Query 048575
Match_columns 172
No_of_seqs 171 out of 656
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 18:49:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048575.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048575hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1und_A Advillin, P92; actin bi 51.9 4 0.00014 24.9 0.6 19 89-107 1-19 (37)
2 2al3_A TUG long isoform; TUG U 51.3 12 0.00043 26.9 3.2 41 69-111 7-47 (90)
3 1vd2_A Protein kinase C, IOTA 50.4 17 0.00059 25.9 3.8 56 76-136 12-79 (89)
4 3drz_A BTB/POZ domain-containi 45.9 18 0.00061 25.7 3.3 63 70-135 5-72 (107)
5 2vkp_A BTB/POZ domain-containi 44.2 26 0.00089 23.6 3.9 59 74-136 12-75 (109)
6 2vpk_A Myoneurin; transcriptio 34.4 33 0.0011 23.6 3.2 54 74-136 26-84 (116)
7 1w8x_N Protein P31, protein C, 34.2 12 0.0004 28.3 0.8 28 69-97 86-123 (126)
8 3ga1_A Nucleus accumbens-assoc 33.5 49 0.0017 23.2 4.1 54 73-135 36-93 (129)
9 1r29_A B-cell lymphoma 6 prote 28.6 34 0.0012 23.9 2.5 56 74-135 33-92 (127)
10 1yu8_X Villin; alpha helix, 3- 27.5 16 0.00053 25.0 0.4 20 89-108 31-50 (67)
11 1qzp_A Dematin; villin headpie 24.2 14 0.00046 25.3 -0.4 26 79-107 25-50 (68)
12 1zav_U 50S ribosomal protein L 23.9 46 0.0016 19.2 2.0 13 96-108 18-30 (30)
13 1y74_B MLIN-2/CASK, peripheral 23.6 29 0.001 21.5 1.2 20 89-108 26-49 (50)
14 2k6m_S Supervillin; SVHP, HP, 23.0 16 0.00056 24.9 -0.2 20 89-108 31-50 (67)
15 1ujs_A Actin-binding LIM prote 22.9 17 0.00057 26.2 -0.1 20 89-108 46-65 (88)
16 4ajy_C Transcription elongatio 22.4 85 0.0029 21.5 3.5 57 75-132 5-63 (97)
17 1sy9_B Cyclic-nucleotide-gated 21.9 61 0.0021 18.2 2.1 17 7-23 5-21 (26)
18 2if5_A Zinc finger and BTB dom 20.6 1E+02 0.0035 21.0 3.7 57 75-136 30-89 (120)
No 1
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=51.95 E-value=4 Score=24.94 Aligned_cols=19 Identities=32% Similarity=0.518 Sum_probs=17.2
Q ss_pred CCCChHHHHHHHHHHHHhc
Q 048575 89 DYLSHQAFHILLREAEEEF 107 (172)
Q Consensus 89 ~yLnhP~F~~LL~~aeEEf 107 (172)
.||+...|++++.|+.+||
T Consensus 1 ~yLsd~dF~~vFgmsr~eF 19 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQF 19 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCcCHHHH
Confidence 4999999999999999997
No 2
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=51.25 E-value=12 Score=26.90 Aligned_cols=41 Identities=12% Similarity=0.145 Sum_probs=29.1
Q ss_pred CCceEEEEecccceeEEEccCCCChHHHHHHHHHHHHhcCccc
Q 048575 69 PKGYLAVCVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQ 111 (172)
Q Consensus 69 pkG~~~VYVG~e~~RFvVp~~yLnhP~F~~LL~~aeEEfG~~~ 111 (172)
..|--++++..+.+|+.|++. -+. .+.++|++|=+.|||+.
