Query 048578
Match_columns 519
No_of_seqs 536 out of 3561
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 10:51:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048578.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048578hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 2.7E-76 5.8E-81 607.2 57.6 503 7-519 103-611 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 4.8E-74 1E-78 604.4 57.7 490 21-519 279-774 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 2.4E-65 5.1E-70 538.5 44.4 466 21-505 178-651 (857)
4 PLN03218 maturation of RBCL 1; 100.0 2.9E-60 6.3E-65 490.8 51.0 440 27-474 367-850 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 7.8E-60 1.7E-64 487.6 48.0 437 28-473 435-917 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 1.2E-53 2.6E-58 439.4 42.0 399 93-505 84-488 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 8.1E-26 1.8E-30 243.6 46.0 442 41-506 445-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.9E-25 4.1E-30 240.7 48.7 422 29-464 464-899 (899)
9 KOG4626 O-linked N-acetylgluco 99.9 1.1E-20 2.4E-25 175.1 30.2 375 61-454 115-508 (966)
10 PRK11788 tetratricopeptide rep 99.9 7.1E-21 1.5E-25 184.3 30.7 296 171-473 42-355 (389)
11 KOG4626 O-linked N-acetylgluco 99.9 2.5E-20 5.5E-25 172.7 29.5 360 96-467 116-487 (966)
12 PRK11447 cellulose synthase su 99.9 4.1E-19 8.9E-24 192.7 43.0 232 272-519 468-748 (1157)
13 TIGR00990 3a0801s09 mitochondr 99.9 3E-19 6.6E-24 182.0 39.2 387 68-466 133-572 (615)
14 PRK11447 cellulose synthase su 99.9 5E-18 1.1E-22 184.3 47.2 350 106-469 361-745 (1157)
15 PRK11788 tetratricopeptide rep 99.9 6.5E-19 1.4E-23 170.6 33.6 292 103-432 42-348 (389)
16 PRK15174 Vi polysaccharide exp 99.9 5.2E-18 1.1E-22 172.4 37.7 265 163-435 109-385 (656)
17 PRK15174 Vi polysaccharide exp 99.9 1.2E-17 2.5E-22 169.8 39.4 347 79-468 19-384 (656)
18 PRK10049 pgaA outer membrane p 99.8 6E-17 1.3E-21 168.2 42.5 380 79-467 29-458 (765)
19 PRK09782 bacteriophage N4 rece 99.8 5.8E-16 1.3E-20 161.2 45.3 434 8-467 95-708 (987)
20 TIGR00990 3a0801s09 mitochondr 99.8 1E-15 2.2E-20 156.2 41.4 379 41-435 141-575 (615)
21 PRK10049 pgaA outer membrane p 99.8 1.2E-16 2.5E-21 166.1 33.0 393 96-507 15-455 (765)
22 PRK14574 hmsH outer membrane p 99.8 1.9E-14 4E-19 147.0 46.3 418 41-468 48-516 (822)
23 PRK09782 bacteriophage N4 rece 99.8 1.4E-14 2.9E-19 151.1 41.7 439 41-506 58-704 (987)
24 KOG4422 Uncharacterized conser 99.8 6.6E-14 1.4E-18 125.1 36.8 394 39-468 127-593 (625)
25 PRK14574 hmsH outer membrane p 99.7 5.3E-13 1.1E-17 136.5 42.3 378 79-465 48-479 (822)
26 KOG2002 TPR-containing nuclear 99.7 7E-13 1.5E-17 130.3 36.1 480 8-508 181-709 (1018)
27 PF13429 TPR_15: Tetratricopep 99.7 4E-16 8.6E-21 143.1 9.5 256 201-463 14-275 (280)
28 KOG2003 TPR repeat-containing 99.6 1.1E-12 2.4E-17 118.1 30.6 367 78-451 289-709 (840)
29 KOG0547 Translocase of outer m 99.6 2.1E-13 4.5E-18 124.0 26.0 354 100-464 119-565 (606)
30 KOG2002 TPR-containing nuclear 99.6 2.2E-12 4.8E-17 126.8 33.8 399 59-468 267-748 (1018)
31 KOG2076 RNA polymerase III tra 99.6 7.3E-13 1.6E-17 129.2 28.9 316 108-463 151-510 (895)
32 PRK10747 putative protoheme IX 99.6 9E-13 1.9E-17 126.6 29.5 145 278-431 242-390 (398)
33 KOG4422 Uncharacterized conser 99.6 8.2E-12 1.8E-16 112.0 32.2 363 28-411 205-608 (625)
34 PRK10747 putative protoheme IX 99.6 3.9E-12 8.5E-17 122.1 30.1 276 176-464 96-389 (398)
35 KOG1126 DNA-binding cell divis 99.6 4.1E-13 9E-18 127.0 22.0 279 179-468 334-623 (638)
36 KOG0495 HAT repeat protein [RN 99.6 2.1E-10 4.6E-15 108.4 38.4 386 69-467 413-848 (913)
37 KOG1915 Cell cycle control pro 99.6 7.6E-11 1.6E-15 107.2 33.2 412 79-506 87-534 (677)
38 KOG1155 Anaphase-promoting com 99.6 1.2E-10 2.6E-15 105.7 34.0 256 203-464 235-494 (559)
39 TIGR00540 hemY_coli hemY prote 99.5 5.7E-11 1.2E-15 114.8 33.9 255 170-430 124-398 (409)
40 KOG0495 HAT repeat protein [RN 99.5 3.5E-10 7.6E-15 106.9 37.0 438 25-479 435-892 (913)
41 COG2956 Predicted N-acetylgluc 99.5 3.6E-11 7.8E-16 104.1 27.1 216 109-359 48-277 (389)
42 PF13429 TPR_15: Tetratricopep 99.5 8.9E-14 1.9E-18 127.6 11.7 251 169-430 13-276 (280)
43 KOG2003 TPR repeat-containing 99.5 2.9E-11 6.4E-16 109.2 27.1 255 204-466 428-690 (840)
44 TIGR00540 hemY_coli hemY prote 99.5 3.5E-11 7.6E-16 116.3 30.2 280 174-463 94-397 (409)
45 KOG1126 DNA-binding cell divis 99.5 1.9E-12 4.1E-17 122.6 19.9 249 209-465 333-586 (638)
46 KOG1155 Anaphase-promoting com 99.5 1.3E-09 2.9E-14 99.1 35.4 347 100-463 168-534 (559)
47 KOG1915 Cell cycle control pro 99.5 3.8E-09 8.3E-14 96.4 38.0 408 47-469 93-540 (677)
48 KOG2076 RNA polymerase III tra 99.5 2.5E-09 5.4E-14 105.1 39.2 419 38-468 150-658 (895)
49 KOG1173 Anaphase-promoting com 99.5 1.2E-09 2.7E-14 101.8 33.8 261 196-464 245-517 (611)
50 COG2956 Predicted N-acetylgluc 99.4 2.2E-10 4.8E-15 99.3 25.6 287 176-472 47-354 (389)
51 TIGR02521 type_IV_pilW type IV 99.4 4.7E-11 1E-15 106.7 22.7 199 263-465 29-232 (234)
52 COG3071 HemY Uncharacterized e 99.4 3.8E-10 8.2E-15 100.9 27.2 279 177-468 97-393 (400)
53 COG3071 HemY Uncharacterized e 99.4 3.7E-09 8E-14 94.8 30.9 251 171-431 125-390 (400)
54 KOG4318 Bicoid mRNA stability 99.4 8.6E-10 1.9E-14 107.8 28.6 427 21-469 16-598 (1088)
55 KOG0547 Translocase of outer m 99.4 1.4E-09 3E-14 99.6 28.2 218 205-432 336-567 (606)
56 KOG4318 Bicoid mRNA stability 99.3 1.3E-10 2.8E-15 113.5 19.3 261 216-518 11-271 (1088)
57 KOG1174 Anaphase-promoting com 99.3 4.2E-08 9E-13 88.3 33.3 267 160-435 228-504 (564)
58 PRK12370 invasion protein regu 99.3 2E-09 4.4E-14 108.2 28.7 262 193-467 254-537 (553)
59 KOG4162 Predicted calmodulin-b 99.3 1.1E-08 2.3E-13 99.1 31.4 401 52-467 313-785 (799)
60 PF13041 PPR_2: PPR repeat fam 99.3 4.4E-12 9.5E-17 81.7 5.8 50 94-143 1-50 (50)
61 KOG1129 TPR repeat-containing 99.3 3.2E-10 7E-15 98.4 18.8 227 234-468 227-461 (478)
62 KOG1840 Kinesin light chain [C 99.3 1.1E-09 2.5E-14 104.9 23.9 230 231-463 200-477 (508)
63 TIGR02521 type_IV_pilW type IV 99.3 1.6E-09 3.5E-14 96.6 23.5 193 195-392 31-228 (234)
64 PF13041 PPR_2: PPR repeat fam 99.3 1.1E-11 2.4E-16 79.8 6.7 50 193-242 1-50 (50)
65 KOG1129 TPR repeat-containing 99.3 4.2E-10 9.1E-15 97.7 17.4 228 199-434 227-461 (478)
66 KOG2047 mRNA splicing factor [ 99.3 2.9E-07 6.4E-12 87.5 37.4 398 57-462 133-612 (835)
67 PRK12370 invasion protein regu 99.3 1.6E-09 3.5E-14 108.9 23.9 243 178-433 275-537 (553)
68 KOG2376 Signal recognition par 99.2 2.1E-07 4.6E-12 87.7 33.8 417 29-462 45-517 (652)
69 KOG1173 Anaphase-promoting com 99.2 2.5E-08 5.5E-13 93.3 27.5 281 160-447 240-534 (611)
70 KOG2047 mRNA splicing factor [ 99.2 1.4E-06 3.1E-11 83.0 38.4 284 166-453 389-711 (835)
71 PRK11189 lipoprotein NlpI; Pro 99.2 2.5E-09 5.4E-14 98.4 18.6 115 209-324 40-160 (296)
72 KOG1156 N-terminal acetyltrans 99.2 9E-07 1.9E-11 84.5 34.9 404 47-467 27-470 (700)
73 PF12569 NARP1: NMDA receptor- 99.1 1.4E-07 2.9E-12 92.0 29.4 286 170-464 10-333 (517)
74 COG3063 PilF Tfp pilus assembl 99.1 3.2E-08 7E-13 82.3 21.1 199 198-434 38-239 (250)
75 KOG1174 Anaphase-promoting com 99.1 4.5E-07 9.8E-12 81.8 29.8 265 193-467 230-502 (564)
76 PF12569 NARP1: NMDA receptor- 99.1 4.1E-08 8.9E-13 95.5 25.3 259 202-469 11-295 (517)
77 KOG1840 Kinesin light chain [C 99.1 2.4E-08 5.2E-13 96.0 22.9 228 200-430 204-478 (508)
78 COG3063 PilF Tfp pilus assembl 99.1 1.4E-08 3E-13 84.4 18.0 162 299-467 38-204 (250)
79 PRK11189 lipoprotein NlpI; Pro 99.1 7.2E-08 1.6E-12 88.8 25.0 143 178-322 40-191 (296)
80 KOG3785 Uncharacterized conser 99.0 2.8E-06 6E-11 75.3 30.5 380 71-470 66-495 (557)
81 KOG2376 Signal recognition par 99.0 3.9E-06 8.5E-11 79.4 33.0 383 66-467 13-489 (652)
82 KOG0548 Molecular co-chaperone 99.0 2.1E-07 4.6E-12 86.8 24.3 368 77-466 14-456 (539)
83 cd05804 StaR_like StaR_like; a 99.0 1.8E-06 4E-11 82.5 31.0 297 164-466 6-337 (355)
84 PF04733 Coatomer_E: Coatomer 99.0 1.4E-08 3E-13 92.0 14.1 247 174-435 11-269 (290)
85 PF04733 Coatomer_E: Coatomer 99.0 6.4E-08 1.4E-12 87.8 17.7 245 203-465 9-265 (290)
86 KOG1156 N-terminal acetyltrans 98.9 3.4E-05 7.3E-10 74.1 35.5 420 28-463 41-509 (700)
87 KOG1125 TPR repeat-containing 98.9 4.5E-08 9.7E-13 92.0 15.6 219 240-464 295-526 (579)
88 KOG0624 dsRNA-activated protei 98.9 7.3E-06 1.6E-10 72.4 26.5 297 163-468 37-373 (504)
89 KOG4340 Uncharacterized conser 98.9 1.2E-06 2.5E-11 75.8 21.2 311 127-461 6-335 (459)
90 KOG3785 Uncharacterized conser 98.9 1.1E-05 2.5E-10 71.5 27.6 371 79-463 36-455 (557)
91 KOG4340 Uncharacterized conser 98.8 9.5E-06 2.1E-10 70.3 25.8 387 66-467 14-445 (459)
92 KOG0624 dsRNA-activated protei 98.8 2.9E-05 6.4E-10 68.7 28.8 310 101-440 43-379 (504)
93 KOG0548 Molecular co-chaperone 98.8 1.5E-05 3.3E-10 74.8 28.6 401 41-461 16-485 (539)
94 PRK04841 transcriptional regul 98.8 3.6E-05 7.8E-10 83.4 36.8 297 168-467 413-762 (903)
95 KOG4162 Predicted calmodulin-b 98.8 5.6E-05 1.2E-09 74.1 32.8 391 36-437 332-789 (799)
96 TIGR03302 OM_YfiO outer membra 98.8 4.4E-07 9.6E-12 81.0 17.7 184 263-466 31-233 (235)
97 PRK10370 formate-dependent nit 98.8 3.9E-07 8.4E-12 78.0 16.4 149 303-468 23-176 (198)
98 cd05804 StaR_like StaR_like; a 98.8 3.6E-05 7.7E-10 73.6 30.8 313 195-513 6-341 (355)
99 KOG1070 rRNA processing protei 98.8 1.1E-06 2.4E-11 90.8 20.6 201 262-470 1455-1668(1710)
100 KOG0985 Vesicle coat protein c 98.7 0.00017 3.6E-09 72.9 34.4 209 229-461 983-1245(1666)
101 KOG3617 WD40 and TPR repeat-co 98.7 8.3E-05 1.8E-09 73.4 31.7 355 60-459 724-1168(1416)
102 KOG0985 Vesicle coat protein c 98.7 0.00012 2.5E-09 74.0 31.7 386 28-458 950-1376(1666)
103 KOG3616 Selective LIM binding 98.7 1.7E-05 3.6E-10 77.1 25.1 35 79-118 545-579 (1636)
104 PLN02789 farnesyltranstransfer 98.7 1.2E-05 2.5E-10 74.1 23.5 180 281-463 88-300 (320)
105 KOG3616 Selective LIM binding 98.7 5E-05 1.1E-09 73.9 27.9 343 77-461 744-1130(1636)
106 KOG1128 Uncharacterized conser 98.7 4.1E-06 8.9E-11 81.3 20.5 218 261-505 394-613 (777)
107 KOG1125 TPR repeat-containing 98.7 2.6E-06 5.6E-11 80.5 18.4 248 203-457 293-563 (579)
108 KOG1914 mRNA cleavage and poly 98.7 0.00029 6.2E-09 66.5 31.3 418 59-510 17-503 (656)
109 PRK15359 type III secretion sy 98.7 1E-06 2.3E-11 71.3 13.8 122 317-447 14-137 (144)
110 KOG3617 WD40 and TPR repeat-co 98.6 3.9E-05 8.5E-10 75.5 25.6 378 92-513 722-1159(1416)
111 COG5010 TadD Flp pilus assembl 98.6 6.1E-06 1.3E-10 70.5 17.6 160 295-461 66-227 (257)
112 PRK15359 type III secretion sy 98.6 1E-06 2.2E-11 71.3 12.6 108 352-467 14-123 (144)
113 KOG1128 Uncharacterized conser 98.6 8.9E-06 1.9E-10 79.0 19.9 216 160-393 394-613 (777)
114 PRK04841 transcriptional regul 98.6 0.0002 4.3E-09 77.8 33.0 291 172-465 382-720 (903)
115 PF12854 PPR_1: PPR repeat 98.6 1.3E-07 2.8E-12 54.5 4.4 32 362-393 2-33 (34)
116 KOG2053 Mitochondrial inherita 98.6 0.00083 1.8E-08 67.4 33.1 393 63-470 42-507 (932)
117 PF12854 PPR_1: PPR repeat 98.6 1.2E-07 2.6E-12 54.6 4.1 34 325-358 1-34 (34)
118 PRK10370 formate-dependent nit 98.6 1.2E-05 2.5E-10 69.0 18.1 154 272-439 23-181 (198)
119 KOG1070 rRNA processing protei 98.5 2.6E-05 5.7E-10 81.0 23.1 193 195-393 1458-1660(1710)
120 PRK14720 transcript cleavage f 98.5 2.4E-05 5.2E-10 80.4 23.0 233 163-447 30-268 (906)
121 KOG3081 Vesicle coat complex C 98.5 0.00011 2.3E-09 63.1 22.7 175 251-434 94-274 (299)
122 PRK15179 Vi polysaccharide bio 98.5 1.1E-05 2.3E-10 82.0 20.1 160 295-467 85-247 (694)
123 KOG1127 TPR repeat-containing 98.5 3.8E-05 8.2E-10 77.3 22.0 372 80-461 473-909 (1238)
124 TIGR03302 OM_YfiO outer membra 98.5 1.8E-05 3.9E-10 70.6 18.1 181 228-433 31-234 (235)
125 KOG3060 Uncharacterized conser 98.5 4.2E-05 9.1E-10 65.0 18.2 172 268-442 55-231 (289)
126 PLN02789 farnesyltranstransfer 98.4 0.00037 7.9E-09 64.4 25.0 224 205-434 47-305 (320)
127 PRK15363 pathogenicity island 98.4 7.8E-06 1.7E-10 65.1 12.1 96 366-464 34-131 (157)
128 COG4783 Putative Zn-dependent 98.4 6.5E-05 1.4E-09 70.0 19.6 126 338-468 313-440 (484)
129 COG5010 TadD Flp pilus assembl 98.4 3.7E-05 8E-10 65.9 16.2 135 328-467 63-199 (257)
130 KOG3081 Vesicle coat complex C 98.3 0.00039 8.5E-09 59.8 21.7 169 216-393 94-268 (299)
131 TIGR02552 LcrH_SycD type III s 98.3 1.1E-05 2.3E-10 65.0 11.3 96 368-466 18-115 (135)
132 PRK15179 Vi polysaccharide bio 98.3 0.00016 3.6E-09 73.6 21.9 143 260-405 81-228 (694)
133 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 4.3E-05 9.4E-10 71.9 16.1 131 264-397 168-298 (395)
134 PRK14720 transcript cleavage f 98.3 0.0003 6.4E-09 72.7 23.1 233 61-342 30-268 (906)
135 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 2.5E-05 5.4E-10 73.4 13.9 123 333-463 171-295 (395)
136 TIGR00756 PPR pentatricopeptid 98.2 2.4E-06 5.2E-11 50.1 4.6 35 97-131 1-35 (35)
137 COG4783 Putative Zn-dependent 98.2 0.00058 1.3E-08 63.9 21.7 137 274-432 315-455 (484)
138 TIGR02552 LcrH_SycD type III s 98.2 5.7E-05 1.2E-09 60.7 13.6 101 332-437 18-120 (135)
139 PF13812 PPR_3: Pentatricopept 98.2 3.5E-06 7.6E-11 49.0 4.3 34 96-129 1-34 (34)
140 KOG1127 TPR repeat-containing 98.1 0.0036 7.8E-08 63.8 26.7 416 37-463 466-994 (1238)
141 PF09976 TPR_21: Tetratricopep 98.1 0.00011 2.5E-09 59.7 13.5 114 344-461 24-143 (145)
142 TIGR00756 PPR pentatricopeptid 98.1 5.7E-06 1.2E-10 48.4 4.3 34 197-230 2-35 (35)
143 KOG3060 Uncharacterized conser 98.1 0.00039 8.5E-09 59.3 16.5 164 298-468 54-223 (289)
144 COG4235 Cytochrome c biogenesi 98.1 4.7E-05 1E-09 67.0 11.3 110 363-472 152-263 (287)
145 PF13812 PPR_3: Pentatricopept 98.1 7.7E-06 1.7E-10 47.5 4.3 33 196-228 2-34 (34)
146 cd00189 TPR Tetratricopeptide 98.0 4.6E-05 1E-09 56.6 9.1 94 369-465 2-97 (100)
147 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.0001 2.2E-09 57.7 11.1 93 370-465 5-105 (119)
148 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00013 2.9E-09 57.0 11.5 105 333-440 4-114 (119)
149 KOG0553 TPR repeat-containing 97.9 0.00011 2.4E-09 64.3 10.4 100 342-446 92-193 (304)
150 PF04840 Vps16_C: Vps16, C-ter 97.9 0.018 3.9E-07 53.2 29.7 123 267-409 179-301 (319)
151 PF09976 TPR_21: Tetratricopep 97.9 0.00098 2.1E-08 54.2 15.3 115 309-428 24-144 (145)
152 PF12895 Apc3: Anaphase-promot 97.9 1.3E-05 2.9E-10 58.1 3.8 77 381-461 3-83 (84)
153 PF05843 Suf: Suppressor of fo 97.9 0.00039 8.5E-09 63.3 13.7 132 297-434 2-139 (280)
154 PF13414 TPR_11: TPR repeat; P 97.9 4E-05 8.7E-10 53.1 5.6 65 398-465 2-67 (69)
155 PF14938 SNAP: Soluble NSF att 97.8 0.0016 3.4E-08 59.7 17.3 149 273-434 102-269 (282)
156 PF01535 PPR: PPR repeat; Int 97.8 2.9E-05 6.2E-10 43.9 3.5 31 97-127 1-31 (31)
157 PLN03088 SGT1, suppressor of 97.8 0.00019 4.2E-09 67.8 11.0 109 336-449 7-117 (356)
158 PRK02603 photosystem I assembl 97.8 0.00029 6.2E-09 59.2 10.9 80 369-451 37-121 (172)
159 COG5107 RNA14 Pre-mRNA 3'-end 97.8 0.032 6.9E-07 52.1 31.4 375 42-434 24-534 (660)
160 PF13432 TPR_16: Tetratricopep 97.8 4.9E-05 1.1E-09 51.9 5.0 58 406-466 4-61 (65)
161 PLN03088 SGT1, suppressor of 97.8 0.00045 9.7E-09 65.4 13.0 106 302-410 8-114 (356)
162 cd00189 TPR Tetratricopeptide 97.7 0.00054 1.2E-08 50.6 10.6 89 301-392 5-93 (100)
163 PF01535 PPR: PPR repeat; Int 97.7 4.2E-05 9.1E-10 43.2 3.3 30 197-226 2-31 (31)
164 PRK10153 DNA-binding transcrip 97.7 0.0023 4.9E-08 63.4 17.3 138 294-436 335-487 (517)
165 PRK02603 photosystem I assembl 97.7 0.0014 3.1E-08 55.0 13.8 129 297-451 36-166 (172)
166 CHL00033 ycf3 photosystem I as 97.7 0.00044 9.4E-09 57.9 10.5 94 366-462 34-139 (168)
167 KOG0553 TPR repeat-containing 97.7 0.00014 3.1E-09 63.6 7.2 91 375-468 89-181 (304)
168 PF14938 SNAP: Soluble NSF att 97.7 0.0065 1.4E-07 55.7 18.4 204 165-400 36-269 (282)
169 COG4700 Uncharacterized protei 97.7 0.0094 2E-07 48.6 16.6 131 327-464 85-221 (251)
170 PF08579 RPM2: Mitochondrial r 97.6 0.0013 2.7E-08 48.8 10.3 82 197-278 27-117 (120)
171 PF14559 TPR_19: Tetratricopep 97.6 7.6E-05 1.6E-09 51.6 3.8 53 415-467 4-56 (68)
172 KOG1130 Predicted G-alpha GTPa 97.6 0.00036 7.8E-09 63.6 8.6 130 332-464 196-343 (639)
173 PF13371 TPR_9: Tetratricopept 97.6 0.00025 5.5E-09 49.7 6.3 58 407-467 3-60 (73)
174 KOG0550 Molecular chaperone (D 97.6 0.0035 7.7E-08 57.5 14.6 159 305-470 178-355 (486)
175 PF12895 Apc3: Anaphase-promot 97.6 0.00024 5.1E-09 51.5 6.1 81 309-392 2-83 (84)
176 PF08579 RPM2: Mitochondrial r 97.5 0.0016 3.4E-08 48.3 9.8 79 300-379 29-116 (120)
177 PF04840 Vps16_C: Vps16, C-ter 97.5 0.074 1.6E-06 49.2 22.9 111 333-463 179-289 (319)
178 PRK10866 outer membrane biogen 97.5 0.015 3.3E-07 51.6 17.9 55 337-391 181-236 (243)
179 PF10037 MRP-S27: Mitochondria 97.5 0.001 2.2E-08 63.2 10.7 118 161-278 63-186 (429)
180 COG3898 Uncharacterized membra 97.5 0.081 1.8E-06 48.6 27.0 274 177-469 97-396 (531)
181 PRK15363 pathogenicity island 97.5 0.015 3.3E-07 46.7 15.5 92 298-392 37-128 (157)
182 PF05843 Suf: Suppressor of fo 97.5 0.0011 2.5E-08 60.3 10.6 129 332-465 2-136 (280)
183 KOG2053 Mitochondrial inherita 97.5 0.17 3.7E-06 51.6 39.4 189 32-225 43-256 (932)
184 PF13432 TPR_16: Tetratricopep 97.4 0.00062 1.3E-08 46.4 6.6 60 373-435 3-64 (65)
185 KOG2280 Vacuolar assembly/sort 97.4 0.16 3.5E-06 50.7 26.4 327 100-462 441-796 (829)
186 PF10037 MRP-S27: Mitochondria 97.4 0.0027 5.8E-08 60.4 12.3 114 225-338 61-180 (429)
187 PF13431 TPR_17: Tetratricopep 97.4 0.00012 2.7E-09 42.0 2.1 33 425-457 2-34 (34)
188 CHL00033 ycf3 photosystem I as 97.4 0.0069 1.5E-07 50.7 13.5 81 195-276 35-117 (168)
189 PRK10153 DNA-binding transcrip 97.4 0.0096 2.1E-07 59.1 16.3 136 326-468 332-485 (517)
190 COG4700 Uncharacterized protei 97.3 0.048 1E-06 44.6 16.9 124 227-352 86-214 (251)
191 PRK15331 chaperone protein Sic 97.3 0.0025 5.5E-08 51.3 9.5 90 372-464 42-133 (165)
192 PF14559 TPR_19: Tetratricopep 97.3 0.0011 2.5E-08 45.5 6.8 59 343-403 3-62 (68)
193 KOG2796 Uncharacterized conser 97.3 0.019 4.2E-07 49.5 15.0 138 196-335 178-323 (366)
194 PF12688 TPR_5: Tetratrico pep 97.3 0.0084 1.8E-07 46.3 11.9 92 301-392 6-100 (120)
195 PF06239 ECSIT: Evolutionarily 97.3 0.0038 8.3E-08 52.5 10.3 97 184-280 34-153 (228)
196 KOG0550 Molecular chaperone (D 97.3 0.14 3E-06 47.5 20.8 84 307-393 260-347 (486)
197 KOG2796 Uncharacterized conser 97.3 0.021 4.6E-07 49.3 14.7 132 334-469 180-319 (366)
198 PF12688 TPR_5: Tetratrico pep 97.2 0.014 3E-07 45.1 12.7 104 201-304 7-114 (120)
199 KOG2041 WD40 repeat protein [G 97.2 0.25 5.4E-06 49.0 27.9 337 59-431 689-1086(1189)
200 PF13414 TPR_11: TPR repeat; P 97.2 0.00093 2E-08 46.2 5.8 64 367-433 3-69 (69)
201 PF13281 DUF4071: Domain of un 97.2 0.04 8.7E-07 51.4 17.8 161 268-434 144-337 (374)
202 PF06239 ECSIT: Evolutionarily 97.2 0.0046 9.9E-08 52.0 10.3 88 292-380 43-151 (228)
203 PRK10803 tol-pal system protei 97.2 0.0031 6.7E-08 56.5 9.8 50 415-464 193-245 (263)
204 PRK10866 outer membrane biogen 97.2 0.053 1.2E-06 48.2 17.3 172 272-463 39-239 (243)
205 KOG1914 mRNA cleavage and poly 97.0 0.36 7.8E-06 46.5 34.2 417 29-456 19-530 (656)
206 PF09205 DUF1955: Domain of un 97.0 0.074 1.6E-06 40.8 13.6 140 307-468 13-152 (161)
207 KOG1538 Uncharacterized conser 96.9 0.062 1.3E-06 52.5 16.3 22 304-325 825-846 (1081)
208 PRK11619 lytic murein transgly 96.9 0.66 1.4E-05 47.7 32.0 323 107-462 44-372 (644)
209 KOG1538 Uncharacterized conser 96.9 0.064 1.4E-06 52.4 15.8 90 163-255 555-657 (1081)
210 PRK10803 tol-pal system protei 96.8 0.044 9.6E-07 49.1 13.7 101 333-436 145-251 (263)
211 PF03704 BTAD: Bacterial trans 96.8 0.0035 7.7E-08 51.0 6.1 68 401-471 64-136 (146)
212 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.0067 1.4E-07 57.3 8.4 62 400-464 76-140 (453)
213 PF12921 ATP13: Mitochondrial 96.8 0.019 4E-07 44.8 9.6 53 326-378 47-99 (126)
214 PF13428 TPR_14: Tetratricopep 96.7 0.0033 7.2E-08 38.7 4.1 41 401-444 3-43 (44)
215 PF13371 TPR_9: Tetratricopept 96.7 0.0065 1.4E-07 42.4 6.1 61 375-438 3-65 (73)
216 COG4235 Cytochrome c biogenesi 96.7 0.068 1.5E-06 47.6 13.5 103 328-435 153-260 (287)
217 PF07079 DUF1347: Protein of u 96.6 0.63 1.4E-05 44.0 31.7 367 79-463 93-522 (549)
218 KOG2041 WD40 repeat protein [G 96.6 0.85 1.8E-05 45.5 21.5 285 79-389 748-1079(1189)
219 PF03704 BTAD: Bacterial trans 96.6 0.054 1.2E-06 43.9 12.2 71 298-369 64-138 (146)
220 PF13525 YfiO: Outer membrane 96.4 0.18 3.9E-06 43.6 14.6 49 405-456 147-198 (203)
221 KOG1130 Predicted G-alpha GTPa 96.4 0.024 5.2E-07 52.2 9.2 128 232-359 197-343 (639)
222 PF13525 YfiO: Outer membrane 96.4 0.55 1.2E-05 40.6 19.0 83 300-386 114-197 (203)
223 KOG0543 FKBP-type peptidyl-pro 96.4 0.055 1.2E-06 50.1 11.5 95 368-465 258-355 (397)
224 PF13424 TPR_12: Tetratricopep 96.2 0.0074 1.6E-07 42.8 4.2 61 401-464 7-74 (78)
225 PF13424 TPR_12: Tetratricopep 96.2 0.0095 2.1E-07 42.2 4.6 59 333-391 7-70 (78)
226 PF12921 ATP13: Mitochondrial 96.2 0.068 1.5E-06 41.7 9.5 48 362-409 47-98 (126)
227 KOG2280 Vacuolar assembly/sort 96.1 1.8 3.9E-05 43.7 28.0 108 267-390 686-793 (829)
228 PF10300 DUF3808: Protein of u 96.0 0.36 7.9E-06 47.6 16.1 113 345-463 247-374 (468)
229 PRK11906 transcriptional regul 95.9 0.16 3.6E-06 48.3 12.1 144 311-460 273-431 (458)
230 PF13281 DUF4071: Domain of un 95.8 1.2 2.5E-05 42.0 17.5 168 166-359 143-333 (374)
231 COG3118 Thioredoxin domain-con 95.8 0.72 1.6E-05 41.2 15.1 121 340-466 143-266 (304)
232 PRK15331 chaperone protein Sic 95.8 0.8 1.7E-05 37.2 14.1 84 240-324 47-133 (165)
233 COG3118 Thioredoxin domain-con 95.8 1.4 3E-05 39.5 17.0 173 283-460 121-296 (304)
234 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.079 1.7E-06 50.3 9.6 62 367-431 75-141 (453)
235 PF13512 TPR_18: Tetratricopep 95.7 0.33 7.2E-06 38.4 11.5 56 377-435 20-80 (142)
236 KOG0543 FKBP-type peptidyl-pro 95.7 0.11 2.3E-06 48.3 10.0 66 399-467 257-322 (397)
237 KOG2610 Uncharacterized conser 95.7 0.33 7.2E-06 43.8 12.6 48 310-358 117-164 (491)
238 KOG4555 TPR repeat-containing 95.5 0.098 2.1E-06 40.1 7.5 89 376-467 52-146 (175)
239 COG0457 NrfG FOG: TPR repeat [ 95.5 1.6 3.4E-05 38.2 26.1 197 231-434 60-268 (291)
240 PF04053 Coatomer_WDAD: Coatom 95.4 0.65 1.4E-05 45.2 15.0 158 204-394 270-429 (443)
241 KOG1585 Protein required for f 95.4 1.6 3.4E-05 37.9 16.5 24 198-221 34-57 (308)
242 PF09205 DUF1955: Domain of un 95.4 0.9 2E-05 35.1 14.2 137 205-363 12-151 (161)
243 COG3898 Uncharacterized membra 95.4 2.3 4.9E-05 39.6 27.7 274 79-393 98-389 (531)
244 PRK11906 transcriptional regul 95.3 0.93 2E-05 43.4 14.9 140 280-427 273-432 (458)
245 KOG3941 Intermediate in Toll s 95.3 0.22 4.8E-06 43.8 9.9 109 183-291 53-185 (406)
246 COG0457 NrfG FOG: TPR repeat [ 95.3 1.8 4E-05 37.7 26.9 219 244-467 37-267 (291)
247 COG1729 Uncharacterized protei 95.2 0.17 3.7E-06 44.5 9.3 86 308-393 153-241 (262)
248 KOG3941 Intermediate in Toll s 95.2 0.22 4.7E-06 43.8 9.6 98 285-383 54-174 (406)
249 KOG1258 mRNA processing protei 95.1 3.8 8.3E-05 40.4 27.3 180 263-450 295-489 (577)
250 PF08631 SPO22: Meiosis protei 95.1 0.55 1.2E-05 42.9 12.8 207 306-516 3-236 (278)
251 smart00299 CLH Clathrin heavy 95.1 1.4 3.1E-05 35.3 14.6 129 298-448 9-137 (140)
252 PF10300 DUF3808: Protein of u 95.1 4 8.7E-05 40.4 22.1 157 100-257 192-374 (468)
253 PF13512 TPR_18: Tetratricopep 95.0 0.34 7.4E-06 38.3 9.6 116 303-437 17-134 (142)
254 KOG1941 Acetylcholine receptor 94.9 0.33 7.2E-06 44.3 10.2 162 298-462 85-272 (518)
255 COG5107 RNA14 Pre-mRNA 3'-end 94.8 3.8 8.3E-05 38.9 26.0 130 333-467 399-533 (660)
256 COG1729 Uncharacterized protei 94.8 0.26 5.6E-06 43.4 9.1 101 333-437 144-250 (262)
257 KOG1941 Acetylcholine receptor 94.7 0.86 1.9E-05 41.8 12.2 220 174-393 16-272 (518)
258 KOG1586 Protein required for f 94.6 1.3 2.8E-05 38.0 12.3 95 373-467 119-226 (288)
259 PF04053 Coatomer_WDAD: Coatom 94.4 1.1 2.5E-05 43.6 13.5 155 174-357 271-428 (443)
260 COG4785 NlpI Lipoprotein NlpI, 94.2 3.1 6.8E-05 35.4 14.5 32 436-467 237-268 (297)
261 PF04184 ST7: ST7 protein; In 94.2 5.8 0.00013 38.4 17.9 57 302-358 265-322 (539)
262 KOG2610 Uncharacterized conser 94.1 0.51 1.1E-05 42.7 9.5 116 342-462 114-235 (491)
263 KOG4555 TPR repeat-containing 94.1 0.67 1.5E-05 35.7 8.8 89 340-434 52-147 (175)
264 PF08631 SPO22: Meiosis protei 94.1 4.7 0.0001 36.8 22.6 117 175-293 4-149 (278)
265 KOG2114 Vacuolar assembly/sort 94.0 7.6 0.00016 40.1 18.3 177 166-358 336-517 (933)
266 PF07079 DUF1347: Protein of u 93.9 6 0.00013 37.8 29.0 324 67-404 133-530 (549)
267 PF13176 TPR_7: Tetratricopept 93.9 0.11 2.5E-06 30.0 3.6 26 438-463 1-26 (36)
268 COG4105 ComL DNA uptake lipopr 93.7 4.5 9.7E-05 35.6 19.8 59 406-468 174-235 (254)
269 PF09613 HrpB1_HrpK: Bacterial 93.7 0.45 9.8E-06 38.4 7.7 70 379-451 22-93 (160)
270 COG3629 DnrI DNA-binding trans 93.7 0.38 8.2E-06 43.1 8.0 61 401-464 155-215 (280)
271 KOG2114 Vacuolar assembly/sort 93.6 2.7 5.8E-05 43.1 14.4 147 167-323 371-517 (933)
272 KOG4234 TPR repeat-containing 93.6 0.24 5.3E-06 41.2 6.2 101 340-445 104-211 (271)
273 TIGR02561 HrpB1_HrpK type III 93.6 0.4 8.6E-06 38.0 7.0 52 415-466 23-74 (153)
274 PF10602 RPN7: 26S proteasome 93.6 1.7 3.7E-05 36.4 11.5 96 298-393 38-139 (177)
275 PF13428 TPR_14: Tetratricopep 93.5 0.14 2.9E-06 31.4 3.7 33 436-468 1-33 (44)
276 KOG1585 Protein required for f 93.4 5 0.00011 34.9 15.6 86 164-258 31-119 (308)
277 PF07719 TPR_2: Tetratricopept 93.3 0.27 5.8E-06 27.8 4.6 30 402-434 4-33 (34)
278 PF00515 TPR_1: Tetratricopept 93.2 0.2 4.3E-06 28.4 3.9 31 401-434 3-33 (34)
279 COG2909 MalT ATP-dependent tra 93.1 11 0.00025 39.2 18.1 198 275-475 425-657 (894)
280 smart00299 CLH Clathrin heavy 93.1 3.8 8.1E-05 32.8 15.5 40 201-241 13-52 (140)
281 COG4649 Uncharacterized protei 93.0 2.8 6.1E-05 34.3 11.1 50 415-464 145-195 (221)
282 PF02259 FAT: FAT domain; Int 92.6 9.7 0.00021 36.1 21.0 152 295-449 145-305 (352)
283 KOG4234 TPR repeat-containing 92.5 2.1 4.5E-05 35.9 10.0 94 303-400 102-202 (271)
284 PRK09687 putative lyase; Provi 92.5 8.3 0.00018 35.2 25.6 79 162-242 35-117 (280)
285 COG4649 Uncharacterized protei 92.4 2.5 5.4E-05 34.6 10.0 134 196-330 60-201 (221)
286 PF02259 FAT: FAT domain; Int 92.2 10 0.00022 35.9 16.5 68 398-468 145-216 (352)
287 COG4105 ComL DNA uptake lipopr 91.9 8.4 0.00018 33.9 18.2 158 275-435 44-237 (254)
288 PF04184 ST7: ST7 protein; In 91.7 3.3 7E-05 40.1 11.7 48 415-462 272-321 (539)
289 COG3629 DnrI DNA-binding trans 91.3 2.3 4.9E-05 38.3 9.8 77 299-376 156-236 (280)
290 KOG1920 IkappaB kinase complex 91.3 25 0.00053 38.2 25.7 25 199-223 794-820 (1265)
291 KOG1258 mRNA processing protei 91.3 17 0.00036 36.2 26.0 118 332-456 298-420 (577)
292 PF07035 Mic1: Colon cancer-as 91.3 7.3 0.00016 32.1 12.4 135 116-259 14-149 (167)
293 PF04097 Nic96: Nup93/Nic96; 91.3 12 0.00026 38.6 16.4 32 367-398 500-536 (613)
294 PF13176 TPR_7: Tetratricopept 91.1 0.57 1.2E-05 27.1 4.1 25 197-221 1-25 (36)
295 COG1747 Uncharacterized N-term 91.1 16 0.00035 35.6 22.7 176 263-448 64-251 (711)
296 KOG3364 Membrane protein invol 90.8 3 6.5E-05 32.5 8.5 20 415-434 84-103 (149)
297 PF02284 COX5A: Cytochrome c o 90.8 2 4.3E-05 31.6 7.2 61 313-375 27-87 (108)
298 PF07721 TPR_4: Tetratricopept 90.6 0.34 7.4E-06 25.6 2.6 24 437-460 2-25 (26)
299 KOG0890 Protein kinase of the 90.6 42 0.00091 39.5 26.3 283 166-468 1422-1734(2382)
300 PF00515 TPR_1: Tetratricopept 90.5 0.35 7.6E-06 27.4 2.8 30 437-466 2-31 (34)
301 PF07719 TPR_2: Tetratricopept 90.4 0.35 7.6E-06 27.3 2.8 30 437-466 2-31 (34)
302 PF10602 RPN7: 26S proteasome 90.4 4.3 9.3E-05 34.0 10.3 62 197-258 38-101 (177)
303 cd00923 Cyt_c_Oxidase_Va Cytoc 90.3 2.1 4.6E-05 31.1 7.0 63 311-375 22-84 (103)
304 PF07035 Mic1: Colon cancer-as 90.1 9.5 0.00021 31.4 14.9 123 92-224 25-149 (167)
305 PF13170 DUF4003: Protein of u 89.7 16 0.00035 33.6 14.6 136 211-377 78-227 (297)
306 TIGR02508 type_III_yscG type I 89.4 6.8 0.00015 28.7 9.5 88 245-336 20-107 (115)
307 KOG1920 IkappaB kinase complex 89.3 37 0.00079 37.0 21.9 108 275-393 918-1025(1265)
308 KOG2066 Vacuolar assembly/sort 89.2 30 0.00064 35.8 27.3 64 336-411 639-702 (846)
309 PF13181 TPR_8: Tetratricopept 88.9 0.9 1.9E-05 25.6 3.7 19 415-433 14-32 (34)
310 PF13929 mRNA_stabil: mRNA sta 88.8 9.2 0.0002 34.4 11.4 112 109-220 141-263 (292)
311 PF13374 TPR_10: Tetratricopep 88.6 0.81 1.8E-05 27.2 3.6 28 437-464 3-30 (42)
312 PF00637 Clathrin: Region in C 88.3 0.099 2.2E-06 42.2 -0.9 84 102-190 13-96 (143)
313 PRK15180 Vi polysaccharide bio 88.2 9 0.0002 36.8 11.4 120 308-434 301-423 (831)
314 KOG4570 Uncharacterized conser 88.2 5 0.00011 36.3 9.2 100 259-359 58-163 (418)
315 COG1747 Uncharacterized N-term 87.9 29 0.00062 34.0 20.5 96 161-259 63-160 (711)
316 PF13174 TPR_6: Tetratricopept 87.8 0.57 1.2E-05 26.1 2.3 29 438-466 2-30 (33)
317 PF13181 TPR_8: Tetratricopept 87.6 1.1 2.4E-05 25.2 3.5 28 437-464 2-29 (34)
318 PF09613 HrpB1_HrpK: Bacterial 87.6 14 0.0003 30.1 12.8 69 340-411 19-89 (160)
319 PF13170 DUF4003: Protein of u 87.6 23 0.0005 32.6 15.4 148 312-462 78-243 (297)
320 KOG0276 Vesicle coat complex C 87.3 8.9 0.00019 38.0 11.1 151 276-462 597-747 (794)
321 KOG4648 Uncharacterized conser 87.0 1.3 2.7E-05 40.4 5.0 99 337-440 103-203 (536)
322 PF04910 Tcf25: Transcriptiona 86.9 17 0.00036 34.6 12.8 121 331-464 40-167 (360)
323 KOG4648 Uncharacterized conser 86.8 2 4.3E-05 39.2 6.1 95 303-401 104-200 (536)
324 PF04097 Nic96: Nup93/Nic96; 86.0 46 0.00099 34.5 20.5 60 97-157 112-178 (613)
325 KOG1464 COP9 signalosome, subu 85.8 25 0.00054 31.2 18.1 242 177-427 40-328 (440)
326 COG2976 Uncharacterized protei 85.7 20 0.00044 30.2 11.4 88 375-466 97-189 (207)
327 PF00637 Clathrin: Region in C 85.6 1 2.2E-05 36.3 3.6 53 202-254 14-66 (143)
328 PF11207 DUF2989: Protein of u 85.4 5.1 0.00011 33.9 7.5 74 379-456 119-198 (203)
329 cd00923 Cyt_c_Oxidase_Va Cytoc 84.8 8 0.00017 28.2 7.2 46 213-258 25-70 (103)
330 KOG1550 Extracellular protein 84.8 49 0.0011 33.8 16.3 153 307-469 260-430 (552)
331 PF13431 TPR_17: Tetratricopep 84.6 1.5 3.2E-05 25.0 2.9 24 364-387 10-33 (34)
332 PF14561 TPR_20: Tetratricopep 83.0 3.1 6.6E-05 30.3 4.7 45 423-467 9-53 (90)
333 TIGR02508 type_III_yscG type I 83.0 16 0.00035 26.9 9.1 60 172-234 47-106 (115)
334 PF13374 TPR_10: Tetratricopep 82.7 3.5 7.5E-05 24.3 4.4 28 196-223 3-30 (42)
335 PF02284 COX5A: Cytochrome c o 82.3 11 0.00024 27.8 7.1 46 214-259 29-74 (108)
336 TIGR03504 FimV_Cterm FimV C-te 82.1 2.8 6.2E-05 25.5 3.6 28 440-467 3-30 (44)
337 PF13762 MNE1: Mitochondrial s 81.9 19 0.00041 28.8 9.0 91 51-144 26-128 (145)
338 PF11207 DUF2989: Protein of u 81.9 16 0.00035 31.0 9.0 73 212-285 123-198 (203)
339 PRK11619 lytic murein transgly 81.3 73 0.0016 33.2 38.3 224 244-471 255-511 (644)
340 PRK15180 Vi polysaccharide bio 81.1 12 0.00026 36.0 8.9 133 273-408 297-434 (831)
341 PF09477 Type_III_YscG: Bacter 80.8 21 0.00046 26.7 9.3 86 245-334 21-106 (116)
342 COG4455 ImpE Protein of avirul 80.3 6.3 0.00014 33.7 6.1 63 370-435 4-68 (273)
343 PF13174 TPR_6: Tetratricopept 80.3 2.8 6.2E-05 23.1 3.1 27 405-434 6-32 (33)
344 TIGR02561 HrpB1_HrpK type III 79.6 9.4 0.0002 30.5 6.6 69 341-411 20-89 (153)
345 PRK10941 hypothetical protein; 79.4 11 0.00024 34.0 7.9 64 401-467 183-246 (269)
346 smart00386 HAT HAT (Half-A-TPR 79.3 4.5 9.8E-05 22.1 3.8 30 416-445 1-30 (33)
347 KOG1586 Protein required for f 78.5 45 0.00098 29.1 15.9 19 341-359 164-182 (288)
348 KOG0687 26S proteasome regulat 78.2 56 0.0012 30.1 13.1 25 333-357 106-130 (393)
349 PF14853 Fis1_TPR_C: Fis1 C-te 78.1 15 0.00032 23.5 6.0 28 438-465 3-30 (53)
350 COG3947 Response regulator con 78.0 8.2 0.00018 34.6 6.4 59 402-463 282-340 (361)
351 COG2976 Uncharacterized protei 77.2 44 0.00095 28.3 15.2 87 240-326 99-189 (207)
352 smart00028 TPR Tetratricopepti 76.9 4.5 9.8E-05 21.4 3.4 28 437-464 2-29 (34)
353 KOG4570 Uncharacterized conser 76.9 38 0.00083 30.9 10.2 47 346-393 115-161 (418)
354 cd08819 CARD_MDA5_2 Caspase ac 76.7 23 0.00049 25.4 7.1 64 251-316 23-86 (88)
355 KOG0686 COP9 signalosome, subu 76.5 72 0.0016 30.4 14.2 61 164-224 150-216 (466)
356 COG4785 NlpI Lipoprotein NlpI, 75.9 51 0.0011 28.4 15.9 161 262-432 96-267 (297)
357 KOG2066 Vacuolar assembly/sort 75.4 1.1E+02 0.0024 31.9 26.1 124 64-194 394-535 (846)
358 COG5159 RPN6 26S proteasome re 75.3 60 0.0013 29.3 10.8 49 302-350 9-64 (421)
359 PF04190 DUF410: Protein of un 75.3 63 0.0014 29.1 17.8 120 79-210 4-136 (260)
360 PF10579 Rapsyn_N: Rapsyn N-te 75.2 9.5 0.00021 26.6 4.8 47 343-389 18-65 (80)
361 PF14853 Fis1_TPR_C: Fis1 C-te 75.1 7.4 0.00016 24.9 4.1 31 405-438 7-37 (53)
362 KOG3807 Predicted membrane pro 75.0 54 0.0012 30.2 10.7 53 303-357 282-337 (556)
363 COG2909 MalT ATP-dependent tra 74.4 1.2E+02 0.0027 32.1 26.7 48 277-324 470-525 (894)
364 KOG2422 Uncharacterized conser 74.2 60 0.0013 32.4 11.5 48 415-462 355-404 (665)
365 KOG0276 Vesicle coat complex C 73.7 43 0.00093 33.6 10.5 43 177-221 650-692 (794)
366 smart00028 TPR Tetratricopepti 73.7 6.4 0.00014 20.8 3.5 30 402-434 4-33 (34)
367 KOG1550 Extracellular protein 73.3 1.1E+02 0.0025 31.2 25.0 275 180-464 228-537 (552)
368 KOG2063 Vacuolar assembly/sort 72.9 1.1E+02 0.0024 32.9 14.0 28 197-224 506-533 (877)
369 KOG1308 Hsp70-interacting prot 72.9 2.7 5.9E-05 38.4 2.3 117 342-464 125-243 (377)
370 KOG4077 Cytochrome c oxidase, 72.8 25 0.00055 27.2 6.9 71 314-395 67-137 (149)
371 KOG2396 HAT (Half-A-TPR) repea 72.7 1E+02 0.0022 30.4 19.5 100 287-389 450-552 (568)
372 TIGR03504 FimV_Cterm FimV C-te 72.6 9.8 0.00021 23.2 4.0 24 302-325 5-28 (44)
373 PF06552 TOM20_plant: Plant sp 72.4 4.9 0.00011 33.3 3.5 67 394-468 63-139 (186)
374 PF07163 Pex26: Pex26 protein; 71.7 58 0.0012 29.4 9.9 57 202-258 90-146 (309)
375 COG4455 ImpE Protein of avirul 71.7 67 0.0014 27.8 12.4 77 299-376 4-81 (273)
376 PF09986 DUF2225: Uncharacteri 71.0 28 0.00061 30.2 8.1 49 420-468 143-197 (214)
377 PF06552 TOM20_plant: Plant sp 70.5 9.9 0.00022 31.5 4.8 91 312-403 7-117 (186)
378 PF08311 Mad3_BUB1_I: Mad3/BUB 70.4 37 0.0008 26.6 7.9 42 420-461 81-124 (126)
379 PF04910 Tcf25: Transcriptiona 70.4 1E+02 0.0022 29.4 18.1 98 161-258 37-167 (360)
380 PF10345 Cohesin_load: Cohesin 70.2 1.4E+02 0.0031 31.0 17.6 165 297-463 60-252 (608)
381 KOG4642 Chaperone-dependent E3 70.2 11 0.00024 32.8 5.2 118 340-463 19-144 (284)
382 KOG0545 Aryl-hydrocarbon recep 70.2 44 0.00095 29.4 8.7 59 407-468 238-296 (329)
383 KOG0376 Serine-threonine phosp 69.9 10 0.00023 36.5 5.5 81 379-462 16-98 (476)
384 PF11846 DUF3366: Domain of un 68.4 19 0.00042 30.6 6.6 37 394-433 139-175 (193)
385 PF10579 Rapsyn_N: Rapsyn N-te 68.3 15 0.00032 25.7 4.6 46 308-353 18-65 (80)
386 PF13762 MNE1: Mitochondrial s 67.6 63 0.0014 25.9 11.0 81 167-247 42-132 (145)
387 PF09670 Cas_Cas02710: CRISPR- 67.5 1E+02 0.0023 29.6 11.9 18 308-325 143-160 (379)
388 PRK09687 putative lyase; Provi 67.4 1E+02 0.0022 28.2 27.0 138 193-342 140-278 (280)
389 PHA02875 ankyrin repeat protei 66.8 99 0.0021 30.1 12.1 69 48-119 16-88 (413)
390 PF10366 Vps39_1: Vacuolar sor 64.8 37 0.00079 25.7 6.6 43 415-465 26-68 (108)
391 PF11846 DUF3366: Domain of un 64.8 27 0.00059 29.7 6.8 51 343-393 120-170 (193)
392 KOG0551 Hsp90 co-chaperone CNS 64.7 26 0.00057 32.2 6.6 91 369-462 83-179 (390)
393 PF13929 mRNA_stabil: mRNA sta 64.6 1.1E+02 0.0024 27.8 18.3 113 281-393 144-264 (292)
394 PF08424 NRDE-2: NRDE-2, neces 63.2 1.3E+02 0.0029 28.1 14.7 118 312-432 47-184 (321)
395 PF07163 Pex26: Pex26 protein; 62.6 1.2E+02 0.0025 27.5 10.0 52 272-323 90-145 (309)
396 COG4976 Predicted methyltransf 62.2 17 0.00037 31.5 4.8 54 415-468 8-61 (287)
397 PF04190 DUF410: Protein of un 61.6 1.2E+02 0.0027 27.3 17.9 123 222-359 41-169 (260)
398 KOG4279 Serine/threonine prote 61.5 2E+02 0.0044 30.0 12.5 182 248-435 181-399 (1226)
399 PF10345 Cohesin_load: Cohesin 60.2 2.2E+02 0.0047 29.6 29.4 50 342-391 372-428 (608)
400 PF06957 COPI_C: Coatomer (COP 60.0 1.2E+02 0.0027 29.4 10.6 39 394-435 293-333 (422)
401 KOG4642 Chaperone-dependent E3 59.2 1.3E+02 0.0028 26.6 9.8 99 306-409 20-127 (284)
402 PF12862 Apc5: Anaphase-promot 58.7 35 0.00076 24.9 5.6 50 415-464 11-69 (94)
403 PRK13800 putative oxidoreducta 58.2 2.9E+02 0.0063 30.4 29.1 160 186-359 719-880 (897)
404 KOG3824 Huntingtin interacting 57.7 19 0.00041 32.6 4.5 47 415-461 129-175 (472)
405 KOG4077 Cytochrome c oxidase, 57.5 83 0.0018 24.5 7.1 45 215-259 69-113 (149)
406 PF11848 DUF3368: Domain of un 57.3 45 0.00097 20.7 5.2 34 205-238 12-45 (48)
407 KOG2297 Predicted translation 56.9 1.3E+02 0.0027 27.6 9.3 19 128-146 162-181 (412)
408 COG3947 Response regulator con 56.6 1.6E+02 0.0034 26.9 12.7 57 199-256 283-339 (361)
409 PRK10564 maltose regulon perip 56.3 24 0.00053 32.0 5.0 43 193-235 254-297 (303)
410 PF11848 DUF3368: Domain of un 56.2 47 0.001 20.7 5.3 34 306-339 12-45 (48)
411 PF14689 SPOB_a: Sensor_kinase 55.8 21 0.00045 23.7 3.5 26 197-222 25-50 (62)
412 PRK12798 chemotaxis protein; R 55.5 2E+02 0.0044 27.8 20.6 150 278-432 125-287 (421)
413 PF14863 Alkyl_sulf_dimr: Alky 54.7 57 0.0012 26.1 6.4 62 384-451 58-119 (141)
414 PRK10564 maltose regulon perip 54.5 20 0.00043 32.6 4.2 45 94-138 254-299 (303)
415 KOG4507 Uncharacterized conser 54.3 38 0.00082 33.8 6.2 97 345-447 621-721 (886)
416 cd00280 TRFH Telomeric Repeat 54.1 91 0.002 26.2 7.4 20 340-359 120-139 (200)
417 PF12862 Apc5: Anaphase-promot 53.7 69 0.0015 23.3 6.5 18 415-432 54-71 (94)
418 PF13934 ELYS: Nuclear pore co 53.6 1.6E+02 0.0034 25.9 11.8 118 62-217 76-198 (226)
419 smart00777 Mad3_BUB1_I Mad3/BU 52.6 90 0.002 24.4 7.0 40 421-460 82-123 (125)
420 COG4259 Uncharacterized protei 52.5 53 0.0011 24.2 5.2 54 418-473 53-107 (121)
421 cd08819 CARD_MDA5_2 Caspase ac 52.1 87 0.0019 22.5 6.4 66 46-116 21-86 (88)
422 KOG1308 Hsp70-interacting prot 51.4 16 0.00034 33.7 3.1 82 308-393 126-208 (377)
423 PF14689 SPOB_a: Sensor_kinase 51.2 26 0.00056 23.3 3.4 45 418-463 6-50 (62)
424 COG5191 Uncharacterized conser 50.9 26 0.00056 31.9 4.3 81 362-445 102-185 (435)
425 KOG4507 Uncharacterized conser 50.9 61 0.0013 32.5 7.0 135 328-468 568-708 (886)
426 PF08311 Mad3_BUB1_I: Mad3/BUB 50.2 1.2E+02 0.0026 23.7 8.3 60 130-189 65-124 (126)
427 PRK10941 hypothetical protein; 50.1 2E+02 0.0043 26.1 10.3 75 299-375 184-259 (269)
428 PRK13342 recombination factor 48.4 2.7E+02 0.0059 27.2 13.9 47 197-243 229-278 (413)
429 KOG0292 Vesicle coat complex C 48.2 2.4E+02 0.0053 30.1 10.9 132 274-432 652-783 (1202)
430 PF09797 NatB_MDM20: N-acetylt 47.5 42 0.00091 32.1 5.6 62 401-462 182-243 (365)
431 KOG1498 26S proteasome regulat 47.3 2.6E+02 0.0057 26.7 16.0 55 339-393 179-238 (439)
432 PF10255 Paf67: RNA polymerase 46.8 1.1E+02 0.0025 29.5 8.1 22 372-393 127-148 (404)
433 PF11817 Foie-gras_1: Foie gra 46.8 84 0.0018 28.1 7.1 57 200-256 183-244 (247)
434 PRK13800 putative oxidoreducta 46.5 4.4E+02 0.0095 29.1 25.7 258 182-464 622-880 (897)
435 PF11663 Toxin_YhaV: Toxin wit 46.5 28 0.0006 27.3 3.3 32 108-141 107-138 (140)
436 KOG0890 Protein kinase of the 45.7 6.5E+02 0.014 30.7 24.2 148 102-254 1389-1542(2382)
437 PF10255 Paf67: RNA polymerase 45.0 1.3E+02 0.0028 29.1 8.2 22 270-291 127-148 (404)
438 KOG0687 26S proteasome regulat 44.4 2.7E+02 0.0058 26.0 12.1 26 166-191 106-131 (393)
439 KOG0292 Vesicle coat complex C 44.1 34 0.00073 35.9 4.4 73 341-429 653-725 (1202)
440 PF14669 Asp_Glu_race_2: Putat 44.1 2E+02 0.0044 24.4 14.8 90 293-393 104-207 (233)
441 KOG0376 Serine-threonine phosp 43.7 46 0.001 32.4 5.0 101 272-377 11-115 (476)
442 COG0735 Fur Fe2+/Zn2+ uptake r 43.5 1.5E+02 0.0032 23.9 7.3 62 217-279 8-69 (145)
443 COG4976 Predicted methyltransf 43.3 39 0.00083 29.4 4.0 54 342-397 6-60 (287)
444 smart00777 Mad3_BUB1_I Mad3/BU 42.4 1.6E+02 0.0036 22.9 7.9 43 145-188 80-123 (125)
445 KOG1463 26S proteasome regulat 42.1 3E+02 0.0065 25.8 9.9 90 371-462 52-154 (411)
446 PF08424 NRDE-2: NRDE-2, neces 42.0 3E+02 0.0064 25.8 15.2 119 347-467 47-185 (321)
447 COG0790 FOG: TPR repeat, SEL1 41.3 2.8E+02 0.0061 25.3 19.8 151 311-468 92-269 (292)
448 KOG1464 COP9 signalosome, subu 41.3 2.7E+02 0.0058 25.1 18.3 153 207-359 39-219 (440)
449 KOG4567 GTPase-activating prot 41.2 2.9E+02 0.0063 25.5 9.8 72 316-393 263-344 (370)
450 KOG3807 Predicted membrane pro 41.2 3E+02 0.0065 25.6 12.2 57 337-393 281-337 (556)
451 PF12069 DUF3549: Protein of u 40.2 3.2E+02 0.007 25.7 16.3 97 168-267 170-267 (340)
452 PRK11639 zinc uptake transcrip 40.2 1.3E+02 0.0028 25.0 6.8 38 345-383 39-76 (169)
453 COG0735 Fur Fe2+/Zn2+ uptake r 39.7 1.8E+02 0.0039 23.4 7.3 43 302-344 26-68 (145)
454 COG5108 RPO41 Mitochondrial DN 39.5 1.9E+02 0.004 29.8 8.4 47 301-347 33-81 (1117)
455 COG5187 RPN7 26S proteasome re 39.5 3E+02 0.0065 25.1 11.6 29 331-359 115-143 (412)
456 PF11663 Toxin_YhaV: Toxin wit 39.4 36 0.00077 26.8 2.9 32 307-340 106-137 (140)
457 KOG2063 Vacuolar assembly/sort 38.9 5.5E+02 0.012 28.0 22.9 112 166-277 506-638 (877)
458 PF10366 Vps39_1: Vacuolar sor 37.9 1.8E+02 0.0038 22.0 8.5 29 96-124 39-67 (108)
459 KOG1463 26S proteasome regulat 37.8 3.5E+02 0.0076 25.4 17.6 163 270-433 133-318 (411)
460 PRK09857 putative transposase; 36.8 2.2E+02 0.0047 26.3 8.2 66 402-470 209-274 (292)
461 KOG0686 COP9 signalosome, subu 36.8 4E+02 0.0086 25.8 14.3 56 268-323 153-214 (466)
462 KOG4814 Uncharacterized conser 36.7 3.5E+02 0.0076 27.8 9.7 85 377-464 364-456 (872)
463 KOG2659 LisH motif-containing 36.6 2.9E+02 0.0064 24.2 8.9 55 337-392 70-128 (228)
464 KOG2471 TPR repeat-containing 36.6 4.4E+02 0.0096 26.2 14.5 115 306-421 250-391 (696)
465 PF14044 NETI: NETI protein 36.5 26 0.00055 22.6 1.5 18 500-517 8-25 (57)
466 KOG4279 Serine/threonine prote 36.4 1.6E+02 0.0034 30.8 7.5 26 299-324 204-229 (1226)
467 PHA02875 ankyrin repeat protei 36.2 4.1E+02 0.009 25.8 15.8 54 274-331 174-230 (413)
468 cd07153 Fur_like Ferric uptake 36.0 92 0.002 23.7 5.0 45 302-346 6-50 (116)
469 PF11768 DUF3312: Protein of u 36.0 4.7E+02 0.01 26.5 10.5 126 271-423 414-544 (545)
470 PF09454 Vps23_core: Vps23 cor 35.9 1.1E+02 0.0024 20.6 4.6 48 294-342 6-53 (65)
471 PRK13342 recombination factor 35.9 4.3E+02 0.0092 25.8 18.8 96 227-340 173-274 (413)
472 PF12968 DUF3856: Domain of Un 35.7 2.1E+02 0.0045 22.2 9.3 68 367-462 55-126 (144)
473 PF04090 RNA_pol_I_TF: RNA pol 35.7 2.8E+02 0.0062 23.7 10.0 36 296-332 41-76 (199)
474 KOG4567 GTPase-activating prot 35.2 3.7E+02 0.008 24.9 9.7 43 251-293 264-306 (370)
475 KOG2659 LisH motif-containing 34.4 3.2E+02 0.0069 24.0 9.3 95 327-427 22-128 (228)
476 PF11817 Foie-gras_1: Foie gra 34.3 1.5E+02 0.0032 26.5 6.7 19 339-357 186-204 (247)
477 PF12926 MOZART2: Mitotic-spin 34.3 1.8E+02 0.0038 20.9 7.4 41 251-291 29-69 (88)
478 cd08326 CARD_CASP9 Caspase act 34.1 1.8E+02 0.0038 20.8 6.2 39 277-315 42-80 (84)
479 KOG3364 Membrane protein invol 33.9 2.4E+02 0.0053 22.4 9.1 71 328-398 29-103 (149)
480 PF15015 NYD-SP12_N: Spermatog 33.6 2.5E+02 0.0054 27.2 7.9 27 371-397 232-259 (569)
481 PF01475 FUR: Ferric uptake re 33.5 80 0.0017 24.3 4.3 45 301-345 12-56 (120)
482 PF02184 HAT: HAT (Half-A-TPR) 33.3 94 0.002 17.5 3.6 26 417-443 2-27 (32)
483 PF15297 CKAP2_C: Cytoskeleton 32.7 2E+02 0.0043 27.0 7.1 49 382-433 118-171 (353)
484 PF11123 DNA_Packaging_2: DNA 32.2 1.6E+02 0.0035 20.3 4.7 30 80-109 12-44 (82)
485 COG2912 Uncharacterized conser 32.2 1.6E+02 0.0035 26.5 6.3 56 407-465 189-244 (269)
486 PF15469 Sec5: Exocyst complex 31.7 3.1E+02 0.0067 23.0 9.1 26 450-475 153-178 (182)
487 cd08332 CARD_CASP2 Caspase act 31.0 1.9E+02 0.0042 20.9 5.6 60 46-112 22-81 (90)
488 PRK09169 hypothetical protein; 30.7 1.1E+03 0.024 29.0 37.5 397 60-462 202-692 (2316)
489 COG5159 RPN6 26S proteasome re 30.6 4.2E+02 0.0092 24.2 20.3 33 103-135 10-42 (421)
490 PF10475 DUF2450: Protein of u 30.3 2.7E+02 0.0058 25.7 7.8 50 172-223 106-155 (291)
491 PF14561 TPR_20: Tetratricopep 30.0 2.2E+02 0.0047 20.6 7.4 51 400-453 23-75 (90)
492 PF09454 Vps23_core: Vps23 cor 29.8 1.6E+02 0.0035 19.8 4.5 48 193-241 6-53 (65)
493 KOG2422 Uncharacterized conser 29.6 6.2E+02 0.013 25.8 14.1 79 202-280 349-431 (665)
494 cd08326 CARD_CASP9 Caspase act 28.9 2.2E+02 0.0047 20.4 6.0 39 176-214 42-80 (84)
495 PF09670 Cas_Cas02710: CRISPR- 28.9 5.4E+02 0.012 24.8 12.4 55 204-259 140-198 (379)
496 KOG0545 Aryl-hydrocarbon recep 28.8 4.2E+02 0.0092 23.7 8.7 64 333-398 232-296 (329)
497 PRK09169 hypothetical protein; 28.8 1.2E+03 0.025 28.8 39.8 433 29-464 245-778 (2316)
498 PF00244 14-3-3: 14-3-3 protei 28.1 4.3E+02 0.0093 23.4 10.6 58 200-257 6-64 (236)
499 KOG2396 HAT (Half-A-TPR) repea 27.8 6.3E+02 0.014 25.3 30.8 241 213-463 300-557 (568)
500 PF06135 DUF965: Bacterial pro 27.6 1E+02 0.0022 21.6 3.3 25 493-517 12-36 (79)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.7e-76 Score=607.19 Aligned_cols=503 Identities=30% Similarity=0.518 Sum_probs=482.9
Q ss_pred chhhhhhhhhccccCCCCCCCCCcccHHHHHHhccCchHH---HHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHH
Q 048578 7 PNSQLTHFTNSANSHKNSNTATKSHHHLPLLQKCTHLVQF---KQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAY 83 (519)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 83 (519)
+..++..|..... ..+..||..||+.++.+|++.++. .+++..|.+.|+.||..+++.|+++|++. |++++
T Consensus 103 ~~~Al~~f~~m~~---~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~---g~~~~ 176 (697)
T PLN03081 103 HREALELFEILEA---GCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC---GMLID 176 (697)
T ss_pred HHHHHHHHHHHHh---cCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcC---CCHHH
Confidence 3455555555432 234679999999999999766555 89999999999999999999999999999 99999
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccc---hHHHHHHHHHhCCC
Q 048578 84 AHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQ---VKGVHSLVVKSKDF 160 (519)
Q Consensus 84 A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~~~~~~~~~~~~ 160 (519)
|.++|++|.+||..+||.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|+..+. ..+++..+.+.+ +
T Consensus 177 A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g-~ 255 (697)
T PLN03081 177 ARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG-V 255 (697)
T ss_pred HHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhC-C
Confidence 999999999999999999999999999999999999999999999999999999999999988 677777888888 9
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048578 161 NSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSAC 240 (519)
Q Consensus 161 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 240 (519)
.++..++++|+++|++.|++++|.++|+.|..+|+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|
T Consensus 256 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~ 335 (697)
T PLN03081 256 VGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF 335 (697)
T ss_pred CccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 048578 241 ANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFW 320 (519)
Q Consensus 241 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 320 (519)
++.|+++.|.+++..+.+.|++++..++++|+++|++.|++++|.++|++|.++|..+||+||.+|++.|+.++|+++|+
T Consensus 336 ~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~ 415 (697)
T PLN03081 336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFE 415 (697)
T ss_pred HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHH
Q 048578 321 QMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAV 400 (519)
Q Consensus 321 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~ 400 (519)
+|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|+.++++|++.|++++|.+++++|++.|+..
