Query 048576
Match_columns 142
No_of_seqs 104 out of 828
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 18:51:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048576.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048576hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 4.2E-48 1.4E-52 289.6 7.1 135 4-142 23-162 (174)
2 1ut7_A No apical meristem prot 100.0 5.6E-48 1.9E-52 288.4 5.3 136 3-142 24-159 (171)
3 3alz_B CDW150; viral protein-r 25.9 19 0.00066 25.1 0.6 44 17-60 76-124 (149)
4 3pp4_P B-lymphocyte antigen CD 19.6 43 0.0015 16.5 1.0 12 33-44 1-12 (25)
5 1cmb_A Met APO-repressor; DNA- 19.2 7.9 0.00027 25.3 -2.3 38 4-46 51-88 (104)
6 3nr5_A MAF1, repressor of RNA 17.2 29 0.00097 25.0 0.0 12 29-40 119-130 (164)
7 4fr9_A Uncharacterized protein 9.0 3E+02 0.01 18.5 3.4 22 98-126 47-68 (144)
8 1ews_A RK-1 defensin, alpha-de 8.5 1.1E+02 0.0036 15.4 0.6 10 37-46 9-18 (32)
9 3alx_A Hemagglutinin, CDW150; 8.4 1.4E+02 0.0048 25.1 1.6 28 33-60 504-534 (559)
10 2g7j_A Putative cytoplasmic pr 6.7 1.6E+02 0.0056 19.7 1.0 38 8-45 48-85 (124)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=4.2e-48 Score=289.57 Aligned_cols=135 Identities=53% Similarity=1.018 Sum_probs=117.2
Q ss_pred ccCCceecCCCccceecCCCCCCCceeeccCCCCCCCCCCCcccCCCceEEEEeecCCCCCCCCCCeeeceecEEeeCCC
Q 048576 4 VFDHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPEASEPNRVIRVGYWEDAGS 83 (142)
Q Consensus 4 ~~D~eli~~~yl~rKi~g~plp~~~I~e~Dvy~~~PweL~~~~~~~~~~wyFFs~~~~~~~~g~r~~R~~~~G~Wk~~~~ 83 (142)
-||+|||.+ ||.+|+.|.++|.++|.++|||.+|||+||+.+..++++|||||++.+++++|.|++|++++|+||+ +
T Consensus 23 PTDeELV~~-YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR~t~~G~Wka--t 99 (174)
T 3ulx_A 23 PTDDELVEH-YLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKA--T 99 (174)
T ss_dssp CCHHHHHHH-THHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCEEETTEEEEE--C
T ss_pred CCHHHHHHH-HHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCceeecCCceEcc--C
Confidence 589999999 9999999999999999999999999999999887788999999999999999999999999999999 9
Q ss_pred CCceEEeCCCCeEEEEEEEEEeeecCCCCCCccCeEEEEEEeCCCCCCC-----CCCCCCCeeC
Q 048576 84 GTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRLFEPPPNN-----GSSKLDDWIL 142 (142)
Q Consensus 84 G~~~~I~~~~~~vvG~Kk~l~fy~~~~~~~~kt~W~M~EY~l~~~~~~~-----~~~~~~~wvl 142 (142)
|++++|... +.+||+|++|+||.+++|++.+|+|+||||+|.++.... ++++++||||
T Consensus 100 G~dk~I~~~-g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVl 162 (174)
T 3ulx_A 100 GADKPVAPR-GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVL 162 (174)
T ss_dssp SCCEEECCS-SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEE
T ss_pred CCCcEEeeC-CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEE
Confidence 999999865 578899999999999999999999999999999985432 3356799997
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=5.6e-48 Score=288.43 Aligned_cols=136 Identities=63% Similarity=1.123 Sum_probs=114.4
Q ss_pred cccCCceecCCCccceecCCCCCCCceeeccCCCCCCCCCCCcccCCCceEEEEeecCCCCCCCCCCeeeceecEEeeCC
Q 048576 3 DVFDHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKALFGDYEWYFFCPMDRKNPEASEPNRVIRVGYWEDAG 82 (142)
Q Consensus 3 ~~~D~eli~~~yl~rKi~g~plp~~~I~e~Dvy~~~PweL~~~~~~~~~~wyFFs~~~~~~~~g~r~~R~~~~G~Wk~~~ 82 (142)
.-||+|||.+ ||.+||.|.++|.++|+++|||.+|||+||+.+..++++||||+++.+++++|.|++|++++|+||+
T Consensus 24 ~PTDeELv~~-YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R~t~~G~Wk~-- 100 (171)
