~E~~~~~~~~~syG 182 (291)
T PRK13042 164 DVFVVLEENKYNLEKYSVG 182 (291)
T ss_pred eEEEEeccCCCcCceEEEC
Confidence 3566665666666666663
No 12
>smart00714 LITAF Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), also known as PIG7, and other animal proteins.
Probab=21.27 E-value=92 Score=22.29 Aligned_cols=26 Identities=38% Similarity=0.452 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHhhhhhhcccccceee
Q 048572 94 GPLTLLLLLLLAASCLLASFTDSVKS 119 (234)
Q Consensus 94 r~Lt~~Ll~lca~sCff~sFTDS~~~ 119 (234)
.|+..+++.++...|++=.+-|+++|
T Consensus 25 t~~~~~ll~~~~~~~~iP~~~~~~kd 50 (67)
T smart00714 25 AWLICCLLFLLCFCCCLPCCLDSFKD 50 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccC
Confidence 45556666666544555557898888
No 13
>PRK04989 psbM photosystem II reaction center protein M; Provisional
Probab=20.70 E-value=14 Score=24.97 Aligned_cols=14 Identities=57% Similarity=1.156 Sum_probs=11.8
Q ss_pred HHHhhheeeeEccC
Q 048572 207 IGLICSLLFVIFPT 220 (234)
Q Consensus 207 vG~l~S~vF~iFPt 220 (234)
.|++++.+|+.+||
T Consensus 6 lgfiAt~Lfi~iPt 19 (35)
T PRK04989 6 LGFVASLLFVLVPT 19 (35)
T ss_pred HHHHHHHHHHHHHH
Confidence 48889999988886
No 14
>CHL00080 psbM photosystem II protein M
Probab=20.10 E-value=15 Score=24.70 Aligned_cols=14 Identities=36% Similarity=0.885 Sum_probs=12.1
Q ss_pred HHHhhheeeeEccC
Q 048572 207 IGLICSLLFVIFPT 220 (234)
Q Consensus 207 vG~l~S~vF~iFPt 220 (234)
.|++++.+|+..||
T Consensus 6 lgfiAt~LFi~iPt 19 (34)
T CHL00080 6 LAFIATALFILVPT 19 (34)
T ss_pred HHHHHHHHHHHHHH
Confidence 48999999998887
Done!