T Consensus 416 ~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~ 495 (697)
T PLN03081 416 RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVN 495 (697)
T ss_pred HHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHH
Confidence 99999999999999999999999999999999999999878999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccEEEECC
Q 048578 401 LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEIND 480 (519)
Q Consensus 401 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 480 (519)
+|++++.+|.. +|+++.|..+++++.+.+|++...|..++.+|.+.|+|++|.+++++|+++|+++.|+++|+++.+
T Consensus 496 ~~~~Ll~a~~~---~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~ 572 (697)
T PLN03081 496 MWAALLTACRI---HKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKK 572 (697)
T ss_pred HHHHHHHHHHH---cCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECC
Confidence 99999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCChhHHHHHHHHHHHHHHhcccCCCCC
Q 048578 481 VVHEFMVGDGRHPCSEEIYSMLEYVAISLREECYAARMP 519 (519)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 519 (519)
.++.|.++...||+.+++++.+.++...|++.||.|||.
T Consensus 573 ~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 573 QDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred eEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 999999999999999999999999999999999999973
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.8e-74 Score=604.36 Aligned_cols=490 Identities=32% Similarity=0.593 Sum_probs=476.2
Q ss_pred CCCCCCCCCcccHHHHHHhccCchHH---HHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCCCCcc
Q 048578 21 HKNSNTATKSHHHLPLLQKCTHLVQF---KQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTF 97 (519)
Q Consensus 21 ~~~~~~~p~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 97 (519)
|...|++||..||+.++.+|++.++. ++++..+.+.|+.||..+|++|+.+|+++ |++++|.++|++|..||..
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~---g~~~~A~~vf~~m~~~d~~ 355 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL---GSWGEAEKVFSRMETKDAV 355 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhc---CCHHHHHHHHhhCCCCCee
Confidence 44589999999999999999765554 89999999999999999999999999999 9999999999999999999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccc---hHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 048578 98 AFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQ---VKGVHSLVVKSKDFNSVIHSLTRLITFY 174 (519)
Q Consensus 98 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 174 (519)
+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+ +.++++.+.+.+ ..|+..++++|+++|
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g-~~~~~~~~n~Li~~y 434 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG-LISYVVVANALIEMY 434 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 777788888888 999999999999999
Q ss_pred HhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 048578 175 CNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHE 254 (519)
Q Consensus 175 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 254 (519)
++.|++++|.++|++|.++|..+|+++|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++.
T Consensus 435 ~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~ 513 (857)
T PLN03077 435 SKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHA 513 (857)
T ss_pred HHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHH
Confidence 9999999999999999999999999999999999999999999999986 599999999999999999999999999999
Q ss_pred HHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 048578 255 FVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTL 334 (519)
Q Consensus 255 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 334 (519)
.+.+.|+.++..++++|+++|++.|++++|.++|+.+ .+|..+|+++|.+|++.|+.++|+++|++|.+.|+.||..||
T Consensus 514 ~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~ 592 (857)
T PLN03077 514 HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF 592 (857)
T ss_pred HHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccH
Confidence 9999999999999999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccC
Q 048578 335 IAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADD 414 (519)
Q Consensus 335 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 414 (519)
+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++|+++||..+|++|+.+|..
T Consensus 593 ~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~--- 669 (857)
T PLN03077 593 ISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRI--- 669 (857)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---
Confidence 99999999999999999999999966899999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCCC
Q 048578 415 GANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPC 494 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (519)
+++.+.++...+++.+++|+++..|..++++|...|+|++|.++.+.|+++|++++|++|||++++.++.|.++...||+
T Consensus 670 ~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~ 749 (857)
T PLN03077 670 HRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQ 749 (857)
T ss_pred cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhcccCCCCC
Q 048578 495 SEEIYSMLEYVAISLREECYAARMP 519 (519)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~p~~~ 519 (519)
.++|+..++++...|++.||.|||.
T Consensus 750 ~~~i~~~l~~l~~~~~~~g~~~~~~ 774 (857)
T PLN03077 750 IKEINTVLEGFYEKMKASGLAGSES 774 (857)
T ss_pred hHHHHHHHHHHHHHHHhCCcCCCcc
Confidence 9999999999999999999999973
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.4e-65 Score=538.51 Aligned_cols=466 Identities=27% Similarity=0.417 Sum_probs=435.5
Q ss_pred CCCCCCCCCcccHHHHHHhccCchHH---HHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCCCCcc
Q 048578 21 HKNSNTATKSHHHLPLLQKCTHLVQF---KQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTF 97 (519)
Q Consensus 21 ~~~~~~~p~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 97 (519)
|...|++||..||+.+|++|+..++. .+++..+.+.|+.|++.++++|+.+|+++ |++++|.++|++|+.||..
T Consensus 178 M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~---g~~~~A~~lf~~m~~~d~~ 254 (857)
T PLN03077 178 MLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKC---GDVVSARLVFDRMPRRDCI 254 (857)
T ss_pred HHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcC---CCHHHHHHHHhcCCCCCcc
Confidence 44479999999999999999876655 89999999999999999999999999999 9999999999999999999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccc---hHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 048578 98 AFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQ---VKGVHSLVVKSKDFNSVIHSLTRLITFY 174 (519)
Q Consensus 98 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 174 (519)
+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+ +.+++..+.+.+ +.|+..+|++++.+|
T Consensus 255 s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g-~~~d~~~~n~Li~~y 333 (857)
T PLN03077 255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG-FAVDVSVCNSLIQMY 333 (857)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC-CccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998 788888888888 999999999999999
Q ss_pred HhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 048578 175 CNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHE 254 (519)
Q Consensus 175 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 254 (519)
++.|++++|.++|++|..||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++
T Consensus 334 ~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~ 413 (857)
T PLN03077 334 LSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413 (857)
T ss_pred HhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 048578 255 FVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTL 334 (519)
Q Consensus 255 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 334 (519)
.+.+.|..++..++++|+.+|++.|++++|.++|++|.++|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||
T Consensus 414 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~ 492 (857)
T PLN03077 414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTL 492 (857)
T ss_pred HHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 589999999
Q ss_pred HHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccC
Q 048578 335 IAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADD 414 (519)
Q Consensus 335 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 414 (519)
+.++.+|++.|+++.+.+++..+.+ .|+.++..+++.|+++|+++|++++|.++|+.+ .||..+|+++|.+|..
T Consensus 493 ~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~--- 566 (857)
T PLN03077 493 IAALSACARIGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVA--- 566 (857)
T ss_pred HHHHHHHhhhchHHHhHHHHHHHHH-hCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHH---
Confidence 9999999999999999999999998 599999999999999999999999999999998 7899999999999999
Q ss_pred CCCHHHHHHHHHHHHhhC-CCCCchHHHHHHHHHhcCCchHHHHHHHHHH-hCCCccCCcccEEEECCEEEEEEeCCCCC
Q 048578 415 GANVELAEIAMERLIKLE-PFNDGNYVLMSNIYAAKAQWDDAGKMRRLMK-ERNIVKNPGCSVIEINDVVHEFMVGDGRH 492 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (519)
.|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|++++|.++|+.|. +.|+.|+..++.. ++....+.
T Consensus 567 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~--------lv~~l~r~ 638 (857)
T PLN03077 567 HGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC--------VVDLLGRA 638 (857)
T ss_pred cCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH--------HHHHHHhC
Confidence 999999999999998876 4468899999999999999999999999998 6788887665532 22344567
Q ss_pred CChhHHHHHHHHH
Q 048578 493 PCSEEIYSMLEYV 505 (519)
Q Consensus 493 ~~~~~~~~~~~~~ 505 (519)
+..+++.+.+++|
T Consensus 639 G~~~eA~~~~~~m 651 (857)
T PLN03077 639 GKLTEAYNFINKM 651 (857)
T ss_pred CCHHHHHHHHHHC
Confidence 7788888887776
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.9e-60 Score=490.81 Aligned_cols=440 Identities=17% Similarity=0.225 Sum_probs=407.2
Q ss_pred CCCcccHHHHHHhc---cCchHHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCCCCcchHHHH
Q 048578 27 ATKSHHHLPLLQKC---THLVQFKQVHAQIIKASF-DNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTV 102 (519)
Q Consensus 27 ~p~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 102 (519)
+++...|..++..+ ++..++.++++.|.+.|+ +++..+++.++..|.+. |.+++|..+|+.|..||..+|+.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~---g~~~eAl~lf~~M~~pd~~Tyn~L 443 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQ---RAVKEAFRFAKLIRNPTLSTFNML 443 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHC---CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 45566777777776 677788999999999995 56788888999999998 999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccc---hHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCC
Q 048578 103 IRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQ---VKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGD 179 (519)
Q Consensus 103 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 179 (519)
|.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|+ +.++++.|.+.+ +.|+..+|+.+|.+|++.|+
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-v~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-VEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999 555666667776 89999999999999999999
Q ss_pred hHHHHHHHhcCCC----CchhHHHHHHHHHHHcCChhHHHHHHHHHHh--CCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 048578 180 VKSAQLLFDQMTE----KNVVTWTAMINGHVKQKNYREGIDLFRKMRD--SGVEVNELTLVSVLSACANLGASELGKWVH 253 (519)
Q Consensus 180 ~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 253 (519)
+++|.++|+.|.+ ||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|+++.|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999964 8999999999999999999999999999986 579999999999999999999999999999
Q ss_pred HHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 048578 254 EFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVL----EKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKP 329 (519)
Q Consensus 254 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 329 (519)
+.|.+.|++|+..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.+++++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999995 4789999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHH
Q 048578 330 DDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM---PMEPNAVLWGSLL 406 (519)
Q Consensus 330 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~p~~~~~~~ll 406 (519)
|..+|+.+|.+|++.|++++|.++|++|.+ .++.||..+|+.||.+|++.|++++|.++|++| |+.||..||+.++
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~-~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKS-IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 999999999999999999999999999998 599999999999999999999999999999999 8999999999999
Q ss_pred HHHccccCCCCHHHHHHHHHHHHhhC-CCCCchHHHHHHHHH----hcC-------------------CchHHHHHHHHH
Q 048578 407 TACASADDGANVELAEIAMERLIKLE-PFNDGNYVLMSNIYA----AKA-------------------QWDDAGKMRRLM 462 (519)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~----~~g-------------------~~~~A~~~~~~m 462 (519)
.+|.+ .|+++.|.+++++|.+.+ .+|..+|+.++..+. +++ ..++|..+|++|
T Consensus 762 ~a~~k---~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM 838 (1060)
T PLN03218 762 VASER---KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRET 838 (1060)
T ss_pred HHHHH---CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHH
Confidence 99999 999999999999999987 446788988876643 222 236799999999
Q ss_pred HhCCCccCCccc
Q 048578 463 KERNIVKNPGCS 474 (519)
Q Consensus 463 ~~~~~~~~~~~~ 474 (519)
.+.|+.|+..++
T Consensus 839 ~~~Gi~Pd~~T~ 850 (1060)
T PLN03218 839 ISAGTLPTMEVL 850 (1060)
T ss_pred HHCCCCCCHHHH
Confidence 999999996544
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.8e-60 Score=487.64 Aligned_cols=437 Identities=17% Similarity=0.238 Sum_probs=400.7
Q ss_pred CCcccHHHHHHhccCchHH---HHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCC----CCCcchHH
Q 048578 28 TKSHHHLPLLQKCTHLVQF---KQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQII----NPSTFAFN 100 (519)
Q Consensus 28 p~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~ 100 (519)
|+..||+.+|.+|++.++. .++++.|.+.|+.||..+|+.|+.+|++. |++++|.++|++|. .||..+|+
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~---G~vd~A~~vf~eM~~~Gv~PdvvTyn 511 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS---GKVDAMFEVFHEMVNAGVEANVHTFG 511 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC---cCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 8999999999999655554 88999999999999999999999999999 99999999999995 58999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHh----CCCCCchhHHHHHHHHHHh
Q 048578 101 TVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKS----KDFNSVIHSLTRLITFYCN 176 (519)
Q Consensus 101 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~ 176 (519)
.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+++.+.+.+. .++.|+..+|++++.+|++
T Consensus 512 aLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k 591 (1060)
T PLN03218 512 ALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999955555544332 2378999999999999999
Q ss_pred cCChHHHHHHHhcCCC----CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 048578 177 FGDVKSAQLLFDQMTE----KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWV 252 (519)
Q Consensus 177 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 252 (519)
.|++++|.++|+.|.+ |+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999999976 678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhc----CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 048578 253 HEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIV----LEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIK 328 (519)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 328 (519)
++.|.+.|+.|+..+|++++.+|++.|++++|.++|++| ..||..+|+.||.+|++.|++++|.++|++|.+.|+.
T Consensus 672 ~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~ 751 (1060)
T PLN03218 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999 4689999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHh----c-------------------CChHH
Q 048578 329 PDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCR----A-------------------RLLDE 385 (519)
Q Consensus 329 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------~~~~~ 385 (519)
||..||+.++.+|++.|+++.|.++|..|.+ .|+.||..+|+.++..|.+ + +..++
T Consensus 752 Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~ 830 (1060)
T PLN03218 752 PNTITYSILLVASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSW 830 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHH
Confidence 9999999999999999999999999999998 5999999999999876432 1 12467
Q ss_pred HHHHHHhC---CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhC-CCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 048578 386 AYEVIRNM---PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLE-PFNDGNYVLMSNIYAAKAQWDDAGKMRRL 461 (519)
Q Consensus 386 A~~~~~~~---~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (519)
|..+|++| |+.||..||+.++.++.. .+..+.+..+++.+.... +.+..+|+.++.++.+. .++|..++++
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~---~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~e 905 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQL---PHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEE 905 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcc---cccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHH
Confidence 99999999 999999999999977767 788899988888766443 55788999999988432 3689999999
Q ss_pred HHhCCCccCCcc
Q 048578 462 MKERNIVKNPGC 473 (519)
Q Consensus 462 m~~~~~~~~~~~ 473 (519)
|...|+.|+...
T Consensus 906 m~~~Gi~p~~~~ 917 (1060)
T PLN03218 906 AASLGVVPSVSF 917 (1060)
T ss_pred HHHcCCCCCccc
Confidence 999999998763
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-53 Score=439.43 Aligned_cols=399 Identities=27% Similarity=0.414 Sum_probs=372.7
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCcchHHHHHHHHcCccc---hHHHHHHHHHhCCCCCchhHHH
Q 048578 93 NPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNG-LDPDSFTYPILLKACGDLRQ---VKGVHSLVVKSKDFNSVIHSLT 168 (519)
Q Consensus 93 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 168 (519)
.++..+|+.+|.++.+.|++++|+++|++|...+ +.||..+|+.++.+|++.++ +.+++..+.+.+ +.|+..+|+
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n 162 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMN 162 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHH
Confidence 3577799999999999999999999999999864 78999999999999999888 678888888888 999999999
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH
Q 048578 169 RLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASEL 248 (519)
Q Consensus 169 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 248 (519)
.++.+|++.|++++|.++|++|.+||..+||+++.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|++.|..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 048578 249 GKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIK 328 (519)
Q Consensus 249 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 328 (519)
+.+++..+.+.|+.++..++++|+.+|++.|++++|.++|++|.++|..+|+.++.+|++.|++++|.++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048578 329 PDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTA 408 (519)
Q Consensus 329 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~ 408 (519)
||..||+.++.+|++.|++++|.+++..+.+ .|+.||..+|+.|+.+|+++|++++|.++|++|. +||..+|+++|.+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~-~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~ 400 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIR-TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAG 400 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHH-hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHH
Confidence 9999999999999999999999999999999 5999999999999999999999999999999996 5899999999999
Q ss_pred HccccCCCCHHHHHHHHHHHHhhC-CCCCchHHHHHHHHHhcCCchHHHHHHHHHHh-CCCccCCcccEEEECCEEEEEE
Q 048578 409 CASADDGANVELAEIAMERLIKLE-PFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE-RNIVKNPGCSVIEINDVVHEFM 486 (519)
Q Consensus 409 ~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~~~~~~~~~~~ 486 (519)
|++ .|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|++++|.++|+.|.+ .|+.|+...+.. ++
T Consensus 401 y~~---~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~--------li 469 (697)
T PLN03081 401 YGN---HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC--------MI 469 (697)
T ss_pred HHH---cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh--------HH
Confidence 999 999999999999999877 44689999999999999999999999999976 689887665532 23
Q ss_pred eCCCCCCChhHHHHHHHHH
Q 048578 487 VGDGRHPCSEEIYSMLEYV 505 (519)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~ 505 (519)
....+.+..+++.++++++
T Consensus 470 ~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred HHHHhcCCHHHHHHHHHHC
Confidence 3455677788887776543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=8.1e-26 Score=243.60 Aligned_cols=442 Identities=13% Similarity=0.068 Sum_probs=331.3
Q ss_pred cCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHH
Q 048578 41 THLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN---PSTFAFNTVIRGYAEAGLGHRGIQ 117 (519)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~ 117 (519)
.....+..+++.+.+. .+.++.++..+...+... |++++|...|+++.+ .+...+..+...+...|++++|.+
T Consensus 445 ~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 445 GQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGK---GDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred CCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhC---CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 3334444555555433 345666777777777777 788888887777632 344556667777777888888888
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCC-CCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---C
Q 048578 118 LYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDF-NSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE---K 193 (519)
Q Consensus 118 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~ 193 (519)
.|+++.+.+ +.+..++..+...+...|+.+++...+.+.-.. +.+...+..++..|...|++++|..+++.+.. .
T Consensus 521 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 599 (899)
T TIGR02917 521 RFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPD 599 (899)
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 888877643 234556667777777777766666655543222 33456677778888888888888888887754 4
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHH
Q 048578 194 NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTD 273 (519)
Q Consensus 194 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 273 (519)
+...|..+..++...|++++|...|+++.+.. +.+...+..+..++.+.|++++|...++.+.+.. +.+...+..++.
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 677 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQ 677 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 56678888888888888888888888887653 3356677777888888888888888888887764 556777888888
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 048578 274 MYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKG 350 (519)
Q Consensus 274 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 350 (519)
.+...|++++|.++++.+.+ .+...+..+...+...|++++|...|+++... .|+..++..++.++.+.|++++|
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHH
Confidence 88888888888888888754 25566777888888999999999999998875 45557777888889999999999
Q ss_pred HHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHH
Q 048578 351 KEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERL 428 (519)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~ 428 (519)
...++.+.+ ..+.+...+..+...|...|++++|.+.|+++ ...| +...+..+...+.. .|+ ++|...++++
T Consensus 756 ~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 756 VKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE---LKD-PRALEYAEKA 829 (899)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh---cCc-HHHHHHHHHH
Confidence 999999887 45667888889999999999999999999998 3344 56788888888888 788 7899999999
Q ss_pred HhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCCChhHHHHHHHHHH
Q 048578 429 IKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVA 506 (519)
Q Consensus 429 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (519)
.+..|+++..+..++.++...|++++|.++++++.+.+.. ++.+.. .+.......++.+++.+.++.+.
T Consensus 830 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~--------~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 830 LKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRY--------HLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHH--------HHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999987764 333321 01222334677788888877763
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=1.9e-25 Score=240.71 Aligned_cols=422 Identities=13% Similarity=0.059 Sum_probs=356.6
Q ss_pred CcccHHHHHHhc---cCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCC---CCcchHHHH
Q 048578 29 KSHHHLPLLQKC---THLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN---PSTFAFNTV 102 (519)
Q Consensus 29 ~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l 102 (519)
+..++..+-..+ .+...+...++.+.+.. +.+...+..+...+... |++++|.+.|+.+.. .+..++..+
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~l 539 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQE---GNPDDAIQRFEKVLTIDPKNLRAILAL 539 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 444454444443 55556677777777654 44566777888888888 999999999998843 466788899
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCC-CCCchhHHHHHHHHHHhcCChH
Q 048578 103 IRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKD-FNSVIHSLTRLITFYCNFGDVK 181 (519)
Q Consensus 103 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~ 181 (519)
...+.+.|++++|...++++.+.+ +.+...+..+...+...|+.+++...+.+... .+.+...+..+..+|...|+++
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 618 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLN 618 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999998854 34556777888889999997777776655432 3456788999999999999999
Q ss_pred HHHHHHhcCCC---CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 048578 182 SAQLLFDQMTE---KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNK 258 (519)
Q Consensus 182 ~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 258 (519)
+|...|+.+.+ .+...+..+..++.+.|++++|...|+++.+.. +.+..++..+...+...|+++.|..+++.+.+
T Consensus 619 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 697 (899)
T TIGR02917 619 KAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK 697 (899)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999998864 356788899999999999999999999998764 44578899999999999999999999999988
Q ss_pred cCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 048578 259 NCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE--KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIA 336 (519)
Q Consensus 259 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 336 (519)
.. +.+...+..+...+...|++++|.+.|+.+.. |+..++..++..+.+.|++++|.+.++++.+.. +.+...+..
T Consensus 698 ~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~ 775 (899)
T TIGR02917 698 QH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTA 775 (899)
T ss_pred hC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 76 66778888899999999999999999999854 555778888999999999999999999998764 556779999
Q ss_pred HHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccC
Q 048578 337 VLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADD 414 (519)
Q Consensus 337 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~ 414 (519)
+...|...|++++|...|+++.+ ..+++...++.++..+...|+ ++|++.++++ ...| +..++..+...+..
T Consensus 776 la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 849 (899)
T TIGR02917 776 LAELYLAQKDYDKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE--- 849 (899)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH---
Confidence 99999999999999999999988 346778899999999999999 8899999988 5555 44566777777888
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 415 GANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
.|++++|...++++++.+|.++.++..++.++.+.|++++|.+++++|.+
T Consensus 850 ~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 850 KGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999863
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=1.1e-20 Score=175.07 Aligned_cols=375 Identities=13% Similarity=0.142 Sum_probs=300.2
Q ss_pred CchhHHHHHHHHHhhcCCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchH---
Q 048578 61 RTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN---PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTY--- 134 (519)
Q Consensus 61 ~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~--- 134 (519)
-..+|+.+.+.+... |++++|+.+++.+++ ..+..|..+..++...|+.+.|...|-+..+ +.|+....
T Consensus 115 ~ae~ysn~aN~~ker---g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~ 189 (966)
T KOG4626|consen 115 GAEAYSNLANILKER---GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSD 189 (966)
T ss_pred HHHHHHHHHHHHHHh---chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcc
Confidence 356788888888888 999999999988854 3567888899999999999999999988887 44655443
Q ss_pred -HHHHHHHcCccchHHHHHHHHHhCCCCCc-hhHHHHHHHHHHhcCChHHHHHHHhcCCCCc---hhHHHHHHHHHHHcC
Q 048578 135 -PILLKACGDLRQVKGVHSLVVKSKDFNSV-IHSLTRLITFYCNFGDVKSAQLLFDQMTEKN---VVTWTAMINGHVKQK 209 (519)
Q Consensus 135 -~~ll~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~ 209 (519)
..++++. |+..++..-..+.-...|. ...|..|...+-..|+...|+..|++...-| ..+|-.|...|...+
T Consensus 190 lgnLlka~---Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~ 266 (966)
T KOG4626|consen 190 LGNLLKAE---GRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEAR 266 (966)
T ss_pred hhHHHHhh---cccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHh
Confidence 3344433 3444444444443324454 5678888888889999999999999887633 357888899999999
Q ss_pred ChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHH
Q 048578 210 NYREGIDLFRKMRDSGVEVN-ELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVF 288 (519)
Q Consensus 210 ~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 288 (519)
.+++|...|.+.... .|+ ...+..+...|...|++|.|...+++..... |.-+..|+.|..++...|++.+|.+.|
T Consensus 267 ~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 267 IFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred cchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHH
Confidence 999999999888765 444 5677788888889999999999999988875 445778999999999999999999999
Q ss_pred hhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCC
Q 048578 289 KIVLEK---NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDV-TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVE 364 (519)
Q Consensus 289 ~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 364 (519)
.+...- ...+.+.|...+...|.+++|..+|....+ +.|.-. .++.|...|-++|++++|+..+++..+ +.
T Consensus 344 nkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~ 418 (966)
T KOG4626|consen 344 NKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IK 418 (966)
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cC
Confidence 988552 456788899999999999999999998876 566644 788899999999999999999998875 55
Q ss_pred CC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHH
Q 048578 365 PN-VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNA-VLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVL 441 (519)
Q Consensus 365 ~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 441 (519)
|+ ...|+.+...|-..|+++.|.+.+.+. .+.|.- ..++.|...|.. .|++.+|+..++.++++.|+.+.+|-.
T Consensus 419 P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kD---sGni~~AI~sY~~aLklkPDfpdA~cN 495 (966)
T KOG4626|consen 419 PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKD---SGNIPEAIQSYRTALKLKPDFPDAYCN 495 (966)
T ss_pred chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhc---cCCcHHHHHHHHHHHccCCCCchhhhH
Confidence 65 578889999999999999999998887 777754 478888888888 999999999999999999999999998
Q ss_pred HHHHHHhcCCchH
Q 048578 442 MSNIYAAKAQWDD 454 (519)
Q Consensus 442 l~~~~~~~g~~~~ 454 (519)
++-++.-..+|.+
T Consensus 496 llh~lq~vcdw~D 508 (966)
T KOG4626|consen 496 LLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHhcccc
Confidence 8888776666655
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=7.1e-21 Score=184.29 Aligned_cols=296 Identities=12% Similarity=0.020 Sum_probs=244.1
Q ss_pred HHHHHhcCChHHHHHHHhcCCC--C-chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccC
Q 048578 171 ITFYCNFGDVKSAQLLFDQMTE--K-NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVN---ELTLVSVLSACANLG 244 (519)
Q Consensus 171 ~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~ 244 (519)
...+...|++++|...|+++.+ | +..++..+...+...|++++|..+++.+...+..++ ...+..+...+.+.|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 3456778999999999999976 3 455788899999999999999999999987642222 246778888899999
Q ss_pred ChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh--------hhHHHHHHHHHHcCChHHHH
Q 048578 245 ASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNV--------CTWNSIIGGLAIHGCGEEAV 316 (519)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~a~ 316 (519)
+++.|..+++.+.+.. +.+..++..++.++.+.|++++|.+.++.+.+.+. ..+..+...+...|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999998764 56678899999999999999999999998865321 23556777888999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 048578 317 KMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PM 395 (519)
Q Consensus 317 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~ 395 (519)
..++++.+.. +.+...+..+...+.+.|++++|.++|+++.+. +......+++.++.+|...|++++|...++++ ..
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999998753 334558888899999999999999999999873 22222467888999999999999999999998 66
Q ss_pred CCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh---cCCchHHHHHHHHHHhCCCccCCc
Q 048578 396 EPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAA---KAQWDDAGKMRRLMKERNIVKNPG 472 (519)
Q Consensus 396 ~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~ 472 (519)
.|+...+..+...+.. .|++++|..+++++.+..|++. .+..++..+.. .|+.+++..++++|.++++.|+|.
T Consensus 279 ~p~~~~~~~la~~~~~---~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 YPGADLLLALAQLLEE---QEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCCchHHHHHHHHHHH---hCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7887777888888999 9999999999999999999865 55555555553 569999999999999999998887
Q ss_pred c
Q 048578 473 C 473 (519)
Q Consensus 473 ~ 473 (519)
.
T Consensus 355 ~ 355 (389)
T PRK11788 355 Y 355 (389)
T ss_pred E
Confidence 3
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=2.5e-20 Score=172.67 Aligned_cols=360 Identities=14% Similarity=0.114 Sum_probs=308.2
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-cchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHH-HHHHHH
Q 048578 96 TFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPD-SFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSL-TRLITF 173 (519)
Q Consensus 96 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~ 173 (519)
..+|..+...+-..|+++.|+.+++.+.+ ++|+ ...|..+-.++...|+...+.+.+...-.+.|+.... ..+...
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHH
Confidence 36788999999999999999999999998 4554 4578888889999999777777666554467765443 445566
Q ss_pred HHhcCChHHHHHHHhcCCC--Cc-hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCChHHH
Q 048578 174 YCNFGDVKSAQLLFDQMTE--KN-VVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVN-ELTLVSVLSACANLGASELG 249 (519)
Q Consensus 174 ~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a 249 (519)
+...|++++|...+.+..+ |. ...|..|.-.+-.+|+.-.|++.|++..+. .|+ ...|-.|...|...+.++.|
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHH
Confidence 7778999999999988765 33 457999999999999999999999999875 444 56888999999999999999
Q ss_pred HHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 048578 250 KWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKN---VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSG 326 (519)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 326 (519)
...+....... +....++..+...|...|.++-|++.|++..+.+ +.+|+.|..++-..|++.+|++.+.+....
T Consensus 272 vs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l- 349 (966)
T KOG4626|consen 272 VSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL- 349 (966)
T ss_pred HHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh-
Confidence 99999988764 5567788889999999999999999999997643 468999999999999999999999998874
Q ss_pred CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHH
Q 048578 327 IKPDD-VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNA-VLWG 403 (519)
Q Consensus 327 ~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~-~~~~ 403 (519)
.|+. ...+.|..++...|.++.|..+|....+ -.+--....+.|...|-.+|++++|+..|++. .++|+- ..++
T Consensus 350 -~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~ 426 (966)
T KOG4626|consen 350 -CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALS 426 (966)
T ss_pred -CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHH
Confidence 5554 5899999999999999999999999987 23334567899999999999999999999998 899975 4899
Q ss_pred HHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 404 SLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 404 ~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
.+...|.. .|+.+.|.+.+.+++..+|.-..+++.|+.+|...|+..+|+.-++...+...
T Consensus 427 NmGnt~ke---~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 427 NMGNTYKE---MGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred hcchHHHH---hhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 99999999 99999999999999999999999999999999999999999999999876443
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=4.1e-19 Score=192.68 Aligned_cols=232 Identities=11% Similarity=0.049 Sum_probs=144.5
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-----------
Q 048578 272 TDMYAKCGYIEEALRVFKIVLEK---NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAV----------- 337 (519)
Q Consensus 272 ~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l----------- 337 (519)
...+...|++++|++.|++..+. +...+..+...+.+.|++++|...++++.+.. +.+...+..+
T Consensus 468 a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~ 546 (1157)
T PRK11447 468 AEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDR 546 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHH
Confidence 33445566667777666666432 33455556666666677777776666665432 1122222222
Q ss_pred ---------------------------------HHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChH
Q 048578 338 ---------------------------------LTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLD 384 (519)
Q Consensus 338 ---------------------------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 384 (519)
...+...|+.++|..+++. .+.+...+..+...+.+.|+++
T Consensus 547 ~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~ 620 (1157)
T PRK11447 547 AALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYA 620 (1157)
T ss_pred HHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHH
Confidence 2334444555555554441 2344556677888888899999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 048578 385 EAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLM 462 (519)
Q Consensus 385 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (519)
+|++.|++. ...| +...+..+...+.. .|++++|.+.++++.+..|+++..+..++.++...|++++|.++++++
T Consensus 621 ~A~~~y~~al~~~P~~~~a~~~la~~~~~---~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 697 (1157)
T PRK11447 621 AARAAYQRVLTREPGNADARLGLIEVDIA---QGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRL 697 (1157)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999988888 5556 45677888888888 888999999999888888888888888899999999999999999988
Q ss_pred HhCCCccCCcccEEEECCEEEEEEeCCCCCCChhHHHHHHHHHHHHHHhcccCCCCC
Q 048578 463 KERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLREECYAARMP 519 (519)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 519 (519)
........+......+. .....-....++.+++...+++.. ...|..|+.|
T Consensus 698 l~~~~~~~~~~~~a~~~---~~~a~~~~~~G~~~~A~~~y~~Al---~~~~~~~~~p 748 (1157)
T PRK11447 698 IPQAKSQPPSMESALVL---RDAARFEAQTGQPQQALETYKDAM---VASGITPTRP 748 (1157)
T ss_pred hhhCccCCcchhhHHHH---HHHHHHHHHcCCHHHHHHHHHHHH---hhcCCCCCCC
Confidence 76543322211000000 000111234566777777666653 4446666543
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=3e-19 Score=181.96 Aligned_cols=387 Identities=14% Similarity=0.032 Sum_probs=264.4
Q ss_pred HHHHHHhhcCCCChHHHHHHHhcCC--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-cchHHHHHHHHcCc
Q 048578 68 LAKLIESLVNSSQIAYAHLVFNQII--NPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPD-SFTYPILLKACGDL 144 (519)
Q Consensus 68 ll~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~ 144 (519)
....+.+. |++++|+..|++.+ .|+...|..+..+|.+.|++++|++.+++..+. .|+ ...|..+-.++...
T Consensus 133 ~G~~~~~~---~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 133 KGNKAYRN---KDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHc---CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHc
Confidence 33444444 67777777776653 355556666666666777777777777666663 233 23555555666666
Q ss_pred cchHHHHHHHHHhCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC--Cchh-------------------------
Q 048578 145 RQVKGVHSLVVKSKDFNS-VIHSLTRLITFYCNFGDVKSAQLLFDQMTE--KNVV------------------------- 196 (519)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~------------------------- 196 (519)
|+.+++...+......++ +......++..+........+...++.-.. +...
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 665555443322210111 111111111111111111122222211111 0000
Q ss_pred -----HHHHHHHH---HHHcCChhHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchh
Q 048578 197 -----TWTAMING---HVKQKNYREGIDLFRKMRDSG-VEV-NELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDK 266 (519)
Q Consensus 197 -----~~~~li~~---~~~~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 266 (519)
.+..+... ....+++++|.+.|+...+.+ ..| ....+..+...+...|+++.|...++...... +.+..
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~ 366 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQ 366 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHH
Confidence 00000000 012367899999999998764 233 34567777788889999999999999998875 44567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 048578 267 LGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSH 343 (519)
Q Consensus 267 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 343 (519)
.+..+..++...|++++|...|+++.+ .+...|..+...+...|++++|...|++..+.. +.+...+..+..++.+
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHH
Confidence 888899999999999999999998854 356789999999999999999999999998753 3345678888999999
Q ss_pred cCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHccccC
Q 048578 344 AGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNA-V-------LWGSLLTACASADD 414 (519)
Q Consensus 344 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~-~-------~~~~ll~~~~~~~~ 414 (519)
.|++++|+..|+...+ ..+.+...|+.+..++...|++++|++.|++. .+.|+. . .++..+..+..
T Consensus 446 ~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~--- 520 (615)
T TIGR00990 446 EGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW--- 520 (615)
T ss_pred CCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH---
Confidence 9999999999999987 34556788999999999999999999999987 444431 1 11222223344
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 415 GANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
.|++++|.++++++++.+|++..++..++.++.+.|++++|.+.|++..+..
T Consensus 521 ~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 521 KQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 6899999999999999999998999999999999999999999999987643
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.88 E-value=5e-18 Score=184.31 Aligned_cols=350 Identities=11% Similarity=0.010 Sum_probs=233.9
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCC-chhHHHHHHHHHHhcCChHHHH
Q 048578 106 YAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNS-VIHSLTRLITFYCNFGDVKSAQ 184 (519)
Q Consensus 106 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 184 (519)
+.+.|++++|+..|++..+.. +.+...+..+-..+...|+.+++.+.+.+.-...| +...+..+...|. .++.++|.
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~ 438 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKAL 438 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHH
Confidence 344555555555555555431 11222333344444444444443333333221222 2333333444332 23445555
Q ss_pred HHHhcCCCCc------------hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 048578 185 LLFDQMTEKN------------VVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWV 252 (519)
Q Consensus 185 ~~~~~~~~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 252 (519)
.+++.+.... ...+..+...+...|++++|++.|++..+.. +-+...+..+...+.+.|++++|...
T Consensus 439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5554443210 1123334556667888888888888887753 22455666777788888888888888
Q ss_pred HHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC----h---------hhHHHHHHHHHHcCChHHHHHHH
Q 048578 253 HEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKN----V---------CTWNSIIGGLAIHGCGEEAVKMF 319 (519)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~---------~~~~~l~~~~~~~g~~~~a~~~~ 319 (519)
++.+.+.. +.++..+..+...+...++.++|+..++.+.... . ..+..+...+...|++++|..++
T Consensus 518 l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 518 MRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 88887654 3455555555666777888888888888775421 1 11234456778889999999988
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 048578 320 WQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN 398 (519)
Q Consensus 320 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~ 398 (519)
+. .+++...+..+...+.+.|++++|+..|+++.+ .-+.+...+..++..|...|++++|++.++.. ...|+
T Consensus 597 ~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~ 669 (1157)
T PRK11447 597 RQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND 669 (1157)
T ss_pred Hh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence 72 244556778889999999999999999999998 34556888999999999999999999999988 55664
Q ss_pred -HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCC------chHHHHHHHHHhcCCchHHHHHHHHHHh-CCCcc
Q 048578 399 -AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFND------GNYVLMSNIYAAKAQWDDAGKMRRLMKE-RNIVK 469 (519)
Q Consensus 399 -~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~~ 469 (519)
...+..+..++.. .|++++|.++++++++..|.++ ..+..++.++...|++++|+..|++... .++.|
T Consensus 670 ~~~~~~~la~~~~~---~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 670 SLNTQRRVALAWAA---LGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred ChHHHHHHHHHHHh---CCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 4456667777888 9999999999999998876544 3566779999999999999999999863 34443
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=6.5e-19 Score=170.56 Aligned_cols=292 Identities=14% Similarity=0.095 Sum_probs=219.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHH
Q 048578 103 IRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKS 182 (519)
Q Consensus 103 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 182 (519)
...+...|++++|+..|.++.+.+ +.+..++..+...+...|++++
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~----------------------------------p~~~~~~~~la~~~~~~g~~~~ 87 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD----------------------------------PETVELHLALGNLFRRRGEVDR 87 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC----------------------------------cccHHHHHHHHHHHHHcCcHHH
Confidence 445567788888888888888732 2233455666667777788888
Q ss_pred HHHHHhcCCC-Cc------hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 048578 183 AQLLFDQMTE-KN------VVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEF 255 (519)
Q Consensus 183 A~~~~~~~~~-~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 255 (519)
|..+++.+.. ++ ...+..+...|.+.|++++|..+|+++.+.. +.+..++..++..+.+.|++++|...++.
T Consensus 88 A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 166 (389)
T PRK11788 88 AIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAER 166 (389)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 8877777654 21 2356777788888888888888888887652 34566777788888888888888888888
Q ss_pred HHHcCCCcc----hhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 048578 256 VNKNCIILN----DKLGAALTDMYAKCGYIEEALRVFKIVLEK---NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIK 328 (519)
Q Consensus 256 ~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 328 (519)
+.+.+..+. ...+..+...+.+.|++++|...|+++.+. +...+..+...+.+.|++++|.++++++.+.+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 246 (389)
T PRK11788 167 LEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE 246 (389)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence 877653221 224456777788889999999999887542 4557778889999999999999999999875322
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 048578 329 PDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAVLWGSLLT 407 (519)
Q Consensus 329 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~ 407 (519)
....++..++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++ ...|+..++..++.
T Consensus 247 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~ 323 (389)
T PRK11788 247 YLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLD 323 (389)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 22457888999999999999999999998873 466667788999999999999999999887 76899999998888
Q ss_pred HHccccCCCCHHHHHHHHHHHHhhC
Q 048578 408 ACASADDGANVELAEIAMERLIKLE 432 (519)
Q Consensus 408 ~~~~~~~~~~~~~a~~~~~~~~~~~ 432 (519)
.+....+.|+.+++..+++++.+..
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHHHH
Confidence 7664222457888888888887633
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=5.2e-18 Score=172.37 Aligned_cols=265 Identities=11% Similarity=0.001 Sum_probs=206.6
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048578 163 VIHSLTRLITFYCNFGDVKSAQLLFDQMTE--K-NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSA 239 (519)
Q Consensus 163 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 239 (519)
+...+..+...+...|++++|...|++... | +...+..+...+...|++++|...++.+......+ ...+..+ ..
T Consensus 109 ~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~ 186 (656)
T PRK15174 109 QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LS 186 (656)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HH
Confidence 455677777888899999999999988865 3 45678888889999999999999998887654332 2233233 34
Q ss_pred HhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHH--
Q 048578 240 CANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK---NVCTWNSIIGGLAIHGCGEE-- 314 (519)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~-- 314 (519)
+...|++++|...++.+.+....++......+..++...|++++|+..++++.+. +...+..+...+...|++++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~ 266 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAK 266 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhH
Confidence 7788999999999998877653344455556677888999999999999887552 56677888899999999986
Q ss_pred --HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 048578 315 --AVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRN 392 (519)
Q Consensus 315 --a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 392 (519)
|...+++..+.. +.+...+..+...+...|++++|...+++..+. .+.+...+..+..++.+.|++++|...|++
T Consensus 267 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 267 LQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 799999988742 334558888999999999999999999998872 344566777889999999999999999998
Q ss_pred C-CCCCCHHHHH-HHHHHHccccCCCCHHHHHHHHHHHHhhCCCC
Q 048578 393 M-PMEPNAVLWG-SLLTACASADDGANVELAEIAMERLIKLEPFN 435 (519)
Q Consensus 393 ~-~~~p~~~~~~-~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (519)
+ ...|+...+. .+..++.. .|+.++|...|+++++..|++
T Consensus 344 al~~~P~~~~~~~~~a~al~~---~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 344 LAREKGVTSKWNRYAAAALLQ---AGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHhCccchHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhChhh
Confidence 8 5567654433 34556777 899999999999999998874
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=1.2e-17 Score=169.82 Aligned_cols=347 Identities=10% Similarity=-0.013 Sum_probs=274.1
Q ss_pred CChHHHHHHHhcCCC------CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHH
Q 048578 79 SQIAYAHLVFNQIIN------PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHS 152 (519)
Q Consensus 79 ~~~~~A~~~~~~~~~------~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~ 152 (519)
.+|+.-.-+|...++ .+......++..+.+.|++++|+.++......
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~--------------------------- 71 (656)
T PRK15174 19 EDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLT--------------------------- 71 (656)
T ss_pred hchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHh---------------------------
Confidence 455555555555432 23334556677888899999999999888874
Q ss_pred HHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC
Q 048578 153 LVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE--K-NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVN 229 (519)
Q Consensus 153 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 229 (519)
.+-.......++.+....|++++|...|+++.. | +...+..+...+.+.|++++|...+++..+.. +.+
T Consensus 72 -------~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~ 143 (656)
T PRK15174 72 -------AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGN 143 (656)
T ss_pred -------CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCc
Confidence 222334444555556779999999999999876 3 45678888999999999999999999998763 334
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC----hhhHHHHHHH
Q 048578 230 ELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKN----VCTWNSIIGG 305 (519)
Q Consensus 230 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~l~~~ 305 (519)
...+..+...+...|++++|...+..+..... .+...+..+ ..+...|++++|...++.+.+.+ ...+..+...
T Consensus 144 ~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~ 221 (656)
T PRK15174 144 SQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDT 221 (656)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 66788888899999999999999998877653 333344333 34788999999999999876532 3344555678
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH----HHHHHHHcHHhcCCCCChhHHHHHHHHHHhcC
Q 048578 306 LAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEK----GKEIFYNMRRDYKVEPNVKHYGCLVDLLCRAR 381 (519)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (519)
+...|++++|+..++++.+.. +.+...+..+...+...|++++ |...|++..+ ..+.+...+..+...+...|
T Consensus 222 l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g 298 (656)
T PRK15174 222 LCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTG 298 (656)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCC
Confidence 889999999999999998764 4456688889999999999986 8999999987 34456778999999999999
Q ss_pred ChHHHHHHHHhC-CCCCC-HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 048578 382 LLDEAYEVIRNM-PMEPN-AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMR 459 (519)
Q Consensus 382 ~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (519)
++++|...+++. ...|+ ...+..+...+.. .|++++|...++++.+.+|.++..+..++.++...|++++|.+.|
T Consensus 299 ~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~---~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l 375 (656)
T PRK15174 299 QNEKAIPLLQQSLATHPDLPYVRAMYARALRQ---VGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVF 375 (656)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999998 55665 4466677777888 999999999999999999998777777889999999999999999
Q ss_pred HHHHhCCCc
Q 048578 460 RLMKERNIV 468 (519)
Q Consensus 460 ~~m~~~~~~ 468 (519)
++..+....
T Consensus 376 ~~al~~~P~ 384 (656)
T PRK15174 376 EHYIQARAS 384 (656)
T ss_pred HHHHHhChh
Confidence 998876554
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=6e-17 Score=168.18 Aligned_cols=380 Identities=11% Similarity=-0.016 Sum_probs=231.5
Q ss_pred CChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-cchHHHHHHHHcCccchHHHHHHH
Q 048578 79 SQIAYAHLVFNQIIN---PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPD-SFTYPILLKACGDLRQVKGVHSLV 154 (519)
Q Consensus 79 ~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~~~~ 154 (519)
|+.++|++++..... .+...+..+...+...|++++|+++|++..+. .|+ ...+..+...+...|+..++...+
T Consensus 29 g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~~~eA~~~l 106 (765)
T PRK10049 29 GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQYDEALVKA 106 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 555555555555432 12223555555555555555555555555542 222 223334444444555544444444
Q ss_pred HHhCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH
Q 048578 155 VKSKDFNS-VIHSLTRLITFYCNFGDVKSAQLLFDQMTE--K-NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNE 230 (519)
Q Consensus 155 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 230 (519)
.+.-...| +.. +..+..++...|+.++|+..++++.+ | +...+..+..++...+..++|++.++.... .|+.
T Consensus 107 ~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~ 182 (765)
T PRK10049 107 KQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAE 182 (765)
T ss_pred HHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHH
Confidence 33222233 344 66667777778888888888877765 3 344555666677777777778777765543 2221
Q ss_pred ------HHHHHHHHHHh-----ccCCh---HHHHHHHHHHHHc-CCCcchh-HH----HHHHHHHHhcCCHHHHHHHHhh
Q 048578 231 ------LTLVSVLSACA-----NLGAS---ELGKWVHEFVNKN-CIILNDK-LG----AALTDMYAKCGYIEEALRVFKI 290 (519)
Q Consensus 231 ------~~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~g~~~~a~~~~~~ 290 (519)
.....++.... ..+++ +.|...++.+.+. ...|+.. .+ ...+.++...|++++|+..|+.
T Consensus 183 ~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ 262 (765)
T PRK10049 183 KRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQR 262 (765)
T ss_pred HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 01111222221 11223 5666677776653 1122211 11 1112344566888888888888
Q ss_pred cCCCC---h-hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcC-
Q 048578 291 VLEKN---V-CTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKP---DDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYK- 362 (519)
Q Consensus 291 ~~~~~---~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~- 362 (519)
+.+.+ + ..-..+...+...|++++|+..|+++....-.. .......+..++...|++++|..+++.+.....
T Consensus 263 ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~ 342 (765)
T PRK10049 263 LKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPP 342 (765)
T ss_pred hhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCc
Confidence 86542 1 122224667888888888888888876542111 123455666677888888888888888876210
Q ss_pred ---------CCCC---hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHH
Q 048578 363 ---------VEPN---VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERL 428 (519)
Q Consensus 363 ---------~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~ 428 (519)
-.|+ ...+..++..+...|+.++|++.++++ ...| +...+..+...+.. .|++++|++.++++
T Consensus 343 ~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~---~g~~~~A~~~l~~a 419 (765)
T PRK10049 343 FLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQA---RGWPRAAENELKKA 419 (765)
T ss_pred eEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 0122 234456777888888999998888887 4455 45567777777777 88889999999998
Q ss_pred HhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 429 IKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 429 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
++..|++..++..++..+...|++++|+.+++++.+...
T Consensus 420 l~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 420 EVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 888888888888888888888899999998888876543
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.83 E-value=5.8e-16 Score=161.16 Aligned_cols=434 Identities=10% Similarity=0.003 Sum_probs=292.1
Q ss_pred hhhhhhhhhccccCCCCCCCCCcccHHHHHHhccCchHHHHHHHHHHHhcCCCCchhHHHHHHH--------HHhhcCCC
Q 048578 8 NSQLTHFTNSANSHKNSNTATKSHHHLPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKL--------IESLVNSS 79 (519)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~~~~~ 79 (519)
.++...++.+.. ..|+...|..++........+..+++.+.+.. +.+..++..+... |.+. +
T Consensus 95 ~~A~~~~~kAv~------ldP~n~~~~~~La~i~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---e 164 (987)
T PRK09782 95 DRARLLLEDQLK------RHPGDARLERSLAAIPVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---P 164 (987)
T ss_pred HHHHHHHHHHHh------cCcccHHHHHHHHHhccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---H
Confidence 344444444444 23555555555666667777777777777665 3345555555554 5555 5
Q ss_pred ChHHHHHHHhcCCCCC--cchHHHH-HHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcC-ccchHHHHHHHH
Q 048578 80 QIAYAHLVFNQIINPS--TFAFNTV-IRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGD-LRQVKGVHSLVV 155 (519)
Q Consensus 80 ~~~~A~~~~~~~~~~~--~~~~~~l-l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~~~~~~~ 155 (519)
...++++ .+...|+ ..+.... ...|.+.|++++|++++.++.+.+.. +..-...+-.++.. .++ +.+.....
T Consensus 165 qAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~ 240 (987)
T PRK09782 165 VARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQS 240 (987)
T ss_pred HHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhc
Confidence 5555555 2333343 3333444 78888889999999999999886532 22334444445544 244 44444422
Q ss_pred HhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-------------------------------------------
Q 048578 156 KSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE------------------------------------------- 192 (519)
Q Consensus 156 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------------------------- 192 (519)
..+..+......++..|.+.|+.++|.++++++..
T Consensus 241 --~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (987)
T PRK09782 241 --QGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGA 318 (987)
T ss_pred --hhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHH
Confidence 22445677777888888888888888888877750
Q ss_pred ------------------------------------------------------C-chhHHHHHHHHHHHcCChhHHHHH
Q 048578 193 ------------------------------------------------------K-NVVTWTAMINGHVKQKNYREGIDL 217 (519)
Q Consensus 193 ------------------------------------------------------~-~~~~~~~li~~~~~~~~~~~a~~~ 217 (519)
| +......+.-...+.|+.++|.++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~ 398 (987)
T PRK09782 319 TLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADL 398 (987)
T ss_pred HHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHH
Confidence 0 000000001111223333333333
Q ss_pred HHHHHh--------------------------------------------------------------C-CC-CC--CHH
Q 048578 218 FRKMRD--------------------------------------------------------------S-GV-EV--NEL 231 (519)
Q Consensus 218 ~~~m~~--------------------------------------------------------------~-~~-~~--~~~ 231 (519)
|+.... . +. ++ +..
T Consensus 399 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~ 478 (987)
T PRK09782 399 LLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAA 478 (987)
T ss_pred HHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHH
Confidence 322211 0 01 22 456
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHHc
Q 048578 232 TLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE--KNVCTWNSIIGGLAIH 309 (519)
Q Consensus 232 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~ 309 (519)
.+..+..++.. +++++|...+....... |+......+...+...|++++|...|+++.. ++...+..+...+.+.
T Consensus 479 a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~ 555 (987)
T PRK09782 479 AWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAA 555 (987)
T ss_pred HHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHC
Confidence 67777766666 78888999777777654 4444444456666789999999999998754 3445566777888999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 048578 310 GCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEV 389 (519)
Q Consensus 310 g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 389 (519)
|++++|...+++..+.+ +++...+..+.......|++++|...+++..+ ..|+...|..+..++.+.|++++|...
T Consensus 556 Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~ 631 (987)
T PRK09782 556 GNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSD 631 (987)
T ss_pred CCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999998754 22333444444555567999999999999987 346788899999999999999999999
Q ss_pred HHhC-CCCCCH-HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 390 IRNM-PMEPNA-VLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 390 ~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
+++. ...|+. ..+..+..++.. .|++++|...++++++.+|+++.++..++.++...|++++|+..+++..+...
T Consensus 632 l~~AL~l~Pd~~~a~~nLG~aL~~---~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 632 LRAALELEPNNSNYQAALGYALWD---SGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9998 777754 466666667888 89999999999999999999999999999999999999999999999976553
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=1e-15 Score=156.20 Aligned_cols=379 Identities=9% Similarity=-0.027 Sum_probs=273.1
Q ss_pred cCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCC--C-CcchHHHHHHHHHhcCChhHHHH
Q 048578 41 THLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN--P-STFAFNTVIRGYAEAGLGHRGIQ 117 (519)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~g~~~~a~~ 117 (519)
.+...+...++..++ +.|++..|..+...|.+. |++++|+..++...+ | +..+|..+..+|...|++++|+.
T Consensus 141 ~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l---~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~ 215 (615)
T TIGR00990 141 KDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNAL---GDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALL 215 (615)
T ss_pred CCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHh---CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 455555666666654 456788899999999999 999999999998854 3 45688889999999999999999
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhC-----------------------------CCCCc-hhHH
Q 048578 118 LYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSK-----------------------------DFNSV-IHSL 167 (519)
Q Consensus 118 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~-~~~~ 167 (519)
-|......+-..+. ....++...............+.... ...+. ...+
T Consensus 216 ~~~~~~~~~~~~~~-~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (615)
T TIGR00990 216 DLTASCIIDGFRNE-QSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQ 294 (615)
T ss_pred HHHHHHHhCCCccH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccch
Confidence 88776553211111 11111111000000000000000000 01111 0011
Q ss_pred HHHHHH---HHhcCChHHHHHHHhcCCC-----C-chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 048578 168 TRLITF---YCNFGDVKSAQLLFDQMTE-----K-NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVN-ELTLVSVL 237 (519)
Q Consensus 168 ~~l~~~---~~~~g~~~~A~~~~~~~~~-----~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll 237 (519)
..+... ....+++++|.+.|+.... | ....|+.+...+...|++++|+..|++.... .|+ ...|..+.
T Consensus 295 ~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la 372 (615)
T TIGR00990 295 LQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRA 372 (615)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHH
Confidence 111111 1234689999999988764 2 3457888888999999999999999999876 344 55788888
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHH
Q 048578 238 SACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK---NVCTWNSIIGGLAIHGCGEE 314 (519)
Q Consensus 238 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~ 314 (519)
..+...|+++.|...++.+.+.. +.+..++..+..++...|++++|...|++..+. +...+..+...+.+.|++++
T Consensus 373 ~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~e 451 (615)
T TIGR00990 373 SMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIAS 451 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHH
Confidence 88999999999999999998875 566788999999999999999999999998653 45677788899999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC-hh-------HHHHHHHHHHhcCChHHH
Q 048578 315 AVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN-VK-------HYGCLVDLLCRARLLDEA 386 (519)
Q Consensus 315 a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~-------~~~~l~~~~~~~~~~~~A 386 (519)
|+..|++..+.. +.+...++.+..++...|++++|+..|+...+. .|+ .. .++..+..+...|++++|
T Consensus 452 A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA 527 (615)
T TIGR00990 452 SMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEA 527 (615)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHH
Confidence 999999988742 334668899999999999999999999998772 222 11 122222334457999999
Q ss_pred HHHHHhC-CCCCCH-HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC
Q 048578 387 YEVIRNM-PMEPNA-VLWGSLLTACASADDGANVELAEIAMERLIKLEPFN 435 (519)
Q Consensus 387 ~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (519)
.+++++. .+.|+. ..+..+...+.. .|++++|.+.|+++.++.+..
T Consensus 528 ~~~~~kAl~l~p~~~~a~~~la~~~~~---~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 528 ENLCEKALIIDPECDIAVATMAQLLLQ---QGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHHhccH
Confidence 9999987 666754 468888888999 999999999999999987653
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=1.2e-16 Score=166.07 Aligned_cols=393 Identities=13% Similarity=0.023 Sum_probs=280.4
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCC-CCchhHHHHHHHHH
Q 048578 96 TFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDF-NSVIHSLTRLITFY 174 (519)
Q Consensus 96 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~ 174 (519)
..--.-.+......|+.++|++++.+..... ..+...+..+...+...|+..++...+.+.-.. +.+......++..+
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l 93 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3334455677888999999999999998621 234446888888888999977777777664334 44566778888999
Q ss_pred HhcCChHHHHHHHhcCCC--C-chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 048578 175 CNFGDVKSAQLLFDQMTE--K-NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKW 251 (519)
Q Consensus 175 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 251 (519)
...|++++|...+++..+ | +.. +..+..++...|+.++|+..++++.+... .+...+..+..++...+..+.|..
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHH
Confidence 999999999999999865 3 455 88888999999999999999999998742 244555667777888899999998
Q ss_pred HHHHHHHcCCCcch------hHHHHHHHHHH-----hcCCH---HHHHHHHhhcCC---CChhh---H----HHHHHHHH
Q 048578 252 VHEFVNKNCIILND------KLGAALTDMYA-----KCGYI---EEALRVFKIVLE---KNVCT---W----NSIIGGLA 307 (519)
Q Consensus 252 ~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~a~~~~~~~~~---~~~~~---~----~~l~~~~~ 307 (519)
.++.+.. .|+. .....++..+. ..+++ ++|++.++.+.+ .++.. + ...+..+.
T Consensus 172 ~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 172 AIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence 8876554 1111 11222222222 22234 778888887763 22211 1 11134556
Q ss_pred HcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCC--ChhHHHHHHHHHHhcCChH
Q 048578 308 IHGCGEEAVKMFWQMQMSGIK-PDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEP--NVKHYGCLVDLLCRARLLD 384 (519)
Q Consensus 308 ~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~ 384 (519)
..|++++|+..|+++.+.+.. |+. ....+..+|...|++++|+..|+.+.+.....+ .......+..++...|+++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 779999999999999887532 433 223357789999999999999999876311111 1345666777889999999
Q ss_pred HHHHHHHhC-CCCC-------------CH---HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 048578 385 EAYEVIRNM-PMEP-------------NA---VLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYA 447 (519)
Q Consensus 385 ~A~~~~~~~-~~~p-------------~~---~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (519)
+|.++++.+ ...| +. ..+..+...+.. .|+.++|+..++++....|.++..+..++.++.
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~---~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY---SNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ 404 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999988 3333 32 234455666777 899999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCCChhHHHHHHHHHHH
Q 048578 448 AKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAI 507 (519)
Q Consensus 448 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (519)
..|++++|++.+++..+..... +. .++ ..+......++.+++...++++..
T Consensus 405 ~~g~~~~A~~~l~~al~l~Pd~-~~-l~~-------~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLEPRN-IN-LEV-------EQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred hcCCHHHHHHHHHHHHhhCCCC-hH-HHH-------HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999998865321 11 110 011122345577888888877753
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=1.9e-14 Score=147.01 Aligned_cols=418 Identities=9% Similarity=0.007 Sum_probs=298.5
Q ss_pred cCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCCCCcchHHHH---HHHHHhcCChhHHHH
Q 048578 41 THLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTV---IRGYAEAGLGHRGIQ 117 (519)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l---l~~~~~~g~~~~a~~ 117 (519)
++...+...++++.+......+.++ .++..+... |+.++|+..+++...|+...+..+ ...+...|++++|++
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~---G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWA---GRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHc---CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4555666777777655432222344 788888888 999999999999987755544443 346777899999999
Q ss_pred HHHHHHhCCCCCC-cchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-
Q 048578 118 LYTQMIGNGLDPD-SFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE--K- 193 (519)
Q Consensus 118 ~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~- 193 (519)
+|+++.+.. |+ ...+..+...+...++.+++++.+.+.....|+...+..++..+...++..+|+..++++.+ |
T Consensus 124 ly~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~ 201 (822)
T PRK14574 124 LWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT 201 (822)
T ss_pred HHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC
Confidence 999999853 43 45566777788888999999999888776777766665555556556777679999999876 4
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH------HHHHHHHH-----hccCCh---HHHHHHHHHHHHc
Q 048578 194 NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELT------LVSVLSAC-----ANLGAS---ELGKWVHEFVNKN 259 (519)
Q Consensus 194 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~------~~~ll~~~-----~~~~~~---~~a~~~~~~~~~~ 259 (519)
+...+..+..++.+.|-...|.++..+-... +.+...- ....++.- ....++ +.|..-++.+...
T Consensus 202 n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~ 280 (822)
T PRK14574 202 SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTR 280 (822)
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhh
Confidence 4567788888999999998988776654321 1221111 11111111 011223 3344444444432
Q ss_pred -CC-Ccchh----HHHHHHHHHHhcCCHHHHHHHHhhcCCCC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCC---
Q 048578 260 -CI-ILNDK----LGAALTDMYAKCGYIEEALRVFKIVLEKN----VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSG--- 326 (519)
Q Consensus 260 -~~-~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g--- 326 (519)
+. |+... ..--.+-++...|++.++++.|+.+.... ..+-..+..+|...+++++|+.+++.+....
T Consensus 281 ~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~ 360 (822)
T PRK14574 281 WGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKT 360 (822)
T ss_pred ccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccc
Confidence 11 22211 22234557788899999999999997542 3455678899999999999999999986542
Q ss_pred --CCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCC----------CCC---hhHHHHHHHHHHhcCChHHHHHHHH
Q 048578 327 --IKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKV----------EPN---VKHYGCLVDLLCRARLLDEAYEVIR 391 (519)
Q Consensus 327 --~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----------~~~---~~~~~~l~~~~~~~~~~~~A~~~~~ 391 (519)
..++......|.-++..++++++|..+++++.+.... .|+ ...+..++..+...|++.+|.+.++
T Consensus 361 ~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le 440 (822)
T PRK14574 361 FRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLE 440 (822)
T ss_pred cCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1223344678889999999999999999999872110 122 1334456788889999999999999
Q ss_pred hC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 048578 392 NM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 392 ~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (519)
++ ...| |......+...+.. .|.+.+|++.++.+..++|++..+....+.++...|+|.+|..+.+.+.+...+
T Consensus 441 ~l~~~aP~n~~l~~~~A~v~~~---Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 441 DLSSTAPANQNLRIALASIYLA---RDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred HHHHhCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCC
Confidence 98 5556 66677788888888 999999999999999999999999999999999999999999998887665544
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.77 E-value=1.4e-14 Score=151.08 Aligned_cols=439 Identities=10% Similarity=0.017 Sum_probs=263.9
Q ss_pred cCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCC--CCcchHHHHHHHHHhcCChhHHHHH
Q 048578 41 THLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN--PSTFAFNTVIRGYAEAGLGHRGIQL 118 (519)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~ 118 (519)
++...+...++...+.. |.++.++..|...|... |++++|+..+++..+ |+-..|..++..+ +++++|..+
T Consensus 58 Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~---g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 58 NDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHF---GHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHH
Confidence 45555567777777665 33477888999999999 999999999999865 4334444444333 888899999
Q ss_pred HHHHHhCCCCCCcc-hHHHHHHH--------HcCccchHHHHHHHHHhCCCCCchhHHHHH-HHHHHhcCChHHHHHHHh
Q 048578 119 YTQMIGNGLDPDSF-TYPILLKA--------CGDLRQVKGVHSLVVKSKDFNSVIHSLTRL-ITFYCNFGDVKSAQLLFD 188 (519)
Q Consensus 119 ~~~m~~~g~~p~~~-~~~~ll~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~ 188 (519)
++++.+. .|+.. .+..+... |.+.+.+..+++ ..... ..|...+.... ..+|.+.|++++|+..+.
T Consensus 131 ye~l~~~--~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~-~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 131 VEELLAQ--QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFA-ASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHh--CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhC-CCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 9999884 34433 33333333 455555555555 22221 22233333333 666777777777666666
Q ss_pred cCCC----------------------------------CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CCHHHH
Q 048578 189 QMTE----------------------------------KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVE-VNELTL 233 (519)
Q Consensus 189 ~~~~----------------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~ 233 (519)
++.+ .++..+..+...|.+.|+.++|.++++++...-.. |+..++
T Consensus 207 ~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~ 286 (987)
T PRK09782 207 EARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSW 286 (987)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHH
Confidence 5542 34445567778888888888998888887543111 211111
Q ss_pred HHH------------------------------HHHHhccC---------------------------------------
Q 048578 234 VSV------------------------------LSACANLG--------------------------------------- 244 (519)
Q Consensus 234 ~~l------------------------------l~~~~~~~--------------------------------------- 244 (519)
..+ +..+.+.+
T Consensus 287 ~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 366 (987)
T PRK09782 287 LYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLAR 366 (987)
T ss_pred HHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHH
Confidence 111 11112222
Q ss_pred ------------------------ChHHHHHHHHHHHHc-C-CCcchhHHHHHHHHHHhc--------------------
Q 048578 245 ------------------------ASELGKWVHEFVNKN-C-IILNDKLGAALTDMYAKC-------------------- 278 (519)
Q Consensus 245 ------------------------~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~-------------------- 278 (519)
+.++|..+++..... + ...+.....-++..|.+.