T Consensus 7 ~~~m~v~Vl~~n~rr~~VKvt-p~t-~L~~VL~eaC~K~gl~~ 47 (90)
T 2al3_A 7 GGGSAVSVLAPNGRRHTVKVT-PST-VLLQVLEDTCRRQDFNP 47 (90)
T ss_dssp ---CCEEEECTTSCEEEECCC-TTS-BHHHHHHHHHHHTTCCG
T ss_pred CCccEEEEEcCCCcEEEEEEC-CCC-CHHHHHHHHHHHhCCCh
Confidence 344445555578999999995 333 56788899999999975
No 3
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=50.39 E-value=17 Score=25.86 Aligned_cols=56 Identities=13% Similarity=0.186 Sum_probs=38.9
Q ss_pred EecccceeEEEccCCCChHHHHHHHHHHHHhcCcccC------------CceEecCcHHHHHHHHHHHhccCC
Q 048575 76 CVGEELKRFIIPTDYLSHQAFHILLREAEEEFGFQQT------------GVLRIPCEVAVFESILKMVEQKKD 136 (172)
Q Consensus 76 YVG~e~~RFvVp~~yLnhP~F~~LL~~aeEEfG~~~~------------G~L~iPCd~~~Fe~vl~~l~~~~~ 136 (172)
|-+.|-.|+.||.+ .-|.+|.++..+-|++..+ .+++|.=|.++- ..+.+.+.+.+
T Consensus 12 ~~~gdi~~~~v~~~----i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~-eAl~l~~~n~~ 79 (89)
T 1vd2_A 12 YYRGDIMITHFEPS----ISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELE-EAFRLYELNKD 79 (89)
T ss_dssp ESSSCEEEEEECTT----CCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHH-HHHHHHHHTSC
T ss_pred EeCCeEEEEECCCC----CCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHH-HHHHHHHccCC
Confidence 33458889999884 4799999999999998643 345666555554 46666665543
No 4
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=45.86 E-value=18 Score=25.70 Aligned_cols=63 Identities=17% Similarity=0.273 Sum_probs=44.4
Q ss_pred CceEEEEecccceeEEEccCCCC-hH--HHHHHHHHHHHhcC--cccCCceEecCcHHHHHHHHHHHhccC
Q 048575 70 KGYLAVCVGEELKRFIIPTDYLS-HQ--AFHILLREAEEEFG--FQQTGVLRIPCEVAVFESILKMVEQKK 135 (172)
Q Consensus 70 kG~~~VYVG~e~~RFvVp~~yLn-hP--~F~~LL~~aeEEfG--~~~~G~L~iPCd~~~Fe~vl~~l~~~~ 135 (172)
...+.+.|| +.+|.+..+-|. +| .|..|+... .++. .+.+|.+-|-.|...|++||..++.+.
T Consensus 5 ~~~v~LNVG--G~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g~ 72 (107)
T 3drz_A 5 SKWVRLNVG--GTYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGK 72 (107)
T ss_dssp CCEEEEEET--TEEEEEEHHHHTSSTTSHHHHHHTTC-GGGGGGBCTTSCEEECSCHHHHHHHHHHHHHSC
T ss_pred CCEEEEEEC--CEEEEECHHHHhcCCCcchhHHHhcC-CCCCcCCCCCceEEecCChHHHHHHHHHhCCCe
Confidence 356778886 789999875553 33 566654321 1232 335789999999999999999999864
No 5
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=44.22 E-value=26 Score=23.62 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=40.8
Q ss_pred EEEecc--cceeEEEccCCC--ChHHHHHHHHHHHHhcCcccCCceEec-CcHHHHHHHHHHHhccCC
Q 048575 74 AVCVGE--ELKRFIIPTDYL--SHQAFHILLREAEEEFGFQQTGVLRIP-CEVAVFESILKMVEQKKD 136 (172)
Q Consensus 74 ~VYVG~--e~~RFvVp~~yL--nhP~F~~LL~~aeEEfG~~~~G~L~iP-Cd~~~Fe~vl~~l~~~~~ 136 (172)
.+.||. +.++|-+.-..| ..|.|+.++...-.|- . ..|.|| .+...|+.+|..+-.+.-
T Consensus 12 ~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~---~-~~i~l~~~~~~~f~~~l~~iYt~~~ 75 (109)
T 2vkp_A 12 HFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV---K-SEIHIPDVEPAAFLILLKYMYSDEI 75 (109)
T ss_dssp EEEESSTTSCEEEEECHHHHHHHCHHHHHHHC---------C-CEEEETTSCHHHHHHHHHHHHHCCC
T ss_pred EEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccC---C-CeEEeCCCCHHHHHHHHHHHcCCCc
