Query 048574
Match_columns 65
No_of_seqs 102 out of 215
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 10:47:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048574.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048574hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04398 DUF538: Protein of un 99.6 1.2E-15 2.6E-20 99.6 3.6 38 21-58 1-38 (110)
2 PF09351 DUF1993: Domain of un 65.6 3 6.4E-05 28.7 0.8 14 21-34 143-156 (162)
3 smart00540 LEM in nuclear memb 58.8 8.1 0.00018 21.9 1.7 18 19-36 8-25 (44)
4 PF10262 Rdx: Rdx family; Int 55.2 12 0.00027 22.0 2.2 13 48-60 41-53 (76)
5 PF06742 DUF1214: Protein of u 49.4 19 0.00041 21.8 2.4 25 35-59 51-76 (103)
6 KOG2455 Delta-1-pyrroline-5-ca 47.9 12 0.00025 31.2 1.6 16 21-36 241-256 (561)
7 PF05345 He_PIG: Putative Ig d 45.4 20 0.00044 20.0 1.9 18 29-54 10-27 (49)
8 KOG3591 Alpha crystallins [Pos 43.5 18 0.00038 25.2 1.8 30 25-56 117-146 (173)
9 PF15117 UPF0697: Uncharacteri 41.4 37 0.00081 22.5 3.0 26 4-29 40-67 (99)
10 PF15537 Toxin_59: Putative to 37.2 29 0.00064 23.9 2.0 27 24-56 41-67 (125)
11 cd04911 ACT_AKiii-YclM-BS_1 AC 37.2 35 0.00076 21.1 2.2 32 22-53 21-52 (76)
12 PRK05231 homoserine kinase; Pr 36.2 75 0.0016 22.2 4.0 39 20-58 10-54 (319)
13 TIGR00938 thrB_alt homoserine 35.9 63 0.0014 22.7 3.6 43 17-59 7-55 (307)
14 PRK09293 fructose-1,6-bisphosp 35.9 34 0.00074 26.0 2.4 18 38-55 170-187 (327)
15 PF09949 DUF2183: Uncharacteri 35.9 19 0.00042 22.9 0.9 16 20-35 14-29 (100)
16 PF00316 FBPase: Fructose-1-6- 35.0 28 0.00061 26.6 1.8 17 38-54 169-185 (324)
17 PF11426 Tn7_TnsC_Int: Tn7 tra 34.6 32 0.0007 19.9 1.7 15 17-31 22-36 (48)
18 cd04483 hOBFC1_like hOBFC1_lik 34.2 43 0.00092 20.7 2.3 19 41-59 16-34 (92)
19 TIGR02503 type_III_SycN type I 34.2 76 0.0016 21.4 3.6 40 20-60 3-42 (119)
20 PLN02262 fructose-1,6-bisphosp 34.1 34 0.00073 26.4 2.1 18 38-55 182-199 (340)
21 smart00469 WIF Wnt-inhibitory 33.0 67 0.0014 22.1 3.3 35 24-58 71-113 (136)
22 PRK10713 2Fe-2S ferredoxin Yfa 33.0 74 0.0016 19.0 3.1 16 18-33 18-33 (84)
23 cd00354 FBPase Fructose-1,6-bi 32.7 36 0.00079 25.7 2.1 18 38-55 163-180 (315)
24 PLN02628 fructose-1,6-bisphosp 32.6 38 0.00081 26.4 2.2 18 38-55 192-209 (351)
25 PF14567 SUKH_5: SMI1-KNR4 cel 32.4 18 0.0004 24.4 0.4 30 21-51 73-105 (132)
26 cd01781 AF6_RA_repeat2 Ubiquit 31.1 30 0.00064 22.7 1.2 25 20-48 30-54 (100)
27 cd07102 ALDH_EDX86601 Uncharac 31.1 32 0.00068 25.8 1.5 16 21-36 161-176 (452)
28 cd04934 ACT_AK-Hom3_1 CT domai 30.8 35 0.00077 20.1 1.4 32 20-51 19-50 (73)
29 cd04890 ACT_AK-like_1 ACT doma 30.4 40 0.00087 18.2 1.5 25 20-44 18-42 (62)
30 PRK08364 sulfur carrier protei 29.9 72 0.0016 18.5 2.7 17 17-33 21-37 (70)
31 cd07147 ALDH_F21_RNP123 Aldehy 29.6 35 0.00075 25.7 1.5 16 21-36 168-183 (452)
32 cd07090 ALDH_F9_TMBADH NAD+-de 29.6 34 0.00073 25.9 1.5 16 21-36 161-176 (457)
33 PLN02542 fructose-1,6-bisphosp 29.6 43 0.00092 26.8 2.1 18 38-55 259-276 (412)
34 cd07104 ALDH_BenzADH-like ALDH 29.6 34 0.00073 25.4 1.5 15 22-36 145-159 (431)
35 TIGR02689 ars_reduc_gluta arse 28.9 40 0.00087 21.3 1.5 38 17-56 40-78 (126)
36 COG1246 ArgA N-acetylglutamate 28.9 26 0.00057 24.5 0.7 36 16-51 8-50 (153)
37 COG2104 ThiS Sulfur transfer p 28.9 53 0.0011 19.7 2.0 15 19-33 17-31 (68)
38 cd07101 ALDH_SSADH2_GabD2 Myco 27.7 38 0.00082 25.6 1.5 16 21-36 163-178 (454)
39 PF03975 CheD: CheD chemotacti 27.4 85 0.0019 19.9 2.9 40 20-62 67-112 (114)
40 PF03020 LEM: LEM domain; Int 27.4 16 0.00035 20.7 -0.4 20 17-36 6-25 (43)
41 cd07091 ALDH_F1-2_Ald2-like AL 27.4 39 0.00084 25.7 1.5 16 21-36 186-201 (476)
42 cd07131 ALDH_AldH-CAJ73105 Unc 27.3 40 0.00086 25.6 1.5 16 21-36 180-195 (478)
43 cd07119 ALDH_BADH-GbsA Bacillu 27.2 40 0.00087 25.7 1.5 16 21-36 179-194 (482)
44 PF14974 DUF4511: Domain of un 27.0 40 0.00087 22.3 1.3 11 23-33 54-64 (105)
45 cd04478 RPA2_DBD_D RPA2_DBD_D: 26.7 80 0.0017 18.5 2.5 21 39-59 16-36 (95)
46 PF02772 S-AdoMet_synt_M: S-ad 26.3 32 0.0007 23.0 0.8 23 28-52 98-120 (120)
47 cd07144 ALDH_ALD2-YMR170C Sacc 25.9 42 0.0009 25.7 1.4 16 21-36 189-204 (484)
48 cd07110 ALDH_F10_BADH Arabidop 25.6 44 0.00096 25.2 1.5 16 21-36 165-180 (456)
49 COG2706 3-carboxymuconate cycl 25.6 52 0.0011 25.9 1.9 17 39-55 65-81 (346)
50 cd07151 ALDH_HBenzADH NADP+-de 25.6 45 0.00098 25.4 1.5 15 22-36 177-191 (465)
51 cd07093 ALDH_F8_HMSADH Human a 25.4 48 0.001 24.9 1.6 17 21-37 162-178 (455)
52 PRK06437 hypothetical protein; 25.3 74 0.0016 18.5 2.2 17 17-33 18-34 (67)
53 PLN02766 coniferyl-aldehyde de 25.3 44 0.00096 26.0 1.5 16 21-36 203-218 (501)
54 PRK13968 putative succinate se 25.2 44 0.00096 25.6 1.4 15 22-36 172-186 (462)
55 cd07138 ALDH_CddD_SSP0762 Rhod 25.2 46 0.001 25.2 1.5 16 21-36 175-190 (466)
56 PF03990 DUF348: Domain of unk 25.1 76 0.0016 16.9 2.0 18 17-34 15-32 (43)
57 PRK13488 chemoreceptor glutami 24.8 1.7E+02 0.0038 20.0 4.2 37 20-59 110-152 (157)
58 PRK10090 aldehyde dehydrogenas 24.8 46 0.00099 25.3 1.5 16 21-36 116-131 (409)
59 cd07088 ALDH_LactADH-AldA Esch 24.8 47 0.001 25.1 1.5 16 21-36 178-193 (468)
60 TIGR02299 HpaE 5-carboxymethyl 24.6 43 0.00094 25.6 1.3 16 21-36 180-195 (488)
61 PF01336 tRNA_anti-codon: OB-f 24.5 73 0.0016 17.2 1.9 20 39-58 16-35 (75)
62 cd07105 ALDH_SaliADH Salicylal 24.5 49 0.0011 24.9 1.5 16 21-36 143-158 (432)
63 PRK05863 sulfur carrier protei 24.4 80 0.0017 18.0 2.1 36 18-54 14-58 (65)
64 TIGR02174 CXXU_selWTH selT/sel 24.1 70 0.0015 18.8 1.9 15 45-59 36-50 (72)
65 cd07114 ALDH_DhaS Uncharacteri 24.0 49 0.0011 25.0 1.5 16 21-36 164-179 (457)
66 cd07115 ALDH_HMSADH_HapE Pseud 23.9 46 0.001 25.1 1.3 17 21-37 162-178 (453)
67 cd07118 ALDH_SNDH Gluconobacte 23.8 51 0.0011 25.0 1.6 16 21-36 164-179 (454)
68 PRK09406 gabD1 succinic semial 23.7 49 0.0011 25.3 1.5 16 21-36 168-183 (457)
69 TIGR03216 OH_muco_semi_DH 2-hy 23.7 51 0.0011 25.2 1.6 16 21-36 184-199 (481)
70 PF02760 HIN: HIN-200/IF120x d 23.3 69 0.0015 23.1 2.0 20 41-60 132-151 (170)
71 cd07113 ALDH_PADH_NahF Escheri 23.2 53 0.0011 25.1 1.5 16 21-36 187-202 (477)
72 cd07103 ALDH_F5_SSADH_GabD Mit 23.1 51 0.0011 24.6 1.4 16 21-36 162-177 (451)
73 PRK13495 chemoreceptor glutami 23.0 1.5E+02 0.0032 20.4 3.6 39 20-61 108-152 (159)
74 PRK13490 chemoreceptor glutami 22.9 1.4E+02 0.0031 20.5 3.5 38 20-60 115-158 (162)
75 PF11823 DUF3343: Protein of u 22.8 20 0.00044 20.8 -0.6 26 13-38 8-33 (73)
76 cd07150 ALDH_VaniDH_like Pseud 22.8 53 0.0012 24.6 1.4 16 21-36 164-179 (451)
77 cd04492 YhaM_OBF_like YhaM_OBF 22.6 1E+02 0.0022 16.9 2.3 21 40-60 20-40 (83)
78 PRK09407 gabD2 succinic semial 22.6 52 0.0011 25.7 1.4 16 21-36 199-214 (524)
79 cd07152 ALDH_BenzADH NAD-depen 22.5 54 0.0012 24.7 1.5 15 22-36 157-171 (443)
80 cd07109 ALDH_AAS00426 Uncharac 22.5 56 0.0012 24.7 1.5 16 21-36 162-177 (454)
81 PF02655 ATP-grasp_3: ATP-gras 22.4 99 0.0021 20.1 2.5 32 21-55 6-37 (161)
82 cd07112 ALDH_GABALDH-PuuC Esch 22.3 56 0.0012 24.9 1.5 17 21-37 169-185 (462)
83 cd07089 ALDH_CddD-AldA-like Rh 22.3 56 0.0012 24.9 1.5 16 21-36 168-183 (459)
84 cd04485 DnaE_OBF DnaE_OBF: A s 22.0 1.2E+02 0.0027 16.2 2.6 21 41-61 21-41 (84)
85 cd02410 archeal_CPSF_KH The ar 22.0 1E+02 0.0022 21.5 2.6 32 19-56 51-84 (145)
86 cd07143 ALDH_AldA_AN0554 Asper 21.9 57 0.0012 25.2 1.5 17 21-37 189-205 (481)
87 cd07111 ALDH_F16 Aldehyde dehy 21.7 55 0.0012 25.4 1.4 16 21-36 192-207 (480)
88 cd07139 ALDH_AldA-Rv0768 Mycob 21.3 62 0.0013 24.6 1.6 16 21-36 182-197 (471)
89 COG3812 Uncharacterized protei 21.2 52 0.0011 24.1 1.1 16 20-35 171-186 (193)
90 TIGR02904 spore_ysxE spore coa 21.0 1.4E+02 0.003 21.1 3.2 36 24-59 3-39 (309)
91 PF01011 PQQ: PQQ enzyme repea 20.9 80 0.0017 16.0 1.5 12 42-53 12-23 (38)
92 PF02983 Pro_Al_protease: Alph 20.7 1.2E+02 0.0025 17.6 2.4 23 36-58 21-43 (62)
93 PF11213 DUF3006: Protein of u 20.3 26 0.00056 20.7 -0.5 29 27-55 21-51 (71)
94 cd07149 ALDH_y4uC Uncharacteri 20.2 67 0.0014 24.0 1.5 16 22-37 169-184 (453)
95 cd07083 ALDH_P5CDH ALDH subfam 20.1 68 0.0015 24.8 1.6 16 21-36 199-214 (500)
96 cd07148 ALDH_RL0313 Uncharacte 20.1 67 0.0014 24.4 1.5 16 21-36 169-184 (455)
97 cd07097 ALDH_KGSADH-YcbD Bacil 20.1 67 0.0014 24.5 1.5 16 21-36 180-195 (473)
98 cd07100 ALDH_SSADH1_GabD1 Myco 20.1 67 0.0015 24.2 1.5 17 21-37 141-157 (429)
99 PF03646 FlaG: FlaG protein; 20.1 74 0.0016 19.6 1.5 19 41-59 57-75 (107)
No 1
>PF04398 DUF538: Protein of unknown function, DUF538; InterPro: IPR007493 This family consists of several plant proteins of unknown function.; PDB: 1YDU_A.
