Query 048574
Match_columns 65
No_of_seqs 102 out of 215
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 18:48:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048574.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048574hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ydu_A AT5G01610; DUF538, stru 99.5 6.6E-15 2.3E-19 102.3 4.3 42 16-57 48-89 (170)
2 3qth_A Uncharacterized protein 69.3 1.8 6.2E-05 29.5 1.3 14 21-34 145-158 (176)
3 2l32_A Small archaeal modifier 62.3 4.4 0.00015 23.4 1.9 19 16-34 17-35 (74)
4 1wxa_A Afadin, AF-6 protein; R 62.1 3.4 0.00012 25.9 1.5 25 19-47 37-61 (116)
5 2oqm_A Hypothetical protein; s 61.8 2.3 8E-05 29.4 0.8 14 21-34 164-177 (192)
6 3ec8_A Putative uncharacterize 39.7 19 0.00065 24.7 2.5 46 2-51 36-91 (166)
7 2oka_A Hypothetical protein; P 37.1 22 0.00074 22.3 2.3 32 22-60 26-58 (104)
8 2a4x_A Mitomycin-binding prote 35.8 36 0.0012 19.3 2.9 45 20-65 86-135 (138)
9 2p0g_A Selenoprotein W-related 33.2 23 0.0008 22.2 2.0 32 22-60 24-56 (105)
10 3kdf_D Replication protein A 3 33.0 32 0.0011 21.0 2.6 20 40-59 49-69 (132)
11 1p7l_A S-adenosylmethionine sy 30.8 21 0.0007 27.4 1.6 47 6-54 177-232 (383)
12 4gop_B Putative uncharacterize 30.5 37 0.0013 20.9 2.5 18 41-58 55-72 (136)
13 3so4_A Methionine-adenosyltran 29.4 18 0.00063 28.0 1.1 49 4-54 200-257 (415)
14 2fa8_A Hypothetical protein AT 27.0 24 0.00081 22.0 1.2 19 42-60 41-60 (105)
15 3nng_A Uncharacterized protein 26.9 8.2 0.00028 26.5 -1.1 28 38-65 133-165 (168)
16 2npb_A Selenoprotein W; struct 26.3 25 0.00085 21.5 1.2 31 23-60 24-56 (96)
17 3k9d_A LMO1179 protein, aldehy 25.9 30 0.001 25.3 1.7 15 22-36 158-172 (464)
18 4f5c_E S protein, PRCV spike p 25.6 15 0.0005 28.5 0.0 24 33-57 172-195 (440)
19 4a8j_B Elongator complex prote 25.6 38 0.0013 24.8 2.2 30 6-35 168-197 (270)
20 2p02_A S-adenosylmethionine sy 25.3 19 0.00065 27.7 0.6 48 5-54 197-253 (396)
21 1dcu_A Fructose-1,6-bisphospha 25.2 43 0.0015 24.7 2.5 18 38-55 204-221 (357)
22 2kl0_A Putative thiamin biosyn 25.1 59 0.002 18.4 2.6 16 18-33 13-28 (73)
23 3bua_E HSNM1B, DNA cross-LINK 25.1 16 0.00054 19.6 0.1 16 50-65 20-35 (36)
24 1y1l_A Arsenate reductase (ARS 24.6 30 0.001 20.9 1.3 31 17-47 39-69 (124)
25 3dex_A SAV_2001; alpha-beta pr 24.6 41 0.0014 21.3 2.0 32 22-60 33-65 (107)
26 4dng_A Uncharacterized aldehyd 23.7 34 0.0012 25.1 1.7 15 22-36 190-204 (485)
27 3iml_A S-adenosylmethionine sy 23.7 34 0.0011 26.4 1.7 48 5-54 184-240 (399)
28 3i44_A Aldehyde dehydrogenase; 22.7 37 0.0013 25.3 1.7 16 21-36 206-221 (497)
29 4e3x_A Delta-1-pyrroline-5-car 22.5 37 0.0013 25.9 1.7 16 21-36 244-259 (563)
30 3k2w_A Betaine-aldehyde dehydr 22.3 38 0.0013 25.1 1.7 16 21-36 193-208 (497)
31 3rlo_A Gamma-interferon-induci 22.0 48 0.0017 23.5 2.1 22 40-61 136-157 (204)
32 1t90_A MMSDH, probable methylm 22.0 39 0.0013 24.9 1.7 16 21-36 186-201 (486)
33 2d4e_A 5-carboxymethyl-2-hydro 21.8 39 0.0013 25.2 1.7 16 21-36 207-222 (515)
34 2o2p_A Formyltetrahydrofolate 21.7 39 0.0013 25.3 1.7 16 21-36 223-238 (517)
35 3b4w_A Aldehyde dehydrogenase; 21.7 40 0.0014 25.0 1.7 15 22-36 192-206 (495)
36 2f9z_C Protein (chemotaxis met 21.1 1.1E+02 0.0038 20.1 3.7 39 20-61 108-152 (159)
37 1jei_A Emerin; membrane protei 21.0 41 0.0014 19.0 1.3 17 20-36 9-25 (53)
38 3iz6_D 40S ribosomal protein S 20.9 87 0.003 22.6 3.3 28 28-56 79-113 (265)
39 3r64_A NAD dependent benzaldeh 20.8 41 0.0014 25.0 1.6 15 22-36 195-209 (508)
40 3s82_A S-adenosylmethionine sy 20.7 41 0.0014 26.0 1.6 27 25-54 231-257 (407)
41 1a4s_A ALDH, betaine aldehyde 20.7 43 0.0015 24.9 1.7 16 21-36 200-215 (503)
42 2w8n_A Succinate-semialdehyde 20.5 34 0.0012 25.3 1.1 16 21-36 191-206 (487)
43 3r31_A BADH, betaine aldehyde 20.4 44 0.0015 25.1 1.7 16 21-36 195-210 (517)
44 1bxs_A Aldehyde dehydrogenase; 20.4 34 0.0012 25.5 1.1 16 21-36 204-219 (501)
45 1o04_A Aldehyde dehydrogenase, 20.2 35 0.0012 25.5 1.1 16 21-36 203-218 (500)
46 3rh9_A Succinate-semialdehyde 20.2 40 0.0014 25.2 1.5 15 22-36 193-207 (506)
47 3ed6_A Betaine aldehyde dehydr 20.2 35 0.0012 25.6 1.1 15 22-36 216-230 (520)
48 4g5a_A Uncharacterized protein 20.2 68 0.0023 20.3 2.3 32 30-61 57-91 (99)