T 1ut7_A 24 YPTDEELMVQ-YLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKA-- 100 (171)
T ss_dssp CCCHHHHHHH-THHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCEEETTEEEEE--
T ss_pred CCChHHHHHH-HHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCcccccCCCCEEec--
Confidence 3589999999 9999999999999999999999999999999887789999999999999999999999999999999
Q ss_pred CCCceEEeCCCCeEEEEEEEEEeeecCCCCCCccCeEEEEEEeCCCCCCCCCCCCCCeeC
Q 048576 83 SGTDKIITTAGRKVVGIKNALVFHVGNAPNGTKTNWIMHEYRLFEPPPNNGSSKLDDWIL 142 (142)
Q Consensus 83 ~G~~~~I~~~~~~vvG~Kk~l~fy~~~~~~~~kt~W~M~EY~l~~~~~~~~~~~~~~wvl 142 (142)
+|++++|...+ .+||+|++|+||.++.|++.+|+|+||||+|......++....++|||
T Consensus 101 tG~~k~I~~~~-~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~Vl 159 (171)
T 1ut7_A 101 TGTDKIISTEG-QRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVL 159 (171)
T ss_dssp EEEEEEEEETT-EEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEE
T ss_pred cCCCceEEecC-cEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEE
Confidence 99999998654 789999999999999999999999999999999875555567799997
No 3
>3alz_B CDW150; viral protein-receptor complex, six-bladed beta-propeller FO immunoglobulin fold, beta-sandwich, viral protein-membrane complex; HET: NAG; 4.51A {Saguinus oedipus}
Probab=25.90 E-value=19 Score=25.11 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=23.6
Q ss_pred ceecCCCCCCC-ceeec-cCCCCCCCCCCCc---ccCCCceEEEEeecC
Q 048576 17 RKVAGHRLSIN-IIAEI-DLFKFEPWELPSK---ALFGDYEWYFFCPMD 60 (142)
Q Consensus 17 rKi~g~plp~~-~I~e~-Dvy~~~PweL~~~---~~~~~~~wyFFs~~~ 60 (142)
+||....+|.. ....+ |=|.++|.+|.=. ...++..|||.|-.+
T Consensus 76 KKIvSldl~eg~~p~~LEdgY~F~leNlSL~IlesrkedEGwYfmtlEe 124 (149)
T 3alz_B 76 NKIVSLDPSEAGPPRYLKDRYRFYLENLSLAIRESTKKDEGWYFMTLEK 124 (149)
T ss_dssp EEEEEECTTCCSCCEECCSSEEEETTTTEEEETTCCGGGCEEEEEEEEC
T ss_pred ceEEEeccccCCCccccccccEEeeccceeehhhcccccCceEEEEEec
Confidence 45554444432 22222 6677777777422 123477899987553
No 4
>3pp4_P B-lymphocyte antigen CD20; antibody FAB fragment IG-domain, cyclic peptide, antib antigen, immune system; 1.60A {Homo sapiens} PDB: 3bky_P 2osl_P
Probab=19.55 E-value=43 Score=16.48 Aligned_cols=12 Identities=17% Similarity=0.470 Sum_probs=7.7
Q ss_pred cCCCCCCCCCCC
Q 048576 33 DLFKFEPWELPS 44 (142)
Q Consensus 33 Dvy~~~PweL~~ 44 (142)
|||.|+|.+-.+
T Consensus 1 nIynCE~a~pse 12 (25)
T 3pp4_P 1 NIYNCEPANPSE 12 (26)
T ss_dssp -CCCCSCSSGGG
T ss_pred CccccccCCccc
Confidence 688999855443
No 5
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=19.16 E-value=7.9 Score=25.29 Aligned_cols=38 Identities=26% Similarity=0.409 Sum_probs=26.5
Q ss_pred ccCCceecCCCccceecCCCCCCCceeeccCCCCCCCCCCCcc
Q 048576 4 VFDHDLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSKA 46 (142)
Q Consensus 4 ~~D~eli~~~yl~rKi~g~plp~~~I~e~Dvy~~~PweL~~~~ 46 (142)
+|.-||+|-- ...-..|+|||. +.|+-...|.++|...
T Consensus 51 ATNSELLCEA-FLHA~TGQPLP~----D~Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 51 ATNSELLCEA-FLHAFTGQPLPD----DADLRKERSDEIPEAA 88 (104)
T ss_dssp CSHHHHHHHH-HHHHHHCCCCCC----GGGGBTTSCSCSCHHH
T ss_pred cccHHHHHHH-HHHHhcCCCCCC----chhhhhcCCccchHHH
Confidence 4555666652 223456999995 4688899999999763
No 6
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=17.17 E-value=29 Score=24.97 Aligned_cols=12 Identities=33% Similarity=0.800 Sum_probs=10.4
Q ss_pred eeeccCCCCCCC
Q 048576 29 IAEIDLFKFEPW 40 (142)
Q Consensus 29 I~e~Dvy~~~Pw 40 (142)
+.++|||.++|.