Probab=99.58 E-value=1.2e-15 Score=99.60 Aligned_cols=38 Identities=45% Similarity=0.809 Sum_probs=28.8
Q ss_pred CHHHHHhhCCCCCcCCCCCcceeEeeCCCCcEEEEech
Q 048574 21 SAYDVLQEYDFPVGILPKGVTRYALNAETGELIFGTYE 58 (65)
Q Consensus 21 t~yelL~~ygLP~GLLP~gV~~Y~Ld~~tG~F~V~~y~ 58 (65)
||||+|++||||+||||++|++|+||++||.|+|++-.
T Consensus 1 tayelL~~~glP~GLLP~~v~~y~l~~~tG~f~v~l~~ 38 (110)
T PF04398_consen 1 TAYELLEEYGLPRGLLPLGVTEYGLNRDTGFFWVKLKS 38 (110)
T ss_dssp --HHHHHHHS-TT-TTTSSS-EEEE-TTT-SEEEE-SS
T ss_pred CHHHhHHHcCCCCCcCCCCceEEEEecCCcEEEEEecC
Confidence 68999999999999999999999999999999999854
No 2
>PF09351 DUF1993: Domain of unknown function (DUF1993); InterPro: IPR018531 This family of proteins are functionally uncharacterised. ; PDB: 2OQM_C 3QTH_A.
Probab=65.60 E-value=3 Score=28.70 Aligned_cols=14 Identities=36% Similarity=0.821 Sum_probs=9.7
Q ss_pred CHHHHHhhCCCCCc
Q 048574 21 SAYDVLQEYDFPVG 34 (65)
Q Consensus 21 t~yelL~~ygLP~G 34 (65)
|+|.+||..|.|.|
T Consensus 143 tAYaILR~~GV~lG 156 (162)
T PF09351_consen 143 TAYAILRHKGVPLG 156 (162)
T ss_dssp HHHHHHHHCT----
T ss_pred HHHHHHHhcCCCCC
Confidence 89999999999988
No 3
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=58.76 E-value=8.1 Score=21.89 Aligned_cols=18 Identities=22% Similarity=0.514 Sum_probs=14.2
Q ss_pred CCCHHHHHhhCCCCCcCC
Q 048574 19 EPSAYDVLQEYDFPVGIL 36 (65)
Q Consensus 19 ~~t~yelL~~ygLP~GLL 36 (65)
...+.+.|.+||+|.|=+
T Consensus 8 d~eL~~~L~~~G~~~gPI 25 (44)
T smart00540 8 DAELRAELKQYGLPPGPI 25 (44)
T ss_pred HHHHHHHHHHcCCCCCCc
Confidence 346788999999999843
No 4
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=55.23 E-value=12 Score=22.01 Aligned_cols=13 Identities=15% Similarity=0.143 Sum_probs=9.3
Q ss_pred CCCcEEEEechhh
Q 048574 48 ETGELIFGTYEQQ 60 (65)
Q Consensus 48 ~tG~F~V~~y~~~ 60 (65)
.+|.|+|.+-++.
T Consensus 41 ~~G~FEV~v~g~l 53 (76)
T PF10262_consen 41 STGAFEVTVNGEL 53 (76)
T ss_dssp STT-EEEEETTEE
T ss_pred cCCEEEEEEccEE
Confidence 5799999987653
No 5
>PF06742 DUF1214: Protein of unknown function (DUF1214); InterPro: IPR010621 This entry represents the C-terminal domain of several hypothetical proteins of unknown function. ; PDB: 3U07_A 3VB9_D 2P3Y_A.
Probab=49.40 E-value=19 Score=21.75 Aligned_cols=25 Identities=20% Similarity=0.553 Sum_probs=12.9
Q ss_pred CCCCCcceeEee-CCCCcEEEEechh
Q 048574 35 ILPKGVTRYALN-AETGELIFGTYEQ 59 (65)
Q Consensus 35 LLP~gV~~Y~Ld-~~tG~F~V~~y~~ 59 (65)
+.|.....++++ +.+|+|+|.+=.+
T Consensus 51 ~~~~~~~~~~i~~~~DGsf~i~ls~~ 76 (103)
T PF06742_consen 51 LVPNDLNRYSINSDADGSFTITLSPE 76 (103)
T ss_dssp B---TTS--EEETTTTSEEEEEEESS
T ss_pred cccccccccccccCCCccEEEEEeCC
Confidence 444434445443 5679999987543
No 6
>KOG2455 consensus Delta-1-pyrroline-5-carboxylate dehydrogenase [Amino acid transport and metabolism]
Probab=47.89 E-value=12 Score=31.19 Aligned_cols=16 Identities=31% Similarity=0.735 Sum_probs=14.0
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+|++|++-|||.|++
T Consensus 241 ii~~il~EAGlP~Gvi 256 (561)
T KOG2455|consen 241 IIYRILREAGLPPGVI 256 (561)
T ss_pred HHHHHHHHcCCCccce
Confidence 3799999999999975
No 7
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins. Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.
Probab=45.36 E-value=20 Score=19.99 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=10.9
Q ss_pred CCCCCcCCCCCcceeEeeCCCCcEEE
Q 048574 29 YDFPVGILPKGVTRYALNAETGELIF 54 (65)
Q Consensus 29 ygLP~GLLP~gV~~Y~Ld~~tG~F~V 54 (65)
.+||.|| +||..+|.++-
T Consensus 10 ~~LP~gL--------s~d~~tG~isG 27 (49)
T PF05345_consen 10 GGLPSGL--------SLDPSTGTISG 27 (49)
T ss_pred CCCCCcE--------EEeCCCCEEEe
Confidence 4667666 45666666653
No 8
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=43.45 E-value=18 Score=25.21 Aligned_cols=30 Identities=27% Similarity=0.526 Sum_probs=25.4
Q ss_pred HHhhCCCCCcCCCCCcceeEeeCCCCcEEEEe
Q 048574 25 VLQEYDFPVGILPKGVTRYALNAETGELIFGT 56 (65)
Q Consensus 25 lL~~ygLP~GLLP~gV~~Y~Ld~~tG~F~V~~ 56 (65)
.-|+|-||.|.=|..|++ +|+.+ |.++|.-
T Consensus 117 F~R~y~LP~~vdp~~V~S-~LS~d-GvLtI~a 146 (173)
T KOG3591|consen 117 FVRKYLLPEDVDPTSVTS-TLSSD-GVLTIEA 146 (173)
T ss_pred EEEEecCCCCCChhheEE-eeCCC-ceEEEEc
Confidence 457899999999999998 78864 9999973
No 9
>PF15117 UPF0697: Uncharacterised protein family UPF0697
Probab=41.43 E-value=37 Score=22.53 Aligned_cols=26 Identities=42% Similarity=0.542 Sum_probs=19.0
Q ss_pred eeEeeeec--ccccCCCCCCHHHHHhhC
Q 048574 4 IKINRITS--PFASADSEPSAYDVLQEY 29 (65)
Q Consensus 4 ~~~~~~~~--~~~s~~~~~t~yelL~~y 29 (65)
-||.||++ +...+.+.|..||-+.+-
T Consensus 40 rkImRifs~ppt~~~~~epnfyd~~~ki 67 (99)
T PF15117_consen 40 RKIMRIFSVPPTAETLTEPNFYDSMSKI 67 (99)
T ss_pred ceEEEEEecCCCCCCCCCCcHHHHHHHH
Confidence 47899988 344467788999987653
No 10
>PF15537 Toxin_59: Putative toxin 59
Probab=37.25 E-value=29 Score=23.92 Aligned_cols=27 Identities=19% Similarity=0.575 Sum_probs=22.1
Q ss_pred HHHhhCCCCCcCCCCCcceeEeeCCCCcEEEEe
Q 048574 24 DVLQEYDFPVGILPKGVTRYALNAETGELIFGT 56 (65)
Q Consensus 24 elL~~ygLP~GLLP~gV~~Y~Ld~~tG~F~V~~ 56 (65)
..+++|+ |++-..|.||++++.|.|-.
T Consensus 41 ~avrNy~------p~G~~eFVFDP~~~~Fa~G~ 67 (125)
T PF15537_consen 41 KAVRNYY------PSGSIEFVFDPKTNRFAVGS 67 (125)
T ss_pred hHHhccC------CCCCccEEEcCCcCeEeecC
Confidence 4567775 58888999999999998854
No 11
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.15 E-value=35 Score=21.06 Aligned_cols=32 Identities=13% Similarity=0.337 Sum_probs=25.6
Q ss_pred HHHHHhhCCCCCcCCCCCcceeEeeCCCCcEE
Q 048574 22 AYDVLQEYDFPVGILPKGVTRYALNAETGELI 53 (65)
Q Consensus 22 ~yelL~~ygLP~GLLP~gV~~Y~Ld~~tG~F~ 53 (65)
+-++|++||.|.=.+|.|+.+.++=-++-.++
T Consensus 21 ~L~I~E~~~is~Eh~PSGID~~Siii~~~~~~ 52 (76)
T cd04911 21 LLSILEDNGISYEHMPSGIDDISIIIRDNQLT 52 (76)
T ss_pred HHHHHHHcCCCEeeecCCCccEEEEEEccccc
Confidence 45799999999999999999888765544444
No 12
>PRK05231 homoserine kinase; Provisional
Probab=36.16 E-value=75 Score=22.16 Aligned_cols=39 Identities=21% Similarity=0.533 Sum_probs=28.3
Q ss_pred CCHHHHHhhCCCC--CcC--CCCCc--ceeEeeCCCCcEEEEech
Q 048574 20 PSAYDVLQEYDFP--VGI--LPKGV--TRYALNAETGELIFGTYE 58 (65)
Q Consensus 20 ~t~yelL~~ygLP--~GL--LP~gV--~~Y~Ld~~tG~F~V~~y~ 58 (65)
..+-++|+.||+. .-+ +..|. +.|.++.++|+|-+++|+
T Consensus 10 ~~l~~~l~~y~~~~~~~~~~l~~G~~n~~y~v~t~~g~~vLK~~~ 54 (319)
T PRK05231 10 DELAAFLAPYDLGELLSLKGIAEGIENSNFFLTTTQGEYVLTLFE 54 (319)
T ss_pred HHHHHHHHhcCCchhhccchhccccccceEEEEeCCCcEEEEEec
Confidence 3467899999982 122 33444 479998888999999885
No 13
>TIGR00938 thrB_alt homoserine kinase, Neisseria type. Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.