T Consensus 367 ~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 446 (987)
T PRK09782 367 LLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAE 446 (987)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccch
Confidence 222222222222110 0 001111222223333322
Q ss_pred -------------------------------------------CCHHHHHHHHhhcCCCChhhHHHH--HHHHHHcCChH
Q 048578 279 -------------------------------------------GYIEEALRVFKIVLEKNVCTWNSI--IGGLAIHGCGE 313 (519)
Q Consensus 279 -------------------------------------------g~~~~a~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~ 313 (519)
++.++|...+.+.....+..+..+ ...+...|+++
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~e 526 (987)
T PRK09782 447 QRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYA 526 (987)
T ss_pred hHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHH
Confidence 333344443333322111122222 23334677788
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 048578 314 EAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM 393 (519)
Q Consensus 314 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 393 (519)
+|...|+++... .|+...+..+..++.+.|+.++|...++...+. .++....+..+...+.+.|++++|...+++.
T Consensus 527 eAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~A 602 (987)
T PRK09782 527 TALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELALNDLTRS 602 (987)
T ss_pred HHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 888777776543 444455566667777888888888888887762 2233333333444445569999999999888
Q ss_pred -CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCc
Q 048578 394 -PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPG 472 (519)
Q Consensus 394 -~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 472 (519)
.+.|+...+..+...+.+ .|++++|...++++++.+|+++..+..++.++...|++++|+..+++..+..... +.
T Consensus 603 L~l~P~~~a~~~LA~~l~~---lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~-~~ 678 (987)
T PRK09782 603 LNIAPSANAYVARATIYRQ---RHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD-PA 678 (987)
T ss_pred HHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HH
Confidence 778888888888888999 9999999999999999999999999999999999999999999999998754432 11
Q ss_pred ccEEEECCEEEEEEeCCCCCCChhHHHHHHHHHH
Q 048578 473 CSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVA 506 (519)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (519)
.+. .+.......++.+++...+++..
T Consensus 679 -a~~-------nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 679 -LIR-------QLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred -HHH-------HHHHHHHHCCCHHHHHHHHHHHH
Confidence 110 11122234556666666666553
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=6.6e-14 Score=125.09 Aligned_cols=394 Identities=13% Similarity=0.104 Sum_probs=205.6
Q ss_pred hccCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhc--------------------------CCCChHHHHHHHhcCC
Q 048578 39 KCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLV--------------------------NSSQIAYAHLVFNQII 92 (519)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--------------------------~~~~~~~A~~~~~~~~ 92 (519)
+.....|..-+++.|...|.+.++..-..|+...+-.- ++|.+.+ ++-+..
T Consensus 127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd---L~~E~~ 203 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD---LLFETL 203 (625)
T ss_pred hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH---HHHhhc
Confidence 34677888899999999999988888777776543321 1122222 233333
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHH
Q 048578 93 NPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLIT 172 (519)
Q Consensus 93 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 172 (519)
+.+..+|..||.++++--..+.|.++|++..+...+.+..+||.+|.+-+-..+ +++...|.... +.||..++|+++.
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~-K~Lv~EMisqk-m~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG-KKLVAEMISQK-MTPNLFTFNALLS 281 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc-HHHHHHHHHhh-cCCchHhHHHHHH
Confidence 456678888888888888888888888888887777888888888776543333 44555555555 5666666666666
Q ss_pred HHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHH-HH
Q 048578 173 FYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELG-KW 251 (519)
Q Consensus 173 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a-~~ 251 (519)
+..+.|+++.|... |.+++.+|++-|+.|...+|..+|..+++.++..+. ..
T Consensus 282 c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 282 CAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred HHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 66666655544332 234444555555555555555555555444444322 12
Q ss_pred HHHHHHHc--C------CCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--------CC---hhhHHHHHHHHHHcCCh
Q 048578 252 VHEFVNKN--C------IILNDKLGAALTDMYAKCGYIEEALRVFKIVLE--------KN---VCTWNSIIGGLAIHGCG 312 (519)
Q Consensus 252 ~~~~~~~~--~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~---~~~~~~l~~~~~~~g~~ 312 (519)
+...+... | .+.+...|...+..|....+.+-|..+-.-... ++ ..-|..+....++....
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~ 414 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI 414 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 22222110 0 112233344444444444444444444332211 11 11234455555555556
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcC-----------
Q 048578 313 EEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRAR----------- 381 (519)
Q Consensus 313 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------- 381 (519)
+.....|+.|.-.-+-|+..+...++++....|.++-.-++|..+.. +|..-....-..+...+++.+
T Consensus 415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql 493 (625)
T KOG4422|consen 415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YGHTFRSDLREEILMLLARDKLHPLTPEREQL 493 (625)
T ss_pred HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 66666666665555556666666666666666666666666555555 333222222222222222211
Q ss_pred ---------ChHHHHH-HHHhC-CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhC---CCCCc--hHHHHHHH
Q 048578 382 ---------LLDEAYE-VIRNM-PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLE---PFNDG--NYVLMSNI 445 (519)
Q Consensus 382 ---------~~~~A~~-~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~--~~~~l~~~ 445 (519)
++.++.+ .-.++ ...-.....+...-.+.+ .|..++|.+++....+.+ |..+. +...+.+.
T Consensus 494 ~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R---~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~ 570 (625)
T KOG4422|consen 494 QVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLR---AGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDS 570 (625)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHH---cchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHH
Confidence 1111111 01111 112233344444445556 666666666666664433 33222 22234444
Q ss_pred HHhcCCchHHHHHHHHHHhCCCc
Q 048578 446 YAAKAQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 446 ~~~~g~~~~A~~~~~~m~~~~~~ 468 (519)
-.+.+..-.|..+++-|...+..
T Consensus 571 a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 571 AKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred HHhcCCHHHHHHHHHHHHHcCch
Confidence 44555666666666666665554
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.72 E-value=5.3e-13 Score=136.52 Aligned_cols=378 Identities=14% Similarity=0.072 Sum_probs=271.3
Q ss_pred CChHHHHHHHhcCCC--CCc--chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHH-H--HHHHcCccchHHHH
Q 048578 79 SQIAYAHLVFNQIIN--PST--FAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPI-L--LKACGDLRQVKGVH 151 (519)
Q Consensus 79 ~~~~~A~~~~~~~~~--~~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-l--l~~~~~~~~~~~~~ 151 (519)
|+++.|+..|+++.+ |+. ..+ .++..+...|+.++|+..+++.. .|+...+.. + ...+...|+..++.
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999965 443 234 88888889999999999999998 354443333 3 34666778866666
Q ss_pred HHHHHhCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC--CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 048578 152 SLVVKSKDFNS-VIHSLTRLITFYCNFGDVKSAQLLFDQMTE--KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEV 228 (519)
Q Consensus 152 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 228 (519)
+.+.+.-...| +...+..++..+...++.++|+..++++.. |+...+..++..+...++..+|++.++++.+.. +-
T Consensus 123 ely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~ 201 (822)
T PRK14574 123 ALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PT 201 (822)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CC
Confidence 66665443444 466777888899999999999999999987 444444444444444666666999999999874 33
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhH-----HHHHHHHH---H--hcCC---HHHHHHHHhhcCC--
Q 048578 229 NELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKL-----GAALTDMY---A--KCGY---IEEALRVFKIVLE-- 293 (519)
Q Consensus 229 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~l~~~~---~--~~g~---~~~a~~~~~~~~~-- 293 (519)
+...+..+..+..+.|-...|.++..+-...-.+.+..- ...+++.- . ...+ .+.|+.-++.+..
T Consensus 202 n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~ 281 (822)
T PRK14574 202 SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRW 281 (822)
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhc
Confidence 566778888889999988888877665332111111000 00111000 0 1112 3445555555433
Q ss_pred -CCh---h----hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcC---
Q 048578 294 -KNV---C----TWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYK--- 362 (519)
Q Consensus 294 -~~~---~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--- 362 (519)
+++ . +.--.+-++...|++.++++.|+.+...|.+....+-..+..+|...+++++|..+++.+....+
T Consensus 282 ~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~ 361 (822)
T PRK14574 282 GKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF 361 (822)
T ss_pred cCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc
Confidence 212 1 12234667888999999999999999988665566888999999999999999999999976321
Q ss_pred -CCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-------------C--CHH-HHHHHHHHHccccCCCCHHHHHHH
Q 048578 363 -VEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PME-------------P--NAV-LWGSLLTACASADDGANVELAEIA 424 (519)
Q Consensus 363 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~-------------p--~~~-~~~~ll~~~~~~~~~~~~~~a~~~ 424 (519)
.+++......|.-+|...+++++|..+++++ ... | |-. ....++..+.. .|+..+|++.
T Consensus 362 ~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~---~gdl~~Ae~~ 438 (822)
T PRK14574 362 RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA---LNDLPTAQKK 438 (822)
T ss_pred CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH---cCCHHHHHHH
Confidence 2334444578899999999999999999988 211 2 222 33444555777 8999999999
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048578 425 MERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 425 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
++++....|.|+.....++.++...|...+|++.++.....
T Consensus 439 le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 439 LEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999777665
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.68 E-value=7e-13 Score=130.26 Aligned_cols=480 Identities=12% Similarity=0.045 Sum_probs=330.3
Q ss_pred hhhhhhhhhccccCCCCCCCCCcccHH-HHHHhccCchHHHHHHHHHHHhcCCCCchhHHHHHHHH---HhhcCCCChHH
Q 048578 8 NSQLTHFTNSANSHKNSNTATKSHHHL-PLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLI---ESLVNSSQIAY 83 (519)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~~~~~~~~~ 83 (519)
.+++..|+.+++ .++..+||+..-. ..+--|.....+...|++..+. .| ...++++... ...-....+..
T Consensus 181 ~~al~yyk~al~--inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqL--dp--~~v~alv~L~~~~l~~~d~~s~~~ 254 (1018)
T KOG2002|consen 181 RGALKYYKKALR--INPACKADVRIGIGHCFWKLGMSEKALLAFERALQL--DP--TCVSALVALGEVDLNFNDSDSYKK 254 (1018)
T ss_pred HHHHHHHHHHHh--cCcccCCCccchhhhHHHhccchhhHHHHHHHHHhc--Ch--hhHHHHHHHHHHHHHccchHHHHH
Confidence 355667777665 3345556653322 1223345556666666666544 33 4444443322 12222345666
Q ss_pred HHHHHhcC---CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCcchHHHHHHHHcCccchHHHHHHHHHhC
Q 048578 84 AHLVFNQI---INPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLD--PDSFTYPILLKACGDLRQVKGVHSLVVKSK 158 (519)
Q Consensus 84 A~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 158 (519)
+..++... ...|+...+.|...|.-.|+++.+..+...+...... .-..+|-.+-+++...|+.++++..+.+..
T Consensus 255 ~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~ 334 (1018)
T KOG2002|consen 255 GVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL 334 (1018)
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 77766665 3367888999999999999999999999998875311 123357788889999999999998887766
Q ss_pred CCCCchhH--HHHHHHHHHhcCChHHHHHHHhcCCC--C-chhHHHHHHHHHHHcC----ChhHHHHHHHHHHhCCCCCC
Q 048578 159 DFNSVIHS--LTRLITFYCNFGDVKSAQLLFDQMTE--K-NVVTWTAMINGHVKQK----NYREGIDLFRKMRDSGVEVN 229 (519)
Q Consensus 159 ~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~~~~~~ 229 (519)
...++..+ +.-+...|.+.|+++.+...|+.+.. | +..+...|...|...+ ..++|..++.+....- +.|
T Consensus 335 k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d 413 (1018)
T KOG2002|consen 335 KADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVD 413 (1018)
T ss_pred ccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-ccc
Confidence 56666544 44567889999999999999998865 3 4456666777777664 4567777777766553 446
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHH----HHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-------Ch--
Q 048578 230 ELTLVSVLSACANLGASELGKWVHEFV----NKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK-------NV-- 296 (519)
Q Consensus 230 ~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~-- 296 (519)
...|..+...+....-+ .....+..+ ...+.++.+...|.+...+...|++..|...|...... +.
T Consensus 414 ~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~ 492 (1018)
T KOG2002|consen 414 SEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGK 492 (1018)
T ss_pred HHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccc
Confidence 66777666666554433 335555544 45566788999999999999999999999999876332 22
Q ss_pred ----hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHH
Q 048578 297 ----CTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDV-TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYG 371 (519)
Q Consensus 297 ----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 371 (519)
.+-..+....-..++++.|.+.|..+.+. .|+-. .|.-++......+...+|...+..... ....++..++
T Consensus 493 ~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~ars 568 (1018)
T KOG2002|consen 493 STNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARS 568 (1018)
T ss_pred cchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHH
Confidence 12334556666778999999999999875 56544 555555444556788999999999988 4556666777
Q ss_pred HHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHcccc---------CCCCHHHHHHHHHHHHhhCCCCCch
Q 048578 372 CLVDLLCRARLLDEAYEVIRNM----PMEPNAVLWGSLLTACASAD---------DGANVELAEIAMERLIKLEPFNDGN 438 (519)
Q Consensus 372 ~l~~~~~~~~~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~~---------~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (519)
.+...+.+...+.-|.+-|..+ ...+|..+..+|.+.|...- ..+..++|.+.|.++++.+|.|..+
T Consensus 569 l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yA 648 (1018)
T KOG2002|consen 569 LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYA 648 (1018)
T ss_pred HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhh
Confidence 7888999998888888855554 33467777777776554311 2345788999999999999999999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCCChhHHHHHHHHHHHH
Q 048578 439 YVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAIS 508 (519)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (519)
-+-++-+++..|++.+|..+|.++++......+. |+-+. -.+...+++..+.++.+....+
T Consensus 649 ANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv--~lNla-------h~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 649 ANGIGIVLAEKGRFSEARDIFSQVREATSDFEDV--WLNLA-------HCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred ccchhhhhhhccCchHHHHHHHHHHHHHhhCCce--eeeHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999876632111 32222 1223466777777777776433
No 27
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.65 E-value=4e-16 Score=143.14 Aligned_cols=256 Identities=16% Similarity=0.097 Sum_probs=109.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcC
Q 048578 201 MINGHVKQKNYREGIDLFRKMRDSGVEVNEL-TLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCG 279 (519)
Q Consensus 201 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 279 (519)
+...+.+.|++++|++++++......+|+.. .|..+...+...++++.|...++.+...+ +.++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccc
Confidence 3555666677777777765443332123333 33333444555667777777777776654 2355556666666 5777
Q ss_pred CHHHHHHHHhhcCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 048578 280 YIEEALRVFKIVLE--KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSG-IKPDDVTLIAVLTACSHAGLIEKGKEIFYN 356 (519)
Q Consensus 280 ~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 356 (519)
++++|.+++....+ ++...+..++..+...++++++..+++.+.... ..++...|..+...+.+.|+.++|...+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 78888777766533 355667777888888899999999999876533 345666888888899999999999999999
Q ss_pred cHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 357 MRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM--PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
..+. .|.+......++..+...|+.+++.++++.. ....|...+..+..++.. .|+.++|...++++.+.+|+
T Consensus 172 al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~---lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 172 ALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ---LGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH---HT-HHHHHHHHHHHHHHSTT
T ss_pred HHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc---cccccccccccccccccccc
Confidence 9883 3345777888999999999999988887776 223345567788888888 89999999999999999999
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 435 NDGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
|+.....++.++...|+.++|.++.++.-
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999987753
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=1.1e-12 Score=118.15 Aligned_cols=367 Identities=14% Similarity=0.088 Sum_probs=252.4
Q ss_pred CCChHHHHHHHhcCCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcch--------HHHHHHH-------
Q 048578 78 SSQIAYAHLVFNQIIN--PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFT--------YPILLKA------- 140 (519)
Q Consensus 78 ~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--------~~~ll~~------- 140 (519)
.|++++|+..|+.+.+ |+..+--.|+-++..-|+.++..+.|.+|......||..- -..++..
T Consensus 289 ~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~l 368 (840)
T KOG2003|consen 289 AGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHL 368 (840)
T ss_pred cccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHH
Confidence 3888888888887743 6654433344445557888888888888877543333221 1122221
Q ss_pred --HcCccc--hHHHHHHHHHhC--CCCCchh-------------HH--------HHHHHHHHhcCChHHHHHHHhcCCCC
Q 048578 141 --CGDLRQ--VKGVHSLVVKSK--DFNSVIH-------------SL--------TRLITFYCNFGDVKSAQLLFDQMTEK 193 (519)
Q Consensus 141 --~~~~~~--~~~~~~~~~~~~--~~~~~~~-------------~~--------~~l~~~~~~~g~~~~A~~~~~~~~~~ 193 (519)
..+.+. +++..-...+.. -+.|+-. .+ -.-..-|.+.|+++.|.+++..+.+.
T Consensus 369 k~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~k 448 (840)
T KOG2003|consen 369 KNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKK 448 (840)
T ss_pred HHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhc
Confidence 111111 222211111110 0111100 00 01123367789999999988888765
Q ss_pred chhHH----HHHH-HHHHH-cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhH
Q 048578 194 NVVTW----TAMI-NGHVK-QKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKL 267 (519)
Q Consensus 194 ~~~~~----~~li-~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 267 (519)
|..+- |.|. --|.+ ..++..|.++-+...... +-+......-.+.....|++++|...+.+.+..+-......
T Consensus 449 dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~eal 527 (840)
T KOG2003|consen 449 DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEAL 527 (840)
T ss_pred cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHH
Confidence 43322 2222 22333 345777777766655432 22333333334445567899999999999998775555555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhc---CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 048578 268 GAALTDMYAKCGYIEEALRVFKIV---LEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHA 344 (519)
Q Consensus 268 ~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 344 (519)
|| +...+-..|++++|+++|-++ ...+......+...|-...+..+|++++.+.... ++.|......|...|-+.
T Consensus 528 fn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqe 605 (840)
T KOG2003|consen 528 FN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQE 605 (840)
T ss_pred HH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcc
Confidence 55 445577889999999999776 4467888888899999999999999999776542 344566888999999999
Q ss_pred CcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHccccCCCCHHHHHH
Q 048578 345 GLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAVLWGSLLTACASADDGANVELAEI 423 (519)
Q Consensus 345 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~ 423 (519)
|+-..|.+.+-.--+ =++.+..+...|..-|....-+++|+..|++. -++|+..-|..++..|.+. .|++++|..
T Consensus 606 gdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rr--sgnyqka~d 681 (840)
T KOG2003|consen 606 GDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRR--SGNYQKAFD 681 (840)
T ss_pred cchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh--cccHHHHHH
Confidence 999999988766544 46778889888999999999999999999999 7899999999999987763 899999999
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 048578 424 AMERLIKLEPFNDGNYVLMSNIYAAKAQ 451 (519)
Q Consensus 424 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (519)
+++...+.-|.+..++..|.+++...|.
T Consensus 682 ~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 682 LYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999999999999999999887774
No 29
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=2.1e-13 Score=124.00 Aligned_cols=354 Identities=16% Similarity=0.131 Sum_probs=244.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-cchHHHHHHHHcCccchHHHHHHHHHhCCCCCc-hhHHHHHHHHHHhc
Q 048578 100 NTVIRGYAEAGLGHRGIQLYTQMIGNGLDPD-SFTYPILLKACGDLRQVKGVHSLVVKSKDFNSV-IHSLTRLITFYCNF 177 (519)
Q Consensus 100 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 177 (519)
-....-|.++|++++|++.|.+.++ +.|| +.-|...-.+|...|+++++.+.-.+.-++.|+ +..+..-.+++-..
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQL 196 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhh
Confidence 3445566778888888888888887 5677 556666777777788877777777666556665 44555555666666
Q ss_pred CChHHHHHHH------hcC-------------------------CC------CchhHHHHHHHHHH--------------
Q 048578 178 GDVKSAQLLF------DQM-------------------------TE------KNVVTWTAMINGHV-------------- 206 (519)
Q Consensus 178 g~~~~A~~~~------~~~-------------------------~~------~~~~~~~~li~~~~-------------- 206 (519)
|++++|+.=+ +.. .+ |+....++....+.
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ks 276 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKS 276 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccc
Confidence 6666654211 110 00 22222222211111
Q ss_pred -----------HcC---ChhHHHHHHHHHHhC-CCCC-----CHH----HHHHHH--HHHhccCChHHHHHHHHHHHHcC
Q 048578 207 -----------KQK---NYREGIDLFRKMRDS-GVEV-----NEL----TLVSVL--SACANLGASELGKWVHEFVNKNC 260 (519)
Q Consensus 207 -----------~~~---~~~~a~~~~~~m~~~-~~~~-----~~~----~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~ 260 (519)
..+ .+.+|...+.+--.. -..+ |.. .-..++ ..+.-.|+.-.+..-|+...+..
T Consensus 277 Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~ 356 (606)
T KOG0547|consen 277 DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD 356 (606)
T ss_pred hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC
Confidence 001 122222222111000 0011 111 111112 22445678888999999988876
Q ss_pred CCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHH
Q 048578 261 IILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPD-DVTLIA 336 (519)
Q Consensus 261 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ 336 (519)
.. +...|--+..+|....+.++....|++... .|+.+|..-.+...-.+++++|..=|++.+.. .|+ ...|..
T Consensus 357 ~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQ 433 (606)
T KOG0547|consen 357 PA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAYIQ 433 (606)
T ss_pred cc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHH
Confidence 33 334477777889999999999999988754 47788999888888899999999999999874 454 457888
Q ss_pred HHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---------HHHHHHHH
Q 048578 337 VLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN---------AVLWGSLL 406 (519)
Q Consensus 337 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~---------~~~~~~ll 406 (519)
+.-+..+.+.+++++..|++..+ .++..+..|+.....+...++++.|.+.|+.. .+.|. ..+...++
T Consensus 434 l~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l 511 (606)
T KOG0547|consen 434 LCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL 511 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh
Confidence 88888899999999999999998 56777889999999999999999999999987 44444 22222232
Q ss_pred HHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 407 TACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
. +.- .+++..|..++.++++++|....+|..|+..-.+.|+.++|+++|++-..
T Consensus 512 ~-~qw---k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 512 V-LQW---KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred h-hch---hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 234 68999999999999999999999999999999999999999999998653
No 30
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.63 E-value=2.2e-12 Score=126.82 Aligned_cols=399 Identities=15% Similarity=0.106 Sum_probs=237.1
Q ss_pred CCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCCCC------cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcc
Q 048578 59 DNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPS------TFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSF 132 (519)
Q Consensus 59 ~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 132 (519)
+.+|.+.+.|.+.|.-. |+++.+..+.+.+...+ ..+|-.+.++|-..|++++|...|.+..+. .+|.+
T Consensus 267 ~~nP~~l~~LAn~fyfK---~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~ 341 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFK---KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNF 341 (1018)
T ss_pred CCCcHHHHHHHHHHhhc---ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCc
Confidence 44677777777777666 78888777777664322 234666777777788888888877666653 34443
Q ss_pred hHH--HHHHHHcCccchHHHHHHHHHhCC-CCCchhHHHHHHHHHHhcC----ChHHHHHHHhcCCC---CchhHHHHHH
Q 048578 133 TYP--ILLKACGDLRQVKGVHSLVVKSKD-FNSVIHSLTRLITFYCNFG----DVKSAQLLFDQMTE---KNVVTWTAMI 202 (519)
Q Consensus 133 ~~~--~ll~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~---~~~~~~~~li 202 (519)
++. -+...+.+.|+.+.....+.+.-. .+.+..+...|...|...+ ..+.|..++..... .|...|-.+.
T Consensus 342 ~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~la 421 (1018)
T KOG2002|consen 342 VLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELA 421 (1018)
T ss_pred cccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 332 234445555553322222222111 2333444455555555443 34445555544433 2344454444
Q ss_pred HHHHHcCChhHHHHHHHHH----HhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc---CCC------cchhHHH
Q 048578 203 NGHVKQKNYREGIDLFRKM----RDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKN---CII------LNDKLGA 269 (519)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~m----~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~------~~~~~~~ 269 (519)
..+-+..-+.. +.+|... ...+-.+.....+.+...+...|+++.|...|...... ... ++..+-.
T Consensus 422 ql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~Y 500 (1018)
T KOG2002|consen 422 QLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKY 500 (1018)
T ss_pred HHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHH
Confidence 44443333222 4433322 22333344555555555555555555555555554443 001 1111122
Q ss_pred HHHHHHHhcC----------------------------------CHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCCh
Q 048578 270 ALTDMYAKCG----------------------------------YIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCG 312 (519)
Q Consensus 270 ~l~~~~~~~g----------------------------------~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 312 (519)
.+..++-..+ ...+|..++..+.. .++..+..+...+.+...+
T Consensus 501 Nlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 501 NLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhh
Confidence 2333333333 44445555544432 3455666666666666666
Q ss_pred HHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhcc------------CcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHh
Q 048578 313 EEAVKMFWQMQMS-GIKPDDVTLIAVLTACSHA------------GLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCR 379 (519)
Q Consensus 313 ~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (519)
..|.+-|...... ...+|..+...|.+.|.+. +..++|+++|.++.+ ..+.|...-|-+.-.++.
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAE 658 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhh
Confidence 6666655554332 1235666666666655432 457788888888887 456677777888888999
Q ss_pred cCChHHHHHHHHhC--CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhC--CCCCchHHHHHHHHHhcCCchHH
Q 048578 380 ARLLDEAYEVIRNM--PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLE--PFNDGNYVLMSNIYAAKAQWDDA 455 (519)
Q Consensus 380 ~~~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A 455 (519)
.|++.+|..+|.+. ...-...+|..+...|.. .|++-.|++.|+...+.. .+++.....|++++.+.|++.+|
T Consensus 659 kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e---~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ea 735 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREATSDFEDVWLNLAHCYVE---QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEA 735 (1018)
T ss_pred ccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHH---HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999988 223345678888889999 899999999999988754 44678889999999999999999
Q ss_pred HHHHHHHHhCCCc
Q 048578 456 GKMRRLMKERNIV 468 (519)
Q Consensus 456 ~~~~~~m~~~~~~ 468 (519)
.+.+.......+.
T Consensus 736 k~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 736 KEALLKARHLAPS 748 (1018)
T ss_pred HHHHHHHHHhCCc
Confidence 9998887765554
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.62 E-value=7.3e-13 Score=129.24 Aligned_cols=316 Identities=14% Similarity=0.073 Sum_probs=223.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHH
Q 048578 108 EAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLF 187 (519)
Q Consensus 108 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 187 (519)
-.|+.++|.+++.+.++. .+.....|.+|..+|-..|+.+++...+
T Consensus 151 arg~~eeA~~i~~EvIkq----------------------------------dp~~~~ay~tL~~IyEqrGd~eK~l~~~ 196 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQ----------------------------------DPRNPIAYYTLGEIYEQRGDIEKALNFW 196 (895)
T ss_pred HhCCHHHHHHHHHHHHHh----------------------------------CccchhhHHHHHHHHHHcccHHHHHHHH
Confidence 347888888888777763 2445666777777777777777777665
Q ss_pred hcCC---CCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcc
Q 048578 188 DQMT---EKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILN 264 (519)
Q Consensus 188 ~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 264 (519)
-... ..|...|-.+.....+.|.+++|.-+|.+..+.. +++...+-.-...|-+.|+...|..-|.++.....+.+
T Consensus 197 llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d 275 (895)
T KOG2076|consen 197 LLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVD 275 (895)
T ss_pred HHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchh
Confidence 4432 2455677777777777788888888887777764 33444444555667777887777777777777653333
Q ss_pred hhH----HHHHHHHHHhcCCHHHHHHHHhhcCCC-----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC---------
Q 048578 265 DKL----GAALTDMYAKCGYIEEALRVFKIVLEK-----NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSG--------- 326 (519)
Q Consensus 265 ~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g--------- 326 (519)
..- ....+..+...++.+.|.+.++..... +...++.++..+.+...++.+.....++....
T Consensus 276 ~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~ 355 (895)
T KOG2076|consen 276 IERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWD 355 (895)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhh
Confidence 222 233455566667777777777766441 44567778888888888888887777766521
Q ss_pred ------------------CCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcC--CCCChhHHHHHHHHHHhcCChHHH
Q 048578 327 ------------------IKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYK--VEPNVKHYGCLVDLLCRARLLDEA 386 (519)
Q Consensus 327 ------------------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A 386 (519)
+.++...+ -++-++.+.+..+....+...+.+ .. ..-+...|.-+.++|...|++.+|
T Consensus 356 ~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~-~n~~~~d~~dL~~d~a~al~~~~~~~~A 433 (895)
T KOG2076|consen 356 TDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVE-DNVWVSDDVDLYLDLADALTNIGKYKEA 433 (895)
T ss_pred hhhhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHH-hcCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 22232231 222244444444444445555554 34 334567888999999999999999
Q ss_pred HHHHHhC-CCCC--CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 387 YEVIRNM-PMEP--NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 387 ~~~~~~~-~~~p--~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
+.+|..+ ...+ +...|..+...|.. .|.+++|.+.|++++...|++..+...|+.++.+.|+.|+|.+.++.+.
T Consensus 434 l~~l~~i~~~~~~~~~~vw~~~a~c~~~---l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 434 LRLLSPITNREGYQNAFVWYKLARCYME---LGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHhcCccccchhhhHHHHHHHHH---HhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999 2222 56688889888999 9999999999999999999999999999999999999999999999886
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=9e-13 Score=126.57 Aligned_cols=145 Identities=15% Similarity=0.029 Sum_probs=98.9
Q ss_pred cCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 048578 278 CGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIF 354 (519)
Q Consensus 278 ~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 354 (519)
..+.+...++++.+.+ .++.....+...+...|+.++|.+++++..+. .|+.... ++.+....++.+++.+..
T Consensus 242 ~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~ 317 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVL 317 (398)
T ss_pred hcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHH
Confidence 3344455555555433 35666777777777888888888888777663 4444222 233334557788888888
Q ss_pred HHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhh
Q 048578 355 YNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKL 431 (519)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 431 (519)
+...+ ..+-|...+..+...+.+.+++++|.+.|+.. ...|+..++..+...+.. .|+.++|.+++++...+
T Consensus 318 e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~---~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 318 RQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDR---LHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhh
Confidence 77776 34455566777788888888888888888877 667888777777777777 77888888888877654
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=8.2e-12 Score=111.95 Aligned_cols=363 Identities=12% Similarity=0.076 Sum_probs=238.6
Q ss_pred CCcccHHHHHHhccCchHHH---HHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcC----CCCCcchHH
Q 048578 28 TKSHHHLPLLQKCTHLVQFK---QVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQI----INPSTFAFN 100 (519)
Q Consensus 28 p~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~ 100 (519)
-+..|+.+++...++..+.+ +++++-.....+.+..++|.++.+-+-. .. .+++.+| ..||..|+|
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~---~~----K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS---VG----KKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh---cc----HHHHHHHHHhhcCCchHhHH
Confidence 36778899998887776664 4555555555677888899988765544 22 4455555 459999999
Q ss_pred HHHHHHHhcCChh----HHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHH-----HHHHhC--CC---CC-chh
Q 048578 101 TVIRGYAEAGLGH----RGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHS-----LVVKSK--DF---NS-VIH 165 (519)
Q Consensus 101 ~ll~~~~~~g~~~----~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~-----~~~~~~--~~---~~-~~~ 165 (519)
+++++.++.|+++ .|++++.+|++.|+.|...+|..++..+++.++..++.. .+.+.. .+ .| +..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 9999999999886 457788999999999999999999999999888432222 221111 12 22 355
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC--------Cc---hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 048578 166 SLTRLITFYCNFGDVKSAQLLFDQMTE--------KN---VVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLV 234 (519)
Q Consensus 166 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 234 (519)
.|...+..|....+.+.|.++..-+.. ++ ..-|..+....++....+.....|+.|.-.-.-|+..+..
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHH
Confidence 677888889999999999888766543 22 1235567777888899999999999998887788999999
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHH--cCCh
Q 048578 235 SVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAI--HGCG 312 (519)
Q Consensus 235 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~--~g~~ 312 (519)
.++++....+.++-..+++..+...|...+.....-++..+++.. ..|+...-..+-....+ ..-+
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~ 505 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCAADIK 505 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888775444433333333333221 12222211112111111 1111
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHH---HHHHHHHhcCChHHHHHH
Q 048578 313 EEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYG---CLVDLLCRARLLDEAYEV 389 (519)
Q Consensus 313 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~A~~~ 389 (519)
+.....-.+|.+. .......+.++-.+.+.|..++|.++|..+.+..+--|.....+ -+++.-.+.++...|...
T Consensus 506 e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~ 583 (625)
T KOG4422|consen 506 EAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEV 583 (625)
T ss_pred HHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHH
Confidence 2222233344443 33445566666678888999999999988865433334444444 555666677888888888
Q ss_pred HHhC---CCCCCHHHHHHHHHHHcc
Q 048578 390 IRNM---PMEPNAVLWGSLLTACAS 411 (519)
Q Consensus 390 ~~~~---~~~p~~~~~~~ll~~~~~ 411 (519)
++-| ....-...-+.+...|.-
T Consensus 584 lQ~a~~~n~~~~E~La~RI~e~f~i 608 (625)
T KOG4422|consen 584 LQLASAFNLPICEGLAQRIMEDFAI 608 (625)
T ss_pred HHHHHHcCchhhhHHHHHHHHhcCc
Confidence 8777 211112234445555554
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=3.9e-12 Score=122.15 Aligned_cols=276 Identities=11% Similarity=0.103 Sum_probs=212.2
Q ss_pred hcCChHHHHHHHhcCCCC--chhH-HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH--HHHHHHhccCChHHHH
Q 048578 176 NFGDVKSAQLLFDQMTEK--NVVT-WTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLV--SVLSACANLGASELGK 250 (519)
Q Consensus 176 ~~g~~~~A~~~~~~~~~~--~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~ 250 (519)
..|+++.|++.+....+. ++.. |.....+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 369999999888876552 2333 333345558999999999999999765 45554333 3356788899999999
Q ss_pred HHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh-----------hhHHHHHHHHHHcCChHHHHHHH
Q 048578 251 WVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNV-----------CTWNSIIGGLAIHGCGEEAVKMF 319 (519)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~~l~~~~~~~g~~~~a~~~~ 319 (519)
..++.+.+.. |-++.+...+...|.+.|++++|.+++..+.+... .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998887 66788899999999999999999999988865321 13334444444556667777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 048578 320 WQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN 398 (519)
Q Consensus 320 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~ 398 (519)
+.+.+. .+.+......+..++...|+.++|.+++++..+. +|+.... ++.+....++.+++++.++.. ...|+
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 776443 3456778889999999999999999999998772 4454322 344445669999999999888 66675
Q ss_pred HH-HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 399 AV-LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 399 ~~-~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
.. .+..+...|.. .+++++|.+.|+++.+..|+ ...+..++.++.+.|+.++|.+++++-..
T Consensus 327 ~~~l~l~lgrl~~~---~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMK---HGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHH---CCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 54 56777788999 99999999999999999998 56678999999999999999999987654
No 35
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=4.1e-13 Score=126.97 Aligned_cols=279 Identities=13% Similarity=0.056 Sum_probs=219.3
Q ss_pred ChHHHHHHHhcCCC--Cch-hHHHHHHHHHHHcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCChHHHHHHH
Q 048578 179 DVKSAQLLFDQMTE--KNV-VTWTAMINGHVKQKNYREGIDLFRKMRDSGV--EVNELTLVSVLSACANLGASELGKWVH 253 (519)
Q Consensus 179 ~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~ 253 (519)
+..+|...|..++. +|+ .....+..+|...+++++|.++|+.+.+... .-+..+|.+.+--+-+ +-+..++
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 46788888888655 343 4456788899999999999999999987521 2256678777654322 2223333
Q ss_pred HHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 048578 254 EFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKN---VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPD 330 (519)
Q Consensus 254 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 330 (519)
.+-+-.-.+..+.+|.++.++|.-+++.+.|++.|++.++-| ..+|+.+.+-+.....+|.|...|+..+. +.|.
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 332222236778999999999999999999999999997754 46788888888999999999999998875 4555
Q ss_pred HH-HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 048578 331 DV-TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLT 407 (519)
Q Consensus 331 ~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 407 (519)
.. .|..+...|.++++++.|+-.|+++.+ --+.+......+...+.+.|+.++|+++++++ .++| |...--.-..
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 44 788889999999999999999999987 23445667778889999999999999999998 4455 3333333444
Q ss_pred HHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 048578 408 ACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 408 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (519)
.+.. .+++++|.+.++++.+.-|++...|..++..|.+.|+.+.|+.-|--+.+.+.+
T Consensus 566 il~~---~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 566 ILFS---LGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHh---hcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 5555 789999999999999999999999999999999999999999988887765554
No 36
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.57 E-value=2.1e-10 Score=108.35 Aligned_cols=386 Identities=13% Similarity=0.083 Sum_probs=260.9
Q ss_pred HHHHHhhcCCCChHHHHHHHhcC---CCCCcchHHHHHHHHHhcCChhHHHHHHHHH----HhCCCCCCcchHHHHHHHH
Q 048578 69 AKLIESLVNSSQIAYAHLVFNQI---INPSTFAFNTVIRGYAEAGLGHRGIQLYTQM----IGNGLDPDSFTYPILLKAC 141 (519)
Q Consensus 69 l~~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m----~~~g~~p~~~~~~~ll~~~ 141 (519)
.-+|++. .-|+.|.+++++. ++.+...|.+....--.+|+.+...+++++- ...|+..+...|-.=...|
T Consensus 413 wlAlarL---etYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 413 WLALARL---ETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 3445555 6667777776655 3456666766666666677777776666543 3457777777666666666
Q ss_pred cCccc---hHHHHHHHHHhCCCCC--chhHHHHHHHHHHhcCChHHHHHHHhcCCC---CchhHHHHHHHHHHHcCChhH
Q 048578 142 GDLRQ---VKGVHSLVVKSKDFNS--VIHSLTRLITFYCNFGDVKSAQLLFDQMTE---KNVVTWTAMINGHVKQKNYRE 213 (519)
Q Consensus 142 ~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 213 (519)
-..|. .+.+.......| +.. -..++..-...|.+.+.++-|..+|....+ .+...|......--..|..+.
T Consensus 490 e~agsv~TcQAIi~avigig-vEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIG-VEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred hhcCChhhHHHHHHHHHhhc-cccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHH
Confidence 66665 333333333333 221 245667777777788888888888777765 344566666666666777788
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 048578 214 GIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE 293 (519)
Q Consensus 214 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 293 (519)
...+|++.... ++-....|......+-..||...|..++..+.+.. +.+...+-+-+.......++++|..+|.+...
T Consensus 569 l~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 569 LEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 88888887765 23334444444555666788888888888877765 44667777777888888888888888877643
Q ss_pred --CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHH
Q 048578 294 --KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDV-TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHY 370 (519)
Q Consensus 294 --~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 370 (519)
+....|.--+......++.++|.+++++..+. -|+-. .|..+.+.+-+.++.+.|...|..-.+ .++-.+..|
T Consensus 647 ~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLW 722 (913)
T KOG0495|consen 647 ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLW 722 (913)
T ss_pred cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHH
Confidence 45666666666666777888888888777763 55544 677777788888888888887776665 455566677
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC--------------
Q 048578 371 GCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF-------------- 434 (519)
Q Consensus 371 ~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~-------------- 434 (519)
-.|.+.-.+.|++-+|..++++. -..| +...|...|+.-.+ .|+.+.|..++.++++.-|.
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR---~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~ 799 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELR---AGNKEQAELLMAKALQECPSSGLLWAEAIWLEPR 799 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCccchhHHHHHHhccC
Confidence 77777777788888888888877 2234 56678888888777 78888888877777653332
Q ss_pred ----------------CCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 435 ----------------NDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 435 ----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
|+.....++..+....++++|.+.|++....+.
T Consensus 800 ~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 800 PQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred cccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 455666677777777778888888887766443
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=7.6e-11 Score=107.19 Aligned_cols=412 Identities=11% Similarity=0.120 Sum_probs=294.0
Q ss_pred CChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcc-hHHHHHHHHcCccchHHHHHHH
Q 048578 79 SQIAYAHLVFNQIIN---PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSF-TYPILLKACGDLRQVKGVHSLV 154 (519)
Q Consensus 79 ~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~~~~ 154 (519)
+++..|..+|+.... .+...|-..+..=.++..+..|..+++..... -|-+. .|--.+..--..|++..+.+.+
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 677788999998854 56677888888888999999999999998873 34433 2222223333445545555555
Q ss_pred HHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC--CCchhHHHHHHHHHHHcCChhHHHHHHHHHHhC-CC-CCCH
Q 048578 155 VKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMT--EKNVVTWTAMINGHVKQKNYREGIDLFRKMRDS-GV-EVNE 230 (519)
Q Consensus 155 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~-~~~~ 230 (519)
.+--...|+...|++.|+.-.+-..++.|..++++.. .|++.+|--....=-+.|+...+..+|+...+. |- ..+.
T Consensus 165 erW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e 244 (677)
T KOG1915|consen 165 ERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAE 244 (677)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHH
Confidence 5544478999999999999999999999999999875 489999988888888999999999999887764 21 1122
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcc--hhHHHHHHHHHHhcCCHHHHHHH--------HhhcCCC---Chh
Q 048578 231 LTLVSVLSACANLGASELGKWVHEFVNKNCIILN--DKLGAALTDMYAKCGYIEEALRV--------FKIVLEK---NVC 297 (519)
Q Consensus 231 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~--------~~~~~~~---~~~ 297 (519)
..|.+....-.+...++.|..+|+-.+..- |.+ ...|......--+-|+.....+. |+.+++. |-.
T Consensus 245 ~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYD 323 (677)
T KOG1915|consen 245 ILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYD 323 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCch
Confidence 334444444455677888888888887753 333 45666666666666765555444 2333443 445
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--H-----HHHHHHHH---hccCcHHHHHHHHHHcHHhcCCCCCh
Q 048578 298 TWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDV--T-----LIAVLTAC---SHAGLIEKGKEIFYNMRRDYKVEPNV 367 (519)
Q Consensus 298 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~-----~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~ 367 (519)
+|--.+..-...|+.+...++|++.+.. ++|-.. . |..+=-+| ....+.+.+.++++...+ -++...
T Consensus 324 sWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkk 400 (677)
T KOG1915|consen 324 SWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKK 400 (677)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCccc
Confidence 6666777777889999999999999864 566332 1 22221122 356899999999999988 566566
Q ss_pred hHHHHHH----HHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 048578 368 KHYGCLV----DLLCRARLLDEAYEVIRNM-PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLM 442 (519)
Q Consensus 368 ~~~~~l~----~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 442 (519)
.||..+- ....++.++..|.+++... |.-|-..+|...|..-.. .++++....++++-++.+|.|..+|...
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElq---L~efDRcRkLYEkfle~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQ---LREFDRCRKLYEKFLEFSPENCYAWSKY 477 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHH---HhhHHHHHHHHHHHHhcChHhhHHHHHH
Confidence 6665444 4445788999999999888 989999999999999888 8899999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCCChhHHHHHHHHHH
Q 048578 443 SNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVA 506 (519)
Q Consensus 443 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (519)
+..-...|+++.|..+|+.......--.|...| . .++.-.-..++.+.+-.+.+++.
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellw---k----aYIdFEi~~~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLW---K----AYIDFEIEEGEFEKARALYERLL 534 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH---H----HhhhhhhhcchHHHHHHHHHHHH
Confidence 999999999999999999887765433333333 1 22222333445555555555544
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.2e-10 Score=105.74 Aligned_cols=256 Identities=12% Similarity=0.030 Sum_probs=200.7
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC--CcchhHHHHHHHHHHhcCC
Q 048578 203 NGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCI--ILNDKLGAALTDMYAKCGY 280 (519)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 280 (519)
.++....+.+++.+-.+.....|+.-+...-+....+.....|+|+|+.+|+.+.+.+. -.|..+|..++-+--...+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 45555667778888788887777766666666666666778899999999999988742 1245566655533322222
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHh
Q 048578 281 IEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRD 360 (519)
Q Consensus 281 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 360 (519)
+.---.....+-+=-+.|...+.+-|+-.++.++|...|++..+.+ +-....|+.+..-|....+...|+.-++...+
T Consensus 315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd- 392 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD- 392 (559)
T ss_pred HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh-
Confidence 2211111222233356677778888889999999999999998854 33345888888899999999999999999988
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCch
Q 048578 361 YKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGN 438 (519)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (519)
-.+.|-..|..|..+|.-.+...-|+-.|++. .++| |...|.+|...|.+ .++.++|++.|.+++..+..+..+
T Consensus 393 -i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k---l~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 393 -INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEK---LNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred -cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH---hccHHHHHHHHHHHHhccccchHH
Confidence 45668889999999999999999999999999 7778 66799999999999 999999999999999999778899
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 439 YVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
+..|+.+|.+.++.++|...+++-.+
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999988765
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.54 E-value=5.7e-11 Score=114.80 Aligned_cols=255 Identities=13% Similarity=0.017 Sum_probs=145.6
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC--Cch--hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 048578 170 LITFYCNFGDVKSAQLLFDQMTE--KNV--VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGA 245 (519)
Q Consensus 170 l~~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 245 (519)
...++.+.|+.+.|...+.+..+ |+. ...-.....+...|+++.|...++.+.+.. +-+......+...+...|+
T Consensus 124 aA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d 202 (409)
T TIGR00540 124 AAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGA 202 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhh
Confidence 34556677888888888877643 333 233334677778888888888888888764 2245567777778888888
Q ss_pred hHHHHHHHHHHHHcCCCcchhHHHHHHHHH---Hhc----CCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHH
Q 048578 246 SELGKWVHEFVNKNCIILNDKLGAALTDMY---AKC----GYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEA 315 (519)
Q Consensus 246 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~----g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a 315 (519)
++.+..++..+.+.+..........-..++ ... ...+...+.+....+ .+...+..+...+...|+.++|
T Consensus 203 ~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A 282 (409)
T TIGR00540 203 WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSA 282 (409)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHH
Confidence 888888888888876433322211111111 111 122233333443332 2556666666777777777777
Q ss_pred HHHHHHHHHCCCCCCHHH---HHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 048578 316 VKMFWQMQMSGIKPDDVT---LIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRN 392 (519)
Q Consensus 316 ~~~~~~m~~~g~~p~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 392 (519)
.+++++..+. .||... ...........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+.
T Consensus 283 ~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 283 QEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred HHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 7777776654 333321 01111122334556666666666555222222113444566666666666666666663
Q ss_pred --C-CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHh
Q 048578 393 --M-PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIK 430 (519)
Q Consensus 393 --~-~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~ 430 (519)
. ...|+...+..+...+.. .|+.++|.+++++...
T Consensus 361 a~a~~~~p~~~~~~~La~ll~~---~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 361 VAACKEQLDANDLAMAADAFDQ---AGDKAEAAAMRQDSLG 398 (409)
T ss_pred hHHhhcCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH
Confidence 2 445666666666666666 6666666666665543
No 40
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.54 E-value=3.5e-10 Score=106.92 Aligned_cols=438 Identities=12% Similarity=0.061 Sum_probs=330.5
Q ss_pred CCCCCcccHHHH--HHhc-cCchHHHHHH----HHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCC----
Q 048578 25 NTATKSHHHLPL--LQKC-THLVQFKQVH----AQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN---- 93 (519)
Q Consensus 25 ~~~p~~~~~~~~--l~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~---- 93 (519)
.++.+...+... |.-. +...-...++ ..+...|+..+..-|-.=...+-.. |..-.+..+...++.
T Consensus 435 ~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~a---gsv~TcQAIi~avigigvE 511 (913)
T KOG0495|consen 435 IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDA---GSVITCQAIIRAVIGIGVE 511 (913)
T ss_pred hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhc---CChhhHHHHHHHHHhhccc
Confidence 444555555543 3222 3333334444 3455567777776666666666666 777666666655532
Q ss_pred --CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCC-CCchhHHHHH
Q 048578 94 --PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDF-NSVIHSLTRL 170 (519)
Q Consensus 94 --~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l 170 (519)
.--.+|+.-...|.+.+-++-|..+|....+- ++-+...|.-....--..|..+.+..++.+.-.. +-....+...
T Consensus 512 eed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ 590 (913)
T KOG0495|consen 512 EEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMY 590 (913)
T ss_pred cchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHH
Confidence 23468888899999999999999999998873 2234445655555444555566666665554323 3345566667
Q ss_pred HHHHHhcCChHHHHHHHhcCCC---CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChH
Q 048578 171 ITFYCNFGDVKSAQLLFDQMTE---KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASE 247 (519)
Q Consensus 171 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 247 (519)
..-+-..|++..|..++...-+ .+...|-.-+..-....+++.|..+|.+.... .|+...|..-+...--.+..+
T Consensus 591 ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 591 AKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVE 668 (913)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHH
Confidence 7788889999999999988765 35567888889999999999999999988764 577777766666666788999
Q ss_pred HHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048578 248 LGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK---NVCTWNSIIGGLAIHGCGEEAVKMFWQMQM 324 (519)
Q Consensus 248 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 324 (519)
+|.+++++.++.- +.-...|-.+...+-+.++.+.|...|..-.+. .+..|-.+...--+.|++-.|..++++.+-
T Consensus 669 eA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 669 EALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred HHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 9999999988863 555677888889999999999999999887653 455688888888889999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH
Q 048578 325 SGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGS 404 (519)
Q Consensus 325 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ 404 (519)
.+ +-+...|...|+.-.+.|+.+.|.....+..+ .++.+...|..-|....+.++-....+.+++... |......
T Consensus 748 kN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~--dphVlla 822 (913)
T KOG0495|consen 748 KN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH--DPHVLLA 822 (913)
T ss_pred cC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhccC--CchhHHH
Confidence 64 55677999999999999999999999999988 5677788898888888888888888888887743 4445555
Q ss_pred HHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccEEEEC
Q 048578 405 LLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEIN 479 (519)
Q Consensus 405 ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 479 (519)
+...+-. ..+++.|.+.|.++.+.+|++..+|..+-..+.+.|.-++-.+++.+... ..|.-|..|.-+.
T Consensus 823 ia~lfw~---e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~avS 892 (913)
T KOG0495|consen 823 IAKLFWS---EKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAVS 892 (913)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHHh
Confidence 5566666 67899999999999999999999999999999999999999999988766 4555666664444
No 41
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=3.6e-11 Score=104.13 Aligned_cols=216 Identities=14% Similarity=0.101 Sum_probs=124.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 048578 109 AGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFD 188 (519)
Q Consensus 109 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 188 (519)
.++.++|+++|-+|.+. -+.+..+.-+|.+.|-..|..|.|+++-+
T Consensus 48 s~Q~dKAvdlF~e~l~~----------------------------------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ 93 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE----------------------------------DPETFEAHLTLGNLFRSRGEVDRAIRIHQ 93 (389)
T ss_pred hcCcchHHHHHHHHHhc----------------------------------CchhhHHHHHHHHHHHhcchHHHHHHHHH
Confidence 56778888888888872 23334456677788888888899988888
Q ss_pred cCCC-Cch------hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC
Q 048578 189 QMTE-KNV------VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCI 261 (519)
Q Consensus 189 ~~~~-~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 261 (519)
.+.+ ||. .+.-.|..-|...|-+|.|+.+|..+.+.+ .--......++..|-...+|++|...-.++.+.+-
T Consensus 94 ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~ 172 (389)
T COG2956 94 TLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGG 172 (389)
T ss_pred HHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC
Confidence 7765 443 234456677888888899999888887754 33455677788888888888888888887777653
Q ss_pred Ccch----hHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 048578 262 ILND----KLGAALTDMYAKCGYIEEALRVFKIVLEKN---VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTL 334 (519)
Q Consensus 262 ~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 334 (519)
.+.. ..|.-+...+....+++.|..++.+..+.| +.+--.+.......|+++.|.+.++...+.+..--..+.
T Consensus 173 q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl 252 (389)
T COG2956 173 QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVL 252 (389)
T ss_pred ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHH
Confidence 3321 122233333333444444444444443321 122222333444444444444444444443222222234
Q ss_pred HHHHHHHhccCcHHHHHHHHHHcHH
Q 048578 335 IAVLTACSHAGLIEKGKEIFYNMRR 359 (519)
Q Consensus 335 ~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (519)
..|..+|.+.|+.++....+..+.+
T Consensus 253 ~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 253 EMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4444444444444444444444433
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.52 E-value=8.9e-14 Score=127.62 Aligned_cols=251 Identities=14% Similarity=0.160 Sum_probs=109.7
Q ss_pred HHHHHHHhcCChHHHHHHHhcC-CC----CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 048578 169 RLITFYCNFGDVKSAQLLFDQM-TE----KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANL 243 (519)
Q Consensus 169 ~l~~~~~~~g~~~~A~~~~~~~-~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 243 (519)
.+...+.+.|++++|+++++.. .. .|...|..+...+...++++.|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 5577788999999999999543 22 24555666777778899999999999999876533 45566666666 688
Q ss_pred CChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC-----CCChhhHHHHHHHHHHcCChHHHHHH
Q 048578 244 GASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVL-----EKNVCTWNSIIGGLAIHGCGEEAVKM 318 (519)
Q Consensus 244 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~ 318 (519)
+++++|..++....+.. +++..+..++..+...++++++.++++.+. ..+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999887766543 566777888889999999999999998853 34667888899999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 048578 319 FWQMQMSGIKPD-DVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PME 396 (519)
Q Consensus 319 ~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~ 396 (519)
+++..+. .|+ ......++..+...|+.+++..++....+. .+.++..+..+..+|...|+.++|+.+|++. ...
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 9999885 565 667888999999999999999999998883 3567778889999999999999999999998 445
Q ss_pred C-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHh
Q 048578 397 P-NAVLWGSLLTACASADDGANVELAEIAMERLIK 430 (519)
Q Consensus 397 p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~ 430 (519)
| |......+..++.. .|+.++|.++.+++.+
T Consensus 245 p~d~~~~~~~a~~l~~---~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQ---AGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT--------------------
T ss_pred cccccccccccccccc---cccccccccccccccc
Confidence 6 66677888888999 9999999999888764
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=2.9e-11 Score=109.18 Aligned_cols=255 Identities=10% Similarity=0.076 Sum_probs=183.8
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHH--HHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCH
Q 048578 204 GHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVL--SACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYI 281 (519)
Q Consensus 204 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 281 (519)
-+.+.|+++.|++++.-+.+..-+.-...-+.+- .......++..|..+-+..+..+ .-++.....-.......|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 4677888888888887776653222222222222 22222346677777666665543 23333333333444567999
Q ss_pred HHHHHHHhhcCCCChhhHHHHH---HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcH
Q 048578 282 EEALRVFKIVLEKNVCTWNSII---GGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMR 358 (519)
Q Consensus 282 ~~a~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 358 (519)
++|.+.|.+....|...-.+|. -.+-..|+.++|++.|-++..- +..+......+...|....+...|++++....
T Consensus 507 dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 9999999999888776555544 3567889999999999887532 24467788889999999999999999998776
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCC
Q 048578 359 RDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFND 436 (519)
Q Consensus 359 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (519)
. -++.|+.....|...|-+.|+-..|.+..-+- ..-| +..+..-|...|.. ..=.++++.+|+++.-++|. .
T Consensus 586 s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyid---tqf~ekai~y~ekaaliqp~-~ 659 (840)
T KOG2003|consen 586 S--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID---TQFSEKAINYFEKAALIQPN-Q 659 (840)
T ss_pred c--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHh---hHHHHHHHHHHHHHHhcCcc-H
Confidence 5 67778899999999999999999999876554 3334 56666666666777 77789999999999989987 5
Q ss_pred chHHH-HHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 437 GNYVL-MSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 437 ~~~~~-l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
.-|.. ++.++.+.|++.+|..+++...++-
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 56654 4556678899999999999986643
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.52 E-value=3.5e-11 Score=116.27 Aligned_cols=280 Identities=9% Similarity=0.027 Sum_probs=201.2
Q ss_pred HHhcCChHHHHHHHhcCCC--Cch-hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCChHH
Q 048578 174 YCNFGDVKSAQLLFDQMTE--KNV-VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNE--LTLVSVLSACANLGASEL 248 (519)
Q Consensus 174 ~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~ 248 (519)
....|+++.|.+.+....+ |+. ..+-....++.+.|+++.|.+.+.+..+.. |+. ..-......+...|+++.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence 3467999999999988765 433 334455677888999999999999987653 443 233345777888999999
Q ss_pred HHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHH----HHHHHHHcCChHHHHHHHHH
Q 048578 249 GKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK---NVCTWNS----IIGGLAIHGCGEEAVKMFWQ 321 (519)
Q Consensus 249 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~----l~~~~~~~g~~~~a~~~~~~ 321 (519)
|...++.+.+.. |-++.+...+..++...|++++|.+.+..+.+. +...+.. ...+....+..++..+.+..
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999986 667788999999999999999999999988753 3332321 11111222333333334444
Q ss_pred HHHCC---CCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhH---HHHHHHHHHhcCChHHHHHHHHhC-C
Q 048578 322 MQMSG---IKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKH---YGCLVDLLCRARLLDEAYEVIRNM-P 394 (519)
Q Consensus 322 m~~~g---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~-~ 394 (519)
+.... .+.+...+..+...+...|+.++|.+++++..+. . |+... .....-.....++.+.+.+.++.. .
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~-pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--L-GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--C-CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 44321 1236778888999999999999999999999883 2 33221 112222233457788888888777 4
Q ss_pred CCCCH---HHHHHHHHHHccccCCCCHHHHHHHHH--HHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 395 MEPNA---VLWGSLLTACASADDGANVELAEIAME--RLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 395 ~~p~~---~~~~~ll~~~~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
..|+. ....++...+.+ .|++++|.+.|+ ...+..|+ +..+..++.++.+.|+.++|.+++++-.
T Consensus 328 ~~p~~~~~~ll~sLg~l~~~---~~~~~~A~~~le~a~a~~~~p~-~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 328 NVDDKPKCCINRALGQLLMK---HGEFIEAADAFKNVAACKEQLD-ANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred hCCCChhHHHHHHHHHHHHH---cccHHHHHHHHHHhHHhhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45644 455677788888 999999999999 46667776 4557799999999999999999998753
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=1.9e-12 Score=122.61 Aligned_cols=249 Identities=13% Similarity=0.049 Sum_probs=195.3
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC--CcchhHHHHHHHHHHhcCCHHHHHH
Q 048578 209 KNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCI--ILNDKLGAALTDMYAKCGYIEEALR 286 (519)
Q Consensus 209 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~ 286 (519)
-+..+|...|+....+ +.-+......+..+|...+++++++.+|+.+.+... ..+..+|.+.+--+-+.=.+.---+
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 4568899999996554 333446777888999999999999999999988641 2456677766544433211111111
Q ss_pred HHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCC
Q 048578 287 VFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKP-DDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEP 365 (519)
Q Consensus 287 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 365 (519)
-+-.+-...+.+|-++..+|.-+++.+.|++.|++.+. +.| ...+|+.+..-+.....+|.|...|+.... -.+.
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 11222334678999999999999999999999999987 456 566888888888999999999999999876 1122
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 048578 366 NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNA-VLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMS 443 (519)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (519)
+-..|.-+.-.|.+.++++.|.-.|+++ .+.|.. +....+...+.+ .|+.++|+++++++..++|.|+-....-+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~---~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ---LKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH---hhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 2334555778899999999999999999 888854 455566666788 89999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHhC
Q 048578 444 NIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
.++...+++++|+..++++++.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh
Confidence 9999999999999999999873
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.3e-09 Score=99.07 Aligned_cols=347 Identities=12% Similarity=0.066 Sum_probs=238.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHH--HHHHHHHHhc
Q 048578 100 NTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSL--TRLITFYCNF 177 (519)
Q Consensus 100 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~ 177 (519)
-.....+-+.|....|+..|...... .+-.=..|..|...+. + .+....+... .+.+.... --+..++-..
T Consensus 168 YL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit---~-~e~~~~l~~~--l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 168 YLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELIT---D-IEILSILVVG--LPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhc---h-HHHHHHHHhc--CcccchHHHHHHHHHHHHHH
Confidence 33334455667777888877776652 1111122332222221 1 1111222111 22221111 1234556666
Q ss_pred CChHHHHHHHhcCCC---Cc-hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCChHHHHH
Q 048578 178 GDVKSAQLLFDQMTE---KN-VVTWTAMINGHVKQKNYREGIDLFRKMRDSGV--EVNELTLVSVLSACANLGASELGKW 251 (519)
Q Consensus 178 g~~~~A~~~~~~~~~---~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~ 251 (519)
.+.+++..-.+.... |+ ...-+....+.-...++++|+.+|+++.++.+ --|..+|+.++-.-..... ..
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk----Ls 316 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK----LS 316 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH----HH
Confidence 677776665555543 22 22223334455677899999999999998731 1267788887755332211 11
Q ss_pred HHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 048578 252 VHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKN---VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIK 328 (519)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 328 (519)
++.+-...-.+--+.|...+.+-|.-.++.++|...|++..+-| ..+|+.+.+-|...++...|++-++..++-. +
T Consensus 317 ~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p 395 (559)
T KOG1155|consen 317 YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-P 395 (559)
T ss_pred HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-c
Confidence 22221111124456677788888999999999999999997754 4679999999999999999999999998853 5
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHH
Q 048578 329 PDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM--PMEPNAVLWGSLL 406 (519)
Q Consensus 329 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~p~~~~~~~ll 406 (519)
-|-..|..|.++|.-.+...-|+-+|++..+ --+-|...|.+|..+|.+.++.++|++.|+.. .-+.+...+..+.
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~La 473 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLA 473 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHH
Confidence 5667999999999999999999999999987 44567899999999999999999999999988 2244667899999
Q ss_pred HHHccccCCCCHHHHHHHHHHHHh-------hCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 407 TACASADDGANVELAEIAMERLIK-------LEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
..+-. .++.++|...+++.++ .+|....+...|+.-+.+.+++++|..+.....
T Consensus 474 kLye~---l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 474 KLYEE---LKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHH---HHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 99999 9999999999999887 334334555568888999999999998776543
No 47
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=3.8e-09 Score=96.37 Aligned_cols=408 Identities=12% Similarity=0.103 Sum_probs=304.0
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCC--CCc-chHHHHHHHHHhcCChhHHHHHHHHHH
Q 048578 47 KQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN--PST-FAFNTVIRGYAEAGLGHRGIQLYTQMI 123 (519)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~ 123 (519)
+.+++..+.-. ..+...|-..+.+=.++ ..+..|..+|++.+. |-+ ..|...+..=-..|++..|.++|+...
T Consensus 93 RSv~ERALdvd-~r~itLWlkYae~Emkn---k~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~ 168 (677)
T KOG1915|consen 93 RSVFERALDVD-YRNITLWLKYAEFEMKN---KQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWM 168 (677)
T ss_pred HHHHHHHHhcc-cccchHHHHHHHHHHhh---hhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 55666666554 44566676777777777 999999999998854 322 346666666667899999999999998
Q ss_pred hCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C----chhH
Q 048578 124 GNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE--K----NVVT 197 (519)
Q Consensus 124 ~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~~~~ 197 (519)
+ ..|+...|.+.++--.+.+..+.+.....+.--..|+...|-.....-.++|....|..+|+...+ . +...
T Consensus 169 ~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~l 246 (677)
T KOG1915|consen 169 E--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEIL 246 (677)
T ss_pred c--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 7 689999999999988777776666666655444689999999999999999999999999988765 2 2345
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCChHHHHHH--------HHHHHHcCCCcchhH
Q 048578 198 WTAMINGHVKQKNYREGIDLFRKMRDSGVEVN--ELTLVSVLSACANLGASELGKWV--------HEFVNKNCIILNDKL 267 (519)
Q Consensus 198 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~--------~~~~~~~~~~~~~~~ 267 (519)
+++....=.++..++.|.-+|+-..+. ++-+ ...|......--+-|+....+.. ++..++.+ +.|-.+
T Consensus 247 fvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDs 324 (677)
T KOG1915|consen 247 FVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDS 324 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchH
Confidence 566666666778899999999888876 2222 34555555555566665555433 33344443 567777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCh-----hhHHHHH--------HHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 048578 268 GAALTDMYAKCGYIEEALRVFKIVLEKNV-----CTWNSII--------GGLAIHGCGEEAVKMFWQMQMSGIKPDDVTL 334 (519)
Q Consensus 268 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~l~--------~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 334 (519)
+--.++.--..|+.+...++|++.+..-+ ..|...| -.-....+++.+.++++..++. ++....||
T Consensus 325 WfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtF 403 (677)
T KOG1915|consen 325 WFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTF 403 (677)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchH
Confidence 77888888888999999999999865311 1222222 1123568999999999998873 34444466
Q ss_pred HHH----HHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 048578 335 IAV----LTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTA 408 (519)
Q Consensus 335 ~~l----~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 408 (519)
.-+ ..--.++.++..|.+++.... |.-|-..+|...|..-.+.++++.+..++++. ...| |..+|......
T Consensus 404 aKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaEl 480 (677)
T KOG1915|consen 404 AKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAEL 480 (677)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHH
Confidence 544 333457789999999999886 55688899999999999999999999999998 6667 56788888777
Q ss_pred HccccCCCCHHHHHHHHHHHHhhCCC--CCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 048578 409 CASADDGANVELAEIAMERLIKLEPF--NDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVK 469 (519)
Q Consensus 409 ~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 469 (519)
-.. .|+.+.|..+|+-+++.... ....|...++.-...|.+++|..+++++.++.-..
