BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048576
         (142 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
 pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
          Length = 171

 Score =  176 bits (447), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 86/137 (62%), Positives = 104/137 (75%), Gaps = 4/137 (2%)

Query: 6   DHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPE 65
           D +L+    C RK AG+  S+ +IAEIDL+KF+PW LP+KALFG+ EWYFF P DRK P 
Sbjct: 27  DEELMVQYLC-RKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPN 85

Query: 66  ASEPNRVIRVGYWEDAGSGTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRL 125
            S PNRV   GYW+   +GTDKII+T G++ VGIK ALVF++G AP GTKTNWIMHEYRL
Sbjct: 86  GSRPNRVAGSGYWK--ATGTDKIISTEGQR-VGIKKALVFYIGKAPKGTKTNWIMHEYRL 142

Query: 126 FEPPPNNGSSKLDDWIL 142
            EP   NGS+KLDDW+L
Sbjct: 143 IEPSRRNGSTKLDDWVL 159


>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
          Length = 174

 Score =  176 bits (447), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 86/137 (62%), Positives = 104/137 (75%), Gaps = 4/137 (2%)

Query: 6   DHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPE 65
           D +L+    C RK AG+  S+ +IAEIDL+KF+PW LP+KALFG+ EWYFF P DRK P 
Sbjct: 30  DEELMVQYLC-RKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPN 88

Query: 66  ASEPNRVIRVGYWEDAGSGTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRL 125
            S PNRV   GYW+   +GTDKII+T G++ VGIK ALVF++G AP GTKTNWIMHEYRL
Sbjct: 89  GSRPNRVAGSGYWK--ATGTDKIISTEGQR-VGIKKALVFYIGKAPKGTKTNWIMHEYRL 145

Query: 126 FEPPPNNGSSKLDDWIL 142
            EP   NGS+KLDDW+L
Sbjct: 146 IEPSRRNGSTKLDDWVL 162


>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
           Stress-Responsive Nac1
          Length = 174

 Score =  139 bits (350), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 72/131 (54%), Positives = 86/131 (65%), Gaps = 8/131 (6%)

Query: 17  RKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPEASEPNRVIRVG 76
           RK AG RL + IIAE+DL+KF+PW+LP +ALFG  EWYFF P DRK P  S PNR    G
Sbjct: 35  RKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRAAGNG 94

Query: 77  YWEDAGSGTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRL-----FEPPPN 131
           YW+   +G DK +   GR  +GIK ALVF+ G AP G KT+WIMHEYRL           
Sbjct: 95  YWK--ATGADKPVAPRGR-TLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAK 151

Query: 132 NGSSKLDDWIL 142
            GS +LDDW+L
Sbjct: 152 KGSLRLDDWVL 162


>pdb|3K3W|B Chain B, Thermostable Penicillin G Acylase From Alcaligenes
           Faecalis In Orthorhombic Form
 pdb|3ML0|B Chain B, Thermostable Penicillin G Acylase From Alcaligenes
           Faecalis In Tetragonal Form
          Length = 551

 Score = 26.2 bits (56), Expect = 7.0,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)

Query: 33  DLFKF-EPWELPSKALFGDYEWYFFCP 58
           DLF   E WE   KA + D  W +F P
Sbjct: 273 DLFSVQEIWEFNQKASYSDVNWRYFRP 299


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.141    0.470 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,976,864
Number of Sequences: 62578
Number of extensions: 203982
Number of successful extensions: 297
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 288
Number of HSP's gapped (non-prelim): 4
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)