Probab=35.88 E-value=63 Score=22.68 Aligned_cols=43 Identities=28% Similarity=0.535 Sum_probs=30.1
Q ss_pred CCCCCHHHHHhhCCCC--CcCCC--CCc--ceeEeeCCCCcEEEEechh
Q 048574 17 DSEPSAYDVLQEYDFP--VGILP--KGV--TRYALNAETGELIFGTYEQ 59 (65)
Q Consensus 17 ~~~~t~yelL~~ygLP--~GLLP--~gV--~~Y~Ld~~tG~F~V~~y~~ 59 (65)
.+...+-++|++|++- .-+-| .|. ..|.++.++|+|-++.|..
T Consensus 7 ~~~~~l~~~l~~y~~~~~~~i~~~~~G~~n~~y~v~t~~~~~vLK~~~~ 55 (307)
T TIGR00938 7 VSDEEMSSFLDGYDLGELLSLKGIAEGVENSNYLLTTDVGRYILTLYEK 55 (307)
T ss_pred CCHHHHHHHHHhcCCCCceeccccCCccccceEEEEeCCCcEEEEEecC
Confidence 3346788999999883 22333 343 4799988889999988743
No 14
>PRK09293 fructose-1,6-bisphosphatase; Provisional
Probab=35.87 E-value=34 Score=25.97 Aligned_cols=18 Identities=28% Similarity=0.676 Sum_probs=15.8
Q ss_pred CCcceeEeeCCCCcEEEE
Q 048574 38 KGVTRYALNAETGELIFG 55 (65)
Q Consensus 38 ~gV~~Y~Ld~~tG~F~V~ 55 (65)
++|..|+||+++|+|.+.
T Consensus 170 ~gv~~ftld~~~g~f~l~ 187 (327)
T PRK09293 170 DGVHGFTLDPSLGEFVLT 187 (327)
T ss_pred CCEEEEEEeCCCCeEEEe
Confidence 689999999999999754
No 15
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=35.87 E-value=19 Score=22.94 Aligned_cols=16 Identities=38% Similarity=0.623 Sum_probs=12.9
Q ss_pred CCHHHHHhhCCCCCcC
Q 048574 20 PSAYDVLQEYDFPVGI 35 (65)
Q Consensus 20 ~t~yelL~~ygLP~GL 35 (65)
+.+.+.|+.+|||.|=
T Consensus 14 ~~l~~Fl~~~~~P~G~ 29 (100)
T PF09949_consen 14 PFLRDFLRRNGFPAGP 29 (100)
T ss_pred HHHHHHHHhcCCCCCc
Confidence 4667788899999984
No 16
>PF00316 FBPase: Fructose-1-6-bisphosphatase; InterPro: IPR000146 This entry represents the fructose-1,6-bisphosphatase (FBPase) class 1 family. FBPase is a critical regulatory enzyme in gluconeogenesis that catalyses the removal of 1-phosphate from fructose 1,6-bis-phosphate to form fructose 6-phosphate [, ]. It is involved in many different metabolic pathways and found in most organisms. FBPase requires metal ions for catalysis (Mg2+ and Mn2+ being preferred) and the enzyme is potently inhibited by Li+. The fold of fructose-1,6-bisphosphatase was noted to be identical to that of inositol-1-phosphatase (IMPase) []. Inositol polyphosphate 1-phosphatase (IPPase), IMPase and FBPase share a sequence motif (Asp-Pro-Ile/Leu-Asp-Gly/Ser-Thr/Ser) which has been shown to bind metal ions and participate in catalysis. This motif is also found in the distantly-related fungal, bacterial and yeast IMPase homologues. It has been suggested that these proteins define an ancient structurally conserved family involved in diverse metabolic pathways, including inositol signalling, gluconeogenesis, sulphate assimilation and possibly quinone metabolism []. This entry also includes sedoheptulose-1,7-bisphosphatase, which is a member of the FBPase class 1 family.; GO: 0042578 phosphoric ester hydrolase activity, 0005975 carbohydrate metabolic process; PDB: 2GQ1_A 2QVR_A 2Q8M_B 2OX3_A 2OWZ_A 3KC0_C 2WBB_A 1FTA_C 2VT5_F 2Y5L_F ....
Probab=34.97 E-value=28 Score=26.65 Aligned_cols=17 Identities=35% Similarity=0.804 Sum_probs=15.4
Q ss_pred CCcceeEeeCCCCcEEE
Q 048574 38 KGVTRYALNAETGELIF 54 (65)
Q Consensus 38 ~gV~~Y~Ld~~tG~F~V 54 (65)
.+|..|+||+++|+|.+
T Consensus 169 ~gV~~FtLD~~~g~F~l 185 (324)
T PF00316_consen 169 SGVHGFTLDPSTGEFVL 185 (324)
T ss_dssp TEEEEEEEETTTTEEEE
T ss_pred CcEeEEEEeCCCCEEEE
Confidence 47999999999999986
No 17
>PF11426 Tn7_TnsC_Int: Tn7 transposition regulator TnsC; InterPro: IPR021542 TnsC is a molecular switch that regulates transposition and interacts with TnsA which is a component of the transposase. The two proteins interact via the residues 504-555 on TnsC. The TnsA/TnsC interaction is very important in Tn7 transposition []. ; PDB: 1T0F_C.
Probab=34.59 E-value=32 Score=19.85 Aligned_cols=15 Identities=27% Similarity=0.581 Sum_probs=10.8
Q ss_pred CCCCCHHHHHhhCCC
Q 048574 17 DSEPSAYDVLQEYDF 31 (65)
Q Consensus 17 ~~~~t~yelL~~ygL 31 (65)
.++.++|+.|...|+
T Consensus 22 ~~~~~~y~~Lk~~Gl 36 (48)
T PF11426_consen 22 DNSESVYEALKQNGL 36 (48)
T ss_dssp -TTS-HHHHHHHTTS
T ss_pred CchHHHHHHHHHCCe
Confidence 444589999999986
No 18
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.
Probab=34.21 E-value=43 Score=20.69 Aligned_cols=19 Identities=11% Similarity=0.247 Sum_probs=16.4
Q ss_pred ceeEeeCCCCcEEEEechh
Q 048574 41 TRYALNAETGELIFGTYEQ 59 (65)
Q Consensus 41 ~~Y~Ld~~tG~F~V~~y~~ 59 (65)
..|.||+.||..++..+..
T Consensus 16 ~~~tLdDgTG~Ie~~~W~~ 34 (92)
T cd04483 16 YSFGVDDGTGVVNCVCWKN 34 (92)
T ss_pred EEEEEecCCceEEEEEEcC
Confidence 5799999999999988764
No 19
>TIGR02503 type_III_SycN type III secretion chaperone SycN. Members of this protein family are part of the machinery of bacterial type III secretion in a number of bacteria that target animal cells. In the well-studied system from Yersinia, a complex of this protein (SycN) and YscB (pfam07329) acts as a chaperone for the export of YopN (PubMed:10094626). YopN then acts to control effector protein secretion, in response to calcium levels, so that secretion occurs only after contact with the targeted eukaryotic cell.
Probab=34.17 E-value=76 Score=21.38 Aligned_cols=40 Identities=10% Similarity=0.184 Sum_probs=33.0
Q ss_pred CCHHHHHhhCCCCCcCCCCCcceeEeeCCCCcEEEEechhh
Q 048574 20 PSAYDVLQEYDFPVGILPKGVTRYALNAETGELIFGTYEQQ 60 (65)
Q Consensus 20 ~t~yelL~~ygLP~GLLP~gV~~Y~Ld~~tG~F~V~~y~~~ 60 (65)
+++.+..+.-|+|..-.|.++..++++. .|++.++=++..
T Consensus 3 ~~l~qF~q~mG~~~~~~~~~~i~l~~e~-~gtL~iE~~~~~ 42 (119)
T TIGR02503 3 RALAQFCQDLGLPTPAPLPRLAQLSMEQ-SGRLYVEQHDGT 42 (119)
T ss_pred HHHHHHHHHcCCCCCCCCCcceEEEecC-CcEEEEEecCCE
Confidence 5678999999999998888899999985 599988765544
No 20
>PLN02262 fructose-1,6-bisphosphatase
Probab=34.09 E-value=34 Score=26.41 Aligned_cols=18 Identities=33% Similarity=0.678 Sum_probs=15.9
Q ss_pred CCcceeEeeCCCCcEEEE
Q 048574 38 KGVTRYALNAETGELIFG 55 (65)
Q Consensus 38 ~gV~~Y~Ld~~tG~F~V~ 55 (65)
.+|..|+||+++|+|.+.
T Consensus 182 ~gv~~Ftld~~~gef~lt 199 (340)
T PLN02262 182 GGVNGFTLDPSLGEFILT 199 (340)
T ss_pred CCeeEEEEcCCCCEEEEe
Confidence 689999999999999764
No 21
>smart00469 WIF Wnt-inhibitory factor-1 like domain. Occurs as extracellular domain in metazoan Ryk receptor tyrosine kinases. C. elegans Ryk is required for cell-cuticle recognition. WIF-1 binds to Wnt and inhibits its activity.
Probab=32.99 E-value=67 Score=22.06 Aligned_cols=35 Identities=14% Similarity=0.320 Sum_probs=27.7
Q ss_pred HHH--hhCCCC-CcCCCCCcceeEee-----CCCCcEEEEech
Q 048574 24 DVL--QEYDFP-VGILPKGVTRYALN-----AETGELIFGTYE 58 (65)
Q Consensus 24 elL--~~ygLP-~GLLP~gV~~Y~Ld-----~~tG~F~V~~y~ 58 (65)
++| ..-+.| .|.+|+..+.|++. ..+|+|+|.++-
T Consensus 71 ~vl~~P~lnI~~~G~VP~~~~~f~V~l~CsG~~sa~~~V~l~l 113 (136)
T smart00469 71 EVLPRPIVNISLLGTVPHTLQVFQVELKCSGKRDAEVEVTVIV 113 (136)
T ss_pred HHcCCCcccccccccCCCCcEEEEEEEEecCCcceEEEEEEEE
Confidence 566 566788 89999999999884 345899998763
No 22
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=32.98 E-value=74 Score=18.97 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=13.5
Q ss_pred CCCCHHHHHhhCCCCC
Q 048574 18 SEPSAYDVLQEYDFPV 33 (65)
Q Consensus 18 ~~~t~yelL~~ygLP~ 33 (65)
...|+-|.|++.|++.
T Consensus 18 ~~~tlL~a~~~~gi~~ 33 (84)
T PRK10713 18 EHPSLLAALESHNVAV 33 (84)
T ss_pred CCCcHHHHHHHcCCCC
Confidence 3479999999999974
No 23
>cd00354 FBPase Fructose-1,6-bisphosphatase, an enzyme that catalyzes the hydrolysis of fructose-1,6-biphosphate into fructose-6-phosphate and is critical in gluconeogenesis pathway. The alignment model also includes chloroplastic FBPases and sedoheptulose-1,7-biphosphatases that play a role in pentose phosphate pathway (Calvin cycle).
Probab=32.72 E-value=36 Score=25.69 Aligned_cols=18 Identities=33% Similarity=0.711 Sum_probs=16.1
Q ss_pred CCcceeEeeCCCCcEEEE
Q 048574 38 KGVTRYALNAETGELIFG 55 (65)
Q Consensus 38 ~gV~~Y~Ld~~tG~F~V~ 55 (65)
.+|..|+||+++|+|.+.
