BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048574
         (65 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1YDU|A Chain A, Solution Nmr Structure Of At5g01610, An Arabidopsis
          Thaliana Protein Containing Duf538 Domain
          Length = 170

 Score = 33.9 bits (76), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 24 DVLQEYDFPVGILPKGVTRYALNAETGEL 52
          ++L+EYD P+GI P   T Y  + ET +L
Sbjct: 56 ELLKEYDLPIGIFPGDATNYEFDEETKKL 84


>pdb|4EJ6|A Chain A, Crystal Structure Of A Putative Zinc-Binding Dehydrogenase
           (Target Psi-012003) From Sinorhizobium Meliloti 1021
 pdb|4EJM|A Chain A, Crystal Structure Of A Putative Zinc-Binding Dehydrogenase
           (Target Psi-012003) From Sinorhizobium Meliloti 1021
           Bound To Nadp
          Length = 370

 Score = 29.3 bits (64), Expect = 0.51,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 14  ASADSEPSAYDVLQEYDFPVGILPKGV 40
           A+A  +PSA DV++    PVG++P GV
Sbjct: 228 ATATVDPSAGDVVEAIAGPVGLVPGGV 254


>pdb|3A0B|C Chain C, Crystal Structure Of Br-Substituted Photosystem Ii Complex
 pdb|3A0B|CC Chain c, Crystal Structure Of Br-Substituted Photosystem Ii Complex
 pdb|3A0H|C Chain C, Crystal Structure Of I-Substituted Photosystem Ii Complex
 pdb|3A0H|CC Chain c, Crystal Structure Of I-Substituted Photosystem Ii Complex
          Length = 447

 Score = 26.6 bits (57), Expect = 4.2,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 37  PKGVTRYALNAETGELIFG 55
           P G+ +Y + + TGE+IFG
Sbjct: 308 PTGLGKYLMRSPTGEIIFG 326


>pdb|3KZI|C Chain C, Crystal Structure Of Monomeric Form Of Cyanobacterial
           Photosystem Ii
 pdb|3PRQ|C Chain C, Crystal Structure Of Cyanobacterial Photosystem Ii In
           Complex With Terbutryn (Part 1 Of 2). This File Contains
           First Monomer Of Psii Dimer
 pdb|3PRR|C Chain C, Crystal Structure Of Cyanobacterial Photosystem Ii In
           Complex With Terbutryn (Part 2 Of 2). This File Contains
           Second Monomer Of Psii Dimer
 pdb|4FBY|C Chain C, Fs X-Ray Diffraction Of Photosystem Ii
 pdb|4FBY|P Chain P, Fs X-Ray Diffraction Of Photosystem Ii
 pdb|4IXQ|C Chain C, Rt Fs X-ray Diffraction Of Photosystem Ii, Dark State
 pdb|4IXQ|CC Chain c, Rt Fs X-ray Diffraction Of Photosystem Ii, Dark State
 pdb|4IXR|C Chain C, Rt Fs X-ray Diffraction Of Photosystem Ii, First
           Illuminated State
 pdb|4IXR|CC Chain c, Rt Fs X-ray Diffraction Of Photosystem Ii, First
           Illuminated State
          Length = 461

 Score = 26.6 bits (57), Expect = 4.2,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 37  PKGVTRYALNAETGELIFG 55
           P G+ +Y + + TGE+IFG
Sbjct: 322 PTGLGKYLMRSPTGEIIFG 340


>pdb|3ARC|C Chain C, Crystal Structure Of Oxygen-Evolving Photosystem Ii At 1.9
           Angstrom Resolution
 pdb|3ARC|CC Chain c, Crystal Structure Of Oxygen-Evolving Photosystem Ii At 1.9
           Angstrom Resolution
          Length = 455

 Score = 26.2 bits (56), Expect = 4.3,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 37  PKGVTRYALNAETGELIFG 55
           P G+ +Y + + TGE+IFG
Sbjct: 316 PTGLGKYLMRSPTGEIIFG 334


>pdb|1S5L|C Chain C, Architecture Of The Photosynthetic Oxygen Evolving Center
 pdb|1S5L|CC Chain c, Architecture Of The Photosynthetic Oxygen Evolving Center
 pdb|1W5C|C Chain C, Photosystem Ii From Thermosynechococcus Elongatus
 pdb|1W5C|I Chain I, Photosystem Ii From Thermosynechococcus Elongatus
 pdb|2AXT|C Chain C, Crystal Structure Of Photosystem Ii From
           Thermosynechococcus Elongatus
 pdb|2AXT|CC Chain c, Crystal Structure Of Photosystem Ii From
           Thermosynechococcus Elongatus
 pdb|3BZ1|C Chain C, Crystal Structure Of Cyanobacterial Photosystem Ii (Part 1
           Of 2). This File Contains First Monomer Of Psii Dimer
 pdb|3BZ2|C Chain C, Crystal Structure Of Cyanobacterial Photosystem Ii (Part 2
           Of 2). This File Contains Second Monomer Of Psii Dimer
          Length = 473

 Score = 26.2 bits (56), Expect = 4.4,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 37  PKGVTRYALNAETGELIFG 55
           P G+ +Y + + TGE+IFG
Sbjct: 334 PTGLGKYLMRSPTGEIIFG 352


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.136    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,987,192
Number of Sequences: 62578
Number of extensions: 64761
Number of successful extensions: 132
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 126
Number of HSP's gapped (non-prelim): 6
length of query: 65
length of database: 14,973,337
effective HSP length: 36
effective length of query: 29
effective length of database: 12,720,529
effective search space: 368895341
effective search space used: 368895341
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)