49 2imp_A Lactaldehyde dehydrogen 20.1 35 0.0012 25.0 1.1 16 21-36 187-202 (479)
No 1
>1ydu_A AT5G01610; DUF538, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG unknown function; NMR {Arabidopsis thaliana} SCOP: b.162.1.1
Probab=99.52 E-value=6.6e-15 Score=102.27 Aligned_cols=42 Identities=31% Similarity=0.566 Sum_probs=39.4
Q ss_pred CCCCCCHHHHHhhCCCCCcCCCCCcceeEeeCCCCcEEEEec
Q 048574 16 ADSEPSAYDVLQEYDFPVGILPKGVTRYALNAETGELIFGTY 57 (65)
Q Consensus 16 ~~~~~t~yelL~~ygLP~GLLP~gV~~Y~Ld~~tG~F~V~~y 57 (65)
+.+++++||+|++||||+||||++|++|.+|++||.|+|++-
T Consensus 48 g~~~~ta~elL~e~gLP~GLLP~~V~~Y~l~~~tG~f~V~l~ 89 (170)
T 1ydu_A 48 GKMQKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIP 89 (170)
T ss_dssp TTTTSSCHHHHHHHSCTTCTTTSSSCEEEECTTTCSEEEECS
T ss_pred ccccccHHHHHHHcCCCCCcCCCCCeEEEEECCCcEEEEEeC
Confidence 477889999999999999999999999999999999999873
No 2
>3qth_A Uncharacterized protein; DINB/YFIT-like putative metalloenzymes, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.20A {Colwellia psychrerythraea}
Probab=69.30 E-value=1.8 Score=29.51 Aligned_cols=14 Identities=14% Similarity=0.287 Sum_probs=13.4
Q ss_pred CHHHHHhhCCCCCc
Q 048574 21 SAYDVLQEYDFPVG 34 (65)
Q Consensus 21 t~yelL~~ygLP~G 34 (65)
|+|++||..|.|.|
T Consensus 145 TAYaILR~~GV~LG 158 (176)
T 3qth_A 145 MVYAIAKNNGVSVT 158 (176)
T ss_dssp HHHHHHHHTTCCCC
T ss_pred HHHHHHHhcCCCcC
Confidence 89999999999998
No 3
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=62.34 E-value=4.4 Score=23.44 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=15.6
Q ss_pred CCCCCCHHHHHhhCCCCCc
Q 048574 16 ADSEPSAYDVLQEYDFPVG 34 (65)
Q Consensus 16 ~~~~~t~yelL~~ygLP~G 34 (65)
-++..|+-|+|++.|+|.-
T Consensus 17 v~~g~Tv~dLL~~Lgl~~~ 35 (74)
T 2l32_A 17 VDDDGTYADLVRAVDLSPH 35 (74)
T ss_dssp CSTTCSHHHHHHTTCCCSS
T ss_pred cCCCCcHHHHHHHcCCCcc
Confidence 3556799999999999964
No 4
>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.15.1.5
Probab=62.11 E-value=3.4 Score=25.94 Aligned_cols=25 Identities=12% Similarity=0.321 Sum_probs=18.1
Q ss_pred CCCHHHHHhhCCCCCcCCCCCcceeEeeC
Q 048574 19 EPSAYDVLQEYDFPVGILPKGVTRYALNA 47 (65)
Q Consensus 19 ~~t~yelL~~ygLP~GLLP~gV~~Y~Ld~ 47 (65)
..-+-++|++||+.. ..+..|.|-+
T Consensus 37 ~~vV~eaLekygL~~----~~~~~Y~Lve 61 (116)
T 1wxa_A 37 DFAVAESLEKYGLEK----ENPKDYCIAR 61 (116)
T ss_dssp HHHHHHHHHHHTCSS----SCTTTEEEEE
T ss_pred HHHHHHHHHHhCCCC----CCchheEEEE
Confidence 345678899999984 5667777754
No 5
>2oqm_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.83A {Shewanella denitrificans} SCOP: a.213.1.3
Probab=61.82 E-value=2.3 Score=29.45 Aligned_cols=14 Identities=36% Similarity=0.693 Sum_probs=13.4
Q ss_pred CHHHHHhhCCCCCc
Q 048574 21 SAYDVLQEYDFPVG 34 (65)
Q Consensus 21 t~yelL~~ygLP~G 34 (65)
|+|.+||..|.|.|
T Consensus 164 TAYaILR~~GV~LG 177 (192)
T 2oqm_A 164 TAYGILRHNGVEVG 177 (192)
T ss_dssp HHHHHHHHHTCCCC
T ss_pred HHHHHHHhcCCCCC
Confidence 89999999999998
No 6
>3ec8_A Putative uncharacterized protein FLJ10324; beta barrel, helix, structural genomics, structural genomics consortium, SGC, cell adhesion; 2.60A {Homo sapiens}
Probab=39.70 E-value=19 Score=24.68 Aligned_cols=46 Identities=17% Similarity=0.325 Sum_probs=26.6
Q ss_pred cceeEeeeec--------ccccC--CCCCCHHHHHhhCCCCCcCCCCCcceeEeeCCCCc
Q 048574 2 GTIKINRITS--------PFASA--DSEPSAYDVLQEYDFPVGILPKGVTRYALNAETGE 51 (65)
Q Consensus 2 ~~~~~~~~~~--------~~~s~--~~~~t~yelL~~ygLP~GLLP~gV~~Y~Ld~~tG~ 51 (65)
|++||+.-.. .+++. .+..=|-|+|++|||.+ .....|-|-+..|+
T Consensus 36 G~LKIfG~~L~~G~~YKSvLas~rstA~elVkEALERYgL~k----e~~~~y~Lcdvig~ 91 (166)
T 3ec8_A 36 GVLKVFGDSVCTGTHYKSVLATGTSSARELVKEALERYALDP----RQAGQYVLCDVVGQ 91 (166)
T ss_dssp EEEEEECCC--CCSCCEEEEEETTCCHHHHHHHHHHHTTSCG----GGGGGEEEEEEEC-
T ss_pred cceEecccccCCCCCceeeeccccccHHHHHHHHHHHhccCc----CCcceeEEEEeecC
Confidence 6778776521 22222 22234678999999977 55566766544343
No 7
>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A
Probab=37.12 E-value=22 Score=22.28 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=19.4
Q ss_pred HHHHHhhCCCCCcCCCCCcceeEeeC-CCCcEEEEechhh
Q 048574 22 AYDVLQEYDFPVGILPKGVTRYALNA-ETGELIFGTYEQQ 60 (65)
Q Consensus 22 ~yelL~~ygLP~GLLP~gV~~Y~Ld~-~tG~F~V~~y~~~ 60 (65)
+.++|..++ ..+.+.++.+ ++|.|+|.+-++.