T Consensus 163 ~gv~~ftld~~~g~f~lt 180 (315)
T cd00354 163 QGVHGFTLDPSLGEFILT 180 (315)
T ss_pred CceEEEEEcCCCCeEEEe
Confidence 789999999989999764
No 24
>PLN02628 fructose-1,6-bisphosphatase family protein
Probab=32.56 E-value=38 Score=26.42 Aligned_cols=18 Identities=28% Similarity=0.656 Sum_probs=15.8
Q ss_pred CCcceeEeeCCCCcEEEE
Q 048574 38 KGVTRYALNAETGELIFG 55 (65)
Q Consensus 38 ~gV~~Y~Ld~~tG~F~V~ 55 (65)
.+|..|+||+++|+|.+.
T Consensus 192 ~gv~~Ftld~~~geF~lt 209 (351)
T PLN02628 192 SGTHGFTLDHSTGEFVLT 209 (351)
T ss_pred CCeeEEEEeCCCCEEEEe
Confidence 689999999999999753
No 25
>PF14567 SUKH_5: SMI1-KNR4 cell-wall; PDB: 2PAG_A.
Probab=32.42 E-value=18 Score=24.44 Aligned_cols=30 Identities=23% Similarity=0.462 Sum_probs=18.1
Q ss_pred CHHHHHhhCCCCCcCCC---CCcceeEeeCCCCc
Q 048574 21 SAYDVLQEYDFPVGILP---KGVTRYALNAETGE 51 (65)
Q Consensus 21 t~yelL~~ygLP~GLLP---~gV~~Y~Ld~~tG~ 51 (65)
.+..-+++.|+|+-++| .+=.-|-|++ +|+
T Consensus 73 e~~~~ar~~glP~~~ipice~~~~yYcl~~-~g~ 105 (132)
T PF14567_consen 73 EVTADARSIGLPRELIPICEDGGDYYCLDQ-EGE 105 (132)
T ss_dssp HHHHHHHHHT--TTSEEEEEETTEEEEE-T-TS-
T ss_pred HHHHHHHHcCCChhheeEEecCCcEEEEeC-CCe
Confidence 34445678999999999 4545677885 476
No 26
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=31.09 E-value=30 Score=22.69 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=17.6
Q ss_pred CCHHHHHhhCCCCCcCCCCCcceeEeeCC
Q 048574 20 PSAYDVLQEYDFPVGILPKGVTRYALNAE 48 (65)
Q Consensus 20 ~t~yelL~~ygLP~GLLP~gV~~Y~Ld~~ 48 (65)
.=+-|.|++|||-. ....+|.|-+-
T Consensus 30 ~vV~eALeKygL~~----e~p~~Y~LveV 54 (100)
T cd01781 30 RIVGEALEKYGLEK----SDPDDYCLVEV 54 (100)
T ss_pred HHHHHHHHHhCCCc----cCccceEEEEE
Confidence 34578899999853 45778887653
No 27
>cd07102 ALDH_EDX86601 Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (locus EDX86601) and other similar sequences, are present in this CD.
Probab=31.05 E-value=32 Score=25.83 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=13.6
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.++|++.|||.|++
T Consensus 161 ~l~~~l~~aGlP~g~~ 176 (452)
T cd07102 161 RFAAAFAEAGLPEGVF 176 (452)
T ss_pred HHHHHHHhcCCCcCcE
Confidence 4689999999999974
No 28
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=30.76 E-value=35 Score=20.09 Aligned_cols=32 Identities=9% Similarity=0.346 Sum_probs=23.3
Q ss_pred CCHHHHHhhCCCCCcCCCCCcceeEeeCCCCc
Q 048574 20 PSAYDVLQEYDFPVGILPKGVTRYALNAETGE 51 (65)
Q Consensus 20 ~t~yelL~~ygLP~GLLP~gV~~Y~Ld~~tG~ 51 (65)
..+.+.|.++|.++-++|.+..+++|--....
T Consensus 19 ~~If~~la~~~I~vd~I~~s~~~isftv~~~~ 50 (73)
T cd04934 19 ARIFAILDKYRLSVDLISTSEVHVSMALHMEN 50 (73)
T ss_pred HHHHHHHHHcCCcEEEEEeCCCEEEEEEehhh
Confidence 36778999999999999976665555433333
No 29
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=30.44 E-value=40 Score=18.16 Aligned_cols=25 Identities=12% Similarity=0.409 Sum_probs=19.5
Q ss_pred CCHHHHHhhCCCCCcCCCCCcceeE
Q 048574 20 PSAYDVLQEYDFPVGILPKGVTRYA 44 (65)
Q Consensus 20 ~t~yelL~~ygLP~GLLP~gV~~Y~ 44 (65)
..+.+.|+++|.+.-++|.+..+.+
T Consensus 18 ~~if~~l~~~~i~v~~i~t~~~~is 42 (62)
T cd04890 18 RKIFEILEKHGISVDLIPTSENSVT 42 (62)
T ss_pred HHHHHHHHHcCCeEEEEecCCCEEE
Confidence 3577899999999999987554433
No 30
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=29.93 E-value=72 Score=18.50 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=13.9
Q ss_pred CCCCCHHHHHhhCCCCC
Q 048574 17 DSEPSAYDVLQEYDFPV 33 (65)
Q Consensus 17 ~~~~t~yelL~~ygLP~ 33 (65)
.+..|+.|+|++.|+|.
T Consensus 21 ~~~~tv~~ll~~l~~~~ 37 (70)
T PRK08364 21 RKGMKVADILRAVGFNT 37 (70)
T ss_pred CCCCcHHHHHHHcCCCC
Confidence 44569999999999874
No 31
>cd07147 ALDH_F21_RNP123 Aldehyde dehydrogenase family 21A1-like. Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was first described in the moss Tortula ruralis and is believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and ALDH21A1 expression represents a unique stress tolerance mechanism. So far, of plants, only the bryophyte sequence has been observed, but similar protein sequences from bacteria and archaea are also present in this CD.
Probab=29.64 E-value=35 Score=25.68 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=13.6
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.++|++.|||.|++
T Consensus 168 ~l~~~l~~ag~P~g~v 183 (452)
T cd07147 168 ILGEVLAETGLPKGAF 183 (452)
T ss_pred HHHHHHHHcCCCcCcE
Confidence 3689999999999965
No 32
>cd07090 ALDH_F9_TMBADH NAD+-dependent 4-trimethylaminobutyraldehyde dehydrogenase, ALDH family 9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde dehydrogenase (TMABADH, EC=1.2.1.47), also known as aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in humans, is a cytosolic tetramer which catalyzes the oxidation of gamma-aminobutyraldehyde involved in 4-aminobutyric acid (GABA) biosynthesis and also oxidizes betaine aldehyde (gamma-trimethylaminobutyraldehyde) which is involved in carnitine biosynthesis.
Probab=29.60 E-value=34 Score=25.86 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=13.9
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.+++++.|||.|++
T Consensus 161 ~l~~~~~~aGlP~g~~ 176 (457)
T cd07090 161 LLAEILTEAGLPDGVF 176 (457)
T ss_pred HHHHHHHHcCCCcccE
Confidence 4689999999999975
No 33
>PLN02542 fructose-1,6-bisphosphatase
Probab=29.57 E-value=43 Score=26.76 Aligned_cols=18 Identities=28% Similarity=0.597 Sum_probs=15.9
Q ss_pred CCcceeEeeCCCCcEEEE
Q 048574 38 KGVTRYALNAETGELIFG 55 (65)
Q Consensus 38 ~gV~~Y~Ld~~tG~F~V~ 55 (65)
.||..|+||+++|+|.+.
T Consensus 259 ~GV~~FtLDp~~geFvLt 276 (412)
T PLN02542 259 TGVFSFTLDPMYGEFVLT 276 (412)
T ss_pred CCEEEEEEcCCCCeEEEe
Confidence 699999999999999753
No 34
>cd07104 ALDH_BenzADH-like ALDH subfamily: NAD(P)+-dependent benzaldehyde dehydrogenase II, vanillin dehydrogenase, p-hydroxybenzaldehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) involved in the oxidation of benzyl alcohol to benzoate; p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes the oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid; vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid as seen in Pseudomonas putida KT2440; and other related sequences.
Probab=29.56 E-value=34 Score=25.37 Aligned_cols=15 Identities=27% Similarity=0.658 Sum_probs=13.2
Q ss_pred HHHHHhhCCCCCcCC
Q 048574 22 AYDVLQEYDFPVGIL 36 (65)
Q Consensus 22 ~yelL~~ygLP~GLL 36 (65)
+.++|++.|||.|++
T Consensus 145 l~~~l~~aGlP~gvv 159 (431)
T cd07104 145 IAEIFEEAGLPKGVL 159 (431)
T ss_pred HHHHHHHcCCCcccE
Confidence 689999999999865
No 35
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=28.92 E-value=40 Score=21.27 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=28.8
Q ss_pred CCCCCHHHHHhhCCCC-CcCCCCCcceeEeeCCCCcEEEEe
Q 048574 17 DSEPSAYDVLQEYDFP-VGILPKGVTRYALNAETGELIFGT 56 (65)
Q Consensus 17 ~~~~t~yelL~~ygLP-~GLLP~gV~~Y~Ld~~tG~F~V~~ 56 (65)
...+.+-++|+++|++ .|.-|+.++.+.+.. -.+-|.+
T Consensus 40 ~~~p~a~~~l~e~Gid~~~~~s~~l~~~~~~~--~D~iitm 78 (126)
T TIGR02689 40 RVHPTAIEVMSEIGIDISGQTSKPLENFHPED--YDVVISL 78 (126)
T ss_pred CCCHHHHHHHHHhCCCcccCccccCChhHhcC--CCEEEEe
Confidence 4567889999999997 588999999887653 3455544
No 36
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=28.86 E-value=26 Score=24.48 Aligned_cols=36 Identities=8% Similarity=0.336 Sum_probs=29.5
Q ss_pred CCCCCCHHHHHhhCCCCCcCCCCC-------cceeEeeCCCCc
Q 048574 16 ADSEPSAYDVLQEYDFPVGILPKG-------VTRYALNAETGE 51 (65)
Q Consensus 16 ~~~~~t~yelL~~ygLP~GLLP~g-------V~~Y~Ld~~tG~ 51 (65)
...-+-+.++|+.|+++.+|+|++ +..|.+.+.+|.
T Consensus 8 ~~Di~~I~~Li~~~~~~gil~~rs~~~le~~i~dF~i~E~~g~ 50 (153)
T COG1246 8 ISDIPAILELIRPLELQGILLRRSREQLEEEIDDFTIIERDGK 50 (153)
T ss_pred ccchHHHHHHHHHHhhccccchhhHHHHHHHHhhheeeeeCCc
Confidence 355678999999999999999975 468888887776
No 37
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=28.85 E-value=53 Score=19.73 Aligned_cols=15 Identities=13% Similarity=0.226 Sum_probs=13.5
Q ss_pred CCCHHHHHhhCCCCC
Q 048574 19 EPSAYDVLQEYDFPV 33 (65)
Q Consensus 19 ~~t~yelL~~ygLP~ 33 (65)
..|+.|+|++.||+.
T Consensus 17 ~~tv~dLL~~l~~~~ 31 (68)
T COG2104 17 GTTVADLLAQLGLNP 31 (68)
T ss_pred CCcHHHHHHHhCCCC
Confidence 379999999999996
No 38
>cd07101 ALDH_SSADH2_GabD2 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 2-like. Succinate-semialdehyde dehydrogenase 2 (SSADH2) and similar proteins are in this CD. SSADH1 (GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde to succinate. SSADH activity in Mycobacterium tuberculosis is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1 was shown to be much higher than that of GabD2, and GabD2 (SSADH2) is likely to serve physiologically as a dehydrogenase for a different aldehyde(s).
