BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048578
(519 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 399 bits (1025), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/516 (39%), Positives = 305/516 (59%), Gaps = 38/516 (7%)
Query: 37 LQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPST 96
LQ+C+ + KQ+HA+++K + + T+ S +S + YA +VF+ P T
Sbjct: 21 LQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDT 80
Query: 97 FAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDL---RQVKGVHSL 153
F +N +IRG++ + R + LY +M+ + +++T+P LLKAC +L + +H+
Sbjct: 81 FLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQ 140
Query: 154 VVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFD------------------------- 188
+ K + + ++++ LI Y G+ K A LLFD
Sbjct: 141 ITKL-GYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDI 199
Query: 189 ------QMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACAN 242
+M EKN ++WT MI+G+V+ +E + LF +M++S VE + ++L + LSACA
Sbjct: 200 ALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQ 259
Query: 243 LGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSI 302
LGA E GKW+H ++NK I ++ LG L DMYAKCG +EEAL VFK + +K+V W ++
Sbjct: 260 LGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTAL 319
Query: 303 IGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYK 362
I G A HG G EA+ F +MQ GIKP+ +T AVLTACS+ GL+E+GK IFY+M RDY
Sbjct: 320 ISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYN 379
Query: 363 VEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAE 422
++P ++HYGC+VDLL RA LLDEA I+ MP++PNAV+WG+LL AC N+EL E
Sbjct: 380 LKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIH---KNIELGE 436
Query: 423 IAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVV 482
E LI ++P++ G YV +NI+A +WD A + RRLMKE+ + K PGCS I +
Sbjct: 437 EIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTT 496
Query: 483 HEFMVGDGRHPCSEEIYSMLEYVAISLREECYAARM 518
HEF+ GD HP E+I S + L E Y +
Sbjct: 497 HEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPEL 532
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 387 bits (995), Expect = e-107, Method: Compositional matrix adjust.
Identities = 203/504 (40%), Positives = 321/504 (63%), Gaps = 26/504 (5%)
Query: 34 LPLLQKCTHLVQ---------FKQVHAQIIKASFDNRTISDTQLAK----LIESLVNSSQ 80
LP+++KC +L+Q +Q+HA I+ +ISD +L K + SL +
Sbjct: 12 LPMVEKCINLLQTYGVSSITKLRQIHAFSIRHGV---SISDAELGKHLIFYLVSLPSPPP 68
Query: 81 IAYAHLVFNQIINP-STFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGL-DPDSFTYPILL 138
++YAH VF++I P + F +NT+IRGYAE G LY +M +GL +PD+ TYP L+
Sbjct: 69 MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLI 128
Query: 139 KAC---GDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNV 195
KA D+R + +HS+V++S F S+I+ L+ Y N GDV SA +FD+M EK++
Sbjct: 129 KAVTTMADVRLGETIHSVVIRS-GFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDL 187
Query: 196 VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEF 255
V W ++ING + E + L+ +M G++ + T+VS+LSACA +GA LGK VH +
Sbjct: 188 VAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVY 247
Query: 256 VNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEA 315
+ K + N L D+YA+CG +EEA +F +++KN +W S+I GLA++G G+EA
Sbjct: 248 MIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEA 307
Query: 316 VKMFWQMQMS-GIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLV 374
+++F M+ + G+ P ++T + +L ACSH G++++G E F MR +YK+EP ++H+GC+V
Sbjct: 308 IELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMV 367
Query: 375 DLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434
DLL RA + +AYE I++MPM+PN V+W +LL AC D +LAE A ++++LEP
Sbjct: 368 DLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDS---DLAEFARIQILQLEPN 424
Query: 435 NDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPC 494
+ G+YVL+SN+YA++ +W D K+R+ M + K PG S++E+ + VHEF++GD HP
Sbjct: 425 HSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQ 484
Query: 495 SEEIYSMLEYVAISLREECYAARM 518
S+ IY+ L+ + LR E Y ++
Sbjct: 485 SDAIYAKLKEMTGRLRSEGYVPQI 508
>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3
SV=1
Length = 544
Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/521 (37%), Positives = 308/521 (59%), Gaps = 41/521 (7%)
Query: 23 NSNTATKSHHH--LPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQ 80
+SNT S + +L+ C ++ +HA+II+ D +L ++ +L
Sbjct: 20 DSNTLRLSRRKTLISVLRSCKNIAHVPSIHAKIIRTFHDQDAFVVFELIRVCSTL---DS 76
Query: 81 IAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKA 140
+ YA+ VF+ + NP+ + + +I G+ +G G+ LY +MI N + PD++ +LKA
Sbjct: 77 VDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKA 136
Query: 141 CGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE-------- 192
C DL+ + +H+ V+K F S +++ Y G++ +A+ +FD+M +
Sbjct: 137 C-DLKVCREIHAQVLK-LGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATV 194
Query: 193 -----------------------KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVN 229
K+ V WTAMI+G V+ K + ++LFR+M+ V N
Sbjct: 195 MINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSAN 254
Query: 230 ELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFK 289
E T V VLSAC++LGA ELG+WVH FV + L++ +G AL +MY++CG I EA RVF+
Sbjct: 255 EFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFR 314
Query: 290 IVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEK 349
++ +K+V ++N++I GLA+HG EA+ F M G +P+ VTL+A+L ACSH GL++
Sbjct: 315 VMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDI 374
Query: 350 GKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTAC 409
G E+F +M+R + VEP ++HYGC+VDLL R L+EAY I N+P+EP+ ++ G+LL+AC
Sbjct: 375 GLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSAC 434
Query: 410 ASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVK 469
N+EL E +RL + E + G YVL+SN+YA+ +W ++ ++R M++ I K
Sbjct: 435 KIH---GNMELGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSGIEK 491
Query: 470 NPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLR 510
PGCS IE+++ +HEF+VGD HP E IY L+ + LR
Sbjct: 492 EPGCSTIEVDNQIHEFLVGDIAHPHKEAIYQRLQELNRILR 532
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 362 bits (929), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 194/534 (36%), Positives = 316/534 (59%), Gaps = 58/534 (10%)
Query: 34 LPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKL-IESLVNSSQIAYAHLVFNQII 92
P + C + Q+HA IK+ T++ ++ + S ++ + YAH +FNQ+
Sbjct: 27 FPQINNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMP 86
Query: 93 NPSTFAFNTVIRGYAEAGLGHR--GIQLYTQMIGNG-LDPDSFTYPILLKAC---GDLRQ 146
+ F++NT+IRG++E+ I L+ +M+ + ++P+ FT+P +LKAC G +++
Sbjct: 87 QRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQE 146
Query: 147 VKGVHSLVVK----SKDFNSVIHSLTRL-----------ITFYCN--------------- 176
K +H L +K +F V+ +L R+ + FY N
Sbjct: 147 GKQIHGLALKYGFGGDEF--VMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKR 204
Query: 177 ----------------FGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRK 220
GD K+A++LFD+M +++VV+W MI+G+ +++ +++FR+
Sbjct: 205 DGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFRE 264
Query: 221 MRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGY 280
M+ + N +TLVSVL A + LG+ ELG+W+H + + I ++D LG+AL DMY+KCG
Sbjct: 265 MKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGI 324
Query: 281 IEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTA 340
IE+A+ VF+ + +NV TW+++I G AIHG +A+ F +M+ +G++P DV I +LTA
Sbjct: 325 IEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTA 384
Query: 341 CSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAV 400
CSH GL+E+G+ F M +EP ++HYGC+VDLL R+ LLDEA E I NMP++P+ V
Sbjct: 385 CSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDV 444
Query: 401 LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRR 460
+W +LL AC NVE+ + L+ + P + G YV +SN+YA++ W + +MR
Sbjct: 445 IWKALLGACRMQ---GNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRL 501
Query: 461 LMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLREECY 514
MKE++I K+PGCS+I+I+ V+HEF+V D HP ++EI SML ++ LR Y
Sbjct: 502 RMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGY 555
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 358 bits (919), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 177/507 (34%), Positives = 303/507 (59%), Gaps = 40/507 (7%)
Query: 31 HHHLPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQ 90
++ +P LQ+ ++K+++A II + T++ + + + YA +FNQ
Sbjct: 11 NYFIPFLQRVKSRNEWKKINASIIIHGLSQSSFMVTKMVDFCDKI---EDMDYATRLFNQ 67
Query: 91 IINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLD-PDSFTYPILLKACGDL----- 144
+ NP+ F +N++IR Y L I++Y Q++ + PD FT+P + K+C L
Sbjct: 68 VSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYL 127
Query: 145 -RQVKG-----------------------VHSLVVKSKDFNSV----IHSLTRLITFYCN 176
+QV G LV K F+ + + S L++ Y
Sbjct: 128 GKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYAR 187
Query: 177 FGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSV 236
G +K A+ LF M +K +V+WTAMI+G+ Y E +D FR+M+ +G+E +E++L+SV
Sbjct: 188 LGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISV 247
Query: 237 LSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNV 296
L +CA LG+ ELGKW+H + + + + AL +MY+KCG I +A+++F + K+V
Sbjct: 248 LPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDV 307
Query: 297 CTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYN 356
+W+++I G A HG A++ F +MQ + +KP+ +T + +L+ACSH G+ ++G F
Sbjct: 308 ISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDM 367
Query: 357 MRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGA 416
MR+DY++EP ++HYGCL+D+L RA L+ A E+ + MPM+P++ +WGSLL++C +
Sbjct: 368 MRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTP---G 424
Query: 417 NVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVI 476
N+++A +AM+ L++LEP + GNYVL++NIYA +W+D ++R++++ N+ K PG S+I
Sbjct: 425 NLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLI 484
Query: 477 EINDVVHEFMVGDGRHPCSEEIYSMLE 503
E+N++V EF+ GD P EI +L+
Sbjct: 485 EVNNIVQEFVSGDNSKPFWTEISIVLQ 511
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 348 bits (894), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 199/511 (38%), Positives = 297/511 (58%), Gaps = 49/511 (9%)
Query: 25 NTATKSHHHLPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLA-KLIESLVNSSQ--- 80
NT H L LLQ C+ K +H +++ ISD +A +L+ V+ S
Sbjct: 7 NTLRFKHPKLALLQSCSSFSDLKIIHGFLLRTHL----ISDVFVASRLLALCVDDSTFNK 62
Query: 81 ----IAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPI 136
+ YA+ +F+QI NP+ F FN +IR ++ + YTQM+ + + PD+ T+P
Sbjct: 63 PTNLLGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPF 122
Query: 137 LLKACGDLRQV---KGVHSLVVK---SKDF---NSVIH---------------------- 165
L+KA ++ V + HS +V+ D NS++H
Sbjct: 123 LIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRD 182
Query: 166 --SLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRD 223
S T ++ YC G V++A+ +FD+M +N+ TW+ MING+ K + + IDLF M+
Sbjct: 183 VVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKR 242
Query: 224 SGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEE 283
GV NE +VSV+S+CA+LGA E G+ +E+V K+ + +N LG AL DM+ +CG IE+
Sbjct: 243 EGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEK 302
Query: 284 ALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSH 343
A+ VF+ + E + +W+SII GLA+HG +A+ F QM G P DVT AVL+ACSH
Sbjct: 303 AIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSH 362
Query: 344 AGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWG 403
GL+EKG EI+ NM++D+ +EP ++HYGC+VD+L RA L EA I M ++PNA + G
Sbjct: 363 GGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILG 422
Query: 404 SLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMK 463
+LL AC N E+AE LIK++P + G YVL+SNIYA QWD +R +MK
Sbjct: 423 ALLGACKIYK---NTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMK 479
Query: 464 ERNIVKNPGCSVIEINDVVHEFMVGDG-RHP 493
E+ + K PG S+IEI+ +++F +GD +HP
Sbjct: 480 EKLVKKPPGWSLIEIDGKINKFTMGDDQKHP 510
>sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2
SV=1
Length = 559
Score = 348 bits (892), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 193/518 (37%), Positives = 306/518 (59%), Gaps = 45/518 (8%)
Query: 24 SNTATKSHHHLPLLQ-KCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESL--VNSSQ 80
S+ + + +L L+ +C+ + + KQ+HA +IK ISDT A + + + S
Sbjct: 18 SSGSLSGNTYLRLIDTQCSTMRELKQIHASLIKTGL----ISDTVTASRVLAFCCASPSD 73
Query: 81 IAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMI--GNGLDPDSFTYPILL 138
+ YA+LVF +I + + F +NT+IRG++ + I ++ M+ + P TYP +
Sbjct: 74 MNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVF 133
Query: 139 KACGDLRQVKG---VHSLVVK------SKDFNSVIH------------------------ 165
KA G L Q + +H +V+K S N+++H
Sbjct: 134 KAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVV 193
Query: 166 SLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSG 225
+ +I + G + AQ LFD+M ++N V+W +MI+G V+ +++ +D+FR+M++
Sbjct: 194 AWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKD 253
Query: 226 VEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEAL 285
V+ + T+VS+L+ACA LGASE G+W+HE++ +N LN + AL DMY KCG IEE L
Sbjct: 254 VKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGL 313
Query: 286 RVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAG 345
VF+ +K + WNS+I GLA +G E A+ +F +++ SG++PD V+ I VLTAC+H+G
Sbjct: 314 NVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSG 373
Query: 346 LIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSL 405
+ + E F M+ Y +EP++KHY +V++L A LL+EA +I+NMP+E + V+W SL
Sbjct: 374 EVHRADEFFRLMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIWSSL 433
Query: 406 LTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKER 465
L+AC NVE+A+ A + L KL+P YVL+SN YA+ +++A + R LMKER
Sbjct: 434 LSACRKI---GNVEMAKRAAKCLKKLDPDETCGYVLLSNAYASYGLFEEAVEQRLLMKER 490
Query: 466 NIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLE 503
+ K GCS IE++ VHEF+ G HP S EIYS+L+
Sbjct: 491 QMEKEVGCSSIEVDFEVHEFISCGGTHPKSAEIYSLLD 528
>sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g31920
OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1
Length = 606
Score = 344 bits (882), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 191/521 (36%), Positives = 303/521 (58%), Gaps = 11/521 (2%)
Query: 1 MLKQLVPNSQLTHFTNSANSHKNSNTATKSHHHLPLLQKCTHLVQFKQVHAQIIKASFDN 60
M+K + S L + ++ + +N K L LL++C ++ +FKQVHA+ IK S
Sbjct: 1 MIKAPILQSLLASRDDLTHNPEVNNFGGKEQECLYLLKRCHNIDEFKQVHARFIKLSLFY 60
Query: 61 RTISDTQ--LAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQL 118
+ LAK S +S + YA +F I +P TF FNT+IRGY +
Sbjct: 61 SSSFSASSVLAKCAHSGWENS-MNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCF 119
Query: 119 YTQMIGNGLDPDSFTYPILLKACGDL---RQVKGVHSLVVKSKDFNSVIHSLTRLITFYC 175
Y +M+ G +PD+FTYP LLKAC L R+ K +H V K + + LI Y
Sbjct: 120 YNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFKL-GLEADVFVQNSLINMYG 178
Query: 176 NFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKM-RDSGVEVNELTLV 234
G+++ + +F+++ K +W++M++ + E + LFR M ++ ++ E +V
Sbjct: 179 RCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMV 238
Query: 235 SVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK 294
S L ACAN GA LG +H F+ +N LN + +L DMY KCG +++AL +F+ + ++
Sbjct: 239 SALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKR 298
Query: 295 NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIF 354
N T++++I GLA+HG GE A++MF +M G++PD V ++VL ACSH+GL+++G+ +F
Sbjct: 299 NNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVF 358
Query: 355 YNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADD 414
M ++ KVEP +HYGCLVDLL RA LL+EA E I+++P+E N V+W + L+ C
Sbjct: 359 AEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEKNDVIWRTFLSQCRVRQ- 417
Query: 415 GANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCS 474
N+EL +IA + L+KL N G+Y+L+SN+Y+ WDD + R + + + + PG S
Sbjct: 418 --NIELGQIAAQELLKLSSHNPGDYLLISNLYSQGQMWDDVARTRTEIAIKGLKQTPGFS 475
Query: 475 VIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLREECYA 515
++E+ H F+ D HP +EIY ML + L+ E Y+
Sbjct: 476 IVELKGKTHRFVSQDRSHPKCKEIYKMLHQMEWQLKFEGYS 516
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 340 bits (872), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 175/485 (36%), Positives = 293/485 (60%), Gaps = 14/485 (2%)
Query: 36 LLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNS---SQIAYAHLVFNQII 92
L+ KC L + Q+ A IK+ ++ + +AKLI S S ++YA +F +
Sbjct: 35 LISKCNSLRELMQIQAYAIKSHIEDVSF----VAKLINFCTESPTESSMSYARHLFEAMS 90
Query: 93 NPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACG---DLRQVKG 149
P FN++ RGY+ L+ +++ +G+ PD++T+P LLKAC L + +
Sbjct: 91 EPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQ 150
Query: 150 VHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQK 209
+H L +K + ++ LI Y DV SA+ +FD++ E VV + AMI G+ ++
Sbjct: 151 LHCLSMK-LGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRN 209
Query: 210 NYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGA 269
E + LFR+M+ ++ NE+TL+SVLS+CA LG+ +LGKW+H++ K+ K+
Sbjct: 210 RPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNT 269
Query: 270 ALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKP 329
AL DM+AKCG +++A+ +F+ + K+ W+++I A HG E+++ MF +M+ ++P
Sbjct: 270 ALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQP 329
Query: 330 DDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEV 389
D++T + +L ACSH G +E+G++ F M + + P++KHYG +VDLL RA L++AYE
Sbjct: 330 DEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEF 389
Query: 390 IRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAK 449
I +P+ P +LW LL AC+S + N++LAE ER+ +L+ + G+YV++SN+YA
Sbjct: 390 IDKLPISPTPMLWRILLAACSSHN---NLDLAEKVSERIFELDDSHGGDYVILSNLYARN 446
Query: 450 AQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISL 509
+W+ +R++MK+R VK PGCS IE+N+VVHEF GDG + +++ L+ + L
Sbjct: 447 KKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKEL 506
Query: 510 REECY 514