T Consensus 26 aqeLl~tF~-------~~l~~v~l~P~~~G~FEV~vng~l 58 (104)
T 2oka_A 26 AQELLSTFA-------DDLGKVCLEPGTGGVFRITCDGVQ 58 (104)
T ss_dssp HHHHHHHST-------TTCSEEEEEEECTTCEEEEETTEE
T ss_pred HHHHHHHcC-------cccceEEEEeCCCceEEEEECCEE
Confidence 356666653 2233455544 5799999886554
No 8
>2a4x_A Mitomycin-binding protein; ALFA/beta protein, mitomycin C-binding protein, bleomycin A2, antimicrobial protein; HET: BLM; 1.40A {Streptomyces caespitosus} SCOP: d.32.1.2 PDB: 2a4w_A* 1kmz_A 1kll_A*
Probab=35.79 E-value=36 Score=19.30 Aligned_cols=45 Identities=13% Similarity=0.100 Sum_probs=27.2
Q ss_pred CCHHHHHhhCCCCCcC----CCCCcc-eeEeeCCCCcEEEEechhhhhhcC
Q 048574 20 PSAYDVLQEYDFPVGI----LPKGVT-RYALNAETGELIFGTYEQQLQLHH 65 (65)
Q Consensus 20 ~t~yelL~~ygLP~GL----LP~gV~-~Y~Ld~~tG~F~V~~y~~~~~~~~ 65 (65)
..+++-|++.|.+.-- .|.+.. .|-.|++--.+++..+. |+..||
T Consensus 86 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~~~~-~~~~~~ 135 (138)
T 2a4x_A 86 DKKYAELVDAGYEGHLKPWNAVWGQRYAIVKDPDGNVVDLFAPL-PLEHHH 135 (138)
T ss_dssp HHHHHHHHHTTCCEEEEEEEETTTEEEEEEECTTCCEEEEEEEC-TTC---
T ss_pred HHHHHHHHHCCCceeeCCcccCCCcEEEEEECCCCCEEEEEeCC-cccccc
Confidence 4678889999987421 233443 45567763347777776 887775
No 9
>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae}
Probab=33.25 E-value=23 Score=22.15 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=19.2
Q ss_pred HHHHHhhCCCCCcCCCCCcceeEeeC-CCCcEEEEechhh
Q 048574 22 AYDVLQEYDFPVGILPKGVTRYALNA-ETGELIFGTYEQQ 60 (65)
Q Consensus 22 ~yelL~~ygLP~GLLP~gV~~Y~Ld~-~tG~F~V~~y~~~ 60 (65)
+.++|..++ ..+.+.++.+ ++|.|+|.+-++.
T Consensus 24 aqeLl~tF~-------~~l~~v~l~P~~~G~FEV~vng~l 56 (105)
T 2p0g_A 24 SQELLHTFS-------EEIEYVALHPDTGGRFEIFCNGVQ 56 (105)
T ss_dssp HHHHHHHTT-------TTEEEEEEEEESTTCEEEEETTEE
T ss_pred HHHHHHHcC-------cccceEEEEeCCCceEEEEECCEE
Confidence 346666653 2233455544 5799999886554
No 10
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=32.98 E-value=32 Score=21.00 Aligned_cols=20 Identities=10% Similarity=0.152 Sum_probs=16.2
Q ss_pred cceeEeeCCCC-cEEEEechh
Q 048574 40 VTRYALNAETG-ELIFGTYEQ 59 (65)
Q Consensus 40 V~~Y~Ld~~tG-~F~V~~y~~ 59 (65)
-..|.|++.|| ..++..+..
T Consensus 49 ~~~~~ldD~TG~~I~~~~W~~ 69 (132)
T 3kdf_D 49 NIVYKIDDMTAAPMDVRQWVD 69 (132)
T ss_dssp EEEEEEECSSSSCEEEEEEC-
T ss_pred eEEEEEECCCCCEEEEEEEcc
Confidence 34899999999 899988753
No 11
>1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM ANP PPK; 2.50A {Escherichia coli} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1fug_A 1mxb_A* 1mxc_A* 1mxa_A* 1rg9_A* 1xra_A 1xrb_A 1xrc_A
Probab=30.82 E-value=21 Score=27.43 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=29.6
Q ss_pred EeeeecccccCCCCCCH-HHHHh--------hCCCCCcCCCCCcceeEeeCCCCcEEE
Q 048574 6 INRITSPFASADSEPSA-YDVLQ--------EYDFPVGILPKGVTRYALNAETGELIF 54 (65)
Q Consensus 6 ~~~~~~~~~s~~~~~t~-yelL~--------~ygLP~GLLP~gV~~Y~Ld~~tG~F~V 54 (65)
-.|+-+...|.+..+.+ .|-|+ +--+|..+|-+. +.|-+|+ ||+|.+
T Consensus 177 P~rv~tvviS~QH~~~v~~~~l~~~i~e~vi~~v~p~~~ld~~-t~~~iNP-tGrFvi 232 (383)
T 1p7l_A 177 IVGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSA-TKFFINP-TGRFVI 232 (383)
T ss_dssp EEEEEEEEEEEEECTTSCHHHHHHHHHHHTTTTTSCGGGCCTT-CEEEEST-TSCCCS
T ss_pred eeEEEEEEEEeecCCCCCHHHHHHHHHHHHHHHhcCccccCCC-eEEEECC-CCCccc
Confidence 45666666665444432 23333 566888877554 7899998 499964
No 12
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=30.50 E-value=37 Score=20.85 Aligned_cols=18 Identities=17% Similarity=0.394 Sum_probs=15.6
Q ss_pred ceeEeeCCCCcEEEEech
Q 048574 41 TRYALNAETGELIFGTYE 58 (65)
Q Consensus 41 ~~Y~Ld~~tG~F~V~~y~ 58 (65)
..|.|++.||..++..+.