Confidence 445542 358888888777 5899999997543331 1 678887 589999999999987653
No 6
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=34.41 E-value=33 Score=23.58 Aligned_cols=54 Identities=13% Similarity=0.229 Sum_probs=40.3
Q ss_pred EEEecccceeEEEccCCC--ChHHHHHHHHHHHHhcCcccCCceEec---CcHHHHHHHHHHHhccCC
Q 048575 74 AVCVGEELKRFIIPTDYL--SHQAFHILLREAEEEFGFQQTGVLRIP---CEVAVFESILKMVEQKKD 136 (172)
Q Consensus 74 ~VYVG~e~~RFvVp~~yL--nhP~F~~LL~~aeEEfG~~~~G~L~iP---Cd~~~Fe~vl~~l~~~~~ 136 (172)
.+.|| .++|-+.-..| ..|.|+.++... .++.|.|+ .+...|+.+|..+-.+.-
T Consensus 26 ~l~v~--~~~~~aHk~vLaa~S~yF~~~f~~~-------~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~ 84 (116)
T 2vpk_A 26 TIVIG--EFQFKAHRNVLASFSEYFGAIYRST-------SENNVFLDQSQVKADGFQKLLEFIYTGTL 84 (116)
T ss_dssp EEEET--TEEEEECHHHHHHHCHHHHHHHTTC-------CCSCEECCTTTCCHHHHHHHHHHHHHSCC
T ss_pred EEEEC--CEEEeccHHHHhhcCHHHHHHHcCC-------CCCeEEeecCCCCHHHHHHHHHHHcCCCc
Confidence 34453 56777777776 569999988654 35688888 699999999999987653
No 7
>1w8x_N Protein P31, protein C, GPC; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=34.23 E-value=12 Score=28.32 Aligned_cols=28 Identities=21% Similarity=0.514 Sum_probs=19.0
Q ss_pred CCceEEEEecccceeEE----------EccCCCChHHHH
Q 048575 69 PKGYLAVCVGEELKRFI----------IPTDYLSHQAFH 97 (172)
Q Consensus 69 pkG~~~VYVG~e~~RFv----------Vp~~yLnhP~F~ 97 (172)
..|||||.| ..+-.|+ ||+-|||.|+-+
T Consensus 86 ~QGYfPlL~-~~~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T 1w8x_N 86 KQGYFPLLV-PGRAKFVARHLGSGKKSVPLFFLNFTIAQ 123 (126)
T ss_dssp CCSSCCEEE-CCSSSSEEEEEEEESSCCCCSCCC-----
T ss_pred Ccccceeec-cchhhhhhhhhcCCCcceeeEEEeceeee
Confidence 479999999 6677776 688999988754
No 8
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=33.50 E-value=49 Score=23.21 Aligned_cols=54 Identities=20% Similarity=0.349 Sum_probs=40.9
Q ss_pred EEEEecccceeEEEccCCCC--hHHHHHHHHHHHHhcCcccCCceEec--CcHHHHHHHHHHHhccC
Q 048575 73 LAVCVGEELKRFIIPTDYLS--HQAFHILLREAEEEFGFQQTGVLRIP--CEVAVFESILKMVEQKK 135 (172)
Q Consensus 73 ~~VYVG~e~~RFvVp~~yLn--hP~F~~LL~~aeEEfG~~~~G~L~iP--Cd~~~Fe~vl~~l~~~~ 135 (172)
+.+.|| +++|-+.-..|. .|.|++++... ....|.|| .+...|+.+|..+-.+.
T Consensus 36 v~l~v~--~~~~~~Hk~vLaa~S~~F~~~f~~~-------~~~~i~l~~~~~~~~f~~ll~~iYtg~ 93 (129)
T 3ga1_A 36 VSVVVK--GHAFKAHRAVLAASSSYFRDLFNNS-------RSAVVELPAAVQPQSFQQILSFCYTGR 93 (129)
T ss_dssp EEEEET--TEEEEECHHHHHHHBHHHHHHHHHC-------CCSEEECCTTCCHHHHHHHHHHHHHSE
T ss_pred eEEEEC--CEEEEehHHHHHHcCHHHHHHHcCC-------CCCEEEECCCCCHHHHHHHHHHHhCCc
Confidence 345553 567777766664 69999998765 45789997 89999999999987654
No 9
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=28.60 E-value=34 Score=23.88 Aligned_cols=56 Identities=14% Similarity=0.287 Sum_probs=41.5
Q ss_pred EEEecccceeEEEccCCC--ChHHHHHHHHHHHHhcCcccCCceEe-c-CcHHHHHHHHHHHhccC
Q 048575 74 AVCVGEELKRFIIPTDYL--SHQAFHILLREAEEEFGFQQTGVLRI-P-CEVAVFESILKMVEQKK 135 (172)
Q Consensus 74 ~VYVG~e~~RFvVp~~yL--nhP~F~~LL~~aeEEfG~~~~G~L~i-P-Cd~~~Fe~vl~~l~~~~ 135 (172)
.+.|| .++|-+.-..| ..|.|+.++...-.| ....|.| + .+...|+.+|..+-.+.