T Consensus 119 l~dC~IYsY~Pd 130 (164)
T 3nr5_A 119 LAECDIYSYNPD 130 (164)
T ss_dssp GGGCEEEEECCC
T ss_pred ccCCeEEEEcCC
Confidence 578899999998
No 7
>4fr9_A Uncharacterized protein; BLIP-like, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-biology; HET: MLY MSE; 1.20A {Bacteroides fragilis}
Probab=9.01 E-value=3e+02 Score=18.50 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=14.8
Q ss_pred EEEEEEEeeecCCCCCCccCeEEEEEEeC
Q 048576 98 GIKNALVFHVGNAPNGTKTNWIMHEYRLF 126 (142)
Q Consensus 98 G~Kk~l~fy~~~~~~~~kt~W~M~EY~l~ 126 (142)
|.++..-| .....|+|.|+.+.
T Consensus 47 g~e~~a~F-------d~~G~w~~te~ei~ 68 (144)
T 4fr9_A 47 GREXEVWF-------DANANWLMTETELN 68 (144)
T ss_dssp TEEEEEEE-------CTTSCEEEEEEEES
T ss_pred CEEEEEEE-------CCCCCEEEEEeccC
Confidence 45555556 23468999999884
No 8
>1ews_A RK-1 defensin, alpha-defisin; alpha defensin, triple-stranded beta-sheet, antimicrobial protein; NMR {Oryctolagus cuniculus} SCOP: g.9.1.1
Probab=8.54 E-value=1.1e+02 Score=15.45 Aligned_cols=10 Identities=30% Similarity=0.900 Sum_probs=7.6
Q ss_pred CCCCCCCCcc
Q 048576 37 FEPWELPSKA 46 (142)
Q Consensus 37 ~~PweL~~~~ 46 (142)
++||+..+..
T Consensus 9 cdpwevidgs 18 (32)
T 1ews_A 9 CDPWEVIDGS 18 (32)
T ss_dssp CCTTEEEEEC
T ss_pred cChhheeccc
Confidence 7899987653
No 9
>3alx_A Hemagglutinin, CDW150; viral protein-receptor complex, six-bladed beta-propeller FO immunoglobulin fold, beta-sandwich; HET: NAG; 3.15A {Measles virus} PDB: 3alw_A*
Probab=8.43 E-value=1.4e+02 Score=25.06 Aligned_cols=28 Identities=25% Similarity=0.397 Sum_probs=18.2
Q ss_pred cCCCCCCCCCCCc---ccCCCceEEEEeecC
Q 048576 33 DLFKFEPWELPSK---ALFGDYEWYFFCPMD 60 (142)
Q Consensus 33 Dvy~~~PweL~~~---~~~~~~~wyFFs~~~ 60 (142)
|=|.++|.+|.=. ...+++.|||.+-.+
T Consensus 504 d~Y~F~~enlSL~I~esrkedeGwY~~tlE~ 534 (559)
T 3alx_A 504 DRYRFYLEHLSLAIYESTKKDEGWYFMTLEK 534 (559)
T ss_dssp SSEECCTTTTCEEETTCCGGGCEEEEEEEEC
T ss_pred cccEEeeccceeehhhcccccCceEEEEEec
Confidence 6677777777532 223477899987653
No 10
>2g7j_A Putative cytoplasmic protein; STR72, autostructure, structural genomics, PSI, protein STRU initiative; NMR {Salmonella typhimurium} SCOP: d.198.5.1
Probab=6.68 E-value=1.6e+02 Score=19.72 Aligned_cols=38 Identities=18% Similarity=0.114 Sum_probs=29.3
Q ss_pred ceecCCCccceecCCCCCCCceeeccCCCCCCCCCCCc
Q 048576 8 DLICLPPCFRKVAGHRLSINIIAEIDLFKFEPWELPSK 45 (142)
Q Consensus 8 eli~~~yl~rKi~g~plp~~~I~e~Dvy~~~PweL~~~ 45 (142)
.||..|-|.-|-.+..-|...|..+|-|..-|.-|-+.
T Consensus 48 ALvIHP~LkerS~~fA~Pas~ikt~d~Y~~FPlyl~g~ 85 (124)
T 2g7j_A 48 ALIIHPRLKDRSSSLADPASDIKTCDHYQNFPLYLGGE 85 (124)
T ss_dssp CEECCSSCHHHHHHHSCBSSSCEEESSCCCSCCCCSSS
T ss_pred eEEecchHhhhhhcccCccccccccHHHHcCCcccccC
Confidence 57777766666666666788999999998888877665
Done!