T Consensus 481 E~~---LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~ 540 (677)
T KOG1915|consen 481 ETS---LGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV 540 (677)
T ss_pred HHH---hhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc
Confidence 777 99999999999998876532 23567778888889999999999999998876543
No 48
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.48 E-value=2.5e-09 Score=105.10 Aligned_cols=419 Identities=14% Similarity=0.136 Sum_probs=282.8
Q ss_pred HhccCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcC---CCCCcchHHHHHHHHHhcCChhH
Q 048578 38 QKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQI---INPSTFAFNTVIRGYAEAGLGHR 114 (519)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~ 114 (519)
-+.++...+..++.++++.. +.+...|..|...|-.. |+.+++...+-.+ .+.|...|..+.....+.|++++
T Consensus 150 farg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqr---Gd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQR---GDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHc---ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 34477777788888888775 66788899999999999 9999998877554 45677889999999999999999
Q ss_pred HHHHHHHHHhCCCCCCcc-hHHHHHHHHcCccchHHHHHHHHHhCCCCC--chhHH----HHHHHHHHhcCChHHHHHHH
Q 048578 115 GIQLYTQMIGNGLDPDSF-TYPILLKACGDLRQVKGVHSLVVKSKDFNS--VIHSL----TRLITFYCNFGDVKSAQLLF 187 (519)
Q Consensus 115 a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~l~~~~~~~g~~~~A~~~~ 187 (519)
|.-.|.+.++.. |+.. .+--=...|-+.|+...+.+-+.+.-...| +..-+ -..+..+...++-+.|.+.+
T Consensus 226 A~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 226 ARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999853 3332 222233445566664444443333221233 22222 33456677788888899888
Q ss_pred hcCCC-----CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC---------------------------CCHHHHHH
Q 048578 188 DQMTE-----KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVE---------------------------VNELTLVS 235 (519)
Q Consensus 188 ~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---------------------------~~~~~~~~ 235 (519)
+.... -+-..++.++..+.+..+++.+......+...... ++... .-
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~r 382 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IR 382 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-Hh
Confidence 87754 23456889999999999999999988888762211 22222 12
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCC--CcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC----ChhhHHHHHHHHHHc
Q 048578 236 VLSACANLGASELGKWVHEFVNKNCI--ILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK----NVCTWNSIIGGLAIH 309 (519)
Q Consensus 236 ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~ 309 (519)
+.-++...+..+....+.......+. .-+...|.-+..+|...|++.+|+.+|..+... +...|-.+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 22334556666667777777777763 445678889999999999999999999998653 567899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHcHH-------hcCCCCChhHHHHHHHHHHhcC
Q 048578 310 GCGEEAVKMFWQMQMSGIKPDD-VTLIAVLTACSHAGLIEKGKEIFYNMRR-------DYKVEPNVKHYGCLVDLLCRAR 381 (519)
Q Consensus 310 g~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~ 381 (519)
|..++|.+.|+..... .|+. ..-..|...+.+.|+.++|.+.+..+.. ..+..|+...-......+...|
T Consensus 463 ~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred hhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 9999999999999874 4554 4667777888999999999999988532 1245566666666777888888
Q ss_pred ChHHHHHHHHhC--------CCCC-----------------CHHHHHHHHHHHccccCCCCHHHHHHHHHHH-----H--
Q 048578 382 LLDEAYEVIRNM--------PMEP-----------------NAVLWGSLLTACASADDGANVELAEIAMERL-----I-- 429 (519)
Q Consensus 382 ~~~~A~~~~~~~--------~~~p-----------------~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~-----~-- 429 (519)
+.++=+.+...| -+-| ........+.+-.. .++.......+..- .
T Consensus 541 k~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k---~~~~~~~~~~l~d~~~~~~~e~ 617 (895)
T KOG2076|consen 541 KREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREK---ATDDNVMEKALSDGTEFRAVEL 617 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhc---cCchHHhhhcccchhhhhhhhh
Confidence 888755544333 0101 11122222222222 22211111111111 0
Q ss_pred -hhCCCCC-chHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 048578 430 -KLEPFND-GNYVLMSNIYAAKAQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 430 -~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (519)
.+.-++- ..+..++..+.+.+++++|+.+...+.+...-
T Consensus 618 ~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f 658 (895)
T KOG2076|consen 618 RGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIF 658 (895)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhh
Confidence 0111111 34557788889999999999999998876553
No 49
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.2e-09 Score=101.80 Aligned_cols=261 Identities=11% Similarity=0.006 Sum_probs=210.3
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHH
Q 048578 196 VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMY 275 (519)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (519)
........-+...+++.+..++.+...+.. ++....+..-|.++...|+...-..+-..+.+.- |..+.+|-++.--|
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHH
Confidence 334444556778899999999999988763 4555666666778888898888887777777764 77788899999999
Q ss_pred HhcCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 048578 276 AKCGYIEEALRVFKIVLEKN---VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKE 352 (519)
Q Consensus 276 ~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 352 (519)
.-.|+..+|.+.|.+...-| ...|-.+..+|+-.|..++|+..+...-+. ++-..-.+.-+.--|.+.++.+.|.+
T Consensus 323 l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHH
Confidence 99999999999999886544 468999999999999999999999887653 11122234444556888999999999
Q ss_pred HHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCC-CHHHHHHHHHHHccccCCCCHHHHHH
Q 048578 353 IFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM--------PMEP-NAVLWGSLLTACASADDGANVELAEI 423 (519)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--------~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~ 423 (519)
+|..... -.|-|+...+-+.-.....+.+.+|..+|+.. +-.+ -..+++.|..+|.+ .+.+++|+.
T Consensus 402 Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk---l~~~~eAI~ 476 (611)
T KOG1173|consen 402 FFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK---LNKYEEAID 476 (611)
T ss_pred HHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH---HhhHHHHHH
Confidence 9999876 44556777888888888889999999998876 1112 44578889999999 999999999
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 424 AMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 424 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
.+++++.+.|.++.++..++.+|...|+++.|.+.|.+..-
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988654
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=2.2e-10 Score=99.34 Aligned_cols=287 Identities=12% Similarity=0.056 Sum_probs=219.8
Q ss_pred hcCChHHHHHHHhcCCCCchhH---HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHhccCCh
Q 048578 176 NFGDVKSAQLLFDQMTEKNVVT---WTAMINGHVKQKNYREGIDLFRKMRDSGVEVNE------LTLVSVLSACANLGAS 246 (519)
Q Consensus 176 ~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~~~~~ll~~~~~~~~~ 246 (519)
-..+.++|.+.|-+|.+.|..+ .-+|.+.|.+.|..|+|+++-+.+.+. ||. .....+..-|...|-+
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 3588999999999998866554 457889999999999999999998875 332 2344566678899999
Q ss_pred HHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhh--------HHHHHHHHHHcCChHHHHHH
Q 048578 247 ELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCT--------WNSIIGGLAIHGCGEEAVKM 318 (519)
Q Consensus 247 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--------~~~l~~~~~~~g~~~~a~~~ 318 (519)
|.|+.+|..+.+.+ ..-......|+..|-...++++|+++-+++.+-+... |--+...+....+++.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999998865 3445567788999999999999999988876644433 44455556667899999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 048578 319 FWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP 397 (519)
Q Consensus 319 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p 397 (519)
+.+..+.+ +-....-..+.+.....|+++.|.+.++.+.+. +..--..+...|..+|...|+.++...++..+ ...+
T Consensus 203 l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 203 LKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 99988754 223335556778899999999999999999884 44344567788999999999999999999887 4455
Q ss_pred CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH---hcCCchHHHHHHHHHHhCCCccCCc
Q 048578 398 NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYA---AKAQWDDAGKMRRLMKERNIVKNPG 472 (519)
Q Consensus 398 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~~~~~~~~~ 472 (519)
....-..+...-.. ....+.|...+.+-++..|. ...+..++.... .-|.+.+-+.++++|....++..|.
T Consensus 281 g~~~~l~l~~lie~---~~G~~~Aq~~l~~Ql~r~Pt-~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 281 GADAELMLADLIEL---QEGIDAAQAYLTRQLRRKPT-MRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred CccHHHHHHHHHHH---hhChHHHHHHHHHHHhhCCc-HHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 55555555555444 56678888888888888887 667777777654 3356788888999998776665544
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.43 E-value=4.7e-11 Score=106.69 Aligned_cols=199 Identities=15% Similarity=0.029 Sum_probs=161.6
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048578 263 LNDKLGAALTDMYAKCGYIEEALRVFKIVLEK---NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLT 339 (519)
Q Consensus 263 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 339 (519)
.....+..+...+...|++++|.+.+++..+. +...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 34556777788888889999998888877542 45677778888899999999999999988754 345567788888
Q ss_pred HHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCC
Q 048578 340 ACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGAN 417 (519)
Q Consensus 340 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~ 417 (519)
.+...|++++|...++........+.....+..+...+...|++++|...+++. ...| +...+..+...+.. .|+
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~ 184 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL---RGQ 184 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH---cCC
Confidence 899999999999999998873222334556777888999999999999999888 4445 45577778888888 899
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048578 418 VELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
+++|...++++.+..|.++..+..++.++...|+.++|..+.+.+...
T Consensus 185 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 185 YKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999999988888888889999999999999999998887653
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=3.8e-10 Score=100.95 Aligned_cols=279 Identities=12% Similarity=0.104 Sum_probs=204.0
Q ss_pred cCChHHHHHHHhcCCC---CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 048578 177 FGDVKSAQLLFDQMTE---KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVH 253 (519)
Q Consensus 177 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 253 (519)
.|++..|++...+-.+ .....|..-+.+.-+.|+.+.+-.++.+.-+..-.++..............|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5888888888877554 2334566666777888899999988888876533455556666667788888888888888
Q ss_pred HHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh-----------hhHHHHHHHHHHcCChHHHHHHHHHH
Q 048578 254 EFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNV-----------CTWNSIIGGLAIHGCGEEAVKMFWQM 322 (519)
Q Consensus 254 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~~l~~~~~~~g~~~~a~~~~~~m 322 (519)
..+.+.+ +.++.+......+|.+.|++.....++.++.+.+. .+|..++.-....+..+.-...|++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 8888876 66778888888999999999999998888866422 36777777666666666666677666
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC
Q 048578 323 QMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM----PMEPN 398 (519)
Q Consensus 323 ~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~p~ 398 (519)
..+ .+-+...-..++.-+.+.|+.++|.++..+..++ +..|+... .-.+.+-++...-.+..++. +..|
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h~~~p- 328 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQHPEDP- 328 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHHH----HHhhcCCCCchHHHHHHHHHHHhCCCCh-
Confidence 433 3445556667777888889999999988888873 66666222 22334555555555544444 4333
Q ss_pred HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 048578 399 AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 399 ~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (519)
-.+..|...|.+ .+.+.+|...|+.+++..|. ...|..++.+|.+.|+.++|.++.++....-.+
T Consensus 329 -~L~~tLG~L~~k---~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 329 -LLLSTLGRLALK---NKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLLTRQ 393 (400)
T ss_pred -hHHHHHHHHHHH---hhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence 567777778888 88899999999988888886 788999999999999999999988887644333
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.39 E-value=3.7e-09 Score=94.75 Aligned_cols=251 Identities=15% Similarity=0.041 Sum_probs=174.0
Q ss_pred HHHHHhcCChHHHHHHHhcCCCC----chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh
Q 048578 171 ITFYCNFGDVKSAQLLFDQMTEK----NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGAS 246 (519)
Q Consensus 171 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 246 (519)
+.+.-..|+.+.+-+++.+..++ +....-+..+.....|+++.|..-+.++.+.+. -.+........+|.+.|++
T Consensus 125 A~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~ 203 (400)
T COG3071 125 AEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTP-RHPEVLRLALRAYIRLGAW 203 (400)
T ss_pred HHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCc-CChHHHHHHHHHHHHhccH
Confidence 34445556666666666665442 223344455556666666666666666665542 2344555666666666666
Q ss_pred HHHHHHHHHHHHcCCCcc-------hhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHH
Q 048578 247 ELGKWVHEFVNKNCIILN-------DKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAV 316 (519)
Q Consensus 247 ~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~ 316 (519)
.....+...+.+.+.-.+ ..+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.
T Consensus 204 ~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~ 283 (400)
T COG3071 204 QALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQ 283 (400)
T ss_pred HHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHH
Confidence 666666666666654333 22444555545444555555556666543 36777778888889999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 048578 317 KMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PM 395 (519)
Q Consensus 317 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~ 395 (519)
++..+..+.+..|+.. ..-.+.+.++.+.-++..++-.+.++..| ..+..|...|.+.+.|.+|.+.|+.. ..
T Consensus 284 ~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~ 357 (400)
T COG3071 284 EIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKL 357 (400)
T ss_pred HHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 9999998887777622 22346677888888888888777555444 67888999999999999999999987 88
Q ss_pred CCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhh
Q 048578 396 EPNAVLWGSLLTACASADDGANVELAEIAMERLIKL 431 (519)
Q Consensus 396 ~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 431 (519)
.|+..+|..+..++.. .|+.++|.+..++....
T Consensus 358 ~~s~~~~~~la~~~~~---~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 358 RPSASDYAELADALDQ---LGEPEEAEQVRREALLL 390 (400)
T ss_pred CCChhhHHHHHHHHHH---cCChHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999888754
No 54
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.38 E-value=8.6e-10 Score=107.85 Aligned_cols=427 Identities=11% Similarity=0.044 Sum_probs=250.4
Q ss_pred CCCCCCCCCcccHHHHHHhccCchHH--HHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCCCCcch
Q 048578 21 HKNSNTATKSHHHLPLLQKCTHLVQF--KQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFA 98 (519)
Q Consensus 21 ~~~~~~~p~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 98 (519)
+...|+.|+..||.+++..++..++. ..++..|.-..++-+...++.++...... ++.+.+. .|...+
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaatif~fm~~ksLpv~e~vf~~lv~sh~~A---nd~Enpk-------ep~aDt 85 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAATIFPFMEIKSLPVREGVFRGLVASHKEA---NDAENPK-------EPLADT 85 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCccccchhhhhcccccccchhHHHHHhccccc---ccccCCC-------CCchhH
Confidence 44578888888888888887766665 33778887777777788888888776666 6665554 688899
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH-H---Hh----CCCCCCcchHHHHHHHHcCccc----------hHHHHHHHHHhCCC
Q 048578 99 FNTVIRGYAEAGLGHRGIQLYTQ-M---IG----NGLDPDSFTYPILLKACGDLRQ----------VKGVHSLVVKSKDF 160 (519)
Q Consensus 99 ~~~ll~~~~~~g~~~~a~~~~~~-m---~~----~g~~p~~~~~~~ll~~~~~~~~----------~~~~~~~~~~~~~~ 160 (519)
|..++.+|.+.||... ++..++ | .. .|+.--..-+-..+.++...-. .+..+....+....
T Consensus 86 yt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~ 164 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAK 164 (1088)
T ss_pred HHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999754 222222 2 11 1221111111111122211111 23333333332212
Q ss_pred CCchhHHHH---HHHHHHh-cCChHHHHHHHhcCCC-CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 048578 161 NSVIHSLTR---LITFYCN-FGDVKSAQLLFDQMTE-KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVS 235 (519)
Q Consensus 161 ~~~~~~~~~---l~~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 235 (519)
.|....++. +++-+.. ...+++-..+.....+ +++.+|..++.+-...|+.+.|..++.+|++.|++.+.+-|..
T Consensus 165 ~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwp 244 (1088)
T KOG4318|consen 165 VPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWP 244 (1088)
T ss_pred CCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchh
Confidence 222111111 1222211 2234444444444444 8899999999999999999999999999999999988887777
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHH-----------HhhcCC-----------
Q 048578 236 VLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRV-----------FKIVLE----------- 293 (519)
Q Consensus 236 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-----------~~~~~~----------- 293 (519)
++-+ .++...++.++..|...|+.|+..|+...+-.+...|....+... +..+..
T Consensus 245 Ll~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~n 321 (1088)
T KOG4318|consen 245 LLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQN 321 (1088)
T ss_pred hhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHH
Confidence 7755 778888888889999999999888887666555553332211110 000000
Q ss_pred ------------------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCH-HHHH-----------------
Q 048578 294 ------------------KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMS--GIKPDD-VTLI----------------- 335 (519)
Q Consensus 294 ------------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--g~~p~~-~~~~----------------- 335 (519)
.....|...+. ....|.-++.+++...|..- ...++. ..|.
T Consensus 322 l~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~ 400 (1088)
T KOG4318|consen 322 LRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSR 400 (1088)
T ss_pred HHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHH
Confidence 00111221111 11133333333333222110 001100 0111
Q ss_pred ---------------------------------------------------------------HHHHHHhccCcHHHHHH
Q 048578 336 ---------------------------------------------------------------AVLTACSHAGLIEKGKE 352 (519)
Q Consensus 336 ---------------------------------------------------------------~l~~~~~~~g~~~~a~~ 352 (519)
.++..|++.-+..++..
T Consensus 401 i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~ 480 (1088)
T KOG4318|consen 401 IYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILC 480 (1088)
T ss_pred HHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222222222222222
Q ss_pred HHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-----CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHH
Q 048578 353 IFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-----PMEPNAVLWGSLLTACASADDGANVELAEIAMER 427 (519)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-----~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~ 427 (519)
.-++... . .-...|..||+.++.....+.|..+.++. .+..+..-+..+.+...+ .+....+..++++
T Consensus 481 ~~ekye~-~---lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r---~~~l~dl~tiL~e 553 (1088)
T KOG4318|consen 481 DEEKYED-L---LFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQR---LAILYDLSTILYE 553 (1088)
T ss_pred HHHHHHH-H---HhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHH---hHHHHHHHHHHhh
Confidence 2222211 0 11245778888888999999999998888 344566677888888888 8888999999998
Q ss_pred HHhhC---CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 048578 428 LIKLE---PFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVK 469 (519)
Q Consensus 428 ~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 469 (519)
+.+.- |.....+..+.......|+.+.-.++++-+...|+.-
T Consensus 554 ~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 554 DKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred hhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 88733 3334566677777888899998888888888888764
No 55
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=1.4e-09 Score=99.61 Aligned_cols=218 Identities=13% Similarity=0.051 Sum_probs=173.9
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHH
Q 048578 205 HVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEA 284 (519)
Q Consensus 205 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 284 (519)
+.-.|+.-.|..-|+..++....++. .|..+..+|....+.++....|+...+.+ +.++.+|..-..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 45668899999999999887543333 27777788999999999999999999987 67788888888888889999999
Q ss_pred HHHHhhcCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhc
Q 048578 285 LRVFKIVLEKN---VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDY 361 (519)
Q Consensus 285 ~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 361 (519)
..-|++.+.-+ ...|-.+.-+..+.+++++++..|++.++. ++--...|+.....+...++++.|.+.|+...+
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~-- 490 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE-- 490 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--
Confidence 99999997754 445555666667889999999999999875 444556999999999999999999999999876
Q ss_pred CCCCC---------hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHccccCCCCHHHHHHHHHHHHh
Q 048578 362 KVEPN---------VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN-AVLWGSLLTACASADDGANVELAEIAMERLIK 430 (519)
Q Consensus 362 ~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~ 430 (519)
+.|+ +..--.++..- -.+++..|.+++.+. .+.|. ...+..|...-.. .|+.++|+++|++...
T Consensus 491 -LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ---~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 491 -LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQ---RGKIDEAIELFEKSAQ 565 (606)
T ss_pred -hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHH
Confidence 2232 11222222222 348999999999998 77784 5688889888888 9999999999999887
Q ss_pred hC
Q 048578 431 LE 432 (519)
Q Consensus 431 ~~ 432 (519)
+.
T Consensus 566 lA 567 (606)
T KOG0547|consen 566 LA 567 (606)
T ss_pred HH
Confidence 64
No 56
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.33 E-value=1.3e-10 Score=113.46 Aligned_cols=261 Identities=15% Similarity=0.155 Sum_probs=189.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 048578 216 DLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKN 295 (519)
Q Consensus 216 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 295 (519)
.++-.+...|+.|+.+||..+|.-||..|+.+.|. +|..|.-...+.+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667888899999999999999999999999999 9999999999999999999999999999877665 678
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHH
Q 048578 296 VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVD 375 (519)
Q Consensus 296 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 375 (519)
..+|..|..+|..+||... .+..++ -...+...+...|....-..++..+.-..+.-||..+ .+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHH
Confidence 8999999999999999876 233332 2334455667777777777777665332345566544 566
Q ss_pred HHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHH
Q 048578 376 LLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDA 455 (519)
Q Consensus 376 ~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 455 (519)
.....|-++.+++++..++.-.....+..+++-+... ...+++-..+.+...+ +| ++.+|..+...-..+|+.+.|
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~--ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~A 223 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVD--NTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDGA 223 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccC--CchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhhH
Confidence 6777888999999998883222111222245555551 2334444444443333 34 588999999999999999999
Q ss_pred HHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCCChhHHHHHHHHHHHHHHhcccCCCC
Q 048578 456 GKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLREECYAARM 518 (519)
Q Consensus 456 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 518 (519)
..++..|+++|++.++..+|..+ .| .++.+. ++.+..-|...|..|+.
T Consensus 224 k~ll~emke~gfpir~HyFwpLl--------~g---~~~~q~----~e~vlrgmqe~gv~p~s 271 (1088)
T KOG4318|consen 224 KNLLYEMKEKGFPIRAHYFWPLL--------LG---INAAQV----FEFVLRGMQEKGVQPGS 271 (1088)
T ss_pred HHHHHHHHHcCCCcccccchhhh--------hc---CccchH----HHHHHHHHHHhcCCCCc
Confidence 99999999999999999988433 33 223333 33344445788888874
No 57
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=4.2e-08 Score=88.27 Aligned_cols=267 Identities=10% Similarity=-0.032 Sum_probs=184.6
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhH---HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 048578 160 FNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVT---WTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSV 236 (519)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 236 (519)
++.+......+..++...|+.++|...|++...-|+.+ .....-.+.+.|+.++...+...+.... .-+...|..-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 66677888888888888888888888888776544332 2222334567788887777777765431 1222333333
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChH
Q 048578 237 LSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGE 313 (519)
Q Consensus 237 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 313 (519)
+......++++.|..+-++..+.+ +.+...+-.-..++...|+.++|.-.|+.... -+...|.-|+.+|...|++.
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 334445667778887777777654 34445555556677788888888888877643 36778888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH-HHHh-ccCcHHHHHHHHHHcHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHH
Q 048578 314 EAVKMFWQMQMSGIKPDDVTLIAVL-TACS-HAGLIEKGKEIFYNMRRDYKVEPN-VKHYGCLVDLLCRARLLDEAYEVI 390 (519)
Q Consensus 314 ~a~~~~~~m~~~g~~p~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~ 390 (519)
+|.-.-+...+. +..+..+...+. ..|. ...--++|.+++++..+ +.|+ ....+.+...+...|..++++.++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 888776665543 244555555552 2222 23345678888877765 3444 455667778888888899999888
Q ss_pred HhC-CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC
Q 048578 391 RNM-PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN 435 (519)
Q Consensus 391 ~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (519)
++. ...||....+.|.+.+.. .+.+++|...|..+++++|.|
T Consensus 462 e~~L~~~~D~~LH~~Lgd~~~A---~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 462 EKHLIIFPDVNLHNHLGDIMRA---QNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHhhccccHHHHHHHHHHHH---hhhHHHHHHHHHHHHhcCccc
Confidence 887 667888888888888888 888899999999999988886
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=99.32 E-value=2e-09 Score=108.17 Aligned_cols=262 Identities=13% Similarity=-0.004 Sum_probs=187.1
Q ss_pred CchhHHHHHHHHHHH-----cCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHh---------ccCChHHHHHHHHHHH
Q 048578 193 KNVVTWTAMINGHVK-----QKNYREGIDLFRKMRDSGVEVN-ELTLVSVLSACA---------NLGASELGKWVHEFVN 257 (519)
Q Consensus 193 ~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~ 257 (519)
.+...|...+.+-.. .+.+++|..+|++..+. .|+ ...+..+..++. ..+++++|...++++.
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 345556666665322 23467999999999876 444 445555544433 2345789999999999
Q ss_pred HcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-H
Q 048578 258 KNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE--K-NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDV-T 333 (519)
Q Consensus 258 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~ 333 (519)
+.+ +.+...+..+..++...|++++|...|++..+ | +...+..+...+...|++++|...+++..+. .|+.. .
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhh
Confidence 886 66778888899999999999999999999865 3 4567888889999999999999999999885 45432 3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHcHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHH-HHHHHc
Q 048578 334 LIAVLTACSHAGLIEKGKEIFYNMRRDYKVEP-NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAVLWGS-LLTACA 410 (519)
Q Consensus 334 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~-ll~~~~ 410 (519)
+..++..+...|++++|...++++.+. .+| ++..+..+..++...|+.++|...++++ ...|+...... +...+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 344455567789999999999998762 234 4556777889999999999999999988 55666554444 444456
Q ss_pred cccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 411 SADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
. .| +.|...++++.+..-..+.....+..+|.-.|+-+.+... +++.+.+.
T Consensus 487 ~---~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 487 Q---NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred c---cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 6 45 4777777777664422222223377777778887777666 88876654
No 59
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.32 E-value=1.1e-08 Score=99.14 Aligned_cols=401 Identities=13% Similarity=0.065 Sum_probs=254.3
Q ss_pred HHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 048578 52 QIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN---PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLD 128 (519)
Q Consensus 52 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 128 (519)
++.-..+..++.+|..|.-+...+ |+++.+-+.|++... .....|+.+-..+...|.-..|+.+++.-....-.
T Consensus 313 k~r~~~~qnd~ai~d~Lt~al~~~---g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 313 KLRLKKFQNDAAIFDHLTFALSRC---GQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHhhhcchHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 333345667889999998889999 999999999998854 45567899999999999999999999887765433
Q ss_pred CCcc-hHHHHHHHHcCc-cchHHHHHHHHHhCC------CCCchhHHHHHHHHHHhc-----------CChHHHHHHHhc
Q 048578 129 PDSF-TYPILLKACGDL-RQVKGVHSLVVKSKD------FNSVIHSLTRLITFYCNF-----------GDVKSAQLLFDQ 189 (519)
Q Consensus 129 p~~~-~~~~ll~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~ 189 (519)
|+.. .+-..-+.|... +.+++..++..+.-+ -......|..+.-+|... ....++.+.+++
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 5444 344444445433 335555544433210 112233344444444322 123455666666
Q ss_pred CCC---CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchh
Q 048578 190 MTE---KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDK 266 (519)
Q Consensus 190 ~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 266 (519)
..+ .|+...--+.--|+..++++.|.+..++..+.+-..+...|..+.-.+...+++..|+.+.+.....- +.|-.
T Consensus 470 av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~ 548 (799)
T KOG4162|consen 470 AVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHV 548 (799)
T ss_pred HHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhh
Confidence 644 23322223344467778899999999988887667788888888888888889999988887765431 11111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcC-----------------------------C---CChhhHHHHHHHHH---HcCC
Q 048578 267 LGAALTDMYAKCGYIEEALRVFKIVL-----------------------------E---KNVCTWNSIIGGLA---IHGC 311 (519)
Q Consensus 267 ~~~~l~~~~~~~g~~~~a~~~~~~~~-----------------------------~---~~~~~~~~l~~~~~---~~g~ 311 (519)
....-+..-..-++.++++.....+. + ....++..+..-.. +.-.
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 11111111122334444333222110 0 01112222211111 0001
Q ss_pred hHHHHHHHHHHHHCCCC--CCH------HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCCh
Q 048578 312 GEEAVKMFWQMQMSGIK--PDD------VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLL 383 (519)
Q Consensus 312 ~~~a~~~~~~m~~~g~~--p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 383 (519)
++.. +...-+. |+. ..|......+.+.+..++|...+.+..+ ..+-....|......+...|++
T Consensus 629 se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 629 SELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQL 700 (799)
T ss_pred cccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhh
Confidence 1111 1111111 221 2344556667888889999988888876 3445566777788889999999
Q ss_pred HHHHHHHHhC-CCCCCH-HHHHHHHHHHccccCCCCHHHHHH--HHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 048578 384 DEAYEVIRNM-PMEPNA-VLWGSLLTACASADDGANVELAEI--AMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMR 459 (519)
Q Consensus 384 ~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (519)
++|.+.|... .+.|+. .+..++...+.. .|+..-|.. ++..+.+.+|.++.+|..++.++.+.|+.++|.+.|
T Consensus 701 ~EA~~af~~Al~ldP~hv~s~~Ala~~lle---~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 701 EEAKEAFLVALALDPDHVPSMTALAELLLE---LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHH---hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHH
Confidence 9999999888 778865 477778888888 666666666 999999999999999999999999999999999999
Q ss_pred HHHHhCCC
Q 048578 460 RLMKERNI 467 (519)
Q Consensus 460 ~~m~~~~~ 467 (519)
....+...
T Consensus 778 ~aa~qLe~ 785 (799)
T KOG4162|consen 778 QAALQLEE 785 (799)
T ss_pred HHHHhhcc
Confidence 98876544
No 60
>PF13041 PPR_2: PPR repeat family
Probab=99.31 E-value=4.4e-12 Score=81.71 Aligned_cols=50 Identities=36% Similarity=0.730 Sum_probs=48.5
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcC
Q 048578 94 PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGD 143 (519)
Q Consensus 94 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 143 (519)
||+.+||.+|.+|++.|++++|+++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=3.2e-10 Score=98.41 Aligned_cols=227 Identities=11% Similarity=0.013 Sum_probs=165.6
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHHcC
Q 048578 234 VSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE--K-NVCTWNSIIGGLAIHG 310 (519)
Q Consensus 234 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g 310 (519)
+.+.++|.+.|.+..|++.++..++. .|.+.+|..|-.+|.+..+...|+.++.+..+ | |+....-+...+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 34566667777777777777666664 35556666677777777777777777766654 2 3333344556666777
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 048578 311 CGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVI 390 (519)
Q Consensus 311 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 390 (519)
+.++|.++++...+.. ..+......+...|.-.++.+.|+.+++++.+ .|+ .++..|+.+.-+|.-.+++|-++.-|
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHH-hcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 7788888887776643 34445666666677777788888888888877 455 45667777777777888888887777
Q ss_pred HhC---CCCCC--HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048578 391 RNM---PMEPN--AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 391 ~~~---~~~p~--~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
++. .-.|+ ..+|..+-..... .||+..|.+.|+-++..+|++..+++.|+-.-.+.|++++|..++......
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~---iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVT---IGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEe---ccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 766 22233 3467777777777 999999999999999999999999999999999999999999999988765
Q ss_pred CCc
Q 048578 466 NIV 468 (519)
Q Consensus 466 ~~~ 468 (519)
...
T Consensus 459 ~P~ 461 (478)
T KOG1129|consen 459 MPD 461 (478)
T ss_pred Ccc
Confidence 544
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.30 E-value=1.1e-09 Score=104.91 Aligned_cols=230 Identities=17% Similarity=0.140 Sum_probs=167.2
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHc-------CCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------C--
Q 048578 231 LTLVSVLSACANLGASELGKWVHEFVNKN-------CIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE-------K-- 294 (519)
Q Consensus 231 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~-- 294 (519)
.+...+...|...|+++.|..+++...+. ..+.=....+.+...|...+++++|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555777777788888887777776654 1122223344577788888888888888887732 1
Q ss_pred --ChhhHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCC-CCHH-HHHHHHHHHhccCcHHHHHHHHHHcHHhcC--C
Q 048578 295 --NVCTWNSIIGGLAIHGCGEEAVKMFWQMQM-----SGIK-PDDV-TLIAVLTACSHAGLIEKGKEIFYNMRRDYK--V 363 (519)
Q Consensus 295 --~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~-p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~ 363 (519)
-..+++.|..+|.+.|++++|...+++..+ .|.. |... .++.+...|+..+++++|..++++..+.+. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 134677778888999999888887777532 1222 2222 567778889999999999999988766332 1
Q ss_pred CC----ChhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHccccCCCCHHHHHHHHHHHH
Q 048578 364 EP----NVKHYGCLVDLLCRARLLDEAYEVIRNM---------PMEPN-AVLWGSLLTACASADDGANVELAEIAMERLI 429 (519)
Q Consensus 364 ~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~ 429 (519)
.+ -..+++.|...|...|++++|.++++++ +..+. ...++.+...|.+ .+++++|.++|.+..
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~---~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEE---LKKYEEAEQLFEEAK 436 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHH---hcccchHHHHHHHHH
Confidence 22 2467899999999999999999999887 11222 4467778888888 888998988888876
Q ss_pred h----hCCC---CCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 430 K----LEPF---NDGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 430 ~----~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
. .+|+ ...+|..|+.+|.+.|++++|.++.+.+.
T Consensus 437 ~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 437 DIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4 3444 45678899999999999999999988875
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.29 E-value=1.6e-09 Score=96.65 Aligned_cols=193 Identities=10% Similarity=0.007 Sum_probs=108.2
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHH
Q 048578 195 VVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDM 274 (519)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 274 (519)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++.|...++...+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4567777778888888888888888776653 2245566666667777777777777777776654 3344455555666
Q ss_pred HHhcCCHHHHHHHHhhcCCC-----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 048578 275 YAKCGYIEEALRVFKIVLEK-----NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEK 349 (519)
Q Consensus 275 ~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 349 (519)
+...|++++|.+.+++.... ....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 66666666666666555331 12234444445555555555555555554432 1223344445555555555555
Q ss_pred HHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 048578 350 GKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRN 392 (519)
Q Consensus 350 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 392 (519)
|...+++..+. .+.+...+..++..+...|+.++|..+.+.
T Consensus 188 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 188 ARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 55555555442 222333444444444455555555444433
No 64
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=1.1e-11 Score=79.84 Aligned_cols=50 Identities=24% Similarity=0.546 Sum_probs=47.2
Q ss_pred CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 048578 193 KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACAN 242 (519)
Q Consensus 193 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 242 (519)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=4.2e-10 Score=97.71 Aligned_cols=228 Identities=13% Similarity=0.051 Sum_probs=194.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhc
Q 048578 199 TAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKC 278 (519)
Q Consensus 199 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 278 (519)
+.+.++|.+.|.+.+|.+.|+.-.+. .|-+.||..+-++|.+..+++.|..++.+-++.- |.+.....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 67889999999999999999998876 5677789889999999999999999999888763 66666677788899999
Q ss_pred CCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 048578 279 GYIEEALRVFKIVLEK---NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFY 355 (519)
Q Consensus 279 g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 355 (519)
++.++|.++|+...+. ++.+...+...|...++++-|+.+++++...|+ -+...|+.+.-+|.-.++++-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 9999999999988663 566777777888899999999999999999994 467789999999999999999999999
Q ss_pred HcHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhh
Q 048578 356 NMRRDYKVEPN--VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKL 431 (519)
Q Consensus 356 ~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 431 (519)
+.... --.|+ ...|..+.......|++.-|.+.|+-. .-.| +...++.|.-.-.+ .|+++.|..++..+.+.
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r---~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAAR---SGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhh---cCchHHHHHHHHHhhhh
Confidence 88772 33343 467888999999999999999999887 3344 56688888877888 99999999999999999
Q ss_pred CCC
Q 048578 432 EPF 434 (519)
Q Consensus 432 ~p~ 434 (519)
.|+
T Consensus 459 ~P~ 461 (478)
T KOG1129|consen 459 MPD 461 (478)
T ss_pred Ccc
Confidence 887
No 66
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.27 E-value=2.9e-07 Score=87.51 Aligned_cols=398 Identities=12% Similarity=0.087 Sum_probs=256.2
Q ss_pred cCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC------CCCC
Q 048578 57 SFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNG------LDPD 130 (519)
Q Consensus 57 ~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g------~~p~ 130 (519)
.+.....+|.-.++..... |-++-+..++++..+-++..-+-.|..+++.+++++|-+.+....... .+-+
T Consensus 133 pvtqH~rIW~lyl~Fv~~~---~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn 209 (835)
T KOG2047|consen 133 PVTQHDRIWDLYLKFVESH---GLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSN 209 (835)
T ss_pred chHhhccchHHHHHHHHhC---CChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccch
Confidence 3444455677777777777 888899999999888788778889999999999999999998887542 2334
Q ss_pred cchHHHHHHHHcCccc------hHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CchhHHHHHH
Q 048578 131 SFTYPILLKACGDLRQ------VKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE--KNVVTWTAMI 202 (519)
Q Consensus 131 ~~~~~~ll~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li 202 (519)
...|..+....++..+ ++.+.......- -+.-...+++|.+.|.+.|++++|..+|++..+ ..+.-|..+.
T Consensus 210 ~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf-tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~if 288 (835)
T KOG2047|consen 210 HQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF-TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIF 288 (835)
T ss_pred hhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC-cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHH
Confidence 4566666666555544 333333332221 111245789999999999999999999998765 2333344444
Q ss_pred HHHHHcC----------------------ChhHHHHHHHHHHhCCC-----------CCCHHHHHHHHHHHhccCChHHH
Q 048578 203 NGHVKQK----------------------NYREGIDLFRKMRDSGV-----------EVNELTLVSVLSACANLGASELG 249 (519)
Q Consensus 203 ~~~~~~~----------------------~~~~a~~~~~~m~~~~~-----------~~~~~~~~~ll~~~~~~~~~~~a 249 (519)
++|++-. +++-.+.-|+.+...+. +-+..+|..-. -...|+..+.
T Consensus 289 d~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~ 366 (835)
T KOG2047|consen 289 DAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQ 366 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHH
Confidence 4443321 12333344444444321 01112222211 1223455566
Q ss_pred HHHHHHHHHcCCC-----cchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh-------hhHHHHHHHHHHcCChHHHHH
Q 048578 250 KWVHEFVNKNCII-----LNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNV-------CTWNSIIGGLAIHGCGEEAVK 317 (519)
Q Consensus 250 ~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~ 317 (519)
...+.++.+.--| .....+..+...|-..|+++.|..+|++..+-+- .+|..-...=.++.+++.|++
T Consensus 367 i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~ 446 (835)
T KOG2047|consen 367 INTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALK 446 (835)
T ss_pred HHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 6666666553211 1234678889999999999999999999977543 345555555567889999999
Q ss_pred HHHHHHHCC-----------CCCC------HHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhc
Q 048578 318 MFWQMQMSG-----------IKPD------DVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRA 380 (519)
Q Consensus 318 ~~~~m~~~g-----------~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 380 (519)
++++....- .++. ...|...+..--..|-++....+++++..- .+ .++.........+...
T Consensus 447 lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL-ri-aTPqii~NyAmfLEeh 524 (835)
T KOG2047|consen 447 LMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL-RI-ATPQIIINYAMFLEEH 524 (835)
T ss_pred HHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-hc-CCHHHHHHHHHHHHhh
Confidence 988865321 1111 123444455555667888888899988873 33 2333333444555667
Q ss_pred CChHHHHHHHHhC-CC-C-CCHH-HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC--CchHHHHHHHHHhcCCchH
Q 048578 381 RLLDEAYEVIRNM-PM-E-PNAV-LWGSLLTACASADDGANVELAEIAMERLIKLEPFN--DGNYVLMSNIYAAKAQWDD 454 (519)
Q Consensus 381 ~~~~~A~~~~~~~-~~-~-p~~~-~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~ 454 (519)
.-++++.+++++- ++ + |+.. .|+..+.-+...-.....+.|..+|+++++.-|+. ...|...+..-.+.|.-..
T Consensus 525 ~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~ 604 (835)
T KOG2047|consen 525 KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARH 604 (835)
T ss_pred HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 7789999999987 22 2 4443 67777766555333668999999999999965642 2455556666667788889
Q ss_pred HHHHHHHH
Q 048578 455 AGKMRRLM 462 (519)
Q Consensus 455 A~~~~~~m 462 (519)
|++++++.
T Consensus 605 amsiyera 612 (835)
T KOG2047|consen 605 AMSIYERA 612 (835)
T ss_pred HHHHHHHH
Confidence 99999885
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=99.26 E-value=1.6e-09 Score=108.90 Aligned_cols=243 Identities=12% Similarity=0.053 Sum_probs=174.1
Q ss_pred CChHHHHHHHhcCCC--C-chhHHHHHHHHHHH---------cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 048578 178 GDVKSAQLLFDQMTE--K-NVVTWTAMINGHVK---------QKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGA 245 (519)
Q Consensus 178 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 245 (519)
+++++|...|++..+ | +...|..+..++.. .+++++|...+++..+.+ +-+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 446789999998876 3 34456666555442 345889999999998874 3356677778888889999
Q ss_pred hHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh---hhHHHHHHHHHHcCChHHHHHHHHHH
Q 048578 246 SELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNV---CTWNSIIGGLAIHGCGEEAVKMFWQM 322 (519)
Q Consensus 246 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m 322 (519)
+++|...++++.+.+ |.+...+..+..++...|++++|...+++..+.++ ..+..++..+...|++++|...+++.
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 999999999999986 56677888899999999999999999999865333 23344455577789999999999998
Q ss_pred HHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCC
Q 048578 323 QMSGIKPD-DVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM----PMEP 397 (519)
Q Consensus 323 ~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~p 397 (519)
.+.. .|+ ...+..+..++...|+.++|...+.++.. ..+.+....+.+...|...| ++|...++.+ ...|
T Consensus 433 l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 433 RSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 7653 354 44567778888899999999999998866 22233444556666777777 4676666555 3344
Q ss_pred CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCC
Q 048578 398 NAVLWGSLLTACASADDGANVELAEIAMERLIKLEP 433 (519)
Q Consensus 398 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p 433 (519)
....+..++ +.- .|+-+.+..+ +++.+.+.
T Consensus 508 ~~~~~~~~~--~~~---~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 508 NNPGLLPLV--LVA---HGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred cCchHHHHH--HHH---HhhhHHHHHH-HHhhccch
Confidence 444444443 333 5566666655 77766543
No 68
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=2.1e-07 Score=87.68 Aligned_cols=417 Identities=12% Similarity=0.056 Sum_probs=241.2
Q ss_pred CcccHHHHHHhccCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 048578 29 KSHHHLPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAE 108 (519)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~ 108 (519)
+.+.+-.-+-+....+.++..+..+...+.......+ .+=++|+.. +.+..++|+..++...+.+..+...-...+.+
T Consensus 45 d~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~-~fEKAYc~Y-rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYr 122 (652)
T KOG2376|consen 45 DEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSF-FFEKAYCEY-RLNKLDEALKTLKGLDRLDDKLLELRAQVLYR 122 (652)
T ss_pred cHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchh-hHHHHHHHH-HcccHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 3334444444445555556666555444421111111 134556543 33788999988885555555566666788899
Q ss_pred cCChhHHHHHHHHHHhCCCCCC-cchHHHHHHHHcCccchHHHHHHHHHhCCCCC-chhHHHHHHHHHHhcCChHHHHHH
Q 048578 109 AGLGHRGIQLYTQMIGNGLDPD-SFTYPILLKACGDLRQVKGVHSLVVKSKDFNS-VIHSLTRLITFYCNFGDVKSAQLL 186 (519)
Q Consensus 109 ~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 186 (519)
.|++++|+++|..+.+.+..-- ...-..++.+- ....+ ..+......+. +-..+....-.++..|++.+|+++
T Consensus 123 l~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l~~-~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~el 197 (652)
T KOG2376|consen 123 LERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AALQV-QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIEL 197 (652)
T ss_pred HhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----HhhhH-HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHH
Confidence 9999999999999988654321 11111222211 11111 12333331221 122233344567789999999999
Q ss_pred HhcCC--------CCch----------hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH----HHHHHHHHhccC
Q 048578 187 FDQMT--------EKNV----------VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELT----LVSVLSACANLG 244 (519)
Q Consensus 187 ~~~~~--------~~~~----------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----~~~ll~~~~~~~ 244 (519)
++... ..|. ..-..|.-++-..|+.++|..+|....+.. .+|... .|.++..-....
T Consensus 198 L~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~ 276 (652)
T KOG2376|consen 198 LEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQN 276 (652)
T ss_pred HHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccc
Confidence 98872 1111 123345567788999999999999998886 334422 222222211111
Q ss_pred ChH-HHHHHHHHHHH-----------cCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-hhhHHHHHHHH--HHc
Q 048578 245 ASE-LGKWVHEFVNK-----------NCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKN-VCTWNSIIGGL--AIH 309 (519)
Q Consensus 245 ~~~-~a~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~l~~~~--~~~ 309 (519)
-++ .+...++.... ..-......-+.++..| .+..+.+.++........ ...+.+++... ++.
T Consensus 277 ~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~ 354 (652)
T KOG2376|consen 277 YFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVRE 354 (652)
T ss_pred cCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHH
Confidence 112 11111111111 00001111112233333 355667777766665543 33444444333 223
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH--------HcHHhcCCCCChhHHHHHHHHHHhcC
Q 048578 310 GCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFY--------NMRRDYKVEPNVKHYGCLVDLLCRAR 381 (519)
Q Consensus 310 g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (519)
..+..+.+++...-+..-.-........++.....|+++.|.+++. .+.+ .+..|. +...+...+.+.+
T Consensus 355 ~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~~~P~--~V~aiv~l~~~~~ 431 (652)
T KOG2376|consen 355 KKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE-AKHLPG--TVGAIVALYYKIK 431 (652)
T ss_pred HHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hccChh--HHHHHHHHHHhcc
Confidence 3577788888777654222223466677778899999999999999 5544 344554 4456777888888
Q ss_pred ChHHHHHHHHhC-----CCCCCHH----HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCc
Q 048578 382 LLDEAYEVIRNM-----PMEPNAV----LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQW 452 (519)
Q Consensus 382 ~~~~A~~~~~~~-----~~~p~~~----~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 452 (519)
+.+.|..++.+. .-.+... ++.-+...-.+ +|+.++|..+++++.+.+|++..+...++.+|++. +.
T Consensus 432 ~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr---~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~ 507 (652)
T KOG2376|consen 432 DNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR---HGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DP 507 (652)
T ss_pred CCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh---cCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CH
Confidence 877777777665 1112222 33333334445 79999999999999999999999999999999988 67
Q ss_pred hHHHHHHHHH
Q 048578 453 DDAGKMRRLM 462 (519)
Q Consensus 453 ~~A~~~~~~m 462 (519)
+.|..+-+.+
T Consensus 508 eka~~l~k~L 517 (652)
T KOG2376|consen 508 EKAESLSKKL 517 (652)
T ss_pred HHHHHHhhcC
Confidence 8888875544
No 69
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2.5e-08 Score=93.25 Aligned_cols=281 Identities=13% Similarity=-0.016 Sum_probs=218.2
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC---chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 048578 160 FNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEK---NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSV 236 (519)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 236 (519)
...+........+-+...+++.+..++++.+.+. ....+-.-|.++...|+..+-..+=.+|.+. .+-...+|-.+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 3445566666777788899999999999998774 3445556677888999988888888888876 34467889999
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChH
Q 048578 237 LSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGE 313 (519)
Q Consensus 237 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 313 (519)
..-|...|..++|+++|.+....+ +.-...|-.....|+-.|..++|...|....+ .....+.-+.--|.+.++++
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 888888899999999999987765 33455778889999999999999999977643 22233444556688899999
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHcHHhc-CCCC----ChhHHHHHHHHHHhcCChHHHH
Q 048578 314 EAVKMFWQMQMSGIKPD-DVTLIAVLTACSHAGLIEKGKEIFYNMRRDY-KVEP----NVKHYGCLVDLLCRARLLDEAY 387 (519)
Q Consensus 314 ~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~----~~~~~~~l~~~~~~~~~~~~A~ 387 (519)
-|.++|.+... +-|+ ....+-+.-.....+.+.+|..+|+.....- .+.+ -..+++.|..+|.+.+.+++|+
T Consensus 398 LAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 398 LAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999998875 4555 4477777767777899999999999887411 0111 2346889999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 048578 388 EVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYA 447 (519)
Q Consensus 388 ~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (519)
..+++. ...| +..++.++.-.|.. .|+++.|...|.+++-+.|+|..+-..|..+..
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~l---lgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHL---LGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHH---hcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 999998 3344 77788888888888 999999999999999999998666666654443
No 70
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.21 E-value=1.4e-06 Score=82.99 Aligned_cols=284 Identities=16% Similarity=0.187 Sum_probs=181.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCc-------hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC----------C
Q 048578 166 SLTRLITFYCNFGDVKSAQLLFDQMTEKN-------VVTWTAMINGHVKQKNYREGIDLFRKMRDSGVE----------V 228 (519)
Q Consensus 166 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----------~ 228 (519)
.|..+...|-..|+++.|..+|++..+.+ ..+|......=.+..+++.|+++++....-.-. |
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 45567777788888888888888876622 234555556666777788888877665332111 1
Q ss_pred -------CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CCh-
Q 048578 229 -------NELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE----KNV- 296 (519)
Q Consensus 229 -------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~- 296 (519)
+...|...++.--..|-++....+++.+.+..+.... +.-.....+-...-++++.++|++-+. |++
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPq-ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQ-IIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 2234555555556667778888888888877643332 222233334455667888888887754 333
Q ss_pred hhHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhccCcHHHHHHHHHHcHHhcCCCCC--hhH
Q 048578 297 CTWNSIIGGLAI---HGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTA--CSHAGLIEKGKEIFYNMRRDYKVEPN--VKH 369 (519)
Q Consensus 297 ~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~ 369 (519)
..|+..+.-+.+ ....+.|..+|++..+ |++|...-+..|+-+ =-+-|-...|+.++++... ++++. ...
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~m 624 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDM 624 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHH
Confidence 356665555443 2467899999999987 778776533333322 2345888889999999876 55554 357
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhC-CC-CCchHHHHHHHH
Q 048578 370 YGCLVDLLCRARLLDEAYEVIRNM-PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLE-PF-NDGNYVLMSNIY 446 (519)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~-p~-~~~~~~~l~~~~ 446 (519)
|+..|.--...=-+....++|++. ..-|+...-...+...-.....|..+.|..++.-..+.- |. ++..|...-..-
T Consensus 625 yni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FE 704 (835)
T KOG2047|consen 625 YNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFE 704 (835)
T ss_pred HHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHH
Confidence 887776555544455556666666 445665544444433222222899999999999888875 44 677888888888
Q ss_pred HhcCCch
Q 048578 447 AAKAQWD 453 (519)
Q Consensus 447 ~~~g~~~ 453 (519)
.+.|+-+
T Consensus 705 vrHGned 711 (835)
T KOG2047|consen 705 VRHGNED 711 (835)
T ss_pred HhcCCHH
Confidence 8999833
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.17 E-value=2.5e-09 Score=98.42 Aligned_cols=115 Identities=13% Similarity=-0.054 Sum_probs=51.9
Q ss_pred CChhHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHH
Q 048578 209 KNYREGIDLFRKMRDSG-VEVN--ELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEAL 285 (519)
Q Consensus 209 ~~~~~a~~~~~~m~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 285 (519)
+..+.++.-+.++.... ..|+ ...|......+...|+.+.|...|+...+.. +.+...++.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 44455555555554331 1111 1234444444555555555555555555443 333444444444555555555555
Q ss_pred HHHhhcCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048578 286 RVFKIVLE--K-NVCTWNSIIGGLAIHGCGEEAVKMFWQMQM 324 (519)
Q Consensus 286 ~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 324 (519)
..|++..+ | +..+|..+...+...|++++|.+.|++..+
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 54444422 1 223344444444444444444444444443
No 72
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.16 E-value=9e-07 Score=84.49 Aligned_cols=404 Identities=12% Similarity=0.053 Sum_probs=246.1
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 048578 47 KQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN---PSTFAFNTVIRGYAEAGLGHRGIQLYTQMI 123 (519)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 123 (519)
..+.+.+++ +.+-...+....--.+... |+-++|......... .+.++|..+.-.+-...++++|++.|....
T Consensus 27 LK~~~~iL~-k~~eHgeslAmkGL~L~~l---g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl 102 (700)
T KOG1156|consen 27 LKLIKQILK-KFPEHGESLAMKGLTLNCL---GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNAL 102 (700)
T ss_pred HHHHHHHHH-hCCccchhHHhccchhhcc---cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 455555555 3333334433222223344 899999998887754 566789988888888999999999999998
Q ss_pred hCCCCCCc-chHHHHHHHHcCccchHH---HHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-----Cc
Q 048578 124 GNGLDPDS-FTYPILLKACGDLRQVKG---VHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE-----KN 194 (519)
Q Consensus 124 ~~g~~p~~-~~~~~ll~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~ 194 (519)
.. .||. ..|.-+--.-+..++.+. ....+.+. .+.....|..++.++.-.|+...|..+++...+ ++
T Consensus 103 ~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s 178 (700)
T KOG1156|consen 103 KI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPS 178 (700)
T ss_pred hc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 84 4544 345544444444444222 22222222 233455677777778888999988888877654 34
Q ss_pred hhHHHH------HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHcCCCcchhH
Q 048578 195 VVTWTA------MINGHVKQKNYREGIDLFRKMRDSGVEVNELTL-VSVLSACANLGASELGKWVHEFVNKNCIILNDKL 267 (519)
Q Consensus 195 ~~~~~~------li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 267 (519)
...+.- ........|.+++|++.+..-... ..|...+ ..-...+.+.+++++|..++..+...+ |.+...
T Consensus 179 ~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~Y 255 (700)
T KOG1156|consen 179 KEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDNLDY 255 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chhHHH
Confidence 333322 223456778888888877665433 2233222 233455778899999999999998875 444555
Q ss_pred HHHHHHHHHhcCCHHHHH-HHHhhcCCCCh--hhHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 048578 268 GAALTDMYAKCGYIEEAL-RVFKIVLEKNV--CTWNSI-IGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSH 343 (519)
Q Consensus 268 ~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~--~~~~~l-~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 343 (519)
|..+..++.+-.+.-++. .+|....+.-+ ..-..+ +.......-.+..-.++..+.+.|+++--..+.++ |-.
T Consensus 256 y~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~ 332 (700)
T KOG1156|consen 256 YEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSL---YKD 332 (700)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHH---Hhc
Confidence 555566664333333333 56655533211 000000 11111122223445566677778866533333333 322
Q ss_pred cCcHHHHHHH---HHHcHHhcC----------CCCChhHHH--HHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHH
Q 048578 344 AGLIEKGKEI---FYNMRRDYK----------VEPNVKHYG--CLVDLLCRARLLDEAYEVIRNM-PMEPNAV-LWGSLL 406 (519)
Q Consensus 344 ~g~~~~a~~~---~~~~~~~~~----------~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~-~~~~ll 406 (519)
....+-..++ +.......| -+|+...|. .++..+-+.|+++.|...++.. +..|+.. .|..-.
T Consensus 333 p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~Ka 412 (700)
T KOG1156|consen 333 PEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKA 412 (700)
T ss_pred hhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHH
Confidence 2111111111 111111011 145555554 5778889999999999999988 7788766 454445
Q ss_pred HHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 407 TACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
+.+.. .|++++|..+++++.+++-.|...-..-+.-..++++.++|.++..++-+.|.
T Consensus 413 RI~kH---~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 413 RIFKH---AGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHh---cCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 56777 89999999999999999966555555788889999999999999999977775
No 73
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.14 E-value=1.4e-07 Score=91.98 Aligned_cols=286 Identities=13% Similarity=0.027 Sum_probs=193.1
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC--Cchh-HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh----c
Q 048578 170 LITFYCNFGDVKSAQLLFDQMTE--KNVV-TWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACA----N 242 (519)
Q Consensus 170 l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~----~ 242 (519)
...++...|++++|+..++.-.. .|.. ........+.+.|+.++|..+|..+.+.+ |+...|-..+..+. .
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 34567888999999999987655 4544 45667788999999999999999999874 56666555555444 1
Q ss_pred --cCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHH-HHHHHHhhcCCCCh-hhHHHHHHHHHHcCChHHHHHH
Q 048578 243 --LGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIE-EALRVFKIVLEKNV-CTWNSIIGGLAIHGCGEEAVKM 318 (519)
Q Consensus 243 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~ 318 (519)
..+.+....+++.+...- |.......+.-.+.....+. .+...+..+..+++ .+|+.+-..|....+..-..++
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHH
Confidence 124566777888776643 22222222222222222332 23334444455554 4566666666655555555566
Q ss_pred HHHHHHC----C----------CCCCH--HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCC
Q 048578 319 FWQMQMS----G----------IKPDD--VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARL 382 (519)
Q Consensus 319 ~~~m~~~----g----------~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 382 (519)
+...... | -.|+. .++..+.+.|...|++++|++++++..+ .-+..+..|..-.+.|-+.|+
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCC
Confidence 6655432 1 12343 3567778889999999999999999988 233347788899999999999
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC-Cc--------hHHHHHHHHHhcCC
Q 048578 383 LDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN-DG--------NYVLMSNIYAAKAQ 451 (519)
Q Consensus 383 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~-~~--------~~~~l~~~~~~~g~ 451 (519)
+.+|.+.++.. .+.+ |...-+-....+.+ .|++++|.+.+....+.+-+. .. .....+.+|.+.|+
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR---a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCAKYLLR---AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHH---CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999998 5555 45555566667788 899999999998876655211 11 22467889999999
Q ss_pred chHHHHHHHHHHh
Q 048578 452 WDDAGKMRRLMKE 464 (519)
Q Consensus 452 ~~~A~~~~~~m~~ 464 (519)
+..|++.|..+.+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 9999997776654
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.13 E-value=3.2e-08 Score=82.26 Aligned_cols=199 Identities=15% Similarity=0.021 Sum_probs=103.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHh
Q 048578 198 WTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAK 277 (519)
Q Consensus 198 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 277 (519)
...|.-.|...|+...|.+-+++.++.. +-+..++..+...|.+.|+.+.|.+.|++..+.. +-
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~-------------- 101 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PN-------------- 101 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CC--------------
Confidence 3444445555555555555555555442 1123344444444444455555544444444432 22
Q ss_pred cCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHH
Q 048578 278 CGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPD-DVTLIAVLTACSHAGLIEKGKEIFYN 356 (519)
Q Consensus 278 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 356 (519)
+....|.....+|..|++++|...|++....-.-|. ..||..+.-+..+.|+.+.|...|++
T Consensus 102 -----------------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~r 164 (250)
T COG3063 102 -----------------NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKR 164 (250)
T ss_pred -----------------ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHH
Confidence 344455555555566666666666666554322222 23555555555666666666666666
Q ss_pred cHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 357 MRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM--PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
..+ ..+-...+...+.+.....|++..|..+++.. +..++..+....|..... .|+.+.+.++=.++.+.-|.
T Consensus 165 aL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~---~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 165 ALE--LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKR---LGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHH--hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHH---hccHHHHHHHHHHHHHhCCC
Confidence 555 22223344455556666666666666666555 223555555555555555 66666666555555555555
No 75
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=4.5e-07 Score=81.79 Aligned_cols=265 Identities=10% Similarity=0.004 Sum_probs=179.3
Q ss_pred CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHH
Q 048578 193 KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNEL-TLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAAL 271 (519)
Q Consensus 193 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 271 (519)
.|+.....+.+++...|+.++|+..|++.... .|+.. ......-.+.+.|+.+....+...+.... ..+...|-.-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 46667778888888888888888888887654 33322 22222223456777777777766666543 1222233333
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChh---hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 048578 272 TDMYAKCGYIEEALRVFKIVLEKNVC---TWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIE 348 (519)
Q Consensus 272 ~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 348 (519)
.......++++.|+.+-++.+..+.. .+-.-...+...|++++|.-.|+..+... +-+...|..|+.+|...|.+.
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHH
Confidence 44455667888888888877665443 33333466778888888888888877632 345568888888888888888
Q ss_pred HHHHHHHHcHHhcCCCCChhHHHHHH-HHHH-hcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHccccCCCCHHHHHHH
Q 048578 349 KGKEIFYNMRRDYKVEPNVKHYGCLV-DLLC-RARLLDEAYEVIRNM-PMEPNAV-LWGSLLTACASADDGANVELAEIA 424 (519)
Q Consensus 349 ~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~~~~a~~~ 424 (519)
+|.-.-....+ -++.+..+...+. ..+. ...--++|..++++. .++|+-. ..+.+...|.. .|..+.++.+
T Consensus 386 EA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~---Eg~~~D~i~L 460 (564)
T KOG1174|consen 386 EANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQV---EGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHh---hCccchHHHH
Confidence 88877777666 3444555655442 2222 233456788888877 7777643 55666666777 7788888888
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 425 MERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 425 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
+++.+...|+ ......|++.+...+.+.+|++.|......+.
T Consensus 461 Le~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 461 LEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 8888888876 67888888888888888899888887765443
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.13 E-value=4.1e-08 Score=95.53 Aligned_cols=259 Identities=12% Similarity=0.032 Sum_probs=186.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhc--
Q 048578 202 INGHVKQKNYREGIDLFRKMRDSGVEVNE-LTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKC-- 278 (519)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 278 (519)
...+...|++++|++.++.-... .+|. ..+......+.+.|+.++|..++..+.+.+ |.|...|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcc
Confidence 35568899999999999875543 4454 455566777899999999999999999998 56666777777776333
Q ss_pred ---CCHHHHHHHHhhcCCCCh--hhHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 048578 279 ---GYIEEALRVFKIVLEKNV--CTWNSIIGGLAIHGCG-EEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKE 352 (519)
Q Consensus 279 ---g~~~~a~~~~~~~~~~~~--~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 352 (519)
...+...++|+++.+..+ .+...+.-.+.....+ ..+..++..+...|+++ +|..|-..|......+-...
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 256777888887754322 2222222112221223 24556677778888654 55666656666666555666
Q ss_pred HHHHcHHhc-------------CCCCChh--HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHccccCC
Q 048578 353 IFYNMRRDY-------------KVEPNVK--HYGCLVDLLCRARLLDEAYEVIRNM-PMEPNA-VLWGSLLTACASADDG 415 (519)
Q Consensus 353 ~~~~~~~~~-------------~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~ 415 (519)
++....... .-+|+.. ++..+...|-..|++++|++++++. ...|+. ..|..-...+.+ .
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh---~ 241 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH---A 241 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH---C
Confidence 666554311 1134443 3456688899999999999999987 778875 467777777888 9
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 048578 416 ANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVK 469 (519)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 469 (519)
|++++|.+.++.+.++++.|..+-+-.+..+.++|+.++|.+++..+-+.+..|
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred CCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 999999999999999999988888889999999999999999999997776543
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.12 E-value=2.4e-08 Score=95.97 Aligned_cols=228 Identities=16% Similarity=0.091 Sum_probs=152.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhC-----C-CCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHc-----C--CCcch
Q 048578 200 AMINGHVKQKNYREGIDLFRKMRDS-----G-VEVNELT-LVSVLSACANLGASELGKWVHEFVNKN-----C--IILND 265 (519)
Q Consensus 200 ~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~ 265 (519)
.+...|...|+++.|+.+++...+. | ..|...+ .+.+...|...+.+++|..+|+.+... | .+.-.
T Consensus 204 ~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va 283 (508)
T KOG1840|consen 204 NLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVA 283 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 3555666666666666666554432 1 1222222 222445566667777777777666542 1 12234
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC----------CCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCH
Q 048578 266 KLGAALTDMYAKCGYIEEALRVFKIVLE----------KNV-CTWNSIIGGLAIHGCGEEAVKMFWQMQMS---GIKPDD 331 (519)
Q Consensus 266 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---g~~p~~ 331 (519)
.+++.|..+|.+.|++++|...+++..+ +.+ ..++.+...+...+++++|..+++...+. -..++.
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 4566666777777877777777665522 122 23566777888889999999988876431 122332
Q ss_pred ----HHHHHHHHHHhccCcHHHHHHHHHHcHHhc-----CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC--------
Q 048578 332 ----VTLIAVLTACSHAGLIEKGKEIFYNMRRDY-----KVEP-NVKHYGCLVDLLCRARLLDEAYEVIRNM-------- 393 (519)
Q Consensus 332 ----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------- 393 (519)
.+++.|...|...|++++|.++++++.... +..+ ....++.|...|.+.+++.+|.++|.+.
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g 443 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG 443 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence 489999999999999999999999887632 1112 2456778899999999999898888776
Q ss_pred CCCCCH-HHHHHHHHHHccccCCCCHHHHHHHHHHHHh
Q 048578 394 PMEPNA-VLWGSLLTACASADDGANVELAEIAMERLIK 430 (519)
Q Consensus 394 ~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~ 430 (519)
+..|+. .+|..|...|.. .|+++.|.++.+.+..
T Consensus 444 ~~~~~~~~~~~nL~~~Y~~---~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 444 PDHPDVTYTYLNLAALYRA---QGNYEAAEELEEKVLN 478 (508)
T ss_pred CCCCchHHHHHHHHHHHHH---cccHHHHHHHHHHHHH
Confidence 233444 589999999999 9999999999998874
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.11 E-value=1.4e-08 Score=84.42 Aligned_cols=162 Identities=13% Similarity=0.087 Sum_probs=117.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHH
Q 048578 299 WNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDD-VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLL 377 (519)
Q Consensus 299 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (519)
...+.-+|...|+...|..-+++.++. .|+. .++..+...|.+.|..+.|.+.|++..+ --+.+....|...-.+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHH
Confidence 445666777778888888877777764 3443 4777777778888888888888887776 2334556777777778
Q ss_pred HhcCChHHHHHHHHhCCCCC----CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCch
Q 048578 378 CRARLLDEAYEVIRNMPMEP----NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWD 453 (519)
Q Consensus 378 ~~~~~~~~A~~~~~~~~~~p----~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 453 (519)
|..|++++|...|++.-..| -..+|..+.-+..+ .|+.+.|...|++.++.+|+.+.....++....+.|++-
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~---~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALK---AGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh---cCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccch
Confidence 88888888888887761122 23356666655666 778888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhCCC
Q 048578 454 DAGKMRRLMKERNI 467 (519)
Q Consensus 454 ~A~~~~~~m~~~~~ 467 (519)
.|...+++....+.
T Consensus 191 ~Ar~~~~~~~~~~~ 204 (250)
T COG3063 191 PARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHHhccc
Confidence 88888888777665
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.11 E-value=7.2e-08 Score=88.76 Aligned_cols=143 Identities=6% Similarity=-0.235 Sum_probs=76.0
Q ss_pred CChHHHHHHHhcCCC-----C--chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHH
Q 048578 178 GDVKSAQLLFDQMTE-----K--NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGK 250 (519)
Q Consensus 178 g~~~~A~~~~~~~~~-----~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 250 (519)
+..+.++.-+.++.. | ....|..+...|...|++++|...|++..+.. +.+...|..+...+...|+++.|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 444555555544432 1 12345555566666666666666666666543 224556666666666666666666
Q ss_pred HHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhh-HH-HHHHHHHHcCChHHHHHHHHHH
Q 048578 251 WVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCT-WN-SIIGGLAIHGCGEEAVKMFWQM 322 (519)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~-~l~~~~~~~g~~~~a~~~~~~m 322 (519)
..++...+.. +.+...+..+..++...|++++|.+.|+...+.++.. +. .........+++++|...+.+.
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 6666666543 3344555556666666666666666666654422211 11 1111122344556666655443
No 80
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=2.8e-06 Score=75.29 Aligned_cols=380 Identities=12% Similarity=0.040 Sum_probs=222.8
Q ss_pred HHHhhcCCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccch
Q 048578 71 LIESLVNSSQIAYAHLVFNQIIN---PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQV 147 (519)
Q Consensus 71 ~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 147 (519)
-+.+. |++++|...++.+.+ ++...+-.+.-++.-.|.+.+|..+-.+..+ ++..-..++..-.+.++-
T Consensus 66 C~fhL---gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 66 CYFHL---GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHhh---ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcH
Confidence 34555 888888888877633 4555566666666667777777776554432 333344455555566665
Q ss_pred HHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CchhHHHH-HHHHHHHcCChhHHHHHHHHHHhC
Q 048578 148 KGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE--KNVVTWTA-MINGHVKQKNYREGIDLFRKMRDS 224 (519)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~ 224 (519)
+++...-...+ .+..-..+|.+...-.-.+++|..++.++.. |+-...|. +.-+|.+..-++-+.+++.-..+.
T Consensus 138 k~~~~fh~~Lq---D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 138 KRILTFHSSLQ---DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHHHHHHh---hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 55444433322 2234445566666666788999999999876 44444444 445677888888888888777665
Q ss_pred CCCCCHHHHHHHHHHHhcc--CChHHHH------------HHHHHHHHcCC------------Cc-----chhHHHHHHH
Q 048578 225 GVEVNELTLVSVLSACANL--GASELGK------------WVHEFVNKNCI------------IL-----NDKLGAALTD 273 (519)
Q Consensus 225 ~~~~~~~~~~~ll~~~~~~--~~~~~a~------------~~~~~~~~~~~------------~~-----~~~~~~~l~~ 273 (519)
++.++...+..+....+. |+..+.+ ...+.+.+.++ -| -+...-.|+-
T Consensus 215 -~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~i 293 (557)
T KOG3785|consen 215 -FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLII 293 (557)
T ss_pred -CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhhee
Confidence 233333344333322222 2211111 01111222110 00 1222334566
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcC-------ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccC
Q 048578 274 MYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHG-------CGEEAVKMFWQMQMSGIKPDDV-TLIAVLTACSHAG 345 (519)
Q Consensus 274 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g 345 (519)
-|.+.+++++|..+.+.+..-.+.-|-.-.-.++..| ...-|.+.|+-.-+++..-|.. ---++..++.-..