T Consensus 55 ~~~~ldD~TG~I~~~~W~ 72 (136)
T 4gop_B 55 VAYSVEDGTGQIEVRQWL 72 (136)
T ss_dssp EEEEEECSSCEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEec
Confidence 369999999999998875
No 13
>3so4_A Methionine-adenosyltransferase; structural genomics, medical structural genomics of pathogen protozoa, MSGPP; 3.18A {Entamoeba histolytica}
Probab=29.40 E-value=18 Score=28.01 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=31.0
Q ss_pred eeEeeeecccccCCCCC--C---HHHHHh----hCCCCCcCCCCCcceeEeeCCCCcEEE
Q 048574 4 IKINRITSPFASADSEP--S---AYDVLQ----EYDFPVGILPKGVTRYALNAETGELIF 54 (65)
Q Consensus 4 ~~~~~~~~~~~s~~~~~--t---~yelL~----~ygLP~GLLP~gV~~Y~Ld~~tG~F~V 54 (65)
.|-.|+-+...|.+-.+ + +.+.+. +-=+|.++|-+. +.|-+|+ ||+|.+
T Consensus 200 ~~P~rv~tvViStQH~~~v~~~~l~~~i~e~VI~~vip~~~ld~~-t~~~INP-tGrFVi 257 (415)
T 3so4_A 200 LKPIRVHTIVISTQHADNVSNEEIAKGLEEEVTQKVIPKELMDDK-MLRYYNP-SGRFVI 257 (415)
T ss_dssp EEEEEEEEEEEEEEECTTSCHHHHHHHHHHHTHHHHSCTTTCCSS-CEEEEST-TCCCCS
T ss_pred ceeeEEEEEEEEEecCCCCCHHHHHHHHHHHHHHHhcCcccCCCC-eEEEECC-CCCeEE
Confidence 46677777666654443 3 222121 245788887655 7899998 499965
No 14
>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PS protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23
Probab=27.00 E-value=24 Score=22.03 Aligned_cols=19 Identities=11% Similarity=-0.029 Sum_probs=12.4
Q ss_pred eeEeeC-CCCcEEEEechhh
Q 048574 42 RYALNA-ETGELIFGTYEQQ 60 (65)
Q Consensus 42 ~Y~Ld~-~tG~F~V~~y~~~ 60 (65)
..++.+ ++|.|+|.+-++.
T Consensus 41 ~V~l~P~~~G~FEV~vng~l 60 (105)
T 2fa8_A 41 EVSLIPSTGGLFEITVDGTI 60 (105)
T ss_dssp EEEEEEECTTCEEEEETTEE
T ss_pred eEEEEcCCCcEEEEEECCEE
Confidence 334433 5799999986654
No 15
>3nng_A Uncharacterized protein; F5_F8_TYPE_C domain, NESG, structural genomics, PSI-2, prote structure initiative; 2.18A {Bacteroides fragilis}
Probab=26.93 E-value=8.2 Score=26.53 Aligned_cols=28 Identities=36% Similarity=0.532 Sum_probs=18.4
Q ss_pred CCcceeEee-----CCCCcEEEEechhhhhhcC
Q 048574 38 KGVTRYALN-----AETGELIFGTYEQQLQLHH 65 (65)
Q Consensus 38 ~gV~~Y~Ld-----~~tG~F~V~~y~~~~~~~~ 65 (65)
.+|+.|.+| .=||-=|++||+.|+..||
T Consensus 133 ~nvkefrin~lsp~~ytgfaeinlyekqlehhh 165 (168)
T 3nng_A 133 PNVKEFRINCLTPDNYTGFAEINLYEKQLEHHH 165 (168)
T ss_dssp EEEEEEEEEEEESSSEEEESCEEEEEECC----
T ss_pred CChheeEEeeeccccccceeeeehHHHHhhhhc
Confidence 477888775 2357678999999999876
No 16
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=26.26 E-value=25 Score=21.46 Aligned_cols=31 Identities=13% Similarity=0.021 Sum_probs=17.8
Q ss_pred HHHHhhCCCCCcCCCCCcc-eeEeeC-CCCcEEEEechhh
Q 048574 23 YDVLQEYDFPVGILPKGVT-RYALNA-ETGELIFGTYEQQ 60 (65)
Q Consensus 23 yelL~~ygLP~GLLP~gV~-~Y~Ld~-~tG~F~V~~y~~~ 60 (65)
.++|.+| |..+. +.++.+ ++|.|+|.+-++.
T Consensus 24 qeLl~~F-------p~~l~V~~~l~p~~~G~FEV~vng~l 56 (96)
T 2npb_A 24 EKLEHEF-------PGCLDICGEGTPQVTGFFEVTVAGKL 56 (96)
T ss_dssp HHHHHHS-------BTTEEEEECCCSSCCSCCEEEETTEE
T ss_pred HHHHHhC-------CcceEEEEEEcCCCCcEEEEEECCEE
Confidence 4566665 33233 344433 5799999875543
No 17
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 2.00A {Listeria monocytogenes}
Probab=25.92 E-value=30 Score=25.34 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=12.4
Q ss_pred HHHHHhhCCCCCcCC
Q 048574 22 AYDVLQEYDFPVGIL 36 (65)
Q Consensus 22 ~yelL~~ygLP~GLL 36 (65)
+.+++.+.|||.|++
T Consensus 158 l~~~~~~aG~P~gvv 172 (464)
T 3k9d_A 158 ISEAAEKAGCPKGAI 172 (464)
T ss_dssp HHHHHHHTTCCTTSE
T ss_pred HHHHHHHhCCCCCeE
Confidence 357789999999986
No 18
>4f5c_E S protein, PRCV spike protein; virus entry, cellular receptor, aminopeptidase N, glycosylat virus membrane, metalloprotease; HET: NAG; 3.20A {Porcine respiratory coronavirus}
Probab=25.65 E-value=15 Score=28.49 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=0.0
Q ss_pred CcCCCCCcceeEeeCCCCcEEEEec
Q 048574 33 VGILPKGVTRYALNAETGELIFGTY 57 (65)
Q Consensus 33 ~GLLP~gV~~Y~Ld~~tG~F~V~~y 57 (65)
.|+||..|+.+.+-. +|+|=|+=|
T Consensus 172 lGiLPp~VrE~vi~r-~G~~yvNGy 195 (440)
T 4f5c_E 172 LGTLPPSVKEIAISK-WGHFYINGY 195 (440)
T ss_dssp -------------------------
T ss_pred EecCCCceeEEEEEe-cceEEEcCE
Confidence 799999999999997 599988766
No 19