Probab=27.74 E-value=38 Score=25.62 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=13.7
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.++|++.|||.|++
T Consensus 163 ~l~~~~~~aglP~gv~ 178 (454)
T cd07101 163 WAVELLIEAGLPRDLW 178 (454)
T ss_pred HHHHHHHHcCcCCCcE
Confidence 3589999999999976
No 39
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=27.44 E-value=85 Score=19.90 Aligned_cols=40 Identities=20% Similarity=0.357 Sum_probs=23.0
Q ss_pred CCHHHHHhhCCCCC------cCCCCCcceeEeeCCCCcEEEEechhhhh
Q 048574 20 PSAYDVLQEYDFPV------GILPKGVTRYALNAETGELIFGTYEQQLQ 62 (65)
Q Consensus 20 ~t~yelL~~ygLP~------GLLP~gV~~Y~Ld~~tG~F~V~~y~~~~~ 62 (65)
..+-++|+++|+|+ |-.+.. =.||..||+..|...+...|
T Consensus 67 ~~a~~~L~~~gi~I~a~dvGG~~~R~---v~f~~~tG~v~vk~~~~~~~ 112 (114)
T PF03975_consen 67 EAARELLAEEGIPIVAEDVGGNFGRK---VRFDPATGEVWVKRIGREEK 112 (114)
T ss_dssp HHHHHHHHHTT--EEEEEE-SSS-EE---EEEETTTTEEEEE-------
T ss_pred HHHHHHHHHCCCcEEEeeCCCCCCcE---EEEEcCCCEEEEEECCCccc
Confidence 35789999999995 444443 45788899999988776654
No 40
>PF03020 LEM: LEM domain; InterPro: IPR003887 The LEM domain is found in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin []. Defects in the emerin gene are a cause of Emery-Dreifuss muscular dystrophy, an X-linked disorder characterised by early contractures, muscle wasting, weakness and cardiomyopathy.; GO: 0005635 nuclear envelope; PDB: 2ODG_C 2ODC_I 1JEI_A 1H9F_A 1GJJ_A.
Probab=27.38 E-value=16 Score=20.69 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=11.6
Q ss_pred CCCCCHHHHHhhCCCCCcCC
Q 048574 17 DSEPSAYDVLQEYDFPVGIL 36 (65)
Q Consensus 17 ~~~~t~yelL~~ygLP~GLL 36 (65)
-+...+.+.|+++|++.|=+
T Consensus 6 LSd~ELr~~L~~~G~~~GPI 25 (43)
T PF03020_consen 6 LSDEELREELREYGEPPGPI 25 (43)
T ss_dssp C-CCCCHHCCCCCT-S----
T ss_pred cCHHHHHHHHHHcCCCCCCC
Confidence 44557889999999999844
No 41
>cd07091 ALDH_F1-2_Ald2-like ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins. ALDH subfamily which includes the NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36), also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1), in humans, a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1), in humans, a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the co
Probab=27.36 E-value=39 Score=25.73 Aligned_cols=16 Identities=25% Similarity=0.611 Sum_probs=13.6
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.++|++.|||.|++
T Consensus 186 ~l~~~~~~aglP~g~~ 201 (476)
T cd07091 186 YLAELIKEAGFPPGVV 201 (476)
T ss_pred HHHHHHHHcCcCCCcE
Confidence 4689999999999965
No 42
>cd07131 ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like. Uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105) and similar sequences with similarity to alpha-aminoadipic semialdehyde dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31), Arabidopsis ALDH7B4, and Streptomyces clavuligerus delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH) are included in this CD.
Probab=27.27 E-value=40 Score=25.64 Aligned_cols=16 Identities=19% Similarity=0.519 Sum_probs=13.5
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.++|++.|||.|++
T Consensus 180 ~l~~~l~~aGlP~gvv 195 (478)
T cd07131 180 KLVELFAEAGLPPGVV 195 (478)
T ss_pred HHHHHHHhcCcCCCcE
Confidence 3579999999999875
No 43
>cd07119 ALDH_BADH-GbsA Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like. Included in this CD is the NAD+-dependent, betaine aldehyde dehydrogenase (BADH, GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the synthesis of the osmoprotectant glycine betaine from choline or glycine betaine aldehyde.
Probab=27.17 E-value=40 Score=25.69 Aligned_cols=16 Identities=19% Similarity=0.764 Sum_probs=13.7
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.+++++.|||.|++
T Consensus 179 ~l~~~~~~aGlP~gv~ 194 (482)
T cd07119 179 ALFELIEEAGLPAGVV 194 (482)
T ss_pred HHHHHHHHcCCCcCcE
Confidence 4689999999999975
No 44
>PF14974 DUF4511: Domain of unknown function (DUF4511)
Probab=27.00 E-value=40 Score=22.34 Aligned_cols=11 Identities=36% Similarity=0.969 Sum_probs=9.4
Q ss_pred HHHHhhCCCCC
Q 048574 23 YDVLQEYDFPV 33 (65)
Q Consensus 23 yelL~~ygLP~ 33 (65)
-++.++||||.
T Consensus 54 ~~VIk~yGF~~ 64 (105)
T PF14974_consen 54 MEVIKKYGFPE 64 (105)
T ss_pred HHHHHHcCCCC
Confidence 47899999996
No 45
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam
Probab=26.71 E-value=80 Score=18.46 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=17.2
Q ss_pred CcceeEeeCCCCcEEEEechh
Q 048574 39 GVTRYALNAETGELIFGTYEQ 59 (65)
Q Consensus 39 gV~~Y~Ld~~tG~F~V~~y~~ 59 (65)
.-..|+|++.||+.++..+..
T Consensus 16 ~~~~~tL~D~TG~I~~~~W~~ 36 (95)
T cd04478 16 TNITYTIDDGTGTIEVRQWLD 36 (95)
T ss_pred cEEEEEEECCCCcEEEEEeCC
Confidence 446899999999999888753
No 46
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the central domain and is found in association with PF00438 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3S82_B 2OBV_A 3RV2_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C 1XRB_A 1MXA_A 1MXB_A ....
Probab=26.27 E-value=32 Score=22.99 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=14.4
Q ss_pred hCCCCCcCCCCCcceeEeeCCCCcE
Q 048574 28 EYDFPVGILPKGVTRYALNAETGEL 52 (65)
Q Consensus 28 ~ygLP~GLLP~gV~~Y~Ld~~tG~F 52 (65)
+.=+|..++.+. +.|-+|++ |+|
T Consensus 98 ~~v~~~~~~~~~-t~~~INPt-GrF 120 (120)
T PF02772_consen 98 KPVIPEYLLDED-TKILINPT-GRF 120 (120)
T ss_dssp HHHSHGGG-BTT--EEEESTT-S--
T ss_pred HHhcccccCCCC-cEEEECCC-CCC
Confidence 345677777777 99999985 998
No 47
>cd07144 ALDH_ALD2-YMR170C Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5) and other similar sequences, are present in this CD.
Probab=25.93 E-value=42 Score=25.69 Aligned_cols=16 Identities=25% Similarity=0.557 Sum_probs=13.7
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.++|++.|||.|++
T Consensus 189 ~l~~~~~~aglP~gv~ 204 (484)
T cd07144 189 YFANLVKEAGFPPGVV 204 (484)
T ss_pred HHHHHHHHhCcCCCcE
Confidence 3689999999999876
No 48
>cd07110 ALDH_F10_BADH Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like. Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine.
Probab=25.64 E-value=44 Score=25.20 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=13.3
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.+++++.|||.|++
T Consensus 165 ~l~~~~~~aGlP~gvv 180 (456)
T cd07110 165 ELAEIAAEAGLPPGVL 180 (456)
T ss_pred HHHHHHHHcCCCCCcE
Confidence 4678999999998865
No 49
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=25.64 E-value=52 Score=25.93 Aligned_cols=17 Identities=35% Similarity=0.749 Sum_probs=14.8
Q ss_pred CcceeEeeCCCCcEEEE
Q 048574 39 GVTRYALNAETGELIFG 55 (65)
Q Consensus 39 gV~~Y~Ld~~tG~F~V~ 55 (65)
+|.+|.+|+++|+|+.-
T Consensus 65 gvaay~iD~~~G~Lt~l 81 (346)
T COG2706 65 GVAAYRIDPDDGRLTFL 81 (346)
T ss_pred cEEEEEEcCCCCeEEEe
Confidence 78999999989999863
No 50
>cd07151 ALDH_HBenzADH NADP+-dependent p-hydroxybenzaldehyde dehydrogenase-like. NADP+-dependent, p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid and other related sequences are included in this CD.
Probab=25.59 E-value=45 Score=25.37 Aligned_cols=15 Identities=27% Similarity=0.600 Sum_probs=13.1
Q ss_pred HHHHHhhCCCCCcCC
Q 048574 22 AYDVLQEYDFPVGIL 36 (65)
Q Consensus 22 ~yelL~~ygLP~GLL 36 (65)
+.++|++.|||.|++
T Consensus 177 l~~~l~~aG~P~gvv 191 (465)
T cd07151 177 LAKIFEEAGLPKGVL 191 (465)
T ss_pred HHHHHHHcCcCccce
Confidence 588999999998876
No 51
>cd07093 ALDH_F8_HMSADH Human aldehyde dehydrogenase family 8 member A1-like. In humans, the aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC of Burkholderia cepacia G4, and AphC of Comamonas testosterone.
Probab=25.37 E-value=48 Score=24.91 Aligned_cols=17 Identities=18% Similarity=0.362 Sum_probs=14.2
Q ss_pred CHHHHHhhCCCCCcCCC
Q 048574 21 SAYDVLQEYDFPVGILP 37 (65)
Q Consensus 21 t~yelL~~ygLP~GLLP 37 (65)
-+.++|++.|||.|++-
T Consensus 162 ~l~~~l~~aglP~g~v~ 178 (455)
T cd07093 162 LLAELANEAGLPPGVVN 178 (455)
T ss_pred HHHHHHHhcCCCccceE
Confidence 46899999999988764
No 52
>PRK06437 hypothetical protein; Provisional
Probab=25.32 E-value=74 Score=18.49 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=13.8
Q ss_pred CCCCCHHHHHhhCCCCC
Q 048574 17 DSEPSAYDVLQEYDFPV 33 (65)
Q Consensus 17 ~~~~t~yelL~~ygLP~ 33 (65)
....|+.|+|++.|+|.
T Consensus 18 ~~~~tv~dLL~~Lgi~~ 34 (67)
T PRK06437 18 DHELTVNDIIKDLGLDE 34 (67)
T ss_pred CCCCcHHHHHHHcCCCC
Confidence 34469999999999973
No 53
>PLN02766 coniferyl-aldehyde dehydrogenase
Probab=25.28 E-value=44 Score=26.02 Aligned_cols=16 Identities=13% Similarity=0.162 Sum_probs=13.5
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.+++++.|||.|++
T Consensus 203 ~l~~~~~~aGlP~gvv 218 (501)
T PLN02766 203 FYAHLAKLAGVPDGVI 218 (501)
T ss_pred HHHHHHHhcCCCcCcE
Confidence 3578999999999876
No 54
>PRK13968 putative succinate semialdehyde dehydrogenase; Provisional
Probab=25.19 E-value=44 Score=25.64 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=12.9
Q ss_pred HHHHHhhCCCCCcCC
Q 048574 22 AYDVLQEYDFPVGIL 36 (65)
Q Consensus 22 ~yelL~~ygLP~GLL 36 (65)
+.+++++.|||.|++
T Consensus 172 l~~~~~~aGlP~gv~ 186 (462)
T PRK13968 172 IAQVFKDAGIPQGVY 186 (462)
T ss_pred HHHHHHHcCcCcCcE
Confidence 578899999999974
No 55
>cd07138 ALDH_CddD_SSP0762 Rhodococcus ruber 6-oxolauric acid dehydrogenase-like. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid, and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and other similar sequences, are included in this CD.