T Consensus 294 YyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~ 373 (557)
T KOG3785|consen 294 YYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSF 373 (557)
T ss_pred eecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHH
Confidence 6888999999999988875544443332222233333 3344555555444444333322 2334444555556
Q ss_pred cHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHH-HHccccCCCCHHHHH
Q 048578 346 LIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PME-PNAVLWGSLLT-ACASADDGANVELAE 422 (519)
Q Consensus 346 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~-p~~~~~~~ll~-~~~~~~~~~~~~~a~ 422 (519)
+++..+-++..+.. +=...|...+ .+..+++..|.+.+|.++|-.+ +-+ .|..+|.+++. .|.+ .+..+.|.
T Consensus 374 qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~---nkkP~lAW 448 (557)
T KOG3785|consen 374 QFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIR---NKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHh---cCCchHHH
Confidence 78888888888876 3444444444 4788999999999999999888 322 35666666554 4666 77888887
Q ss_pred HHHHHHHhhC-CCCC-chHHHHHHHHHhcCCchHHHHHHHHHHhCCCccC
Q 048578 423 IAMERLIKLE-PFND-GNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKN 470 (519)
Q Consensus 423 ~~~~~~~~~~-p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 470 (519)
.++ ++.+ |.+. .....++.-+.+++.+--|-+.|..+...+..|+
T Consensus 449 ~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 449 DMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE 495 (557)
T ss_pred HHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc
Confidence 665 3444 3332 3444567778899998888899988888777664
No 81
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=3.9e-06 Score=79.40 Aligned_cols=383 Identities=9% Similarity=0.002 Sum_probs=215.4
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHc
Q 048578 66 TQLAKLIESLVNSSQIAYAHLVFNQIIN---PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACG 142 (519)
Q Consensus 66 ~~ll~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 142 (519)
..++.-..+..++|++++|.+....+.. .+...+..=+-++.+.++|++|+.+.+.-... ..+..-+ +=++|+
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~--fEKAYc 88 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFF--FEKAYC 88 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhh--HHHHHH
Confidence 3455555555556899999988887743 45566777788888999999998665543321 1111111 234444
Q ss_pred --CccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHH-cCChhHHHHHHH
Q 048578 143 --DLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVK-QKNYREGIDLFR 219 (519)
Q Consensus 143 --~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~ 219 (519)
+.+..++++..+.-.. +.+..+...-...+.+.|++++|..+|+.+.+.+...+...+.+-+- .+-...+ +
T Consensus 89 ~Yrlnk~Dealk~~~~~~--~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~-~--- 162 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLKGLD--RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQV-Q--- 162 (652)
T ss_pred HHHcccHHHHHHHHhccc--ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhH-H---
Confidence 4444667666666222 22334556666778888888888888888876555555444433221 1111111 1
Q ss_pred HHHhCCCCCCHHHHHHHH---HHHhccCChHHHHHHHHHHHHcCC-------Cc------ch-hHHHHHHHHHHhcCCHH
Q 048578 220 KMRDSGVEVNELTLVSVL---SACANLGASELGKWVHEFVNKNCI-------IL------ND-KLGAALTDMYAKCGYIE 282 (519)
Q Consensus 220 ~m~~~~~~~~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~-------~~------~~-~~~~~l~~~~~~~g~~~ 282 (519)
.+......| ..+|..+. ..+...|++.+|+++++...+.+. .. .. ..-..+..++-..|+-+
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 122222233 33444443 345678999999999999843220 00 01 12234566777889999
Q ss_pred HHHHHHhhcCCC---Ch----hhHHHHHHHHH---------------------------------------------HcC
Q 048578 283 EALRVFKIVLEK---NV----CTWNSIIGGLA---------------------------------------------IHG 310 (519)
Q Consensus 283 ~a~~~~~~~~~~---~~----~~~~~l~~~~~---------------------------------------------~~g 310 (519)
+|.++|..+++. |. ..-|.++..-. ..+
T Consensus 242 ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn 321 (652)
T KOG2376|consen 242 EASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTN 321 (652)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999887543 11 01111111000 001
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cCcHHHHHHHHHHcHHhcCCCCC-hhHHHHHHHHHHhcCChHHHH
Q 048578 311 CGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSH--AGLIEKGKEIFYNMRRDYKVEPN-VKHYGCLVDLLCRARLLDEAY 387 (519)
Q Consensus 311 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~ 387 (519)
.-+.+.++.... -+..|. ..+..++..+.+ .....++..++....+ +.+.. ...--.++......|+++.|.
T Consensus 322 k~~q~r~~~a~l--p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~ 396 (652)
T KOG2376|consen 322 KMDQVRELSASL--PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVAL 396 (652)
T ss_pred hHHHHHHHHHhC--CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 111111111110 011222 234444443322 2246677777777766 33333 345556778888999999999
Q ss_pred HHHH--------hC-CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhC----CC---CCchHHHHHHHHHhcCC
Q 048578 388 EVIR--------NM-PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLE----PF---NDGNYVLMSNIYAAKAQ 451 (519)
Q Consensus 388 ~~~~--------~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~----p~---~~~~~~~l~~~~~~~g~ 451 (519)
+++. .+ .+.-.+.+...+...+.+ .++-+.|..++..++..- +. -...+..++..-.+.|+
T Consensus 397 ~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~---~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~ 473 (652)
T KOG2376|consen 397 EILSLFLESWKSSILEAKHLPGTVGAIVALYYK---IKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN 473 (652)
T ss_pred HHHHHHhhhhhhhhhhhccChhHHHHHHHHHHh---ccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence 9988 44 233334445555556666 556666777777776421 22 23344555666678899
Q ss_pred chHHHHHHHHHHhCCC
Q 048578 452 WDDAGKMRRLMKERNI 467 (519)
Q Consensus 452 ~~~A~~~~~~m~~~~~ 467 (519)
-++|..+++++.+.+.
T Consensus 474 ~~ea~s~leel~k~n~ 489 (652)
T KOG2376|consen 474 EEEASSLLEELVKFNP 489 (652)
T ss_pred hHHHHHHHHHHHHhCC
Confidence 9999999999987443
No 82
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2.1e-07 Score=86.84 Aligned_cols=368 Identities=14% Similarity=0.067 Sum_probs=190.9
Q ss_pred CCCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCc-chHHHHHHHHcCccchHHHHH
Q 048578 77 NSSQIAYAHLVFNQII---NPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDS-FTYPILLKACGDLRQVKGVHS 152 (519)
Q Consensus 77 ~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~~~~ 152 (519)
.+|+++.|+..|.+.+ ++|...|+.-..+|+..|++++|++=-.+-++ +.|+- ..|.-.-.++.-.|+.+++..
T Consensus 14 s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 3489999999998874 35677788888899999999988887777666 45654 367777777777777777766
Q ss_pred HHHHhCCCCC-chhHHHHHHHHHHhcCChHHHHHHH------hcCCC-C------chhHHHHHHHHHHHc-------CCh
Q 048578 153 LVVKSKDFNS-VIHSLTRLITFYCNFGDVKSAQLLF------DQMTE-K------NVVTWTAMINGHVKQ-------KNY 211 (519)
Q Consensus 153 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~------~~~~~-~------~~~~~~~li~~~~~~-------~~~ 211 (519)
.+.+--...| +...++.+..++.... .+.+.| ..+.. | ....|..++..+-+. .+.
T Consensus 92 ay~~GL~~d~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 92 AYSEGLEKDPSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHHHHhhcCCchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 6655433444 4556666666661110 011111 11100 0 011233332221111 001
Q ss_pred hHHHHHHHHHH--------hCC-------CCC------------C----------HHHHHHHHHHHhccCChHHHHHHHH
Q 048578 212 REGIDLFRKMR--------DSG-------VEV------------N----------ELTLVSVLSACANLGASELGKWVHE 254 (519)
Q Consensus 212 ~~a~~~~~~m~--------~~~-------~~~------------~----------~~~~~~ll~~~~~~~~~~~a~~~~~ 254 (519)
+...+..-.+. ..| ..| | ..-...+.++..+..+++.+.+-+.
T Consensus 169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~ 248 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA 248 (539)
T ss_pred HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 11111111110 000 011 0 0123345555666667777777777
Q ss_pred HHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh----------hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048578 255 FVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVC----------TWNSIIGGLAIHGCGEEAVKMFWQMQM 324 (519)
Q Consensus 255 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----------~~~~l~~~~~~~g~~~~a~~~~~~m~~ 324 (519)
...... .+...++....+|...|.+.++...-+...+.+.. .+..+..++.+.++++.++..|++...
T Consensus 249 ~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLt 326 (539)
T KOG0548|consen 249 KALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALT 326 (539)
T ss_pred HHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhh
Confidence 666654 45555666677777777777766665555443221 122233355556677777777777655
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHH
Q 048578 325 SGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNV-KHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVL 401 (519)
Q Consensus 325 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~ 401 (519)
....|+..+ +....+++....+...- +.|.. .-...-...+.+.|++..|+..|.++ ...| |...
T Consensus 327 e~Rt~~~ls---------~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~l 394 (539)
T KOG0548|consen 327 EHRTPDLLS---------KLKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARL 394 (539)
T ss_pred hhcCHHHHH---------HHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHH
Confidence 444443221 11112222222211111 11211 01111234455566666666666665 3344 3345
Q ss_pred HHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 402 WGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 402 ~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
|..-.-+|.+ .+++..|..-.+..++++|+....|..=+.++....+|++|++.|++-.+.+
T Consensus 395 YsNRAac~~k---L~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 395 YSNRAACYLK---LGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHH---HhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5555555566 6666666666666666666666666666666666666666666666555444
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.00 E-value=1.8e-06 Score=82.47 Aligned_cols=297 Identities=11% Similarity=-0.073 Sum_probs=182.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC---Cchh---HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048578 164 IHSLTRLITFYCNFGDVKSAQLLFDQMTE---KNVV---TWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVL 237 (519)
Q Consensus 164 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 237 (519)
...+..+...+...|+.+.+...+....+ ++.. ........+...|++++|.+++++..+.. +.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 34555566666677777776665555432 2211 22233445678899999999999988763 223333332 2
Q ss_pred HHHh----ccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcC
Q 048578 238 SACA----NLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHG 310 (519)
Q Consensus 238 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g 310 (519)
..+. ..+..+.+...+.. .....+........+...+...|++++|...+++..+ .+...+..+...+...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 1222 23444555554443 1112233344555667788999999999999998855 34567788888999999
Q ss_pred ChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHH-H--HHHHHHHhcCChH
Q 048578 311 CGEEAVKMFWQMQMSGI-KPDD--VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHY-G--CLVDLLCRARLLD 384 (519)
Q Consensus 311 ~~~~a~~~~~~m~~~g~-~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~~~~~ 384 (519)
++++|...+++...... .|+. ..|..+...+...|++++|..++++........+..... + .++.-+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 99999999998876431 2332 245578888999999999999999986421111222111 1 2233333444333
Q ss_pred HHHHH---HHhC-CCCC---CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhC-C--------CCCchHHHHHHHHHh
Q 048578 385 EAYEV---IRNM-PMEP---NAVLWGSLLTACASADDGANVELAEIAMERLIKLE-P--------FNDGNYVLMSNIYAA 448 (519)
Q Consensus 385 ~A~~~---~~~~-~~~p---~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~ 448 (519)
.+.++ .... ...| ..........++.. .|+.+.|...++.+.... . .........+.++..
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~ 319 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG---AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA 319 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence 33332 1111 1101 11222245555677 889999999999887633 1 134555677778889
Q ss_pred cCCchHHHHHHHHHHhCC
Q 048578 449 KAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 449 ~g~~~~A~~~~~~m~~~~ 466 (519)
.|++++|.+.+.......
T Consensus 320 ~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 320 EGNYATALELLGPVRDDL 337 (355)
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 999999999998887644
No 84
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.97 E-value=1.4e-08 Score=92.03 Aligned_cols=247 Identities=13% Similarity=0.049 Sum_probs=131.9
Q ss_pred HHhcCChHHHHHHHhcCCC--C--chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHH
Q 048578 174 YCNFGDVKSAQLLFDQMTE--K--NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELG 249 (519)
Q Consensus 174 ~~~~g~~~~A~~~~~~~~~--~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 249 (519)
+.-.|++..++.-.+ ... + +.....-+.+++...|+++.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 444677777775444 211 1 2234455667788888776544 3333332 55655555555444433333333
Q ss_pred HHHHHHHHHcCCC-cchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 048578 250 KWVHEFVNKNCII-LNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIK 328 (519)
Q Consensus 250 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 328 (519)
..-++........ .+..+......++...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+. .
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 3333332222222 23333333345566677777777777654 45556666677777777777777777777653 2
Q ss_pred CCHHHHHHHHHHHhc----cCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHH
Q 048578 329 PDDVTLIAVLTACSH----AGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLW 402 (519)
Q Consensus 329 p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~ 402 (519)
.| .+...+..++.. .+.+..|..+|+++.. ...+++.+.+.+..++...|++++|.+++++. ...| +..+.
T Consensus 162 eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 162 ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 23 334444444322 2356777777777665 34456666666777777777777777766665 3344 33355
Q ss_pred HHHHHHHccccCCCCH-HHHHHHHHHHHhhCCCC
Q 048578 403 GSLLTACASADDGANV-ELAEIAMERLIKLEPFN 435 (519)
Q Consensus 403 ~~ll~~~~~~~~~~~~-~~a~~~~~~~~~~~p~~ 435 (519)
..++..... .|+. +.+.+++.++....|..
T Consensus 239 aNliv~~~~---~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 239 ANLIVCSLH---LGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHH---TT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHH---hCCChhHHHHHHHHHHHhCCCC
Confidence 555555555 4444 55666666666666653
No 85
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.95 E-value=6.4e-08 Score=87.76 Aligned_cols=245 Identities=13% Similarity=0.070 Sum_probs=134.4
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHH
Q 048578 203 NGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIE 282 (519)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 282 (519)
+-+.-.|++..++.-.+ ........+......+.+++...|+.+.+. ..+.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34455677777765554 222221222334445566666677655432 3333333 455555555544444434555
Q ss_pred HHHHHHhhcCCCC-h---hhHH-HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHc
Q 048578 283 EALRVFKIVLEKN-V---CTWN-SIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNM 357 (519)
Q Consensus 283 ~a~~~~~~~~~~~-~---~~~~-~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 357 (519)
.+..-++...... . .++. .....+...|++++|++++.+. .+.......+.++.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555554443221 1 1111 1223344567777777766532 34556666677777777777777777777
Q ss_pred HHhcCCCCChhHHHHHHHHHH----hcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhh
Q 048578 358 RRDYKVEPNVKHYGCLVDLLC----RARLLDEAYEVIRNM--PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKL 431 (519)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 431 (519)
.+ +..| .+...++.++. -.+.+.+|..+|+++ ...++..+.+.+..++.. .|++++|.+.++++.+.
T Consensus 158 ~~---~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~---~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 158 QQ---IDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ---LGHYEEAEELLEEALEK 230 (290)
T ss_dssp HC---CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH---CT-HHHHHHHHHHHCCC
T ss_pred Hh---cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHh
Confidence 65 2233 22333333332 233577777777777 444566677777777777 77777777777777777
Q ss_pred CCCCCchHHHHHHHHHhcCCc-hHHHHHHHHHHhC
Q 048578 432 EPFNDGNYVLMSNIYAAKAQW-DDAGKMRRLMKER 465 (519)
Q Consensus 432 ~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 465 (519)
+|.++.++..++-+....|+. +.+.+++.+++..
T Consensus 231 ~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 231 DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp -CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 777777777777777777766 5566677766654
No 86
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.94 E-value=3.4e-05 Score=74.12 Aligned_cols=420 Identities=11% Similarity=0.023 Sum_probs=248.7
Q ss_pred CCcccHHH-HHHhccCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCC---CCCcchHHHHH
Q 048578 28 TKSHHHLP-LLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQII---NPSTFAFNTVI 103 (519)
Q Consensus 28 p~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll 103 (519)
|++....- .|.+.++..++......-.+.. ..+.+.|..+.-.+... .++++|++.|.... +.|...|.-+-
T Consensus 41 geslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~d---K~Y~eaiKcy~nAl~~~~dN~qilrDls 116 (700)
T KOG1156|consen 41 GESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSD---KKYDEAIKCYRNALKIEKDNLQILRDLS 116 (700)
T ss_pred chhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhh---hhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 44444433 3444466666666555555432 33566777776666666 89999999999873 34566777777
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCc-chHHHHHHHHcCccc---hHHHHHHHHHhCCCCCchhHHHHH------HHH
Q 048578 104 RGYAEAGLGHRGIQLYTQMIGNGLDPDS-FTYPILLKACGDLRQ---VKGVHSLVVKSKDFNSVIHSLTRL------ITF 173 (519)
Q Consensus 104 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l------~~~ 173 (519)
-.-++.|+++.....-....+. .|+. ..|.....+..-.|+ +-.+.+.+.+...-.|+...+... ...
T Consensus 117 lLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i 194 (700)
T KOG1156|consen 117 LLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQI 194 (700)
T ss_pred HHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 7777889999888888888773 3444 356666666666666 444444444444234555444332 345
Q ss_pred HHhcCChHHHHHHHhcCCC--Cchh-HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-ccCC-hHH
Q 048578 174 YCNFGDVKSAQLLFDQMTE--KNVV-TWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACA-NLGA-SEL 248 (519)
Q Consensus 174 ~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-~~~~-~~~ 248 (519)
..+.|..++|.+.+..... -|-. .-.+-...+.+.+++++|..++..+... .||..-|...+..+. +-.+ .+.
T Consensus 195 ~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~ 272 (700)
T KOG1156|consen 195 LIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEA 272 (700)
T ss_pred HHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHH
Confidence 6678889999988877654 2222 2344566788999999999999999987 577777766665544 3333 333
Q ss_pred HHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHH-HHHHhhcCCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHH--
Q 048578 249 GKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEA-LRVFKIVLEKN-VCTWNSIIGGLAIHGCGEEAVKMFWQMQM-- 324 (519)
Q Consensus 249 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-- 324 (519)
...+|....+.- +........=++ .....++... -.++....+.+ +.++..+...|-.....+-..++...+..
T Consensus 273 lk~ly~~ls~~y-~r~e~p~Rlpls-vl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L 350 (700)
T KOG1156|consen 273 LKALYAILSEKY-PRHECPRRLPLS-VLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSL 350 (700)
T ss_pred HHHHHHHHhhcC-cccccchhccHH-HhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhc
Confidence 335555554421 111111110011 1111222222 22333333332 23344444433322222211122222211
Q ss_pred --CC----------CCCCHH--HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHH
Q 048578 325 --SG----------IKPDDV--TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN-VKHYGCLVDLLCRARLLDEAYEV 389 (519)
Q Consensus 325 --~g----------~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~ 389 (519)
.| -+|... |+..++..+-..|+++.|..+++.... . .|+ +..|..-.+.+...|++++|..+
T Consensus 351 ~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--H-TPTliEly~~KaRI~kH~G~l~eAa~~ 427 (700)
T KOG1156|consen 351 SGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--H-TPTLIELYLVKARIFKHAGLLDEAAAW 427 (700)
T ss_pred ccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--c-CchHHHHHHHHHHHHHhcCChHHHHHH
Confidence 11 144443 566778888999999999999998876 2 344 45666777889999999999999
Q ss_pred HHhC-CCC-CCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC---C---C-chHH--HHHHHHHhcCCchHHHHH
Q 048578 390 IRNM-PME-PNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF---N---D-GNYV--LMSNIYAAKAQWDDAGKM 458 (519)
Q Consensus 390 ~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~---~---~-~~~~--~l~~~~~~~g~~~~A~~~ 458 (519)
+++. ++. ||...-.--..-..+ .++.++|.++..+.-+.+-+ + . -.|. .=+.+|.++|++..|++-
T Consensus 428 l~ea~elD~aDR~INsKcAKYmLr---An~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKk 504 (700)
T KOG1156|consen 428 LDEAQELDTADRAINSKCAKYMLR---ANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKK 504 (700)
T ss_pred HHHHHhccchhHHHHHHHHHHHHH---ccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHH
Confidence 9988 433 444444345555666 77888888888877665532 1 1 1222 235678888888888876
Q ss_pred HHHHH
Q 048578 459 RRLMK 463 (519)
Q Consensus 459 ~~~m~ 463 (519)
|..+.
T Consensus 505 fh~i~ 509 (700)
T KOG1156|consen 505 FHEIE 509 (700)
T ss_pred HhhHH
Confidence 65543
No 87
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=4.5e-08 Score=92.00 Aligned_cols=219 Identities=16% Similarity=0.094 Sum_probs=172.2
Q ss_pred HhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHH
Q 048578 240 CANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK---NVCTWNSIIGGLAIHGCGEEAV 316 (519)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~ 316 (519)
+.+.|++..|.-.|+...+.+ |-+...|..|.......++-..|+..+.+..+- |..+.-+|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 457788888888888888876 667888888888888888888888888888653 5566777777888888888899
Q ss_pred HHHHHHHHCCCC-----C---CHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 048578 317 KMFWQMQMSGIK-----P---DDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYE 388 (519)
Q Consensus 317 ~~~~~m~~~g~~-----p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 388 (519)
..+++-+....+ + +..+-.. ..+.....+.+..++|-.+....+..+|+.....|.-.|--.|.+++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 988887653210 0 0000000 12333344556666666666655666888899999999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 389 VIRNM-PMEPN-AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 389 ~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
.|+.. .++|+ ...||.|...++. ..+.++|+..|.+++++.|.-.+++..|+-.|...|.|++|.+.|=....
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN---~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLAN---GNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcC---CcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99998 77885 4589999888999 88999999999999999999999999999999999999999998876654
No 88
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.87 E-value=7.3e-06 Score=72.44 Aligned_cols=297 Identities=12% Similarity=0.064 Sum_probs=201.6
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHH---HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH-HHHH
Q 048578 163 VIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMI---NGHVKQKNYREGIDLFRKMRDSGVEVNELTLV-SVLS 238 (519)
Q Consensus 163 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~ 238 (519)
++.-..-+...+...|++..|+.-|....+-|+..|.++. ..|...|+...|+.-+....+. +||-..-. .-..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 3344445666777888888898888888887777666654 4678888888888888887764 56543222 1233
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCcc--------------hhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHH
Q 048578 239 ACANLGASELGKWVHEFVNKNCIILN--------------DKLGAALTDMYAKCGYIEEALRVFKIVLEK---NVCTWNS 301 (519)
Q Consensus 239 ~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ 301 (519)
.+.+.|.++.|..-|+.+++.....+ .......+..+...|+...|+.....+.+- |...+..
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~ 194 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQA 194 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHH
Confidence 46788888888888888887652111 111223444566678888888888777553 6667777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhH----HHHH----
Q 048578 302 IIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKH----YGCL---- 373 (519)
Q Consensus 302 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~l---- 373 (519)
-..+|...|.+..|+.=++..-+.. .-+..++.-+-..+...|+.+.++...++..+ +.||-.. |..|
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcchhhHHHHHHHHHHHH
Confidence 7888888888888887777665532 33445666777778888888888888877765 4455321 1111
Q ss_pred -----HHHHHhcCChHHHHHHHHhC-CCCCCH--HHHHH---HHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 048578 374 -----VDLLCRARLLDEAYEVIRNM-PMEPNA--VLWGS---LLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLM 442 (519)
Q Consensus 374 -----~~~~~~~~~~~~A~~~~~~~-~~~p~~--~~~~~---ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 442 (519)
+....+.++|.++++..+.. ...|.. ..++. +-.++.. .+++-+|++...+++..+|+|..++..-
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~---d~~~~eAiqqC~evL~~d~~dv~~l~dR 347 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRE---DEQFGEAIQQCKEVLDIDPDDVQVLCDR 347 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccc---cCCHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 12234566777777776665 445542 22332 2223333 7889999999999999999989999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCCCc
Q 048578 443 SNIYAAKAQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 443 ~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (519)
+.+|.-...+++|+.-|++..+.+..
T Consensus 348 AeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 348 AEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 99999888999999888888766554
No 89
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=1.2e-06 Score=75.78 Aligned_cols=311 Identities=13% Similarity=0.078 Sum_probs=141.9
Q ss_pred CCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC--CchhHHHH-HH
Q 048578 127 LDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNS-VIHSLTRLITFYCNFGDVKSAQLLFDQMTE--KNVVTWTA-MI 202 (519)
Q Consensus 127 ~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li 202 (519)
+......|.+++..+.+..+...+.+.+...++..| +......|..+|....++..|-.+++++.. |...-|.. -.
T Consensus 6 ~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~A 85 (459)
T KOG4340|consen 6 AQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQA 85 (459)
T ss_pred ccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 333334455555555555554444444444433333 444455555666666666666666666544 33222221 12
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH--HHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCC
Q 048578 203 NGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLS--ACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGY 280 (519)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 280 (519)
..+-+.+.+.+|+++...|.+. |+...-..-+. .....+|+..+..+.++....| +..+.+...-...+.|+
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecccc
Confidence 3444555566666665555432 11111111111 1223344444444444433211 22222223333344455
Q ss_pred HHHHHHHHhhcCCC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH-----HHHHHhccCcHHHHH
Q 048578 281 IEEALRVFKIVLEK----NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIA-----VLTACSHAGLIEKGK 351 (519)
Q Consensus 281 ~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-----l~~~~~~~g~~~~a~ 351 (519)
++.|.+-|+...+- ...+|+..+. ..+.|+++.|++...+++++|++.-.. +++ .+.+ ...|+. .
T Consensus 160 yEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPE-lgIGm~tegiDv-rsvgNt---~ 233 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPE-LGIGMTTEGIDV-RSVGNT---L 233 (459)
T ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCc-cCccceeccCch-hcccch---H
Confidence 55555555444331 2233333222 223444555555555555444321000 000 0000 000000 0
Q ss_pred HHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHH
Q 048578 352 EIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM----PMEPNAVLWGSLLTACASADDGANVELAEIAMER 427 (519)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~ 427 (519)
.+... --+..+|.-.-.+.+.|+++.|.+.+..| ....|++|...+.-.-. .+++-...+-+.-
T Consensus 234 ~lh~S--------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~----~~~p~~g~~KLqF 301 (459)
T KOG4340|consen 234 VLHQS--------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM----DARPTEGFEKLQF 301 (459)
T ss_pred HHHHH--------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc----cCCccccHHHHHH
Confidence 00000 00122333344456777888888887777 22345566555433322 3445555666666
Q ss_pred HHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 048578 428 LIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRL 461 (519)
Q Consensus 428 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (519)
+++++|-.+.+|..++..|++..-++-|..++-+
T Consensus 302 LL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 302 LLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 6777777778888888888888777777776643
No 90
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=1.1e-05 Score=71.53 Aligned_cols=371 Identities=13% Similarity=0.058 Sum_probs=220.4
Q ss_pred CChHHHHHHHhcCCCCC---c-chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHH
Q 048578 79 SQIAYAHLVFNQIINPS---T-FAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLV 154 (519)
Q Consensus 79 ~~~~~A~~~~~~~~~~~---~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ 154 (519)
.++..|+.+++.-...+ . .+---+..++...|++++|+..|.-+.+.. .|+...+..+.....-.|...++...+
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~ 114 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIA 114 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 67888887776543211 1 122224567778999999999999988753 455555555555555566666666666
Q ss_pred HHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 048578 155 VKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLV 234 (519)
Q Consensus 155 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 234 (519)
.+.. .++..-..+...-.+.++-++-..+-+.+... ..---+|....-..-.+.+|+++|.+.... .|+-...+
T Consensus 115 ~ka~---k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alN 188 (557)
T KOG3785|consen 115 EKAP---KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALN 188 (557)
T ss_pred hhCC---CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhH
Confidence 5543 23333444556666777766666655555432 222334455545556789999999999876 45555565
Q ss_pred HHHHH-HhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhc--CCHHH--HHHHHhhcC----------CC-----
Q 048578 235 SVLSA-CANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKC--GYIEE--ALRVFKIVL----------EK----- 294 (519)
Q Consensus 235 ~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~--a~~~~~~~~----------~~----- 294 (519)
.-+.. |.+..-++.+..++...++.- +.++...|.......+. |+..+ -.++-+.+. +.
T Consensus 189 Vy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvF 267 (557)
T KOG3785|consen 189 VYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVF 267 (557)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEE
Confidence 55544 567777788888877776653 44444455444433332 22211 111211111 11
Q ss_pred ----------------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HhccCcHHHHHHH
Q 048578 295 ----------------NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTA-----CSHAGLIEKGKEI 353 (519)
Q Consensus 295 ----------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~-----~~~~g~~~~a~~~ 353 (519)
=+.+-..++-.|.+.+++.+|..+.+++.- ..|-......+..+ ........-|.+.
T Consensus 268 rngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqf 345 (557)
T KOG3785|consen 268 RNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQF 345 (557)
T ss_pred eCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Confidence 122334455567788899999888877542 23433333222222 1222234556666
Q ss_pred HHHcHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHh
Q 048578 354 FYNMRRDYKVEPN-VKHYGCLVDLLCRARLLDEAYEVIRNM--PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIK 430 (519)
Q Consensus 354 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~ 430 (519)
|+..-+ .+...| +.--.++...+.-..++++++-.++.+ -+..|....-.+.++.+. .|++.+|+++|-++..
T Consensus 346 fqlVG~-Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~a---tgny~eaEelf~~is~ 421 (557)
T KOG3785|consen 346 FQLVGE-SALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLA---TGNYVEAEELFIRISG 421 (557)
T ss_pred HHHhcc-cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHH---hcChHHHHHHHhhhcC
Confidence 655544 343333 223345666677777888888888777 223333333457788888 8999999999987766
Q ss_pred hCCCCCchHH-HHHHHHHhcCCchHHHHHHHHHH
Q 048578 431 LEPFNDGNYV-LMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 431 ~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
.+-.|..+|. .|+++|.+.|+.+-|+.++-++.
T Consensus 422 ~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 422 PEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN 455 (557)
T ss_pred hhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 6644555554 67889999999999998876653
No 91
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=9.5e-06 Score=70.31 Aligned_cols=387 Identities=11% Similarity=0.020 Sum_probs=205.3
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHH-HHH
Q 048578 66 TQLAKLIESLVNSSQIAYAHLVFNQIIN---PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILL-KAC 141 (519)
Q Consensus 66 ~~ll~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~ 141 (519)
++.+..+.+. .++++|++++....+ ++....+.+..+|....++..|-..|+++-.. .|...-|...- ..+
T Consensus 14 taviy~lI~d---~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 14 TAVVYRLIRD---ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred HHHHHHHHHH---hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 3444444455 667777766665533 24455666666677777777777777776652 34333332111 111
Q ss_pred cCccchHHHHHHHHHhCCCCCchh--HHHHHHHHHHhcCChHHHHHHHhcCCC-CchhHHHHHHHHHHHcCChhHHHHHH
Q 048578 142 GDLRQVKGVHSLVVKSKDFNSVIH--SLTRLITFYCNFGDVKSAQLLFDQMTE-KNVVTWTAMINGHVKQKNYREGIDLF 218 (519)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~ 218 (519)
-+.+....++..+...+ -.++.. +...-.......+++..+..++++... .+..+.+...-...+.|+++.|.+-|
T Consensus 89 Y~A~i~ADALrV~~~~~-D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLL-DNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred HHhcccHHHHHHHHHhc-CCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 12222222222222222 111111 111111223456777777778877774 45555555555566778888888888
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCc-------------c---------------hhHHH
Q 048578 219 RKMRDS-GVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIIL-------------N---------------DKLGA 269 (519)
Q Consensus 219 ~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~---------------~~~~~ 269 (519)
+...+- |.. ....|+..+ ++.+.++.+.|.+...++..+|+.. | ...+|
T Consensus 168 qaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 168 QAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 777665 444 344565544 3446677788888877777765421 1 11223
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCC-----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 048578 270 ALTDMYAKCGYIEEALRVFKIVLEK-----NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHA 344 (519)
Q Consensus 270 ~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 344 (519)
.-...+.+.|+++.|.+.+-.|+.+ |++|...+.-.- ..+++.+..+-++-+.... +....||..++-.||+.
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKN 323 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKN 323 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhh
Confidence 3333456788999999998888654 666655543321 2345555555555555543 33456888888899999
Q ss_pred CcHHHHHHHHHHcHHhcCCC-CChhHHHHHHHHHHhc-CChHHHHHHHHhC-C-CCCCHHHHHHHHHHHccccCCCCHHH
Q 048578 345 GLIEKGKEIFYNMRRDYKVE-PNVKHYGCLVDLLCRA-RLLDEAYEVIRNM-P-MEPNAVLWGSLLTACASADDGANVEL 420 (519)
Q Consensus 345 g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~~~~~~~~~ 420 (519)
.-++.|-+++-+-.. .... .+...|+ |++++..+ -..++|.+-++.+ + +.-......+-++--...++......
T Consensus 324 eyf~lAADvLAEn~~-lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ 401 (459)
T KOG4340|consen 324 EYFDLAADVLAENAH-LTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRK 401 (459)
T ss_pred HHHhHHHHHHhhCcc-hhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 999988888765432 1111 1223333 44444443 3566666555544 1 00000011111111111001111223
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 421 AEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 421 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
+.+-++..++.. .......++.|.+..++..++++|+.-.+.--
T Consensus 402 ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ 445 (459)
T KOG4340|consen 402 AVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCN 445 (459)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhc
Confidence 333444444443 11344567778899999999999988766443
No 92
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.83 E-value=2.9e-05 Score=68.73 Aligned_cols=310 Identities=14% Similarity=0.110 Sum_probs=182.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHH---HHcCccchHHHHHHHHHhCCCCCchh-HHHHHHHHHHh
Q 048578 101 TVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLK---ACGDLRQVKGVHSLVVKSKDFNSVIH-SLTRLITFYCN 176 (519)
Q Consensus 101 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~ 176 (519)
-+...+..+|++..|+.-|....+ .|+..|..+.+ .|...|+.+.++..+.+.-.+.|+-. .-..-...+.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence 356777888999999999998877 34555554443 22233332222222222111333311 11112234455
Q ss_pred cCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 048578 177 FGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFV 256 (519)
Q Consensus 177 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 256 (519)
.|+++.|..-|+.+.+.++. -+....++.+.-..++-. .....+..+...|+...|......+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s-~~~~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPS-NGLVLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred cccHHHHHHHHHHHHhcCCC-cchhHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhhHHHHHHHH
Confidence 55666655555555432110 000111111111111111 1122333445567777777777777
Q ss_pred HHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhc---CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 048578 257 NKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIV---LEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVT 333 (519)
Q Consensus 257 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 333 (519)
++.. +=+...+..-..+|...|++..|+.-+... ...+...+.-+-..+...|+.+.++...++-.+ +.||...
T Consensus 182 lEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~ 258 (504)
T KOG0624|consen 182 LEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKL 258 (504)
T ss_pred HhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhh
Confidence 7653 335556666677888888888887666544 445666666677777788888888887777766 4666542
Q ss_pred ----HHHH---------HHHHhccCcHHHHHHHHHHcHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 048578 334 ----LIAV---------LTACSHAGLIEKGKEIFYNMRRDYKVEPN-----VKHYGCLVDLLCRARLLDEAYEVIRNM-P 394 (519)
Q Consensus 334 ----~~~l---------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~-~ 394 (519)
|..+ +......++|.++.+..+...+. .|. ...+..+-.++..-+++.+|++...+. .
T Consensus 259 Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~ 335 (504)
T KOG0624|consen 259 CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD 335 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh
Confidence 1111 12244567788888777777662 233 223445556677788999999888887 7
Q ss_pred CCCC-HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHH
Q 048578 395 MEPN-AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYV 440 (519)
Q Consensus 395 ~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (519)
+.|+ ..++.--..+|.- ...++.|+.-|+++.+.+++|..+-.
T Consensus 336 ~d~~dv~~l~dRAeA~l~---dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 336 IDPDDVQVLCDRAEAYLG---DEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred cCchHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 7776 5677777788888 78899999999999999988765543
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.5e-05 Score=74.78 Aligned_cols=401 Identities=14% Similarity=0.072 Sum_probs=246.9
Q ss_pred cCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCC--CCCc-chHHHHHHHHHhcCChhHHHH
Q 048578 41 THLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQII--NPST-FAFNTVIRGYAEAGLGHRGIQ 117 (519)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~--~~~~-~~~~~ll~~~~~~g~~~~a~~ 117 (519)
....++...+...+... ++|...|+.=...|+.. |++++|++=-.+.+ .|+. ..|+....++.-.|++++|+.
T Consensus 16 ~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~---~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASL---GSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccHHHHHHHHHHHHccC-CCccchhcchHHHHHHH---hhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 44555567777777665 34788888888999999 99999987665553 3554 479999999999999999999
Q ss_pred HHHHHHhCCCCCCc-chHHHHHHHHcCc---cc---hHHHHHHHHHhCC--CCCchhHHHHHHHH----------HHhcC
Q 048578 118 LYTQMIGNGLDPDS-FTYPILLKACGDL---RQ---VKGVHSLVVKSKD--FNSVIHSLTRLITF----------YCNFG 178 (519)
Q Consensus 118 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~---~~---~~~~~~~~~~~~~--~~~~~~~~~~l~~~----------~~~~g 178 (519)
-|.+-++. .|+. ..++-+..+.... ++ -..++.-+..... .......|..++.. |....
T Consensus 92 ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~ 169 (539)
T KOG0548|consen 92 AYSEGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDP 169 (539)
T ss_pred HHHHHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccH
Confidence 99998874 3543 3555565555111 00 0000000000000 00001112222111 11111
Q ss_pred ChHHHHHHHhcCC----------------CC------------c----------hhHHHHHHHHHHHcCChhHHHHHHHH
Q 048578 179 DVKSAQLLFDQMT----------------EK------------N----------VVTWTAMINGHVKQKNYREGIDLFRK 220 (519)
Q Consensus 179 ~~~~A~~~~~~~~----------------~~------------~----------~~~~~~li~~~~~~~~~~~a~~~~~~ 220 (519)
++..|...+.... .| | ..-...+..+..+..+++.|++.+..
T Consensus 170 r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~ 249 (539)
T KOG0548|consen 170 RLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAK 249 (539)
T ss_pred HHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 1222222221111 01 0 12345577778888899999999988
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCc------chhHHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 048578 221 MRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIIL------NDKLGAALTDMYAKCGYIEEALRVFKIVLEK 294 (519)
Q Consensus 221 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 294 (519)
..... -+..-++....++...|.+...........+.|-.. =...+..+..+|.+.++++.++..|.+...+
T Consensus 250 a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte 327 (539)
T KOG0548|consen 250 ALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTE 327 (539)
T ss_pred HHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhh
Confidence 87754 344445555566888887777776666655554211 1112223445777788899999999885432
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHH
Q 048578 295 NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDV-TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCL 373 (519)
Q Consensus 295 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 373 (519)
... -....+....+++........- +.|... -...-...+.+.|++..|+..|.++.+ ..+-|...|...
T Consensus 328 ~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk--r~P~Da~lYsNR 398 (539)
T KOG0548|consen 328 HRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK--RDPEDARLYSNR 398 (539)
T ss_pred hcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh--cCCchhHHHHHH
Confidence 111 1112233344555555444433 234332 233336678889999999999999988 346778899999
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 048578 374 VDLLCRARLLDEAYEVIRNM-PMEPNAV-LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQ 451 (519)
Q Consensus 374 ~~~~~~~~~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (519)
.-+|.+.|.+..|+.-.+.. .+.|+.. .|..=..++.. ..+++.|.+.|++.++.+|.+..+...+.+++.....
T Consensus 399 Aac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~---mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~ 475 (539)
T KOG0548|consen 399 AACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRA---MKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRG 475 (539)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhc
Confidence 99999999999999877776 5566543 45544455555 6789999999999999999988888888877775433
Q ss_pred chHHHHHHHH
Q 048578 452 WDDAGKMRRL 461 (519)
Q Consensus 452 ~~~A~~~~~~ 461 (519)
-+...++.++
T Consensus 476 ~~~~ee~~~r 485 (539)
T KOG0548|consen 476 DETPEETKRR 485 (539)
T ss_pred CCCHHHHHHh
Confidence 3444444444
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.83 E-value=3.6e-05 Score=83.44 Aligned_cols=297 Identities=9% Similarity=-0.025 Sum_probs=192.9
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCC----C----c--h--hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH----H
Q 048578 168 TRLITFYCNFGDVKSAQLLFDQMTE----K----N--V--VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNE----L 231 (519)
Q Consensus 168 ~~l~~~~~~~g~~~~A~~~~~~~~~----~----~--~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~ 231 (519)
......+...|++++|...+..... . + . .....+...+...|++++|...+++....-...+. .
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 3445556678999998888876532 1 1 1 11222344567899999999999987763111121 2
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCC---C--cchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------CC----
Q 048578 232 TLVSVLSACANLGASELGKWVHEFVNKNCI---I--LNDKLGAALTDMYAKCGYIEEALRVFKIVLE-------KN---- 295 (519)
Q Consensus 232 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~---- 295 (519)
..+.+...+...|+++.|...++....... . ........+...+...|++++|...+++... ++
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 344555567789999999999888765321 1 1123455667788899999999998876532 11
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHH-
Q 048578 296 VCTWNSIIGGLAIHGCGEEAVKMFWQMQMS--GIKPD--DVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHY- 370 (519)
Q Consensus 296 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~- 370 (519)
...+..+...+...|++++|...+++.... ...+. ...+..+.......|+++.|...++..............+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 122344556677789999999999887542 11222 2345556677888999999999988875521111111111
Q ss_pred ----HHHHHHHHhcCChHHHHHHHHhC-CCC-CCHH----HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCC------C
Q 048578 371 ----GCLVDLLCRARLLDEAYEVIRNM-PME-PNAV----LWGSLLTACASADDGANVELAEIAMERLIKLEP------F 434 (519)
Q Consensus 371 ----~~l~~~~~~~~~~~~A~~~~~~~-~~~-p~~~----~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p------~ 434 (519)
...+..+...|+.+.|..++... ... .... .+..+..++.. .|+.++|...++++..... .
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~---~g~~~~A~~~l~~al~~~~~~g~~~~ 729 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL---LGQFDEAEIILEELNENARSLRLMSD 729 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHhCchHH
Confidence 11234456689999999998776 211 1111 13445556777 8899999999999886531 1
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 435 NDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
...+...++.++.+.|+.++|...+++..+..-
T Consensus 730 ~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 730 LNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 234677888999999999999999999876553
No 95
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.81 E-value=5.6e-05 Score=74.15 Aligned_cols=391 Identities=15% Similarity=0.066 Sum_probs=235.0
Q ss_pred HHHhccCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCC----C-CcchHHHHHHHHHh-c
Q 048578 36 LLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN----P-STFAFNTVIRGYAE-A 109 (519)
Q Consensus 36 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~----~-~~~~~~~ll~~~~~-~ 109 (519)
.+.-|+...-+-+.|++...-- -.....|..+...|... |.-..|..+++.-.. | ++..+-..-..|.+ -
T Consensus 332 al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saa---g~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l 407 (799)
T KOG4162|consen 332 ALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAA---GSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERL 407 (799)
T ss_pred HHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHh---ccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhch
Confidence 4444555555555555554332 33456788888888888 999999999987733 3 23334333344444 4
Q ss_pred CChhHHHHHHHHHHhC--CC--CCCcchHHHHHHHHcCccc-----------hHHHHHHHHHhCCCCC-chhHHHHHHHH
Q 048578 110 GLGHRGIQLYTQMIGN--GL--DPDSFTYPILLKACGDLRQ-----------VKGVHSLVVKSKDFNS-VIHSLTRLITF 173 (519)
Q Consensus 110 g~~~~a~~~~~~m~~~--g~--~p~~~~~~~ll~~~~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~~~l~~~ 173 (519)
+.+++++..-.+.... |. ...+..|..+--+|+..-. -.+.++.+.+.-.+.| |+.+...+.--
T Consensus 408 ~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq 487 (799)
T KOG4162|consen 408 KLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQ 487 (799)
T ss_pred hhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 6777777776666652 11 1222334433333332211 2233333333321222 23333344445
Q ss_pred HHhcCChHHHHHHHhcCCC----CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHH
Q 048578 174 YCNFGDVKSAQLLFDQMTE----KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELG 249 (519)
Q Consensus 174 ~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 249 (519)
|+..++++.|.+..++... .++..|..+.-++...+++.+|+.+.+.....- ..|......-+..-...++.+.+
T Consensus 488 ~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~ 566 (799)
T KOG4162|consen 488 YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEA 566 (799)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHH
Confidence 7888999999998887654 567899999999999999999999998876541 11111111112222234444444
Q ss_pred HHHHHHHHH---------------------cCC-------CcchhHHHHHHHHHHhcC---CHHHHHHHHhhcCCCC---
Q 048578 250 KWVHEFVNK---------------------NCI-------ILNDKLGAALTDMYAKCG---YIEEALRVFKIVLEKN--- 295 (519)
Q Consensus 250 ~~~~~~~~~---------------------~~~-------~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~--- 295 (519)
......+.. .|. ...+.++..+.......+ ..+..+..+.....++
T Consensus 567 l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~ 646 (799)
T KOG4162|consen 567 LDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLW 646 (799)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchH
Confidence 433322221 010 011112222211111111 0111111111111222
Q ss_pred ---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHH
Q 048578 296 ---VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGC 372 (519)
Q Consensus 296 ---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 372 (519)
...|......+.+.+..++|...+.+..... .-....|......+...|.+++|.+.|..... --+.++.+..+
T Consensus 647 ~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~A 723 (799)
T KOG4162|consen 647 YLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTA 723 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHH
Confidence 2346667778889999999988888776532 33445777777888899999999999988876 23334678889
Q ss_pred HHHHHHhcCChHHHHH--HHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCc
Q 048578 373 LVDLLCRARLLDEAYE--VIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDG 437 (519)
Q Consensus 373 l~~~~~~~~~~~~A~~--~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (519)
+..++.+.|+..-|.. ++..+ .+.| +...|..+...+.. .|+.+.|.+.|..+.++.+.+|.
T Consensus 724 la~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~---~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 724 LAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK---LGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---ccchHHHHHHHHHHHhhccCCCc
Confidence 9999999998777776 88777 7777 56789999999999 99999999999999999876654
No 96
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.80 E-value=4.4e-07 Score=81.03 Aligned_cols=184 Identities=10% Similarity=-0.055 Sum_probs=113.8
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---h---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCH-HHH
Q 048578 263 LNDKLGAALTDMYAKCGYIEEALRVFKIVLEKN---V---CTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIK-PDD-VTL 334 (519)
Q Consensus 263 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-p~~-~~~ 334 (519)
.....+..+...+...|++++|...|+++...+ . .++..+..++...|++++|...++++.+..-. |.. .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 344556666667777777777777777664421 1 34566667777777777777777777654211 111 134
Q ss_pred HHHHHHHhcc--------CcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHH
Q 048578 335 IAVLTACSHA--------GLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLL 406 (519)
Q Consensus 335 ~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll 406 (519)
..+..++... |+++.|.+.|+.+.+. .+.+...+..+..... ...... .....+.
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~~~-----------~~~~~~a 173 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNRLA-----------GKELYVA 173 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHHHH-----------HHHHHHH
Confidence 4444455443 5667777777777652 1122222222111100 000000 0011344
Q ss_pred HHHccccCCCCHHHHHHHHHHHHhhCCCC---CchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 407 TACASADDGANVELAEIAMERLIKLEPFN---DGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
..+.. .|++++|...++++++..|++ +.++..++.++.+.|++++|..+++.+..+.
T Consensus 174 ~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 174 RFYLK---RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHH---cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 55777 899999999999999987764 4789999999999999999999999887654
No 97
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.80 E-value=3.9e-07 Score=78.05 Aligned_cols=149 Identities=13% Similarity=0.118 Sum_probs=113.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCC
Q 048578 303 IGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARL 382 (519)
Q Consensus 303 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 382 (519)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+ .-+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 3456677777776544433221 11 012236677788888888776 456788899999999999999
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHH-ccccCCCC--HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHH
Q 048578 383 LDEAYEVIRNM-PMEP-NAVLWGSLLTAC-ASADDGAN--VELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGK 457 (519)
Q Consensus 383 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~-~~~~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 457 (519)
+++|...|++. .+.| +...+..+..++ .. .|+ .++|.++++++++.+|.++.++..++..+.+.|++++|..
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~---~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQ---AGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH
Confidence 99999999988 6667 445666666653 55 555 5999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCc
Q 048578 458 MRRLMKERNIV 468 (519)
Q Consensus 458 ~~~~m~~~~~~ 468 (519)
.++++.+...+
T Consensus 166 ~~~~aL~l~~~ 176 (198)
T PRK10370 166 LWQKVLDLNSP 176 (198)
T ss_pred HHHHHHhhCCC
Confidence 99999876554
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.77 E-value=3.6e-05 Score=73.61 Aligned_cols=313 Identities=11% Similarity=-0.031 Sum_probs=189.6
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCCHHHHH-HHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHH--
Q 048578 195 VVTWTAMINGHVKQKNYREGIDLFRKMRDSG-VEVNELTLV-SVLSACANLGASELGKWVHEFVNKNCIILNDKLGAA-- 270 (519)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 270 (519)
...|..+...+...|+.+.+.+.+....+.. ..++..... .....+...|+++.|..+++...+.. |.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 3456677777888888888777776665432 122332222 22334567899999999999988874 444444442
Q ss_pred -HHHHHHhcCCHHHHHHHHhhcCCCCh---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 048578 271 -LTDMYAKCGYIEEALRVFKIVLEKNV---CTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGL 346 (519)
Q Consensus 271 -l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 346 (519)
........+..+.+.+.+......+. .....+...+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 12222234556666666655333222 334455668889999999999999998864 4445678888999999999
Q ss_pred HHHHHHHHHHcHHhcCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC--C-HHHH-H--HHHHHHccccCCCC
Q 048578 347 IEKGKEIFYNMRRDYKVEPNV--KHYGCLVDLLCRARLLDEAYEVIRNM-PMEP--N-AVLW-G--SLLTACASADDGAN 417 (519)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p--~-~~~~-~--~ll~~~~~~~~~~~ 417 (519)
+++|...+++........|+. ..|..+...+...|++++|..++++. ...| . .... + .++.-+.. .|.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~g~ 240 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLEL---AGH 240 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHh---cCC
Confidence 999999999988732222332 34557889999999999999999997 3333 2 2111 1 22222333 333
Q ss_pred HHHHHHH---HHHHHhhCCCC--CchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccC-CcccEEEECCEEEEEEeCCCC
Q 048578 418 VELAEIA---MERLIKLEPFN--DGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKN-PGCSVIEINDVVHEFMVGDGR 491 (519)
Q Consensus 418 ~~~a~~~---~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 491 (519)
.+.+.+. ........|.. .......+.++...|+.++|.++++.+........ .+..+..+...+ ........
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~-l~A~~~~~ 319 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPL-AEALYAFA 319 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHH-HHHHHHHH
Confidence 3333332 22211111221 22223677788899999999999999876443310 000010001000 00112235
Q ss_pred CCChhHHHHHHHHHHHHHHhcc
Q 048578 492 HPCSEEIYSMLEYVAISLREEC 513 (519)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~ 513 (519)
.++.+++.+.+.+.......-|
T Consensus 320 ~g~~~~A~~~L~~al~~a~~~g 341 (355)
T cd05804 320 EGNYATALELLGPVRDDLARIG 341 (355)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC
Confidence 6788888888888877765555
No 99
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.76 E-value=1.1e-06 Score=90.76 Aligned_cols=201 Identities=13% Similarity=0.107 Sum_probs=167.9
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC--------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HH
Q 048578 262 ILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK--------NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPD-DV 332 (519)
Q Consensus 262 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ 332 (519)
|-+...|-..|......++.+.|.++.+++... -...|.++++.-..-|.-+...++|+++.+- .| ..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHH
Confidence 455667777888888889999999998887542 2357888888777788888899999998762 34 34
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP---NAVLWGSLLTA 408 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p---~~~~~~~ll~~ 408 (519)
.|..|...|.+.+..++|.++++.|.++++ .....|..++..+.+..+-+.|..++.+. ..-| ......-.+..
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 788999999999999999999999999665 66789999999999999999999999887 3334 33455555666
Q ss_pred HccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccC
Q 048578 409 CASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKN 470 (519)
Q Consensus 409 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 470 (519)
-.+ .|+.+++..+|+..+...|.-...|+.+++.-.++|+.+.++.+|++....++.+.
T Consensus 1610 EFk---~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1610 EFK---YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred Hhh---cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 667 89999999999999999999999999999999999999999999999999998764
No 100
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=0.00017 Score=72.87 Aligned_cols=209 Identities=16% Similarity=0.170 Sum_probs=149.3
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC--CcchhHHHH---------------------------HHHHHHhcC
Q 048578 229 NELTLVSVLSACANLGASELGKWVHEFVNKNCI--ILNDKLGAA---------------------------LTDMYAKCG 279 (519)
Q Consensus 229 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~---------------------------l~~~~~~~g 279 (519)
|+...+....++...+-+.+..++++++.-.+- ..+...-+. +.......+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~ 1062 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQ 1062 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhh
Confidence 555666677777777877777777777653321 111222222 222334445
Q ss_pred CHHHHHHHHhhcCC-------------------------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 048578 280 YIEEALRVFKIVLE-------------------------KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTL 334 (519)
Q Consensus 280 ~~~~a~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 334 (519)
-+++|..+|++... ..+..|..+..+-.+.|.+.+|++-|-+. -|...|
T Consensus 1063 LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y 1136 (1666)
T KOG0985|consen 1063 LYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNY 1136 (1666)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHH
Confidence 66777777765411 13457888888888899988888776542 356789
Q ss_pred HHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccC
Q 048578 335 IAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADD 414 (519)
Q Consensus 335 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 414 (519)
.-+++.+.+.|.|++-.+++...+++ .-.|.+. +.||-+|++.++..+..+++. .||......+..-|..
T Consensus 1137 ~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~--- 1206 (1666)
T KOG0985|consen 1137 LEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFE--- 1206 (1666)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhh---
Confidence 99999999999999999999888774 5556554 478999999999988777663 4788888888888888
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 048578 415 GANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRL 461 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (519)
.+.++.|.-+|.. .+.|..|+..+...|++..|...-++
T Consensus 1207 ~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1207 EKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred hhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8888888877763 66778888888888888777665544
No 101
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=8.3e-05 Score=73.36 Aligned_cols=355 Identities=10% Similarity=0.042 Sum_probs=200.5
Q ss_pred CCchhHHHHHH--HHHhhcCCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC-C--------CC
Q 048578 60 NRTISDTQLAK--LIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGN-G--------LD 128 (519)
Q Consensus 60 ~~~~~~~~ll~--~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g--------~~ 128 (519)
.|+.+--++++ .|... |+.+.|.+..+.+... ..|..|.+.|.+.++.+-|.-.+-.|... | -.
T Consensus 724 Cd~~TRkaml~FSfyvti---G~MD~AfksI~~IkS~--~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTI---GSMDAAFKSIQFIKSD--SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred cCHHHHHhhhceeEEEEe---ccHHHHHHHHHHHhhh--HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 46666666665 34555 8888888777776543 24777777777777777666555555332 1 11
Q ss_pred CCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-CchhHHHHHHHHHHH
Q 048578 129 PDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE-KNVVTWTAMINGHVK 207 (519)
Q Consensus 129 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~ 207 (519)
|+... .-+.......|..+++..+..+.. -|..|-..|-..|.+++|.++-+.-.+ .=..||.....-+-.
T Consensus 799 ~~e~e-akvAvLAieLgMlEeA~~lYr~ck-------R~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 799 GEEDE-AKVAVLAIELGMLEEALILYRQCK-------RYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred Ccchh-hHHHHHHHHHhhHHHHHHHHHHHH-------HHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 22111 111111123344555555554443 244455566677888888776554332 112355556666666
Q ss_pred cCChhHHHHHHHHHH----------hCC---------CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHH
Q 048578 208 QKNYREGIDLFRKMR----------DSG---------VEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLG 268 (519)
Q Consensus 208 ~~~~~~a~~~~~~m~----------~~~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 268 (519)
.++.+.|++.|++.. ... -.-|...|..........|+.|.|..+|....+ |
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~ 941 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------Y 941 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------h
Confidence 777777777766531 111 012444555555555667777777777776655 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----
Q 048578 269 AALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHA---- 344 (519)
Q Consensus 269 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~---- 344 (519)
-++++..+-.|+.++|-++-++ ..|..+...+...|-..|++.+|..+|.+.+. |...|+.|-..
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~e--sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d 1010 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEE--SGDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKD 1010 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHh--cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHH
Confidence 3455666667777777776553 23566677788888888888888888877652 22333322221
Q ss_pred -----------CcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh---------C--CC--CCCHH
Q 048578 345 -----------GLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRN---------M--PM--EPNAV 400 (519)
Q Consensus 345 -----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---------~--~~--~p~~~ 400 (519)
.+.-.|..+|++.-- -+..-+..|.+.|.+.+|+++--+ + .+ ..|+.
T Consensus 1011 ~L~nlal~s~~~d~v~aArYyEe~g~---------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ 1081 (1416)
T KOG3617|consen 1011 RLANLALMSGGSDLVSAARYYEELGG---------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPK 1081 (1416)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHcch---------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHH
Confidence 223334444444321 112234556777777777664211 1 12 23555
Q ss_pred HHHHHHHHHccccCCCCHHHHHHHHHHHHh----------------------hCCC---------CCchHHHHHHHHHhc
Q 048578 401 LWGSLLTACASADDGANVELAEIAMERLIK----------------------LEPF---------NDGNYVLMSNIYAAK 449 (519)
Q Consensus 401 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~----------------------~~p~---------~~~~~~~l~~~~~~~ 449 (519)
..+.-...+.. ..++++|..++-.+.+ +.|. -...+..+++.+.++
T Consensus 1082 ll~RcadFF~~---~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQ 1158 (1416)
T KOG3617|consen 1082 LLRRCADFFEN---NQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQ 1158 (1416)
T ss_pred HHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhc
Confidence 55555555666 6677777766554432 1111 123667889999999
Q ss_pred CCchHHHHHH
Q 048578 450 AQWDDAGKMR 459 (519)
Q Consensus 450 g~~~~A~~~~ 459 (519)
|.|.-|.+-|
T Consensus 1159 G~Yh~AtKKf 1168 (1416)
T KOG3617|consen 1159 GAYHAATKKF 1168 (1416)
T ss_pred cchHHHHHHH
Confidence 9887776543
No 102
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=0.00012 Score=73.97 Aligned_cols=386 Identities=13% Similarity=0.121 Sum_probs=214.9
Q ss_pred CCcccHHHHHHhccCchHHHHHHHHHHHhcCC--CCchhHHHHHHHHHhhcCCCChHHHHHHHhcCC-CCCcc-----hH
Q 048578 28 TKSHHHLPLLQKCTHLVQFKQVHAQIIKASFD--NRTISDTQLAKLIESLVNSSQIAYAHLVFNQII-NPSTF-----AF 99 (519)
Q Consensus 28 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~-~~~~~-----~~ 99 (519)
.|...|..+|.--. ..-+++.++....+++ .|+...+.-++++... +-..+-.++++++. ++++. .-
T Consensus 950 ~D~~LW~~VL~e~n--~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMta---dLp~eLIELLEKIvL~~S~Fse~~nLQ 1024 (1666)
T KOG0985|consen 950 SDPDLWAKVLNEEN--PYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTA---DLPNELIELLEKIVLDNSVFSENRNLQ 1024 (1666)
T ss_pred cChHHHHHHHhccC--hHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhc---CCcHHHHHHHHHHhcCCcccccchhhh
Confidence 45556666653321 1225677777777665 4566677778888887 88888899998883 34333 23
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCC
Q 048578 100 NTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGD 179 (519)
Q Consensus 100 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 179 (519)
|.+|-...+. +..+..+..+++-..+. |+.. ..+...+-.++++..+.+.. .+....+.|+. .-+.
T Consensus 1025 nLLiLtAika-d~trVm~YI~rLdnyDa-~~ia------~iai~~~LyEEAF~ifkkf~---~n~~A~~VLie---~i~~ 1090 (1666)
T KOG0985|consen 1025 NLLILTAIKA-DRTRVMEYINRLDNYDA-PDIA------EIAIENQLYEEAFAIFKKFD---MNVSAIQVLIE---NIGS 1090 (1666)
T ss_pred hhHHHHHhhc-ChHHHHHHHHHhccCCc-hhHH------HHHhhhhHHHHHHHHHHHhc---ccHHHHHHHHH---Hhhh
Confidence 3444433333 33345555555443211 1111 11122222444444444432 22222222222 2244
Q ss_pred hHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 048578 180 VKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKN 259 (519)
Q Consensus 180 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 259 (519)
++.|.++-++..+| ..|..+..+-.+.|...+|++-|-+. .|+..|..+++.+.+.|.|++..+++...++.
T Consensus 1091 ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1091 LDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred HHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 55555554444433 34555555555555555555544322 24455555555555556665555555555554
Q ss_pred CCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----------------------CChhhHHHHHHHHHHcCChHHHH
Q 048578 260 CIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE-----------------------KNVCTWNSIIGGLAIHGCGEEAV 316 (519)
Q Consensus 260 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----------------------~~~~~~~~l~~~~~~~g~~~~a~ 316 (519)
...|.. -+.|+-+|++.+++.+.++++..--. .++.-|..+...+...|++..|.
T Consensus 1163 ~~E~~i--d~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1163 VREPYI--DSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred hcCccc--hHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 433322 23455555555555554444321100 14556777788888888888887
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 048578 317 KMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PM 395 (519)
Q Consensus 317 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~ 395 (519)
+.-++. .+..||..+-.+|...+.+.-|. +.. .++-....-..-++.-|-..|-+++.+.+++.. |+
T Consensus 1241 D~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCG-L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL 1308 (1666)
T KOG0985|consen 1241 DAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICG-LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL 1308 (1666)
T ss_pred HHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcC-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch
Confidence 665442 35668888888888776654442 211 122234455677899999999999999999887 65
Q ss_pred CC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHh-hC-C------CCCchHHHHHHHHHhcCCchHHHHH
Q 048578 396 EP-NAVLWGSLLTACASADDGANVELAEIAMERLIK-LE-P------FNDGNYVLMSNIYAAKAQWDDAGKM 458 (519)
Q Consensus 396 ~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~-~~-p------~~~~~~~~l~~~~~~~g~~~~A~~~ 458 (519)
+. ....|.-|.-.|.+ . ++++..+.++-... .+ | +....|..+...|.+-..|+.|.-.
T Consensus 1309 ERAHMgmfTELaiLYsk---y-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~t 1376 (1666)
T KOG0985|consen 1309 ERAHMGMFTELAILYSK---Y-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAALT 1376 (1666)
T ss_pred hHHHHHHHHHHHHHHHh---c-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 53 34456666666666 2 45666666555443 12 2 1456788888888888888877543
No 103
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.70 E-value=1.7e-05 Score=77.08 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=19.4
Q ss_pred CChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHH
Q 048578 79 SQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQL 118 (519)
Q Consensus 79 ~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 118 (519)
+++.+|+.+|-+-. .-...|..|....+|++|+.+
T Consensus 545 kkfk~ae~ifleqn-----~te~aigmy~~lhkwde~i~l 579 (1636)
T KOG3616|consen 545 KKFKEAEMIFLEQN-----ATEEAIGMYQELHKWDEAIAL 579 (1636)
T ss_pred hhhhHHHHHHHhcc-----cHHHHHHHHHHHHhHHHHHHH
Confidence 45777777775421 112345555555666666654
No 104
>PLN02789 farnesyltranstransferase
Probab=98.69 E-value=1.2e-05 Score=74.15 Aligned_cols=180 Identities=11% Similarity=0.006 Sum_probs=108.6
Q ss_pred HHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 048578 281 IEEALRVFKIVLEK---NVCTWNSIIGGLAIHGCG--EEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFY 355 (519)
Q Consensus 281 ~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~--~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 355 (519)
++++++.++++.+. +..+|+.....+.+.|+. ++++.+++++.+.. +-|..+|.....++...|+++++++.++
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45555555554332 333444443334444432 45666666666543 3345567666666777777777777777
Q ss_pred HcHHhcCCCCChhHHHHHHHHHHhc---CCh----HHHHHHHHhC-CCCC-CHHHHHHHHHHHccccC-CCCHHHHHHHH
Q 048578 356 NMRRDYKVEPNVKHYGCLVDLLCRA---RLL----DEAYEVIRNM-PMEP-NAVLWGSLLTACASADD-GANVELAEIAM 425 (519)
Q Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~~~---~~~----~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~-~~~~~~a~~~~ 425 (519)
++.+. -+.+...|+.....+.+. |.. +++++...++ ...| |...|+.+...+...++ .++..+|...+
T Consensus 167 ~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 167 QLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred HHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 77662 234555666555555443 222 3556665444 5566 44566666666655211 24456688888
Q ss_pred HHHHhhCCCCCchHHHHHHHHHhcC------------------CchHHHHHHHHHH
Q 048578 426 ERLIKLEPFNDGNYVLMSNIYAAKA------------------QWDDAGKMRRLMK 463 (519)
Q Consensus 426 ~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~ 463 (519)
.++.+.+|.++.+...|+.+|.... ..++|.++++.+.
T Consensus 245 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 245 LEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 8888888888899999999998642 2367888888884
No 105
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.68 E-value=5e-05 Score=73.91 Aligned_cols=343 Identities=14% Similarity=0.069 Sum_probs=202.1
Q ss_pred CCCChHHHHHHHhcCCCCCcc--hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHH
Q 048578 77 NSSQIAYAHLVFNQIINPSTF--AFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLV 154 (519)
Q Consensus 77 ~~~~~~~A~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ 154 (519)
..++|.+|+.+++.+...++. -|..+...|+..|+++.|.++|.+.- .++..+..|.+.|+.+++++..
T Consensus 744 ~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHH
Confidence 336777777777776543332 35666778888888888888886542 3566778888888888888888
Q ss_pred HHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 048578 155 VKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLV 234 (519)
Q Consensus 155 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 234 (519)
.+.-+.......|-+-..-+-+.|++.+|++++-.+..|+. .|..|-+.|..+..+++.++-.-. .-..|-.
T Consensus 815 ~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~ 886 (1636)
T KOG3616|consen 815 EECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHK 886 (1636)
T ss_pred HHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChh---hhhHHHH
Confidence 77754455566777777777888888888888888777764 367788888888888887654211 1223555
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh-----hHH---------
Q 048578 235 SVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVC-----TWN--------- 300 (519)
Q Consensus 235 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~--------- 300 (519)
.+..-+...|++..|+.-|-+... |.+-+++|...+-+++|.++-+.--..|.. .|.