T Consensus 33 ~l~v~--~~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~~~i~l~~~~~~~~f~~ll~~~Ytg~ 92 (127)
T 1r29_A 33 VIVVS--REQFRAHKTVLMACSGLFYSIFTDQLKR----NLSVINLDPEINPEGFNILLDFMYTSR 92 (127)
T ss_dssp EEEET--TEEEEECHHHHHHHCHHHHHHHTSTTTT----TCSEEECCTTSCHHHHHHHHHHHHHSC
T ss_pred EEEEC--CEEEehHHHHHHHhCHHHHHHhcCCccC----CCCEEEeCCCCCHHHHHHHHHHHcCCC
Confidence 34453 46777777777 679999999754434 3578999 4 58899999999998755
No 10
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=27.46 E-value=16 Score=25.02 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=18.5
Q ss_pred CCCChHHHHHHHHHHHHhcC
Q 048575 89 DYLSHQAFHILLREAEEEFG 108 (172)
Q Consensus 89 ~yLnhP~F~~LL~~aeEEfG 108 (172)
.||+.-.|++++.|+.+||-
T Consensus 31 ~yLsdedF~~vFgms~~eF~ 50 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAFA 50 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHHH
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 79999999999999999973
No 11
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=24.16 E-value=14 Score=25.27 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=21.2
Q ss_pred ccceeEEEccCCCChHHHHHHHHHHHHhc
Q 048575 79 EELKRFIIPTDYLSHQAFHILLREAEEEF 107 (172)
Q Consensus 79 ~e~~RFvVp~~yLnhP~F~~LL~~aeEEf 107 (172)
-|..|.+ .||+.-.|++++.|+.+||
T Consensus 25 VD~~~lE---~yLsdedF~~vFgmsr~eF 50 (68)
T 1qzp_A 25 VDRMRLE---RHLSAEDFSRVFAMSPEEF 50 (68)
T ss_dssp CCGGGCG---GGBCHHHHHHHSSSCHHHH
T ss_pred CCchHHH---hhCCHHHHHHHHCcCHHHH
Confidence 4544443 7999999999999999997
No 12
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=23.87 E-value=46 Score=19.19 Aligned_cols=13 Identities=31% Similarity=0.721 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhcC
Q 048575 96 FHILLREAEEEFG 108 (172)
Q Consensus 96 F~~LL~~aeEEfG 108 (172)
..+|.+..||+||
T Consensus 18 l~eLvk~lEe~fG 30 (30)
T 1zav_U 18 LAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 4678888899998
No 13
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=23.61 E-value=29 Score=21.52 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=14.8
Q ss_pred CCCChHHHHHHHH----HHHHhcC
Q 048575 89 DYLSHQAFHILLR----EAEEEFG 108 (172)
Q Consensus 89 ~yLnhP~F~~LL~----~aeEEfG 108 (172)
..|+.|-|+.||. -|.++||
T Consensus 26 ~lL~~PHfqaLl~ahD~Va~~~y~ 49 (50)
T 1y74_B 26 RILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhc
Confidence 4588899999995 4556664
No 14
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=23.05 E-value=16 Score=24.86 Aligned_cols=20 Identities=25% Similarity=0.551 Sum_probs=18.6
Q ss_pred CCCChHHHHHHHHHHHHhcC
Q 048575 89 DYLSHQAFHILLREAEEEFG 108 (172)
Q Consensus 89 ~yLnhP~F~~LL~~aeEEfG 108 (172)
.||+.-.|++++.|+.+||-
T Consensus 31 ~yLsdedF~~vFgmsr~eF~ 50 (67)
T 2k6m_S 31 IYLTDEDFEFALDMTRDEYN 50 (67)
T ss_dssp GGSCHHHHHHHTSSCHHHHT
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 79999999999999999974
No 15
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=22.94 E-value=17 Score=26.16 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=18.6
Q ss_pred CCCChHHHHHHHHHHHHhcC
Q 048575 89 DYLSHQAFHILLREAEEEFG 108 (172)
Q Consensus 89 ~yLnhP~F~~LL~~aeEEfG 108 (172)
.||+.-.|++++.|+.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T 1ujs_A 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 79999999999999999974
No 16
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=22.36 E-value=85 Score=21.47 Aligned_cols=57 Identities=12% Similarity=0.223 Sum_probs=38.3
Q ss_pred EEecccceeEEEccCC-CChHHHHHHHHHHHHhcCcccCCceEec-CcHHHHHHHHHHHh
Q 048575 75 VCVGEELKRFIIPTDY-LSHQAFHILLREAEEEFGFQQTGVLRIP-CEVAVFESILKMVE 132 (172)
Q Consensus 75 VYVG~e~~RFvVp~~y-LnhP~F~~LL~~aeEEfG~~~~G~L~iP-Cd~~~Fe~vl~~l~ 132 (172)
..+..|++.|.|.-.. ...+.|+.+|+... .+.-..+++|.|| -+...++.|+.-+.