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=25.57 E-value=38 Score=24.82 Aligned_cols=30 Identities=20% Similarity=0.381 Sum_probs=21.9
Q ss_pred EeeeecccccCCCCCCHHHHHhhCCCCCcC
Q 048574 6 INRITSPFASADSEPSAYDVLQEYDFPVGI 35 (65)
Q Consensus 6 ~~~~~~~~~s~~~~~t~yelL~~ygLP~GL 35 (65)
|+.+.+......+...+.+.|.++.+|+||
T Consensus 168 Il~v~~~~~~~~deE~l~~~l~k~~~P~gl 197 (270)
T 4a8j_B 168 IVDIDVVLTGTLDTEEVSELLNEFRIPRGL 197 (270)
T ss_dssp EEEEEECCCSSCCHHHHHHHHHTTCCCSSC
T ss_pred eEEEecCCCCCccHHHHHHHhhheeccccc
Confidence 455555444445566789999999999998
No 20
>2p02_A S-adenosylmethionine synthetase isoform type-2; structural genomics, structural genomics consortium, SGC, transferase; HET: SAM; 1.21A {Homo sapiens} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1qm4_A 1o92_A* 1o93_A* 1o90_A* 1o9t_A 2obv_A*
Probab=25.34 E-value=19 Score=27.75 Aligned_cols=48 Identities=21% Similarity=0.313 Sum_probs=30.0
Q ss_pred eEeeeecccccCCCCCC-----HHHHHh----hCCCCCcCCCCCcceeEeeCCCCcEEE
Q 048574 5 KINRITSPFASADSEPS-----AYDVLQ----EYDFPVGILPKGVTRYALNAETGELIF 54 (65)
Q Consensus 5 ~~~~~~~~~~s~~~~~t-----~yelL~----~ygLP~GLLP~gV~~Y~Ld~~tG~F~V 54 (65)
|-.|+-+...|.+..+. +.+.+. +-=+|..+|-+. +.|-+|+ ||+|.+
T Consensus 197 ~P~rv~tvviS~QH~~~v~~~~lr~~i~e~vi~~v~p~~~ld~~-t~~~INP-tGrFvi 253 (396)
T 2p02_A 197 LPIRVHTIVISVQHDEEVCLDEMRDALKEKVIKAVVPAKYLDED-TIYHLQP-SGRFVI 253 (396)
T ss_dssp EEEEEEEEEEEEEECSSCCHHHHHHHHHHTTHHHHSCGGGCCTT-CEEEEST-TSCCCS
T ss_pred CceEEeEEEEeecCCCCCCHHHHHHHHHHHHHHHhcChhhcCCC-eEEEECC-CCCccc
Confidence 45677776666544443 222222 345788888654 7899998 499964
No 21
>1dcu_A Fructose-1,6-bisphosphatase; chloroplast, photosynthesis, redox regulation, thioredoxin, allostery, hydrolase; 2.20A {Pisum sativum} SCOP: e.7.1.1 PDB: 1d9q_A 1dbz_A 1spi_A
Probab=25.22 E-value=43 Score=24.73 Aligned_cols=18 Identities=33% Similarity=0.606 Sum_probs=15.6
Q ss_pred CCcceeEeeCCCCcEEEE
Q 048574 38 KGVTRYALNAETGELIFG 55 (65)
Q Consensus 38 ~gV~~Y~Ld~~tG~F~V~ 55 (65)
+||..|+||++.|+|.+.
T Consensus 204 ~Gv~~Ftld~~~Gef~lt 221 (357)
T 1dcu_A 204 KGVFVFTLDPLYGEFVLT 221 (357)
T ss_dssp SCEEEEEEETTTTEEEEE
T ss_pred CCEEEEEEcCCCCeEEEe
Confidence 789999999999999653
No 22
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=25.12 E-value=59 Score=18.36 Aligned_cols=16 Identities=19% Similarity=0.198 Sum_probs=13.6
Q ss_pred CCCCHHHHHhhCCCCC
Q 048574 18 SEPSAYDVLQEYDFPV 33 (65)
Q Consensus 18 ~~~t~yelL~~ygLP~ 33 (65)
+..|+.|+|++.|+|.
T Consensus 13 ~~~Tl~~LL~~l~~~~ 28 (73)
T 2kl0_A 13 QSASVAALMTELDCTG 28 (73)
T ss_dssp CCSBHHHHHHHTTCCS
T ss_pred CCCcHHHHHHHcCCCC
Confidence 3479999999999984
No 23
>3bua_E HSNM1B, DNA cross-LINK repair 1B protein; TRF2 TRFH domain dimerization domain apollo peptide, alternative splicing, cell cycle; HET: DNA; 2.50A {Homo sapiens}
Probab=25.05 E-value=16 Score=19.63 Aligned_cols=16 Identities=19% Similarity=0.258 Sum_probs=12.5
Q ss_pred CcEEEEechhhhhhcC
Q 048574 50 GELIFGTYEQQLQLHH 65 (65)
Q Consensus 50 G~F~V~~y~~~~~~~~ 65 (65)
-.|++.-+.|||.|||
T Consensus 20 a~~Ssr~FD~QVEK~~ 35 (36)
T 3bua_E 20 AGYSSRRFDQQVEKYH 35 (36)
T ss_pred cccchhhHHHHHHHhc
Confidence 3577777889999887
No 24
>1y1l_A Arsenate reductase (ARSC); detoxification, cadmium, oxidized form, structural genomics, PSI, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.44.1.1
Probab=24.61 E-value=30 Score=20.94 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=25.5
Q ss_pred CCCCCHHHHHhhCCCCCcCCCCCcceeEeeC
Q 048574 17 DSEPSAYDVLQEYDFPVGILPKGVTRYALNA 47 (65)
Q Consensus 17 ~~~~t~yelL~~ygLP~GLLP~gV~~Y~Ld~ 47 (65)
...+.+-++|+++|++.|.-|+.++.+.++.
T Consensus 39 ~~~~~a~~~l~e~Gids~~~sr~l~~~~~~~ 69 (124)
T 1y1l_A 39 RVDETVKRLLAERGLKAKEKPRTVDEVNLDD 69 (124)
T ss_dssp SCCHHHHHHHHTTTCCCCSSCCBGGGSCGGG
T ss_pred CCCHHHHHHHHHcCcCCCCccccCChhHhcC
Confidence 4556788999999999888899999877653
No 25
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0
Probab=24.60 E-value=41 Score=21.26 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=19.7
Q ss_pred HHHHHhhCCCCCcCCCCCcceeEeeC-CCCcEEEEechhh
Q 048574 22 AYDVLQEYDFPVGILPKGVTRYALNA-ETGELIFGTYEQQ 60 (65)
Q Consensus 22 ~yelL~~ygLP~GLLP~gV~~Y~Ld~-~tG~F~V~~y~~~ 60 (65)
+.|+|..++ +.....+|.+ ++|.|+|.+-++.
