BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048575
(172 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1
Length = 82
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 65 TSTVPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQ-TGVLRIPCEVAV 123
+ PKGYLAV VGE+LKRF+IP YL+ +F LL +AEEEFG+ G L IPC V
Sbjct: 14 AADAPKGYLAVYVGEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSEDV 73
Query: 124 FESI 127
F+ I
Sbjct: 74 FQCI 77
>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1
Length = 82
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 69 PKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQ-TGVLRIPCEVAVFESI 127
PKGYLAV VGE++KRF+IP Y++ +F LL +AEEEFG+ G L IPC VF+ I
Sbjct: 18 PKGYLAVYVGEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSEEVFQRI 77
>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1
Length = 90
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 68 VPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQ-TGVLRIPCEVAVFES 126
V KGYLAV VGE+++RF+IP YL+ +F LL +AEEEFG+ G L IPC VF+
Sbjct: 25 VEKGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPCSEDVFQH 84
Query: 127 I 127
I
Sbjct: 85 I 85
>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var.
radiata GN=ARG7 PE=2 SV=1
Length = 92
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 51/83 (61%), Gaps = 9/83 (10%)
Query: 49 LKRTLSLSDNPLHNASTSTV---PKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEE 105
+++TLS N ++S V PKGYLAV VGE +KRF+IP +L+ F LL +AEE
Sbjct: 8 IRKTLSA-----RNEASSKVLDAPKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEE 62
Query: 106 EFGFQQ-TGVLRIPCEVAVFESI 127
EFG+ G L IPC +F+ I
Sbjct: 63 EFGYDHPMGGLTIPCSEDLFQHI 85
>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1
Length = 92
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 68 VPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQ-TGVLRIPCEVAVFES 126
VPKGYL V VG++++RF+IP YL+ +F LL +AEEEFG+ G L IPC+ F +
Sbjct: 25 VPKGYLVVYVGDKMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPCKEDEFLT 84
Query: 127 I 127
+
Sbjct: 85 V 85
>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1
Length = 93
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 68 VPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQ-TGVLRIPCE 120
VPKGY AV VG++++RF IP YL+ +F LL +AEEEFG+ G L IPC+
Sbjct: 26 VPKGYAAVYVGDKMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPCK 79
>sp|P78363|ABCA4_HUMAN Retinal-specific ATP-binding cassette transporter OS=Homo sapiens
GN=ABCA4 PE=1 SV=3
Length = 2273
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 58 NPLHNASTSTVPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEE---EFGFQQTGV 114
N L + VP+ L C+G+EL F++P H+A+ L RE EE + G G+
Sbjct: 1206 NELMDVVLHHVPEAKLVECIGQELI-FLLPNKNFKHRAYASLFRELEETLADLGLSSFGI 1264
Query: 115 LRIPCEVAVFESILKMVE 132
P E E LK+ E
Sbjct: 1265 SDTPLE----EIFLKVTE 1278
>sp|O35600|ABCA4_MOUSE Retinal-specific ATP-binding cassette transporter OS=Mus musculus
GN=Abca4 PE=2 SV=1
Length = 2310
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 68 VPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEE---EFGFQQTGVLRIPCEVAVF 124
