BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048578
(519 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IRU|B Chain B, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|P Chain P, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 233
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 14/145 (9%)
Query: 348 EKGKEIFYNMRRDYKVEPNVKHYGCLVD--------LLCRARLLDEAYEVIRNMPMEPNA 399
+K K I Y+ R +KVEP KH G + L+ RAR L + Y ++ P+ P A
Sbjct: 49 KKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPI-PTA 107
Query: 400 VLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGN-YVLMSNIYAAKAQWDDAGKM 458
L + + V +++ + +N+G Y+ S+ A W
Sbjct: 108 QLVQRVASVMQEYTQSGGVRPFGVSL----LICGWNEGRPYLFQSDPSGAYFAWKATAMG 163
Query: 459 RRLMKERNIVKNPGCSVIEINDVVH 483
+ + + ++ +E+ D +H
Sbjct: 164 KNYVNGKTFLEKRYNEDLELEDAIH 188
>pdb|3UNB|A Chain A, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|O Chain O, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|CC Chain c, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|QQ Chain q, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|A Chain A, Mouse Constitutive 20s Proteasome
pdb|3UNE|O Chain O, Mouse Constitutive 20s Proteasome
pdb|3UNE|CC Chain c, Mouse Constitutive 20s Proteasome
pdb|3UNE|QQ Chain q, Mouse Constitutive 20s Proteasome
pdb|3UNF|A Chain A, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|O Chain O, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|A Chain A, Mouse 20s Immunoproteasome
pdb|3UNH|O Chain O, Mouse 20s Immunoproteasome
Length = 234
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 14/145 (9%)
Query: 348 EKGKEIFYNMRRDYKVEPNVKHYGCLVD--------LLCRARLLDEAYEVIRNMPMEPNA 399
+K K I Y+ R +KVEP KH G + L+ RAR L + Y ++ P+ P A
Sbjct: 50 KKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPI-PTA 108
Query: 400 VLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGN-YVLMSNIYAAKAQWDDAGKM 458
L + + V +++ + +N+G Y+ S+ A W
Sbjct: 109 QLVQRVASVMQEYTQSGGVRPFGVSL----LICGWNEGRPYLFQSDPSGAYFAWKATAMG 164
Query: 459 RRLMKERNIVKNPGCSVIEINDVVH 483
+ + + ++ +E+ D +H
Sbjct: 165 KNYVNGKTFLEKRYNEDLELEDAIH 189
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 20/137 (14%)
Query: 273 DMYAKCGYIEEALRVFKIVLEKNV-------------CTWNSIIGGLAIHGCGEEAVKMF 319
DM +K G + EALR++ V C+ + + +F
Sbjct: 34 DMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIF 93
Query: 320 WQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYK---VEPNVKHYGCLVDL 376
QM + + P++ T T + + + E+ ++M + K ++P ++ YG +
Sbjct: 94 KQMIVDKVVPNEATF----TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFG 149
Query: 377 LCRARLLDEAYEVIRNM 393
CR D+AYEV +M
Sbjct: 150 FCRKGDADKAYEVDAHM 166
>pdb|3KW0|A Chain A, Crystal Structure Of Cysteine Peptidase (Np_982244.1) From
Bacillus Cereus Atcc 10987 At 2.50 A Resolution
pdb|3KW0|B Chain B, Crystal Structure Of Cysteine Peptidase (Np_982244.1) From
Bacillus Cereus Atcc 10987 At 2.50 A Resolution
pdb|3KW0|C Chain C, Crystal Structure Of Cysteine Peptidase (Np_982244.1) From
Bacillus Cereus Atcc 10987 At 2.50 A Resolution
pdb|3KW0|D Chain D, Crystal Structure Of Cysteine Peptidase (Np_982244.1) From
Bacillus Cereus Atcc 10987 At 2.50 A Resolution
Length = 214
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 18/121 (14%)
Query: 400 VLWGS-LLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQW-----D 453
V WG L + DDG + + +E IK + + N +++ A+ + D
Sbjct: 73 VKWGEHTLIXESVEDDGVRI----VPLEHYIK--NYENSNNRYNGSLFIARHELLQNVND 126
Query: 454 DAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLREEC 513
D+ +R L+K + N G EI +V +G GRH + EY+ EC
Sbjct: 127 DSEXIRNLIKVGFSLLNSGYDKNEIAQIVARIGLGIGRHEDNN------EYICSEFVNEC 180
Query: 514 Y 514
+
Sbjct: 181 F 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,057,052
Number of Sequences: 62578
Number of extensions: 611923
Number of successful extensions: 1468
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1467
Number of HSP's gapped (non-prelim): 8
length of query: 519
length of database: 14,973,337
effective HSP length: 103
effective length of query: 416
effective length of database: 8,527,803
effective search space: 3547566048
effective search space used: 3547566048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)