Probab=25.16 E-value=46 Score=25.25 Aligned_cols=16 Identities=25% Similarity=0.592 Sum_probs=13.5
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.++|++.|||.|++
T Consensus 175 ~l~~~~~~aGlP~g~v 190 (466)
T cd07138 175 ILAEILDEAGLPAGVF 190 (466)
T ss_pred HHHHHHHHcCCCCCcE
Confidence 4589999999999865
No 56
>PF03990 DUF348: Domain of unknown function (DUF348) ; InterPro: IPR007137 This domain normally occurs as tandem repeats; however it is found as a single copy in the Saccharomyces cerevisiae (Baker's yeast) DNA-binding nuclear protein YCR593 (P25357 from SWISSPROT).
Probab=25.14 E-value=76 Score=16.93 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=14.8
Q ss_pred CCCCCHHHHHhhCCCCCc
Q 048574 17 DSEPSAYDVLQEYDFPVG 34 (65)
Q Consensus 17 ~~~~t~yelL~~ygLP~G 34 (65)
....|+-|+|++.|...|
T Consensus 15 T~a~tV~~~L~~~gI~l~ 32 (43)
T PF03990_consen 15 TTASTVGDALKELGITLG 32 (43)
T ss_pred eCCCCHHHHHHhCCCCCC
Confidence 456799999999998864
No 57
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=24.84 E-value=1.7e+02 Score=19.97 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=28.2
Q ss_pred CCHHHHHhhCCCCC------cCCCCCcceeEeeCCCCcEEEEechh
Q 048574 20 PSAYDVLQEYDFPV------GILPKGVTRYALNAETGELIFGTYEQ 59 (65)
Q Consensus 20 ~t~yelL~~ygLP~------GLLP~gV~~Y~Ld~~tG~F~V~~y~~ 59 (65)
..+-++|+++|+|. |--+ +.=.|+.+||+..|+..+.
T Consensus 110 ~~a~~~L~~~gi~i~a~dvGG~~g---R~i~f~~~tG~v~vk~~~~ 152 (157)
T PRK13488 110 ESAKETLKKLGIRIVAEDVGGDYG---RTVKFDLKTGKVIVRKANG 152 (157)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCCC---cEEEEECCCCEEEEEEcCC
Confidence 46789999999996 4443 3446888899999987663
No 58
>PRK10090 aldehyde dehydrogenase A; Provisional
Probab=24.81 E-value=46 Score=25.30 Aligned_cols=16 Identities=19% Similarity=0.532 Sum_probs=13.7
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.+++++.|||.|++
T Consensus 116 ~l~~~~~~aglP~gv~ 131 (409)
T PRK10090 116 AFAKIVDEIGLPKGVF 131 (409)
T ss_pred HHHHHHHHcCCCcccE
Confidence 4689999999999876
No 59
>cd07088 ALDH_LactADH-AldA Escherichia coli lactaldehyde dehydrogenase AldA-like. Lactaldehyde dehydrogenase from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an NAD(+)-dependent enzyme involved in the metabolism of L-fucose and L-rhamnose, and other similar sequences are present in this CD.
Probab=24.80 E-value=47 Score=25.11 Aligned_cols=16 Identities=25% Similarity=0.580 Sum_probs=13.5
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.++|++.|||.|++
T Consensus 178 ~l~~~~~~aglP~gvv 193 (468)
T cd07088 178 EFAELVDEAGLPAGVL 193 (468)
T ss_pred HHHHHHHHcCcCccce
Confidence 4689999999998875
No 60
>TIGR02299 HpaE 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase. This model represents the dehydrogenase responsible for the conversion of 5-carboxymethyl-2-hydroxymuconate semialdehyde to 5-carboxymethyl-2-hydroxymuconate (a tricarboxylic acid). This is the step in the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate following the oxidative opening of the aromatic ring.
Probab=24.59 E-value=43 Score=25.63 Aligned_cols=16 Identities=19% Similarity=0.468 Sum_probs=13.3
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.++|++.|||.|++
T Consensus 180 ~l~~~~~~aGlP~gvv 195 (488)
T TIGR02299 180 RLAEIAKEAGLPDGVF 195 (488)
T ss_pred HHHHHHHHcCcChhhe
Confidence 3589999999998875
No 61
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=24.48 E-value=73 Score=17.17 Aligned_cols=20 Identities=15% Similarity=0.320 Sum_probs=17.4
Q ss_pred CcceeEeeCCCCcEEEEech
Q 048574 39 GVTRYALNAETGELIFGTYE 58 (65)
Q Consensus 39 gV~~Y~Ld~~tG~F~V~~y~ 58 (65)
.+..++|++.||..++..+.
T Consensus 16 ~~~~~~l~D~tg~i~~~~~~ 35 (75)
T PF01336_consen 16 KIVFFTLEDGTGSIQVVFFN 35 (75)
T ss_dssp TEEEEEEEETTEEEEEEEET
T ss_pred CEEEEEEEECCccEEEEEcc
Confidence 45688999999999999988
No 62
>cd07105 ALDH_SaliADH Salicylaldehyde dehydrogenase, DoxF-like. Salicylaldehyde dehydrogenase (DoxF, SaliADH, EC=1.2.1.65) involved in the upper naphthalene catabolic pathway of Pseudomonas strain C18 and other similar sequences are present in this CD.
Probab=24.46 E-value=49 Score=24.86 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=13.6
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.+++++.|||.|++
T Consensus 143 ~l~~~~~~aGlP~gv~ 158 (432)
T cd07105 143 LIGRVFHEAGLPKGVL 158 (432)
T ss_pred HHHHHHHHcCcCCCcE
Confidence 4689999999999876
No 63
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=24.41 E-value=80 Score=18.04 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=22.9
Q ss_pred CCCCHHHHHhhCCCCC---------cCCCCCcceeEeeCCCCcEEE
Q 048574 18 SEPSAYDVLQEYDFPV---------GILPKGVTRYALNAETGELIF 54 (65)
Q Consensus 18 ~~~t~yelL~~ygLP~---------GLLP~gV~~Y~Ld~~tG~F~V 54 (65)
+..|+.|+|++.|+|. +++|+.--+..|.+. -+.++
T Consensus 14 ~~~tl~~ll~~l~~~~~~vav~~N~~iv~r~~~~~~L~~g-D~ieI 58 (65)
T PRK05863 14 EQTTVAALLDSLGFPEKGIAVAVDWSVLPRSDWATKLRDG-ARLEV 58 (65)
T ss_pred CCCcHHHHHHHcCCCCCcEEEEECCcCcChhHhhhhcCCC-CEEEE
Confidence 4568999999999985 566753333336532 34444
No 64
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=24.12 E-value=70 Score=18.80 Aligned_cols=15 Identities=20% Similarity=0.133 Sum_probs=10.7
Q ss_pred eeCCCCcEEEEechh
Q 048574 45 LNAETGELIFGTYEQ 59 (65)
Q Consensus 45 Ld~~tG~F~V~~y~~ 59 (65)
..+++|.|+|.+-++
T Consensus 36 ~~~~~G~Fev~~~g~ 50 (72)
T TIGR02174 36 TPPTTGAFEVTVNGQ 50 (72)
T ss_pred ecCCCcEEEEEECCE
Confidence 345789999987443
No 65
>cd07114 ALDH_DhaS Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like. Uncharacterized aldehyde dehydrogenase from Candidatus pelagibacter (DhaS) and other related sequences are present in this CD.
Probab=23.97 E-value=49 Score=24.96 Aligned_cols=16 Identities=25% Similarity=0.530 Sum_probs=13.2
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.++|++.|||.|++
T Consensus 164 ~l~~~l~~aglP~~vv 179 (457)
T cd07114 164 ELAKLAEEAGFPPGVV 179 (457)
T ss_pred HHHHHHHHcCcCCCcE
Confidence 3689999999999854
No 66
>cd07115 ALDH_HMSADH_HapE Pseudomonas fluorescens 4-hydroxymuconic semialdehyde dehydrogenase-like. 4-hydroxymuconic semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of Pseudomonas fluorescens ACB involved in 4-hydroxyacetophenone degradation, and putative hydroxycaproate semialdehyde dehydrogenase (ChnE) of Brachymonas petroleovorans involved in cyclohexane metabolism, and other similar sequences, are present in this CD.
Probab=23.92 E-value=46 Score=25.10 Aligned_cols=17 Identities=29% Similarity=0.645 Sum_probs=13.9
Q ss_pred CHHHHHhhCCCCCcCCC
Q 048574 21 SAYDVLQEYDFPVGILP 37 (65)
Q Consensus 21 t~yelL~~ygLP~GLLP 37 (65)
-+.+++++.|||.|++-
T Consensus 162 ~l~~~~~~aGlP~~~~~ 178 (453)
T cd07115 162 RIAELMAEAGFPAGVLN 178 (453)
T ss_pred HHHHHHHhcCcCchheE
Confidence 36799999999988763
No 67
>cd07118 ALDH_SNDH Gluconobacter oxydans L-sorbosone dehydrogenase-like. Included in this CD is the L-sorbosone dehydrogenase (SNDH) from Gluconobacter oxydans UV10. In G. oxydans, D-sorbitol is converted to 2-keto-L-gulonate (a precursor of L-ascorbic acid) in sequential oxidation steps catalyzed by a FAD-dependent, L-sorbose dehydrogenase and an NAD(P)+-dependent, L-sorbosone dehydrogenase.
Probab=23.77 E-value=51 Score=25.04 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=13.3
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.+++++.|||.|++
T Consensus 164 ~l~~~~~~aG~P~g~~ 179 (454)
T cd07118 164 MLAELLIEAGLPAGVV 179 (454)
T ss_pred HHHHHHHhcCCCccce
Confidence 3678999999998865
No 68
>PRK09406 gabD1 succinic semialdehyde dehydrogenase; Reviewed
Probab=23.74 E-value=49 Score=25.35 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=13.6
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+-+++++.|||.|++
T Consensus 168 ~l~~l~~~aGlP~gvv 183 (457)
T PRK09406 168 YLADLFRRAGFPDGCF 183 (457)
T ss_pred HHHHHHHHhCCCcCcE
Confidence 3678999999999985
No 69
>TIGR03216 OH_muco_semi_DH 2-hydroxymuconic semialdehyde dehydrogenase. Members of this protein family are 2-hydroxymuconic semialdehyde dehydrogenase. Many aromatic compounds are catabolized by way of the catechol, via the meta-cleavage pathway, to pyruvate and acetyl-CoA. This enzyme performs the second of seven steps in that pathway for catechol degradation.
Probab=23.69 E-value=51 Score=25.24 Aligned_cols=16 Identities=19% Similarity=0.355 Sum_probs=13.5
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.+++++.|||.|.+
T Consensus 184 ~l~~l~~~aglP~g~~ 199 (481)
T TIGR03216 184 LLGEVMNAVGVPKGVY 199 (481)
T ss_pred HHHHHHHHcCCCcCce
Confidence 4689999999998876
No 70
>PF02760 HIN: HIN-200/IF120x domain; InterPro: IPR004021 This domain has no known function. It is found in one or two copies per protein, and is found associated with the PAAD/DAPIN domain IPR004020 from INTERPRO.; PDB: 3RN2_A 3RN5_C 2OQ0_A 3B6Y_A 3RLN_A 3RNU_A 3RLO_A.
Probab=23.33 E-value=69 Score=23.11 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=18.2
Q ss_pred ceeEeeCCCCcEEEEechhh
Q 048574 41 TRYALNAETGELIFGTYEQQ 60 (65)
Q Consensus 41 ~~Y~Ld~~tG~F~V~~y~~~ 60 (65)
+-|++.++||+-+|-.|+++
T Consensus 132 ~~YeI~DnTG~MeVvv~G~~ 151 (170)
T PF02760_consen 132 TIYEIQDNTGKMEVVVYGKW 151 (170)
T ss_dssp EEEEEEETTEEEEEEEEGGG
T ss_pred EEEEEecCCCcEEEEEeccC
Confidence 57999999999999999985
No 71
>cd07113 ALDH_PADH_NahF Escherichia coli NAD+-dependent phenylacetaldehyde dehydrogenase PadA-like. NAD+-dependent, homodimeric, phenylacetaldehyde dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia coli involved in the catabolism of 2-phenylethylamine, and other related sequences, are present in this CD. Also included is the Pseudomonas fluorescens ST StyD PADH involved in styrene catabolism, the Sphingomonas sp. LB126 FldD protein involved in fluorene degradation, and the Novosphingobium aromaticivorans NahF salicylaldehyde dehydrogenase involved in the NAD+-dependent conversion of salicylaldehyde to salicylate.
