Query 048572
Match_columns 234
No_of_seqs 105 out of 122
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 18:46:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048572.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048572hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4frf_A Inositol polyphosphate 28.3 16 0.00055 31.9 0.8 16 153-168 226-241 (275)
2 1k2d_P MBP peptide, myelin bas 25.9 18 0.00062 21.9 0.5 11 218-228 10-20 (26)
3 3dac_P Cellular tumor antigen 13.9 33 0.0011 20.1 -0.3 15 61-75 3-17 (21)
4 3arc_M Photosystem II reaction 13.4 15 0.00051 24.1 -2.1 14 207-220 6-19 (36)
5 1e0l_A Formin binding protein; 13.2 81 0.0028 19.5 1.4 18 118-136 12-30 (37)
6 1e0m_A Wwprototype; SH3 protot 12.9 85 0.0029 18.9 1.4 10 118-128 12-21 (37)
7 1wr4_A Ubiquitin-protein ligas 12.3 83 0.0028 18.7 1.2 9 118-127 13-21 (36)
8 2le2_A P56; UDG inhibition, DN 11.5 1E+02 0.0035 21.6 1.6 25 113-140 6-36 (56)
9 2law_A Yorkie homolog; YAP, SM 11.4 1E+02 0.0034 19.1 1.4 10 118-128 15-24 (38)
10 2ysh_A GAS-7, growth-arrest-sp 11.3 1E+02 0.0034 19.0 1.4 10 118-128 16-25 (40)
No 1
>4frf_A Inositol polyphosphate multikinase alpha; ATP grAsp, inositol phosphate kinase, transferase; 2.90A {Arabidopsis thaliana}
Probab=28.26 E-value=16 Score=31.86 Aligned_cols=16 Identities=19% Similarity=0.405 Sum_probs=13.0
Q ss_pred ccccceeeecceehhh
Q 048572 153 DLIKYRIRFIDGVHAV 168 (234)
Q Consensus 153 ~~skyrLr~~DfVHA~ 168 (234)
+..+.++|.|||.|++
T Consensus 226 ~~~~~~vrmIDFAh~~ 241 (275)
T 4frf_A 226 DDARPQVKLVDFAHVL 241 (275)
T ss_dssp -CCCCEEEEECCTTCE
T ss_pred CCCcccEEEEECCCCC
Confidence 4567899999999974
No 2
>1k2d_P MBP peptide, myelin basic protein peptide with 8 residue linke; MHC class II, I-AU, H-2U, autoimmune disease; HET: NDG NAG; 2.20A {Mus musculus}
Probab=25.94 E-value=18 Score=21.92 Aligned_cols=11 Identities=45% Similarity=0.824 Sum_probs=8.5
Q ss_pred ccCCCcccCCC
Q 048572 218 FPTRRHGIGYP 228 (234)
Q Consensus 218 FPt~RhGIGyp 228 (234)
=|+.|||-|--
T Consensus 10 rpsqrhg~gsg 20 (26)
T 1k2d_P 10 RPSQRHGTGSG 20 (26)
T ss_pred CccccccCCCC
Confidence 38899998853
No 3
>3dac_P Cellular tumor antigen P53; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio}
Probab=13.89 E-value=33 Score=20.07 Aligned_cols=15 Identities=33% Similarity=0.569 Sum_probs=12.1
Q ss_pred hhhhhccCChhhHHH
Q 048572 61 TANLANLLPTGTLLA 75 (234)
Q Consensus 61 ta~LakLLPTGTvLa 75 (234)
-+.|-||||.+++|.