VP+ L C+G+EL F++P +A+ L RE EE + G G+ P E
Sbjct: 1216 VPEAKLVECIGQELI-FLLPNKNFKQRAYASLFRELEETLADLGLSSFGISDTPLE---- 1270
Query: 125 ESILKMVE 132
E LK+ E
Sbjct: 1271 EIFLKVTE 1278
>sp|Q9N261|LPXN_RABIT Leupaxin OS=Oryctolagus cuniculus GN=LPXN PE=2 SV=1
Length = 386
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 49/136 (36%), Gaps = 27/136 (19%)
Query: 49 LKRTLSLSDNPLHNASTSTVPKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFG 108
L L + L N TVPKG+ A C + + I H H + +EE G
Sbjct: 128 LDSMLGGLEQELQNLGIPTVPKGHCASCQKPIVGKVIHALGQSWHPE-HFICTHCKEEIG 186
Query: 109 ----FQQTGVLRIP-------------CEVAVFESILKMVEQ--KKDTFFMQDC------ 143
F+++G+ P C + + +L + Q + FF C
Sbjct: 187 SSPFFERSGLAYCPKDYHHLFSPRCAYCAAPILDKVLTAMNQTWHPEHFFCSHCGEVFGT 246
Query: 144 -RFNIDDTKGYCSSEY 158
F+ D K YC ++
Sbjct: 247 EGFHEKDKKPYCRKDF 262
>sp|P19659|MED15_YEAST Mediator of RNA polymerase II transcription subunit 15
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=GAL11 PE=1 SV=3
Length = 1081
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 24/32 (75%), Gaps = 3/32 (9%)
Query: 11 EIVRLQQILRKWRKLAN---SPKTSTGGNNNN 39
+I+R Q ILR+ +++AN +P T++ GNNNN
Sbjct: 620 QILRRQAILRQQQQMANNNGNPGTTSTGNNNN 651
>sp|Q87VD5|GLNE_PSESM Glutamate-ammonia-ligase adenylyltransferase OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=glnE PE=3 SV=1
Length = 985
Score = 30.8 bits (68), Expect = 3.9, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 9 IREIVRLQQILRKWRKLANSPKTSTGGNNNNNSASKSIKFLK--RTLSLSDNPLHNASTS 66
+R + +L Q K + +A + K GG +++ + + R LSL PL N +
Sbjct: 316 LRTMKQLIQQEVKRKGMAENIKLGAGGIREVEFIAQAFQLIHGGRDLSLQQRPLFNVLKT 375
Query: 67 TVPKGYLAVCVGEELK 82
+GYL V EEL+
Sbjct: 376 LEGQGYLPSAVTEELR 391
>sp|Q0AFM7|RLMH_NITEC Ribosomal RNA large subunit methyltransferase H OS=Nitrosomonas
eutropha (strain C91) GN=rlmH PE=3 SV=1
Length = 155
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 5 KSNKIREIVRLQQILRKWRKLANSPKTSTGGNNNNNSASKSIKFLKRTLSLSDNPLHNAS 64
+S K VRL +++ WR+ GG + + K I K L S
Sbjct: 74 ESGKQATTVRLAELMTNWRESGRDVTFIIGGADGLHRDIKQIAHEKLAL----------S 123
Query: 65 TSTVPKGYLAVCVGEELKR-FIIPTDYLSHQA 95
T T+P G V + E+L R F I ++ H+A
Sbjct: 124 TMTLPHGLARVLLAEQLYRAFSITRNHPYHRA 155
>sp|Q85444|S3_DPIRV Uncharacterized protein S3 OS=Diadromus pulchellus idnoreovirus 1
GN=S2 PE=4 SV=1
Length = 1241
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 98 ILLREAEEEFGFQQTGVLRIPCEVAVFESILKMVEQKKDTFFMQDCRFN-IDDTKGYCSS 156
I ++E ++F + G++++ E + S+LK + K T + D +FN I+D +S
Sbjct: 631 ISIKETSQQFVYDDNGIIKVKYEKTLSGSVLK--DGSKITTVIPDQKFNSINDIDNILTS 688
Query: 157 EYQQTPSH 164
Q+ H
Sbjct: 689 RNQRNLRH 696
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,986,197
Number of Sequences: 539616
Number of extensions: 2378541
Number of successful extensions: 12785
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 12677
Number of HSP's gapped (non-prelim): 128
length of query: 172
length of database: 191,569,459
effective HSP length: 109
effective length of query: 63
effective length of database: 132,751,315
effective search space: 8363332845
effective search space used: 8363332845
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)