Probab=23.17 E-value=53 Score=25.14 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=13.1
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.+++++.|||.|++
T Consensus 187 ~l~~~~~~aglP~gvv 202 (477)
T cd07113 187 RVAELAKEAGIPDGVL 202 (477)
T ss_pred HHHHHHHHcCcCCCcE
Confidence 3588999999998865
No 72
>cd07103 ALDH_F5_SSADH_GabD Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.
Probab=23.10 E-value=51 Score=24.65 Aligned_cols=16 Identities=25% Similarity=0.576 Sum_probs=13.6
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.++|++.|||.|++
T Consensus 162 ~l~~~l~~aglP~g~v 177 (451)
T cd07103 162 ALAELAEEAGLPAGVL 177 (451)
T ss_pred HHHHHHHHcCCCcccE
Confidence 4689999999999965
No 73
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=23.00 E-value=1.5e+02 Score=20.44 Aligned_cols=39 Identities=18% Similarity=0.318 Sum_probs=29.1
Q ss_pred CCHHHHHhhCCCCC------cCCCCCcceeEeeCCCCcEEEEechhhh
Q 048574 20 PSAYDVLQEYDFPV------GILPKGVTRYALNAETGELIFGTYEQQL 61 (65)
Q Consensus 20 ~t~yelL~~ygLP~------GLLP~gV~~Y~Ld~~tG~F~V~~y~~~~ 61 (65)
..+-++|+++|+|. |--++.| .|+..||+..|+.-....
T Consensus 108 ~~a~~~L~~~gI~i~a~dvGG~~gR~i---~f~~~tG~v~vk~~~~~~ 152 (159)
T PRK13495 108 EAVKKHLKDFGIKLVAEDTGGNRARSI---EYNIETGKLLVRKVGGGE 152 (159)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCCcEE---EEECCCCEEEEEEcCCCc
Confidence 46789999999995 5444444 677888999998766544
No 74
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=22.87 E-value=1.4e+02 Score=20.47 Aligned_cols=38 Identities=16% Similarity=0.290 Sum_probs=29.6
Q ss_pred CCHHHHHhhCCCCC------cCCCCCcceeEeeCCCCcEEEEechhh
Q 048574 20 PSAYDVLQEYDFPV------GILPKGVTRYALNAETGELIFGTYEQQ 60 (65)
Q Consensus 20 ~t~yelL~~ygLP~------GLLP~gV~~Y~Ld~~tG~F~V~~y~~~ 60 (65)
..+-++|+++|+|. |-..+.+ .|+..||+..|....++
T Consensus 115 ~~a~~~L~~~gI~i~a~dvGG~~gR~i---~f~~~tG~v~vk~~~~~ 158 (162)
T PRK13490 115 KAVKKKLKELSIPILAEDIGGNKGRTM---IFDTSDGKVYIKTVGLG 158 (162)
T ss_pred HHHHHHHHHcCCcEEEEECCCCCCcEE---EEECCCCEEEEEEcCCC
Confidence 46789999999995 5555555 57778899999977644
No 75
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=22.79 E-value=20 Score=20.84 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=19.4
Q ss_pred cccCCCCCCHHHHHhhCCCCCcCCCC
Q 048574 13 FASADSEPSAYDVLQEYDFPVGILPK 38 (65)
Q Consensus 13 ~~s~~~~~t~yelL~~ygLP~GLLP~ 38 (65)
|.|+...--+.++|++.|++.-|.|.
T Consensus 8 F~st~~a~~~ek~lk~~gi~~~liP~ 33 (73)
T PF11823_consen 8 FPSTHDAMKAEKLLKKNGIPVRLIPT 33 (73)
T ss_pred ECCHHHHHHHHHHHHHCCCcEEEeCC
Confidence 34444455678999999999999883
No 76
>cd07150 ALDH_VaniDH_like Pseudomonas putida vanillin dehydrogenase-like. Vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid and other related sequences are included in this CD. The E. coli vanillin dehydrogenase (LigV) preferred NAD+ to NADP+ and exhibited a broad substrate preference, including vanillin, benzaldehyde, protocatechualdehyde, m-anisaldehyde, and p-hydroxybenzaldehyde.
Probab=22.75 E-value=53 Score=24.63 Aligned_cols=16 Identities=19% Similarity=0.594 Sum_probs=13.5
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.++|++.|||.|++
T Consensus 164 ~l~~~~~~ag~P~g~v 179 (451)
T cd07150 164 KIAEIMEEAGLPKGVF 179 (451)
T ss_pred HHHHHHHHhCCCcCcE
Confidence 3579999999999975
No 77
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1). Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases.
Probab=22.63 E-value=1e+02 Score=16.89 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=17.3
Q ss_pred cceeEeeCCCCcEEEEechhh
Q 048574 40 VTRYALNAETGELIFGTYEQQ 60 (65)
Q Consensus 40 V~~Y~Ld~~tG~F~V~~y~~~ 60 (65)
...++|++.+|.+++..++.+
T Consensus 20 ~~~~~l~D~tg~i~~~~f~~~ 40 (83)
T cd04492 20 YLALTLQDKTGEIEAKLWDAS 40 (83)
T ss_pred EEEEEEEcCCCeEEEEEcCCC
Confidence 357889999999999999843
No 78
>PRK09407 gabD2 succinic semialdehyde dehydrogenase; Reviewed
Probab=22.61 E-value=52 Score=25.75 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=13.5
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.++|++.|||.|++
T Consensus 199 ~l~~ll~eaGlP~gvv 214 (524)
T PRK09407 199 AAVELLYEAGLPRDLW 214 (524)
T ss_pred HHHHHHHHcCCCcccE
Confidence 3579999999999876
No 79
>cd07152 ALDH_BenzADH NAD-dependent benzaldehyde dehydrogenase II-like. NAD-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) is involved in the oxidation of benzyl alcohol to benzoate. In Acinetobacter calcoaceticus, this process is carried out by the chromosomally encoded, benzyl alcohol dehydrogenase (xylB) and benzaldehyde dehydrogenase II (xylC) enzymes; whereas in Pseudomonas putida they are encoded by TOL plasmids.
Probab=22.53 E-value=54 Score=24.65 Aligned_cols=15 Identities=27% Similarity=0.603 Sum_probs=12.7
Q ss_pred HHHHHhhCCCCCcCC
Q 048574 22 AYDVLQEYDFPVGIL 36 (65)
Q Consensus 22 ~yelL~~ygLP~GLL 36 (65)
+.++|++.|||.|++
T Consensus 157 l~~~~~~ag~P~gvv 171 (443)
T cd07152 157 IARLFEEAGLPAGVL 171 (443)
T ss_pred HHHHHHHhCcCcCcE
Confidence 358899999999985
No 80
>cd07109 ALDH_AAS00426 Uncharacterized Saccharopolyspora spinosa aldehyde dehydrogenase (AAS00426)-like. Uncharacterized aldehyde dehydrogenase of Saccharopolyspora spinosa (AAS00426) and other similar sequences, are present in this CD.
Probab=22.50 E-value=56 Score=24.66 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=13.6
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.+++++.|||.|++
T Consensus 162 ~l~~~~~~aGlP~gv~ 177 (454)
T cd07109 162 RLAELAEEAGLPAGAL 177 (454)
T ss_pred HHHHHHHHcCcCccce
Confidence 3678999999999976
No 81
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=22.38 E-value=99 Score=20.10 Aligned_cols=32 Identities=19% Similarity=0.411 Sum_probs=14.7
Q ss_pred CHHHHHhhCCCCCcCCCCCcceeEeeCCCCcEEEE
Q 048574 21 SAYDVLQEYDFPVGILPKGVTRYALNAETGELIFG 55 (65)
Q Consensus 21 t~yelL~~ygLP~GLLP~gV~~Y~Ld~~tG~F~V~ 55 (65)
-.++.|++.|+| .|+.+.....+...+.+-++
T Consensus 6 ~~~~~L~~~gi~---~P~~~~~~~~~~~~~~~viK 37 (161)
T PF02655_consen 6 KTYKFLKELGIP---VPTTLRDSEPEPIDGPWVIK 37 (161)
T ss_dssp HHHHHHTTT-S-----------EESS--SSSEEEE
T ss_pred HHHHHHHccCCC---CCCccccccccccCCcEEEE
Confidence 468999999998 67666666655555555544
No 82
>cd07112 ALDH_GABALDH-PuuC Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like. NADP+-dependent, gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (GABALDH) PuuC of Escherichia coli which catalyzes the conversion of putrescine to 4-aminobutanoate and other similar sequences are present in this CD.
Probab=22.33 E-value=56 Score=24.91 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=13.8
Q ss_pred CHHHHHhhCCCCCcCCC
Q 048574 21 SAYDVLQEYDFPVGILP 37 (65)
Q Consensus 21 t~yelL~~ygLP~GLLP 37 (65)
-+.++|++.|||.|++-
T Consensus 169 ~l~~~~~~aGlP~g~v~ 185 (462)
T cd07112 169 RLAELALEAGLPAGVLN 185 (462)
T ss_pred HHHHHHHhcCCCCCcEE
Confidence 46789999999998663
No 83
>cd07089 ALDH_CddD-AldA-like Rhodococcus ruber 6-oxolauric acid dehydrogenase-like and related proteins. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid; and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and also, the Mycobacterium tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence; and other similar sequences, are included in this CD.
Probab=22.33 E-value=56 Score=24.86 Aligned_cols=16 Identities=25% Similarity=0.598 Sum_probs=13.3
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.++|++.|||.|++
T Consensus 168 ~l~~~~~~aglP~g~~ 183 (459)
T cd07089 168 LLGEIIAETDLPAGVV 183 (459)
T ss_pred HHHHHHHHcCCCccce
Confidence 4689999999998865
No 84
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=22.03 E-value=1.2e+02 Score=16.20 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=17.4
Q ss_pred ceeEeeCCCCcEEEEechhhh
Q 048574 41 TRYALNAETGELIFGTYEQQL 61 (65)
Q Consensus 41 ~~Y~Ld~~tG~F~V~~y~~~~ 61 (65)
...++.+.+|.+++..++++.
T Consensus 21 ~~~~l~D~tg~~~~~~f~~~~ 41 (84)
T cd04485 21 AFVTLEDLTGSIEVVVFPETY 41 (84)
T ss_pred EEEEEEeCCCeEEEEECHHHH
Confidence 567888889999999998764
No 85
>cd02410 archeal_CPSF_KH The archaeal cleavage and polyadenylation specificity factor (CPSF) contains an N-terminal K homology RNA-binding domain (KH). The archeal CPSFs are predicted to be metal-dependent RNases belonging to the beta-CASP family, a subgroup enzymes within the metallo-beta-lactamase fold. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH domains are known to bind single-stranded RNA or DNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=21.97 E-value=1e+02 Score=21.46 Aligned_cols=32 Identities=31% Similarity=0.596 Sum_probs=23.4
Q ss_pred CCCHHHHHhhCCCCCcCCC--CCcceeEeeCCCCcEEEEe
Q 048574 19 EPSAYDVLQEYDFPVGILP--KGVTRYALNAETGELIFGT 56 (65)
Q Consensus 19 ~~t~yelL~~ygLP~GLLP--~gV~~Y~Ld~~tG~F~V~~ 56 (65)
...+-++.++ +.| .++++..||+++|+-.+..