+ Y
Sbjct: 507 KLSGY 511
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 339 bits (869), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 186/512 (36%), Positives = 298/512 (58%), Gaps = 24/512 (4%)
Query: 23 NSNTATKSHHH---LPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSS 79
+ + +T +HH L + C+ + Q KQ+HA ++ ++ + K+++ + S
Sbjct: 38 SPSASTAGNHHQRIFSLAETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFS 97
Query: 80 QIAYAHLVFNQIINPSTFAFNTVIRGYA-EAGLGHRGIQLYTQMIGNG-LDPDSFTYPIL 137
+ YA VF+ I N S+F +NT+IR A + LY +M+ G PD T+P +
Sbjct: 98 DVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFV 157
Query: 138 LKACG---DLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKN 194
LKAC + K VH +VK F ++ LI Y + G + A+ +FD+M E++
Sbjct: 158 LKACAYIFGFSEGKQVHCQIVK-HGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERS 216
Query: 195 VVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHE 254
+V+W +MI+ V+ Y + LFR+M+ S E + T+ SVLSACA LG+ LG W H
Sbjct: 217 LVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLSLGTWAHA 275
Query: 255 FVNKNC---IILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGC 311
F+ + C + ++ + +L +MY KCG + A +VF+ + ++++ +WN++I G A HG
Sbjct: 276 FLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGR 335
Query: 312 GEEAVKMFWQM--QMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKH 369
EEA+ F +M + ++P+ VT + +L AC+H G + KG++ F M RDY +EP ++H
Sbjct: 336 AEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEH 395
Query: 370 YGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLI 429
YGC+VDL+ RA + EA +++ +MPM+P+AV+W SLL AC GA+VEL+E +I
Sbjct: 396 YGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCK--KGASVELSEEIARNII 453
Query: 430 KLEPFND-------GNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVV 482
+ N+ G YVL+S +YA+ ++W+D G +R+LM E I K PGCS IEIN +
Sbjct: 454 GTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGIS 513
Query: 483 HEFMVGDGRHPCSEEIYSMLEYVAISLREECY 514
HEF GD HP +++IY L+ + LR Y
Sbjct: 514 HEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGY 545
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 337 bits (864), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 179/460 (38%), Positives = 281/460 (61%), Gaps = 10/460 (2%)
Query: 58 FDNRTISDT-QLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGI 116
FD D LI+ + I A +F++I ++N +I GYAE G +
Sbjct: 192 FDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEAL 251
Query: 117 QLYTQMIGNGLDPDSFTYPILLKAC---GDLRQVKGVHSLVVKSKDFNSVIHSLTRLITF 173
+L+ M+ + PD T ++ AC G + + VH L + F S + + LI
Sbjct: 252 ELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVH-LWIDDHGFGSNLKIVNALIDL 310
Query: 174 YCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTL 233
Y G++++A LF+++ K+V++W +I G+ Y+E + LF++M SG N++T+
Sbjct: 311 YSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTM 370
Query: 234 VSVLSACANLGASELGKWVHEFVNKNC--IILNDKLGAALTDMYAKCGYIEEALRVFKIV 291
+S+L ACA+LGA ++G+W+H +++K + L +L DMYAKCG IE A +VF +
Sbjct: 371 LSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSI 430
Query: 292 LEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGK 351
L K++ +WN++I G A+HG + + +F +M+ GI+PDD+T + +L+ACSH+G+++ G+
Sbjct: 431 LHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGR 490
Query: 352 EIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACAS 411
IF M +DYK+ P ++HYGC++DLL + L EA E+I M MEP+ V+W SLL AC
Sbjct: 491 HIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKM 550
Query: 412 ADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNP 471
NVEL E E LIK+EP N G+YVL+SNIYA+ +W++ K R L+ ++ + K P
Sbjct: 551 H---GNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVP 607
Query: 472 GCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLRE 511
GCS IEI+ VVHEF++GD HP + EIY MLE + + L +
Sbjct: 608 GCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEK 647
Score = 211 bits (538), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 143/449 (31%), Positives = 238/449 (53%), Gaps = 47/449 (10%)
Query: 6 VPNSQLT-HFTNSANSHKNSNTATKSHHHLPLLQKCTHLVQFKQVHAQIIKASFDNRTIS 64
VP+S HF S S + ++H L LL C L + +HAQ+IK N +
Sbjct: 10 VPSSSYPFHFLPS--SSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHN---T 64
Query: 65 DTQLAKLIESLVNSSQ---IAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQ 121
+ L+KLIE + S + YA VF I P+ +NT+ RG+A + ++LY
Sbjct: 65 NYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVC 124
Query: 122 MIGNGLDPDSFTYPILLKACGD---LRQVKGVHSLVVK---------------------- 156
MI GL P+S+T+P +LK+C ++ + +H V+K
Sbjct: 125 MISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGR 184
Query: 157 ----SKDFNSVIH----SLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQ 208
K F+ H S T LI Y + G +++AQ LFD++ K+VV+W AMI+G+ +
Sbjct: 185 LEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAET 244
Query: 209 KNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLG 268
NY+E ++LF+ M + V +E T+V+V+SACA G+ ELG+ VH +++ + N K+
Sbjct: 245 GNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIV 304
Query: 269 AALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIK 328
AL D+Y+KCG +E A +F+ + K+V +WN++IGG +EA+ +F +M SG
Sbjct: 305 NALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET 364
Query: 329 PDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHY-GCLVDLLCRARLLDEAY 387
P+DVT++++L AC+H G I+ G+ I + + K N L+D+ + ++ A+
Sbjct: 365 PNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAH 424
Query: 388 EVIRNMPMEP----NAVLWGSLLTACASA 412
+V ++ + NA+++G + A A
Sbjct: 425 QVFNSILHKSLSSWNAMIFGFAMHGRADA 453
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 336 bits (862), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 194/529 (36%), Positives = 301/529 (56%), Gaps = 42/529 (7%)
Query: 24 SNTATKSHHHLP------LLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVN 77
S TAT P L+ K + + Q+HA I++ + KL + +
Sbjct: 17 STTATARFRLPPPEKLAVLIDKSQSVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYAS 76
Query: 78 SSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPIL 137
+I ++ +F+Q I+P F F I + GL + LY Q++ + ++P+ FT+ L
Sbjct: 77 HGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSL 136
Query: 138 LKACGDLRQVKGVHSLVVK--------------------------SKDFNSV----IHSL 167
LK+C + K +H+ V+K K F+ + + S
Sbjct: 137 LKSCST-KSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSS 195
Query: 168 TRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSG-V 226
T +IT Y G+V++A+ LFD M E+++V+W MI+G+ + + + LF+K+ G
Sbjct: 196 TAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKP 255
Query: 227 EVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALR 286
+ +E+T+V+ LSAC+ +GA E G+W+H FV + I LN K+ L DMY+KCG +EEA+
Sbjct: 256 KPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVL 315
Query: 287 VFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQ-MSGIKPDDVTLIAVLTACSHAG 345
VF K++ WN++I G A+HG ++A+++F +MQ ++G++P D+T I L AC+HAG
Sbjct: 316 VFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAG 375
Query: 346 LIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSL 405
L+ +G IF +M ++Y ++P ++HYGCLV LL RA L AYE I+NM M+ ++VLW S+
Sbjct: 376 LVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSV 435
Query: 406 LTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKER 465
L +C D V EIA E LI L N G YVL+SNIYA+ ++ K+R LMKE+
Sbjct: 436 LGSCKLHGD--FVLGKEIA-EYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEK 492
Query: 466 NIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLREECY 514
IVK PG S IEI + VHEF GD H S+EIY+ML ++ ++ Y
Sbjct: 493 GIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGY 541
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 335 bits (860), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 187/530 (35%), Positives = 305/530 (57%), Gaps = 47/530 (8%)
Query: 28 TKSHHHLPLL-----QKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIA 82
T H P L + L K++H ++K + L K+ SL +A
Sbjct: 131 TPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMY-SLCGLMDMA 189
Query: 83 YAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACG 142
VF++ F++N +I GY I+L +M N + P S T ++L AC
Sbjct: 190 RG--VFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACS 247
Query: 143 DLRQ---VKGVHSLVVKSKD--------------------------FNSV----IHSLTR 169
++ K VH V + K F S+ + S T
Sbjct: 248 KVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTS 307
Query: 170 LITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVN 229
++ Y G++K A+ FDQM ++ ++WT MI+G+++ + E +++FR+M+ +G+ +
Sbjct: 308 IVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPD 367
Query: 230 ELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFK 289
E T+VSVL+ACA+LG+ E+G+W+ +++KN I + +G AL DMY KCG E+A +VF
Sbjct: 368 EFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFH 427
Query: 290 IVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEK 349
+ +++ TW +++ GLA +G G+EA+K+F+QMQ I+PDD+T + VL+AC+H+G++++
Sbjct: 428 DMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQ 487
Query: 350 GKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTAC 409
++ F MR D+++EP++ HYGC+VD+L RA L+ EAYE++R MPM PN+++WG+LL A
Sbjct: 488 ARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGAS 547
Query: 410 ASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVK 469
+D +AE+A +++++LEP N Y L+ NIYA +W D ++RR + + I K
Sbjct: 548 RLHNDEP---MAELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKK 604
Query: 470 NPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLREECYAARMP 519
PG S+IE+N HEF+ GD H SEEIY LE +A +E +AA +P
Sbjct: 605 TPGFSLIEVNGFAHEFVAGDKSHLQSEEIYMKLEELA---QESTFAAYLP 651
Score = 173 bits (439), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 121/444 (27%), Positives = 218/444 (49%), Gaps = 41/444 (9%)
Query: 8 NSQLTHFTNSANSHKNSNTATKSHHHLPLLQKCTHLVQFKQVHAQ-IIKASFDNRTISDT 66
NS+L+ F S + + + +L C QFKQ+H+Q I + N T
Sbjct: 12 NSELSIFKALLMSTITESISNDYSRFISILGVCKTTDQFKQLHSQSITRGVAPNPTFQKK 71
Query: 67 QLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNG 126
L ++YA+ +F +I P +N +I+G+++ G++LY M+ G
Sbjct: 72 LFVFWCSRL--GGHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEG 129
Query: 127 LDPDSFTYPILLKAC----GDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKS 182
+ PDS T+P LL G L K +H VVK S ++ L+ Y G +
Sbjct: 130 VTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKF-GLGSNLYVQNALVKMYSLCGLMDM 188
Query: 183 AQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACAN 242
A+ +FD+ +++V +W MI+G+ + K Y E I+L +M + V +TL+ VLSAC+
Sbjct: 189 ARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSK 248
Query: 243 LGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSI 302
+ +L K VHE+V++ + +L AL + YA CG ++ A+R+F+ + ++V +W SI
Sbjct: 249 VKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSI 308
Query: 303 IGGLAIH-------------------------------GCGEEAVKMFWQMQMSGIKPDD 331
+ G GC E++++F +MQ +G+ PD+
Sbjct: 309 VKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDE 368
Query: 332 VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIR 391
T+++VLTAC+H G +E G+ I + ++ K++ +V L+D+ + ++A +V
Sbjct: 369 FTMVSVLTACAHLGSLEIGEWIKTYIDKN-KIKNDVVVGNALIDMYFKCGCSEKAQKVFH 427
Query: 392 NMPMEPNAVLWGSLLTACASADDG 415
+M + + W +++ A+ G
Sbjct: 428 DMD-QRDKFTWTAMVVGLANNGQG 450
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 335 bits (859), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 181/525 (34%), Positives = 301/525 (57%), Gaps = 47/525 (8%)
Query: 31 HHHLPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQL-AKLIESLVNSSQ--IAYAHLV 87
H + LL + +Q+HA++ + + T+ D L ++++ S + YA+ +
Sbjct: 7 HPAIALLDSGITFKEVRQIHAKL----YVDGTLKDDHLVGHFVKAVALSDHKYLDYANQI 62
Query: 88 FNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMI--GNGLDPDSFTYPILLKACGDLR 145
++ P+ FA N++IR + ++ + + Y +++ GN L PD++T L++AC LR
Sbjct: 63 LDRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLR 122
Query: 146 QVKG---VHSLVVKSKDFNSVIHSLTRLITFYCNFG------------------------ 178
+ VH + ++ + F++ H T LI+ Y G
Sbjct: 123 MRETGLQVHGMTIR-RGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMV 181
Query: 179 -------DVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNEL 231
DV A+ LF+ M E++ + W AMI+G+ + RE +++F M+ GV+VN +
Sbjct: 182 TACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGV 241
Query: 232 TLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIV 291
++SVLSAC LGA + G+W H ++ +N I + +L L D+YAKCG +E+A+ VF +
Sbjct: 242 AMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGM 301
Query: 292 LEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGK 351
EKNV TW+S + GLA++G GE+ +++F M+ G+ P+ VT ++VL CS G +++G+
Sbjct: 302 EEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQ 361
Query: 352 EIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACAS 411
F +MR ++ +EP ++HYGCLVDL RA L++A +I+ MPM+P+A +W SLL A
Sbjct: 362 RHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRM 421
Query: 412 ADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNP 471
N+EL +A +++++LE N G YVL+SNIYA WD+ +R+ MK + + K P
Sbjct: 422 Y---KNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQP 478
Query: 472 GCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLREECYAA 516
GCSV+E+N VHEF VGD HP +I ++ + ++ LR Y A
Sbjct: 479 GCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKA 523
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 333 bits (854), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 188/501 (37%), Positives = 287/501 (57%), Gaps = 15/501 (2%)
Query: 18 ANSHKNSNTATKSHHHLPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVN 77
+N N N H L L + +++ K H +II+ + T L LI +
Sbjct: 55 SNEFSNRNLV---HEILQLCARNGAVMEAKACHGKIIRIDLEGDV---TLLNVLINAYSK 108
Query: 78 SSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPIL 137
+ A VF+ ++ S ++NT+I Y + + ++ +M G FT +
Sbjct: 109 CGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSV 168
Query: 138 LKACG---DLRQVKGVHSLVVKS-KDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEK 193
L ACG D + K +H L VK+ D N ++ T L+ Y G +K A +F+ M +K
Sbjct: 169 LSACGVNCDALECKKLHCLSVKTCIDLN--LYVGTALLDLYAKCGMIKDAVQVFESMQDK 226
Query: 194 NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVH 253
+ VTW++M+ G+V+ KNY E + L+R+ + +E N+ TL SV+ AC+NL A GK +H
Sbjct: 227 SSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMH 286
Query: 254 EFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGE 313
+ K+ N + ++ DMYAKCG + E+ +F V EKN+ WN+II G A H +
Sbjct: 287 AVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPK 346
Query: 314 EAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCL 373
E + +F +MQ G+ P++VT ++L+ C H GL+E+G+ F MR Y + PNV HY C+
Sbjct: 347 EVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCM 406
Query: 374 VDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEP 433
VD+L RA LL EAYE+I+++P +P A +WGSLL +C N+ELAE+A E+L +LEP
Sbjct: 407 VDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYK---NLELAEVAAEKLFELEP 463
Query: 434 FNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHP 493
N GN+VL+SNIYAA QW++ K R+L+++ ++ K G S I+I D VH F VG+ HP
Sbjct: 464 ENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHP 523
Query: 494 CSEEIYSMLEYVAISLREECY 514
EI S L+ + I R+ Y
Sbjct: 524 RIREICSTLDNLVIKFRKFGY 544
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 332 bits (851), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 191/510 (37%), Positives = 293/510 (57%), Gaps = 46/510 (9%)
Query: 42 HLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNT 101
+L KQ H +I + ++ +AK IE+ N+ + YA+ VF P+T+ NT
Sbjct: 27 NLKTLKQSHCYMIITGLNRDNLN---VAKFIEACSNAGHLRYAYSVFTHQPCPNTYLHNT 83
Query: 102 VIRGYA---EAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQV---KGVHSLVV 155
+IR + E I +Y ++ PD+FT+P +LK + V + +H VV
Sbjct: 84 MIRALSLLDEPNAHSIAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVV 143
Query: 156 KSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNV-------------------- 195
F+S +H +T LI Y + G + A+ +FD+M K+V
Sbjct: 144 VF-GFDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEAR 202
Query: 196 -------------VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACAN 242
V+WT +I+G+ K E I++F++M VE +E+TL++VLSACA+
Sbjct: 203 SLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACAD 262
Query: 243 LGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSI 302
LG+ ELG+ + +V+ + L A+ DMYAK G I +AL VF+ V E+NV TW +I
Sbjct: 263 LGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTI 322
Query: 303 IGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYK 362
I GLA HG G EA+ MF +M +G++P+DVT IA+L+ACSH G ++ GK +F +MR Y
Sbjct: 323 IAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYG 382
Query: 363 VEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAE 422
+ PN++HYGC++DLL RA L EA EVI++MP + NA +WGSLL A D +EL E
Sbjct: 383 IHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHD---LELGE 439
Query: 423 IAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVV 482
A+ LIKLEP N GNY+L++N+Y+ +WD++ MR +MK + K G S IE+ + V
Sbjct: 440 RALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAGESSIEVENRV 499
Query: 483 HEFMVGDGRHPCSEEIYSMLEYVAISLREE 512
++F+ GD HP E I+ +L+ + + ++ +
Sbjct: 500 YKFISGDLTHPQVERIHEILQEMDLQIQSK 529
>sp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protein At5g08510
OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1
Length = 511
Score = 329 bits (843), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 192/503 (38%), Positives = 280/503 (55%), Gaps = 48/503 (9%)
Query: 47 KQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGY 106
KQ+HA ++ D + L++ L+ + YA +F+ N TF +N +I+ Y
Sbjct: 5 KQLHAHCLRTGVD-------ETKDLLQRLLLIPNLVYARKLFDHHQNSCTFLYNKLIQAY 57
Query: 107 AEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDL---RQVKGVHSLVVKSKDFNSV 163
H I LY + +GL P T+ + A R ++ +HS +S F S
Sbjct: 58 YVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRLLHSQFFRS-GFESD 116
