Query 048572
Match_columns 234
No_of_seqs 105 out of 122
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 18:46:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048572.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048572hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ywia1 b.72.1.1 (A:15-42) Hun 41.1 5.8 0.00042 23.0 1.5 10 117-127 6-15 (28)
2 d1o6wa1 b.72.1.1 (A:1-29) Spli 36.5 7.2 0.00052 22.8 1.4 10 117-127 7-16 (29)
3 d2rm0w1 b.72.1.1 (W:1-37) Form 30.5 10 0.00073 23.0 1.4 10 117-127 11-20 (37)
4 d1o6wa2 b.72.1.1 (A:30-75) Spl 30.3 9.8 0.00072 24.2 1.4 11 117-128 19-29 (46)
5 d2axtm1 f.23.35.1 (M:1-36) Pho 20.7 3.6 0.00026 25.4 -2.1 14 207-220 6-19 (36)
6 d2ogqa1 d.223.1.2 (A:371-494) 14.3 15 0.0011 27.4 -0.4 13 220-232 48-60 (124)
7 d1s12a_ d.64.2.1 (A:) Hypothet 13.2 49 0.0035 23.2 2.2 47 162-208 19-75 (94)
8 d2jmfa1 b.72.1.1 (A:521-553) U 13.2 36 0.0026 19.8 1.3 10 118-128 11-20 (33)
9 d2dk1a1 b.72.1.1 (A:7-44) WW d 12.9 22 0.0016 21.5 0.2 16 121-136 9-25 (38)
10 d1aopa2 d.58.36.1 (A:346-425) 9.7 62 0.0045 21.6 1.7 16 121-136 7-22 (80)
No 1
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.06 E-value=5.8 Score=22.98 Aligned_cols=10 Identities=50% Similarity=0.933 Sum_probs=7.8
Q ss_pred eeeCCCCcEEE
Q 048572 117 VKSSSSGQVYY 127 (234)
Q Consensus 117 ~~~~~dGkvyY 127 (234)
+++ +||++||
T Consensus 6 ~~~-~~G~~YY 15 (28)
T d1ywia1 6 HKS-PDGRTYY 15 (28)
T ss_dssp EEE-TTTEEEE
T ss_pred EEC-CCCCEEE
Confidence 356 7999988
No 2
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=36.50 E-value=7.2 Score=22.76 Aligned_cols=10 Identities=50% Similarity=1.129 Sum_probs=7.8
Q ss_pred eeeCCCCcEEE
Q 048572 117 VKSSSSGQVYY 127 (234)
Q Consensus 117 ~~~~~dGkvyY 127 (234)
+++ +||++||
T Consensus 7 ~~~-~~G~~YY 16 (29)
T d1o6wa1 7 AKD-ASGRIYY 16 (29)
T ss_dssp EEC-TTCCEEE
T ss_pred EEC-CCCCEEE
Confidence 355 7999988
No 3
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]}
Probab=30.45 E-value=10 Score=22.96 Aligned_cols=10 Identities=40% Similarity=0.962 Sum_probs=7.8
Q ss_pred eeeCCCCcEEE
Q 048572 117 VKSSSSGQVYY 127 (234)
Q Consensus 117 ~~~~~dGkvyY 127 (234)
+++ +||++||
T Consensus 11 ~~~-~~Gr~YY 20 (37)
T d2rm0w1 11 YKT-ADGKTYY 20 (37)
T ss_dssp EEC-TTCCEEE
T ss_pred EEC-CCCCEEE
Confidence 355 7999998
No 4
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=30.28 E-value=9.8 Score=24.17 Aligned_cols=11 Identities=45% Similarity=0.893 Sum_probs=8.1
Q ss_pred eeeCCCCcEEEE
Q 048572 117 VKSSSSGQVYYG 128 (234)
Q Consensus 117 ~~~~~dGkvyYG 128 (234)
+++ +||++||=
T Consensus 19 ~~~-~~Gr~YYy 29 (46)
T d1o6wa2 19 AKT-ADGKVYYY 29 (46)
T ss_dssp EEC-TTCCEEEE
T ss_pred EEC-CCCCEEEE
Confidence 355 79999883
No 5
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=20.68 E-value=3.6 Score=25.40 Aligned_cols=14 Identities=50% Similarity=1.061 Sum_probs=12.3
Q ss_pred HHHhhheeeeEccC