T Consensus 51 ~e~A~~~I~~------ivP~ea~i~di~Fd~~tGEV~Iea 84 (145)
T cd02410 51 PEEAIKIILE------IVPEEAGITDIYFDDDTGEVIIEA 84 (145)
T ss_pred HHHHHHHHHH------hCCCccCceeeEecCCCcEEEEEE
Confidence 3455566655 566 5789999999999877664
No 86
>cd07143 ALDH_AldA_AN0554 Aspergillus nidulans aldehyde dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent aldehyde dehydrogenase (AldA) of Aspergillus nidulans (locus AN0554), and other similar sequences, are present in this CD.
Probab=21.90 E-value=57 Score=25.19 Aligned_cols=17 Identities=24% Similarity=0.516 Sum_probs=14.1
Q ss_pred CHHHHHhhCCCCCcCCC
Q 048574 21 SAYDVLQEYDFPVGILP 37 (65)
Q Consensus 21 t~yelL~~ygLP~GLLP 37 (65)
-+.++|++.|||.|++-
T Consensus 189 ~l~~~l~~aGlP~g~v~ 205 (481)
T cd07143 189 YMTKLIPEAGFPPGVIN 205 (481)
T ss_pred HHHHHHHhcCcCcccEE
Confidence 36889999999999763
No 87
>cd07111 ALDH_F16 Aldehyde dehydrogenase family 16A1-like. Uncharacterized aldehyde dehydrogenase family 16 member A1 (ALDH16A1) and other related sequences are present in this CD. The active site cysteine and glutamate residues are not conserved in the human ALDH16A1 protein sequence.
Probab=21.72 E-value=55 Score=25.37 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=13.5
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.++|++.|||.|++
T Consensus 192 ~l~~~~~~aGlP~gvv 207 (480)
T cd07111 192 LFAEICAEAGLPPGVL 207 (480)
T ss_pred HHHHHHHhcCCCcccE
Confidence 3688999999999965
No 88
>cd07139 ALDH_AldA-Rv0768 Mycobacterium tuberculosis aldehyde dehydrogenase AldA-like. The Mycobacterium tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB structure, 3B4W, and the Mycobacterium tuberculosis H37Rv aldehyde dehydrogenase AldA (locus Rv0768) sequence, as well as the Rhodococcus rhodochrous ALDH involved in haloalkane catabolism, and other similar sequences, are included in this CD.
Probab=21.29 E-value=62 Score=24.56 Aligned_cols=16 Identities=19% Similarity=0.389 Sum_probs=13.9
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.++|++.|||.|++
T Consensus 182 ~l~~~~~~aglP~gv~ 197 (471)
T cd07139 182 LLAEAAEEAGLPPGVV 197 (471)
T ss_pred HHHHHHHHcCCCCCcE
Confidence 4689999999999976
No 89
>COG3812 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.21 E-value=52 Score=24.05 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=14.2
Q ss_pred CCHHHHHhhCCCCCcC
Q 048574 20 PSAYDVLQEYDFPVGI 35 (65)
Q Consensus 20 ~t~yelL~~ygLP~GL 35 (65)
.++|++|+.+|.+.|=
T Consensus 171 TtAYaiLRHnGVelGK 186 (193)
T COG3812 171 TTAYAILRHNGVELGK 186 (193)
T ss_pred HHHHHHHHhcCccccc
Confidence 4899999999999884
No 90
>TIGR02904 spore_ysxE spore coat protein YsxE. Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.
Probab=21.00 E-value=1.4e+02 Score=21.11 Aligned_cols=36 Identities=11% Similarity=0.187 Sum_probs=25.4
Q ss_pred HHHhhCCCCCc-CCCCCcceeEeeCCCCcEEEEechh
Q 048574 24 DVLQEYDFPVG-ILPKGVTRYALNAETGELIFGTYEQ 59 (65)
Q Consensus 24 elL~~ygLP~G-LLP~gV~~Y~Ld~~tG~F~V~~y~~ 59 (65)
++|++||+.+= +-|---+.|.++.++|.|-+..+..
T Consensus 3 ~vl~~Y~l~v~~i~~~~~~v~~v~T~~G~~~Lk~~~~ 39 (309)
T TIGR02904 3 AVLEHYGLQPEEMEQVTGKLFKVYTDQGVFALKKLYA 39 (309)
T ss_pred hhHhhcCCCceeeecccCcEEEEEeCCCCEEEEEecc
Confidence 67889988532 3221114599999999999998763
No 91
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=20.92 E-value=80 Score=16.04 Aligned_cols=12 Identities=50% Similarity=0.908 Sum_probs=9.3
Q ss_pred eeEeeCCCCcEE
Q 048574 42 RYALNAETGELI 53 (65)
Q Consensus 42 ~Y~Ld~~tG~F~ 53 (65)
=|-||.+||+..
T Consensus 12 l~AlD~~TG~~~ 23 (38)
T PF01011_consen 12 LYALDAKTGKVL 23 (38)
T ss_dssp EEEEETTTTSEE
T ss_pred EEEEECCCCCEE
Confidence 478899999864
No 92
>PF02983 Pro_Al_protease: Alpha-lytic protease prodomain; InterPro: IPR004236 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. The alpha-lytic protease prodomain is associated with serine peptidases, specifically the alpha-lytic endopeptidases and streptogrisin A, B, C, D and E, which are bacterial enzymes and which belong to MEROPS peptidase subfamily S1A (IPR001316 from INTERPRO). The protease precursor in Gram-negative bacterial proteases may be a general property of extracellular bacterial proteases []. The proteases are encoded with a large (166 amino acid) N-terminal pro region that is required transiently both in vivo and in vitro for the correct folding of the protease domain [, ]. The pro region also acts as a potent inhibitor of the mature enzyme []. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis, 0005576 extracellular region; PDB: 3PRO_C 2PRO_B 4PRO_C.
Probab=20.72 E-value=1.2e+02 Score=17.58 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=19.6
Q ss_pred CCCCcceeEeeCCCCcEEEEech
Q 048574 36 LPKGVTRYALNAETGELIFGTYE 58 (65)
Q Consensus 36 LP~gV~~Y~Ld~~tG~F~V~~y~ 58 (65)
.|..++++-.|..|++..|....
T Consensus 21 ~~~~~~~WyvD~~tn~VVV~a~~ 43 (62)
T PF02983_consen 21 APVAVTSWYVDPRTNKVVVTADS 43 (62)
T ss_dssp GGGCEEEEEEECCCTEEEEEEEC
T ss_pred CCCCcceEEEeCCCCeEEEEECC
Confidence 36789999999999999997654
No 93
>PF11213 DUF3006: Protein of unknown function (DUF3006); InterPro: IPR021377 This family of proteins has no known function.
Probab=20.35 E-value=26 Score=20.74 Aligned_cols=29 Identities=31% Similarity=0.511 Sum_probs=19.1
Q ss_pred hhCCCCCcCCCCCcc-eeEeeC-CCCcEEEE
Q 048574 27 QEYDFPVGILPKGVT-RYALNA-ETGELIFG 55 (65)
Q Consensus 27 ~~ygLP~GLLP~gV~-~Y~Ld~-~tG~F~V~ 55 (65)
..+.+|+-.||.+++ +-.|.- ..|.|++.
T Consensus 21 ~~~~vp~~~LP~~~keGDvl~i~~~~~~~~d 51 (71)
T PF11213_consen 21 KEIDVPRSRLPEGAKEGDVLEIGEDGSIEID 51 (71)
T ss_pred EEEEEEHHHCCCCCCcccEEEECCCceEEEC
Confidence 357789999999887 333333 45677653
No 94
>cd07149 ALDH_y4uC Uncharacterized ALDH (y4uC) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (ORF name y4uC) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=20.18 E-value=67 Score=23.99 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=13.6
Q ss_pred HHHHHhhCCCCCcCCC
Q 048574 22 AYDVLQEYDFPVGILP 37 (65)
Q Consensus 22 ~yelL~~ygLP~GLLP 37 (65)
+.++|++.|||.|++-
T Consensus 169 l~~~l~~ag~P~gvv~ 184 (453)
T cd07149 169 LAELLLEAGLPKGALN 184 (453)
T ss_pred HHHHHHHcCcCccceE
Confidence 6899999999988764
No 95
>cd07083 ALDH_P5CDH ALDH subfamily NAD+-dependent delta(1)-pyrroline-5-carboxylate dehydrogenase-like. ALDH subfamily of the NAD+-dependent, delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH, EC=1.5.1.12). The proline catabolic enzymes, proline dehydrogenase and P5CDH catalyze the two-step oxidation of proline to glutamate. P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes. Monofunctional enzyme sequences such as those seen in the Bacillus RocA P5CDH are also present in this subfamily as well as the human ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Probab=20.14 E-value=68 Score=24.83 Aligned_cols=16 Identities=25% Similarity=0.835 Sum_probs=13.6
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.+++++.|||.|++
T Consensus 199 ~l~~~~~eaGlP~gvv 214 (500)
T cd07083 199 KVFEIFHEAGFPPGVV 214 (500)
T ss_pred HHHHHHHHcCCCCCce
Confidence 3688999999999886
No 96
>cd07148 ALDH_RL0313 Uncharacterized ALDH ( RL0313) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (locus RL0313) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=20.10 E-value=67 Score=24.45 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=13.4
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+-+++++.|||.|++
T Consensus 169 ~l~~~~~~aGlP~gvv 184 (455)
T cd07148 169 AFVDLLHEAGLPEGWC 184 (455)
T ss_pred HHHHHHHHcCCCcCcE
Confidence 4578899999999975
No 97
>cd07097 ALDH_KGSADH-YcbD Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like. Kinetic studies of the Bacillus subtilis ALDH-like ycbD protein, which is involved in d-glucarate/d-galactarate utilization, reveal that it is a NADP+-dependent, alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH). KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. Interestingly, the NADP+-dependent, tetrameric, 2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an enzyme involved in the catabolic pathway for D-arabinose in Sulfolobus solfataricus, also clusters in this group. This CD shows a distant phylogenetic relationship to the Azospirillum brasilense KGSADH-II (-III) group.
Probab=20.10 E-value=67 Score=24.51 Aligned_cols=16 Identities=25% Similarity=0.692 Sum_probs=13.0
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.+++++.|||.|++
T Consensus 180 ~l~~~~~~aGlP~gvv 195 (473)
T cd07097 180 ALVEILEEAGLPAGVF 195 (473)
T ss_pred HHHHHHHHcCCCCcce
Confidence 4578999999998854
No 98
>cd07100 ALDH_SSADH1_GabD1 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like. Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.
Probab=20.08 E-value=67 Score=24.17 Aligned_cols=17 Identities=24% Similarity=0.614 Sum_probs=14.3
Q ss_pred CHHHHHhhCCCCCcCCC
Q 048574 21 SAYDVLQEYDFPVGILP 37 (65)
Q Consensus 21 t~yelL~~ygLP~GLLP 37 (65)
.+.++|++.|||.|++-
T Consensus 141 ~l~~~l~~aglP~gvv~ 157 (429)
T cd07100 141 AIEELFREAGFPEGVFQ 157 (429)
T ss_pred HHHHHHHHcCCCcCcEE
Confidence 47899999999999764
No 99
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=20.05 E-value=74 Score=19.59 Aligned_cols=19 Identities=16% Similarity=0.581 Sum_probs=16.5
Q ss_pred ceeEeeCCCCcEEEEechh
Q 048574 41 TRYALNAETGELIFGTYEQ 59 (65)
Q Consensus 41 ~~Y~Ld~~tG~F~V~~y~~ 59 (65)
-.|++|+++|++.|.....
T Consensus 57 l~F~vde~~~~~vVkViD~ 75 (107)
T PF03646_consen 57 LRFSVDEESGRVVVKVIDK 75 (107)
T ss_dssp EEEEEEEETTEEEEEEEET
T ss_pred eEEEEecCCCcEEEEEEEC
Confidence 5899999999999988754
Done!