Query: 164 IHSLTRLITFYCNFG-------------------------------DVKSAQLLFDQMTE 192
T LIT Y G D+K+A LFD M
Sbjct: 117 SFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMPR 176
Query: 193 KNVVTWTAMINGHVKQKNYREGIDLFRKM-RDSGVEVNELTLVSVLSACANLGASELGKW 251
KNV +WT +I+G + NY E + +F M +D V+ N +T+VSVL ACANLG E+G+
Sbjct: 177 KNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRR 236
Query: 252 VHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFK-IVLEKNVCTWNSIIGGLAIHG 310
+ + +N N + A +MY+KCG I+ A R+F+ + ++N+C+WNS+IG LA HG
Sbjct: 237 LEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHG 296
Query: 311 CGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHY 370
+EA+ +F QM G KPD VT + +L AC H G++ KG+E+F +M +K+ P ++HY
Sbjct: 297 KHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHY 356
Query: 371 GCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIK 430
GC++DLL R L EAY++I+ MPM+P+AV+WG+LL AC+ NVE+AEIA E L K
Sbjct: 357 GCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFH---GNVEIAEIASEALFK 413
Query: 431 LEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCS-VIEINDVVHEFMVGD 489
LEP N GN V+MSNIYAA +WD +MR+LMK+ + K G S +E+ VH+F V D
Sbjct: 414 LEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYSYFVEVGVDVHKFTVED 473
Query: 490 GRHPCSEEIYSMLEYVAISLREE 512
HP S EIY +LE + ++ E
Sbjct: 474 KSHPRSYEIYQVLEEIFRRMKLE 496
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 328 bits (841), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 177/500 (35%), Positives = 277/500 (55%), Gaps = 13/500 (2%)
Query: 18 ANSHKNSNTATKSHHHLPLLQKCTHLVQFK---QVHAQIIKASFDNRTISDTQLAKLIES 74
A H N S H P L K ++ Q HA I+K D+ L I
Sbjct: 91 AYRHMRRNGVIPSRHTFPPLLKAVFKLRDSNPFQFHAHIVKFGLDSDPFVRNSL---ISG 147
Query: 75 LVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTY 134
+S +A +F+ + + +I G+ G + + +M G+ + T
Sbjct: 148 YSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTV 207
Query: 135 PILLKACG---DLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMT 191
+LKA G D+R + VH L +++ + + L+ Y AQ +FD+M
Sbjct: 208 VSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMP 267
Query: 192 EKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKW 251
+NVVTWTA+I G+V+ + + +G+ +F +M S V NE TL SVLSACA++GA G+
Sbjct: 268 SRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRR 327
Query: 252 VHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGC 311
VH ++ KN I +N G L D+Y KCG +EEA+ VF+ + EKNV TW ++I G A HG
Sbjct: 328 VHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGY 387
Query: 312 GEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYG 371
+A +F+ M S + P++VT +AVL+AC+H GL+E+G+ +F +M+ + +EP HY
Sbjct: 388 ARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYA 447
Query: 372 CLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKL 431
C+VDL R LL+EA +I MPMEP V+WG+L +C D EL + A R+IKL
Sbjct: 448 CMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKD---YELGKYAASRVIKL 504
Query: 432 EPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGR 491
+P + G Y L++N+Y+ WD+ ++R+ MK++ +VK+PG S IE+ + EF+ D +
Sbjct: 505 QPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVKGKLCEFIAFDDK 564
Query: 492 HPC-SEEIYSMLEYVAISLR 510
P S+++Y L+ V + +R
Sbjct: 565 KPLESDDLYKTLDTVGVQMR 584
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 325 bits (834), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 181/500 (36%), Positives = 286/500 (57%), Gaps = 14/500 (2%)
Query: 23 NSNTATKSHHHLPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIA 82
+ A S + +++ + Q +QVHA +I + S + L KLI ++ IA
Sbjct: 2 TTKVAANSAAYEAIVRAGPRVKQLQQVHAHLIVTGYGR---SRSLLTKLITLACSARAIA 58
Query: 83 YAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACG 142
Y HL+F + P F FN+VI+ ++ L + Y +M+ + + P ++T+ ++K+C
Sbjct: 59 YTHLLFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCA 118
Query: 143 DL---RQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWT 199
DL R KGVH V S F + L+TFY GD++ A+ +FD+M EK++V W
Sbjct: 119 DLSALRIGKGVHCHAVVS-GFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWN 177
Query: 200 AMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKN 259
++++G + E I +F +MR+SG E + T VS+LSACA GA LG WVH+++
Sbjct: 178 SLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISE 237
Query: 260 CIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMF 319
+ LN KLG AL ++Y++CG + +A VF + E NV W ++I HG G++AV++F
Sbjct: 238 GLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELF 297
Query: 320 WQMQMS-GIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLC 378
+M+ G P++VT +AVL+AC+HAGL+E+G+ ++ M + Y++ P V+H+ C+VD+L
Sbjct: 298 NKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLG 357
Query: 379 RARLLDEAYEVIRNMPMEPNAV---LWGSLLTACASADDGANVELAEIAMERLIKLEPFN 435
RA LDEAY+ I + A LW ++L AC N +L +RLI LEP N
Sbjct: 358 RAGFLDEAYKFIHQLDATGKATAPALWTAMLGACKMHR---NYDLGVEIAKRLIALEPDN 414
Query: 436 DGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCS 495
G++V++SNIYA + D+ +R M N+ K G SVIE+ + + F +GD H +
Sbjct: 415 PGHHVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQET 474
Query: 496 EEIYSMLEYVAISLREECYA 515
EIY LE + +E YA
Sbjct: 475 GEIYRYLETLISRCKEIGYA 494
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 323 bits (829), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 170/503 (33%), Positives = 280/503 (55%), Gaps = 42/503 (8%)
Query: 47 KQVHAQIIKASFDNRTISDTQLA-KLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRG 105
+ +H +K++ SD +A LI + + A VF I ++N++I G
Sbjct: 151 QSLHGMAVKSAVG----SDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMING 206
Query: 106 YAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLV--VKSKDFNSV 163
+ + G + ++L+ +M + T +L AC +R ++ + ++ N
Sbjct: 207 FVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVN 266
Query: 164 IHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRD 223
+ ++ Y G ++ A+ LFD M EK+ VTWT M++G+ ++Y ++ M
Sbjct: 267 LTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQ 326
Query: 224 SGV--------------------------------EVNELTLVSVLSACANLGASELGKW 251
+ ++N++TLVS LSACA +GA ELG+W
Sbjct: 327 KDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRW 386
Query: 252 VHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGC 311
+H ++ K+ I +N + +AL MY+KCG +E++ VF V +++V W+++IGGLA+HGC
Sbjct: 387 IHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGC 446
Query: 312 GEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYG 371
G EAV MF++MQ + +KP+ VT V ACSH GL+++ + +F+ M +Y + P KHY
Sbjct: 447 GNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYA 506
Query: 372 CLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKL 431
C+VD+L R+ L++A + I MP+ P+ +WG+LL AC AN+ LAE+A RL++L
Sbjct: 507 CIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIH---ANLNLAEMACTRLLEL 563
Query: 432 EPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGR 491
EP NDG +VL+SNIYA +W++ ++R+ M+ + K PGCS IEI+ ++HEF+ GD
Sbjct: 564 EPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNA 623
Query: 492 HPCSEEIYSMLEYVAISLREECY 514
HP SE++Y L V L+ Y
Sbjct: 624 HPMSEKVYGKLHEVMEKLKSNGY 646
Score = 186 bits (473), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 129/475 (27%), Positives = 241/475 (50%), Gaps = 48/475 (10%)
Query: 11 LTHFTNSANSHKNSNTATKSHHHLPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAK 70
L N +N ++ + +S H + L+++C L Q KQ H +I+ + S ++L
Sbjct: 12 LPRHPNFSNPNQPTTNNERSRH-ISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFA 70
Query: 71 LIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNG-LDP 129
+ +L + + + YA VF++I P++FA+NT+IR YA I + M+ P
Sbjct: 71 MA-ALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYP 129
Query: 130 DSFTYPILLKACGDLRQV---KGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLL 186
+ +T+P L+KA ++ + + +H + VKS S + LI Y + GD+ SA +
Sbjct: 130 NKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSA-VGSDVFVANSLIHCYFSCGDLDSACKV 188
Query: 187 FDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGAS 246
F + EK+VV+W +MING V++ + + ++LF+KM V+ + +T+V VLSACA +
Sbjct: 189 FTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNL 248
Query: 247 ELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGL 306
E G+ V ++ +N + +N L A+ DMY KCG IE+A R+F + EK+ TW +++ G
Sbjct: 249 EFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGY 308
Query: 307 AI-------------------------------HGCGEEAVKMFWQMQMS-GIKPDDVTL 334
AI +G EA+ +F ++Q+ +K + +TL
Sbjct: 309 AISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITL 368
Query: 335 IAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMP 394
++ L+AC+ G +E G+ I +++ + + N L+ + + L+++ EV ++
Sbjct: 369 VSTLSACAQVGALELGRWIHSYIKK-HGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE 427
Query: 395 MEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN-DGNYVLMSNIYAA 448
+ + +W +++ A G A++ K++ N N V +N++ A
Sbjct: 428 -KRDVFVWSAMIGGLAMHGCGNE------AVDMFYKMQEANVKPNGVTFTNVFCA 475
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 322 bits (825), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 179/481 (37%), Positives = 263/481 (54%), Gaps = 7/481 (1%)
Query: 34 LPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN 93
LP + + L Q+H+ K + D L I +I +F +
Sbjct: 228 LPAVAELQELRLGMQIHSLATKTGCYSH---DYVLTGFISLYSKCGKIKMGSALFREFRK 284
Query: 94 PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSL 153
P A+N +I GY G + L+ +++ +G S T L+ G L + +H
Sbjct: 285 PDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGY 344
Query: 154 VVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYRE 213
+KS +F S T L T Y +++SA+ LFD+ EK++ +W AMI+G+ + +
Sbjct: 345 CLKS-NFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTED 403
Query: 214 GIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTD 273
I LFR+M+ S N +T+ +LSACA LGA LGKWVH+ V + + AL
Sbjct: 404 AISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIG 463
Query: 274 MYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVT 333
MYAKCG I EA R+F ++ +KN TWN++I G +HG G+EA+ +F++M SGI P VT
Sbjct: 464 MYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVT 523
Query: 334 LIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM 393
+ VL ACSHAGL+++G EIF +M Y EP+VKHY C+VD+L RA L A + I M
Sbjct: 524 FLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAM 583
Query: 394 PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWD 453
+EP + +W +LL AC D LA E+L +L+P N G +VL+SNI++A +
Sbjct: 584 SIEPGSSVWETLLGACRIHKD---TNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYP 640
Query: 454 DAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLREEC 513
A +R+ K+R + K PG ++IEI + H F GD HP +EIY LE + +RE
Sbjct: 641 QAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAG 700
Query: 514 Y 514
Y
Sbjct: 701 Y 701
Score = 138 bits (348), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 114/483 (23%), Positives = 209/483 (43%), Gaps = 65/483 (13%)
Query: 33 HLPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQII 92
+L ++ T + Q HAQII F N + L KL + L + I YA +F +
Sbjct: 23 YLDFFKRSTSISHLAQTHAQIILHGFRNDI---SLLTKLTQRLSDLGAIYYARDIFLSVQ 79
Query: 93 NPSTFAFNTVIRGYAEAGLGHRGIQLYTQM-IGNGLDPDSFTYPILLKACGDLRQVKG-- 149
P F FN ++RG++ H + ++ + L P+S TY + A R +
Sbjct: 80 RPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGR 139
Query: 150 -VHS-LVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVK 207
+H VV D ++ S ++ Y F V+ A+ +FD+M EK+ + W MI+G+ K
Sbjct: 140 VIHGQAVVDGCDSELLLGS--NIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRK 197
Query: 208 QKNYREGIDLFRKM-RDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDK 266
+ Y E I +FR + +S ++ TL+ +L A A L LG +H K +D
Sbjct: 198 NEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDY 257
Query: 267 LGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSG 326
+ +Y+KCG I+ +F+ + ++ +N++I G +G E ++ +F ++ +SG
Sbjct: 258 VLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSG 317
Query: 327 IKPDDVTLIAVLTACSHAGL--------------------------------IEKGKEIF 354
+ TL++++ H L IE +++F
Sbjct: 318 ARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLF 377
Query: 355 YNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM---PMEPNAVLWGSLLTACAS 411
D E ++ + ++ + L ++A + R M PN V +L+ACA
Sbjct: 378 -----DESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACA- 431
Query: 412 ADDGANVELAEIAMER----LIKLEPFNDGNYV--LMSNIYAAKAQWDDAGKMRRLMKER 465
+L +++ + L++ F YV + +YA +A ++ LM ++
Sbjct: 432 -------QLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKK 484
Query: 466 NIV 468
N V
Sbjct: 485 NEV 487
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 321 bits (823), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 175/488 (35%), Positives = 278/488 (56%), Gaps = 22/488 (4%)
Query: 34 LPL-LQKCTHLVQFK---QVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFN 89
PL L+ CT K +H+ ++K F++ + T L + S ++ AH +F+
Sbjct: 114 FPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSG---SGRLNDAHKLFD 170
Query: 90 QIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKAC---GDLRQ 146
+I + S + + GY +G I L+ +M+ G+ PDS+ +L AC GDL
Sbjct: 171 EIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDS 230
Query: 147 ----VKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMI 202
VK + + ++ F T L+ Y G ++ A+ +FD M EK++VTW+ MI
Sbjct: 231 GEWIVKYMEEMEMQKNSFVR-----TTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMI 285
Query: 203 NGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCII 262
G+ +EGI+LF +M ++ ++ ++V LS+CA+LGA +LG+W ++++ +
Sbjct: 286 QGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFL 345
Query: 263 LNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQM 322
N + AL DMYAKCG + VFK + EK++ N+ I GLA +G + + +F Q
Sbjct: 346 TNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQT 405
Query: 323 QMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARL 382
+ GI PD T + +L C HAGLI+ G F + Y ++ V+HYGC+VDL RA +
Sbjct: 406 EKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGM 465
Query: 383 LDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLM 442
LD+AY +I +MPM PNA++WG+LL+ C D +LAE ++ LI LEP+N GNYV +
Sbjct: 466 LDDAYRLICDMPMRPNAIVWGALLSGCRLVKD---TQLAETVLKELIALEPWNAGNYVQL 522
Query: 443 SNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSML 502
SNIY+ +WD+A ++R +M ++ + K PG S IE+ VHEF+ D HP S++IY+ L
Sbjct: 523 SNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKL 582
Query: 503 EYVAISLR 510
E + +R
Sbjct: 583 EDLGNEMR 590
Score = 194 bits (494), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 118/401 (29%), Positives = 218/401 (54%), Gaps = 14/401 (3%)
Query: 45 QFKQVHAQIIKASFDNRTISDTQLAKLI-ESLVNSSQIAYAHLVFNQIINPSTFAFNTVI 103
KQ+H +I + DT L L+ + + Q Y++L+F+ P+ F +N++I
Sbjct: 28 HLKQIHVSLINHHLHH----DTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLI 83
Query: 104 RGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVK---GVHSLVVKSKDF 160
G+ L H + L+ + +GL FT+P++LKAC K +HSLVVK F
Sbjct: 84 NGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKC-GF 142
Query: 161 NSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRK 220
N + ++T L++ Y G + A LFD++ +++VVTWTA+ +G+ +RE IDLF+K
Sbjct: 143 NHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKK 202
Query: 221 MRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGY 280
M + GV+ + +V VLSAC ++G + G+W+ +++ + + N + L ++YAKCG
Sbjct: 203 MVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGK 262
Query: 281 IEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTA 340
+E+A VF ++EK++ TW+++I G A + +E +++F QM +KPD +++ L++
Sbjct: 263 MEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSS 322
Query: 341 CSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAV 400
C+ G ++ G E ++ ++ N+ L+D+ + + +EV + M E + V
Sbjct: 323 CASLGALDLG-EWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMK-EKDIV 380
Query: 401 LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVL 441
+ + ++ A +V+L+ + KL DG+ L
Sbjct: 381 IMNAAISGLAK---NGHVKLSFAVFGQTEKLGISPDGSTFL 418
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 320 bits (821), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 173/460 (37%), Positives = 260/460 (56%), Gaps = 36/460 (7%)
Query: 84 AHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKAC-- 141
A VF++ ++N +I GY + G + I +Y M G+ PD T L+ +C
Sbjct: 210 ARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSM 269
Query: 142 -GDLRQ-------------------VKGVHSLVVKSKDFNS-----------VIHSLTRL 170
GDL + V + + K D + I S T +
Sbjct: 270 LGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTM 329
Query: 171 ITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNE 230
I+ Y G + ++ LFD M EK+VV W AMI G V+ K ++ + LF++M+ S + +E
Sbjct: 330 ISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDE 389
Query: 231 LTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKI 290
+T++ LSAC+ LGA ++G W+H ++ K + LN LG +L DMYAKCG I EAL VF
Sbjct: 390 ITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHG 449
Query: 291 VLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKG 350
+ +N T+ +IIGGLA+HG A+ F +M +GI PD++T I +L+AC H G+I+ G
Sbjct: 450 IQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTG 509
Query: 351 KEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACA 410
++ F M+ + + P +KHY +VDLL RA LL+EA ++ +MPME +A +WG+LL C
Sbjct: 510 RDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCR 569
Query: 411 SADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKN 470
NVEL E A ++L++L+P + G YVL+ +Y W+DA + RR+M ER + K
Sbjct: 570 MH---GNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKI 626
Query: 471 PGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLR 510
PGCS IE+N +V EF+V D P SE+IY L + +R
Sbjct: 627 PGCSSIEVNGIVCEFIVRDKSRPESEKIYDRLHCLGRHMR 666
Score = 186 bits (471), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 211/419 (50%), Gaps = 39/419 (9%)