T Consensus 5 ~L~SsDg~~F~v~r~vA~~S~~ik~m~~~~~-~~~E~~~~~I~l~~V~~~iL~kViey~~ 63 (97)
T 4ajy_C 5 KLISSDGHEFIVKREHALTSGTIKAMLSGPG-QFAENETNEVNFREIPSHVLSKVCMYFT 63 (97)
T ss_dssp EEECTTCCEEEEEHHHHTTSHHHHHHHCCC---------CEEECTTSCHHHHHHHHHHHH
T ss_pred EEEecCCcEEEecHHHHHHhHHHHHHHHhCC-CccccCCCceECCCCCHHHHHHHHHHHH
Confidence 3445789999998765 34788999886310 0111236789988 58899999999887
No 17
>1sy9_B Cyclic-nucleotide-gated olfactory channel; helix-turn-helix, calcium-binding protein; NMR {Xenopus laevis}
Probab=21.90 E-value=61 Score=18.16 Aligned_cols=17 Identities=41% Similarity=0.829 Sum_probs=14.7
Q ss_pred cchhHHHHHHHHHHHHH
Q 048575 7 NKIREIVRLQQILRKWR 23 (172)
Q Consensus 7 ~ki~~i~rL~qilKKWq 23 (172)
...+.|+||.-+++.|-
T Consensus 5 ggfrri~rlvgv~r~wa 21 (26)
T 1sy9_B 5 GGFRRIARLVGVLREWA 21 (26)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 45688999999999996
No 18
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=20.64 E-value=1e+02 Score=21.04 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=39.3
Q ss_pred EEecccceeEEEccCCC--ChHHHHHHHHHHHHhcCcccCCceEec-CcHHHHHHHHHHHhccCC
Q 048575 75 VCVGEELKRFIIPTDYL--SHQAFHILLREAEEEFGFQQTGVLRIP-CEVAVFESILKMVEQKKD 136 (172)
Q Consensus 75 VYVG~e~~RFvVp~~yL--nhP~F~~LL~~aeEEfG~~~~G~L~iP-Cd~~~Fe~vl~~l~~~~~ 136 (172)
+.|| .++|-+.-..| ..|.|+.++...-.| .....|.|+ .+...|+.+|..+-.+.-
T Consensus 30 l~v~--~~~~~aHk~vLaa~S~~F~~~f~~~~~e---~~~~~i~l~~~~~~~f~~ll~~~Yt~~~ 89 (120)
T 2if5_A 30 ILVE--GREFPTHRSVLAACSQYFKKLFTSGAVV---DQQNVYEIDFVSAEALTALMDFAYTATL 89 (120)
T ss_dssp EEET--TEEEEECHHHHHHHCHHHHHHHHC--------CCSEEECCSSCHHHHHHHHHHHHHSCC
T ss_pred EEEC--CEEEeHHHHHHHHhCHHHHHHhcCCccc---cCCceEEeCCCCHHHHHHHHHHHcCCCC
Confidence 4453 56787777776 479999998743222 235678888 489999999999987653
Done!