T Consensus 887 ~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaav 957 (1636)
T KOG3616|consen 887 HFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAV 957 (1636)
T ss_pred HHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHH
Confidence 566667778888888776654433 556677788888888887776543222221 111
Q ss_pred ----------HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcC--C-----
Q 048578 301 ----------SIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYK--V----- 363 (519)
Q Consensus 301 ----------~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~----- 363 (519)
.-+...+..+-++-|.++-+-..+.. .|... ..+..-+...|+++.|.+.+-+..+-.. +
T Consensus 958 kllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~vh--lk~a~~ledegk~edaskhyveaiklntynitwcqa 1034 (1636)
T KOG3616|consen 958 KLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGEVH--LKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQA 1034 (1636)
T ss_pred HHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Cccch--hHHhhhhhhccchhhhhHhhHHHhhcccccchhhhc
Confidence 11122233444444444443333221 22222 2233345677888888877766655100 0
Q ss_pred CCChhHH---------HHHHHHHHhcCChHHHHHHHHhCCCCCCH--HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhC
Q 048578 364 EPNVKHY---------GCLVDLLCRARLLDEAYEVIRNMPMEPNA--VLWGSLLTACASADDGANVELAEIAMERLIKLE 432 (519)
Q Consensus 364 ~~~~~~~---------~~l~~~~~~~~~~~~A~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~ 432 (519)
.|+..-. ..-+.++.+.++|..|.++-+.- .|+. ..+..-.++... .|++.+|..++-++ ..
T Consensus 1035 vpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h--~~~~l~dv~tgqar~aie---e~d~~kae~fllra--nk 1107 (1636)
T KOG3616|consen 1035 VPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAH--CEDLLADVLTGQARGAIE---EGDFLKAEGFLLRA--NK 1107 (1636)
T ss_pred ccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhh--ChhhhHHHHhhhhhcccc---ccchhhhhhheeec--CC
Confidence 0110000 01223444555555555554443 1221 122222333444 67777777765432 22
Q ss_pred CCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 048578 433 PFNDGNYVLMSNIYAAKAQWDDAGKMRRL 461 (519)
Q Consensus 433 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (519)
|+ ..++.|...+.|.+|+++.+.
T Consensus 1108 p~------i~l~yf~e~~lw~dalri~kd 1130 (1636)
T KOG3616|consen 1108 PD------IALNYFIEAELWPDALRIAKD 1130 (1636)
T ss_pred Cc------hHHHHHHHhccChHHHHHHHh
Confidence 43 445667778888888876543
No 106
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=4.1e-06 Score=81.30 Aligned_cols=218 Identities=17% Similarity=0.106 Sum_probs=168.0
Q ss_pred CCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048578 261 IILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTA 340 (519)
Q Consensus 261 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 340 (519)
.+|-...-..+...+...|-...|..+|++ ...|...+.+|...|+..+|..+..+-.+ -+||...|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Er-----lemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFER-----LEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHh-----HHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 456666777888999999999999999995 46788899999999999999999988877 38899999999998
Q ss_pred HhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCH
Q 048578 341 CSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANV 418 (519)
Q Consensus 341 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~ 418 (519)
....--+++|.++++....+ .-..+.....+.+++.++.+.|+.- .+.| ...+|-.+..+..+ .+++
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALq---lek~ 535 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQ---LEKE 535 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHH---Hhhh
Confidence 88888889999988776552 1112222333478899999888875 5555 45577777777777 8899
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCCChhHH
Q 048578 419 ELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEI 498 (519)
Q Consensus 419 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (519)
+.|.+.|.....++|++...|+.+..+|.+.|+-.+|...+++..+.+..+ |-.+.+.+. -....+..+++
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~-----w~iWENyml----vsvdvge~eda 606 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH-----WQIWENYML----VSVDVGEFEDA 606 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC-----Ceeeechhh----hhhhcccHHHH
Confidence 999999999999999999999999999999999999999999988877554 433343222 22245566666
Q ss_pred HHHHHHH
Q 048578 499 YSMLEYV 505 (519)
Q Consensus 499 ~~~~~~~ 505 (519)
.+...++
T Consensus 607 ~~A~~rl 613 (777)
T KOG1128|consen 607 IKAYHRL 613 (777)
T ss_pred HHHHHHH
Confidence 6666665
No 107
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.66 E-value=2.6e-06 Score=80.49 Aligned_cols=248 Identities=11% Similarity=0.015 Sum_probs=184.1
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHH
Q 048578 203 NGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIE 282 (519)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 282 (519)
.-+.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|...+.+.++.. +.|..+.-.|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34678899999999999988875 3366788888888889898889999998888876 677888889999999999999
Q ss_pred HHHHHHhhcCCCCh-hhHHHHH---------HHHHHcCChHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 048578 283 EALRVFKIVLEKNV-CTWNSII---------GGLAIHGCGEEAVKMFWQM-QMSGIKPDDVTLIAVLTACSHAGLIEKGK 351 (519)
Q Consensus 283 ~a~~~~~~~~~~~~-~~~~~l~---------~~~~~~g~~~~a~~~~~~m-~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 351 (519)
+|...++.-+.... ..|.... ..+.....+....++|-++ ...+..+|......|.-.|.-.|++++|.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 99998876532110 0000000 1111122233444455444 45565577778888888899999999999
Q ss_pred HHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHccccCCCCHHHHHHHHHHHH
Q 048578 352 EIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAV-LWGSLLTACASADDGANVELAEIAMERLI 429 (519)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~~~~a~~~~~~~~ 429 (519)
+.|+.+.. --+-|...||.|.-.++...+.++|+..|.+. .++|+-+ +...|.-.|.. .|.+++|.+.|-.++
T Consensus 451 Dcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mN---lG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 451 DCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMN---LGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhh---hhhHHHHHHHHHHHH
Confidence 99999987 23446779999999999999999999999998 8888754 66667778999 999999999999988
Q ss_pred hhCCC----------CCchHHHHHHHHHhcCCchHHHH
Q 048578 430 KLEPF----------NDGNYVLMSNIYAAKAQWDDAGK 457 (519)
Q Consensus 430 ~~~p~----------~~~~~~~l~~~~~~~g~~~~A~~ 457 (519)
.+.+. +..+|..|=.++.-.++.|-+.+
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 76543 12366666666666666654444
No 108
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.66 E-value=0.00029 Score=66.52 Aligned_cols=418 Identities=12% Similarity=0.103 Sum_probs=231.2
Q ss_pred CCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHH
Q 048578 59 DNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN---PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYP 135 (519)
Q Consensus 59 ~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 135 (519)
|.|..+|+.|+.-+.. ..++++...++++.. .+...|..-|..-.+..+++....+|.+....-+ +...|.
T Consensus 17 P~di~sw~~lire~qt----~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~ 90 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQT----QPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWK 90 (656)
T ss_pred CccHHHHHHHHHHHcc----CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHH
Confidence 5678889998886654 589999999998854 3557788899999999999999999999887543 344555
Q ss_pred HHHHHHcCccc--------hHHHHHHHHHhCCCCC-chhHHHHHHHH---------HHhcCChHHHHHHHhcCCC-C---
Q 048578 136 ILLKACGDLRQ--------VKGVHSLVVKSKDFNS-VIHSLTRLITF---------YCNFGDVKSAQLLFDQMTE-K--- 193 (519)
Q Consensus 136 ~ll~~~~~~~~--------~~~~~~~~~~~~~~~~-~~~~~~~l~~~---------~~~~g~~~~A~~~~~~~~~-~--- 193 (519)
.-+.-..+.+. .-++++......++.+ +...|+..+.. |....+++...++++++.. |
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~n 170 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHN 170 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcccc
Confidence 44443322222 3344444443332444 23345544433 3444566777788887764 2
Q ss_pred ------chhHHHHHHHH-------HHHcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCChHH--HHHHHHHH
Q 048578 194 ------NVVTWTAMING-------HVKQKNYREGIDLFRKMRDS--GVEVNELTLVSVLSACANLGASEL--GKWVHEFV 256 (519)
Q Consensus 194 ------~~~~~~~li~~-------~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~--a~~~~~~~ 256 (519)
|-..|..=|.. --+...+-.|.++++++... |..-...+ .-..|-.++ ..+++...
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~W~n~ 243 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVELWKNW 243 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHHHHHH
Confidence 11222211111 11233455666666665431 21111000 000111111 11112111
Q ss_pred HH---c-CCC-cchh-HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHH-------HHHHHHcCC-------hHHHH
Q 048578 257 NK---N-CII-LNDK-LGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSI-------IGGLAIHGC-------GEEAV 316 (519)
Q Consensus 257 ~~---~-~~~-~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l-------~~~~~~~g~-------~~~a~ 316 (519)
.+ . ++. .+.. +-+.++-+| ++++..+- -.+..|.-- -+.+...|+ -+++.
T Consensus 244 I~wEksNpL~t~~~~~~~~Rv~yay------eQ~ll~l~----~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~ 313 (656)
T KOG1914|consen 244 IKWEKSNPLRTLDGTMLTRRVMYAY------EQCLLYLG----YHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAA 313 (656)
T ss_pred HHHHhcCCcccccccHHHHHHHHHH------HHHHHHHh----cCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHH
Confidence 11 1 111 0000 000111111 00110000 001111100 011222222 35566
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHh---ccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 048578 317 KMFWQMQMSGIKPDDVTLIAVLTACS---HAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM 393 (519)
Q Consensus 317 ~~~~~m~~~g~~p~~~~~~~l~~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 393 (519)
.+++..+..-..-+..+|..+...-- +-...+....+++++.......|+ .+|..+++.-.+..-++.|..+|.+.
T Consensus 314 ~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~ka 392 (656)
T KOG1914|consen 314 SIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKA 392 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHH
Confidence 66666554322334444444443211 112366677778887775555555 46778888888888999999999998
Q ss_pred ---CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 048578 394 ---PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVK 469 (519)
Q Consensus 394 ---~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 469 (519)
+..+ +....++++.-++ +++.+.|.++|+-.++..++++..-...+..+...|+-+.|..+|++....++.+
T Consensus 393 R~~~r~~hhVfVa~A~mEy~c----skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~ 468 (656)
T KOG1914|consen 393 REDKRTRHHVFVAAALMEYYC----SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA 468 (656)
T ss_pred hhccCCcchhhHHHHHHHHHh----cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh
Confidence 4445 6678888888877 4789999999999999999999999999999999999999999999999886665
Q ss_pred CCcccEEEECCEEEEEEeCCCCCCChhHHHHHHHHHHHHHH
Q 048578 470 NPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLR 510 (519)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (519)
+...-. +. .++.-...-++...++++-.+.....+
T Consensus 469 ~ks~~I--w~----r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 469 DKSKEI--WD----RMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred hhhHHH--HH----HHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 422110 01 112222334555666666555544433
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.65 E-value=1e-06 Score=71.28 Aligned_cols=122 Identities=11% Similarity=-0.026 Sum_probs=79.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 048578 317 KMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PM 395 (519)
Q Consensus 317 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~ 395 (519)
.++++..+ +.|+. +..+..++...|++++|...|+.+.. --+.+...|..+..++...|++++|...|++. .+
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444 23443 34455666777777777777777765 33445666777777777777777777777776 44
Q ss_pred CC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 048578 396 EP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYA 447 (519)
Q Consensus 396 ~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (519)
.| +...+..+..++.. .|+.++|...++++++..|+++..+...+.+..
T Consensus 88 ~p~~~~a~~~lg~~l~~---~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKM---MGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 45 44566666666666 777777777777777777777777766655544
No 110
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.62 E-value=3.9e-05 Score=75.54 Aligned_cols=378 Identities=13% Similarity=0.092 Sum_probs=220.8
Q ss_pred CCCCcchHHHHHH--HHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccc---hHHHHHHHHHhCC-------
Q 048578 92 INPSTFAFNTVIR--GYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQ---VKGVHSLVVKSKD------- 159 (519)
Q Consensus 92 ~~~~~~~~~~ll~--~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~~~~~~~~~~~------- 159 (519)
..=|..+-..++. -|..-|+.+.|.+-.+-++. ...|..+.+.|.+..+ ++-.+..|....+
T Consensus 722 e~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a 795 (1416)
T KOG3617|consen 722 ENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRA 795 (1416)
T ss_pred cccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHH
Confidence 4456666666664 56678999999888776654 4567888888877665 2222222211110
Q ss_pred -CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048578 160 -FNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLS 238 (519)
Q Consensus 160 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 238 (519)
-.++ ..-..+.-...+.|.+++|+.+|++.++ |..|=..|-..|.|++|.++-+.--. +. =..||.....
T Consensus 796 ~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DR--iH-Lr~Tyy~yA~ 866 (1416)
T KOG3617|consen 796 QQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDR--IH-LRNTYYNYAK 866 (1416)
T ss_pred HhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccc--ee-hhhhHHHHHH
Confidence 1221 2223333445678999999999998765 44566778889999999998654321 22 2245555566
Q ss_pred HHhccCChHHHHHHHHHHHH----------cC---------CCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhH
Q 048578 239 ACANLGASELGKWVHEFVNK----------NC---------IILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTW 299 (519)
Q Consensus 239 ~~~~~~~~~~a~~~~~~~~~----------~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 299 (519)
-+...+|.+.|.++|++... .. -..+...|.--...+-..|+.+.|+.+|... .-|
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A-----~D~ 941 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA-----KDY 941 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh-----hhh
Confidence 66677888888887776321 11 1123344444455555678888888888754 346
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCC----CChhHHHHHHH
Q 048578 300 NSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVE----PNVKHYGCLVD 375 (519)
Q Consensus 300 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~ 375 (519)
..++...|-.|+.++|-++-++ .-|......|.+.|...|++.+|..+|.+.+. +.-. ..-..-..|..
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa-fsnAIRlcKEnd~~d~L~n 1014 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQA-FSNAIRLCKENDMKDRLAN 1014 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhcCHHHHHHH
Confidence 6777777888999998887665 33667777889999999999999999987754 1100 00000011111
Q ss_pred HH--HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHH----------HHhhCCC-CCchHHHH
Q 048578 376 LL--CRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMER----------LIKLEPF-NDGNYVLM 442 (519)
Q Consensus 376 ~~--~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~----------~~~~~p~-~~~~~~~l 442 (519)
.. ....+.-.|...|++.|..- ...+..|-+ .|-+.+|.++.=+ +..++|. ||.....-
T Consensus 1015 lal~s~~~d~v~aArYyEe~g~~~-----~~AVmLYHk---AGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1015 LALMSGGSDLVSAARYYEELGGYA-----HKAVMLYHK---AGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred HHhhcCchhHHHHHHHHHHcchhh-----hHHHHHHHh---hcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence 11 12223444555565553221 112223444 4444444432111 1134444 67888888
Q ss_pred HHHHHhcCCchHHHHHHHHHHh----------CCCccCCcccEEEECCEEEEEEe-CCCCCCChhHHHHHHHHHHHHHHh
Q 048578 443 SNIYAAKAQWDDAGKMRRLMKE----------RNIVKNPGCSVIEINDVVHEFMV-GDGRHPCSEEIYSMLEYVAISLRE 511 (519)
Q Consensus 443 ~~~~~~~g~~~~A~~~~~~m~~----------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 511 (519)
++.+....++++|..++...++ +|++... .+.+.+. .....++.+.-.++++++.+..-.
T Consensus 1087 adFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vte---------e~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~q 1157 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTE---------EFAELMTPTKDDMPNEQERKQVLEQVAELCLQ 1157 (1416)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH---------HHHHhcCcCcCCCccHHHHHHHHHHHHHHHHh
Confidence 8889999999999888766543 3332211 1111221 112445566666777777665544
Q ss_pred cc
Q 048578 512 EC 513 (519)
Q Consensus 512 ~~ 513 (519)
.|
T Consensus 1158 QG 1159 (1416)
T KOG3617|consen 1158 QG 1159 (1416)
T ss_pred cc
Confidence 44
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.61 E-value=6.1e-06 Score=70.54 Aligned_cols=160 Identities=12% Similarity=0.109 Sum_probs=126.6
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHH
Q 048578 295 NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLV 374 (519)
Q Consensus 295 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 374 (519)
|... ..+-..+...|+-+....+....... -.-|.......+....+.|++..|...|.+... .-++|...|+.+.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lg 141 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLG 141 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHH
Confidence 3344 55666777788888888887775532 133444566688888899999999999999987 6788899999999
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCc
Q 048578 375 DLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQW 452 (519)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 452 (519)
-+|.+.|+.++|..-|.+. .+.| +....+.+...+.- .|+.+.|..++.......+.+..+-..++.+....|++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L---~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL---RGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH---cCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCCh
Confidence 9999999999998888877 5555 34466777777777 88999999999998888888899999999999999999
Q ss_pred hHHHHHHHH
Q 048578 453 DDAGKMRRL 461 (519)
Q Consensus 453 ~~A~~~~~~ 461 (519)
++|..+...
T Consensus 219 ~~A~~i~~~ 227 (257)
T COG5010 219 REAEDIAVQ 227 (257)
T ss_pred HHHHhhccc
Confidence 999887644
No 112
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.61 E-value=1e-06 Score=71.35 Aligned_cols=108 Identities=8% Similarity=-0.109 Sum_probs=92.0
Q ss_pred HHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHH
Q 048578 352 EIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLI 429 (519)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~ 429 (519)
..|++..+ +.|+ .+..+...+...|++++|...|+.. .+.| +...+..+..++.. .|++++|...|+++.
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~---~g~~~~A~~~y~~Al 85 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM---LKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH---HhhHHHHHHHHHHHH
Confidence 44555544 3344 4666788999999999999999998 6666 56678888888999 999999999999999
Q ss_pred hhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 430 KLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 430 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
+.+|.++..+..++.++...|++++|...|++..+...
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999877554
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.58 E-value=8.9e-06 Score=79.04 Aligned_cols=216 Identities=12% Similarity=0.115 Sum_probs=177.6
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048578 160 FNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSA 239 (519)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 239 (519)
++|-...-..+...+...|-..+|..+|+++ ..|..+|.+|...|+..+|..+..+..+. +||+..|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhh
Confidence 4555666677888999999999999999976 47888999999999999999998888773 7899999999988
Q ss_pred HhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHH
Q 048578 240 CANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK---NVCTWNSIIGGLAIHGCGEEAV 316 (519)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~ 316 (519)
..+..-+++|.++.+..... .-..+.......++++++.+.|+.-.+- -..+|.....+..+.+++..|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 88777788888877665443 1122223334578999999999876554 3467888888889999999999
Q ss_pred HHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 048578 317 KMFWQMQMSGIKPDDV-TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM 393 (519)
Q Consensus 317 ~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 393 (519)
+.|..-.. ..||.. .|+.+-.+|.+.|+-.+|...+.+..+ ++ ..+...|...+-...+.|.+++|++.+.++
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99999876 467665 899999999999999999999999998 55 566778888889999999999999999887
No 114
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.57 E-value=0.0002 Score=77.79 Aligned_cols=291 Identities=12% Similarity=0.009 Sum_probs=185.9
Q ss_pred HHHHhcCChHHHHHHHhcCCC----CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCC--C----CCCH--HHHHHHHHH
Q 048578 172 TFYCNFGDVKSAQLLFDQMTE----KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSG--V----EVNE--LTLVSVLSA 239 (519)
Q Consensus 172 ~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~----~~~~--~~~~~ll~~ 239 (519)
......|+++.+..+++.+.. .+..........+...|+++++...+......- . .+.. .....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 344556778887787777642 222233344555678899999999988775431 0 1111 112223344
Q ss_pred HhccCChHHHHHHHHHHHHcCCCcc----hhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------CC--hhhHHHHHHHH
Q 048578 240 CANLGASELGKWVHEFVNKNCIILN----DKLGAALTDMYAKCGYIEEALRVFKIVLE-------KN--VCTWNSIIGGL 306 (519)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~--~~~~~~l~~~~ 306 (519)
+...|+++.|...++.........+ ....+.+...+...|++++|...+.+... +. ..+...+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 5678999999999998876321111 12445667778889999999999887743 11 12445566778
Q ss_pred HHcCChHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcC-CCC--ChhHHHHHHHH
Q 048578 307 AIHGCGEEAVKMFWQMQM----SGIK--P-DDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYK-VEP--NVKHYGCLVDL 376 (519)
Q Consensus 307 ~~~g~~~~a~~~~~~m~~----~g~~--p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~--~~~~~~~l~~~ 376 (519)
...|++++|...+++... .|.. + ....+..+...+...|++++|...+.+...... ..+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 889999999999888654 2211 1 223445566667788999999999888755211 112 23445556778
Q ss_pred HHhcCChHHHHHHHHhC----CCCCCHHHHH-----HHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCch----HHHHH
Q 048578 377 LCRARLLDEAYEVIRNM----PMEPNAVLWG-----SLLTACASADDGANVELAEIAMERLIKLEPFNDGN----YVLMS 443 (519)
Q Consensus 377 ~~~~~~~~~A~~~~~~~----~~~p~~~~~~-----~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~----~~~l~ 443 (519)
+...|+.++|.+.+++. ........+. ..+..+.. .|+.+.|...+.......+..... +..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQM---TGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHH---CCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence 88999999999888776 1111111111 11233445 788999999987765433222211 45788
Q ss_pred HHHHhcCCchHHHHHHHHHHhC
Q 048578 444 NIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
.++...|++++|...+++....
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8899999999999999988654
No 115
>PF12854 PPR_1: PPR repeat
Probab=98.56 E-value=1.3e-07 Score=54.49 Aligned_cols=32 Identities=41% Similarity=0.741 Sum_probs=22.6
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 048578 362 KVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM 393 (519)
Q Consensus 362 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 393 (519)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777665
No 116
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.56 E-value=0.00083 Score=67.38 Aligned_cols=393 Identities=14% Similarity=0.106 Sum_probs=223.4
Q ss_pred hhHHHHHHHHHhhcCCCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHH
Q 048578 63 ISDTQLAKLIESLVNSSQIAYAHLVFNQII---NPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLK 139 (519)
Q Consensus 63 ~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 139 (519)
..|...++++... +.|+.++|..+++... ..|..+...+-.+|...++.++|..+|+..... -|+......+..
T Consensus 42 ~~~a~vLkaLsl~-r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFm 118 (932)
T KOG2053|consen 42 ALYAKVLKALSLF-RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFM 118 (932)
T ss_pred cHHHHHHHHHHHH-HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHH
Confidence 3455556655432 3399999998888762 347778888999999999999999999998874 477777777888
Q ss_pred HHcCccchHHHHHHHHH-hCCCCCchhHHHHHHHHHHhcCC----------hHHHHHHHhcCCCCc--h---hHHHHHHH
Q 048578 140 ACGDLRQVKGVHSLVVK-SKDFNSVIHSLTRLITFYCNFGD----------VKSAQLLFDQMTEKN--V---VTWTAMIN 203 (519)
Q Consensus 140 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~--~---~~~~~li~ 203 (519)
++.+.+...+..+.-.+ ....+-+...+-++++.+...-. ..-|.+.++.+.+.+ . .-...-..
T Consensus 119 ayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~ 198 (932)
T KOG2053|consen 119 AYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLL 198 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHH
Confidence 88888874333333222 11245566666677776655422 233555555554422 1 11122233
Q ss_pred HHHHcCChhHHHHHHH-HHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHH------
Q 048578 204 GHVKQKNYREGIDLFR-KMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYA------ 276 (519)
Q Consensus 204 ~~~~~~~~~~a~~~~~-~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~------ 276 (519)
.+-..|++++|+.++. ..-+.-...+...-+.-+..+...++|.+..++-.++...|.. | |...++.+.
T Consensus 199 iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D-d---y~~~~~sv~klLe~~ 274 (932)
T KOG2053|consen 199 ILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND-D---YKIYTDSVFKLLELL 274 (932)
T ss_pred HHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-c---hHHHHHHHHHHHHhc
Confidence 4557788889988883 3333333334455556677778888888888888888887632 2 332222211
Q ss_pred ----------hcCCHHHHHHHHhhcCCC-ChhhHHHHHHHHH---HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 048578 277 ----------KCGYIEEALRVFKIVLEK-NVCTWNSIIGGLA---IHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACS 342 (519)
Q Consensus 277 ----------~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~---~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 342 (519)
..+..+...+...+.... .-..|-+-+.+.. .-|+.+++...|-+- -|-.| .+..=+..|.
T Consensus 275 ~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k--fg~kp---cc~~Dl~~yl 349 (932)
T KOG2053|consen 275 NKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK--FGDKP---CCAIDLNHYL 349 (932)
T ss_pred ccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH--hCCCc---HhHhhHHHhh
Confidence 122333333333333222 1122333333333 336666665554332 22222 1111122222
Q ss_pred ccCcHHHHHHHHHHcHHhcCCCCChh-------HHHHHHHHHHhcCC-----hHHHHHHHHhC------------CCCCC
Q 048578 343 HAGLIEKGKEIFYNMRRDYKVEPNVK-------HYGCLVDLLCRARL-----LDEAYEVIRNM------------PMEPN 398 (519)
Q Consensus 343 ~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~-----~~~A~~~~~~~------------~~~p~ 398 (519)
..=..+.-..++...... .++.. -+...+....-.|. -+....++.+. ++-|+
T Consensus 350 ~~l~~~q~~~l~~~l~~~---~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~T 426 (932)
T KOG2053|consen 350 GHLNIDQLKSLMSKLVLA---DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPT 426 (932)
T ss_pred ccCCHHHHHHHHHHhhcc---CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcccccccccccc
Confidence 222222223333333221 11111 01112222222221 12222222221 12233
Q ss_pred H---------HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 048578 399 A---------VLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVK 469 (519)
Q Consensus 399 ~---------~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 469 (519)
. .+.+.|+..+.+.++.+.+-+|+-+++......|.|..+-..++.+|.-.|-+..|.++++.+--++|..
T Consensus 427 E~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~ 506 (932)
T KOG2053|consen 427 EYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQT 506 (932)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhh
Confidence 2 2456788889997777778889999999999999999999999999999999999999999987777765
Q ss_pred C
Q 048578 470 N 470 (519)
Q Consensus 470 ~ 470 (519)
|
T Consensus 507 D 507 (932)
T KOG2053|consen 507 D 507 (932)
T ss_pred c
Confidence 4
No 117
>PF12854 PPR_1: PPR repeat
Probab=98.55 E-value=1.2e-07 Score=54.62 Aligned_cols=34 Identities=29% Similarity=0.534 Sum_probs=29.1
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcH
Q 048578 325 SGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMR 358 (519)
Q Consensus 325 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 358 (519)
+|+.||..||+.||.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4788888999999999999999999998888873
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.55 E-value=1.2e-05 Score=69.01 Aligned_cols=154 Identities=9% Similarity=0.031 Sum_probs=112.8
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 048578 272 TDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGK 351 (519)
Q Consensus 272 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 351 (519)
+..|...|+++.+....+.+..+. . .+...++.+++...+++..+.. +.|...|..+...|...|+++.|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777777777655544332221 0 1112566677887888777654 566778999999999999999999
Q ss_pred HHHHHcHHhcCCCCChhHHHHHHHHH-HhcCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHH
Q 048578 352 EIFYNMRRDYKVEPNVKHYGCLVDLL-CRARL--LDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAME 426 (519)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~ 426 (519)
..|++..+ -.+.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+.. .|++++|...++
T Consensus 94 ~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~---~g~~~~Ai~~~~ 168 (198)
T PRK10370 94 LAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFM---QADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH---cCCHHHHHHHHH
Confidence 99999987 3345677888888864 67777 59999999998 6667 45567777777888 999999999999
Q ss_pred HHHhhCCCCCchH
Q 048578 427 RLIKLEPFNDGNY 439 (519)
Q Consensus 427 ~~~~~~p~~~~~~ 439 (519)
++++..|.+..-+
T Consensus 169 ~aL~l~~~~~~r~ 181 (198)
T PRK10370 169 KVLDLNSPRVNRT 181 (198)
T ss_pred HHHhhCCCCccHH
Confidence 9999997755433
No 119
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.54 E-value=2.6e-05 Score=81.04 Aligned_cols=193 Identities=14% Similarity=0.177 Sum_probs=109.6
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCCCH---HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHH
Q 048578 195 VVTWTAMINGHVKQKNYREGIDLFRKMRDS-GVEVNE---LTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAA 270 (519)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 270 (519)
...|-..|......++.++|.+++++.+.. +++-.. ..|.++++.-...|.-+...++|+++.+.. ..-.+|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHH
Confidence 346777777777888888888888777654 222111 245555555555566666667777666643 22334555
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--H-HHHHHHHHHHhcc
Q 048578 271 LTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPD--D-VTLIAVLTACSHA 344 (519)
Q Consensus 271 l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~--~-~~~~~l~~~~~~~ 344 (519)
|...|.+.+.+++|.++|+.|.+ .....|...+..+.++++-+.|..++.+..+. -|. . ......+..-.+.
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhc
Confidence 66666666666666666666644 24455666666666666666666666655542 222 1 1233333344455
Q ss_pred CcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 048578 345 GLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM 393 (519)
Q Consensus 345 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 393 (519)
|+.+++..+|+.... ..+.-...|+.+++.-.+.|+.+.+..+|++.
T Consensus 1614 GDaeRGRtlfEgll~--ayPKRtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLS--AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred CCchhhHHHHHHHHh--hCccchhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 666666666666555 23334455666666666666666666666555
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.54 E-value=2.4e-05 Score=80.39 Aligned_cols=233 Identities=10% Similarity=0.028 Sum_probs=135.2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCC--Cch-hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048578 163 VIHSLTRLITFYCNFGDVKSAQLLFDQMTE--KNV-VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSA 239 (519)
Q Consensus 163 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 239 (519)
+...+..|+..|...+++++|.++.+...+ |+. ..|..+...+.+.++.+++..+ .++..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhh
Confidence 466777788888888888888888876554 333 3344444466666665555444 22233
Q ss_pred HhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHH
Q 048578 240 CANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAV 316 (519)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~ 316 (519)
.....++..+..+...+... ..+...+..+..+|-+.|+.++|..+++++.+ .|+.+.|.+...|... +.++|.
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 33333444444444444443 23444566677777777777777777777654 2556667777777766 777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 048578 317 KMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPME 396 (519)
Q Consensus 317 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 396 (519)
+++.+.... +...+++..+.++|.++.. ..+.+...+..+.+.....- +..
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~------------~~~ 220 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHR------------EFT 220 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhh------------ccc
Confidence 777666542 4455566666777777665 22233333322222222111 111
Q ss_pred CCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 048578 397 PNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYA 447 (519)
Q Consensus 397 p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (519)
--..++..+...|.. .++++++..+++.+++.+|.|-.+...++..|.
T Consensus 221 ~~~~~~~~l~~~y~~---~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKA---LEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhh---hhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 122333444445555 667777777777777777777777777777766
No 121
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=0.00011 Score=63.09 Aligned_cols=175 Identities=18% Similarity=0.088 Sum_probs=93.9
Q ss_pred HHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 048578 251 WVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPD 330 (519)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 330 (519)
.+.+.+.......+......-...|+..|++++|++..... .+......=+..+.+..+++-|.+.+++|.+ --+
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---ide 168 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG--ENLEAAALNVQILLKMHRFDLAEKELKKMQQ---IDE 168 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cch
Confidence 33344444333333333333445566667777777666652 2233333333445566667777777777764 224
Q ss_pred HHHHHHHHHHHhc----cCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHH
Q 048578 331 DVTLIAVLTACSH----AGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM--PMEPNAVLWGS 404 (519)
Q Consensus 331 ~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~p~~~~~~~ 404 (519)
..|.+.|..++.+ .+....|.-+|+++.+ ..+|+..+.+-...++...|++++|..++++. ....+..+...
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 4566655555443 3456666777777765 45566666666666666667777776666666 22224444444
Q ss_pred HHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 405 LLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 405 ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
++...... ..+.+...+.+.++....|.
T Consensus 247 liv~a~~~--Gkd~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 247 LIVLALHL--GKDAEVTERNLSQLKLSHPE 274 (299)
T ss_pred HHHHHHHh--CCChHHHHHHHHHHHhcCCc
Confidence 44443330 23344455555665555555
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.53 E-value=1.1e-05 Score=82.05 Aligned_cols=160 Identities=8% Similarity=-0.033 Sum_probs=107.7
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHH
Q 048578 295 NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDV-TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCL 373 (519)
Q Consensus 295 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 373 (519)
++..+..|.....+.|.+++|+.+++...+ +.|+.. ....++.++.+.+++++|...++.... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 466777777777788888888888888776 356654 667777778888888888888887776 344455666777
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 048578 374 VDLLCRARLLDEAYEVIRNM-PMEPN-AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQ 451 (519)
Q Consensus 374 ~~~~~~~~~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (519)
..++.+.|++++|.++|++. .-.|+ ..++..+..++.. .|+.++|...|++++....+-...|+.++ ++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~---~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~ 231 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTR---RGALWRARDVLQAGLDAIGDGARKLTRRL------VD 231 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhhCcchHHHHHHH------HH
Confidence 77788888888888888877 33443 5567777777777 78888888888888776533234433332 23
Q ss_pred chHHHHHHHHHHhCCC
Q 048578 452 WDDAGKMRRLMKERNI 467 (519)
Q Consensus 452 ~~~A~~~~~~m~~~~~ 467 (519)
+..-...++++.-.+.
T Consensus 232 ~~~~~~~~~~~~~~~~ 247 (694)
T PRK15179 232 LNADLAALRRLGVEGD 247 (694)
T ss_pred HHHHHHHHHHcCcccc
Confidence 3334445555544333
No 123
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.49 E-value=3.8e-05 Score=77.27 Aligned_cols=372 Identities=11% Similarity=0.028 Sum_probs=183.9
Q ss_pred ChHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHH
Q 048578 80 QIAYAHLVFNQIINPST---FAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVK 156 (519)
Q Consensus 80 ~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~ 156 (519)
+.+.|...|=+..+.|+ ..|..|...|...-+...|.+.|.+..+.+ ..|..........++...+.+.++.....
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 45555555544433222 346666666665556666666666665532 12333455555566666665555555443
Q ss_pred hCCCCCch---hHHHHHHHHHHhcCChHHHHHHHhcCCC---CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH
Q 048578 157 SKDFNSVI---HSLTRLITFYCNFGDVKSAQLLFDQMTE---KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNE 230 (519)
Q Consensus 157 ~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 230 (519)
.+...|-. ..|....-.|.+.++...|..-|+...+ .|...|..+..+|...|++..|.++|.+.... +|+.
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s 629 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS 629 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh
Confidence 33222211 1122233345566777777777766655 34456677777777777777777777766553 3432
Q ss_pred HHHHHHH--HHHhccCChHHHHHHHHHHHHcC------CCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---------
Q 048578 231 LTLVSVL--SACANLGASELGKWVHEFVNKNC------IILNDKLGAALTDMYAKCGYIEEALRVFKIVLE--------- 293 (519)
Q Consensus 231 ~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------- 293 (519)
+|...- ..-+..|.+.++...++.+.... ...-..++-.+...+.-.|-..+|.+.+++-.+
T Consensus 630 -~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 630 -KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred -HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 222221 22455677777777666665421 111112222222222233333333333333211
Q ss_pred --CChhhHHHHHHHHHH---cC-C-h-HHHHHHHH-HHHHCCCC--------------------CCHHHHHHHHHHHhc-
Q 048578 294 --KNVCTWNSIIGGLAI---HG-C-G-EEAVKMFW-QMQMSGIK--------------------PDDVTLIAVLTACSH- 343 (519)
Q Consensus 294 --~~~~~~~~l~~~~~~---~g-~-~-~~a~~~~~-~m~~~g~~--------------------p~~~~~~~l~~~~~~- 343 (519)
.+...|-.+-.++.- .. + + .....++. +....+.- .+..+|..++..|.+
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~ 788 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRY 788 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHH
Confidence 111122222111110 00 0 0 00001111 11111111 122233333333322
Q ss_pred ---c----CcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccC
Q 048578 344 ---A----GLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADD 414 (519)
Q Consensus 344 ---~----g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~ 414 (519)
. .+...|+..+.+..+ -..-+..+|+.|.-. ...|++.-|..-|-+- -..| ...+|..+.-.+..
T Consensus 789 f~~l~et~~~~~~Ai~c~KkaV~--L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~--- 862 (1238)
T KOG1127|consen 789 FLLLGETMKDACTAIRCCKKAVS--LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLE--- 862 (1238)
T ss_pred HHHcCCcchhHHHHHHHHHHHHH--HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEe---
Confidence 1 122345555555544 122344555555444 4445555555544443 2223 45566666666777
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 048578 415 GANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRL 461 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (519)
..+++.|...|.+...++|.|...|...+......|+.-++..+|..
T Consensus 863 n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred cccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 77888888888888888888888888777777788887777777766
No 124
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.47 E-value=1.8e-05 Score=70.61 Aligned_cols=181 Identities=13% Similarity=0.002 Sum_probs=122.2
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcc---hhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---Chh---h
Q 048578 228 VNELTLVSVLSACANLGASELGKWVHEFVNKNCIILN---DKLGAALTDMYAKCGYIEEALRVFKIVLEK---NVC---T 298 (519)
Q Consensus 228 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~---~ 298 (519)
.....+..+...+...|+++.|...++.+.+.. +.+ ...+..+..++...|++++|...++++.+. +.. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 355677778888999999999999999998865 222 246677889999999999999999998653 222 3
Q ss_pred HHHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhH
Q 048578 299 WNSIIGGLAIH--------GCGEEAVKMFWQMQMSGIKPDDV-TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKH 369 (519)
Q Consensus 299 ~~~l~~~~~~~--------g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 369 (519)
+..+..++... |++++|.+.++++... .|+.. ....+..... . .... . ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~-~--------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRL-A--------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHH-H--------HH
Confidence 55555556554 7889999999999875 45443 2222211100 0 0000 0 11
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCC
Q 048578 370 YGCLVDLLCRARLLDEAYEVIRNM-PM---EP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEP 433 (519)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~-~~---~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p 433 (519)
...+...|.+.|++++|...+++. .. .| ....+..+..++.. .|++++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~---lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLK---LGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCC
Confidence 124566778888888888888777 22 23 24567777777888 8888888888877766554
No 125
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=4.2e-05 Score=65.00 Aligned_cols=172 Identities=15% Similarity=0.107 Sum_probs=120.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCC--Ch-hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 048578 268 GAALTDMYAKCGYIEEALRVFKIVLEK--NV-CTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHA 344 (519)
Q Consensus 268 ~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 344 (519)
+..++-+....|+.+.|..+++.+..+ +. ..-..-.--+-..|++++|+++++.+.+.+ +-|..++--=+...-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 444455555566666666666655332 11 111111122345688899999999988775 44555666556566667
Q ss_pred CcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHH
Q 048578 345 GLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAE 422 (519)
Q Consensus 345 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~ 422 (519)
|+--+|++-+....+ .+.-|...|.-+...|...|++++|.-.++++ -+.| +...+..+...+...|...+++.+.
T Consensus 134 GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 777788888888888 57789999999999999999999999999998 5566 4556677777655544477899999
Q ss_pred HHHHHHHhhCCCCCchHHHH
Q 048578 423 IAMERLIKLEPFNDGNYVLM 442 (519)
Q Consensus 423 ~~~~~~~~~~p~~~~~~~~l 442 (519)
++|.+++++.|.+.+.+..+
T Consensus 212 kyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHHhChHhHHHHHHH
Confidence 99999999999665555433
No 126
>PLN02789 farnesyltranstransferase
Probab=98.40 E-value=0.00037 Score=64.38 Aligned_cols=224 Identities=13% Similarity=0.037 Sum_probs=112.2
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCC--
Q 048578 205 HVKQKNYREGIDLFRKMRDSGVEVNE-LTLVSVLSACANLG-ASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGY-- 280 (519)
Q Consensus 205 ~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-- 280 (519)
+...++.++|+.++.++++. .|+. .+|+.-..++...| +++++...++.+.+.+ +.+..+++.-..++.+.|+
T Consensus 47 l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 47 YASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 33444555555555555543 2222 23333333333334 3455555555555543 2333334433333333343
Q ss_pred HHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---Cc----HHHH
Q 048578 281 IEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHA---GL----IEKG 350 (519)
Q Consensus 281 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~---g~----~~~a 350 (519)
.+++..+++++.+ .|..+|+...-.+...|+++++++.++++++.+ .-|...|+.....+.+. |. .++.
T Consensus 124 ~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 124 ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHH
Confidence 2445555555543 345566666666666677777777777776654 22334444444443332 21 2345
Q ss_pred HHHHHHcHHhcCCCCChhHHHHHHHHHHhc----CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccC----------
Q 048578 351 KEIFYNMRRDYKVEPNVKHYGCLVDLLCRA----RLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADD---------- 414 (519)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~---------- 414 (519)
..+..++.. ..+-+...|+.+...+... ++..+|.+.+.+. ...| +......|+..|....+
T Consensus 203 l~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~ 280 (320)
T PLN02789 203 LKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVD 280 (320)
T ss_pred HHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhh
Confidence 555545544 2344556666666666652 3345566666655 3334 44456666666554110
Q ss_pred -----CCCHHHHHHHHHHHHhhCCC
Q 048578 415 -----GANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 415 -----~~~~~~a~~~~~~~~~~~p~ 434 (519)
....++|.++++.+.+.+|-
T Consensus 281 ~~~~~~~~~~~a~~~~~~l~~~d~i 305 (320)
T PLN02789 281 TLAEELSDSTLAQAVCSELEVADPM 305 (320)
T ss_pred ccccccccHHHHHHHHHHHHhhCcH
Confidence 11346777777777666665
No 127
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.40 E-value=7.8e-06 Score=65.10 Aligned_cols=96 Identities=13% Similarity=0.013 Sum_probs=82.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 048578 366 NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAV-LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMS 443 (519)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (519)
+......+...+...|++++|..+|+-. -+.|... -|..|.-.+.. .|++++|+..|.++..++|++++.+..++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~---~g~~~~AI~aY~~A~~L~~ddp~~~~~ag 110 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA---QKHWGEAIYAYGRAAQIKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH---HhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 4455566777788999999999999998 6677554 55666666777 99999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHh
Q 048578 444 NIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m~~ 464 (519)
.++...|+.+.|.+.|+....
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999998865
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.39 E-value=6.5e-05 Score=70.04 Aligned_cols=126 Identities=18% Similarity=0.139 Sum_probs=100.6
Q ss_pred HHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHccccCC
Q 048578 338 LTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN-AVLWGSLLTACASADDG 415 (519)
Q Consensus 338 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~ 415 (519)
...+...|+++.|+..++.+.+ ..+.|+..+....+.+.+.++.++|.+.++++ ...|+ ......+..++.. .
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~---~ 387 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLK---G 387 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh---c
Confidence 3345667888999999988887 45566777777888899999999999999888 66776 4566677778888 8
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 048578 416 ANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (519)
|++.+|+.+++.....+|+|+..|..|+.+|...|+..+|.....+.......
T Consensus 388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~ 440 (484)
T COG4783 388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGR 440 (484)
T ss_pred CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCC
Confidence 88999999999998889999999999999998888888888777666544433
No 129
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.37 E-value=3.7e-05 Score=65.86 Aligned_cols=135 Identities=14% Similarity=0.090 Sum_probs=113.5
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHH
Q 048578 328 KPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM--PMEPNAVLWGSL 405 (519)
Q Consensus 328 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~p~~~~~~~l 405 (519)
.|+......+-..+...|+-+....+...... ..+.+......++....+.|++.+|...+.+. .-++|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 55444336677778888888888888777654 34455566677999999999999999999998 434567788888
Q ss_pred HHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 406 LTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 406 l~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
.-+|.+ .|+++.|...|.++.++.|.++..++.++..|.-.|+++.|..++......+.
T Consensus 141 gaaldq---~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 141 GAALDQ---LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHH---ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 888999 99999999999999999999999999999999999999999999999876655
No 130
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.00039 Score=59.76 Aligned_cols=169 Identities=13% Similarity=0.058 Sum_probs=109.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-
Q 048578 216 DLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK- 294 (519)
Q Consensus 216 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 294 (519)
++.+.+.......+......-...|+..++++.|.+...... +......=+..+.+..+.+-|...+++|.+-
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id 167 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID 167 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 344444444333333333333445777888888877765521 2223333345566777888888888888764
Q ss_pred ChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHH
Q 048578 295 NVCTWNSIIGGLAI----HGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHY 370 (519)
Q Consensus 295 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 370 (519)
+..+.+.|..++.+ .+.+..|.-+|++|-++ ..|+..+.+....++...|++++|..++++... .-..++.+.
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~--kd~~dpetL 244 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD--KDAKDPETL 244 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh--ccCCCHHHH
Confidence 44556666666654 35678899999998754 588888999999999999999999999999887 344456666
Q ss_pred HHHHHHHHhcCChHHH-HHHHHhC
Q 048578 371 GCLVDLLCRARLLDEA-YEVIRNM 393 (519)
Q Consensus 371 ~~l~~~~~~~~~~~~A-~~~~~~~ 393 (519)
..++-+-...|...++ .+.+.+.
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHH
Confidence 6666665556655443 3344444
No 131
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.30 E-value=1.1e-05 Score=65.01 Aligned_cols=96 Identities=22% Similarity=0.191 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 048578 368 KHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNI 445 (519)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (519)
.....+...+...|++++|.+.++.. ...| +...+..+...+.. .|++++|...++++++.+|.++..+..++.+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 94 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM---LKEYEEAIDAYALAAALDPDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 34445556666666666666666665 3334 34455555555666 6667777777777777777767777777777
Q ss_pred HHhcCCchHHHHHHHHHHhCC
Q 048578 446 YAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 446 ~~~~g~~~~A~~~~~~m~~~~ 466 (519)
|...|++++|...+++..+..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHhc
Confidence 777777777777776665543
No 132
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.29 E-value=0.00016 Score=73.63 Aligned_cols=143 Identities=12% Similarity=0.065 Sum_probs=118.7
Q ss_pred CCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 048578 260 CIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE--K-NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIA 336 (519)
Q Consensus 260 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 336 (519)
..+.+...+..|.....+.|.+++|+.+++.+.+ | +......++..+.+.+++++|+..+++..... +-+......
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 3566788999999999999999999999999865 3 55678888999999999999999999998753 334457788
Q ss_pred HHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHH
Q 048578 337 VLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM--PMEPNAVLWGSL 405 (519)
Q Consensus 337 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~p~~~~~~~l 405 (519)
+..++.+.|++++|..+|+++.. ..+-+..++..+..++...|+.++|...|++. ...|-...|+..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 88899999999999999999997 34445788999999999999999999999998 333444454444
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.27 E-value=4.3e-05 Score=71.87 Aligned_cols=131 Identities=13% Similarity=0.055 Sum_probs=105.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 048578 264 NDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSH 343 (519)
Q Consensus 264 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 343 (519)
+......|+..+...++++.|+.+|+++.+.++.....++..+...++-.+|.+++++..... +-+......-...|.+
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 344556677777788899999999999988888888888888888888889999999888642 3455566667777889
Q ss_pred cCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 048578 344 AGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEP 397 (519)
Q Consensus 344 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p 397 (519)
.++++.|..+.+++.+ -.+-+-.+|..|..+|...|++++|+-.++.++..|
T Consensus 247 k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 247 KKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred cCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999999987 344456699999999999999999999999885433
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.27 E-value=0.0003 Score=72.66 Aligned_cols=233 Identities=8% Similarity=-0.016 Sum_probs=125.0
Q ss_pred CchhHHHHHHHHHhhcCCCChHHHHHHHhcCCC--CC-cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHH
Q 048578 61 RTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN--PS-TFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPIL 137 (519)
Q Consensus 61 ~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 137 (519)
+...+..|+..|... +++++|.++.+.... |+ ...|-.+...+.+.++...+..+ .+.. ..+...-|..+
T Consensus 30 n~~a~~~Li~~~~~~---~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~--~~~~~~~~~~v 102 (906)
T PRK14720 30 KFKELDDLIDAYKSE---NLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID--SFSQNLKWAIV 102 (906)
T ss_pred hHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh--hcccccchhHH
Confidence 455667777777666 788888777775532 33 33344444466666666666555 3322 22222222222
Q ss_pred HHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CchhHHHHHHHHHHHcCChhHH
Q 048578 138 LKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE---KNVVTWTAMINGHVKQKNYREG 214 (519)
Q Consensus 138 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a 214 (519)
-..|. ..+....+...+..+..+|-+.|+.++|..+++++.+ .|+.+.|.+...|... ++++|
T Consensus 103 e~~~~-------------~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 103 EHICD-------------KILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred HHHHH-------------HHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 22211 1111333444666677777777777777777777765 3556667777777777 77777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 048578 215 IDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK 294 (519)
Q Consensus 215 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 294 (519)
.+++.+.... +...+++..+..+|..+.... +.+...+..+.+.....-. ..+
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~~~-----------~~~ 221 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGHRE-----------FTR 221 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhhhc-----------cch
Confidence 7777666543 334445555666666655543 2222222222111111100 111
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 048578 295 NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACS 342 (519)
Q Consensus 295 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 342 (519)
-+.++..+-..|-..++|+++..+++.+.+.. +-|.....-++.+|.
T Consensus 222 ~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 222 LVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 23344555566667777777777777777643 234445666665554
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.25 E-value=2.5e-05 Score=73.45 Aligned_cols=123 Identities=15% Similarity=0.124 Sum_probs=97.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHc
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACA 410 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 410 (519)
....|+..+...++++.|..+|+++.+. .|+ ....+++.+...++-.+|.+++.+. ...| +...+..-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445666677778888888888888773 244 4445778888888888888888877 3344 4455555556677
Q ss_pred cccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 411 SADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
. .++++.|..+.+++.+..|.+-.+|..|+.+|.+.|++++|+-.++.+.
T Consensus 246 ~---k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 S---KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred h---cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7 8899999999999999999999999999999999999999999888775
No 136
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.23 E-value=2.4e-06 Score=50.07 Aligned_cols=35 Identities=31% Similarity=0.725 Sum_probs=33.0
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCc
Q 048578 97 FAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDS 131 (519)
Q Consensus 97 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 131 (519)
.+||.+|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999984
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.22 E-value=0.00058 Score=63.91 Aligned_cols=137 Identities=15% Similarity=0.076 Sum_probs=93.9
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHH
Q 048578 274 MYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPD-DVTLIAVLTACSHAGLIEK 349 (519)
Q Consensus 274 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~ 349 (519)
.+...|++++|+..++.+.. .|+..+......+.+.++.++|.+.++++... .|+ ......+..++.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 34456777777777776643 35555666667777777777777777777763 555 3455666777777777777
Q ss_pred HHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHH
Q 048578 350 GKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLI 429 (519)
Q Consensus 350 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~ 429 (519)
|+.++..... ..+-|+..|..|.++|...|+..+|.....+ ++.. .|+++.|...+..+.
T Consensus 393 ai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE---------------~~~~---~G~~~~A~~~l~~A~ 452 (484)
T COG4783 393 AIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARAE---------------GYAL---AGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHHH---------------HHHh---CCCHHHHHHHHHHHH
Confidence 7777777766 5566677777777777777777777665544 3444 677777777777777
Q ss_pred hhC
Q 048578 430 KLE 432 (519)
Q Consensus 430 ~~~ 432 (519)
+..
T Consensus 453 ~~~ 455 (484)
T COG4783 453 QQV 455 (484)
T ss_pred Hhc
Confidence 655
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.20 E-value=5.7e-05 Score=60.70 Aligned_cols=101 Identities=13% Similarity=0.046 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 048578 332 VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTAC 409 (519)
Q Consensus 332 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 409 (519)
.....+...+...|++++|...|+.+.. ..+.+...+..+...+...|++++|...++.. ...| +...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3555666677777888888888877766 23446677777788888888888888877776 4445 345566666667
Q ss_pred ccccCCCCHHHHHHHHHHHHhhCCCCCc
Q 048578 410 ASADDGANVELAEIAMERLIKLEPFNDG 437 (519)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (519)
.. .|+++.|...++++.+.+|++..
T Consensus 96 ~~---~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 96 LA---LGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HH---cCCHHHHHHHHHHHHHhccccch
Confidence 77 78888888888888888887544
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.17 E-value=3.5e-06 Score=48.95 Aligned_cols=34 Identities=29% Similarity=0.603 Sum_probs=32.1
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 048578 96 TFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDP 129 (519)
Q Consensus 96 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p 129 (519)
+.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999987
No 140
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.14 E-value=0.0036 Score=63.76 Aligned_cols=416 Identities=12% Similarity=0.036 Sum_probs=213.4
Q ss_pred HHhccCchHHHHHHHHHHHhcCCCC-chhHHHHHHHHHhhcCCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCh
Q 048578 37 LQKCTHLVQFKQVHAQIIKASFDNR-TISDTQLAKLIESLVNSSQIAYAHLVFNQIIN---PSTFAFNTVIRGYAEAGLG 112 (519)
Q Consensus 37 l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~ 112 (519)
...|.+......+...+....+.++ ...|..|-..|... .+...|.+.|+...+ .+..++......|++..++
T Consensus 466 a~~~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~---~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~w 542 (1238)
T KOG1127|consen 466 ALGCMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDS---DDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTW 542 (1238)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccH
Confidence 3344444455555555555555554 34577777777777 677778888877744 3456677777888888888
Q ss_pred hHHHHHHHHHHhCCCCCCcchHHHHHH--HHcCccchHHHHHHHHHhCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhc
Q 048578 113 HRGIQLYTQMIGNGLDPDSFTYPILLK--ACGDLRQVKGVHSLVVKSKDFNS-VIHSLTRLITFYCNFGDVKSAQLLFDQ 189 (519)
Q Consensus 113 ~~a~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 189 (519)
+.|..+.-..-+.. +.-...++.+-. .+-..++..++...++..-...| |...|..+..+|.++|++..|.++|.+
T Consensus 543 e~a~~I~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~k 621 (1238)
T KOG1127|consen 543 EEAFEICLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTK 621 (1238)
T ss_pred HHHHHHHHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhh
Confidence 88877733222211 111112332222 23444444444444444322444 566777788888888888888888877
Q ss_pred CCCCchhHH-HH--HHHHHHHcCChhHHHHHHHHHHhC------CCCCCHHHHHHHHHHHhccCChHHHHHHHHH-----
Q 048578 190 MTEKNVVTW-TA--MINGHVKQKNYREGIDLFRKMRDS------GVEVNELTLVSVLSACANLGASELGKWVHEF----- 255 (519)
Q Consensus 190 ~~~~~~~~~-~~--li~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~----- 255 (519)
...-++.++ .. ..-.-+..|.+.+|+..+...... +...-..++..+...+...|-...+..+++.
T Consensus 622 As~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f 701 (1238)
T KOG1127|consen 622 ASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESF 701 (1238)
T ss_pred hHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 654332221 11 111234455555555555443221 0000111121111111111111111111111
Q ss_pred --HHHcCC-----------------------Ccc---------------------------------------hhHHHHH
Q 048578 256 --VNKNCI-----------------------ILN---------------------------------------DKLGAAL 271 (519)
Q Consensus 256 --~~~~~~-----------------------~~~---------------------------------------~~~~~~l 271 (519)
...... .|+ +.++..+
T Consensus 702 ~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNL 781 (1238)
T KOG1127|consen 702 IVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNL 781 (1238)
T ss_pred HHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHH
Confidence 111000 011 1111112
Q ss_pred HHHHHh----c----CCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048578 272 TDMYAK----C----GYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTA 340 (519)
Q Consensus 272 ~~~~~~----~----g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 340 (519)
+..|.+ . .+...|+..+.+.++ .+...|+.|.-. ...|++.-+..-|-+-.... +-...+|..+.-.
T Consensus 782 Ginylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL 859 (1238)
T KOG1127|consen 782 GINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVL 859 (1238)
T ss_pred hHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheecccee
Confidence 111111 0 111233333333322 233444444333 33344444444444333221 2233456566666
Q ss_pred HhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCHHHHHHHHHHHcccc
Q 048578 341 CSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-------PMEPNAVLWGSLLTACASAD 413 (519)
Q Consensus 341 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~~ 413 (519)
|.+..+++.|...|...+. -.+.+...|.-........|+.-++..+|..- |-.|.-.-|.....-...
T Consensus 860 ~l~n~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~-- 935 (1238)
T KOG1127|consen 860 VLENQDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQ-- 935 (1238)
T ss_pred EEecccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHh--
Confidence 6677888999999888876 34456667766666666778888888887662 333444433333333444
Q ss_pred CCCCHHH----------HHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 414 DGANVEL----------AEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 414 ~~~~~~~----------a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
.|+.++ |.-.+++.....|+...+|...+....+.+.+.+|.+...+..
T Consensus 936 -Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 936 -NGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred -ccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 444444 4444555566779999999999999999999999888777653
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.11 E-value=0.00011 Score=59.66 Aligned_cols=114 Identities=18% Similarity=0.190 Sum_probs=66.0
Q ss_pred cCcHHHHHHHHHHcHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHccccCCCC
Q 048578 344 AGLIEKGKEIFYNMRRDYKVEP-NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNA----VLWGSLLTACASADDGAN 417 (519)
Q Consensus 344 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~~~~~~ 417 (519)
.++...+...++.+.+.++-.+ .....-.+...+...|++++|...|+.. ...|+. .....+...+.. .|+
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~---~~~ 100 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ---QGQ 100 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH---cCC
Confidence 5666666666666666322111 1223334556666677777777777666 222332 133334455666 777
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 048578 418 VELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRL 461 (519)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (519)
+++|...++.. ...+..+..+...+++|.+.|++++|...|++
T Consensus 101 ~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 101 YDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777777552 22233456666777777777777777777765
No 142
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.11 E-value=5.7e-06 Score=48.41 Aligned_cols=34 Identities=29% Similarity=0.626 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH
Q 048578 197 TWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNE 230 (519)
Q Consensus 197 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 230 (519)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6899999999999999999999999999998873
No 143
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=0.00039 Score=59.29 Aligned_cols=164 Identities=14% Similarity=0.113 Sum_probs=131.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHH
Q 048578 298 TWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDV-TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDL 376 (519)
Q Consensus 298 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (519)
.|..++-+....|+.+-|...++++... + |.+. .-..-.--+-..|++++|+++++.+.+ .-+.|..++-.-+-+
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~--ddpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLE--DDPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhc--cCcchhHHHHHHHHH
Confidence 3455666777889999999999998765 2 4443 222223335667999999999999998 346677778777777
Q ss_pred HHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC---C
Q 048578 377 LCRARLLDEAYEVIRNM--PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKA---Q 451 (519)
Q Consensus 377 ~~~~~~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~ 451 (519)
.-..|+.-+|++-+.+. .+-.|...|.-+-..|.. .|++++|.-.+++++-.+|-++..+..+++++.-.| +
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~---~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN 206 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS---EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAEN 206 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh---HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHH
Confidence 77888888888877766 556688999999999999 999999999999999999999999999999887555 6
Q ss_pred chHHHHHHHHHHhCCCc
Q 048578 452 WDDAGKMRRLMKERNIV 468 (519)
Q Consensus 452 ~~~A~~~~~~m~~~~~~ 468 (519)
++-|.++|++..+.+.+
T Consensus 207 ~~~arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 207 LELARKYYERALKLNPK 223 (289)
T ss_pred HHHHHHHHHHHHHhChH
Confidence 67788899998876663
No 144
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=4.7e-05 Score=66.99 Aligned_cols=110 Identities=13% Similarity=0.098 Sum_probs=93.7
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHH
Q 048578 363 VEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYV 440 (519)
Q Consensus 363 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (519)
-+-|...|..|...|...|+...|..-|.+. .+.| +...+..+..++..+.+.....++..+++++++.+|.|.++..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 4568899999999999999999999999988 5554 4556666667655544567788999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhCCCccCCc
Q 048578 441 LMSNIYAAKAQWDDAGKMRRLMKERNIVKNPG 472 (519)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 472 (519)
.|+..+...|++.+|...++.|.+.....+|.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 99999999999999999999999877765444
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.07 E-value=7.7e-06 Score=47.46 Aligned_cols=33 Identities=24% Similarity=0.494 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 048578 196 VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEV 228 (519)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 228 (519)
.+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888899999999999999999988888876
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.02 E-value=4.6e-05 Score=56.59 Aligned_cols=94 Identities=20% Similarity=0.175 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 048578 369 HYGCLVDLLCRARLLDEAYEVIRNM-PMEPNA-VLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIY 446 (519)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (519)
.+..++..+...|++++|...+++. ...|+. ..+..+...+.. .++++.|.+.+++..+..|.+...+..++.++
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYK---LGKYEEALEDYEKALELDPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence 3455677777888888888888876 444543 556666666777 78889999999988888888888888888899
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 048578 447 AAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 447 ~~~g~~~~A~~~~~~m~~~ 465 (519)
...|++++|...+++..+.
T Consensus 79 ~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 79 YKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHhHHHHHHHHHHHHcc
Confidence 9999999999888887653
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.00 E-value=0.0001 Score=57.65 Aligned_cols=93 Identities=14% Similarity=0.028 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC---CchHHH
Q 048578 370 YGCLVDLLCRARLLDEAYEVIRNM-PMEPN----AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN---DGNYVL 441 (519)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~ 441 (519)
+..++..+.+.|++++|.+.|+.+ ...|+ ...+..+...+.. .|+++.|...++.+.+..|.+ +.++..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA---QGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh---hccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 334444445555555555555444 21222 1233334444444 555555555555555554442 334555
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhC
Q 048578 442 MSNIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
++.++.+.|++++|.+.++++.+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555555555544
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.99 E-value=0.00013 Score=56.96 Aligned_cols=105 Identities=12% Similarity=0.045 Sum_probs=65.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHH
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEP-NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN----AVLWGSLL 406 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~----~~~~~~ll 406 (519)
++..++..+.+.|++++|...|..+.....-.+ ....+..+..++.+.|++++|...|+.+ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 445556666667777777777777765321111 1334555677777777777777777766 32333 34455555
Q ss_pred HHHccccCCCCHHHHHHHHHHHHhhCCCCCchHH
Q 048578 407 TACASADDGANVELAEIAMERLIKLEPFNDGNYV 440 (519)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (519)
..+.. .|+.+.|...++++++..|+++....
T Consensus 84 ~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQE---LGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHH---hCChHHHHHHHHHHHHHCcCChhHHH
Confidence 66666 77778888888887777777655443
No 149
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.92 E-value=0.00011 Score=64.34 Aligned_cols=100 Identities=13% Similarity=0.077 Sum_probs=45.8
Q ss_pred hccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHccccCCCCHH
Q 048578 342 SHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNA-VLWGSLLTACASADDGANVE 419 (519)
Q Consensus 342 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~~~ 419 (519)
.+.+++++|+..|.+..+ -.+-|...|..-..+|.+.|.++.|.+-.+.. .+.|+. .+|..|-.+|.. .|+++
T Consensus 92 m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~---~gk~~ 166 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA---LGKYE 166 (304)
T ss_pred HHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc---cCcHH
Confidence 344445555555544444 22233344444444555555555554444443 444432 244445445544 45555
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHH
Q 048578 420 LAEIAMERLIKLEPFNDGNYVLMSNIY 446 (519)
Q Consensus 420 ~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (519)
+|++.|+++++++|+|......|-.+-
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKIAE 193 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHHHH
Confidence 555555555555555444444433333
No 150
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.92 E-value=0.018 Score=53.19 Aligned_cols=123 Identities=15% Similarity=0.064 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 048578 267 LGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGL 346 (519)
Q Consensus 267 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 346 (519)
+.+..+.-+...|+...|.++-.+..-|+...|...+.+++..++|++-..+... .- +..-|..++.+|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCC
Confidence 3444456667778888888888888778888888888888888888877765432 11 23667778888888888
Q ss_pred HHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048578 347 IEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTAC 409 (519)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 409 (519)
..+|..+..++. +..-+..|.++|++.+|.+.--+.+ |...+..+...+
T Consensus 253 ~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 253 KKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 888887776631 1345677788888888877655532 344444444333
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.90 E-value=0.00098 Score=54.15 Aligned_cols=115 Identities=15% Similarity=0.103 Sum_probs=56.9
Q ss_pred cCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC--hhHHHHHHHHHHhcCCh
Q 048578 309 HGCGEEAVKMFWQMQMSGIKPD---DVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN--VKHYGCLVDLLCRARLL 383 (519)
Q Consensus 309 ~g~~~~a~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~ 383 (519)
.++...+...++.+.... +.+ ......+...+...|++++|...|+.+... ...|+ ......+...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCH
Confidence 555555655566655432 111 123333445555666666666666666552 21111 12233455556666666
Q ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHccccCCCCHHHHHHHHHHH
Q 048578 384 DEAYEVIRNMPM-EPNAVLWGSLLTACASADDGANVELAEIAMERL 428 (519)
Q Consensus 384 ~~A~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~ 428 (519)
++|+..++...- ......+......+.. .|+.++|...|+++
T Consensus 102 d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~---~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 102 DEALATLQQIPDEAFKALAAELLGDIYLA---QGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHH---CCCHHHHHHHHHHh
Confidence 666666655411 1222333444444555 66666666666553
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.89 E-value=1.3e-05 Score=58.09 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=41.6
Q ss_pred CChHHHHHHHHhC-CCCC---CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHH
Q 048578 381 RLLDEAYEVIRNM-PMEP---NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAG 456 (519)
Q Consensus 381 ~~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 456 (519)
|+++.|+.+++++ ...| +...+..+..++.+ .|++++|..++++ .+.+|.+......++.++.+.|++++|+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~---~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ---QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH---TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH---CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4555555555555 2222 23333335555566 6666666666666 5455555555555566666666666666
Q ss_pred HHHHH
Q 048578 457 KMRRL 461 (519)
Q Consensus 457 ~~~~~ 461 (519)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66654
No 153
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.86 E-value=0.00039 Score=63.32 Aligned_cols=132 Identities=13% Similarity=0.129 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHH
Q 048578 297 CTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTA-CSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVD 375 (519)
Q Consensus 297 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 375 (519)
.+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 367788888888889999999999998543 3333444444444 33357778899999999984 5567788999999
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 376 LLCRARLLDEAYEVIRNM-PMEPNA----VLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 376 ~~~~~~~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
.+...++.+.|..+|++. ..-|.. ..|...+..-.. .|+.+.+.++.+++.+.-|.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~---~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESK---YGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHhhh
Confidence 999999999999999988 333333 489999988888 89999999999999988877
No 154
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.85 E-value=4e-05 Score=53.14 Aligned_cols=65 Identities=22% Similarity=0.197 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC-CchHHHHHHHHHHhC
Q 048578 398 NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKA-QWDDAGKMRRLMKER 465 (519)
Q Consensus 398 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 465 (519)
+..+|..+...+.. .|++++|+..|+++++.+|.++.+|..++.+|...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~---~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQ---QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45677778888888 899999999999999999999999999999999999 799999999887653
No 155
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.84 E-value=0.0016 Score=59.68 Aligned_cols=149 Identities=15% Similarity=0.197 Sum_probs=75.2
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHc-CChHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHhccC
Q 048578 273 DMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIH-GCGEEAVKMFWQMQM----SGIKPD--DVTLIAVLTACSHAG 345 (519)
Q Consensus 273 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~----~g~~p~--~~~~~~l~~~~~~~g 345 (519)
..|...|++..|-.++.. +...|... |++++|++.|++..+ .| .+. ...+..+...+.+.|
T Consensus 102 ~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhC
Confidence 345556665555544332 34444444 666666666666532 22 111 125556666777777
Q ss_pred cHHHHHHHHHHcHHhcCC----CCChh-HHHHHHHHHHhcCChHHHHHHHHhC-CCCC----C--HHHHHHHHHHHcccc
Q 048578 346 LIEKGKEIFYNMRRDYKV----EPNVK-HYGCLVDLLCRARLLDEAYEVIRNM-PMEP----N--AVLWGSLLTACASAD 413 (519)
Q Consensus 346 ~~~~a~~~~~~~~~~~~~----~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p----~--~~~~~~ll~~~~~~~ 413 (519)
++++|.++|+++....-- ..+.. .|-..+-++...||...|.+.+++. ...| + ......|+.++-. +
T Consensus 170 ~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~-~ 248 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE-G 248 (282)
T ss_dssp -HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT-T
T ss_pred CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh-C
Confidence 888888877777652111 11121 2233344556677777777777765 3322 2 2245555555543 3
Q ss_pred CCCCHHHHHHHHHHHHhhCCC
Q 048578 414 DGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~~p~ 434 (519)
+...++.+..-|+.+.+++|.