Query: 34 LPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN 93
L LL+KC L+ KQ+ AQ+I + ++L +L S + Y+ + I N
Sbjct: 57 LSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFC-ALSESRYLDYSVKILKGIEN 115
Query: 94 PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGL---DPDSFTYPILLKACGDLRQVKGV 150
P+ F++N IRG++E+ LY QM+ +G PD FTYP+L K C DLR
Sbjct: 116 PNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLG 175
Query: 151 HSLV--VKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQ 208
H ++ V V H I + + GD+++A+ +FD+ +++V+W +ING+ K
Sbjct: 176 HMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKI 235
Query: 209 KNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLG 268
+ I +++ M GV+ +++T++ ++S+C+ LG GK +E+V +N + + L
Sbjct: 236 GEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLV 295
Query: 269 AALTDMYAKCGYIEEALRVF-----KIVL--------------------------EKNVC 297
AL DM++KCG I EA R+F + ++ EK+V
Sbjct: 296 NALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVV 355
Query: 298 TWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNM 357
WN++IGG G++A+ +F +MQ S KPD++T+I L+ACS G ++ G I +
Sbjct: 356 LWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYI 415
Query: 358 RRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGA 416
+ Y + NV LVD+ + + EA V + N++ + +++ A D +
Sbjct: 416 EK-YSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTR-NSLTYTAIIGGLALHGDAS 472
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 86/219 (39%), Gaps = 15/219 (6%)
Query: 22 KNSNTATKSHHHLPLLQKCTHLVQFK---QVHAQIIKASFDNRTISDTQLAKLIESLVNS 78
+ SNT + L C+ L +H I K S T L + N
Sbjct: 381 QTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGN- 439
Query: 79 SQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILL 138
I+ A VF+ I ++ + +I G A G I + +MI G+ PD T+ LL
Sbjct: 440 --ISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLL 497
Query: 139 KAC--GDLRQVKGVHSLVVKSK-DFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMT-EKN 194
AC G + Q + +KS+ + N + + ++ G ++ A L + M E +
Sbjct: 498 SACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEAD 557
Query: 195 VVTWTAMINGHVKQKNYREGIDLFRKM-----RDSGVEV 228
W A++ G N G +K+ DSG+ V
Sbjct: 558 AAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYV 596
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 318 bits (815), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 175/515 (33%), Positives = 294/515 (57%), Gaps = 46/515 (8%)
Query: 34 LPLLQ---KCTHLVQFKQVHAQIIKASFDNRTISDTQL-AKLIESLVNSSQIAYAHLVFN 89
LP+L+ K + L + ++H +F T+ D + ++ + +I YA VF+
Sbjct: 115 LPILKAVSKVSALFEGMELHG----VAFKIATLCDPFVETGFMDMYASCGRINYARNVFD 170
Query: 90 QIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACG---DLRQ 146
++ + +NT+I Y GL +L+ +M + + PD ++ ACG ++R
Sbjct: 171 EMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRY 230
Query: 147 VKGVHSLVVKSKDFNSVIHSLTRLITFYC------------------------------- 175
+ ++ ++++ D H LT L+T Y
Sbjct: 231 NRAIYEFLIEN-DVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYS 289
Query: 176 NFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVS 235
G + AQ++FDQ +K++V WT MI+ +V+ +E + +F +M SG++ + +++ S
Sbjct: 290 KCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFS 349
Query: 236 VLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKN 295
V+SACANLG + KWVH ++ N + + AL +MYAKCG ++ VF+ + +N
Sbjct: 350 VISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRN 409
Query: 296 VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFY 355
V +W+S+I L++HG +A+ +F +M+ ++P++VT + VL CSH+GL+E+GK+IF
Sbjct: 410 VVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFA 469
Query: 356 NMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDG 415
+M +Y + P ++HYGC+VDL RA LL EA EVI +MP+ N V+WGSL++AC +
Sbjct: 470 SMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGE- 528
Query: 416 ANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSV 475
+EL + A +R+++LEP +DG VLMSNIYA + +W+D +RR+M+E+N+ K G S
Sbjct: 529 --LELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSR 586
Query: 476 IEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLR 510
I+ N HEF++GD RH S EIY+ L+ V L+
Sbjct: 587 IDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLK 621
Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 106/421 (25%), Positives = 194/421 (46%), Gaps = 47/421 (11%)
Query: 26 TATKSHHHLPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLI---ESLVNSSQIA 82
+T ++ L L C L KQ+HA I+ RT+ + +L + +S ++
Sbjct: 8 ASTAANTILEKLSFCKSLNHIKQLHAHIL------RTVINHKLNSFLFNLSVSSSSINLS 61
Query: 83 YAHLVFNQIINP-STFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKAC 141
YA VF+ I +P + FN +R + + I Y ++ G D F++ +LKA
Sbjct: 62 YALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAV 121
Query: 142 GD---LRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTW 198
L + +H + K T + Y + G + A+ +FD+M+ ++VVTW
Sbjct: 122 SKVSALFEGMELHGVAFKIATLCDPFVE-TGFMDMYASCGRINYARNVFDEMSHRDVVTW 180
Query: 199 TAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNK 258
MI + + E LF +M+DS V +E+ L +++SAC G + ++EF+ +
Sbjct: 181 NTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIE 240
Query: 259 NCIILNDKLGAALTDMYA-------------------------------KCGYIEEALRV 287
N + ++ L AL MYA KCG +++A +
Sbjct: 241 NDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVI 300
Query: 288 FKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLI 347
F +K++ W ++I +EA+++F +M SGIKPD V++ +V++AC++ G++
Sbjct: 301 FDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGIL 360
Query: 348 EKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLT 407
+K K + + + +E + L+++ + LD +V MP N V W S++
Sbjct: 361 DKAKWVHSCIHVN-GLESELSINNALINMYAKCGGLDATRDVFEKMPRR-NVVSWSSMIN 418
Query: 408 A 408
A
Sbjct: 419 A 419
>sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530
OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1
Length = 591
Score = 318 bits (815), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 181/506 (35%), Positives = 295/506 (58%), Gaps = 14/506 (2%)
Query: 22 KNSNTATKSHHHLPLLQKCTHLVQFKQVHAQIIKASF-DNRTISDTQLAKLIESLVNSSQ 80
K+ ++++ H L L+ T + +Q+HA +++ S N + L++L SL+
Sbjct: 3 KSISSSSGDDHLLSLIVSSTGKLHLRQIHALLLRTSLIRNSDVFHHFLSRLALSLI-PRD 61
Query: 81 IAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNG-LDPDSFTYPILLK 139
I Y+ VF+Q +NP+ NT+IR ++ + G +L+ + N L + + LK
Sbjct: 62 INYSCRVFSQRLNPTLSHCNTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALK 121
Query: 140 AC---GDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVV 196
C GDL +H + S F S +T L+ Y + A +FD++ +++ V
Sbjct: 122 CCIKSGDLLGGLQIHGKIF-SDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTV 180
Query: 197 TWTAMINGHVKQKNYREGIDLFRKMR---DSGVEVNELTLVSVLSACANLGASELGKWVH 253
+W + + +++ K R+ + LF KM+ D V+ + +T + L ACANLGA + GK VH
Sbjct: 181 SWNVLFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVH 240
Query: 254 EFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGE 313
+F+++N + L L MY++CG +++A +VF + E+NV +W ++I GLA++G G+
Sbjct: 241 DFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGK 300
Query: 314 EAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRR-DYKVEPNVKHYGC 372
EA++ F +M GI P++ TL +L+ACSH+GL+ +G F MR ++K++PN+ HYGC
Sbjct: 301 EAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGC 360
Query: 373 LVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLE 432
+VDLL RARLLD+AY +I++M M+P++ +W +LL AC D VEL E + LI+L+
Sbjct: 361 VVDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGD---VELGERVISHLIELK 417
Query: 433 PFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRH 492
G+YVL+ N Y+ +W+ ++R LMKE+ I PGCS IE+ VHEF+V D H
Sbjct: 418 AEEAGDYVLLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSH 477
Query: 493 PCSEEIYSMLEYVAISLREECYAARM 518
P EEIY ML + L+ Y A +
Sbjct: 478 PRKEEIYKMLAEINQQLKIAGYVAEI 503
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 318 bits (814), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 173/478 (36%), Positives = 266/478 (55%), Gaps = 40/478 (8%)
Query: 71 LIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDP- 129
L+ V +I A F+ + ++NT+I GYA++G QL+ + P
Sbjct: 225 LLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDE------SPV 278
Query: 130 -DSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSV------------------------- 163
D FT+ ++ R V+ L K + N V
Sbjct: 279 QDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVM 338
Query: 164 ----IHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFR 219
+ + +IT Y G + A+ LFD+M +++ V+W AMI G+ + + E + LF
Sbjct: 339 PCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFV 398
Query: 220 KMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCG 279
+M G +N + S LS CA++ A ELGK +H + K +G AL MY KCG
Sbjct: 399 QMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCG 458
Query: 280 YIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLT 339
IEEA +FK + K++ +WN++I G + HG GE A++ F M+ G+KPDD T++AVL+
Sbjct: 459 SIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLS 518
Query: 340 ACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNA 399
ACSH GL++KG++ FY M +DY V PN +HY C+VDLL RA LL++A+ +++NMP EP+A
Sbjct: 519 ACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDA 578
Query: 400 VLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMR 459
+WG+LL A N ELAE A +++ +EP N G YVL+SN+YA+ +W D GK+R
Sbjct: 579 AIWGTLLGASRVH---GNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLR 635
Query: 460 RLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLREECYAAR 517
M+++ + K PG S IEI + H F VGD HP +EI++ LE + + +++ Y ++
Sbjct: 636 VRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSK 693
Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 80/375 (21%), Positives = 170/375 (45%), Gaps = 59/375 (15%)
Query: 71 LIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPD 130
+I+ V + + A +F + ++NT++ GYA+ G ++ +M + +
Sbjct: 132 MIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMP----EKN 187
Query: 131 SFTYPILLKACGDLRQVKGVHSLVVKSKD--------------------------FNSV- 163
++ LL A +++ ++ KS++ F+S+
Sbjct: 188 DVSWNALLSAYVQNSKMEEA-CMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMN 246
Query: 164 ---IHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRK 220
+ S +IT Y G + A+ LFD+ ++V TWTAM++G+++ + E +LF K
Sbjct: 247 VRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDK 306
Query: 221 MRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVN-KNCIILNDKLGAALTDMYAKCG 279
M E NE++ ++L+ E+ K + + + +N N + YA+CG
Sbjct: 307 M----PERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWN-----TMITGYAQCG 357
Query: 280 YIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLT 339
I EA +F + +++ +W ++I G + G EA+++F QM+ G + + + + L+
Sbjct: 358 KISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALS 417
Query: 340 ACSHAGLIEKGKEIFYNM-RRDYKVEPNVKHYGCLVD-----LLCRARLLDEAYEVIRNM 393
C+ +E GK++ + + Y+ GC V + C+ ++EA ++ + M
Sbjct: 418 TCADVVALELGKQLHGRLVKGGYET-------GCFVGNALLLMYCKCGSIEEANDLFKEM 470
Query: 394 PMEPNAVLWGSLLTA 408
+ + V W +++
Sbjct: 471 AGK-DIVSWNTMIAG 484
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 139/303 (45%), Gaps = 32/303 (10%)
Query: 131 SFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRL-----------ITFYCNFGD 179
S T P+L D+++ S +++ N + R+ I+ Y G+
Sbjct: 51 SQTKPLLKCGDSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGE 110
Query: 180 VKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSA 239
+ A+ LFD+M E+++V+W MI G+V+ +N + +LF M + V + ++LS
Sbjct: 111 FELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDV----CSWNTMLSG 166
Query: 240 CANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTW 299
A G + + V + + + ND AL Y + +EEA +FK + +W
Sbjct: 167 YAQNGCVDDARSVFDRMPEK----NDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSW 222
Query: 300 NSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRR 359
N ++GG EA + F M + D V+ ++T + +G I++ +++F
Sbjct: 223 NCLLGGFVKKKKIVEARQFFDSMNVR----DVVSWNTIITGYAQSGKIDEARQLF----- 273
Query: 360 DYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVE 419
D +V + +V + R+++EA E+ MP E N V W ++L A G +E
Sbjct: 274 DESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMP-ERNEVSWNAML---AGYVQGERME 329
Query: 420 LAE 422
+A+
Sbjct: 330 MAK 332
>sp|Q9SR01|PP212_ARATH Pentatricopeptide repeat-containing protein At3g04750,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E81 PE=2
SV=1
Length = 661
Score = 317 bits (813), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 178/514 (34%), Positives = 293/514 (57%), Gaps = 50/514 (9%)
Query: 34 LPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN 93
L L++ + L + KQ+H II + ++ + L++ + A VF ++ +
Sbjct: 137 LYLMKASSFLSEVKQIHCHIIVSG--CLSLGNYLWNSLVKFYMELGNFGVAEKVFARMPH 194
Query: 94 PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACG---DLRQVKGV 150
P +FN +I GYA+ G ++LY +M+ +G++PD +T LL CG D+R KGV
Sbjct: 195 PDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRLGKGV 254
Query: 151 HSLV----------------------------VKSKDFNSV----IHSLTRLITFYCNFG 178
H + + + F+++ + S ++ + G
Sbjct: 255 HGWIERRGPVYSSNLILSNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLG 314
Query: 179 DVKSAQLLFDQMTEKNVVTWTAMINGHVK----QKNYREGIDLFRKMRD-SGVEVNELTL 233
D+++AQ +FDQM ++++V+W +++ G+ K Q+ RE LF +M V+ + +T+
Sbjct: 315 DMEAAQAVFDQMPKRDLVSWNSLLFGYSKKGCDQRTVRE---LFYEMTIVEKVKPDRVTM 371
Query: 234 VSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE 293
VS++S AN G G+WVH V + + + L +AL DMY KCG IE A VFK E
Sbjct: 372 VSLISGAANNGELSHGRWVHGLVIRLQLKGDAFLSSALIDMYCKCGIIERAFMVFKTATE 431
Query: 294 KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEI 353
K+V W S+I GLA HG G++A+++F +MQ G+ P++VTL+AVLTACSH+GL+E+G +
Sbjct: 432 KDVALWTSMITGLAFHGNGQQALQLFGRMQEEGVTPNNVTLLAVLTACSHSGLVEEGLHV 491
Query: 354 FYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVI-RNMPMEPNAVLWGSLLTACASA 412
F +M+ + +P +HYG LVDLLCRA ++EA +++ + MPM P+ +WGS+L+AC
Sbjct: 492 FNHMKDKFGFDPETEHYGSLVDLLCRAGRVEEAKDIVQKKMPMRPSQSMWGSILSACRGG 551
Query: 413 DDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPG 472
+D +E AE+A+ L+KLEP +G YVL+SNIYA +W + K R M+ R + K G
Sbjct: 552 ED---IETAELALTELLKLEPEKEGGYVLLSNIYATVGRWGYSDKTREAMENRGVKKTAG 608
Query: 473 CSVIEINDVVHEFMVGDGR-HPCSEEIYSMLEYV 505
S + + +H F+ + + HP EI +L+++
Sbjct: 609 YSSVVGVEGLHRFVAAEKQNHPRWTEIKRILQHL 642
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 111/422 (26%), Positives = 207/422 (49%), Gaps = 41/422 (9%)
Query: 30 SHHHLPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVF- 88
+H L LL+ C QFKQV AQI++ + T ++L ++ + A L+F
Sbjct: 34 NHQSLVLLENCNSRNQFKQVLAQIMRFNLICDTFPMSRLI-FFSAITYPENLDLAKLLFL 92
Query: 89 NQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVK 148
N NP+ F +NT+I + + + LY+ MI + + PD T+ L+KA L +VK
Sbjct: 93 NFTPNPNVFVYNTMISAVSSSK--NECFGLYSSMIRHRVSPDRQTFLYLMKASSFLSEVK 150
Query: 149 GVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQ 208
+H ++ S + + L+ FY G+ A+ +F +M +V ++ MI G+ KQ
Sbjct: 151 QIHCHIIVSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQ 210
Query: 209 KNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDK-- 266
E + L+ KM G+E +E T++S+L C +L LGK VH ++ + + +
Sbjct: 211 GFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLI 270
Query: 267 LGAALTDMYAKC-------------------------------GYIEEALRVFKIVLEKN 295
L AL DMY KC G +E A VF + +++
Sbjct: 271 LSNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRD 330
Query: 296 VCTWNSIIGGLAIHGCGEEAVK-MFWQMQM-SGIKPDDVTLIAVLTACSHAGLIEKGKEI 353
+ +WNS++ G + GC + V+ +F++M + +KPD VT++++++ ++ G + G+ +
Sbjct: 331 LVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWV 390
Query: 354 FYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASAD 413
+ + +++ + L+D+ C+ +++ A+ V + E + LW S++T A
Sbjct: 391 -HGLVIRLQLKGDAFLSSALIDMYCKCGIIERAFMVFKT-ATEKDVALWTSMITGLAFHG 448
Query: 414 DG 415
+G
Sbjct: 449 NG 450
>sp|Q56X05|PPR15_ARATH Pentatricopeptide repeat-containing protein At1g06145
OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2
Length = 577
Score = 317 bits (811), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 180/534 (33%), Positives = 290/534 (54%), Gaps = 71/534 (13%)
Query: 36 LLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLA-KLIESLVNSSQIAYAHLVFNQIINP 94
++++C+ + A +IK S + D +L + I + + ++ A Q+ P
Sbjct: 34 IIKQCSTPKLLESALAAMIKTSLNQ----DCRLMNQFITACTSFKRLDLAVSTMTQMQEP 89
Query: 95 STFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKA-------------- 140
+ F +N + +G+ R ++LY +M+ + + P S+TY L+KA
Sbjct: 90 NVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASSFASRFGESLQAH 149
Query: 141 ----------------------CGDLRQVKGVHSLVVKSKDF------------------ 160
G +R+ + V + + D
Sbjct: 150 IWKFGFGFHVKIQTTLIDFYSATGRIREARKVFDEMPERDDIAWTTMVSAYRRVLDMDSA 209
Query: 161 NSVIHSLTR--------LITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYR 212
NS+ + ++ LI Y G+++ A+ LF+QM K++++WT MI G+ + K YR
Sbjct: 210 NSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYR 269
Query: 213 EGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALT 272
E I +F KM + G+ +E+T+ +V+SACA+LG E+GK VH + +N +L+ +G+AL
Sbjct: 270 EAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALV 329
Query: 273 DMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDV 332
DMY+KCG +E AL VF + +KN+ WNSII GLA HG +EA+KMF +M+M +KP+ V
Sbjct: 330 DMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAV 389
Query: 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRN 392
T ++V TAC+HAGL+++G+ I+ +M DY + NV+HYG +V L +A L+ EA E+I N
Sbjct: 390 TFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGN 449
Query: 393 MPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQW 452
M EPNAV+WG+LL C N+ +AEIA +L+ LEP N G Y L+ ++YA + +W
Sbjct: 450 MEFEPNAVIWGALLDGCRIHK---NLVIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRW 506
Query: 453 DDAGKMRRLMKERNIVK-NPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYV 505