T Consensus 33 aqeLl~tF~-------~~l~eVsL~Pg~gG~FeV~vdg~l 65 (107)
T 3dex_A 33 AQELLTTFE-------TELTELALKPGTGGVFVVRVDDEV 65 (107)
T ss_dssp HHHHHHHST-------TTEEEEEEEEESSSCEEEEETTEE
T ss_pred HHHHHHhcc-------cccceEEEEeCCCceEEEEECCEE
Confidence 457777763 3333445544 5789999876543
No 26
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics, protein structure initiative, nysgrc, P biology; 2.50A {Bacillus subtilis}
Probab=23.71 E-value=34 Score=25.07 Aligned_cols=15 Identities=20% Similarity=0.512 Sum_probs=13.1
Q ss_pred HHHHHhhCCCCCcCC
Q 048574 22 AYDVLQEYDFPVGIL 36 (65)
Q Consensus 22 ~yelL~~ygLP~GLL 36 (65)
+.++|++.|||.|.+
T Consensus 190 l~~~l~~aGlP~gvv 204 (485)
T 4dng_A 190 IAKAFEHAGLPAGVL 204 (485)
T ss_dssp HHHHHHHTTCCTTSE
T ss_pred HHHHHHHhCcCCCeE
Confidence 678999999999876
No 27
>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP-BI cobalt, magnesium, metal-binding, nucleotide-binding, one-C metabolism; 2.35A {Burkholderia pseudomallei}
Probab=23.70 E-value=34 Score=26.41 Aligned_cols=48 Identities=17% Similarity=0.382 Sum_probs=29.1
Q ss_pred eEeeeecccccCCCCC--C---HHHHHh----hCCCCCcCCCCCcceeEeeCCCCcEEE
Q 048574 5 KINRITSPFASADSEP--S---AYDVLQ----EYDFPVGILPKGVTRYALNAETGELIF 54 (65)
Q Consensus 5 ~~~~~~~~~~s~~~~~--t---~yelL~----~ygLP~GLLP~gV~~Y~Ld~~tG~F~V 54 (65)
|-.|+-+...|.+..+ + +.+.+. +-=+|..+|-+. +.|-+|+ ||+|.+
T Consensus 184 ~P~rv~tvViStQH~~~v~~~~l~~~i~e~vi~~vip~~~l~~~-t~~~INP-tGrFVi 240 (399)
T 3iml_A 184 KPHSIDTVVLSTQHAPEIDLPALREAVIEEVIKPTLPADLIKGD-IKFLVNP-TGRFVI 240 (399)
T ss_dssp EEEEEEEEEEEEEECTTSCHHHHHHHHHHHTTTTTSCGGGCCTT-CEEEEST-TCCCCS
T ss_pred ceeeEEEEEEEeecCCCCCHHHHHHHHHHHHHHHhcCcccCCCC-cEEEECC-CCCeEe
Confidence 3456666656654433 2 222222 256788877654 7899998 499975
No 28
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Bartonella henselae}
Probab=22.72 E-value=37 Score=25.31 Aligned_cols=16 Identities=25% Similarity=0.532 Sum_probs=13.3
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.+++++.|||.|.+
T Consensus 206 ~l~~l~~eaGlP~gvv 221 (497)
T 3i44_A 206 LFAEILDEAALPSGVF 221 (497)
T ss_dssp HHHHHHHHTTCCTTSE
T ss_pred HHHHHHHHhCcCCCeE
Confidence 3578999999999876
No 29
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino acid metabolism, proline inhibition, oxidoreductase; HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A* 3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Probab=22.47 E-value=37 Score=25.94 Aligned_cols=16 Identities=31% Similarity=0.704 Sum_probs=13.4
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.++|++.|||.|.+
T Consensus 244 ~l~~ll~eAGlP~Gvv 259 (563)
T 4e3x_A 244 AVYRILREAGLPPNII 259 (563)
T ss_dssp HHHHHHHHTTCCTTSE
T ss_pred HHHHHHHHhCCCCCeE
Confidence 3578999999999875
No 30
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Probab=22.25 E-value=38 Score=25.10 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=13.3
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+-++|++.|||.|.+
T Consensus 193 ~l~~ll~~aGlP~gvv 208 (497)
T 3k2w_A 193 ELGRIAKEAGLPDGVL 208 (497)
T ss_dssp HHHHHHHHTTCCTTSE
T ss_pred HHHHHHHHhCcCcCeE
Confidence 3578899999999876
No 31
>3rlo_A Gamma-interferon-inducible protein 16; HIN200/OB fold/DNA binding, DNA binding/cytosolic DNA sensor cytosol, DNA binding protein; 1.80A {Homo sapiens} PDB: 3rnu_A* 3b6y_A 3rln_A
Probab=22.01 E-value=48 Score=23.46 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=19.0
Q ss_pred cceeEeeCCCCcEEEEechhhh
Q 048574 40 VTRYALNAETGELIFGTYEQQL 61 (65)
Q Consensus 40 V~~Y~Ld~~tG~F~V~~y~~~~ 61 (65)
-+-|++.++||+-+|-.|+++-
T Consensus 136 ~~~YeI~DnTG~MeVvv~G~~~ 157 (204)
T 3rlo_A 136 FTYYEIQDNTGKMEVVVHGRLT 157 (204)
T ss_dssp EEEEEEEETTEEEEEEECGGGG
T ss_pred eEEEEEecCCCcEEEEEeccCc
Confidence 4579999999999999999853
No 32
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Probab=21.98 E-value=39 Score=24.91 Aligned_cols=16 Identities=13% Similarity=0.515 Sum_probs=13.1
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.+++++.|||.|.+
T Consensus 186 ~l~~l~~~aGlP~gvv 201 (486)
T 1t90_A 186 KLVELFEKAGLPKGVF 201 (486)
T ss_dssp HHHHHHHHTTCCTTSE
T ss_pred HHHHHHHHhCCCCCEE
Confidence 3578999999998864
No 33
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC; HET: NAD; 2.10A {Thermus thermophilus}
Probab=21.80 E-value=39 Score=25.21 Aligned_cols=16 Identities=31% Similarity=0.700 Sum_probs=13.2
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.+++++.|||.|.+
T Consensus 207 ~l~~l~~eaGlP~gvv 222 (515)