T Consensus 3 FS~l~kLLp~~~~ls 17 (21)
T 3dac_P 3 FSDLWKLLPENNVLS 17 (26)
T ss_pred cchhhhhCCccceec
Confidence 357889999999875
No 4
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=13.40 E-value=15 Score=24.05 Aligned_cols=14 Identities=50% Similarity=1.061 Sum_probs=11.2
Q ss_pred HHHhhheeeeEccC
Q 048572 207 IGLICSLLFVIFPT 220 (234)
Q Consensus 207 vG~l~S~vF~iFPt 220 (234)
.|++++.+|+.+|+
T Consensus 6 l~fiAt~Lfi~iPt 19 (36)
T 3arc_M 6 LGLIATALFVLVPS 19 (36)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 37888888888885
No 5
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=13.19 E-value=81 Score=19.53 Aligned_cols=18 Identities=28% Similarity=0.569 Sum_probs=9.9
Q ss_pred eeCCCCcEEEE-EEeccccc
Q 048572 118 KSSSSGQVYYG-FATFKGLF 136 (234)
Q Consensus 118 ~~~~dGkvyYG-~AT~~Glw 136 (234)
++ .||+.||= ..|...-|
T Consensus 12 ~~-~~G~~YYyN~~T~es~W 30 (37)
T 1e0l_A 12 KT-ADGKTYYYNNRTLESTW 30 (37)
T ss_dssp EC-TTSCEEEEETTTTEEES
T ss_pred EC-CCCCEEEEECCCCCEEe
Confidence 44 67988772 23333444
No 6
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=12.85 E-value=85 Score=18.88 Aligned_cols=10 Identities=40% Similarity=0.836 Sum_probs=7.2
Q ss_pred eeCCCCcEEEE
Q 048572 118 KSSSSGQVYYG 128 (234)
Q Consensus 118 ~~~~dGkvyYG 128 (234)
.+ .+|++||=
T Consensus 12 ~~-~~G~~Yy~ 21 (37)
T 1e0m_A 12 KT-HNGKTYYY 21 (37)
T ss_dssp EC-SSCCEEEE
T ss_pred EC-CCCCEEEE
Confidence 34 68998884
No 7
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=12.28 E-value=83 Score=18.75 Aligned_cols=9 Identities=44% Similarity=1.058 Sum_probs=6.9
Q ss_pred eeCCCCcEEE
Q 048572 118 KSSSSGQVYY 127 (234)
Q Consensus 118 ~~~~dGkvyY 127 (234)
++ .+|++||
T Consensus 13 ~d-~~g~~Yy 21 (36)
T 1wr4_A 13 KD-AKGRTYY 21 (36)
T ss_dssp EC-SSSCEEE
T ss_pred EC-CCCCEEE
Confidence 45 6899987
No 8
>2le2_A P56; UDG inhibition, DNA mimicry, hydrolas inhibitor; NMR {Bacillus phage PHI29}
Probab=11.45 E-value=1e+02 Score=21.57 Aligned_cols=25 Identities=44% Similarity=0.846 Sum_probs=17.6
Q ss_pred cccce------eeCCCCcEEEEEEeccccccccC
Q 048572 113 FTDSV------KSSSSGQVYYGFATFKGLFLFDY 140 (234)
Q Consensus 113 FTDS~------~~~~dGkvyYG~AT~~Glw~f~~ 140 (234)
|-||| ++ .||+-||-.- +||-..|+
T Consensus 6 f~dsy~~t~ll~d-ddg~q~~e~h--~glslsdf 36 (56)
T 2le2_A 6 FVDSYDVTMLLQD-DDGKQYYEYH--KGLSLSDF 36 (56)
T ss_dssp SCSSEEEEEEEEC-TTSCEEEEEE--EEECHHHH
T ss_pred cccceeEEEEEEc-CCCceeeeee--cCcccccE
Confidence 66776 46 7999999764 67766553
No 9
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=11.39 E-value=1e+02 Score=19.10 Aligned_cols=10 Identities=30% Similarity=0.776 Sum_probs=7.4
Q ss_pred eeCCCCcEEEE
Q 048572 118 KSSSSGQVYYG 128 (234)
Q Consensus 118 ~~~~dGkvyYG 128 (234)
.+ .+|++||=
T Consensus 15 ~~-~~G~~Yy~ 24 (38)
T 2law_A 15 MT-QDGEIYYI 24 (38)
T ss_dssp EE-TTTEEEEE
T ss_pred EC-CCCCEEEE
Confidence 34 68999983
No 10
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=11.29 E-value=1e+02 Score=19.03 Aligned_cols=10 Identities=40% Similarity=0.637 Sum_probs=7.3
Q ss_pred eeCCCCcEEEE
Q 048572 118 KSSSSGQVYYG 128 (234)
Q Consensus 118 ~~~~dGkvyYG 128 (234)
.+ .+|++||=
T Consensus 16 ~d-~~Gr~YY~ 25 (40)
T 2ysh_A 16 LS-PQGRRYYV 25 (40)
T ss_dssp EC-TTSCEEEE
T ss_pred EC-CCCCEEEE
Confidence 45 68999983
Done!