D ++R M+E I K PG S I I+ H F D H S+E+ +L+ +
Sbjct: 507 RDVAEIRGRMRELGIEKICPGTSSIRIDKRDHLFAAADKSHSASDEVCLLLDEI 560
>sp|Q9FG85|PP415_ARATH Pentatricopeptide repeat-containing protein At5g43790
OS=Arabidopsis thaliana GN=PCMP-E30 PE=2 SV=1
Length = 460
Score = 314 bits (805), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 175/467 (37%), Positives = 272/467 (58%), Gaps = 24/467 (5%)
Query: 24 SNTATKSHHHLPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAY 83
S + +K+H L L+ KC L KQ+HAQII + T ++L L ++ ++Y
Sbjct: 3 SPSTSKNHRCLNLISKCKSLQNLKQIHAQIITIGLSHHTYPLSKLLHLSSTVC----LSY 58
Query: 84 AHLVFNQIINPSTFAFNTVIRGYAE---AGLGHRGIQLYTQMIG---NGLDPDSFTYPIL 137
A + QI NPS F +NT+I + H LY Q++ N + P+ FTYP L
Sbjct: 59 ALSILRQIPNPSVFLYNTLISSIVSNHNSTQTHLAFSLYDQILSSRSNFVRPNEFTYPSL 118
Query: 138 LKACG-DL---RQVKGVHSLVVKS-KDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE 192
KA G D R + +H+ V+K + N L+ FY N G ++ A+ LF+++ E
Sbjct: 119 FKASGFDAQWHRHGRALHAHVLKFLEPVNHDRFVQAALVGFYANCGKLREARSLFERIRE 178
Query: 193 KNVVTWTAMINGHVKQKNY---REGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELG 249
++ TW ++ + + E + LF +M+ V NEL+LV+++ +CANLG G
Sbjct: 179 PDLATWNTLLAAYANSEEIDSDEEVLLLFMRMQ---VRPNELSLVALIKSCANLGEFVRG 235
Query: 250 KWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIH 309
W H +V KN + LN +G +L D+Y+KCG + A +VF + +++V +N++I GLA+H
Sbjct: 236 VWAHVYVLKNNLTLNQFVGTSLIDLYSKCGCLSFARKVFDEMSQRDVSCYNAMIRGLAVH 295
Query: 310 GCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKH 369
G G+E ++++ + G+ PD T + ++ACSH+GL+++G +IF +M+ Y +EP V+H
Sbjct: 296 GFGQEGIELYKSLISQGLVPDSATFVVTISACSHSGLVDEGLQIFNSMKAVYGIEPKVEH 355
Query: 370 YGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLI 429
YGCLVDLL R+ L+EA E I+ MP++PNA LW S L S+ + E EIA++ L+
Sbjct: 356 YGCLVDLLGRSGRLEEAEECIKKMPVKPNATLWRSFL---GSSQTHGDFERGEIALKHLL 412
Query: 430 KLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVI 476
LE N GNYVL+SNIYA +W D K R LMK+ + K+PG S +
Sbjct: 413 GLEFENSGNYVLLSNIYAGVNRWTDVEKTRELMKDHRVNKSPGISTL 459
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 313 bits (802), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 175/519 (33%), Positives = 287/519 (55%), Gaps = 19/519 (3%)
Query: 9 SQLTHFTNSANSHKNSNTATKSHHHLP---LLQKCT---HLVQFKQVHAQIIKASFDNRT 62
S+ HF ++ + N A S LL+ C+ HL + VHAQ+ + FD
Sbjct: 95 SRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADV 154
Query: 63 ISDTQLAKLIESLVNSSQIAYAHLVFNQIINP--STFAFNTVIRGYAEAGLGHRGIQLYT 120
L L ++ A VF + P + ++ ++ YA+ G +++++
Sbjct: 155 FVQNGLIAL---YAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFS 211
Query: 121 QMIGNGLDPDSFTYPILLKA---CGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNF 177
QM + PD +L A DL+Q + +H+ VVK L L T Y
Sbjct: 212 QMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVK-MGLEIEPDLLISLNTMYAKC 270
Query: 178 GDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVL 237
G V +A++LFD+M N++ W AMI+G+ K RE ID+F +M + V + +++ S +
Sbjct: 271 GQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAI 330
Query: 238 SACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVC 297
SACA +G+ E + ++E+V ++ + + +AL DM+AKCG +E A VF L+++V
Sbjct: 331 SACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVV 390
Query: 298 TWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNM 357
W+++I G +HG EA+ ++ M+ G+ P+DVT + +L AC+H+G++ +G F+N
Sbjct: 391 VWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREG-WWFFNR 449
Query: 358 RRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGAN 417
D+K+ P +HY C++DLL RA LD+AYEVI+ MP++P +WG+LL+AC +
Sbjct: 450 MADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKH---RH 506
Query: 418 VELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIE 477
VEL E A ++L ++P N G+YV +SN+YAA WD ++R MKE+ + K+ GCS +E
Sbjct: 507 VELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVE 566
Query: 478 INDVVHEFMVGDGRHPCSEEIYSMLEYVAISLREECYAA 516
+ + F VGD HP EEI +E++ L+E + A
Sbjct: 567 VRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVA 605
Score = 176 bits (446), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 111/401 (27%), Positives = 208/401 (51%), Gaps = 21/401 (5%)
Query: 14 FTNSANSHKNSNTATKSHHHLPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIE 73
+TNS H +S A+ L+ TH Q KQ+HA+++ S + KLI
Sbjct: 13 YTNSG-IHSDSFYAS-------LIDSATHKAQLKQIHARLLVLGLQ---FSGFLITKLIH 61
Query: 74 SLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFT 133
+ + I +A VF+ + P F +N +IRGY+ + +Y+ M + PDSFT
Sbjct: 62 ASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFT 121
Query: 134 YPILLKACGDLRQV---KGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFD-- 188
+P LLKAC L + + VH+ V + F++ + LI Y + SA+ +F+
Sbjct: 122 FPHLLKACSGLSHLQMGRFVHAQVFR-LGFDADVFVQNGLIALYAKCRRLGSARTVFEGL 180
Query: 189 QMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASEL 248
+ E+ +V+WTA+++ + + E +++F +MR V+ + + LVSVL+A L +
Sbjct: 181 PLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQ 240
Query: 249 GKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAI 308
G+ +H V K + + L +L MYAKCG + A +F + N+ WN++I G A
Sbjct: 241 GRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAK 300
Query: 309 HGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIF-YNMRRDYKVEPNV 367
+G EA+ MF +M ++PD +++ + ++AC+ G +E+ + ++ Y R DY+ + +
Sbjct: 301 NGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFI 360
Query: 368 KHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTA 408
L+D+ + ++ A ++ + ++ + V+W +++
Sbjct: 361 S--SALIDMFAKCGSVEGA-RLVFDRTLDRDVVVWSAMIVG 398
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 311 bits (797), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 175/479 (36%), Positives = 279/479 (58%), Gaps = 22/479 (4%)
Query: 48 QVHAQIIKASFDNRTISDTQLA-KLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGY 106
+VH I+ DN + D LA KLI + + YA VF++ + + +N + R
Sbjct: 98 RVHRHIL----DNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRAL 153
Query: 107 AEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKAC-------GDLRQVKGVHSLVVKSKD 159
AG G + LY +M G++ D FTY +LKAC L + K +H+ + + +
Sbjct: 154 TLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTR-RG 212
Query: 160 FNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFR 219
++S ++ +T L+ Y FG V A +F M +NVV+W+AMI + K E + FR
Sbjct: 213 YSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFR 272
Query: 220 KM----RDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMY 275
+M +DS N +T+VSVL ACA+L A E GK +H ++ + + + +AL MY
Sbjct: 273 EMMRETKDS--SPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMY 330
Query: 276 AKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLI 335
+CG +E RVF + +++V +WNS+I +HG G++A+++F +M +G P VT +
Sbjct: 331 GRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFV 390
Query: 336 AVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPM 395
+VL ACSH GL+E+GK +F M RD+ ++P ++HY C+VDLL RA LDEA +++++M
Sbjct: 391 SVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRT 450
Query: 396 EPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDA 455
EP +WGSLL +C NVELAE A RL LEP N GNYVL+++IYA WD+
Sbjct: 451 EPGPKVWGSLLGSCRIH---GNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEV 507
Query: 456 GKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLREECY 514
++++L++ R + K PG +E+ ++ F+ D +P E+I++ L +A ++E+ Y
Sbjct: 508 KRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGY 566
Score = 102 bits (254), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 144/281 (51%), Gaps = 13/281 (4%)
Query: 39 KCT--HLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPST 96
+CT HL++ K++HA + + + + + L++ + YA VF + +
Sbjct: 192 ECTVNHLMKGKEIHAHLTRRGYSSHVYI---MTTLVDMYARFGCVDYASYVFGGMPVRNV 248
Query: 97 FAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLD--PDSFTYPILLKACGD---LRQVKGVH 151
+++ +I YA+ G ++ + +M+ D P+S T +L+AC L Q K +H
Sbjct: 249 VSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIH 308
Query: 152 SLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNY 211
+++ + +S++ ++ L+T Y G ++ Q +FD+M +++VV+W ++I+ +
Sbjct: 309 GYILR-RGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYG 367
Query: 212 REGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKN-CIILNDKLGAA 270
++ I +F +M +G +T VSVL AC++ G E GK + E + ++ I + A
Sbjct: 368 KKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYAC 427
Query: 271 LTDMYAKCGYIEEALRVFK-IVLEKNVCTWNSIIGGLAIHG 310
+ D+ + ++EA ++ + + E W S++G IHG
Sbjct: 428 MVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHG 468
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 106/253 (41%), Gaps = 44/253 (17%)
Query: 169 RLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEV 228
+LI C G +K A + Q + + T+ +I + + + + + R + D+G +
Sbjct: 51 QLIQSLCKEGKLKQAIRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQ 110
Query: 229 NELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVF 288
+ ++ ++LG+ ++ A +VF
Sbjct: 111 DPFLATKLIGMYSDLGS-----------------------------------VDYARKVF 135
Query: 289 KIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGL-- 346
++ + WN++ L + G GEE + ++W+M G++ D T VL AC +
Sbjct: 136 DKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTV 195
Query: 347 --IEKGKEIFYNM-RRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWG 403
+ KGKEI ++ RR Y +V LVD+ R +D A V MP+ N V W
Sbjct: 196 NHLMKGKEIHAHLTRRGY--SSHVYIMTTLVDMYARFGCVDYASYVFGGMPVR-NVVSWS 252
Query: 404 SLLTACASADDGA 416
+++ AC + + A
Sbjct: 253 AMI-ACYAKNGKA 264
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 311 bits (796), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 174/439 (39%), Positives = 263/439 (59%), Gaps = 24/439 (5%)
Query: 89 NQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILL---KACGDLR 145
N ++P F ++ + G + + Q++ GLD D F LL +CGDLR
Sbjct: 55 NHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLR 114
Query: 146 QVKGVHSLVVKSKD---FNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMI 202
+ V SKD +NSV+++ Y G + A+ LFD+M E+NV++W+ +I
Sbjct: 115 SAQRVFD-DSGSKDLPAWNSVVNA-------YAKAGLIDDARKLFDEMPERNVISWSCLI 166
Query: 203 NGHVKQKNYREGIDLFRKMR-----DSGVEVNELTLVSVLSACANLGASELGKWVHEFVN 257
NG+V Y+E +DLFR+M+ ++ V NE T+ +VLSAC LGA E GKWVH +++
Sbjct: 167 NGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYID 226
Query: 258 KNCIILNDKLGAALTDMYAKCGYIEEALRVFKIV-LEKNVCTWNSIIGGLAIHGCGEEAV 316
K + ++ LG AL DMYAKCG +E A RVF + +K+V ++++I LA++G +E
Sbjct: 227 KYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECF 286
Query: 317 KMFWQMQMS-GIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVD 375
++F +M S I P+ VT + +L AC H GLI +GK F M ++ + P+++HYGC+VD
Sbjct: 287 QLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVD 346
Query: 376 LLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN 435
L R+ L+ EA I +MPMEP+ ++WGSLL+ D ++ E A++RLI+L+P N
Sbjct: 347 LYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGD---IKTCEGALKRLIELDPMN 403
Query: 436 DGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCS 495
G YVL+SN+YA +W + +R M+ + I K PGCS +E+ VVHEF+VGD S
Sbjct: 404 SGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQES 463
Query: 496 EEIYSMLEYVAISLREECY 514
E IY+ML+ + LRE Y
Sbjct: 464 ERIYAMLDEIMQRLREAGY 482
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 133/320 (41%), Gaps = 47/320 (14%)
Query: 34 LPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN 93
LP HL ++ HAQI+ D T L + S + A VF+ +
Sbjct: 69 LPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSS---CGDLRSAQRVFDDSGS 125
Query: 94 PSTFAFNTVIRGYAEAGLGHRGIQLYTQM----------IGNG----------------- 126
A+N+V+ YA+AGL +L+ +M + NG
Sbjct: 126 KDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREM 185
Query: 127 ---------LDPDSFTYPILLKACGD---LRQVKGVHSLVVKSKDFNSVIHSLTRLITFY 174
+ P+ FT +L ACG L Q K VH+ + K ++ T LI Y
Sbjct: 186 QLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLG-TALIDMY 244
Query: 175 CNFGDVKSAQLLFDQM-TEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDS-GVEVNELT 232
G ++ A+ +F+ + ++K+V ++AMI E LF +M S + N +T
Sbjct: 245 AKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVT 304
Query: 233 LVSVLSACANLGASELGK-WVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALR-VFKI 290
V +L AC + G GK + + + I + + + D+Y + G I+EA + +
Sbjct: 305 FVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASM 364
Query: 291 VLEKNVCTWNSIIGGLAIHG 310
+E +V W S++ G + G
Sbjct: 365 PMEPDVLIWGSLLSGSRMLG 384
>sp|P0C8Q7|PP369_ARATH Pentatricopeptide repeat-containing protein At5g08305
OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1
Length = 534
Score = 309 bits (792), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 174/504 (34%), Positives = 288/504 (57%), Gaps = 41/504 (8%)
Query: 36 LLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPS 95
L +C + + ++H +I +Q +L +S + YA+ +++ +P
Sbjct: 14 LRHQCKSMSELYKIHTLLITLGLSEEEPFVSQTLSF-SALSSSGDVDYAYKFLSKLSDPP 72
Query: 96 TFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDL--RQVKG-VHS 152
+ +N VIRG++ + + I +Y QM+ GL PD TYP L+K+ L R++ G +H
Sbjct: 73 NYGWNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHC 132
Query: 153 LVVKS--------------------------KDFNSVIH----SLTRLITFYCNFGDVKS 182
VVKS K F+ + H + ++ Y GDV S
Sbjct: 133 SVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVS 192
Query: 183 AQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKM-RDSGVEVNELTLVSVLSACA 241
A+L+FD+M+E++VVTW++MI+G+VK+ Y + +++F +M R + NE+T+VSV+ ACA
Sbjct: 193 ARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACA 252
Query: 242 NLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVF--KIVLEKNVCTW 299
+LGA GK VH ++ + L L +L DMYAKCG I +A VF V E + W
Sbjct: 253 HLGALNRGKTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMW 312
Query: 300 NSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRR 359
N+IIGGLA HG E++++F +M+ S I PD++T + +L ACSH GL+++ F +++
Sbjct: 313 NAIIGGLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACSHGGLVKEAWHFFKSLK- 371
Query: 360 DYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVE 419
+ EP +HY C+VD+L RA L+ +A++ I MP++P + G+LL C + N+E
Sbjct: 372 ESGAEPKSEHYACMVDVLSRAGLVKDAHDFISEMPIKPTGSMLGALLNGCI---NHGNLE 428
Query: 420 LAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEIN 479
LAE ++LI+L+P NDG YV ++N+YA Q+ A MR M+++ + K G S+++++
Sbjct: 429 LAETVGKKLIELQPHNDGRYVGLANVYAINKQFRAARSMREAMEKKGVKKIAGHSILDLD 488
Query: 480 DVVHEFMVGDGRHPCSEEIYSMLE 503
H F+ D H S++IY++L+
Sbjct: 489 GTRHRFIAHDKTHFHSDKIYAVLQ 512
>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300
OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1
Length = 857
Score = 309 bits (791), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 170/485 (35%), Positives = 278/485 (57%), Gaps = 11/485 (2%)
Query: 34 LPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN 93
LP + K +L KQ+H I++ S ++ + LI++ ++ A +F+Q +
Sbjct: 347 LPSVSKFENLEYCKQIHCYIMRHSI---SLDIFLTSALIDAYFKCRGVSMAQNIFSQCNS 403
Query: 94 PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVK---GV 150
F +I GY GL ++++ ++ + P+ T +L G L +K +
Sbjct: 404 VDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGREL 463
Query: 151 HSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKN 210
H ++K K F++ + +I Y G + A +F++++++++V+W +MI + N
Sbjct: 464 HGFIIK-KGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDN 522
Query: 211 YREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAA 270
ID+FR+M SG+ + +++ + LSACANL + GK +H F+ K+ + + +
Sbjct: 523 PSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSEST 582
Query: 271 LTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQM-QMSGIKP 329
L DMYAKCG ++ A+ VFK + EKN+ +WNSII HG ++++ +F +M + SGI+P
Sbjct: 583 LIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRP 642
Query: 330 DDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEV 389
D +T + ++++C H G +++G F +M DY ++P +HY C+VDL RA L EAYE
Sbjct: 643 DQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYET 702
Query: 390 IRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAK 449
+++MP P+A +WG+LL AC NVELAE+A +L+ L+P N G YVL+SN +A
Sbjct: 703 VKSMPFPPDAGVWGTLLGACRLHK---NVELAEVASSKLMDLDPSNSGYYVLISNAHANA 759
Query: 450 AQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISL 509
+W+ K+R LMKER + K PG S IEIN H F+ GD HP S IYS+L + L
Sbjct: 760 REWESVTKVRSLMKEREVQKIPGYSWIEINKRTHLFVSGDVNHPESSHIYSLLNSLLGEL 819
Query: 510 REECY 514
R E Y
Sbjct: 820 RLEGY 824
Score = 149 bits (377), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 110/387 (28%), Positives = 183/387 (47%), Gaps = 31/387 (8%)
Query: 36 LLQKCTH---LVQFKQVHAQIIKASFDNRTISDTQLAKLIE---SLVNSSQIAYAHLVFN 89
LLQ C++ L Q KQVHA +I S + +D ++ + S + ++ Y +
Sbjct: 41 LLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRR 100
Query: 90 QIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKG 149
I P +N++I + GL ++ + Y +M+ G+ PD T+P L+KAC L+ KG
Sbjct: 101 SSIRP----WNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKG 156
Query: 150 VHSL--VVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVK 207
+ L V S + + LI Y +G + LFD++ +K+ V W M+NG+ K
Sbjct: 157 IDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAK 216
Query: 208 QKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKL 267
I F MR + N +T VLS CA+ +LG +H V + + +
Sbjct: 217 CGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSI 276
Query: 268 GAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGI 327
+L MY+KCG ++A ++F+++ + TWN +I G G EE++ F++M SG+
Sbjct: 277 KNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGV 336
Query: 328 KPDDVTLIAVLTACSHAGLIEKGKEIF-YNMRRDYKVEPNVKHYGCLVDLLCRARLLDEA 386
PD +T ++L + S +E K+I Y MR +D+ + L+D A
Sbjct: 337 LPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSIS-----------LDIFLTSALID-A 384
Query: 387 YEVIRNMPMEPNAVLWGSLLTACASAD 413
Y R + M N + + C S D
Sbjct: 385 YFKCRGVSMAQN------IFSQCNSVD 405
Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 95/385 (24%), Positives = 188/385 (48%), Gaps = 12/385 (3%)
Query: 36 LLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPS 95
L++ C L FK + S ++ + LI++ + +I +F++++
Sbjct: 144 LVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKD 203
Query: 96 TFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVK-GV--HS 152
+N ++ GYA+ G I+ ++ M + + P++ T+ +L C + GV H
Sbjct: 204 CVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHG 263
Query: 153 LVVKSK-DFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNY 211
LVV S DF I + L++ Y G A LF M+ + VTW MI+G+V+
Sbjct: 264 LVVVSGVDFEGSIKN--SLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLM 321
Query: 212 REGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAAL 271
E + F +M SGV + +T S+L + + E K +H ++ ++ I L+ L +AL
Sbjct: 322 EESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSAL 381
Query: 272 TDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDD 331
D Y KC + A +F +V + ++I G +G ++++MF + I P++
Sbjct: 382 IDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNE 441
Query: 332 VTLIAVLTACSHAGLIEKGKEIF-YNMRRDYKVEPNVKHYGC-LVDLLCRARLLDEAYEV 389
+TL+++L ++ G+E+ + +++ + N+ GC ++D+ + ++ AYE+
Sbjct: 442 ITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNI---GCAVIDMYAKCGRMNLAYEI 498
Query: 390 IRNMPMEPNAVLWGSLLTACASADD 414
+ + + V W S++T CA +D+
Sbjct: 499 FERLS-KRDIVSWNSMITRCAQSDN 522
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 308 bits (790), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 179/504 (35%), Positives = 275/504 (54%), Gaps = 41/504 (8%)
Query: 37 LQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPST 96
L C +L Q KQ+H +++ D T+L + + L YA V + +
Sbjct: 56 LDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKL-GVPMDPYARRVIEPVQFRNP 114
Query: 97 FAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACG---DLRQVKGVHSL 153
F + VIRGYA G I +Y M + P SFT+ LLKACG DL + H+
Sbjct: 115 FLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQ 174
Query: 154 VVKSKDF------NSVIH------------------------SLTRLITFYCNFGDVKSA 183
+ + F N++I S T LI Y G+++ A
Sbjct: 175 TFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECA 234
Query: 184 QLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANL 243
LF+ + K++V WTAM+ G + +E ++ F +M SG+ +E+T+ +SACA L
Sbjct: 235 AELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQL 294
Query: 244 GASELGKWVHEFVNKNCIILNDK--LGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNS 301
GAS+ + K+ +D +G+AL DMY+KCG +EEA+ VF + KNV T++S
Sbjct: 295 GASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSS 354
Query: 302 IIGGLAIHGCGEEAVKMF-WQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRD 360
+I GLA HG +EA+ +F + + + IKP+ VT + L ACSH+GL+++G+++F +M +
Sbjct: 355 MILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQT 414
Query: 361 YKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVEL 420
+ V+P HY C+VDLL R L EA E+I+ M +EP+ +WG+LL AC + N E+
Sbjct: 415 FGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHN---NPEI 471
Query: 421 AEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCS-VIEIN 479
AEIA E L +LEP GNY+L+SN+YA+ W ++R+L+KE+ + K P S V++ N
Sbjct: 472 AEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKN 531
Query: 480 DVVHEFMVGDGRHPCSEEIYSMLE 503
+H+F G+ HP S +I LE
Sbjct: 532 GQMHKFFPGNLNHPMSNKIQDKLE 555
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 306 bits (785), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 163/473 (34%), Positives = 266/473 (56%), Gaps = 11/473 (2%)
Query: 47 KQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGY 106
+ VH+ +KA F D L++ + A VF ++ + S ++ ++I GY
Sbjct: 316 RAVHSIGVKACFSRE---DRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGY 372
Query: 107 AEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLR---QVKGVHSLVVKSKDFNSV 163
A GL ++L+ +M G+ PD +T +L C R + K VH + K D
Sbjct: 373 AREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWI-KENDLGFD 431
Query: 164 IHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKM-R 222
I L+ Y G ++ A+L+F +M K++++W +I G+ K E + LF +
Sbjct: 432 IFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLE 491
Query: 223 DSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIE 282
+ +E T+ VL ACA+L A + G+ +H ++ +N + + +L DMYAKCG +
Sbjct: 492 EKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALL 551
Query: 283 EALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACS 342
A +F + K++ +W +I G +HG G+EA+ +F QM+ +GI+ D+++ +++L ACS
Sbjct: 552 LAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACS 611
Query: 343 HAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLW 402
H+GL+++G F MR + K+EP V+HY C+VD+L R L +AY I NMP+ P+A +W
Sbjct: 612 HSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIW 671
Query: 403 GSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLM 462
G+LL C D V+LAE E++ +LEP N G YVLM+NIYA +W+ ++R+ +
Sbjct: 672 GALLCGCRIHHD---VKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRI 728
Query: 463 KERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLREECYA 515
+R + KNPGCS IEI V+ F+ GD +P +E I + L V + EE Y+
Sbjct: 729 GQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYS 781
Score = 171 bits (434), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 108/353 (30%), Positives = 195/353 (55%), Gaps = 11/353 (3%)
Query: 60 NRTISDTQL-AKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQL 118
N + D+ L +KL N + A VF+++ +N ++ A++G I L
Sbjct: 123 NGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGL 182
Query: 119 YTQMIGNGLDPDSFTYPILLKACGDLRQVKG---VHSLVVKSK--DFNSVIHSLTRLITF 173
+ +M+ +G++ DS+T+ + K+ LR V G +H ++KS + NSV +SL + F
Sbjct: 183 FKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSL---VAF 239
Query: 174 YCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTL 233
Y V SA+ +FD+MTE++V++W ++ING+V +G+ +F +M SG+E++ T+
Sbjct: 240 YLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATI 299
Query: 234 VSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE 293
VSV + CA+ LG+ VH K C D+ L DMY+KCG ++ A VF+ + +
Sbjct: 300 VSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSD 359
Query: 294 KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEI 353
++V ++ S+I G A G EAVK+F +M+ GI PD T+ AVL C+ L+++GK +
Sbjct: 360 RSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRV 419
Query: 354 FYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLL 406
+ ++ + ++ L+D+ + + EA V M ++ + + W +++
Sbjct: 420 -HEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVK-DIISWNTII 470
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 92/186 (49%), Gaps = 4/186 (2%)
Query: 227 EVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALR 286
+++ TL SVL CA+ + + GK V F+ N +++ LG+ L+ MY CG ++EA R
Sbjct: 91 DIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASR 150
Query: 287 VFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGL 346
VF V + WN ++ LA G ++ +F +M SG++ D T V + S
Sbjct: 151 VFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRS 210
Query: 347 IEKGKEIF-YNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSL 405
+ G+++ + ++ + +V + LV + + +D A +V M E + + W S+
Sbjct: 211 VHGGEQLHGFILKSGFGERNSVGN--SLVAFYLKNQRVDSARKVFDEMT-ERDVISWNSI 267
Query: 406 LTACAS 411
+ S
Sbjct: 268 INGYVS 273
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 306 bits (785), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 156/425 (36%), Positives = 257/425 (60%), Gaps = 10/425 (2%)
Query: 71 LIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPD 130
LI V + + AH +F+Q+ + ++ T+I Y++ + + ++L M+ + + P+
Sbjct: 102 LINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPN 161
Query: 131 SFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQM 190
+TY +L++C + V+ +H ++K + S + + LI + G+ + A +FD+M
Sbjct: 162 VYTYSSVLRSCNGMSDVRMLHCGIIK-EGLESDVFVRSALIDVFAKLGEPEDALSVFDEM 220
Query: 191 TEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGK 250
+ + W ++I G + ++LF++M+ +G + TL SVL AC L ELG
Sbjct: 221 VTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGM 280
Query: 251 WVHEFVNK--NCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAI 308
H + K +ILN+ AL DMY KCG +E+ALRVF + E++V TW+++I GLA
Sbjct: 281 QAHVHIVKYDQDLILNN----ALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQ 336
Query: 309 HGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVK 368
+G +EA+K+F +M+ SG KP+ +T++ VL ACSHAGL+E G F +M++ Y ++P +
Sbjct: 337 NGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVRE 396
Query: 369 HYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERL 428
HYGC++DLL +A LD+A +++ M EP+AV W +LL AC N+ LAE A +++
Sbjct: 397 HYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQ---RNMVLAEYAAKKV 453
Query: 429 IKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVG 488
I L+P + G Y L+SNIYA +WD ++R M++R I K PGCS IE+N +H F++G
Sbjct: 454 IALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIG 513
Query: 489 DGRHP 493
D HP
Sbjct: 514 DNSHP 518
Score = 125 bits (315), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 157/300 (52%), Gaps = 11/300 (3%)
Query: 114 RGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNS---VIHSLTRL 170
R ++ + +GL DS TY L+K C R V +L+ + FN ++ + L
Sbjct: 44 RAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHE-GNLICRHLYFNGHRPMMFLVNVL 102
Query: 171 ITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNE 230
I Y F + A LFDQM ++NV++WT MI+ + K K +++ ++L M V N
Sbjct: 103 INMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNV 162
Query: 231 LTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKI 290
T SVL +C G S++ + +H + K + + + +AL D++AK G E+AL VF
Sbjct: 163 YTYSSVLRSCN--GMSDV-RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDE 219
Query: 291 VLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKG 350
++ + WNSIIGG A + + A+++F +M+ +G + TL +VL AC+ L+E G
Sbjct: 220 MVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG 279
Query: 351 KEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACA 410
+ ++ K + ++ LVD+ C+ L++A V M E + + W ++++ A
Sbjct: 280 MQAHVHI---VKYDQDLILNNALVDMYCKCGSLEDALRVFNQMK-ERDVITWSTMISGLA 335
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 306 bits (783), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 173/475 (36%), Positives = 271/475 (57%), Gaps = 12/475 (2%)
Query: 45 QFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIR 104
Q K++HA +++ F + ++ L +L+E+LV + YA VF+++ P F +NT+ +
Sbjct: 26 QLKKIHAIVLRTGFSEK---NSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFK 82
Query: 105 GYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKAC---GDLRQVKGVHSLVVKSKDFN 161
GY L + LY +M G+ PD FTYP ++KA GD +H+ VVK F
Sbjct: 83 GYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKY-GFG 141
Query: 162 SVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKM 221
+ T L+ Y FG++ SA+ LF+ M K++V W A + V+ N ++ F KM
Sbjct: 142 CLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKM 201
Query: 222 RDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYI 281
V+ + T+VS+LSAC LG+ E+G+ +++ K I N + A DM+ KCG
Sbjct: 202 CADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNT 261
Query: 282 EEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTAC 341
E A +F+ + ++NV +W+++I G A++G EA+ +F MQ G++P+ VT + VL+AC
Sbjct: 262 EAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSAC 321
Query: 342 SHAGLIEKGKEIFYNMRR--DYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNA 399
SHAGL+ +GK F M + D +EP +HY C+VDLL R+ LL+EAYE I+ MP+EP+
Sbjct: 322 SHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDT 381
Query: 400 VLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMR 459
+WG+LL ACA D + L + + L++ P +VL+SNIYAA +WD K+R
Sbjct: 382 GIWGALLGACAVHRD---MILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVR 438
Query: 460 RLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLREECY 514
M++ K S +E +H F GD HP S+ IY L+ + +R+ Y
Sbjct: 439 SKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGY 493
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 305 bits (782), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 177/500 (35%), Positives = 284/500 (56%), Gaps = 29/500 (5%)
Query: 36 LLQKCTHLVQF---KQVHAQIIK-ASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQI 91
+L C+HL K++HA +K S D + + L ++ N Q+ VF+ +
Sbjct: 308 VLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSAL---VDMYCNCKQVLSGRRVFDGM 364
Query: 92 INPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGN-GLDPDSFTYPILLKAC---GDLRQV 147
+ +N +I GY++ + L+ M + GL +S T ++ AC G +
Sbjct: 365 FDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRK 424
Query: 148 KGVHSLVVKSK-DFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHV 206
+ +H VVK D + + + L+ Y G + A +F +M ++++VTW MI G+V
Sbjct: 425 EAIHGFVVKRGLDRDRFVQN--TLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYV 482
Query: 207 KQKNYREGIDLFRKMRD-----------SGVEVNELTLVSVLSACANLGASELGKWVHEF 255
+++ + + L KM++ ++ N +TL+++L +CA L A GK +H +
Sbjct: 483 FSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAY 542
Query: 256 VNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEA 315
KN + + +G+AL DMYAKCG ++ + +VF + +KNV TWN II +HG G+EA
Sbjct: 543 AIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEA 602
Query: 316 VKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVD 375
+ + M + G+KP++VT I+V ACSH+G++++G IFY M+ DY VEP+ HY C+VD
Sbjct: 603 IDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVD 662
Query: 376 LLCRARLLDEAYEVIRNMPMEPN-AVLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434
LL RA + EAY+++ MP + N A W SLL A + N+E+ EIA + LI+LEP
Sbjct: 663 LLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHN---NLEIGEIAAQNLIQLEPN 719
Query: 435 NDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPC 494
+YVL++NIY++ WD A ++RR MKE+ + K PGCS IE D VH+F+ GD HP
Sbjct: 720 VASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQ 779
Query: 495 SEEIYSMLEYVAISLREECY 514
SE++ LE + +R+E Y
Sbjct: 780 SEKLSGYLETLWERMRKEGY 799
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 166/338 (49%), Gaps = 22/338 (6%)
Query: 102 VIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQV---KGVHSLVVKSK 158
++R + L + Y MI G+ PD++ +P LLKA DL+ + K +H+ V K
Sbjct: 68 LLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYK-- 125
Query: 159 DFNSVIHSLT---RLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGI 215
F + S+T L+ Y GD + +FD+++E+N V+W ++I+ + + +
Sbjct: 126 -FGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184
Query: 216 DLFRKMRDSGVEVNELTLVSVLSACANLGASE---LGKWVHEFVNK----NCIILNDKLG 268
+ FR M D VE + TLVSV++AC+NL E +GK VH + + N I+N
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIIN---- 240
Query: 269 AALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIK 328
L MY K G + + + +++ TWN+++ L + EA++ +M + G++
Sbjct: 241 -TLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVE 299
Query: 329 PDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYE 388
PD+ T+ +VL ACSH ++ GKE+ ++ ++ N LVD+ C + +
Sbjct: 300 PDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRR 359
Query: 389 VIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAME 426
V M + LW +++ + + L I ME
Sbjct: 360 VFDGM-FDRKIGLWNAMIAGYSQNEHDKEALLLFIGME 396
Score = 132 bits (331), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 93/373 (24%), Positives = 184/373 (49%), Gaps = 20/373 (5%)
Query: 47 KQVHAQIIKASF--DNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIR 104
KQ+HA + K + D+ T+++T L+ + VF++I + ++N++I
Sbjct: 117 KQIHAHVYKFGYGVDSVTVANT----LVNLYRKCGDFGAVYKVFDRISERNQVSWNSLIS 172
Query: 105 GYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKG------VHSLVVKSK 158
++ + M+ ++P SFT ++ AC +L +G VH+ ++
Sbjct: 173 SLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG 232
Query: 159 DFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLF 218
+ NS I + L+ Y G + S+++L +++VTW +++ + + E ++
Sbjct: 233 ELNSFI--INTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYL 290
Query: 219 RKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKN-CIILNDKLGAALTDMYAK 277
R+M GVE +E T+ SVL AC++L GK +H + KN + N +G+AL DMY
Sbjct: 291 REMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCN 350
Query: 278 CGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMS-GIKPDDVTLIA 336
C + RVF + ++ + WN++I G + + +EA+ +F M+ S G+ + T+
Sbjct: 351 CKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAG 410
Query: 337 VLTACSHAGLIEKGKEIF-YNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPM 395
V+ AC +G + + I + ++R + V++ L+D+ R +D A + M
Sbjct: 411 VVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQN--TLMDMYSRLGKIDIAMRIFGKME- 467
Query: 396 EPNAVLWGSLLTA 408
+ + V W +++T
Sbjct: 468 DRDLVTWNTMITG 480
>sp|Q9LYU9|PP378_ARATH Pentatricopeptide repeat-containing protein At5g13270,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H90 PE=2
SV=1
Length = 752
Score = 305 bits (781), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 160/461 (34%), Positives = 257/461 (55%), Gaps = 11/461 (2%)
Query: 47 KQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGY 106
+Q+HA +I+A + T +T + + V + A VF+Q+ A ++ GY
Sbjct: 204 RQIHAHVIRAGLCSNTSIETGIVNM---YVKCGWLVGAKRVFDQMAVKKPVACTGLMVGY 260
Query: 107 AEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQV---KGVHSLVVKSKDFNSV 163
+AG ++L+ ++ G++ DSF + ++LKAC L ++ K +H+ V K S
Sbjct: 261 TQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACASLEELNLGKQIHACVAK-LGLESE 319
Query: 164 IHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRD 223
+ T L+ FY +SA F ++ E N V+W+A+I+G+ + + E + F+ +R
Sbjct: 320 VSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRS 379
Query: 224 SGVEV-NELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIE 282
+ N T S+ AC+ L +G VH K +I + +AL MY+KCG ++
Sbjct: 380 KNASILNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLD 439
Query: 283 EALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACS 342