T Consensus 249 D~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 249 DVEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp -CCCHHHHCHHHTTSS---HH
T ss_pred CHHHHHHHHHHHcccCccHHH
Confidence 355666666666666555544
No 156
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.81 E-value=2.9e-05 Score=43.86 Aligned_cols=31 Identities=23% Similarity=0.614 Sum_probs=28.4
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 048578 97 FAFNTVIRGYAEAGLGHRGIQLYTQMIGNGL 127 (519)
Q Consensus 97 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 127 (519)
.+||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998874
No 157
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.80 E-value=0.00019 Score=67.82 Aligned_cols=109 Identities=14% Similarity=0.045 Sum_probs=90.9
Q ss_pred HHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHcccc
Q 048578 336 AVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASAD 413 (519)
Q Consensus 336 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~ 413 (519)
.-...+...|+++.|+..|+++.+ ..+.+...|..+..+|...|++++|+..++++ .+.| +...|..+..+|..
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~-- 82 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK-- 82 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH--
Confidence 345567788999999999999988 34456778889999999999999999999998 6667 45677778888888
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 048578 414 DGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAK 449 (519)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 449 (519)
.|++++|...|+++++++|.++.+...+..+..+.
T Consensus 83 -lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 83 -LEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred -hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999988877776654444
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.79 E-value=0.00029 Score=59.24 Aligned_cols=80 Identities=15% Similarity=0.061 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 048578 369 HYGCLVDLLCRARLLDEAYEVIRNM-PMEPN----AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMS 443 (519)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (519)
.+..+...+...|++++|...|++. ...|+ ...+..+...+.. .|++++|...++++++..|.+...+..++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS---NGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 4455555556666666666666555 22222 2355555555666 67777777777777777777677777777
Q ss_pred HHHHhcCC
Q 048578 444 NIYAAKAQ 451 (519)
Q Consensus 444 ~~~~~~g~ 451 (519)
.+|...|+
T Consensus 114 ~~~~~~g~ 121 (172)
T PRK02603 114 VIYHKRGE 121 (172)
T ss_pred HHHHHcCC
Confidence 77766665
No 159
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.79 E-value=0.032 Score=52.07 Aligned_cols=375 Identities=12% Similarity=0.076 Sum_probs=215.2
Q ss_pred CchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChhHHHHH
Q 048578 42 HLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPST---FAFNTVIRGYAEAGLGHRGIQL 118 (519)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~ 118 (519)
-++|..++-+.+++. |.|..+|-+|+..|... +..++-.++++++..|-+ .+|..-|++-....++.....+
T Consensus 24 i~~D~lrLRerIkdN--PtnI~S~fqLiq~~~tq---~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~l 98 (660)
T COG5107 24 IHGDELRLRERIKDN--PTNILSYFQLIQYLETQ---ESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESL 98 (660)
T ss_pred CCchHHHHHHHhhcC--chhHHHHHHHHHHHhhh---hhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHH
Confidence 344556666666543 66788999999999998 999999999999987765 5788888888888999999999
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHcCcc-----c----hHHHHHHHHHhCCCCCc-hhHHHHHHHH---HHhcC------C
Q 048578 119 YTQMIGNGLDPDSFTYPILLKACGDLR-----Q----VKGVHSLVVKSKDFNSV-IHSLTRLITF---YCNFG------D 179 (519)
Q Consensus 119 ~~~m~~~g~~p~~~~~~~ll~~~~~~~-----~----~~~~~~~~~~~~~~~~~-~~~~~~l~~~---~~~~g------~ 179 (519)
|.+.....+. ...|..-+.-..+.. + .-++++.+.....+.|- ...|+..+.. .-..| +
T Consensus 99 f~rCL~k~l~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqr 176 (660)
T COG5107 99 FGRCLKKSLN--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQR 176 (660)
T ss_pred HHHHHhhhcc--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHH
Confidence 9998886544 444444444333322 1 55666666665445553 2333333322 11222 3
Q ss_pred hHHHHHHHhcCCC-C--c---------------------------hhHH----------HHHHHHHHHcC----------
Q 048578 180 VKSAQLLFDQMTE-K--N---------------------------VVTW----------TAMINGHVKQK---------- 209 (519)
Q Consensus 180 ~~~A~~~~~~~~~-~--~---------------------------~~~~----------~~li~~~~~~~---------- 209 (519)
++...+.+.++.. | + ...| ..+..++....
T Consensus 177 id~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~ 256 (660)
T COG5107 177 IDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKA 256 (660)
T ss_pred HHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccc
Confidence 3344444444431 0 0 0000 00111111000
Q ss_pred ------------------------C--hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCc
Q 048578 210 ------------------------N--YREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIIL 263 (519)
Q Consensus 210 ------------------------~--~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 263 (519)
+ .....-++++.... +......|----..+...+|-+.|.+.... |.+.
T Consensus 257 ~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~r----g~~~ 331 (660)
T COG5107 257 ARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVER----GIEM 331 (660)
T ss_pred cccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHh----cccC
Confidence 0 00011111111111 111222332222233444555555544333 2222
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcC---------------------------------CCChhhHHHHHHHHHHcC
Q 048578 264 NDKLGAALTDMYAKCGYIEEALRVFKIVL---------------------------------EKNVCTWNSIIGGLAIHG 310 (519)
Q Consensus 264 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---------------------------------~~~~~~~~~l~~~~~~~g 310 (519)
.+..--.+...|-..++-+.....|++.. .+-..+|...+....+..
T Consensus 332 spsL~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~ 411 (660)
T COG5107 332 SPSLTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKR 411 (660)
T ss_pred CCchheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 22221222333333334333333333321 011235666777777888
Q ss_pred ChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 048578 311 CGEEAVKMFWQMQMSG-IKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEV 389 (519)
Q Consensus 311 ~~~~a~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 389 (519)
..+.|..+|-+..+.| +.++...+++++..++ .|+...|..+|+.-... ++.+..--+..+..+.+.++-..|..+
T Consensus 412 Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraL 488 (660)
T COG5107 412 GLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARAL 488 (660)
T ss_pred hHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHH
Confidence 8888999999988888 5677778888887655 57788888888877663 323333344567777888888889888
Q ss_pred HHhC--CCCCC--HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 390 IRNM--PMEPN--AVLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 390 ~~~~--~~~p~--~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
|+.. .+..+ ...|..+|..-.. .|+...+..+-+++.+.-|.
T Consensus 489 Fetsv~r~~~~q~k~iy~kmi~YEs~---~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 489 FETSVERLEKTQLKRIYDKMIEYESM---VGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHhHHHHHHhhhhHHHHHHHHHHHh---hcchHHHHhHHHHHHHHcCc
Confidence 8865 33333 4578888888777 88888888888888887776
No 160
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.78 E-value=4.9e-05 Score=51.94 Aligned_cols=58 Identities=21% Similarity=0.224 Sum_probs=48.2
Q ss_pred HHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 406 LTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 406 l~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
...+.. .|++++|...|+++++..|.++.++..++.++...|++++|...|+++.+..
T Consensus 4 a~~~~~---~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 4 ARALYQ---QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHH---CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHH---cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 345666 8889999999999999999989999999999999999999999998887644
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.78 E-value=0.00045 Score=65.36 Aligned_cols=106 Identities=10% Similarity=-0.023 Sum_probs=87.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcC
Q 048578 302 IIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRAR 381 (519)
Q Consensus 302 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (519)
-...+...|++++|+..|+++++.. +-+...|..+..+|...|++++|+..++++.. -.+.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence 3556778899999999999999854 44566888899999999999999999999987 33456778889999999999
Q ss_pred ChHHHHHHHHhC-CCCCCHHHHHHHHHHHc
Q 048578 382 LLDEAYEVIRNM-PMEPNAVLWGSLLTACA 410 (519)
Q Consensus 382 ~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~ 410 (519)
++++|...|++. .+.|+...+...+..|.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999998 77787766665555443
No 162
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.73 E-value=0.00054 Score=50.61 Aligned_cols=89 Identities=16% Similarity=0.039 Sum_probs=41.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhc
Q 048578 301 SIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRA 380 (519)
Q Consensus 301 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 380 (519)
.+...+...|++++|...+++..+.. +.+...+..+..++...|+++.|.+.++.... ..+.+...+..+...+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALE--LDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHHH
Confidence 34444444555555555555554431 11223444444455555555555555555444 1122223444444455555
Q ss_pred CChHHHHHHHHh
Q 048578 381 RLLDEAYEVIRN 392 (519)
Q Consensus 381 ~~~~~A~~~~~~ 392 (519)
|++++|...+..
T Consensus 82 ~~~~~a~~~~~~ 93 (100)
T cd00189 82 GKYEEALEAYEK 93 (100)
T ss_pred HhHHHHHHHHHH
Confidence 555555544443
No 163
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.73 E-value=4.2e-05 Score=43.15 Aligned_cols=30 Identities=30% Similarity=0.757 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 048578 197 TWTAMINGHVKQKNYREGIDLFRKMRDSGV 226 (519)
Q Consensus 197 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 226 (519)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 678888888888888888888888877663
No 164
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.72 E-value=0.0023 Score=63.40 Aligned_cols=138 Identities=14% Similarity=0.024 Sum_probs=63.2
Q ss_pred CChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcc--------CcHHHHHHHHHHcHH
Q 048578 294 KNVCTWNSIIGGLAIH-----GCGEEAVKMFWQMQMSGIKPDDV-TLIAVLTACSHA--------GLIEKGKEIFYNMRR 359 (519)
Q Consensus 294 ~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~--------g~~~~a~~~~~~~~~ 359 (519)
.+..+|...+.+.... ++...|..+|++..+. .|+.. .+..+..++... +++..+.+.......
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 3556666666654332 2255677777777663 45532 333332222111 112222222222211
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCC
Q 048578 360 DYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFND 436 (519)
Q Consensus 360 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (519)
....+.+...|..+.-.+...|++++|...++++ .+.|+...|..+...+.. .|+.++|.+.++++..++|.++
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~---~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYEL---KGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCc
Confidence 0012223344444444444455555555555555 444554455555555555 5555555555555555555544
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.71 E-value=0.0014 Score=55.00 Aligned_cols=129 Identities=13% Similarity=0.046 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHH
Q 048578 297 CTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPD--DVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLV 374 (519)
Q Consensus 297 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 374 (519)
..+..+...+...|++++|...|++..+.+..+. ...+..+..++.+.|++++|...+.+.... .+.+...+..+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 3455555666666666666666666654322221 235556666666666666666666666551 222344455555
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 048578 375 DLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQ 451 (519)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (519)
.++...|+...+..-++.. ...+++|.+.++++.+.+|++ +..++..+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A---------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEA---------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHH---------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 5555555544443222211 112577788888888888775 5555555554443
No 166
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.70 E-value=0.00044 Score=57.92 Aligned_cols=94 Identities=12% Similarity=-0.075 Sum_probs=72.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHH
Q 048578 366 NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN----AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYV 440 (519)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (519)
....|..++..+...|++++|...|++. .+.|+ ..++..+...+.. .|++++|...++++.+..|.....+.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~---~g~~~eA~~~~~~Al~~~~~~~~~~~ 110 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS---NGEHTKALEYYFQALERNPFLPQALN 110 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence 3556677777788888888888888877 33332 2467777777888 89999999999999999988888888
Q ss_pred HHHHHHH-------hcCCchHHHHHHHHH
Q 048578 441 LMSNIYA-------AKAQWDDAGKMRRLM 462 (519)
Q Consensus 441 ~l~~~~~-------~~g~~~~A~~~~~~m 462 (519)
.++.+|. ..|++++|...+++-
T Consensus 111 ~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 111 NMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888888 778888666655544
No 167
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.67 E-value=0.00014 Score=63.64 Aligned_cols=91 Identities=18% Similarity=0.199 Sum_probs=79.0
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCc
Q 048578 375 DLLCRARLLDEAYEVIRNM-PMEPN-AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQW 452 (519)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 452 (519)
.-+.+.+++.+|+..|.+. .+.|+ .+-|..=..+|.+ .|.++.|++-.+.+++++|....+|..|+.+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~---Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSK---LGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH---hcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 3466789999999999988 88885 4556666667999 99999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCCc
Q 048578 453 DDAGKMRRLMKERNIV 468 (519)
Q Consensus 453 ~~A~~~~~~m~~~~~~ 468 (519)
++|.+.|++..+....
T Consensus 166 ~~A~~aykKaLeldP~ 181 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPD 181 (304)
T ss_pred HHHHHHHHhhhccCCC
Confidence 9999999887764443
No 168
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.66 E-value=0.0065 Score=55.66 Aligned_cols=204 Identities=13% Similarity=0.116 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC-------C--chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 048578 165 HSLTRLITFYCNFGDVKSAQLLFDQMTE-------K--NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVS 235 (519)
Q Consensus 165 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 235 (519)
..|......|-..|++++|...|.+... + -...|.....+|.+. ++++|...+++.
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A-------------- 100 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKA-------------- 100 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHH--------------
Confidence 3455556677777777777777665422 0 011233333333332 555555544443
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhc-CCHHHHHHHHhhcCC-----CC----hhhHHHHHHH
Q 048578 236 VLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKC-GYIEEALRVFKIVLE-----KN----VCTWNSIIGG 305 (519)
Q Consensus 236 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~ 305 (519)
+..|...|++..+-..+.. +...|... |++++|++.|++..+ .. ...+..+...
T Consensus 101 -~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 101 -IEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp -HHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred -HHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 3344555555554443333 33445555 666666666665532 11 2345567778
Q ss_pred HHHcCChHHHHHHHHHHHHCCC-----CCCHH-HHHHHHHHHhccCcHHHHHHHHHHcHHhc-CCCCC--hhHHHHHHHH
Q 048578 306 LAIHGCGEEAVKMFWQMQMSGI-----KPDDV-TLIAVLTACSHAGLIEKGKEIFYNMRRDY-KVEPN--VKHYGCLVDL 376 (519)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~~~g~-----~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~--~~~~~~l~~~ 376 (519)
+.+.|++++|.++|++....-. +.+.. .|...+-++...||...|...|++..... ++..+ ......|+.+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 8899999999999998866432 22222 33334446677789999999999886521 22222 3455566777
Q ss_pred HHh--cCChHHHHHHHHhCCCCCCHH
Q 048578 377 LCR--ARLLDEAYEVIRNMPMEPNAV 400 (519)
Q Consensus 377 ~~~--~~~~~~A~~~~~~~~~~p~~~ 400 (519)
+-. ...+.+|+.-|+.+. +.|..
T Consensus 245 ~~~~D~e~f~~av~~~d~~~-~ld~w 269 (282)
T PF14938_consen 245 YEEGDVEAFTEAVAEYDSIS-RLDNW 269 (282)
T ss_dssp HHTT-CCCHHHHCHHHTTSS----HH
T ss_pred HHhCCHHHHHHHHHHHcccC-ccHHH
Confidence 654 345777777777773 33444
No 169
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.66 E-value=0.0094 Score=48.56 Aligned_cols=131 Identities=12% Similarity=0.053 Sum_probs=104.6
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC------CCCCCHH
Q 048578 327 IKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM------PMEPNAV 400 (519)
Q Consensus 327 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------~~~p~~~ 400 (519)
..|+..--..|..+..+.|+..+|...|++... .-+..|......+.++....++...|...+++. +..||
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd-- 161 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD-- 161 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--
Confidence 467777778888899999999999999999887 244567777888888999999999999999887 22333
Q ss_pred HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 401 LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 401 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
+...+.+.+.. .|.+..|+..|+.++...|. +.........+.++|+..+|..-+..+.+
T Consensus 162 ~~Ll~aR~laa---~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 162 GHLLFARTLAA---QGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred chHHHHHHHHh---cCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 34445667888 88999999999999999887 77788888889999988888776555543
No 170
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.62 E-value=0.0013 Score=48.83 Aligned_cols=82 Identities=17% Similarity=0.058 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccC--------ChHHHHHHHHHHHHcCCCcchhH
Q 048578 197 TWTAMINGHVKQKNYREGIDLFRKMRDSGV-EVNELTLVSVLSACANLG--------ASELGKWVHEFVNKNCIILNDKL 267 (519)
Q Consensus 197 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 267 (519)
+....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ..-....+++.+...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556667777999999999999999999 899999999999877654 23345678888888899999999
Q ss_pred HHHHHHHHHhc
Q 048578 268 GAALTDMYAKC 278 (519)
Q Consensus 268 ~~~l~~~~~~~ 278 (519)
|+.++..+.+.
T Consensus 107 Ynivl~~Llkg 117 (120)
T PF08579_consen 107 YNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHh
Confidence 99988877653
No 171
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.60 E-value=7.6e-05 Score=51.56 Aligned_cols=53 Identities=17% Similarity=0.296 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 415 GANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
.|++++|.+.++++.+.+|.+..++..++.+|.+.|++++|.++++++.....
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 68899999999999999999999999999999999999999999988766444
No 172
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.58 E-value=0.00036 Score=63.59 Aligned_cols=130 Identities=12% Similarity=-0.063 Sum_probs=95.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHcH---HhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-------C-CCCCH
Q 048578 332 VTLIAVLTACSHAGLIEKGKEIFYNMR---RDYKVEP-NVKHYGCLVDLLCRARLLDEAYEVIRNM-------P-MEPNA 399 (519)
Q Consensus 332 ~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~-~~p~~ 399 (519)
..|..|...|.-.|+++.|+...+.-. +++|-.. ....+..+..++.-.|+++.|.+.|+.. | .....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 367777777778899999987665322 2244332 2456778899999999999999988765 2 22345
Q ss_pred HHHHHHHHHHccccCCCCHHHHHHHHHHHHhh----C--CCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 400 VLWGSLLTACASADDGANVELAEIAMERLIKL----E--PFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 400 ~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
.+..+|...|.- ..++++|+.++.+=+.+ + ....+++..|+.+|...|.-++|+...+.-.+
T Consensus 276 QscYSLgNtytl---l~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTL---LKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 577778888888 77899999988775542 2 22567888999999999999999988776654
No 173
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.58 E-value=0.00025 Score=49.72 Aligned_cols=58 Identities=14% Similarity=0.094 Sum_probs=52.3
Q ss_pred HHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 407 TACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
..|.. .++++.|.+.++++++.+|.++..+...+.++.+.|++++|.+.+++..+.+.
T Consensus 3 ~~~~~---~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQ---QEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHh---CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 45666 88999999999999999999999999999999999999999999999987554
No 174
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.0035 Score=57.48 Aligned_cols=159 Identities=14% Similarity=0.066 Sum_probs=91.2
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChh-------------HHH
Q 048578 305 GLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVK-------------HYG 371 (519)
Q Consensus 305 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------------~~~ 371 (519)
++.-.|+.++|..+--...+.. ..+......-..++.-.++.+.|...|++... ..|+.. .+.
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHH
Confidence 4445666666666665555432 11222222222234445666666666666554 233321 122
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 048578 372 CLVDLLCRARLLDEAYEVIRNM-PMEPN-----AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNI 445 (519)
Q Consensus 372 ~l~~~~~~~~~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (519)
.-..-..+.|++.+|.+.|.+. ++.|+ ...|.....+..+ .|+..+|+.--+++.+++|.-..+|..-+.+
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~r---Lgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIR---LGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcc---cCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 2223345677777777777776 44443 3344444444555 7777777777777777777666677777777
Q ss_pred HHhcCCchHHHHHHHHHHhCCCccC
Q 048578 446 YAAKAQWDDAGKMRRLMKERNIVKN 470 (519)
Q Consensus 446 ~~~~g~~~~A~~~~~~m~~~~~~~~ 470 (519)
+.-.++|++|.+-+++..+..-.+.
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~s~e 355 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEKDCE 355 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccc
Confidence 7777777777777777665544433
No 175
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.56 E-value=0.00024 Score=51.48 Aligned_cols=81 Identities=17% Similarity=0.173 Sum_probs=51.2
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 048578 309 HGCGEEAVKMFWQMQMSGIK-PDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAY 387 (519)
Q Consensus 309 ~g~~~~a~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 387 (519)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. .+. +. .+......+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~-~~-~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL-DP-SNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH-HH-CHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC-CC-CCHHHHHHHHHHHHHhCCHHHHH
Confidence 57778888888887765321 2344555577788888888888888877 221 11 22344445577788888888888
Q ss_pred HHHHh
Q 048578 388 EVIRN 392 (519)
Q Consensus 388 ~~~~~ 392 (519)
++|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77764
No 176
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.53 E-value=0.0016 Score=48.32 Aligned_cols=79 Identities=14% Similarity=0.157 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------cHHHHHHHHHHcHHhcCCCCChhHH
Q 048578 300 NSIIGGLAIHGCGEEAVKMFWQMQMSGI-KPDDVTLIAVLTACSHAG--------LIEKGKEIFYNMRRDYKVEPNVKHY 370 (519)
Q Consensus 300 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~ 370 (519)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.+.. .+++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHHHH
Confidence 3345566667999999999999999999 899999999998876543 34556778888887 4788888888
Q ss_pred HHHHHHHHh
Q 048578 371 GCLVDLLCR 379 (519)
Q Consensus 371 ~~l~~~~~~ 379 (519)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888877654
No 177
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.51 E-value=0.074 Score=49.20 Aligned_cols=111 Identities=14% Similarity=0.165 Sum_probs=87.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccc
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASA 412 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 412 (519)
+.+..+.-|...|+...|.++-.+. ++ |+..-|...+.+|+..++|++-.++... +-++..|..++.+|..
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~- 249 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK- 249 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH-
Confidence 5556667777888888777765444 45 8888999999999999999988887654 3345778889999999
Q ss_pred cCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 413 DDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
.|+..+|..+..+ ..+..-+..|.++|+|.+|.+.--+.+
T Consensus 250 --~~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 250 --YGNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred --CCCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 8999999998887 122677889999999999988765544
No 178
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.50 E-value=0.015 Score=51.58 Aligned_cols=55 Identities=16% Similarity=0.096 Sum_probs=27.1
Q ss_pred HHHHHhccCcHHHHHHHHHHcHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHH
Q 048578 337 VLTACSHAGLIEKGKEIFYNMRRDYKVEP-NVKHYGCLVDLLCRARLLDEAYEVIR 391 (519)
Q Consensus 337 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 391 (519)
+.+-|.+.|.+..|..-++.+.+++.-.| .......++.+|...|..++|..+..
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34445555555555555555555332222 22334445555555666555555443
No 179
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.49 E-value=0.001 Score=63.18 Aligned_cols=118 Identities=10% Similarity=0.006 Sum_probs=86.1
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-C-----chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 048578 161 NSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE-K-----NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLV 234 (519)
Q Consensus 161 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 234 (519)
+.+......+++.+....+++.+..++.+... | -..|..++++.|...|..+.++.+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 34455555666666666777777777766654 2 13355688888888888888888888888888888888888
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhc
Q 048578 235 SVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKC 278 (519)
Q Consensus 235 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 278 (519)
.+++.+.+.|++..|.++...|...+...+..++...+.++.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888877777666666666555555554
No 180
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.48 E-value=0.081 Score=48.57 Aligned_cols=274 Identities=16% Similarity=0.171 Sum_probs=164.5
Q ss_pred cCChHHHHHHHhcCCC---CchhHHHHHHH--HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH----HhccCChH
Q 048578 177 FGDVKSAQLLFDQMTE---KNVVTWTAMIN--GHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSA----CANLGASE 247 (519)
Q Consensus 177 ~g~~~~A~~~~~~~~~---~~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~----~~~~~~~~ 247 (519)
.|+-..|.++-.+..+ .|....-.++. +-.-.|+++.|.+-|+.|.. |+.|-..-+++ ..+.|+.+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHH
Confidence 4555555555444322 33333333333 23445777777777777764 22222222222 23556666
Q ss_pred HHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhc-----CCCChhh--HHHHHHHH---HHcCChHHHHH
Q 048578 248 LGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIV-----LEKNVCT--WNSIIGGL---AIHGCGEEAVK 317 (519)
Q Consensus 248 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-----~~~~~~~--~~~l~~~~---~~~g~~~~a~~ 317 (519)
.|..+-+..-... +.-.....+.+...+..|+++.|+++++.- +++++.- -..|+.+- .-..+...|..
T Consensus 172 aAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 172 AARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 6666665554433 233445566677777777777777777643 2333321 11222211 11234555666
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---
Q 048578 318 MFWQMQMSGIKPDDV-TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM--- 393 (519)
Q Consensus 318 ~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--- 393 (519)
.-.+..+ +.||.. .-..-..++.+.|+..++-.+++.+=+ ..|.+..+.. ..+.+.|+ .++.-++..
T Consensus 251 ~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~l--Y~~ar~gd--ta~dRlkRa~~L 321 (531)
T COG3898 251 DALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALL--YVRARSGD--TALDRLKRAKKL 321 (531)
T ss_pred HHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHH--HHHhcCCC--cHHHHHHHHHHH
Confidence 5555444 567755 444556789999999999999999865 3566555432 22334444 444444333
Q ss_pred -CCCCCH-HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc-CCchHHHHHHHHHHhCCCcc
Q 048578 394 -PMEPNA-VLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAK-AQWDDAGKMRRLMKERNIVK 469 (519)
Q Consensus 394 -~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~~ 469 (519)
..+||. .+...+..+... .|++..|..--+.+....|. .++|..|+++-... |+-.++...+-+-.+.--.|
T Consensus 322 ~slk~nnaes~~~va~aAld---a~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALD---AGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HhcCccchHHHHHHHHHHHh---ccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 556654 466667777777 89999999999999999997 78899999987654 99999999988876644433
No 181
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.47 E-value=0.015 Score=46.66 Aligned_cols=92 Identities=8% Similarity=-0.094 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHH
Q 048578 298 TWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLL 377 (519)
Q Consensus 298 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (519)
....+...+...|++++|..+|+-+..-. +-+...|..|.-+|...|++++|+..|..... .. +-++..+-.+..++
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~-L~-~ddp~~~~~ag~c~ 113 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ-IK-IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cC-CCCchHHHHHHHHH
Confidence 33334444445555555555555544321 22233444555555555555555555555544 11 23344445555555
Q ss_pred HhcCChHHHHHHHHh
Q 048578 378 CRARLLDEAYEVIRN 392 (519)
Q Consensus 378 ~~~~~~~~A~~~~~~ 392 (519)
...|+.+.|.+.|+.
T Consensus 114 L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 114 LACDNVCYAIKALKA 128 (157)
T ss_pred HHcCCHHHHHHHHHH
Confidence 555555555555544
No 182
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.47 E-value=0.0011 Score=60.31 Aligned_cols=129 Identities=13% Similarity=0.137 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 048578 332 VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCR-ARLLDEAYEVIRNM--PMEPNAVLWGSLLTA 408 (519)
Q Consensus 332 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~--~~~p~~~~~~~ll~~ 408 (519)
.+|..+++.+-+.+..+.|..+|.+..+. -..+...|...+..-.. .++.+.|..+|+.. .+..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46888899999999999999999999863 22344556555555344 56777799999998 444567788888888
Q ss_pred HccccCCCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048578 409 CASADDGANVELAEIAMERLIKLEPFND---GNYVLMSNIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 409 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
+.. .++.+.|..+|++++..-|.+. .+|...+..-.+.|+++.+.++.+++.+.
T Consensus 80 l~~---~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIK---LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHH---TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHH---hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888 9999999999999998765533 58999999999999999999999998764
No 183
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.45 E-value=0.17 Score=51.57 Aligned_cols=189 Identities=7% Similarity=0.015 Sum_probs=115.3
Q ss_pred cHHHHHHhc-----cCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCCCCcc--hHHHHHH
Q 048578 32 HHLPLLQKC-----THLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTF--AFNTVIR 104 (519)
Q Consensus 32 ~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~ll~ 104 (519)
.|..+|.++ ++..++..+++.....+.. |..+...+-..|... ++.++|..+++++.+.++. ....+-.
T Consensus 43 ~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~---~~~d~~~~~Ye~~~~~~P~eell~~lFm 118 (932)
T KOG2053|consen 43 LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDL---GKLDEAVHLYERANQKYPSEELLYHLFM 118 (932)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHH---hhhhHHHHHHHHHHhhCCcHHHHHHHHH
Confidence 344555554 4555556677766665544 788899999999999 9999999999999764444 3333445
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccc-------------hHHHHHHHHHhCCCCCchhHHHHHH
Q 048578 105 GYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQ-------------VKGVHSLVVKSKDFNSVIHSLTRLI 171 (519)
Q Consensus 105 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~ 171 (519)
+|.+.+++.+-.+.=-+|-+ .++-++..|=+++........ ++...+.+.+.++--.+..-.....
T Consensus 119 ayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl 197 (932)
T KOG2053|consen 119 AYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYL 197 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHH
Confidence 67777777544444333333 233344444444443322211 4444444444442111222222334
Q ss_pred HHHHhcCChHHHHHHHhc-CC----CCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 048578 172 TFYCNFGDVKSAQLLFDQ-MT----EKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSG 225 (519)
Q Consensus 172 ~~~~~~g~~~~A~~~~~~-~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 225 (519)
..+...|++++|+.++.. .. ..+...-+.-+..+...++|.+..++-.++...|
T Consensus 198 ~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 198 LILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 456678899999999832 22 2344444566777888899999999888888876
No 184
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.44 E-value=0.00062 Score=46.41 Aligned_cols=60 Identities=23% Similarity=0.251 Sum_probs=38.7
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC
Q 048578 373 LVDLLCRARLLDEAYEVIRNM-PMEPN-AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN 435 (519)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (519)
+...+...|++++|.+.|++. ...|+ ...+..+...+.. .|++++|...++++++..|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~---~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ---QGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHCcCC
Confidence 445666777777777777776 44554 3355555566666 777777777777777777765
No 185
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.16 Score=50.72 Aligned_cols=327 Identities=12% Similarity=0.065 Sum_probs=186.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccc--hHHHHHHHHHhCCC-CCchhHHHHHHHHHHh
Q 048578 100 NTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQ--VKGVHSLVVKSKDF-NSVIHSLTRLITFYCN 176 (519)
Q Consensus 100 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 176 (519)
..+|.-+...+.+..|+++-..+...-.+- ...|......+.+..+ -+++.+.+.+.-.. -.....|..+......
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQ 519 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHh
Confidence 345667777788888888877775422112 3455555555444433 44444444333212 1344567778888888
Q ss_pred cCChHHHHHHHhcCCCC--------chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH
Q 048578 177 FGDVKSAQLLFDQMTEK--------NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASEL 248 (519)
Q Consensus 177 ~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 248 (519)
+|+.+.|..+++.=+.. +..-+...+.-+.+.|+.+....++-.+...- +...|...+ .+...
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~~l------~~~p~ 590 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFMTL------RNQPL 590 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHHH------Hhchh
Confidence 99999999888754331 22234455566677777777777776665531 122222222 23334
Q ss_pred HHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHh-hc------CCCChhhHHHHHHHHHHcCC----------
Q 048578 249 GKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFK-IV------LEKNVCTWNSIIGGLAIHGC---------- 311 (519)
Q Consensus 249 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-~~------~~~~~~~~~~l~~~~~~~g~---------- 311 (519)
|..+|.+..+..-.. .+-+.|-...+.. +...|. +- .++-..........+.+...
T Consensus 591 a~~lY~~~~r~~~~~------~l~d~y~q~dn~~-~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed 663 (829)
T KOG2280|consen 591 ALSLYRQFMRHQDRA------TLYDFYNQDDNHQ-ALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALED 663 (829)
T ss_pred hhHHHHHHHHhhchh------hhhhhhhcccchh-hhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHH
Confidence 455555544421110 1111122222222 211111 00 11111112222233333222
Q ss_pred hHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 048578 312 GEEAVKMFWQMQ-MSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVI 390 (519)
Q Consensus 312 ~~~a~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 390 (519)
..+-+.+.+.+. +.|......+.+--+.-+...|+..+|.++-.+.+- ||...|-.-+.+++..++|++-.++-
T Consensus 664 ~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 664 QMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 112222333332 123344444666667777788999999888776643 88888888899999999999988888
Q ss_pred HhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 048578 391 RNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLM 462 (519)
Q Consensus 391 ~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (519)
+... ++..|.-++.+|.+ .|+.++|.+++-+.-. +.....+|.+.|++.+|.++--+-
T Consensus 739 kskk---sPIGy~PFVe~c~~---~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 739 KSKK---SPIGYLPFVEACLK---QGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred hccC---CCCCchhHHHHHHh---cccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHHh
Confidence 8762 24456668889999 9999999988876322 226788999999999998865443
No 186
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.40 E-value=0.0027 Score=60.37 Aligned_cols=114 Identities=17% Similarity=0.071 Sum_probs=53.6
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC--CCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhh
Q 048578 225 GVEVNELTLVSVLSACANLGASELGKWVHEFVNKNC--IILNDKLGAALTDMYAKCGYIEEALRVFKIVLE----KNVCT 298 (519)
Q Consensus 225 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~ 298 (519)
+.+.+...+..+++.+....+.+.+..++....... ...-+.+..++++.|.+.|..+.++.++..=.. +|..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 334455666666666666666666666666655542 112222333444444444444444444433222 34444
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048578 299 WNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVL 338 (519)
Q Consensus 299 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 338 (519)
++.++..+.+.|++..|.++...|...+...+..|+..-+
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l 180 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALAL 180 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHH
Confidence 4444444444444444444444444333333333333333
No 187
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.38 E-value=0.00012 Score=42.01 Aligned_cols=33 Identities=24% Similarity=0.494 Sum_probs=30.8
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHhcCCchHHHH
Q 048578 425 MERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGK 457 (519)
Q Consensus 425 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 457 (519)
++++++++|+|+.+|..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678999999999999999999999999999863
No 188
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.37 E-value=0.0069 Score=50.66 Aligned_cols=81 Identities=6% Similarity=-0.063 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHH
Q 048578 195 VVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEV--NELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALT 272 (519)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 272 (519)
...|..+...+...|++++|+..|++.......+ ...++..+..++...|++++|...++...... +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3455666666677777777777777776542222 12356666666677777777777776666543 22333444444
Q ss_pred HHHH
Q 048578 273 DMYA 276 (519)
Q Consensus 273 ~~~~ 276 (519)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
No 189
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.36 E-value=0.0096 Score=59.06 Aligned_cols=136 Identities=15% Similarity=0.120 Sum_probs=97.8
Q ss_pred CCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHcHHhcCCCCC-hhHHHHHHHHHHhc--------CChHHHHHHHH
Q 048578 326 GIKPDDVTLIAVLTACSHA-----GLIEKGKEIFYNMRRDYKVEPN-VKHYGCLVDLLCRA--------RLLDEAYEVIR 391 (519)
Q Consensus 326 g~~p~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------~~~~~A~~~~~ 391 (519)
+.+.+...|...+++.... ++.+.|..+|++..+ ..|+ ...|..+..++... .++..+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 4466778888888875432 347789999999987 2454 44555544444332 12344455554
Q ss_pred hC-C---CCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 392 NM-P---MEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 392 ~~-~---~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
+. . ...+...+..+.-.+.. .|++++|...+++++.++| +..+|..++.++...|+.++|.+.+++....+.
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~---~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALV---KGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 43 1 23345667766666666 7899999999999999999 478999999999999999999999999877665
Q ss_pred c
Q 048578 468 V 468 (519)
Q Consensus 468 ~ 468 (519)
.
T Consensus 485 ~ 485 (517)
T PRK10153 485 G 485 (517)
T ss_pred C
Confidence 4
No 190
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.35 E-value=0.048 Score=44.59 Aligned_cols=124 Identities=12% Similarity=-0.017 Sum_probs=67.1
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----ChhhHHH
Q 048578 227 EVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK-----NVCTWNS 301 (519)
Q Consensus 227 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~ 301 (519)
.|+...-..+..+....|+..+|...|++....-...|..+.-.+.++....++...|...++++.+- .+.....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 34444444555566666666666666666665555556666666666666666666666666555331 2334444
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 048578 302 IIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKE 352 (519)
Q Consensus 302 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 352 (519)
+...+...|.+.+|+..|+..... -|+...-......+.++|+.+++..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 555566666666666666665552 4444333223333445554444443
No 191
>PRK15331 chaperone protein SicA; Provisional
Probab=97.31 E-value=0.0025 Score=51.26 Aligned_cols=90 Identities=14% Similarity=0.002 Sum_probs=74.1
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 048578 372 CLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAK 449 (519)
Q Consensus 372 ~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 449 (519)
....-+...|++++|..+|+-+ -..| +..-|..|...+.. .+++++|...|..+..++++||+.+...+.+|...
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~---~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l 118 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL---KKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHh
Confidence 3445566889999999999887 3344 34445555555666 88999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHh
Q 048578 450 AQWDDAGKMRRLMKE 464 (519)
Q Consensus 450 g~~~~A~~~~~~m~~ 464 (519)
|+.+.|+..|+...+
T Consensus 119 ~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 119 RKAAKARQCFELVNE 133 (165)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999988876
No 192
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.31 E-value=0.0011 Score=45.55 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=30.9
Q ss_pred ccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHH
Q 048578 343 HAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAVLWG 403 (519)
Q Consensus 343 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~ 403 (519)
..|++++|+.+|+.+... .+-+...+..++.+|.+.|++++|.++++++ ...|+...|.
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 345566666666665552 2334445555566666666666666666655 4445544333
No 193
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.019 Score=49.53 Aligned_cols=138 Identities=17% Similarity=0.076 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcch-----hHHHH
Q 048578 196 VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILND-----KLGAA 270 (519)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ 270 (519)
...+.++.++.-.|.+.-....+.+.++...+.++.....+.+.-.+.||.+.|..+|+.+.+..-..+. .+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 3456777788888888888999999988876778888888999999999999999999988775433333 33334
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 048578 271 LTDMYAKCGYIEEALRVFKIVLEK---NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLI 335 (519)
Q Consensus 271 l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 335 (519)
....|.-.+++..|...|.+++.. ++..-|.-.-+....|+...|++.++.|... .|...+-+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 445566777888888888877664 4445555555556678888888888888774 45544443
No 194
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.29 E-value=0.0084 Score=46.25 Aligned_cols=92 Identities=16% Similarity=0.175 Sum_probs=64.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCC-ChhHHHHHHHHH
Q 048578 301 SIIGGLAIHGCGEEAVKMFWQMQMSGIKPDD--VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEP-NVKHYGCLVDLL 377 (519)
Q Consensus 301 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 377 (519)
....++-..|+.++|+.+|++....|..... ..+..+..++...|++++|..+|+.....+.-.+ +......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3455677788889999999988888766543 3677778888888999999999988877422111 222223345577
Q ss_pred HhcCChHHHHHHHHh
Q 048578 378 CRARLLDEAYEVIRN 392 (519)
Q Consensus 378 ~~~~~~~~A~~~~~~ 392 (519)
...|+.++|++.+-.
T Consensus 86 ~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 86 YNLGRPKEALEWLLE 100 (120)
T ss_pred HHCCCHHHHHHHHHH
Confidence 788888888877654
No 195
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.27 E-value=0.0038 Score=52.50 Aligned_cols=97 Identities=14% Similarity=0.172 Sum_probs=75.9
Q ss_pred HHHHhcC--CCCchhHHHHHHHHHHHc-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC------------
Q 048578 184 QLLFDQM--TEKNVVTWTAMINGHVKQ-----KNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLG------------ 244 (519)
Q Consensus 184 ~~~~~~~--~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~------------ 244 (519)
...|+.. ...+-.+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||+.+=+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 346777888888887654 677777888889999999999999999998876532
Q ss_pred ----ChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCC
Q 048578 245 ----ASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGY 280 (519)
Q Consensus 245 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 280 (519)
+.+.|.+++++|...|+.||..++..+++.+.+.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 556788999999999999999999998888866554
No 196
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.14 Score=47.49 Aligned_cols=84 Identities=10% Similarity=-0.029 Sum_probs=40.3
Q ss_pred HHcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC-hhHHHHHHHHHHhcCC
Q 048578 307 AIHGCGEEAVKMFWQMQMS---GIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN-VKHYGCLVDLLCRARL 382 (519)
Q Consensus 307 ~~~g~~~~a~~~~~~m~~~---g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 382 (519)
.+.|++..|.+.|.+.+.. .+.|+...|.....+..+.|+..+|+.-.+...+ +.+. +..|..-..++...++
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALEK 336 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666555432 2334444555555555556666666555555543 1111 1122222333444455
Q ss_pred hHHHHHHHHhC
Q 048578 383 LDEAYEVIRNM 393 (519)
Q Consensus 383 ~~~A~~~~~~~ 393 (519)
|++|.+-|++.
T Consensus 337 ~e~AV~d~~~a 347 (486)
T KOG0550|consen 337 WEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.021 Score=49.31 Aligned_cols=132 Identities=9% Similarity=0.022 Sum_probs=75.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCCHHHHHHH
Q 048578 334 LIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM--------PMEPNAVLWGSL 405 (519)
Q Consensus 334 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--------~~~p~~~~~~~l 405 (519)
.+.++......|.+.-....+.++.+ ..-+.++.....|++.-.+.|+.+.|...|+.. +++-+.......
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~-~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIK-YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHH-hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34444455555555555555555555 233344455555556666666666666666533 222222222222
Q ss_pred HHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 048578 406 LTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVK 469 (519)
Q Consensus 406 l~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 469 (519)
...+.- .+++..|...+.++...+|.++...+.-+-+..-.|+..+|.+.++.|.+....+
T Consensus 259 a~i~lg---~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLG---QNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhheec---ccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 233444 5677777777777777777777777766666666777777777777776655443
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.25 E-value=0.014 Score=45.05 Aligned_cols=104 Identities=21% Similarity=0.174 Sum_probs=61.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC--cchhHHHHHHHHHH
Q 048578 201 MINGHVKQKNYREGIDLFRKMRDSGVEVN--ELTLVSVLSACANLGASELGKWVHEFVNKNCII--LNDKLGAALTDMYA 276 (519)
Q Consensus 201 li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 276 (519)
+..++-..|+.++|+.+|++....|...+ ...+..+...+...|++++|..+++........ .+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44566677888888888888877775544 234555666677777777777777777654211 12223333344556
Q ss_pred hcCCHHHHHHHHhhcCCCChhhHHHHHH
Q 048578 277 KCGYIEEALRVFKIVLEKNVCTWNSIIG 304 (519)
Q Consensus 277 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~ 304 (519)
..|+.++|++.+-....++...|..-|.
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~ 114 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIR 114 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777766655444333333333333
No 199
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.25 E-value=0.25 Score=49.00 Aligned_cols=337 Identities=12% Similarity=0.036 Sum_probs=181.2
Q ss_pred CCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCC-CCcch------------HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 048578 59 DNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN-PSTFA------------FNTVIRGYAEAGLGHRGIQLYTQMIGN 125 (519)
Q Consensus 59 ~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~------------~~~ll~~~~~~g~~~~a~~~~~~m~~~ 125 (519)
.|.+..|..|....... -.++-|+..|-+... +.+.. -.+=+.+ --|.+++|.++|-+|-++
T Consensus 689 nPHprLWrllAe~Al~K---l~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drr 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFK---LALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRR 763 (1189)
T ss_pred CCchHHHHHHHHHHHHH---HhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchh
Confidence 56777787777665555 577788877766532 22111 1111222 247888999888887664
Q ss_pred CCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCc---hhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHH
Q 048578 126 GLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSV---IHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMI 202 (519)
Q Consensus 126 g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 202 (519)
+ ..+....+.|+.-.+++++..-++-..+ ...++.+...++....+++|.+.|..-.. . ...+
T Consensus 764 D---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--~---e~~~ 829 (1189)
T KOG2041|consen 764 D---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--T---ENQI 829 (1189)
T ss_pred h---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--h---HhHH
Confidence 3 3455566778888888877665422222 45678888888888888888888765432 1 1345
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHH
Q 048578 203 NGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIE 282 (519)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 282 (519)
.++.+..++++-+.+.+.+ +.+....-.+..++...|.-++|...+-+ .+.+ .+.+..|...+++.
T Consensus 830 ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~p------kaAv~tCv~LnQW~ 895 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLR---RSLP------KAAVHTCVELNQWG 895 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHh---ccCc------HHHHHHHHHHHHHH
Confidence 5666666666555554443 33444555566667777776666554422 2211 13345566667777
Q ss_pred HHHHHHhhcCCCChhhHH--------------HHHHHHHHcCChHHHHHHHHHHHH----CCCCCCHHHHHHHHHHHh--
Q 048578 283 EALRVFKIVLEKNVCTWN--------------SIIGGLAIHGCGEEAVKMFWQMQM----SGIKPDDVTLIAVLTACS-- 342 (519)
Q Consensus 283 ~a~~~~~~~~~~~~~~~~--------------~l~~~~~~~g~~~~a~~~~~~m~~----~g~~p~~~~~~~l~~~~~-- 342 (519)
+|.++-+...-|.+.+.- --|..+.+.|++-.|.+++.+|-+ ++.+|-..--..++.++.
T Consensus 896 ~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE 975 (1189)
T KOG2041|consen 896 EAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVE 975 (1189)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 777776665444332211 113344566666677777777643 333333321111111111
Q ss_pred -------------ccCcHHHHHHHHHHcHHh--cCCC------CChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCC
Q 048578 343 -------------HAGLIEKGKEIFYNMRRD--YKVE------PNVKHYGCLVDLLCRARLLDEAYEVIRNM----PMEP 397 (519)
Q Consensus 343 -------------~~g~~~~a~~~~~~~~~~--~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~p 397 (519)
..|..++|..+++...-. ..+. ....+|..|..-....|.++.|+..--.+ .+-|
T Consensus 976 ~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lp 1055 (1189)
T KOG2041|consen 976 NHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLP 1055 (1189)
T ss_pred HHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCC
Confidence 124444444433322110 0000 12334445555556678888887654433 4445
Q ss_pred CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhh
Q 048578 398 NAVLWGSLLTACASADDGANVELAEIAMERLIKL 431 (519)
Q Consensus 398 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 431 (519)
....|..+.-+.+. ...+-...+.|-++...
T Consensus 1056 P~eiySllALaaca---~raFGtCSKAfmkLe~~ 1086 (1189)
T KOG2041|consen 1056 PAEIYSLLALAACA---VRAFGTCSKAFMKLEAF 1086 (1189)
T ss_pred HHHHHHHHHHHHhh---hhhhhhhHHHHHHHHhh
Confidence 56666665555444 33444444444444433
No 200
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.24 E-value=0.00093 Score=46.17 Aligned_cols=64 Identities=23% Similarity=0.255 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHccccCCC-CHHHHHHHHHHHHhhCC
Q 048578 367 VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN-AVLWGSLLTACASADDGA-NVELAEIAMERLIKLEP 433 (519)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~-~~~~a~~~~~~~~~~~p 433 (519)
...|..+...+...|++++|+..|++. .+.|+ ...|..+..++.. .| ++++|.+.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~---~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK---LGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH---TTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---hCccHHHHHHHHHHHHHcCc
Confidence 456666677777777777777777666 44453 3355556566666 66 57777777777777765
No 201
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.24 E-value=0.04 Score=51.40 Aligned_cols=161 Identities=18% Similarity=0.064 Sum_probs=93.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCC-------ChhhHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048578 268 GAALTDMYAKCGYIEEALRVFKIVLEK-------NVCTWNSIIGGLAI---HGCGEEAVKMFWQMQMSGIKPDDVTLIAV 337 (519)
Q Consensus 268 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 337 (519)
.-.++-+|....+++..+++++.+... ....-....-++.+ .|+.++|++++..+....-.++..+|..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 334555577777777777777776543 11222233445556 78888888888886655557777788877
Q ss_pred HHHHhc---------cCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChH----HHHHHH---HhC-------C
Q 048578 338 LTACSH---------AGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLD----EAYEVI---RNM-------P 394 (519)
Q Consensus 338 ~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~A~~~~---~~~-------~ 394 (519)
.+.|-. ....++|+..|.+.-+ +.|+..+=-.++..+...|.-. +..++- ... .
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 776532 2236667776665533 4454433223333333333211 111211 111 1
Q ss_pred CCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 395 MEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 395 ~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
-..+-..+..++.++.- .|+.+.|.+.++++.+..|+
T Consensus 301 ~~~dYWd~ATl~Ea~vL---~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVL---AGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccccHHHHHHHHHHHHH---cCCHHHHHHHHHHHhhcCCc
Confidence 22455667777777777 78888888888888887655
No 202
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.22 E-value=0.0046 Score=52.05 Aligned_cols=88 Identities=17% Similarity=0.164 Sum_probs=55.3
Q ss_pred CCCChhhHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----------------cHHHH
Q 048578 292 LEKNVCTWNSIIGGLAI-----HGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAG----------------LIEKG 350 (519)
Q Consensus 292 ~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g----------------~~~~a 350 (519)
..++..+|..++..|.+ .|..+-....++.|.+-|+.-|..+|+.|++.+=+.. +-+-|
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~ 122 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECA 122 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHH
Confidence 34566677777777664 4677778888888888899999999999888765421 23334
Q ss_pred HHHHHHcHHhcCCCCChhHHHHHHHHHHhc
Q 048578 351 KEIFYNMRRDYKVEPNVKHYGCLVDLLCRA 380 (519)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 380 (519)
+++++.|.. +|+-||.+++..+++.+++.
T Consensus 123 i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 123 IDLLEQMEN-NGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred HHHHHHHHH-cCCCCcHHHHHHHHHHhccc
Confidence 444444444 34444444444444444433
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.19 E-value=0.0031 Score=56.46 Aligned_cols=50 Identities=12% Similarity=0.060 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHHHhhCCCC---CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 415 GANVELAEIAMERLIKLEPFN---DGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
.|+++.|...|+.+++..|++ +.++..++.++...|++++|.++++++.+
T Consensus 193 ~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 193 KGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred cCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555555555444432 23333344445455555555555555444
No 204
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.16 E-value=0.053 Score=48.19 Aligned_cols=172 Identities=11% Similarity=0.036 Sum_probs=94.7
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC--Ch-h---hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--
Q 048578 272 TDMYAKCGYIEEALRVFKIVLEK--NV-C---TWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSH-- 343 (519)
Q Consensus 272 ~~~~~~~g~~~~a~~~~~~~~~~--~~-~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~-- 343 (519)
...+...|++++|.+.|+.+... +. . ..-.++.++.+.+++++|...+++..+....-....+...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence 34445567777777777666442 11 1 1233456667777777777777777664211111222222222221
Q ss_pred c---------------Cc---HHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 048578 344 A---------------GL---IEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSL 405 (519)
Q Consensus 344 ~---------------g~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~l 405 (519)
. .| ...|...|+.+.+.+ |+. .-.++|...+..+....-... ..+
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S-------------~ya~~A~~rl~~l~~~la~~e-~~i 181 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNS-------------QYTTDATKRLVFLKDRLAKYE-LSV 181 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCC-------------hhHHHHHHHHHHHHHHHHHHH-HHH
Confidence 1 11 234445555555531 322 112333332222210000111 123
Q ss_pred HHHHccccCCCCHHHHHHHHHHHHhhCCCC---CchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 406 LTACASADDGANVELAEIAMERLIKLEPFN---DGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 406 l~~~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
...|.+ .|.+..|..-++.+++.-|+. +.+...++.+|...|..++|..+...+.
T Consensus 182 a~~Y~~---~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 182 AEYYTK---RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHH---cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 445777 889999999999999988774 4566788889999999999998876654
No 205
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.01 E-value=0.36 Score=46.53 Aligned_cols=417 Identities=10% Similarity=0.070 Sum_probs=232.3
Q ss_pred CcccHHHHHHhccCc--hHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCC--CCcchHHHHHH
Q 048578 29 KSHHHLPLLQKCTHL--VQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN--PSTFAFNTVIR 104 (519)
Q Consensus 29 ~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~ 104 (519)
|..+|..+++-...- ...+...+++... ++..+..|..-+..-.+. ++++..+++|.+... -+...|...|+
T Consensus 19 di~sw~~lire~qt~~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~s---kdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQPIDKVRETYEQLVNV-FPSSPRAWKLYIERELAS---KDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccCCHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 677899999876433 3336667776543 566777888888888777 999999999999843 56777888777
Q ss_pred HHHhc-CChhH----HHHHHHHHH-hCCCCCCcc-hHHHHHHHH---cCccc------hHHHHHHHHHhCCCCCc---hh
Q 048578 105 GYAEA-GLGHR----GIQLYTQMI-GNGLDPDSF-TYPILLKAC---GDLRQ------VKGVHSLVVKSKDFNSV---IH 165 (519)
Q Consensus 105 ~~~~~-g~~~~----a~~~~~~m~-~~g~~p~~~-~~~~ll~~~---~~~~~------~~~~~~~~~~~~~~~~~---~~ 165 (519)
.--+. |+... ..+.|+-.. +.|..+-.. .|+..+.-+ -..|. ...+.+...+.- ..|- ..
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral-~tPm~nlEk 173 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRAL-VTPMHNLEK 173 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHh-cCccccHHH
Confidence 55432 33322 233333333 335444332 344433322 22232 333333333332 2221 11
Q ss_pred HHHH------HHHH-------HHhcCChHHHHHHHhcCCC---------Cc------------hhHHHHHHHHHHHcC--
Q 048578 166 SLTR------LITF-------YCNFGDVKSAQLLFDQMTE---------KN------------VVTWTAMINGHVKQK-- 209 (519)
Q Consensus 166 ~~~~------l~~~-------~~~~g~~~~A~~~~~~~~~---------~~------------~~~~~~li~~~~~~~-- 209 (519)
.|+. -|+. --+...+..|.++++++.. |. ...|-.+|.-=-..+
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 1211 1111 1122345556666655431 00 112333332111110
Q ss_pred ----C--hhHHHHHHHHHH-hCCCCCCHHH-HHHH----HHHHhccCCh-------HHHHHHHHHHHHcCCCcchhHHHH
Q 048578 210 ----N--YREGIDLFRKMR-DSGVEVNELT-LVSV----LSACANLGAS-------ELGKWVHEFVNKNCIILNDKLGAA 270 (519)
Q Consensus 210 ----~--~~~a~~~~~~m~-~~~~~~~~~~-~~~l----l~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~ 270 (519)
. .....-++++.. -.+..|+..- +... -+.+...|+. +++..+++.....-...+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 011122222221 1123332211 1111 1122333333 334444444443322333333333
Q ss_pred HHHHHHhc---CCHHHHHHHHhhcCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHh
Q 048578 271 LTDMYAKC---GYIEEALRVFKIVLE----KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKP-DDVTLIAVLTACS 342 (519)
Q Consensus 271 l~~~~~~~---g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~ 342 (519)
+.+.--.. ...+.....++++.. .-..+|-..+....+...+..|..+|.+..+.+..+ .....++++.-+|
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c 413 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC 413 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh
Confidence 32221111 124444455554432 234578888888889999999999999999998887 5557778887665
Q ss_pred ccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHccccCCCC
Q 048578 343 HAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM---PMEPN--AVLWGSLLTACASADDGAN 417 (519)
Q Consensus 343 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~~~~~~ 417 (519)
+++.+-|.++|+.-.+.+|- ++.--...++-+...++-..|..+|++. ++.|+ ...|..+|..-.. .|+
T Consensus 414 -skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~---vGd 487 (656)
T KOG1914|consen 414 -SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESN---VGD 487 (656)
T ss_pred -cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHh---ccc
Confidence 57889999999998885544 4445567888889999999999999998 34554 4699999999888 999
Q ss_pred HHHHHHHHHHHHhhCCCC----CchHHHHHHHHHhcCCchHHH
Q 048578 418 VELAEIAMERLIKLEPFN----DGNYVLMSNIYAAKAQWDDAG 456 (519)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~ 456 (519)
...+.++-++....-|.+ ...-..+++-|.-.+.+..-.
T Consensus 488 L~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~ 530 (656)
T KOG1914|consen 488 LNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSL 530 (656)
T ss_pred HHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccH
Confidence 999999988887666521 123345556666555554333
No 206
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.97 E-value=0.074 Score=40.83 Aligned_cols=140 Identities=12% Similarity=0.070 Sum_probs=91.9
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 048578 307 AIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEA 386 (519)
Q Consensus 307 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 386 (519)
.-.|.+++..++..+... ..+..-++.+|--....-+-+-..++++.+-+-+.+. .+|+....
T Consensus 13 ildG~V~qGveii~k~v~---Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVN---SSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHH---HS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcC---cCCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 446888888888888876 3466677777776666667777777777776533332 24445555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 387 YEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 387 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
...+-.++ .+.......+..... .|.-+.-.+++..+.+.+..+|.....++.+|.+.|+..++.+++++.-++|
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~---~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVK---QGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHH---TT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhc--chHHHHHHHHHHHHH---hccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 55544443 234455666777888 8899999999999887666679999999999999999999999999999998
Q ss_pred Cc
Q 048578 467 IV 468 (519)
Q Consensus 467 ~~ 468 (519)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 75
No 207
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.94 E-value=0.062 Score=52.52 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=15.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHC
Q 048578 304 GGLAIHGCGEEAVKMFWQMQMS 325 (519)
Q Consensus 304 ~~~~~~g~~~~a~~~~~~m~~~ 325 (519)
.+|.+.|+-.+|.++++++...
T Consensus 825 kAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHHhcchHHHHHHHHHhhhh
Confidence 3556777777888887776543
No 208
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.89 E-value=0.66 Score=47.65 Aligned_cols=323 Identities=10% Similarity=-0.000 Sum_probs=149.1
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 048578 107 AEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLL 186 (519)
Q Consensus 107 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 186 (519)
.+.|++..+..+...+....+ ..-..|..+...+. .....++..++.+..+.+.....-...+..+.+.+++.....+
T Consensus 44 ~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~ 121 (644)
T PRK11619 44 WDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAF 121 (644)
T ss_pred HHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHh
Confidence 355666666666555532211 11112322222221 1235566666666654444555555566667778888888874
Q ss_pred HhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchh
Q 048578 187 FDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDK 266 (519)
Q Consensus 187 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 266 (519)
+..- ..+...-.....+....|+.++|......+-..| ...+.....++..+.+.|.+... .
T Consensus 122 ~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~----------------d 183 (644)
T PRK11619 122 SPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPL----------------A 183 (644)
T ss_pred cCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHH----------------H
Confidence 4332 2345555667777888888887877776665544 22344555555555544433221 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--H-HHHHHHHHhc
Q 048578 267 LGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDV--T-LIAVLTACSH 343 (519)
Q Consensus 267 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~-~~~l~~~~~~ 343 (519)
++.- +......|+...|..+...+..........++..+. +...+...+.. +.|+.. . ....+.-+ .
T Consensus 184 ~w~R-~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~---~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rl-a 253 (644)
T PRK11619 184 YLER-IRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQN---DPNTVETFART-----TGPTDFTRQMAAVAFASV-A 253 (644)
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHH---CHHHHHHHhhc-----cCCChhhHHHHHHHHHHH-H
Confidence 2211 233334455555555555442211111222222221 12222221111 112211 1 11111112 2
Q ss_pred cCcHHHHHHHHHHcHHhcCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHccccCCCCHHH
Q 048578 344 AGLIEKGKEIFYNMRRDYKVEPNV--KHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAVLWGSLLTACASADDGANVEL 420 (519)
Q Consensus 344 ~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~ 420 (519)
..+.+.|...+.......++.+.. ..+..++......+..++|...++.. ....+......-+..... .++.+.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~---~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALG---TGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHH---ccCHHH
Confidence 234456666666554433333222 22233333333332245555555554 111233333333333334 556666
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 048578 421 AEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLM 462 (519)
Q Consensus 421 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (519)
+...+..+-......+.-..-+++++...|+.++|...|++.
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666554333334455556666666666666666666665
No 209
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.87 E-value=0.064 Score=52.41 Aligned_cols=90 Identities=14% Similarity=0.079 Sum_probs=47.3
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCC-----------CchhHHHHHHHHHHHcCCh--hHHHHHHHHHHhCCCCCC
Q 048578 163 VIHSLTRLITFYCNFGDVKSAQLLFDQMTE-----------KNVVTWTAMINGHVKQKNY--REGIDLFRKMRDSGVEVN 229 (519)
Q Consensus 163 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~~~ 229 (519)
....+.+-+..|...|.+++|.++----.- -+...++..=.+|.+..+. -+...-+++++++|-.|+
T Consensus 555 ~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~ 634 (1081)
T KOG1538|consen 555 VEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN 634 (1081)
T ss_pred ccccccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch
Confidence 334444555667788888888654211100 1222344444555554442 333444566666776666
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHH
Q 048578 230 ELTLVSVLSACANLGASELGKWVHEF 255 (519)
Q Consensus 230 ~~~~~~ll~~~~~~~~~~~a~~~~~~ 255 (519)
.... ...|+-.|.+.+|.++|.+
T Consensus 635 ~iLl---A~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 635 DLLL---ADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHH---HHHHHhhhhHHHHHHHHHH
Confidence 6432 3345556667777666544
No 210
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.81 E-value=0.044 Score=49.13 Aligned_cols=101 Identities=15% Similarity=0.062 Sum_probs=63.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHH
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEP-NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN----AVLWGSLL 406 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~----~~~~~~ll 406 (519)
.|...+..+.+.|++++|...|+.+.+.+.-.+ ....+..+..+|...|++++|...|+.+ ...|+ ...+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 444444444556777777777777776421111 1245556777777778888887777776 22232 22344444
Q ss_pred HHHccccCCCCHHHHHHHHHHHHhhCCCCC
Q 048578 407 TACASADDGANVELAEIAMERLIKLEPFND 436 (519)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (519)
..+.. .|+.+.|...++++++..|++.
T Consensus 225 ~~~~~---~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQD---KGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHH---cCCHHHHHHHHHHHHHHCcCCH
Confidence 45556 7888888888888888888754
No 211
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.78 E-value=0.0035 Score=50.98 Aligned_cols=68 Identities=22% Similarity=0.320 Sum_probs=53.1
Q ss_pred HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH-----hCCCccCC
Q 048578 401 LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMK-----ERNIVKNP 471 (519)
Q Consensus 401 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~ 471 (519)
....++..+.. .|+++.|...+++++..+|.+..+|..++.+|...|+..+|.+.|+++. +.|+.|.+
T Consensus 64 ~~~~l~~~~~~---~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLE---AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHH---TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHh---ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 44556666777 8999999999999999999999999999999999999999999999885 55776643
No 212
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.77 E-value=0.0067 Score=57.25 Aligned_cols=62 Identities=19% Similarity=0.034 Sum_probs=30.4
Q ss_pred HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCch---HHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 400 VLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGN---YVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 400 ~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
..++.+..+|.. .|++++|...++++++++|++..+ |..++.+|...|+.++|+..+++..+
T Consensus 76 ~a~~NLG~AL~~---lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 76 EDAVNLGLSLFS---KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444 455555555555555555544422 45555555555555555555555444
No 213
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.76 E-value=0.019 Score=44.83 Aligned_cols=53 Identities=17% Similarity=0.227 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHH
Q 048578 326 GIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLC 378 (519)
Q Consensus 326 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (519)
...|+..+..+++.+|+..|++..|.++++...+.++++-+...|..|++-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 45677888888888888888888888888888887787777777777776443
No 214
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.69 E-value=0.0033 Score=38.68 Aligned_cols=41 Identities=20% Similarity=0.290 Sum_probs=35.1
Q ss_pred HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 048578 401 LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSN 444 (519)
Q Consensus 401 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (519)
++..+..+|.. .|++++|++.++++++.+|+|+.++..++.
T Consensus 3 ~~~~la~~~~~---~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRR---LGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHH---cCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 56677788888 999999999999999999999888887764
No 215
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.67 E-value=0.0065 Score=42.42 Aligned_cols=61 Identities=21% Similarity=0.294 Sum_probs=36.2
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCch
Q 048578 375 DLLCRARLLDEAYEVIRNM-PMEPNA-VLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGN 438 (519)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (519)
..|.+.+++++|.++++.+ ...|+. ..+......+.. .|++++|.+.++++++..|+++..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~---~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQ---LGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH---hccHHHHHHHHHHHHHHCCCcHHH
Confidence 4556666666666666666 444433 344444445556 666777777777777666654433
No 216
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.068 Score=47.58 Aligned_cols=103 Identities=17% Similarity=0.124 Sum_probs=77.2
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCCCCHH-HH
Q 048578 328 KPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRAR---LLDEAYEVIRNM-PMEPNAV-LW 402 (519)
Q Consensus 328 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~-~~~p~~~-~~ 402 (519)
+-|...|..|..+|...|+.+.|..-|.+..+ -.++++..+..+..++.... ...++.++|+++ ..+|+.. +.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 44667899999999999999999999998887 34456666667776665432 456788888888 6677555 44
Q ss_pred HHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC
Q 048578 403 GSLLTACASADDGANVELAEIAMERLIKLEPFN 435 (519)
Q Consensus 403 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (519)
..|...+.. .|++.+|...++.+++..|.+
T Consensus 231 ~lLA~~afe---~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 231 SLLAFAAFE---QGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHH---cccHHHHHHHHHHHHhcCCCC
Confidence 444455777 889999999999999988764
No 217
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.64 E-value=0.63 Score=43.99 Aligned_cols=367 Identities=11% Similarity=0.042 Sum_probs=188.7
Q ss_pred CChHHHHHHHhcCCC------------------CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC----CCcchHHH
Q 048578 79 SQIAYAHLVFNQIIN------------------PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLD----PDSFTYPI 136 (519)
Q Consensus 79 ~~~~~A~~~~~~~~~------------------~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~----p~~~~~~~ 136 (519)
+.+..|.+.+..-.. +|-.-=+..+.++.+.|++.++..++++|...=++ -+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 788888877754421 11122245667888999999999999988875333 57777777
Q ss_pred HHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHc--CChhHH
Q 048578 137 LLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQ--KNYREG 214 (519)
Q Consensus 137 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~a 214 (519)
++-.++++= +-.+.+....+.-+. |--++-.|.+.=+.-++.. +++. -|.......++....-. .+..--
T Consensus 173 ~vlmlsrSY-----fLEl~e~~s~dl~pd-yYemilfY~kki~~~d~~~-Y~k~-~peeeL~s~imqhlfi~p~e~l~~~ 244 (549)
T PF07079_consen 173 AVLMLSRSY-----FLELKESMSSDLYPD-YYEMILFYLKKIHAFDQRP-YEKF-IPEEELFSTIMQHLFIVPKERLPPL 244 (549)
T ss_pred HHHHHhHHH-----HHHHHHhcccccChH-HHHHHHHHHHHHHHHhhch-HHhh-CcHHHHHHHHHHHHHhCCHhhccHH
Confidence 555554331 111111110111111 2222333322111101000 0000 02222222333322211 122233
Q ss_pred HHHHHHHHhCCCCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHcCCC----cchhHHHHHHHHHHhcCCHHHHHHHHh
Q 048578 215 IDLFRKMRDSGVEVNELT-LVSVLSACANLGASELGKWVHEFVNKNCII----LNDKLGAALTDMYAKCGYIEEALRVFK 289 (519)
Q Consensus 215 ~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~ 289 (519)
.++++.....-+.|+... ...+...+.+ +.+++..+.+.+....+. .-..++..++....+.++...|.+.+.