Q 048572 207 IGLICSLLFVIFPT 220 (234)
Q Consensus 207 vG~l~S~vF~iFPt 220 (234)
.|++++.+|++.|+
T Consensus 6 Lg~iAt~LFilvPt 19 (36)
T d2axtm1 6 LGLIATALFVLVPS 19 (36)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 58999999999886
No 6
>d2ogqa1 d.223.1.2 (A:371-494) Serine/threonine-protein kinase plk C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.27 E-value=15 Score=27.39 Aligned_cols=13 Identities=23% Similarity=0.700 Sum_probs=8.7
Q ss_pred CCCcccCCCCCCC
Q 048572 220 TRRHGIGYPITPG 232 (234)
Q Consensus 220 t~RhGIGyp~~~~ 232 (234)
+++|||||-++.+
T Consensus 48 S~KyGlgY~LSdg 60 (124)
T d2ogqa1 48 SDKYGLGYQLCDN 60 (124)
T ss_dssp TTTTEEEEEETTS
T ss_pred CCCceEEEEEcCC
Confidence 5677777766554
No 7
>d1s12a_ d.64.2.1 (A:) Hypothetical protein TM1457 {Thermotoga maritima [TaxId: 2336]}
Probab=13.22 E-value=49 Score=23.18 Aligned_cols=47 Identities=15% Similarity=0.079 Sum_probs=36.8
Q ss_pred cceehhhHHHHHHHhhHhcc----------CCcccccCCCCCccHHHHHHhhhhHHH
Q 048572 162 IDGVHAVSSVLVFAAVALRD----------KNVLSCFFPTPKHETQEVLDIVPVGIG 208 (234)
Q Consensus 162 ~DfVHA~lS~~VF~avAl~D----------~nVv~CffP~~~~~~~evl~~lPl~vG 208 (234)
-|.|=|..|++++.++--.+ .+-..|-++..+++.+.+|+++=++.-
T Consensus 19 ~DIVCAaVS~l~~~~vN~l~~~~~~~~~~~~G~l~~~~~~~~~~~q~ll~~m~~gL~ 75 (94)
T d1s12a_ 19 DKTLCASVSLLTQHVANFLKAEKKAKIKKESGYLKVKFEELENCEVKVLAAMVRSLK 75 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSCCHHHHHHHHHHHHHHH
T ss_pred CceeehhhHHHHHHHHHHHHHHhCCcEEeeCCEEEEEECCCCHHHHHHHHHHHHHHH
Confidence 49999999999999886432 344788889988888888888766653
No 8
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=13.17 E-value=36 Score=19.79 Aligned_cols=10 Identities=10% Similarity=0.494 Sum_probs=7.5
Q ss_pred eeCCCCcEEEE
Q 048572 118 KSSSSGQVYYG 128 (234)
Q Consensus 118 ~~~~dGkvyYG 128 (234)
.+ .+|++||-
T Consensus 11 ~d-~~G~~Yyi 20 (33)
T d2jmfa1 11 YT-AAGERFFV 20 (33)
T ss_dssp EC-TTSCEEEE
T ss_pred EC-CCCCEEEE
Confidence 45 78999983
No 9
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.92 E-value=22 Score=21.54 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=9.2
Q ss_pred CCCcEEE-EEEeccccc
Q 048572 121 SSGQVYY-GFATFKGLF 136 (234)
Q Consensus 121 ~dGkvyY-G~AT~~Glw 136 (234)
+||++|| =..|...-|
T Consensus 9 ~~G~~YYyN~~T~eS~W 25 (38)
T d2dk1a1 9 SEGYHYYYDLISGASQW 25 (38)
T ss_dssp STTCCCEEESSSCCEES
T ss_pred CCCCEEEEECCCCCEec
Confidence 6898766 344443444
No 10
>d1aopa2 d.58.36.1 (A:346-425) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]}
Probab=9.70 E-value=62 Score=21.62 Aligned_cols=16 Identities=6% Similarity=-0.101 Sum_probs=14.1
Q ss_pred CCCcEEEEEEeccccc
Q 048572 121 SSGQVYYGFATFKGLF 136 (234)
Q Consensus 121 ~dGkvyYG~AT~~Glw 136 (234)
.||+.|||+.-+.|--
T Consensus 7 ~dG~~~~gl~v~~GRi 22 (80)
T d1aopa2 7 IDDNWHLTLFIENGRI 22 (80)
T ss_dssp STTEEEEEECCGGGEE
T ss_pred CCCCEEEEEEecCccc
Confidence 6999999999998854
Done!