+A VF+ + ++ W + I G A +G EA+++F +M G+KP+ VT IAVLTACS
Sbjct: 440 DANEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACS 499
Query: 343 HAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLW 402
HAGL+E+GK M R Y V P + HY C++D+ R+ LLDEA + ++NMP EP+A+ W
Sbjct: 500 HAGLVEQGKHCLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEALKFMKNMPFEPDAMSW 559
Query: 403 GSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLM 462
L+ C + N+EL EIA E L +L+P + YVL N+Y +W++A +M +LM
Sbjct: 560 KCFLSGCWTHK---NLELGEIAGEELRQLDPEDTAGYVLPFNLYTWAGKWEEAAEMMKLM 616
Query: 463 KERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLE 503
ER + K CS I+ +H F+VGD HP ++EIY L+
Sbjct: 617 NERMLKKELSCSWIQEKGKIHRFIVGDKHHPQTQEIYEKLK 657
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 109/419 (26%), Positives = 181/419 (43%), Gaps = 45/419 (10%)
Query: 84 AHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGD 143
A +F+++ + + T+I YAE G+ + + L++ M+ +G P S Y LLK+ +
Sbjct: 137 ADKLFDEMSELNAVSRTTMISAYAEQGILDKAVGLFSGMLASGDKPPSSMYTTLLKSLVN 196
Query: 144 LRQV---KGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTA 200
R + + +H+ V+++ S T ++ Y G + A+ +FDQM K V T
Sbjct: 197 PRALDFGRQIHAHVIRA-GLCSNTSIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVACTG 255
Query: 201 MINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNC 260
++ G+ + R+ + LF + GVE + VL ACA+L LGK +H V K
Sbjct: 256 LMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACASLEELNLGKQIHACVAKLG 315
Query: 261 IILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFW 320
+ +G L D Y KC E A R F+ + E N +W++II G EEAVK F
Sbjct: 316 LESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFK 375
Query: 321 QMQMSGIKP-DDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYG--CLVDLL 377
++ + T ++ ACS G ++ + + + YG L+ +
Sbjct: 376 SLRSKNASILNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIG---SQYGESALITMY 432
Query: 378 CRARLLDEAYEVIRNMP----------------------------------MEPNAVLWG 403
+ LD+A EV +M M+PN+V +
Sbjct: 433 SKCGCLDDANEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFI 492
Query: 404 SLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLM 462
++LTAC+ A + M R + P D +Y M +IYA D+A K + M
Sbjct: 493 AVLTACSHAGLVEQGKHCLDTMLRKYNVAPTID-HYDCMIDIYARSGLLDEALKFMKNM 550
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 136/299 (45%), Gaps = 6/299 (2%)
Query: 113 HRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQV---KGVHSLVVKSKDFNSVIHSLTR 169
+ + +M G+ S++Y L +AC +LR + + +H + + SV+
Sbjct: 65 NEAFEFLQEMDKAGVSVSSYSYQCLFEACRELRSLSHGRLLHDRMRMGIENPSVLLQ-NC 123
Query: 170 LITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVN 229
++ YC ++ A LFD+M+E N V+ T MI+ + +Q + + LF M SG +
Sbjct: 124 VLQMYCECRSLEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAVGLFSGMLASGDKPP 183
Query: 230 ELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFK 289
++L + N A + G+ +H V + + N + + +MY KCG++ A RVF
Sbjct: 184 SSMYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFD 243
Query: 290 IVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEK 349
+ K ++ G G +A+K+F + G++ D VL AC+ +
Sbjct: 244 QMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACASLEELNL 303
Query: 350 GKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTA 408
GK+I + + +E V LVD + + A + + EPN V W ++++
Sbjct: 304 GKQIHACVAK-LGLESEVSVGTPLVDFYIKCSSFESACRAFQEI-REPNDVSWSAIISG 360
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 71/153 (46%)
Query: 207 KQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDK 266
K + E + ++M +GV V+ + + AC L + G+ +H+ + +
Sbjct: 60 KHRKLNEAFEFLQEMDKAGVSVSSYSYQCLFEACRELRSLSHGRLLHDRMRMGIENPSVL 119
Query: 267 LGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSG 326
L + MY +C +E+A ++F + E N + ++I A G ++AV +F M SG
Sbjct: 120 LQNCVLQMYCECRSLEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAVGLFSGMLASG 179
Query: 327 IKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRR 359
KP +L + + ++ G++I ++ R
Sbjct: 180 DKPPSSMYTTLLKSLVNPRALDFGRQIHAHVIR 212
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 305 bits (780), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 164/473 (34%), Positives = 275/473 (58%), Gaps = 14/473 (2%)
Query: 47 KQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGY 106
K++H +++ FD+ T L ++ + A +F+ ++ + ++N++I Y
Sbjct: 256 KEIHGYAMRSGFDSLVNISTAL---VDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAY 312
Query: 107 AEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKAC---GDLRQVKGVHSLVVK-SKDFN- 161
+ + ++ +M+ G+ P + L AC GDL + + +H L V+ D N
Sbjct: 313 VQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNV 372
Query: 162 SVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKM 221
SV++SL I+ YC +V +A +F ++ + +V+W AMI G + + ++ F +M
Sbjct: 373 SVVNSL---ISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQM 429
Query: 222 RDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYI 281
R V+ + T VSV++A A L + KW+H V ++C+ N + AL DMYAKCG I
Sbjct: 430 RSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAI 489
Query: 282 EEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTAC 341
A +F ++ E++V TWN++I G HG G+ A+++F +MQ IKP+ VT ++V++AC
Sbjct: 490 MIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISAC 549
Query: 342 SHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVL 401
SH+GL+E G + FY M+ +Y +E ++ HYG +VDLL RA L+EA++ I MP++P +
Sbjct: 550 SHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNV 609
Query: 402 WGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRL 461
+G++L AC NV AE A ERL +L P + G +VL++NIY A + W+ G++R
Sbjct: 610 YGAMLGACQIHK---NVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVS 666
Query: 462 MKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLREECY 514
M + + K PGCS++EI + VH F G HP S++IY+ LE + ++E Y
Sbjct: 667 MLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGY 719
Score = 169 bits (429), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 109/396 (27%), Positives = 205/396 (51%), Gaps = 15/396 (3%)
Query: 1 MLKQLVPNSQLTHFTNSANSHKN----SNTATKSHHHLP---LLQKCTHLVQFKQVHAQI 53
M QLV S + N + H++ N + + P LL++C+ L + +Q+ +
Sbjct: 1 MSSQLVQFSTVPQIPNPPSRHRHFLSERNYIPANVYEHPAALLLERCSSLKELRQILPLV 60
Query: 54 IKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGH 113
K T+L L + A VF I + ++T+++G+A+
Sbjct: 61 FKNGLYQEHFFQTKLVSL---FCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLD 117
Query: 114 RGIQLYTQMIGNGLDPDSFTYPILLKACGD---LRQVKGVHSLVVKSKDFNSVIHSLTRL 170
+ +Q + +M + ++P + + LLK CGD LR K +H L+VKS F+ + ++T L
Sbjct: 118 KALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKS-GFSLDLFAMTGL 176
Query: 171 ITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNE 230
Y V A+ +FD+M E+++V+W ++ G+ + R +++ + M + ++ +
Sbjct: 177 ENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSF 236
Query: 231 LTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKI 290
+T+VSVL A + L +GK +H + ++ + AL DMYAKCG +E A ++F
Sbjct: 237 ITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDG 296
Query: 291 VLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKG 350
+LE+NV +WNS+I + +EA+ +F +M G+KP DV+++ L AC+ G +E+G
Sbjct: 297 MLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERG 356
Query: 351 KEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEA 386
+ I + + + ++ NV L+ + C+ + +D A
Sbjct: 357 RFI-HKLSVELGLDRNVSVVNSLISMYCKCKEVDTA 391
>sp|Q9LJJ1|PP259_ARATH Putative pentatricopeptide repeat-containing protein At3g28640
OS=Arabidopsis thaliana GN=PCMP-E79 PE=3 SV=1
Length = 504
Score = 303 bits (777), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 169/483 (34%), Positives = 279/483 (57%), Gaps = 16/483 (3%)
Query: 38 QKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVN-SSQIAYAHLVFNQIINPST 96
Q+C + Q K H+ I T + ++L L N + YA +F+ I P++
Sbjct: 19 QRCNTVKQIKSTHSLFIIHGLHRNTYAISKLLTAFLHLPNLNKHFHYASSIFDSIEIPNS 78
Query: 97 FAFNTVIRGYAEAGLGHRGIQLYTQMIGN---GLDPDSFTYPILLKACGD---LRQVKGV 150
F ++T+IR + + H G++ + M+ + P T+ L+ AC K +
Sbjct: 79 FVYDTMIRICSRSSQPHLGLRYFLLMVKEEEEDIAPSYLTFHFLIVACLKACFFSVGKQI 138
Query: 151 HSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKN 210
H VVK+ F S H T ++ Y + A+ +FD++ + +VV W ++NG+V+
Sbjct: 139 HCWVVKNGVFLSDSHVQTGVLRIYVEDKLLLDARKVFDEIPQPDVVKWDVLMNGYVRCGL 198
Query: 211 YREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDK-LGA 269
EG+++FR+M G+E +E ++ + L+ACA +GA GKW+HEFV K I +D +G
Sbjct: 199 GSEGLEVFREMLVKGLEPDEFSVTTALTACAQVGALAQGKWIHEFVKKKSWIESDVFVGT 258
Query: 270 ALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMS-GIK 328
AL DMYAKCG IE A+ VFK + +NV +W ++IGG A +G ++A+ +++ GIK
Sbjct: 259 ALVDMYAKCGCIETAVEVFKKLTRRNVFSWAALIGGYAAYGYAKKAMTCLERLEREDGIK 318
Query: 329 PDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYE 388
PD V L+ VL AC+H G +E+G+ + NM Y++ P +HY C+VDL+CRA LD+A
Sbjct: 319 PDSVVLLGVLAACAHGGFLEEGRSMLENMEARYEITPKHEHYSCIVDLMCRAGRLDDALN 378
Query: 389 VIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN----DGNYVLMSN 444
+I MPM+P A +WG+LL C + NVEL E+A++ L+ LE N + V +SN
Sbjct: 379 LIEKMPMKPLASVWGALLNGCRTHK---NVELGELAVKNLLDLEKGNVEEEEAALVQLSN 435
Query: 445 IYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEY 504
IY + + +A K+R ++++R + K PG SV+E++ V +F+ GD HP +I++++
Sbjct: 436 IYFSVQRNPEASKVRGMIEQRGVRKTPGWSVLEVDGNVTKFVSGDVSHPNLLQIHTVIHL 495
Query: 505 VAI 507
+++
Sbjct: 496 LSV 498
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 303 bits (777), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 181/520 (34%), Positives = 280/520 (53%), Gaps = 19/520 (3%)
Query: 2 LKQLVPNSQLTHFTNSANSHKNSNTATKSHHHLPLLQKCTHL---VQFKQVHAQIIKASF 58
L++L S + + S S ++ + +L+ C L V +Q+H + K
Sbjct: 25 LRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGC 84
Query: 59 DNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPST----FAFNTVIRGYAEAGLGHR 114
+ L LI +A A VF + NP + +N +I GY
Sbjct: 85 ETEPFV---LTALISMYCKCGLVADARKVFEE--NPQSSQLSVCYNALISGYTANSKVTD 139
Query: 115 GIQLYTQMIGNGLDPDSFTYPILLKACGDLRQV---KGVHSLVVKSKDFNSVIHSLTRLI 171
++ +M G+ DS T L+ C + + +H VK +S + L I
Sbjct: 140 AAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKG-GLDSEVAVLNSFI 198
Query: 172 TFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNEL 231
T Y G V++ + LFD+M K ++TW A+I+G+ + + ++L+ +M+ SGV +
Sbjct: 199 TMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPF 258
Query: 232 TLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIV 291
TLVSVLS+CA+LGA ++G V + V N + N + A MYA+CG + +A VF I+
Sbjct: 259 TLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIM 318
Query: 292 LEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGK 351
K++ +W ++IG +HG GE + +F M GI+PD + VL+ACSH+GL +KG
Sbjct: 319 PVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGL 378
Query: 352 EIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACAS 411
E+F M+R+YK+EP +HY CLVDLL RA LDEA E I +MP+EP+ +WG+LL AC
Sbjct: 379 ELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKI 438
Query: 412 ADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNP 471
NV++AE+A ++I+ EP N G YVLMSNIY+ + ++R +M+ER K P
Sbjct: 439 HK---NVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKP 495
Query: 472 GCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLRE 511
G S +E VH F+ GD H +EE++ ML+ + S+ E
Sbjct: 496 GYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDELETSVME 535
Score = 138 bits (348), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 108/385 (28%), Positives = 189/385 (49%), Gaps = 23/385 (5%)
Query: 99 FNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLR-QVKG--VHSLVV 155
+N +R A L I LY M+ +G PD+F++P +LK+C L V G +H V
Sbjct: 21 WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80
Query: 156 KSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKN--VVTWTAMINGHVKQKNYRE 213
K + LT LI+ YC G V A+ +F++ + + V + A+I+G+ +
Sbjct: 81 KG-GCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTD 139
Query: 214 GIDLFRKMRDSGVEVNELTLVSVLSACAN-----LGASELGKWVHEFVNKNCIILNDKLG 268
+FR+M+++GV V+ +T++ ++ C LG S G+ V ++ +LN
Sbjct: 140 AAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLN---- 195
Query: 269 AALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIK 328
+ MY KCG +E R+F + K + TWN++I G + +G + ++++ QM+ SG+
Sbjct: 196 -SFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVC 254
Query: 329 PDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYE 388
PD TL++VL++C+H G + G E+ + + V PNV + + R L +A
Sbjct: 255 PDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFV-PNVFVSNASISMYARCGNLAKARA 313
Query: 389 VIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAA 448
V MP++ + V W +++ G E+ + + +IK DG +M +
Sbjct: 314 VFDIMPVK-SLVSWTAMIGCYGMHGMG---EIGLMLFDDMIKRGIRPDGAVFVMVLSACS 369
Query: 449 KAQWDDAG-KMRRLMKERNIVKNPG 472
+ D G ++ R MK R PG
Sbjct: 370 HSGLTDKGLELFRAMK-REYKLEPG 393
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 303 bits (776), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 169/505 (33%), Positives = 274/505 (54%), Gaps = 14/505 (2%)
Query: 16 NSANSHKNSNTATKSHHHLPLLQKCT---HLVQFKQVHAQIIKASFDNRTISDTQLAKLI 72
S+N + S + LL+KCT L+Q + VHA I+++ F + + L +
Sbjct: 46 TSSNDLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNM- 104
Query: 73 ESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSF 132
+ A VF ++ + T+I GY++ + + QM+ G P+ F
Sbjct: 105 --YAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEF 162
Query: 133 TYPILLKACGDLRQV---KGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQ 189
T ++KA R+ +H VK F+S +H + L+ Y +G + AQL+FD
Sbjct: 163 TLSSVIKAAAAERRGCCGHQLHGFCVKC-GFDSNVHVGSALLDLYTRYGLMDDAQLVFDA 221
Query: 190 MTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELG 249
+ +N V+W A+I GH ++ + ++LF+ M G + + S+ AC++ G E G
Sbjct: 222 LESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQG 281
Query: 250 KWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIH 309
KWVH ++ K+ L G L DMYAK G I +A ++F + +++V +WNS++ A H
Sbjct: 282 KWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQH 341
Query: 310 GCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKH 369
G G+EAV F +M+ GI+P++++ ++VLTACSH+GL+++G + M++D + P H
Sbjct: 342 GFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWH 400
Query: 370 YGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLI 429
Y +VDLL RA L+ A I MP+EP A +W +LL AC N EL A E +
Sbjct: 401 YVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMH---KNTELGAYAAEHVF 457
Query: 430 KLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGD 489
+L+P + G +V++ NIYA+ +W+DA ++R+ MKE + K P CS +EI + +H F+ D
Sbjct: 458 ELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVAND 517
Query: 490 GRHPCSEEIYSMLEYVAISLREECY 514
RHP EEI E V ++E Y
Sbjct: 518 ERHPQREEIARKWEEVLAKIKELGY 542
>sp|Q9SZK1|PP355_ARATH Pentatricopeptide repeat-containing protein At4g38010
OS=Arabidopsis thaliana GN=PCMP-E45 PE=3 SV=1
Length = 559
Score = 303 bits (776), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 167/451 (37%), Positives = 265/451 (58%), Gaps = 17/451 (3%)
Query: 35 PLLQKC---THLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQI 91
P+ + C + + + KQ+H + K F + L S A VF ++
Sbjct: 111 PVFKACGKFSGIREGKQIHGIVTKMGFYDDIYVQNSLVHFYGVCGESRN---ACKVFGEM 167
Query: 92 INPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGD---LRQVK 148
++ +I G+ GL + +++M ++P+ TY +L + G L K
Sbjct: 168 PVRDVVSWTGIITGFTRTGLYKEALDTFSKM---DVEPNLATYVCVLVSSGRVGCLSLGK 224
Query: 149 GVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQ 208
G+H L++K S + + LI Y + A +F ++ +K+ V+W +MI+G V
Sbjct: 225 GIHGLILKRASLIS-LETGNALIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGLVHC 283
Query: 209 KNYREGIDLFRKMR-DSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKL 267
+ +E IDLF M+ SG++ + L SVLSACA+LGA + G+WVHE++ I + +
Sbjct: 284 ERSKEAIDLFSLMQTSSGIKPDGHILTSVLSACASLGAVDHGRWVHEYILTAGIKWDTHI 343
Query: 268 GAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGI 327
G A+ DMYAKCGYIE AL +F + KNV TWN+++GGLAIHG G E+++ F +M G
Sbjct: 344 GTAIVDMYAKCGYIETALEIFNGIRSKNVFTWNALLGGLAIHGHGLESLRYFEEMVKLGF 403
Query: 328 KPDDVTLIAVLTACSHAGLIEKGKEIFYNMR-RDYKVEPNVKHYGCLVDLLCRARLLDEA 386
KP+ VT +A L AC H GL+++G+ F+ M+ R+Y + P ++HYGC++DLLCRA LLDEA
Sbjct: 404 KPNLVTFLAALNACCHTGLVDEGRRYFHKMKSREYNLFPKLEHYGCMIDLLCRAGLLDEA 463
Query: 387 YEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIY 446
E+++ MP++P+ + G++L+AC + G +EL + ++ + +E + G YVL+SNI+
Sbjct: 464 LELVKAMPVKPDVRICGAILSAC--KNRGTLMELPKEILDSFLDIEFEDSGVYVLLSNIF 521
Query: 447 AAKAQWDDAGKMRRLMKERNIVKNPGCSVIE 477
AA +WDD ++RRLMK + I K PG S IE
Sbjct: 522 AANRRWDDVARIRRLMKVKGISKVPGSSYIE 552
Score = 185 bits (469), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 125/387 (32%), Positives = 201/387 (51%), Gaps = 23/387 (5%)
Query: 34 LPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIA-YAHLVFNQII 92
L L+ +C+ L FKQ+ Q+I D + K++ L S+ A Y+ ++ + I
Sbjct: 10 LELISRCSSLRVFKQIQTQLITRDLLR---DDLIINKVVTFLGKSADFASYSSVILHSIR 66
Query: 93 NP-STFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGD---LRQVK 148
+ S+F++NT++ YA I Y + NG PD FT+P + KACG +R+ K
Sbjct: 67 SVLSSFSYNTLLSSYAVCDKPRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREGK 126
Query: 149 GVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQ 208
+H +V K F I+ L+ FY G+ ++A +F +M ++VV+WT +I G +
Sbjct: 127 QIHGIVTK-MGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTRT 185
Query: 209 KNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLG 268
Y+E +D F KM VE N T V VL + +G LGK +H + K +++ + G
Sbjct: 186 GLYKEALDTFSKM---DVEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLETG 242
Query: 269 AALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQM-SGI 327
AL DMY KC + +A+RVF + +K+ +WNS+I GL +EA+ +F MQ SGI
Sbjct: 243 NALIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGI 302
Query: 328 KPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVK---HYG-CLVDLLCRARLL 383