T 2d4e_A 207 KLAEILKEADLPPGVF 222 (515)
T ss_dssp HHHHHHHHTTCCTTSE
T ss_pred HHHHHHHHhCCCcCeE
Confidence 3578999999998875
No 34
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A* 2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A* 3rhl_A*
Probab=21.70 E-value=39 Score=25.33 Aligned_cols=16 Identities=13% Similarity=0.308 Sum_probs=13.2
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.+++++.|||.|.+
T Consensus 223 ~l~~l~~eaGlP~gvv 238 (517)
T 2o2p_A 223 KFAELTLKAGIPKGVV 238 (517)
T ss_dssp HHHHHHHHTTCCTTSE
T ss_pred HHHHHHHHhCCCcCeE
Confidence 3589999999998865
No 35
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics, PSI-2, protein STR initiative; HET: NAD GOL; 1.80A {Mycobacterium tuberculosis}
Probab=21.69 E-value=40 Score=25.05 Aligned_cols=15 Identities=33% Similarity=0.634 Sum_probs=12.9
Q ss_pred HHHHHhhCCCCCcCC
Q 048574 22 AYDVLQEYDFPVGIL 36 (65)
Q Consensus 22 ~yelL~~ygLP~GLL 36 (65)
+.+++++.|||.|.+
T Consensus 192 l~~l~~eaGlP~gvv 206 (495)
T 3b4w_A 192 LAEVFAEVGLPEGVL 206 (495)
T ss_dssp HHHHHHHTTCCTTSE
T ss_pred HHHHHHHhCCCcCeE
Confidence 579999999999865
No 36
>2f9z_C Protein (chemotaxis methylation protein); bacterial chemotaxis, signal transduction, receptor deamidas aspartyl phosphatase, protein complex; 2.40A {Thermotoga maritima} SCOP: d.194.1.3
Probab=21.14 E-value=1.1e+02 Score=20.07 Aligned_cols=39 Identities=21% Similarity=0.320 Sum_probs=27.6
Q ss_pred CCHHHHHhhCCCCC------cCCCCCcceeEeeCCCCcEEEEechhhh
Q 048574 20 PSAYDVLQEYDFPV------GILPKGVTRYALNAETGELIFGTYEQQL 61 (65)
Q Consensus 20 ~t~yelL~~ygLP~------GLLP~gV~~Y~Ld~~tG~F~V~~y~~~~ 61 (65)
..+-+.|+++|+|. |--++.| .|+..||+..|.......
T Consensus 108 ~~a~~~L~~~gI~i~aeD~GG~~gR~i---~f~~~tG~v~vk~~~~~~ 152 (159)
T 2f9z_C 108 EAVKKHLKDFGIKLLAEDTGGNRARSV---EYNIETGKLLVRKVGGGE 152 (159)
T ss_dssp HHHHHHHHHTTCCEEEEEECCSSCEEE---EEETTTTEEEEECC----
T ss_pred HHHHHHHHHCCCcEEEEeCCCCCCcEE---EEECCCCEEEEEEcCCCc
Confidence 46789999999994 6655554 567889999998776554
No 37
>1jei_A Emerin; membrane protein; NMR {Synthetic} SCOP: a.140.1.1 PDB: 2odc_I 2odg_C
Probab=21.01 E-value=41 Score=18.99 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=13.7
Q ss_pred CCHHHHHhhCCCCCcCC
Q 048574 20 PSAYDVLQEYDFPVGIL 36 (65)
Q Consensus 20 ~t~yelL~~ygLP~GLL 36 (65)
..+.+.|.+||++.|=+
T Consensus 9 ~eLr~~L~~~G~~~GPI 25 (53)
T 1jei_A 9 TELTTLLRRYNIPHGPV 25 (53)
T ss_dssp HHHHHHHSSSCCSCCCC
T ss_pred HHHHHHHHHhCCCCCCC
Confidence 45778999999999843
No 38
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=20.94 E-value=87 Score=22.64 Aligned_cols=28 Identities=25% Similarity=0.638 Sum_probs=22.2
Q ss_pred hCCCCCcCC-----CCCcceeEe--eCCCCcEEEEe
Q 048574 28 EYDFPVGIL-----PKGVTRYAL--NAETGELIFGT 56 (65)
Q Consensus 28 ~ygLP~GLL-----P~gV~~Y~L--d~~tG~F~V~~ 56 (65)
++.+|+|++ |+.=.+|.+ |. .|+|.++-
T Consensus 79 D~~~PvG~MDVIsI~kt~e~fRll~D~-kGrf~l~~ 113 (265)
T 3iz6_D 79 DKTYPAGFMDVISIPKTGENYRLLYDT-KGRFRLQS 113 (265)
T ss_dssp CTTCCCCTTCEEECCSSCCEEEEEECT-TSCEEEEE
T ss_pred cCCCCCcEEEEEEEcCCCCEEEEEECC-CCcEEEEE
Confidence 578999995 777788887 54 49999874
No 39
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Probab=20.82 E-value=41 Score=25.01 Aligned_cols=15 Identities=20% Similarity=0.587 Sum_probs=12.8
Q ss_pred HHHHHhhCCCCCcCC
Q 048574 22 AYDVLQEYDFPVGIL 36 (65)
Q Consensus 22 ~yelL~~ygLP~GLL 36 (65)
+.++|++.|||.|.+
T Consensus 195 l~~ll~~aGlP~gvv 209 (508)
T 3r64_A 195 PARIFEEAGVPAGVI 209 (508)
T ss_dssp HHHHHHTTTCCTTTE
T ss_pred HHHHHHHhCcCcCeE
Confidence 478999999999875
No 40
>3s82_A S-adenosylmethionine synthase; seattle structural genomics center for infectious disease, S adenosylmethionine synthetase, transferase; 1.73A {Mycobacterium avium} PDB: 3tde_A 3rv2_A
Probab=20.70 E-value=41 Score=25.97 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=18.4
Q ss_pred HHhhCCCCCcCCCCCcceeEeeCCCCcEEE
Q 048574 25 VLQEYDFPVGILPKGVTRYALNAETGELIF 54 (65)
Q Consensus 25 lL~~ygLP~GLLP~gV~~Y~Ld~~tG~F~V 54 (65)
++.+++++ +++.+. +.|-+|+ ||+|.+
T Consensus 231 vip~~~~~-~~~~~~-t~~~INP-tGrFVi 257 (407)
T 3s82_A 231 VLNDLAHD-TLDTSS-TRLLVNP-TGKFVV 257 (407)
T ss_dssp HHHHHCCS-SCBCTT-CEEEEST-TCCCCS
T ss_pred hcCccccc-ccCCcC-eEEEECC-CCCeEE
Confidence 44444444 677654 7899998 499975
No 41
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A*
Probab=20.70 E-value=43 Score=24.93 Aligned_cols=16 Identities=25% Similarity=0.576 Sum_probs=13.2
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.+++++.|||.|.+
T Consensus 200 ~l~~l~~~aGlP~gvv 215 (503)
T 1a4s_A 200 ILAEIFHEAGVPVGLV 215 (503)
T ss_dssp HHHHHHHHTTCCTTSE
T ss_pred HHHHHHHHhCCCcCeE
Confidence 3578999999998865
No 42
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion, oxidoreductase, transit peptide, disease mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A 2w8q_A 2w8r_A*
Probab=20.46 E-value=34 Score=25.30 Aligned_cols=16 Identities=13% Similarity=0.378 Sum_probs=13.3
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.+++++.|||.|.+
T Consensus 191 ~l~~l~~~aGlP~gvv 206 (487)
T 2w8n_A 191 ALAELASQAGIPSGVY 206 (487)
T ss_dssp HHHHHHHHHTCCTTSE
T ss_pred HHHHHHHHhCCCCCeE
Confidence 3578999999999864
No 43
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Probab=20.39 E-value=44 Score=25.09 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=13.6
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.+++++.|||.|.+
T Consensus 195 ~l~~ll~eaGlP~gvv 210 (517)
T 3r31_A 195 KIAEILIEAGLPKGLF 210 (517)
T ss_dssp HHHHHHHHTTCCTTSE
T ss_pred HHHHHHHHhCcCcccE
Confidence 3578999999999986
No 44
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic, oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP: c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Probab=20.37 E-value=34 Score=25.50 Aligned_cols=16 Identities=25% Similarity=0.573 Sum_probs=13.1
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.+++++.|||.|.+
T Consensus 204 ~l~~l~~~aGlP~gv~ 219 (501)
T 1bxs_A 204 HMGSLIKEAGFPPGVV 219 (501)
T ss_dssp HHHHHHHHHTCCTTSE
T ss_pred HHHHHHHHhCCCcceE
Confidence 3578999999998865
No 45
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH, isomerization, oxidoreductase; HET: NAD; 1.42A {Homo sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A* 1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A* 3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A* 3n81_A 3n82_A* 3n83_A* ...
Probab=20.23 E-value=35 Score=25.47 Aligned_cols=16 Identities=25% Similarity=0.627 Sum_probs=13.3
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.+++++.|||.|.+
T Consensus 203 ~l~~l~~~aGlP~gvv 218 (500)
T 1o04_A 203 YVANLIKEAGFPPGVV 218 (500)
T ss_dssp HHHHHHHHHTCCTTSE
T ss_pred HHHHHHHHhCCCcCeE
Confidence 3578999999999875
No 46
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.63A {Marinobacter aquaeolei}
Probab=20.22 E-value=40 Score=25.21 Aligned_cols=15 Identities=27% Similarity=0.753 Sum_probs=12.9
Q ss_pred HHHHHhhCCCCCcCC
Q 048574 22 AYDVLQEYDFPVGIL 36 (65)
Q Consensus 22 ~yelL~~ygLP~GLL 36 (65)
+.+++++.|||.|.+
T Consensus 193 l~~l~~eaGlP~gvv 207 (506)
T 3rh9_A 193 FFSVMDKLDLPDGMV 207 (506)
T ss_dssp HHHHHTTTTCCTTSE
T ss_pred HHHHHHHhCcChhhE
Confidence 578999999999975
No 47
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti deseases, NAD, oxidoreductase, PSI; 1.70A {Staphylococcus aureus} PDB: 3fg0_A*
Probab=20.20 E-value=35 Score=25.63 Aligned_cols=15 Identities=27% Similarity=0.855 Sum_probs=13.0
Q ss_pred HHHHHhhCCCCCcCC
Q 048574 22 AYDVLQEYDFPVGIL 36 (65)
Q Consensus 22 ~yelL~~ygLP~GLL 36 (65)
+.+++++.|||.|.+
T Consensus 216 l~~l~~eaGlP~gvv 230 (520)
T 3ed6_A 216 VFELMEEVGFPKGTI 230 (520)
T ss_dssp HHHHHHHHCCCTTSE
T ss_pred HHHHHHHhCCCCCeE
Confidence 478999999999976
No 48
>4g5a_A Uncharacterized protein; immunoglobulin - like beta-sandwich, structural genomics, JO center for structural genomics, JCSG; 1.69A {Bacteroides thetaiotaomicron}
Probab=20.18 E-value=68 Score=20.25 Aligned_cols=32 Identities=22% Similarity=0.376 Sum_probs=25.2
Q ss_pred CCCCcCCCCCcceeEe---eCCCCcEEEEechhhh
Q 048574 30 DFPVGILPKGVTRYAL---NAETGELIFGTYEQQL 61 (65)
Q Consensus 30 gLP~GLLP~gV~~Y~L---d~~tG~F~V~~y~~~~ 61 (65)
=||.=+||-.+..|+| |.+-|++++..|++.+
T Consensus 57 v~~siifpv~ageytlyl~d~s~~~~elymy~a~~ 91 (99)
T 4g5a_A 57 VFQSIIFPVAAGEYTLYLGDLSLGQYELYMYNASV 91 (99)
T ss_dssp EEEEEECCCSSEEEEEECTTCCSSEEEEEEECSSC
T ss_pred eeeeEEEEeecceEEEEeCChhcCceEEEEEecce
Confidence 3566688988889988 5566999999998764
No 49
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A*
Probab=20.11 E-value=35 Score=25.05 Aligned_cols=16 Identities=19% Similarity=0.526 Sum_probs=13.1
Q ss_pred CHHHHHhhCCCCCcCC
Q 048574 21 SAYDVLQEYDFPVGIL 36 (65)
Q Consensus 21 t~yelL~~ygLP~GLL 36 (65)
-+.+++++.|||.|.+
T Consensus 187 ~l~~l~~~aGlP~gvv 202 (479)
T 2imp_A 187 AFAKIVDEIGLPRGVF 202 (479)
T ss_dssp HHHHHHHHHTCCTTSE
T ss_pred HHHHHHHHhCCCcCeE
Confidence 3578999999999864
Done!