KPD L +VL+AC+ G ++ G+ + +Y + +K H G +VD+ + +
Sbjct: 303 KPDGHILTSVLSACASLGAVDHGRWV-----HEYILTAGIKWDTHIGTAIVDMYAKCGYI 357
Query: 384 DEAYEVIRNMPMEPNAVLWGSLLTACA 410
+ A E+ N N W +LL A
Sbjct: 358 ETALEIF-NGIRSKNVFTWNALLGGLA 383
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 303 bits (776), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 157/418 (37%), Positives = 256/418 (61%), Gaps = 11/418 (2%)
Query: 87 VFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQ 146
+F ++ T ++N+++ G +AG +L+ +M D ++ +L R+
Sbjct: 176 LFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQR----DLISWNTMLDGYARCRE 231
Query: 147 VKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMT--EKNVVTWTAMING 204
+ L K + N+V S + ++ Y GD++ A+++FD+M KNVVTWT +I G
Sbjct: 232 MSKAFELFEKMPERNTV--SWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAG 289
Query: 205 HVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILN 264
+ ++ +E L +M SG++ + ++S+L+AC G LG +H + ++ + N
Sbjct: 290 YAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSN 349
Query: 265 DKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQM 324
+ AL DMYAKCG +++A VF + +K++ +WN+++ GL +HG G+EA+++F +M+
Sbjct: 350 AYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRR 409
Query: 325 SGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLD 384
GI+PD VT IAVL +C+HAGLI++G + FY+M + Y + P V+HYGCLVDLL R L
Sbjct: 410 EGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLK 469
Query: 385 EAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSN 444
EA +V++ MPMEPN V+WG+LL AC ++ V++A+ ++ L+KL+P + GNY L+SN
Sbjct: 470 EAIKVVQTMPMEPNVVIWGALLGACRMHNE---VDIAKEVLDNLVKLDPCDPGNYSLLSN 526
Query: 445 IYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSML 502
IYAA W+ +R MK + K G S +E+ D +HEF V D HP S++IY ML
Sbjct: 527 IYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDGIHEFTVFDKSHPKSDQIYQML 584
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 118/378 (31%), Positives = 196/378 (51%), Gaps = 23/378 (6%)
Query: 37 LQKCTHLVQFKQVHAQIIKASFDNRTISDTQLA-KLIESLVNSSQIAYAHLVFNQIINPS 95
L KC +L Q KQ+HAQII+ + D +A KLI +L Q A VFNQ+ P+
Sbjct: 26 LPKCANLNQVKQLHAQIIRRNLHE----DLHIAPKLISALSLCRQTNLAVRVFNQVQEPN 81
Query: 96 TFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGD---LRQVKGVHS 152
N++IR +A+ ++ ++++M GL D+FTYP LLKAC L VK +H+
Sbjct: 82 VHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHN 141
Query: 153 LVVKSKDFNSVIHSLTRLITFYCNFG--DVKSAQLLFDQMTEKNVVTWTAMINGHVKQKN 210
+ K +S I+ LI Y G V+ A LF++M+E++ V+W +M+ G VK
Sbjct: 142 HIEK-LGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGE 200
Query: 211 YREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAA 270
R+ LF +M + ++ T++ + C + S+ + + +N + +
Sbjct: 201 LRDARRLFDEMPQRDL-ISWNTMLDGYARCREM--SKAFELFEKMPERNTVSW-----ST 252
Query: 271 LTDMYAKCGYIEEALRVF-KIVLE-KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIK 328
+ Y+K G +E A +F K+ L KNV TW II G A G +EA ++ QM SG+K
Sbjct: 253 MVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLK 312
Query: 329 PDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYE 388
D +I++L AC+ +GL+ G I ++R + N L+D+ + L +A++
Sbjct: 313 FDAAAVISILAACTESGLLSLGMRIHSILKRS-NLGSNAYVLNALLDMYAKCGNLKKAFD 371
Query: 389 VIRNMPMEPNAVLWGSLL 406
V ++P + + V W ++L
Sbjct: 372 VFNDIP-KKDLVSWNTML 388
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 79/173 (45%), Gaps = 22/173 (12%)
Query: 68 LAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGL 127
L L++ + A VFN I ++NT++ G G G I+L+++M G+
Sbjct: 353 LNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGI 412
Query: 128 DPDSFTYPILLKACGD----------LRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNF 177
PD T+ +L +C ++ V+ LV + + + ++ L R+
Sbjct: 413 RPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRV------- 465
Query: 178 GDVKSAQLLFDQMT-EKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVN 229
G +K A + M E NVV W A++ G + N +D+ +++ D+ V+++
Sbjct: 466 GRLKEAIKVVQTMPMEPNVVIWGALL-GACRMHNE---VDIAKEVLDNLVKLD 514
>sp|Q1PEU4|PP201_ARATH Pentatricopeptide repeat-containing protein At2g44880
OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2
Length = 555
Score = 302 bits (774), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 170/479 (35%), Positives = 281/479 (58%), Gaps = 36/479 (7%)
Query: 48 QVHAQIIKASFDNRTISDTQLAK-LIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGY 106
Q+H+QI + F +D ++ +++ ++ A F+++ + S ++ +I GY
Sbjct: 99 QLHSQIWRFGF----CADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGY 154
Query: 107 AEAGLGHRGIQLYTQMIGNGLDP---DSFTYPILLKA---CGDLRQVKGVHSLVVKSKDF 160
G +L+ QM P D Y ++ GD+ + + F
Sbjct: 155 IRCGELDLASKLFDQM------PHVKDVVIYNAMMDGFVKSGDMTSARRL---------F 199
Query: 161 NSVIH----SLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGID 216
+ + H + T +I YCN D+ +A+ LFD M E+N+V+W MI G+ + K +EGI
Sbjct: 200 DEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGIR 259
Query: 217 LFRKMR-DSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMY 275
LF++M+ + ++ +++T++SVL A ++ GA LG+W H FV + + K+ A+ DMY
Sbjct: 260 LFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMY 319
Query: 276 AKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLI 335
+KCG IE+A R+F + EK V +WN++I G A++G A+ +F M + KPD++T++
Sbjct: 320 SKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEE-KPDEITML 378
Query: 336 AVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPM 395
AV+TAC+H GL+E+G++ F+ MR + + ++HYGC+VDLL RA L EA ++I NMP
Sbjct: 379 AVITACNHGGLVEEGRKWFHVMR-EMGLNAKIEHYGCMVDLLGRAGSLKEAEDLITNMPF 437
Query: 396 EPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDA 455
EPN ++ S L+AC D +E AE +++ ++LEP NDGNYVL+ N+YAA +WDD
Sbjct: 438 EPNGIILSSFLSACGQYKD---IERAERILKKAVELEPQNDGNYVLLRNLYAADKRWDDF 494
Query: 456 GKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLREECY 514
G ++ +M++ K GCS+IEIN +V EF+ GD HP I+ +L + + + EE Y
Sbjct: 495 GMVKNVMRKNQAKKEVGCSLIEINYIVSEFISGDTTHPHRRSIHLVLGDLLMHMNEEKY 553
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 302 bits (774), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 170/506 (33%), Positives = 274/506 (54%), Gaps = 48/506 (9%)
Query: 48 QVHAQIIKASFDNRTISDTQL-AKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGY 106
QVH+ I K+ F +SD + + L++ + A VF+++ + + ++N++I +
Sbjct: 173 QVHSLIAKSPF----LSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCF 228
Query: 107 AEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVK---GVHSLVVKSKDF-NS 162
+ G + ++ M+ + ++PD T ++ AC L +K VH VVK+ N
Sbjct: 229 EQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRND 288
Query: 163 VIHS------------------------------LTRLITFYCNFGDVKSAQLLFDQMTE 192
+I S T +I+ Y K+A+L+F +M E
Sbjct: 289 IILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAE 348
Query: 193 KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWV 252
+NVV+W A+I G+ + E + LF ++ V + ++L ACA+L LG
Sbjct: 349 RNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQA 408
Query: 253 HEFVNKNCIILNDK------LGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGL 306
H V K+ +G +L DMY KCG +EE VF+ ++E++ +WN++I G
Sbjct: 409 HVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGF 468
Query: 307 AIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN 366
A +G G EA+++F +M SG KPD +T+I VL+AC HAG +E+G+ F +M RD+ V P
Sbjct: 469 AQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPL 528
Query: 367 VKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAME 426
HY C+VDLL RA L+EA +I MPM+P++V+WGSLL AC N+ L + E
Sbjct: 529 RDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVH---RNITLGKYVAE 585
Query: 427 RLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFM 486
+L+++EP N G YVL+SN+YA +W+D +R+ M++ + K PGCS I+I H FM
Sbjct: 586 KLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFM 645
Query: 487 VGDGRHPCSEEIYSMLEYVAISLREE 512
V D HP ++I+S+L+ + +R E
Sbjct: 646 VKDKSHPRKKQIHSLLDILIAEMRPE 671
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 126/491 (25%), Positives = 217/491 (44%), Gaps = 87/491 (17%)
Query: 9 SQLTHFTNSANSHKNSNTATKSHHHLPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQL 68
+ L+ FT+S+ K ++ KS + + VHA +IK+ F N
Sbjct: 11 ADLSSFTDSSPFAKLLDSCIKSK---------LSAIYVRYVHASVIKSGFSNEIFIQN-- 59
Query: 69 AKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVI------------------------- 103
+LI++ + VF+++ + + +N+V+
Sbjct: 60 -RLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQC 118
Query: 104 ------RGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQV-KG--VHSLV 154
G+A+ + + M G + +++ +L AC L + KG VHSL+
Sbjct: 119 TWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLI 178
Query: 155 VKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREG 214
KS F S ++ + L+ Y G+V AQ +FD+M ++NVV+W ++I + E
Sbjct: 179 AKSP-FLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEA 237
Query: 215 IDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILND-KLGAALTD 273
+D+F+ M +S VE +E+TL SV+SACA+L A ++G+ VH V KN + ND L A D
Sbjct: 238 LDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVD 297
Query: 274 MYAKCGYIEEALRVFKI-------------------------------VLEKNVCTWNSI 302
MYAKC I+EA +F + E+NV +WN++
Sbjct: 298 MYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNAL 357
Query: 303 IGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACS-----HAGLIEKGKEIFYNM 357
I G +G EEA+ +F ++ + P + +L AC+ H G+ + +
Sbjct: 358 IAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGF 417
Query: 358 RRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGAN 417
+ E ++ L+D+ + ++E Y V R M ME + V W +++ A +G
Sbjct: 418 KFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKM-MERDCVSWNAMIIGFAQ--NGYG 474
Query: 418 VELAEIAMERL 428
E E+ E L
Sbjct: 475 NEALELFREML 485
Score = 142 bits (358), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 102/366 (27%), Positives = 174/366 (47%), Gaps = 44/366 (12%)
Query: 53 IIKASFDNRTISDTQ-LAKLIESLVNSSQIA-YAHLVFNQIINPS----TFAFNTVIRGY 106
+K + D + +D+ AKL++S + S A Y V +I F N +I Y
Sbjct: 6 FLKLAADLSSFTDSSPFAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAY 65
Query: 107 AEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHS 166
++ G G Q++ +M P Y +NSV+
Sbjct: 66 SKCGSLEDGRQVFDKM------PQRNIYT------------------------WNSVVTG 95
Query: 167 LTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGV 226
LT+L G + A LF M E++ TW +M++G + E + F M G
Sbjct: 96 LTKL-------GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGF 148
Query: 227 EVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALR 286
+NE + SVLSAC+ L G VH + K+ + + +G+AL DMY+KCG + +A R
Sbjct: 149 VLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQR 208
Query: 287 VFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGL 346
VF + ++NV +WNS+I +G EA+ +F M S ++PD+VTL +V++AC+
Sbjct: 209 VFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSA 268
Query: 347 IEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLL 406
I+ G+E+ + ++ K+ ++ VD+ + + EA + +MP+ N + S++
Sbjct: 269 IKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIR-NVIAETSMI 327
Query: 407 TACASA 412
+ A A
Sbjct: 328 SGYAMA 333
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 106/226 (46%), Gaps = 16/226 (7%)
Query: 36 LLQKCTHLVQFK---QVHAQIIKASFDNRTISDTQL---AKLIESLVNSSQIAYAHLVFN 89
+L+ C L + Q H ++K F ++ + + LI+ V + +LVF
Sbjct: 392 ILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFR 451
Query: 90 QIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQV-K 148
+++ ++N +I G+A+ G G+ ++L+ +M+ +G PD T +L ACG V +
Sbjct: 452 KMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEE 511
Query: 149 GVHSLVVKSKDFN--SVIHSLTRLITFYCNFGDVKSAQLLFDQMT-EKNVVTWTAMINGH 205
G H ++DF + T ++ G ++ A+ + ++M + + V W +++
Sbjct: 512 GRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAAC 571
Query: 206 VKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKW 251
+N G + K+ + VE + +LS N+ A ELGKW
Sbjct: 572 KVHRNITLGKYVAEKLLE--VEPSNSGPYVLLS---NMYA-ELGKW 611
>sp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g34400
OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2
Length = 621
Score = 300 bits (767), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 170/474 (35%), Positives = 264/474 (55%), Gaps = 17/474 (3%)
Query: 47 KQVHAQIIKASFDNRTISDTQL-AKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRG 105
+ VH+ + K + D + LI Q+ YA +F++I T ++N++I G
Sbjct: 152 RSVHSSLFKVGLER----DVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISG 207
Query: 106 YAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKAC---GDLRQVKGVHSLVVKSKDFNS 162
Y+EAG + L+ +M G +PD T +L AC GDLR + + + + K S
Sbjct: 208 YSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLS 267
Query: 163 VIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMR 222
++LI+ Y GD+ SA+ +F+QM +K+ V WTAMI + + E LF +M
Sbjct: 268 TFLG-SKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEME 326
Query: 223 DSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIE 282
+GV + TL +VLSAC ++GA ELGK + ++ + N + L DMY KCG +E
Sbjct: 327 KTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVE 386
Query: 283 EALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACS 342
EALRVF+ + KN TWN++I A G +EA+ +F +M + P D+T I VL+AC
Sbjct: 387 EALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRMS---VPPSDITFIGVLSACV 443
Query: 343 HAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLW 402
HAGL+ +G F+ M + + P ++HY ++DLL RA +LDEA+E + P +P+ ++
Sbjct: 444 HAGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDEIML 503
Query: 403 GSLLTACASADDGANVELAEIAMERLIKL-EPFNDGNYVLMSNIYAAKAQWDDAGKMRRL 461
++L AC D V + E AM L+++ E N GNYV+ SN+ A WD++ KMR L
Sbjct: 504 AAILGACHKRKD---VAIREKAMRMLMEMKEAKNAGNYVISSNVLADMKMWDESAKMRAL 560
Query: 462 MKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCS-EEIYSMLEYVAISLREECY 514
M++R +VK PGCS IEI + EF+ G C E+ S+ + + ++ E Y
Sbjct: 561 MRDRGVVKTPGCSWIEIEGELMEFLAGSDYLQCGREDSGSLFDLLVEEMKRERY 614
Score = 213 bits (541), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 127/381 (33%), Positives = 204/381 (53%), Gaps = 14/381 (3%)
Query: 34 LPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN 93
L LL+KC + Q +Q+ AQ++ S + LI V Y+ +F+
Sbjct: 41 LFLLKKCISVNQLRQIQAQMLLHSVEKPNF-------LIPKAVELGDFNYSSFLFSVTEE 93
Query: 94 PSTFAFNTVIRGYAEAGLGHRG-IQLYTQMIGNGLDPDSFTYPILLKACGDLRQV---KG 149
P+ ++FN +IRG H + LY +M +GL PD FTY + AC L ++ +
Sbjct: 94 PNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRS 153
Query: 150 VHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQK 209
VHS + K +H LI Y G V A+ LFD++TE++ V+W +MI+G+ +
Sbjct: 154 VHSSLFKV-GLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAG 212
Query: 210 NYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGA 269
++ +DLFRKM + G E +E TLVS+L AC++LG G+ + E I L+ LG+
Sbjct: 213 YAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGS 272
Query: 270 ALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKP 329
L MY KCG ++ A RVF +++K+ W ++I + +G EA K+F++M+ +G+ P
Sbjct: 273 KLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSP 332
Query: 330 DDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEV 389
D TL VL+AC G +E GK+I + ++ N+ LVD+ + ++EA V
Sbjct: 333 DAGTLSTVLSACGSVGALELGKQI-ETHASELSLQHNIYVATGLVDMYGKCGRVEEALRV 391
Query: 390 IRNMPMEPNAVLWGSLLTACA 410
MP++ N W +++TA A
Sbjct: 392 FEAMPVK-NEATWNAMITAYA 411
>sp|Q9LJI9|PP260_ARATH Pentatricopeptide repeat-containing protein At3g28660
OS=Arabidopsis thaliana GN=PCMP-E80 PE=2 SV=1
Length = 504
Score = 300 bits (767), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 167/483 (34%), Positives = 279/483 (57%), Gaps = 16/483 (3%)
Query: 38 QKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVN-SSQIAYAHLVFNQIINPST 96
Q+C + Q K H+ I T + ++L L N + YA +F+ I P++
Sbjct: 19 QRCNTVKQIKSTHSLFIIHGLHRNTYAISKLLTAFLHLPNLNKHFHYASSIFDSIEIPNS 78
Query: 97 FAFNTVIRGYAEAGLGHRGIQLYTQMIGN---GLDPDSFTYPILLKACGD---LRQVKGV 150
F ++T+IR + + H G++ + M+ + P T+ L+ AC K +
Sbjct: 79 FVYDTMIRICSRSSQPHLGLRYFLLMVKEEEEDITPSYLTFHFLIVACLKACFFSVGKQI 138
Query: 151 HSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKN 210
H VVK+ F S H T ++ Y + A+ +FD++ + +VV W ++NG+V+
Sbjct: 139 HCWVVKNGVFLSDGHVQTGVLRIYVEDKLLFDARKVFDEIPQPDVVKWDVLMNGYVRCGL 198
Query: 211 YREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDK-LGA 269
EG+++F++M G+E +E ++ + L+ACA +GA GKW+HEFV K I +D +G
Sbjct: 199 GSEGLEVFKEMLVRGIEPDEFSVTTALTACAQVGALAQGKWIHEFVKKKRWIESDVFVGT 258
Query: 270 ALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMS-GIK 328
AL DMYAKCG IE A+ VF+ + +NV +W ++IGG A +G ++A +++ GIK
Sbjct: 259 ALVDMYAKCGCIETAVEVFEKLTRRNVFSWAALIGGYAAYGYAKKATTCLDRIEREDGIK 318
Query: 329 PDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYE 388
PD V L+ VL AC+H G +E+G+ + NM Y + P +HY C+VDL+CRA LD+A +
Sbjct: 319 PDSVVLLGVLAACAHGGFLEEGRTMLENMEARYGITPKHEHYSCIVDLMCRAGRLDDALD 378
Query: 389 VIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN----DGNYVLMSN 444
+I MPM+P A +WG+LL C + NVEL E+A++ L+ LE N + V +SN
Sbjct: 379 LIEKMPMKPLASVWGALLNGCRTHK---NVELGELAVQNLLDLEKGNVEEEEAALVQLSN 435
Query: 445 IYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEY 504
IY + + +A K+R ++++R I K PG S++E++ +V +F+ GD HP +I++++
Sbjct: 436 IYFSVQRNPEAFKVRGMIEQRGIRKTPGWSLLEVDGIVTKFVSGDVSHPNLLQIHTLIHL 495
Query: 505 VAI 507
+++
Sbjct: 496 LSV 498
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185,328,715
Number of Sequences: 539616
Number of extensions: 7575514
Number of successful extensions: 26703
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 19835
Number of HSP's gapped (non-prelim): 1935
length of query: 519
length of database: 191,569,459
effective HSP length: 122
effective length of query: 397
effective length of database: 125,736,307
effective search space: 49917313879
effective search space used: 49917313879
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)