T Consensus 245 mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~ 322 (549)
T PF07079_consen 245 MQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLA 322 (549)
T ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344444444445555432 2233333333 555555555555443221 123466777777788888888777765
Q ss_pred hcC--CCChhh-------HHHHHHHHH----HcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHH---HHhccCc-HHHHH
Q 048578 290 IVL--EKNVCT-------WNSIIGGLA----IHGCGEEAVKMFWQMQMSGIKPDDV-TLIAVLT---ACSHAGL-IEKGK 351 (519)
Q Consensus 290 ~~~--~~~~~~-------~~~l~~~~~----~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~---~~~~~g~-~~~a~ 351 (519)
-+. +|+... -..+-+..+ ..-+...-+.+|+.....++ |.. ....|+. -+-+.|. -++|.
T Consensus 323 lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekal 400 (549)
T PF07079_consen 323 LLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKAL 400 (549)
T ss_pred HHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHH
Confidence 442 332221 111112222 11122334455555554432 222 2222332 3455555 78889
Q ss_pred HHHHHcHHhcCCCCChhHHHHHH----HHHHhc---CChHHH---HHHHHhCCCCC----CHHHHHHHHHH--HccccCC
Q 048578 352 EIFYNMRRDYKVEPNVKHYGCLV----DLLCRA---RLLDEA---YEVIRNMPMEP----NAVLWGSLLTA--CASADDG 415 (519)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~---~~~~~A---~~~~~~~~~~p----~~~~~~~ll~~--~~~~~~~ 415 (519)
.+++.+.+- -+-|..+-|.+. ..|... ..+.+- ....++.|+.| +...-|.|..+ +.. +
T Consensus 401 nLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys---q 475 (549)
T PF07079_consen 401 NLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS---Q 475 (549)
T ss_pred HHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh---c
Confidence 998888772 223333333222 222221 122222 22334447666 34466677766 455 8
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 416 ANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
|++.++.-.-.-+.+..| ++.+|..++.++....++++|+.++..+.
T Consensus 476 gey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 476 GEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred ccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 999999999989999999 69999999999999999999999998753
No 218
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.64 E-value=0.85 Score=45.47 Aligned_cols=285 Identities=11% Similarity=0.081 Sum_probs=133.3
Q ss_pred CChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----cchHHHHHHHHcCccchHHHHHHH
Q 048578 79 SQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPD----SFTYPILLKACGDLRQVKGVHSLV 154 (519)
Q Consensus 79 ~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~~~~~~ 154 (519)
|++++|++++-++..+|. .|..+.+.|++-.+.++++.- |-..| ...|+.+-..+......+++.+..
T Consensus 748 g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred cchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999988877665 366677777777766665421 11111 123444444444444444444444
Q ss_pred HHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 048578 155 VKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLV 234 (519)
Q Consensus 155 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 234 (519)
...+ -....+.++.+..++++-+.+-+.+++. ....-.+..++...|.-++|.+.|-+-- .| .
T Consensus 820 ~~~~-------~~e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----k 882 (1189)
T KOG2041|consen 820 SYCG-------DTENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----K 882 (1189)
T ss_pred Hhcc-------chHhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----H
Confidence 4433 1123444555555555555555544432 2223344555555555555555443221 11 1
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCC-----------CcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh-------
Q 048578 235 SVLSACANLGASELGKWVHEFVNKNCI-----------ILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNV------- 296 (519)
Q Consensus 235 ~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------- 296 (519)
..+..|...++|.+|.++-+...-..+ -.+..+. --|..+.+.|+.-+|-+++.+|.++..
T Consensus 883 aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~-eaIe~~Rka~~~~daarll~qmae~e~~K~~p~l 961 (1189)
T KOG2041|consen 883 AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHM-EAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYL 961 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchH-HHHHHhhhcccchhHHHHHHHHhHHHhhccCCHH
Confidence 223344444445444443322110000 0000000 123445555666566666666633211
Q ss_pred -----hhHHHH-HHHH----------HHcCChHHHHHHHHHHHHC-------CCCCCHH--HHHHHHHHHhccCcHHHHH
Q 048578 297 -----CTWNSI-IGGL----------AIHGCGEEAVKMFWQMQMS-------GIKPDDV--TLIAVLTACSHAGLIEKGK 351 (519)
Q Consensus 297 -----~~~~~l-~~~~----------~~~g~~~~a~~~~~~m~~~-------g~~p~~~--~~~~l~~~~~~~g~~~~a~ 351 (519)
....++ +.-+ -+.|..++|..+++...-. +.--... .|..|.+--...|..+.|.
T Consensus 962 r~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al 1041 (1189)
T KOG2041|consen 962 RLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDAL 1041 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHH
Confidence 111111 1111 1345566666554443211 0011122 3344444455567777777
Q ss_pred HHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 048578 352 EIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEV 389 (519)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 389 (519)
+.--.+..-..+-|....|..+.-+-+..+.+.-.-+.
T Consensus 1042 ~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKA 1079 (1189)
T KOG2041|consen 1042 QTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKA 1079 (1189)
T ss_pred HHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHH
Confidence 65544443224557778888777666655544443333
No 219
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.64 E-value=0.054 Score=43.94 Aligned_cols=71 Identities=17% Similarity=0.240 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHH----hcCCCCChhH
Q 048578 298 TWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRR----DYKVEPNVKH 369 (519)
Q Consensus 298 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~ 369 (519)
+...++..+...|++++|..+++.+.... +-+...+..+|.++...|+...|.++|+.+.+ +.|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34445556666777777777777776643 44555777777777777777777777766543 3466666554
No 220
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.42 E-value=0.18 Score=43.59 Aligned_cols=49 Identities=12% Similarity=0.049 Sum_probs=36.9
Q ss_pred HHHHHccccCCCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHHhcCCchHHH
Q 048578 405 LLTACASADDGANVELAEIAMERLIKLEPFND---GNYVLMSNIYAAKAQWDDAG 456 (519)
Q Consensus 405 ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~ 456 (519)
+...|.+ .|.+..|..-++.+++.-|+++ .+...++.+|.+.|..+.|.
T Consensus 147 ia~~Y~~---~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYK---RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHC---TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHH---cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 3455778 8999999999999999988843 45678888899999877444
No 221
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.42 E-value=0.024 Score=52.22 Aligned_cols=128 Identities=11% Similarity=-0.036 Sum_probs=85.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHH----cCC-CcchhHHHHHHHHHHhcCCHHHHHHHHhhc-------CCCC--hh
Q 048578 232 TLVSVLSACANLGASELGKWVHEFVNK----NCI-ILNDKLGAALTDMYAKCGYIEEALRVFKIV-------LEKN--VC 297 (519)
Q Consensus 232 ~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~~--~~ 297 (519)
.|..+.+.|.-.|+++.|....+.-+. -|. ......+..+.++++-.|+++.|.+.|+.. ..+. ..
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 466666666777899988776554322 221 223456677888889999999998888754 2222 33
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHH
Q 048578 298 TWNSIIGGLAIHGCGEEAVKMFWQMQM----SG-IKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRR 359 (519)
Q Consensus 298 ~~~~l~~~~~~~g~~~~a~~~~~~m~~----~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (519)
....|...|.-..++++|+.++.+-.. .+ ..-....+.+|..++...|..++|+.+.+...+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 455677777777788888887766321 11 223445788888899999999888887765544
No 222
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.41 E-value=0.55 Score=40.57 Aligned_cols=83 Identities=14% Similarity=0.108 Sum_probs=42.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC-hhHHHHHHHHHH
Q 048578 300 NSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN-VKHYGCLVDLLC 378 (519)
Q Consensus 300 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 378 (519)
..++.-|-...-..+|...+..+.+. . ..--..+..-|.+.|.+..|..-++.+.+++.-.+. ......++.+|.
T Consensus 114 ~~li~~yP~S~y~~~A~~~l~~l~~~---l-a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~ 189 (203)
T PF13525_consen 114 EELIKRYPNSEYAEEAKKRLAELRNR---L-AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYY 189 (203)
T ss_dssp HHHHHH-TTSTTHHHHHHHHHHHHHH---H-HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCchHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 33444444444445555444444321 0 011123455677778888888888877775322221 234456677777
Q ss_pred hcCChHHH
Q 048578 379 RARLLDEA 386 (519)
Q Consensus 379 ~~~~~~~A 386 (519)
+.|..+.|
T Consensus 190 ~l~~~~~a 197 (203)
T PF13525_consen 190 KLGLKQAA 197 (203)
T ss_dssp HTT-HHHH
T ss_pred HhCChHHH
Confidence 77776644
No 223
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.055 Score=50.08 Aligned_cols=95 Identities=18% Similarity=0.157 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 048578 368 KHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNI 445 (519)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (519)
.++..+.-+|.+.+++.+|++...+. ...| |....-.=..++.. .|+++.|+..|+++.+++|.|..+-..|+.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~---~~e~~~A~~df~ka~k~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLA---LGEYDLARDDFQKALKLEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh---hccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 46778888999999999999988887 4454 55566666778888 9999999999999999999999998899888
Q ss_pred HHhcCCchHH-HHHHHHHHhC
Q 048578 446 YAAKAQWDDA-GKMRRLMKER 465 (519)
Q Consensus 446 ~~~~g~~~~A-~~~~~~m~~~ 465 (519)
-.+..++++. .++|..|-..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 8877766655 6788888543
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.23 E-value=0.0074 Score=42.81 Aligned_cols=61 Identities=8% Similarity=0.052 Sum_probs=42.6
Q ss_pred HHHHHHHHHccccCCCCHHHHHHHHHHHHhh----CCC---CCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 401 LWGSLLTACASADDGANVELAEIAMERLIKL----EPF---NDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 401 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
+++.+...|.. .|++++|...++++++. +++ -..++..++.+|...|++++|++++++..+
T Consensus 7 ~~~~la~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRE---LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55666666777 77777777777777643 222 245677888888888888888888887643
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.19 E-value=0.0095 Score=42.23 Aligned_cols=59 Identities=12% Similarity=0.104 Sum_probs=26.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHh---cCC-CCC-hhHHHHHHHHHHhcCChHHHHHHHH
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRD---YKV-EPN-VKHYGCLVDLLCRARLLDEAYEVIR 391 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~ 391 (519)
+++.+...|...|++++|+..|++..+. .|- .|+ ..++..+..+|...|++++|++.++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555555555555555555555554431 010 011 2334444444444444444444444
No 226
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.16 E-value=0.068 Score=41.72 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=31.8
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 048578 362 KVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM----PMEPNAVLWGSLLTAC 409 (519)
Q Consensus 362 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~p~~~~~~~ll~~~ 409 (519)
...|+..+..+++.+|+..|++..|+++++.. +++.+..+|..|+.-+
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 44566677777777777777777777766655 5555566677666653
No 227
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.11 E-value=1.8 Score=43.68 Aligned_cols=108 Identities=15% Similarity=0.057 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 048578 267 LGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGL 346 (519)
Q Consensus 267 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 346 (519)
+.+--+.-+...|+..+|.++-.+..-||-..|-.-+.+++..+++++-+++-+.++ ...-|..+..+|.+.|+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGN 759 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhccc
Confidence 334444555566777777777766666666666666667777777666655544433 12345556666777777
Q ss_pred HHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 048578 347 IEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVI 390 (519)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 390 (519)
.++|.+++-+... .+ -...+|.+.|++.+|.++-
T Consensus 760 ~~EA~KYiprv~~---l~-------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 760 KDEAKKYIPRVGG---LQ-------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHhhhhhccCC---hH-------HHHHHHHHhccHHHHHHHH
Confidence 7777766655422 11 3455666666666665544
No 228
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.01 E-value=0.36 Score=47.62 Aligned_cols=113 Identities=17% Similarity=0.109 Sum_probs=57.8
Q ss_pred CcHHHHHHHHHHcHHhcCCCCChhHHH-HHHHHHHhcCChHHHHHHHHhC-CCC-----CCHHHHHHHHHHHccccCCCC
Q 048578 345 GLIEKGKEIFYNMRRDYKVEPNVKHYG-CLVDLLCRARLLDEAYEVIRNM-PME-----PNAVLWGSLLTACASADDGAN 417 (519)
Q Consensus 345 g~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~-~~~-----p~~~~~~~ll~~~~~~~~~~~ 417 (519)
.+.+.|.++++.+.+. -|+...|. .-.+.+...|++++|++.|++. ..+ .....+--+.-.+.. ..+
T Consensus 247 ~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~---~~~ 320 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF---QHD 320 (468)
T ss_pred CCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH---Hch
Confidence 3455566666666552 24433333 2234455566666666666654 101 111222223333444 556
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHH-HHHhcCCc-------hHHHHHHHHHH
Q 048578 418 VELAEIAMERLIKLEPFNDGNYVLMSN-IYAAKAQW-------DDAGKMRRLMK 463 (519)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~-~~~~~g~~-------~~A~~~~~~m~ 463 (519)
+++|...+.++.+.+..+...|..+.- ++...|+. ++|.++|+++.
T Consensus 321 w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 321 WEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 777777777766666655444443333 34455666 66666666654
No 229
>PRK11906 transcriptional regulator; Provisional
Probab=95.85 E-value=0.16 Score=48.29 Aligned_cols=144 Identities=12% Similarity=0.048 Sum_probs=78.8
Q ss_pred ChHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHhcc---------CcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHh
Q 048578 311 CGEEAVKMFWQMQM-SGIKPDDV-TLIAVLTACSHA---------GLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCR 379 (519)
Q Consensus 311 ~~~~a~~~~~~m~~-~g~~p~~~-~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (519)
..+.|+.+|.+... ..+.|+-. .|..+..++... .+..+|.+.-++..+ --+-|......+..++.-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Confidence 34567777777762 22455543 555555544322 223445555555554 223455555566666666
Q ss_pred cCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCc--hHHHHHHHHHhcCCchHH
Q 048578 380 ARLLDEAYEVIRNM-PMEPNAV-LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDG--NYVLMSNIYAAKAQWDDA 455 (519)
Q Consensus 380 ~~~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~A 455 (519)
.++++.|..+|++. .+.||.. +|......+.. .|+.++|.+.++++++++|.-.. .....++.|+.. .+++|
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~---~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~ 426 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH---NEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNN 426 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH---cCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhh
Confidence 66777777777776 5566543 33333333444 66777777777777777776332 222333345544 35666
Q ss_pred HHHHH
Q 048578 456 GKMRR 460 (519)
Q Consensus 456 ~~~~~ 460 (519)
.+++-
T Consensus 427 ~~~~~ 431 (458)
T PRK11906 427 IKLYY 431 (458)
T ss_pred HHHHh
Confidence 66653
No 230
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.85 E-value=1.2 Score=41.99 Aligned_cols=168 Identities=14% Similarity=0.074 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCC-c------hhHHHHHHHHHHH---cCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 048578 166 SLTRLITFYCNFGDVKSAQLLFDQMTEK-N------VVTWTAMINGHVK---QKNYREGIDLFRKMRDSGVEVNELTLVS 235 (519)
Q Consensus 166 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 235 (519)
+...++-.|-...+++...++++.+... + ...--....++-+ .|+.++|++++..+....-.+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3334555577888888888888888762 1 1111233445556 7888888888888665556777788877
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHH--HHHHHHHcCC-h
Q 048578 236 VLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNS--IIGGLAIHGC-G 312 (519)
Q Consensus 236 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--l~~~~~~~g~-~ 312 (519)
+.+.|-.. ..+.+.. + ...+++|++.|.+.-+-+...|+. ++..+...|. +
T Consensus 223 ~GRIyKD~------------~~~s~~~-d-------------~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~ 276 (374)
T PF13281_consen 223 LGRIYKDL------------FLESNFT-D-------------RESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDF 276 (374)
T ss_pred HHHHHHHH------------HHHcCcc-c-------------hHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcc
Confidence 77665321 1111100 1 112555666665553322222211 1111112221 1
Q ss_pred H---HHHHHH---HH-HHHCC---CCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHH
Q 048578 313 E---EAVKMF---WQ-MQMSG---IKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRR 359 (519)
Q Consensus 313 ~---~a~~~~---~~-m~~~g---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (519)
+ +..++- .. +.+.| -..+-..+..++.++.-.|+.++|.+..+.+.+
T Consensus 277 ~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 277 ETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred cchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 1 122222 11 11223 233444667777778888888888888888876
No 231
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.72 Score=41.16 Aligned_cols=121 Identities=10% Similarity=0.069 Sum_probs=70.5
Q ss_pred HHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH---HHHHHccccCCC
Q 048578 340 ACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGS---LLTACASADDGA 416 (519)
Q Consensus 340 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~---ll~~~~~~~~~~ 416 (519)
.....|++.+|...|+..... .+-+...-..++++|...|+.+.|..++..++..-...-+.. -|..+.+....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 455667777777777776662 233344555677777777777777777777733322222222 122233311133
Q ss_pred CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 417 NVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 417 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
+..... +-...+|+|...-..++..|...|+.++|.+.+=.+.+++
T Consensus 221 ~~~~l~----~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 EIQDLQ----RRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CHHHHH----HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 333332 3334577777777778888888888888777666655443
No 232
>PRK15331 chaperone protein SicA; Provisional
Probab=95.77 E-value=0.8 Score=37.22 Aligned_cols=84 Identities=11% Similarity=0.020 Sum_probs=54.2
Q ss_pred HhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhc---CCCChhhHHHHHHHHHHcCChHHHH
Q 048578 240 CANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIV---LEKNVCTWNSIIGGLAIHGCGEEAV 316 (519)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~ 316 (519)
+...|++++|..+|..+.-.+ +-+...+..|..++-..+++++|+..|... ...|+..+-....++...|+.+.|.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 446677777777777766654 334555566666666777777777776544 2345555666667777777777777
Q ss_pred HHHHHHHH
Q 048578 317 KMFWQMQM 324 (519)
Q Consensus 317 ~~~~~m~~ 324 (519)
..|+..++
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 77766665
No 233
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=1.4 Score=39.47 Aligned_cols=173 Identities=13% Similarity=0.041 Sum_probs=109.2
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcC
Q 048578 283 EALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYK 362 (519)
Q Consensus 283 ~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 362 (519)
...+++++...+....-..-.......|++.+|...|+...... .-+...-..++.+|...|+.+.|..++..+..+ -
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~ 198 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-A 198 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-c
Confidence 44445555544422222223345567888888888888877643 223456677888889999999999998887652 1
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhC--CCCCchH
Q 048578 363 VEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLE--PFNDGNY 439 (519)
Q Consensus 363 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~ 439 (519)
-.........-+..+.+.....+...+-.+..-.| |...-..+...+.. .|+.+.|.+.+=.+++.+ -.|...-
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~---~g~~e~Ale~Ll~~l~~d~~~~d~~~R 275 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHL---VGRNEAALEHLLALLRRDRGFEDGEAR 275 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhcccccCcHHH
Confidence 11111222234555666666655555555554466 44455556666777 888999888887777765 4477888
Q ss_pred HHHHHHHHhcCCchHHHHHHH
Q 048578 440 VLMSNIYAAKAQWDDAGKMRR 460 (519)
Q Consensus 440 ~~l~~~~~~~g~~~~A~~~~~ 460 (519)
..++..+.-.|.-+.+...++
T Consensus 276 k~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 276 KTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred HHHHHHHHhcCCCCHHHHHHH
Confidence 888888888886555444443
No 234
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.73 E-value=0.079 Score=50.29 Aligned_cols=62 Identities=11% Similarity=0.010 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH----HHHHHHHHHccccCCCCHHHHHHHHHHHHhh
Q 048578 367 VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAV----LWGSLLTACASADDGANVELAEIAMERLIKL 431 (519)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~----~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 431 (519)
...++.+..+|...|++++|+..|++. .+.|+.. +|..+..+|.. .|+.++|...++++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~---LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY---REEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHh
Confidence 445555555555555555555555554 4455432 35555555555 55556666555555554
No 235
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.73 E-value=0.33 Score=38.40 Aligned_cols=56 Identities=21% Similarity=0.218 Sum_probs=27.8
Q ss_pred HHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC
Q 048578 377 LCRARLLDEAYEVIRNM----PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN 435 (519)
Q Consensus 377 ~~~~~~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (519)
..+.|++++|.+.|+.+ +..| ....-..++.++.. .++++.|...+++.++++|.+
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~---~~~y~~A~a~~~rFirLhP~h 80 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK---QGDYEEAIAAYDRFIRLHPTH 80 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCCCC
Confidence 33455555555555554 1111 22333444555555 555666666666666655553
No 236
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.11 Score=48.29 Aligned_cols=66 Identities=12% Similarity=-0.012 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 399 AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 399 ~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
..++..+.-++.+ .+.+..|++...+++..+|+|..+...-+.+|...|+++.|+..|+++++...
T Consensus 257 ~~~~lNlA~c~lK---l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 257 LACHLNLAACYLK---LKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred HHHhhHHHHHHHh---hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 3456667777888 99999999999999999999999999999999999999999999999988544
No 237
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=0.33 Score=43.80 Aligned_cols=48 Identities=15% Similarity=-0.033 Sum_probs=20.2
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcH
Q 048578 310 GCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMR 358 (519)
Q Consensus 310 g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 358 (519)
|++.+|...++++.+. .+-|...+...=.+|...|+.+.-...++++.
T Consensus 117 g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIi 164 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKII 164 (491)
T ss_pred ccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhc
Confidence 4444444444444432 22233334444444444444444444444443
No 238
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.53 E-value=0.098 Score=40.07 Aligned_cols=89 Identities=18% Similarity=0.101 Sum_probs=46.2
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhC-CCC---CchHHHHHHHHHhc
Q 048578 376 LLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLE-PFN---DGNYVLMSNIYAAK 449 (519)
Q Consensus 376 ~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~ 449 (519)
++...|+.+.|++.|.+. .+-| ....||.-.+++.- .|+.++|..-+++++++. |.. ..+|..-+..|...
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL---q~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRL---QGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHH---cCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 344555555555555554 2222 34455555555555 555556655555555543 221 12344455555556
Q ss_pred CCchHHHHHHHHHHhCCC
Q 048578 450 AQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 450 g~~~~A~~~~~~m~~~~~ 467 (519)
|+-+.|..=|+..-+.|.
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 666666665555555544
No 239
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.48 E-value=1.6 Score=38.15 Aligned_cols=197 Identities=19% Similarity=0.089 Sum_probs=122.7
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHc-CCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC--Ch-hhHHHHHH-H
Q 048578 231 LTLVSVLSACANLGASELGKWVHEFVNKN-CIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK--NV-CTWNSIIG-G 305 (519)
Q Consensus 231 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~-~~~~~l~~-~ 305 (519)
..+......+...+.+..+...+...... ........+......+...+.+..+...+...... +. ........ .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 44444445555555555555555554432 22344445555555566666666666666665442 11 22222233 6
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCC-ChhHHHHHHHHHHhc
Q 048578 306 LAIHGCGEEAVKMFWQMQMSGIKP----DDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEP-NVKHYGCLVDLLCRA 380 (519)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~~~g~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 380 (519)
+...|+++.|...+.+... ..| ....+......+...++.+.+...+..... ..+. ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHc
Confidence 7788888888888888755 233 233444445556777888888888888877 2333 466777788888888
Q ss_pred CChHHHHHHHHhC-CCCCC-HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 381 RLLDEAYEVIRNM-PMEPN-AVLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 381 ~~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
++++.|...+... ...|+ ...+..+...+.. .+..+.+...+.+..+..|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLE---LGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHH---cCCHHHHHHHHHHHHHhCcc
Confidence 8888888888877 44554 3334444444435 67888888888888888876
No 240
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.44 E-value=0.65 Score=45.22 Aligned_cols=158 Identities=13% Similarity=0.070 Sum_probs=88.1
Q ss_pred HHHHcCChhHHHHHHH--HHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCH
Q 048578 204 GHVKQKNYREGIDLFR--KMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYI 281 (519)
Q Consensus 204 ~~~~~~~~~~a~~~~~--~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 281 (519)
...-.++++++.+..+ ++.. .+ +....+.++..+.+.|..+.|..+...-. .-.....+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence 3445566666655554 1111 11 23345566666666777776665532221 123445677788
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhc
Q 048578 282 EEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDY 361 (519)
Q Consensus 282 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 361 (519)
+.|.++.++.. +...|..|.......|+++-|++.|++... |..|+-.|.-.|+.+...++.+.....
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~- 402 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER- 402 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-
Confidence 88777765544 566788888888888888888888877542 445555666677777666666655542
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 048578 362 KVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMP 394 (519)
Q Consensus 362 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 394 (519)
| -++....++.-.|+.++..+++.+.+
T Consensus 403 ~------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 403 G------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred c------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 2 24445556666777777777777664
No 241
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.44 E-value=1.6 Score=37.88 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=12.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHH
Q 048578 198 WTAMINGHVKQKNYREGIDLFRKM 221 (519)
Q Consensus 198 ~~~li~~~~~~~~~~~a~~~~~~m 221 (519)
|..-..+|...+++++|-..+.+.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA 57 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKA 57 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHH
Confidence 444444555555555555544444
No 242
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.44 E-value=0.9 Score=35.13 Aligned_cols=137 Identities=12% Similarity=0.137 Sum_probs=75.8
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchh---HHHHHHHHHHhcCCH
Q 048578 205 HVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDK---LGAALTDMYAKCGYI 281 (519)
Q Consensus 205 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~ 281 (519)
..-.|..++..++..+.... .+..-++.++.-....-+-+-..+.++.+-+ ..|.. -...++.+|+..|.
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~- 84 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNK- 84 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT--
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcc-
Confidence 44567777778887777653 2444555555443333333333333333322 22221 12334455554443
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhc
Q 048578 282 EEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDY 361 (519)
Q Consensus 282 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 361 (519)
+.......+..+...|+-++-.+++.++.+.+ .++......+..+|.+.|+..++.+++.+..+.
T Consensus 85 -------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek- 149 (161)
T PF09205_consen 85 -------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK- 149 (161)
T ss_dssp ---------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-
T ss_pred -------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-
Confidence 23344556777888888888888888887543 778888888888999999999999988888873
Q ss_pred CC
Q 048578 362 KV 363 (519)
Q Consensus 362 ~~ 363 (519)
|+
T Consensus 150 G~ 151 (161)
T PF09205_consen 150 GL 151 (161)
T ss_dssp T-
T ss_pred ch
Confidence 55
No 243
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.42 E-value=2.3 Score=39.61 Aligned_cols=274 Identities=12% Similarity=0.075 Sum_probs=127.6
Q ss_pred CChHHHHHHHhcC---CCCCcchHHHHHHHH--HhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHH
Q 048578 79 SQIAYAHLVFNQI---INPSTFAFNTVIRGY--AEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSL 153 (519)
Q Consensus 79 ~~~~~A~~~~~~~---~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~ 153 (519)
|+-..|.++-.+. ...|....-.++.+- .-.|+++.|.+-|+.|... +.|-..=+++
T Consensus 98 Gda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-----PEtRllGLRg------------- 159 (531)
T COG3898 98 GDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-----PETRLLGLRG------------- 159 (531)
T ss_pred CchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-----hHHHHHhHHH-------------
Confidence 5666666655443 234555444444433 2357777777777777652 1111111111
Q ss_pred HHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-chhHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCC
Q 048578 154 VVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE--K-NVVTWTAMINGHVKQKNYREGIDLFRKMRDSG-VEVN 229 (519)
Q Consensus 154 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~ 229 (519)
|.----+.|+.+.|.++-+.... | -...+...+...+..|+|+.|+++++.-+... +.++
T Consensus 160 ----------------LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~ 223 (531)
T COG3898 160 ----------------LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKD 223 (531)
T ss_pred ----------------HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchh
Confidence 11112244566666655554433 2 23456677777777777777777776655442 2233
Q ss_pred HH--HHHHHHHHHh---ccCChHHHHHHHHHHHHcCCCcchhH-HHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHH
Q 048578 230 EL--TLVSVLSACA---NLGASELGKWVHEFVNKNCIILNDKL-GAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSII 303 (519)
Q Consensus 230 ~~--~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~ 303 (519)
.. .-..|+.+-. -..+...|...-.+..+. .|+..- -..-..++++.|+..++-.+++.+-+..++.--..+
T Consensus 224 ~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~l 301 (531)
T COG3898 224 VAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALL 301 (531)
T ss_pred hHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHH
Confidence 21 1122222211 112344444444444332 222211 112244566666666666666666443332222222
Q ss_pred HHHHHcCChHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhc-
Q 048578 304 GGLAIHGCGEEAVKMFWQMQM-SGIKPDD-VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRA- 380 (519)
Q Consensus 304 ~~~~~~g~~~~a~~~~~~m~~-~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 380 (519)
..+.+.|+ .+..-+++... ..++||. .....+..+....|++..|..--+.... ..|....|..|.+.-...
T Consensus 302 Y~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres~~lLlAdIeeAet 376 (531)
T COG3898 302 YVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR---EAPRESAYLLLADIEEAET 376 (531)
T ss_pred HHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh---hCchhhHHHHHHHHHhhcc
Confidence 22333333 23333333221 1123332 3555555556666666655554444432 345555555555544333
Q ss_pred CChHHHHHHHHhC
Q 048578 381 RLLDEAYEVIRNM 393 (519)
Q Consensus 381 ~~~~~A~~~~~~~ 393 (519)
|+-.++..++.+.
T Consensus 377 GDqg~vR~wlAqa 389 (531)
T COG3898 377 GDQGKVRQWLAQA 389 (531)
T ss_pred CchHHHHHHHHHH
Confidence 5666666555544
No 244
>PRK11906 transcriptional regulator; Provisional
Probab=95.29 E-value=0.93 Score=43.39 Aligned_cols=140 Identities=10% Similarity=0.046 Sum_probs=92.1
Q ss_pred CHHHHHHHHhhcC---CCC---hhhHHHHHHHHHH---------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 048578 280 YIEEALRVFKIVL---EKN---VCTWNSIIGGLAI---------HGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHA 344 (519)
Q Consensus 280 ~~~~a~~~~~~~~---~~~---~~~~~~l~~~~~~---------~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 344 (519)
..+.|..+|.+.. +-| ...|..+..++.. .....+|.+..++..+.+ +-|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 3567888888887 434 3444444433322 123456677777777765 55677777777777778
Q ss_pred CcHHHHHHHHHHcHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH---HHHHHHHHHccccCCCCHH
Q 048578 345 GLIEKGKEIFYNMRRDYKVEPN-VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAV---LWGSLLTACASADDGANVE 419 (519)
Q Consensus 345 g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~---~~~~ll~~~~~~~~~~~~~ 419 (519)
++++.|...|+.... +.|| ..+|....-.+.-.|+.++|.+.+++. .+.|... .....+..|.. ...+
T Consensus 352 ~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~----~~~~ 424 (458)
T PRK11906 352 GQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP----NPLK 424 (458)
T ss_pred cchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC----Cchh
Confidence 889999999998876 3454 456666666677789999999998884 6666443 44444445654 3577
Q ss_pred HHHHHHHH
Q 048578 420 LAEIAMER 427 (519)
Q Consensus 420 ~a~~~~~~ 427 (519)
.|++++-+
T Consensus 425 ~~~~~~~~ 432 (458)
T PRK11906 425 NNIKLYYK 432 (458)
T ss_pred hhHHHHhh
Confidence 77777655
No 245
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.27 E-value=0.22 Score=43.76 Aligned_cols=109 Identities=10% Similarity=0.154 Sum_probs=81.8
Q ss_pred HHHHHhcCC--CCchhHHHHHHHHHHH-----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-----------
Q 048578 183 AQLLFDQMT--EKNVVTWTAMINGHVK-----QKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLG----------- 244 (519)
Q Consensus 183 A~~~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----------- 244 (519)
.+..|.... +.|-.+|.+.+..+.. .+.++-....++.|.+.|+.-|..+|+.|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345566655 4677788877776653 4667777788889999999999999999998876543
Q ss_pred -----ChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCH-HHHHHHHhhc
Q 048578 245 -----ASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYI-EEALRVFKIV 291 (519)
Q Consensus 245 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~ 291 (519)
+-+.+.+++++|...|+.||-.+-..|++++.+.+.. .+..++.--|
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 4456788999999999999999999999999887753 3344444333
No 246
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.27 E-value=1.8 Score=37.69 Aligned_cols=219 Identities=18% Similarity=0.067 Sum_probs=156.4
Q ss_pred CChHHHHHHHHHHHHcCCC-cchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhhHHHHHHHHHHcCChHHHHH
Q 048578 244 GASELGKWVHEFVNKNCII-LNDKLGAALTDMYAKCGYIEEALRVFKIVLE-----KNVCTWNSIIGGLAIHGCGEEAVK 317 (519)
Q Consensus 244 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~ 317 (519)
+....+...+......... ............+...+.+..+...+..... .....+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3344444444444443322 1356677778888889999999888877643 344567777778888888999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHhccCcHHHHHHHHHHcHHhcCC--CCChhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 048578 318 MFWQMQMSGIKPDDVTLIAVLT-ACSHAGLIEKGKEIFYNMRRDYKV--EPNVKHYGCLVDLLCRARLLDEAYEVIRNM- 393 (519)
Q Consensus 318 ~~~~m~~~g~~p~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 393 (519)
.+.........+. ........ ++...|+++.|...+.+... ... ......+......+...++.+.+...+...
T Consensus 117 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9999887543331 22222333 78899999999999999855 221 123344445555577889999999999888
Q ss_pred CCCCC--HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 394 PMEPN--AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 394 ~~~p~--~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
...++ ...+..+...+.. .++++.+...+.......|.....+..+...+...|.++++...+++......
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLK---LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred hhCcccchHHHHHhhHHHHH---cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 44444 5677777777888 88999999999999999987666777777777777889999998888776544
No 247
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.24 E-value=0.17 Score=44.52 Aligned_cols=86 Identities=20% Similarity=0.077 Sum_probs=42.8
Q ss_pred HcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC-hhHHHHHHHHHHhcCChH
Q 048578 308 IHGCGEEAVKMFWQMQMSGI--KPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN-VKHYGCLVDLLCRARLLD 384 (519)
Q Consensus 308 ~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 384 (519)
+.|++..|...|...++..- .-....+..|..++...|+++.|..+|..+.+.++-.|- +..+-.|.....+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 44556666666666554320 011124445556666666666666666655554333222 244444445555555555
Q ss_pred HHHHHHHhC
Q 048578 385 EAYEVIRNM 393 (519)
Q Consensus 385 ~A~~~~~~~ 393 (519)
+|..+|++.
T Consensus 233 ~A~atl~qv 241 (262)
T COG1729 233 EACATLQQV 241 (262)
T ss_pred HHHHHHHHH
Confidence 555555444
No 248
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.21 E-value=0.22 Score=43.82 Aligned_cols=98 Identities=12% Similarity=0.079 Sum_probs=75.8
Q ss_pred HHHHhhcC--CCChhhHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC------------
Q 048578 285 LRVFKIVL--EKNVCTWNSIIGGLAI-----HGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAG------------ 345 (519)
Q Consensus 285 ~~~~~~~~--~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g------------ 345 (519)
+..|..+. ++|-.+|.+.+..|.. .+.++-....++.|.+-|+.-|..+|..|++.+=+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44455554 5677788888777754 3667777888889999999999999999998765532
Q ss_pred ----cHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCCh
Q 048578 346 ----LIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLL 383 (519)
Q Consensus 346 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 383 (519)
+-+=++++++.|.. +|+.||..+-..|+.++.+.+-.
T Consensus 134 HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhcccccc
Confidence 33457889999988 79999999999999999887753
No 249
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.10 E-value=3.8 Score=40.44 Aligned_cols=180 Identities=14% Similarity=0.063 Sum_probs=123.7
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHH
Q 048578 263 LNDKLGAALTDMYAKCGYIEEALRVFKIVLEK---NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGI--KPDDVTLIAV 337 (519)
Q Consensus 263 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~l 337 (519)
++..+|...+..-.+.|+.+.+.-+|++..-| =...|-..+.-....|+.+-|..++....+--+ .|....+.+.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 35667888888888999999999999988665 234555555555566999988888877654332 2333333333
Q ss_pred HHHHhccCcHHHHHHHHHHcHHhcCCCCCh-hHHHHHHHHHHhcCChHHHH---HHHHhC-CCCCCHHH----HHHHHHH
Q 048578 338 LTACSHAGLIEKGKEIFYNMRRDYKVEPNV-KHYGCLVDLLCRARLLDEAY---EVIRNM-PMEPNAVL----WGSLLTA 408 (519)
Q Consensus 338 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~---~~~~~~-~~~p~~~~----~~~ll~~ 408 (519)
.+-..|+++.|..+++.+.++ . |+. ..-..-+....+.|..+.+. +++... ...-+... +.-....
T Consensus 375 --f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 375 --FEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARL 449 (577)
T ss_pred --HHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHH
Confidence 345668999999999999984 3 543 33334556677888888887 555544 11212222 2222222
Q ss_pred -HccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 048578 409 -CASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKA 450 (519)
Q Consensus 409 -~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 450 (519)
+.. .++.+.|..++.++.+..|++...|..++......+
T Consensus 450 ~~~i---~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 450 RYKI---REDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHH---hcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 333 668999999999999999999999999999888776
No 250
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.10 E-value=0.55 Score=42.88 Aligned_cols=207 Identities=12% Similarity=0.030 Sum_probs=122.8
Q ss_pred HHHcCChHHHHHHHHHHHHCC--CCCCHH-----HHHHHHHHHhccC-cHHHHHHHHHHcHHhc-------CCCCC----
Q 048578 306 LAIHGCGEEAVKMFWQMQMSG--IKPDDV-----TLIAVLTACSHAG-LIEKGKEIFYNMRRDY-------KVEPN---- 366 (519)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~~~g--~~p~~~-----~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~-------~~~~~---- 366 (519)
..+.|+++.|...+.+..... ..|+.. .+..+.......+ +++.|...+++..+-. ...|+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 357899999999999986532 344442 2333344445566 9999999988876521 12233
Q ss_pred -hhHHHHHHHHHHhcCChH---HHHHHHHhC-CCCCC-HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHH
Q 048578 367 -VKHYGCLVDLLCRARLLD---EAYEVIRNM-PMEPN-AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYV 440 (519)
Q Consensus 367 -~~~~~~l~~~~~~~~~~~---~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (519)
..+...++.+|...+..+ +|..+++.+ +--|+ ...+..-+..+.+ .++.+.+.+.+.+|+..-+-....+.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~---~~~~~~~~~~L~~mi~~~~~~e~~~~ 159 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLK---SFDEEEYEEILMRMIRSVDHSESNFD 159 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhc---cCChhHHHHHHHHHHHhcccccchHH
Confidence 245667788888877655 455555555 22344 3455556677777 78999999999999987654455666
Q ss_pred HHHHHHH--hcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCCChhHHHHHHHHHHHHHHhcccCC
Q 048578 441 LMSNIYA--AKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLREECYAA 516 (519)
Q Consensus 441 ~l~~~~~--~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 516 (519)
..+..+. .......|...+.++....+.|.+.. |++..-..+.++..........+..+.++++.....+....|
T Consensus 160 ~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ 236 (278)
T PF08631_consen 160 SILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQ 236 (278)
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCC
Confidence 5555552 22344678888888887777765542 322221111222222223334444555555555445444444
No 251
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.06 E-value=1.4 Score=35.26 Aligned_cols=129 Identities=12% Similarity=0.017 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHH
Q 048578 298 TWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLL 377 (519)
Q Consensus 298 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (519)
....++..+...+.......+++.+...+ ..+...++.++..|++.+ .++....+.. . .+.......++.|
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~-----~~~yd~~~~~~~c 79 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--K-----SNHYDIEKVGKLC 79 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c-----cccCCHHHHHHHH
Confidence 34456667777778888888888887766 356667778888887653 3344444442 1 2223334467777
Q ss_pred HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 048578 378 CRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAA 448 (519)
Q Consensus 378 ~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 448 (519)
.+.+-++++.-++.++|.. ...+..+.. ..++++.|.+++.+ +.++..|..++..+..
T Consensus 80 ~~~~l~~~~~~l~~k~~~~------~~Al~~~l~--~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 80 EKAKLYEEAVELYKKDGNF------KDAIVTLIE--HLGNYEKAIEYFVK-----QNNPELWAEVLKALLD 137 (140)
T ss_pred HHcCcHHHHHHHHHhhcCH------HHHHHHHHH--cccCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence 7888888888888887532 222333333 03678888887765 2356677777766653
No 252
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.05 E-value=4 Score=40.42 Aligned_cols=157 Identities=12% Similarity=0.121 Sum_probs=84.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCC-CCCC-----cchHHHHHHHHcCc--cc--hHHHHHHHHHhCCCCCchhHHHH
Q 048578 100 NTVIRGYAEAGLGHRGIQLYTQMIGNG-LDPD-----SFTYPILLKACGDL--RQ--VKGVHSLVVKSKDFNSVIHSLTR 169 (519)
Q Consensus 100 ~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p~-----~~~~~~ll~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~ 169 (519)
..+++...-.||-+.+++++.+..+.+ +.-. ...|+.++..+... .+ ...+.+.+......-|+...|..
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~ 271 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF 271 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 345555556678888888777765532 1111 12344444444433 12 33444444333323455444433
Q ss_pred -HHHHHHhcCChHHHHHHHhcCCC-----C--chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-
Q 048578 170 -LITFYCNFGDVKSAQLLFDQMTE-----K--NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSAC- 240 (519)
Q Consensus 170 -l~~~~~~~g~~~~A~~~~~~~~~-----~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~- 240 (519)
-.+.+...|++++|.+.|+.... + ....+-.+.-++.-..+|++|...|..+.+.. .-+..+|..+..+|
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHH
Confidence 34556677778888877776443 1 12233445556677777788877777777653 33444555544443
Q ss_pred hccCCh-------HHHHHHHHHHH
Q 048578 241 ANLGAS-------ELGKWVHEFVN 257 (519)
Q Consensus 241 ~~~~~~-------~~a~~~~~~~~ 257 (519)
...++. ++|..++.++.
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHH
Confidence 345555 56666665553
No 253
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.04 E-value=0.34 Score=38.30 Aligned_cols=116 Identities=16% Similarity=0.096 Sum_probs=57.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhc
Q 048578 303 IGGLAIHGCGEEAVKMFWQMQMSGI--KPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRA 380 (519)
Q Consensus 303 ~~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 380 (519)
.....+.|++++|.+.|+.+...-- .-....-..++.++.+.|+++.|...+++..+-+.-.|+ .-|...+.+++.-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHH
Confidence 3344455666666666666654310 112234555566666666666666666666553333333 2233334443332
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCc
Q 048578 381 RLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDG 437 (519)
Q Consensus 381 ~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (519)
...+..+.-+- ....+.+....|...|+.+++.-|++..
T Consensus 96 ~~~~~~~~~~~------------------~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 96 EQDEGSLQSFF------------------RSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHhhhHHhhhc------------------ccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 22221111110 1112244567788888888888887543
No 254
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.89 E-value=0.33 Score=44.29 Aligned_cols=162 Identities=10% Similarity=0.021 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCC----ChhH
Q 048578 298 TWNSIIGGLAIHGCGEEAVKMFWQMQMS-GIKPD---DVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEP----NVKH 369 (519)
Q Consensus 298 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~-g~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~ 369 (519)
+|..+..++.+..++.+++.+-+.-... |..|. .....++..+....+.++++.+.|+...+-..-.. ....
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 4444555555555555555554443221 22221 12333455556666666777776666654211111 2345
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-------CCCCCHH-----HHHHHHHHHccccCCCCHHHHHHHHHHHHhh----C-
Q 048578 370 YGCLVDLLCRARLLDEAYEVIRNM-------PMEPNAV-----LWGSLLTACASADDGANVELAEIAMERLIKL----E- 432 (519)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~-------~~~p~~~-----~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~----~- 432 (519)
+-.|...|.+..++++|.-+..+. +++--.. ....+.-++.. .|..-.|.+.-+++.++ +
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~---~G~LgdA~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRL---LGRLGDAMECCEEAMKLALQHGD 241 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHH---hcccccHHHHHHHHHHHHHHhCC
Confidence 566666777777776665544333 2221111 22223334555 33344444444443332 2
Q ss_pred -CCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 048578 433 -PFNDGNYVLMSNIYAAKAQWDDAGKMRRLM 462 (519)
Q Consensus 433 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (519)
+........++++|...|+.|.|+.-|+..
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 223445556777777777777666655543
No 255
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.80 E-value=3.8 Score=38.93 Aligned_cols=130 Identities=14% Similarity=0.122 Sum_probs=87.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcC-CCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHH-HHHHHHH
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYK-VEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAVLW-GSLLTAC 409 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~-~~ll~~~ 409 (519)
.|...+.+-.+..-++.|..+|-++.+. + +.+++..+++++..++ .|+..-|..+|+-- ..-||...| .-.+..+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4556666666777778888888888774 5 5677777777777654 56677777777765 333444433 3444455
Q ss_pred ccccCCCCHHHHHHHHHHHHhhCCC--CCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 410 ASADDGANVELAEIAMERLIKLEPF--NDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
.. .++-+.|..+|+..+..-.. -...|..++..-..-|++..+..+=++|.+.-.
T Consensus 477 i~---inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 477 IR---INDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HH---hCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 56 67778888888866543222 256788888888888888888887777776543
No 256
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.77 E-value=0.26 Score=43.43 Aligned_cols=101 Identities=18% Similarity=0.158 Sum_probs=53.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCC-CChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-HHHHHHHH
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVE-PNVKHYGCLVDLLCRARLLDEAYEVIRNM----PMEPN-AVLWGSLL 406 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~p~-~~~~~~ll 406 (519)
.|+.-+. +.+.|++..|...|....+.+.-. -....+..|..++...|++++|..+|..+ +-.|- ...+--|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4444443 344566777777777766632110 11223344666666666666666666655 22221 12333333
Q ss_pred HHHccccCCCCHHHHHHHHHHHHhhCCCCCc
Q 048578 407 TACASADDGANVELAEIAMERLIKLEPFNDG 437 (519)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (519)
....+ .|+.++|...|+++.+..|..+.
T Consensus 223 ~~~~~---l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGR---LGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHH---hcCHHHHHHHHHHHHHHCCCCHH
Confidence 34444 66666666666666666666443
No 257
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.66 E-value=0.86 Score=41.76 Aligned_cols=220 Identities=12% Similarity=0.078 Sum_probs=120.1
Q ss_pred HHhcCChHHHHHHHhcCCCC------chhHHHHHHHHHHHcCChhHHHHHHHHHHhC--CCCCCH---HHHHHHHHHHhc
Q 048578 174 YCNFGDVKSAQLLFDQMTEK------NVVTWTAMINGHVKQKNYREGIDLFRKMRDS--GVEVNE---LTLVSVLSACAN 242 (519)
Q Consensus 174 ~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~---~~~~~ll~~~~~ 242 (519)
+....+.++|+..+.+.... .-.++..+..+.+..|.+++++..--.-.+. ...... ..|..+.+++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888777665441 1235666777778888877776543222211 111111 233344444444
Q ss_pred cCChHHHHHHHHHHHHc-CCC---cchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------C--ChhhHHHHHHHHHHc
Q 048578 243 LGASELGKWVHEFVNKN-CII---LNDKLGAALTDMYAKCGYIEEALRVFKIVLE-------K--NVCTWNSIIGGLAIH 309 (519)
Q Consensus 243 ~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~--~~~~~~~l~~~~~~~ 309 (519)
..++.+++.+-..-... |.. .......++..++...+.++++++.|+...+ + ....+-.+...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 44555555444433321 111 1223445566777777777888777776632 1 234677777778888
Q ss_pred CChHHHHHHHHHHHH----CCCCCCHHHH-----HHHHHHHhccCcHHHHHHHHHHcHHh---cCCCCC-hhHHHHHHHH
Q 048578 310 GCGEEAVKMFWQMQM----SGIKPDDVTL-----IAVLTACSHAGLIEKGKEIFYNMRRD---YKVEPN-VKHYGCLVDL 376 (519)
Q Consensus 310 g~~~~a~~~~~~m~~----~g~~p~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~-~~~~~~l~~~ 376 (519)
.|+++|.-+..+..+ -++.-=..-| ..+.-++...|.+-.|.+..++..+- .|..+. ......+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 888888776665532 1211111122 23334566677777777777666541 122221 2334456677
Q ss_pred HHhcCChHHHHHHHHhC
Q 048578 377 LCRARLLDEAYEVIRNM 393 (519)
Q Consensus 377 ~~~~~~~~~A~~~~~~~ 393 (519)
|...|+.+.|..-|+..
T Consensus 256 yR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHhcccHhHHHHHHHHH
Confidence 77778888877777664
No 258
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.57 E-value=1.3 Score=38.04 Aligned_cols=95 Identities=13% Similarity=-0.006 Sum_probs=52.9
Q ss_pred HHHHHHhc-CChHHHHHHHHhC-----CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCch-------H
Q 048578 373 LVDLLCRA-RLLDEAYEVIRNM-----PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGN-------Y 439 (519)
Q Consensus 373 l~~~~~~~-~~~~~A~~~~~~~-----~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-------~ 439 (519)
+...|..- .+++.|+..|+.. +-+.+...-..++.+..-+...+++.+|+.+|+++....-+|+-. +
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 44444433 5666777776665 333344444555554322223889999999999988765443322 1
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 440 VLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 440 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
..-+.++.-.++.-.+...+++-.+..+
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQELDP 226 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHhcCC
Confidence 1222223333566666677776665443
No 259
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.36 E-value=1.1 Score=43.58 Aligned_cols=155 Identities=12% Similarity=0.064 Sum_probs=95.6
Q ss_pred HHhcCChHHHHHHHh--cCC-CCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHH
Q 048578 174 YCNFGDVKSAQLLFD--QMT-EKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGK 250 (519)
Q Consensus 174 ~~~~g~~~~A~~~~~--~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 250 (519)
..-.++++++.++.+ ++. .-.....+.++..+-+.|.++.|+++..+-. .-.....+.|+++.|.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIAL 338 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHH
Confidence 344677887655554 211 1123457778888888888888887754321 1233445678888777
Q ss_pred HHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 048578 251 WVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPD 330 (519)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 330 (519)
++.+. ..+...|..|.+...+.|+++-|++.|.+.. -|..|+-.|.-.|+.+...++.+.....|
T Consensus 339 ~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----d~~~L~lLy~~~g~~~~L~kl~~~a~~~~---- 403 (443)
T PF04053_consen 339 EIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAK-----DFSGLLLLYSSTGDREKLSKLAKIAEERG---- 403 (443)
T ss_dssp HHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT----
T ss_pred HHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc-----CccccHHHHHHhCCHHHHHHHHHHHHHcc----
Confidence 65433 2356688888888888999999988888764 36666777778888888877777777665
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHc
Q 048578 331 DVTLIAVLTACSHAGLIEKGKEIFYNM 357 (519)
Q Consensus 331 ~~~~~~l~~~~~~~g~~~~a~~~~~~~ 357 (519)
-++....++.-.|+.++..+++.+.
T Consensus 404 --~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 --DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ---HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred --CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2445555566668887777776655
No 260
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.21 E-value=3.1 Score=35.40 Aligned_cols=32 Identities=19% Similarity=0.382 Sum_probs=25.1
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 436 DGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
..+|..|+.-|...|+.++|..+|+.....++
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 45777888888888999999888887766544
No 261
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.19 E-value=5.8 Score=38.45 Aligned_cols=57 Identities=12% Similarity=-0.011 Sum_probs=30.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHcH
Q 048578 302 IIGGLAIHGCGEEAVKMFWQMQMSGIK-PDDVTLIAVLTACSHAGLIEKGKEIFYNMR 358 (519)
Q Consensus 302 l~~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 358 (519)
+..++.+.|+.++|++.+++|.+..-. -+......|+.++...+.+.++..++.+..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 444455556666666666666543211 112245555666666666666666655553
No 262
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.11 E-value=0.51 Score=42.69 Aligned_cols=116 Identities=7% Similarity=0.001 Sum_probs=89.3
Q ss_pred hccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHH----HHHHccccCC
Q 048578 342 SHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-P-MEPNAVLWGSL----LTACASADDG 415 (519)
Q Consensus 342 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~-~~p~~~~~~~l----l~~~~~~~~~ 415 (519)
...|+..+|-..++++.+ ..|.|...+..-=+++...|+.+.-...++++ + -.|+...|..+ ..++.. .
T Consensus 114 ~~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E---~ 188 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE---C 188 (491)
T ss_pred hccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH---h
Confidence 456788888888999998 56778888888888999999999998888888 3 35665433322 222344 8
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 048578 416 ANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLM 462 (519)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (519)
|-+++|++..+++.+++|.|.-+.-.++-++...|+..++.+.+.+-
T Consensus 189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 88999999999999999988777777777788888888888876654
No 263
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.10 E-value=0.67 Score=35.70 Aligned_cols=89 Identities=15% Similarity=0.066 Sum_probs=55.6
Q ss_pred HHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHH---HHccc
Q 048578 340 ACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM----PMEPNAVLWGSLLT---ACASA 412 (519)
Q Consensus 340 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~p~~~~~~~ll~---~~~~~ 412 (519)
+....|+++.|++.|..... -.+.....||.-..++.-.|+.++|++-+++. |-+ ......+.++ .|..
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl- 127 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRL- 127 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHH-
Confidence 45566777777777777665 34455667777777777777777777766665 212 2222222222 2555
Q ss_pred cCCCCHHHHHHHHHHHHhhCCC
Q 048578 413 DDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
.|+.+.|..-|+.+.+++..
T Consensus 128 --~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 128 --LGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred --hCchHHHHHhHHHHHHhCCH
Confidence 77788888888877777643
No 264
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.05 E-value=4.7 Score=36.84 Aligned_cols=117 Identities=12% Similarity=0.121 Sum_probs=57.4
Q ss_pred HhcCChHHHHHHHhcCCC------Cch------hHHHHHHHHHHHcC-ChhHHHHHHHHHHhC--------CCCCCH---
Q 048578 175 CNFGDVKSAQLLFDQMTE------KNV------VTWTAMINGHVKQK-NYREGIDLFRKMRDS--------GVEVNE--- 230 (519)
Q Consensus 175 ~~~g~~~~A~~~~~~~~~------~~~------~~~~~li~~~~~~~-~~~~a~~~~~~m~~~--------~~~~~~--- 230 (519)
.+.|+.+.|..++.+... |+. ..||. .......+ +++.|...+++..+- ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~-G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNI-GKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHH-HHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 456788888888777654 221 12333 33334445 777776666554332 112222
Q ss_pred --HHHHHHHHHHhccCChHHH---HHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 048578 231 --LTLVSVLSACANLGASELG---KWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE 293 (519)
Q Consensus 231 --~~~~~ll~~~~~~~~~~~a---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 293 (519)
.++..++.++...+..+.. ..+.+.+.+. .+..+.++..-+..+.+.++.+.+.+.+.+|+.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 2344455556555544433 3333333222 222234444445555555666666666666543
No 265
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.01 E-value=7.6 Score=40.09 Aligned_cols=177 Identities=12% Similarity=0.007 Sum_probs=103.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCchh---HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 048578 166 SLTRLITFYCNFGDVKSAQLLFDQMTEKNVV---TWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACAN 242 (519)
Q Consensus 166 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 242 (519)
....-++.+++...++-|..+-+.-..+... ........+.+.|++++|...|-+-... +.|. .++.-+..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLD 409 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcC
Confidence 3445566666677777777766554332111 2222334456778888888777665432 2332 23444555
Q ss_pred cCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhh--HHHHHHHHHHcCChHHHHHHHH
Q 048578 243 LGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCT--WNSIIGGLAIHGCGEEAVKMFW 320 (519)
Q Consensus 243 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~ 320 (519)
......-..+++.+.+.|. .+...-..|+.+|.+.++.+.-.++.+... .+... ....+..+.+.+-.++|..+-.
T Consensus 410 aq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 5566666677777777774 345555678888888888888777776665 22222 3445556666666666665554
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcH
Q 048578 321 QMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMR 358 (519)
Q Consensus 321 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 358 (519)
+... .......+ +-..|++++|.++++.+.
T Consensus 488 k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 488 KFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred Hhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 4332 22333333 345678888888877663
No 266
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.95 E-value=6 Score=37.76 Aligned_cols=324 Identities=12% Similarity=0.072 Sum_probs=179.8
Q ss_pred HHHHHHHhhcCCCChHHHHHHHhcCCC--------CCcchHHHHHHHHHhc--------CC-------hhHHHHHHHHHH
Q 048578 67 QLAKLIESLVNSSQIAYAHLVFNQIIN--------PSTFAFNTVIRGYAEA--------GL-------GHRGIQLYTQMI 123 (519)
Q Consensus 67 ~ll~~~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~ll~~~~~~--------g~-------~~~a~~~~~~m~ 123 (519)
..++.+... |++.+++.+++++.+ -+..+||.++-.+++. .. ++.++-...+|.
T Consensus 133 i~a~sLIe~---g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~ 209 (549)
T PF07079_consen 133 IEAHSLIET---GRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIH 209 (549)
T ss_pred HHHHHHHhc---CCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHH
Confidence 344555666 999999999998843 4778888855444332 11 234444444444
Q ss_pred hC------CCCCCcchHHHHHHHHcCccc-----hHHHHHHHHHhCCCCCchh-HHHHHHHHHHhcCChHHHHHHHhcCC
Q 048578 124 GN------GLDPDSFTYPILLKACGDLRQ-----VKGVHSLVVKSKDFNSVIH-SLTRLITFYCNFGDVKSAQLLFDQMT 191 (519)
Q Consensus 124 ~~------g~~p~~~~~~~ll~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 191 (519)
.. .+.|....+..++....-... ..++++.....- +.|+-. +...+..-+.. +.+++..+-+.+.
T Consensus 210 ~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~y-v~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia 286 (549)
T PF07079_consen 210 AFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFY-VHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIA 286 (549)
T ss_pred HHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhc-cCCchhHHHHHHHHHHhc--ChHHHHHHHHHHH
Confidence 32 234555555666655443333 444444444444 556533 33444444444 4455544444432
Q ss_pred C--------CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH-------HHHHHHh-ccC---ChHHHHHH
Q 048578 192 E--------KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLV-------SVLSACA-NLG---ASELGKWV 252 (519)
Q Consensus 192 ~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-------~ll~~~~-~~~---~~~~a~~~ 252 (519)
. .=+.+|..++....+.++...|.+.+.-+... .|+...-. .+-+..+ .-. +...-..+
T Consensus 287 ~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~l 364 (549)
T PF07079_consen 287 SSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNL 364 (549)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHH
Confidence 2 33457889999999999999999998877654 33332111 1112222 111 22223344
Q ss_pred HHHHHHcCCCcchhHHHHHH---HHHHhcCC-HHHHHHHHhhcCC---CChhhHHHHH----HHHHH---cCChHHHHHH
Q 048578 253 HEFVNKNCIILNDKLGAALT---DMYAKCGY-IEEALRVFKIVLE---KNVCTWNSII----GGLAI---HGCGEEAVKM 318 (519)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~l~---~~~~~~g~-~~~a~~~~~~~~~---~~~~~~~~l~----~~~~~---~g~~~~a~~~ 318 (519)
|+.+...++.. .....-|+ .-+-+.|. -++|+++++.+.+ .|...-|.+. ..|.+ ...+..-+.+
T Consensus 365 we~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkL 443 (549)
T PF07079_consen 365 WEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKL 443 (549)
T ss_pred HHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 55555444321 11222222 22334444 7788888877743 3443333322 12221 2334444455
Q ss_pred HHHHHHCCCCCCHH----HHHHHHHH--HhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 048578 319 FWQMQMSGIKPDDV----TLIAVLTA--CSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRN 392 (519)
Q Consensus 319 ~~~m~~~g~~p~~~----~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 392 (519)
-+-+.+.|++|-.. .-+.|..| +...|++.++.-.-..+.+ +.|++.+|..+.-++....++++|.+.+..
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 55556677776443 33333333 4567888888777666654 678888888888888888899999999888
Q ss_pred CCCCCCHHHHHH
Q 048578 393 MPMEPNAVLWGS 404 (519)
Q Consensus 393 ~~~~p~~~~~~~ 404 (519)
++ |+..++++
T Consensus 521 LP--~n~~~~ds 530 (549)
T PF07079_consen 521 LP--PNERMRDS 530 (549)
T ss_pred CC--CchhhHHH
Confidence 74 45555543
No 267
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.87 E-value=0.11 Score=30.05 Aligned_cols=26 Identities=12% Similarity=0.160 Sum_probs=21.9
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 438 NYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
+|..|+.+|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47789999999999999999999854
No 268
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.75 E-value=4.5 Score=35.59 Aligned_cols=59 Identities=15% Similarity=0.087 Sum_probs=44.1
Q ss_pred HHHHccccCCCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 048578 406 LTACASADDGANVELAEIAMERLIKLEPFND---GNYVLMSNIYAAKAQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 406 l~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (519)
.+.|.+ .|.+..|..-++++++.-|+.+ .++..+..+|...|-.++|.+.-+-+ ..+.+
T Consensus 174 aryY~k---r~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl-~~N~p 235 (254)
T COG4105 174 ARYYLK---RGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVL-GANYP 235 (254)
T ss_pred HHHHHH---hcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHH-HhcCC
Confidence 345777 8899999999999998876644 45567778899999999998875444 44443
No 269
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.68 E-value=0.45 Score=38.44 Aligned_cols=70 Identities=13% Similarity=-0.026 Sum_probs=32.7
Q ss_pred hcCChHHHHHHHHhC-CCCCCHHHHHHHHHH-HccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 048578 379 RARLLDEAYEVIRNM-PMEPNAVLWGSLLTA-CASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQ 451 (519)
Q Consensus 379 ~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~-~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (519)
+.++.+++..++..+ -++|.......+-.. +.. .|++.+|.++|+.+.+..|..+..-..++.++...|+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~---r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIV---RGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHH---hCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 445555555555555 334433332222211 334 4555555555555555555444444444444444443
No 270
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.66 E-value=0.38 Score=43.10 Aligned_cols=61 Identities=21% Similarity=0.342 Sum_probs=42.9
Q ss_pred HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 401 LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 401 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
++..++..+.. .|+++.+...+++.+..+|-+...|..++.+|.+.|+...|+..|+++..
T Consensus 155 ~l~~lae~~~~---~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIA---CGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHh---cccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34445556666 66777777777777777777777777777777777777777777776653
No 271
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.62 E-value=2.7 Score=43.14 Aligned_cols=147 Identities=11% Similarity=0.042 Sum_probs=95.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh
Q 048578 167 LTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGAS 246 (519)
Q Consensus 167 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 246 (519)
.....+.+.+.|++++|...|-+....-.. ..+|.-|....+...-..+++.+.+.|+. +...-..|+.+|.+.++.
T Consensus 371 ~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~ 447 (933)
T KOG2114|consen 371 HRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDV 447 (933)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcch
Confidence 344456677889999998877665441111 23566667777777778888888888865 555667889999999998
Q ss_pred HHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 048578 247 ELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQ 323 (519)
Q Consensus 247 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 323 (519)
++..++.+... .|.. ..-....+..+.+.+-+++|..+-.+... +......++ -..+++++|++.+..+.
T Consensus 448 ~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 448 EKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 88777665544 2211 11134556667777777777776655444 333333333 35678888888887653
No 272
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.59 E-value=0.24 Score=41.15 Aligned_cols=101 Identities=12% Similarity=0.087 Sum_probs=53.4
Q ss_pred HHhccCcHHHHHHHHHHcHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHccc
Q 048578 340 ACSHAGLIEKGKEIFYNMRRDYKVEPN-----VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNA-VLWGSLLTACASA 412 (519)
Q Consensus 340 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~ 412 (519)
-+...|++++|..-|..... .+++. ...|..-.-++.+.+.++.|++-..+. .+.|+. .....-..+|..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek- 180 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK- 180 (271)
T ss_pred HhhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh-
Confidence 35666777777777777666 23322 223444445556666666666555444 444422 122222233444
Q ss_pred cCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 048578 413 DDGANVELAEIAMERLIKLEPFNDGNYVLMSNI 445 (519)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (519)
...++.|++-|+++.+.+|....+....+++
T Consensus 181 --~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 181 --MEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred --hhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 5566666666666666666654444444443
No 273
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.56 E-value=0.4 Score=38.01 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 415 GANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
.++.+.+..+++.+.-+.|..+..-..-++.+...|+|++|.++|+.+.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 4556666666666666666666665666666666666666666666665544
No 274
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.55 E-value=1.7 Score=36.43 Aligned_cols=96 Identities=13% Similarity=0.028 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHH--HH
Q 048578 298 TWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDV--TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYG--CL 373 (519)
Q Consensus 298 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~l 373 (519)
.+..+...|.+.|+.+.|.+.|.++.+....+... .+..+|+.+...+++..+...+.+...-..-..|...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 46667777788888888888888877765555443 566777777777888887777776655211111111111 11
Q ss_pred H--HHHHhcCChHHHHHHHHhC
Q 048578 374 V--DLLCRARLLDEAYEVIRNM 393 (519)
Q Consensus 374 ~--~~~~~~~~~~~A~~~~~~~ 393 (519)
. -.+...+++.+|-+.|-..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 1 1234567888888877766
No 275
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.52 E-value=0.14 Score=31.39 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=28.8
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 048578 436 DGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (519)
|.++..++.+|.+.|++++|.+++++..+....
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 457889999999999999999999999886543
No 276
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.36 E-value=5 Score=34.93 Aligned_cols=86 Identities=10% Similarity=0.051 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048578 164 IHSLTRLITFYCNFGDVKSAQLLFDQMTE---KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSAC 240 (519)
Q Consensus 164 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 240 (519)
...|..-..+|-...++++|...+.+..+ .|...|. ..+.++.|.-+.++|.+. .--...|......|
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 34555566677777888888777666542 2222221 222234444444444332 11122344444556
Q ss_pred hccCChHHHHHHHHHHHH
Q 048578 241 ANLGASELGKWVHEFVNK 258 (519)
Q Consensus 241 ~~~~~~~~a~~~~~~~~~ 258 (519)
...|.++.|-..+++.-+
T Consensus 102 ~E~GspdtAAmaleKAak 119 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAK 119 (308)
T ss_pred HHhCCcchHHHHHHHHHH
Confidence 666666666555555433
No 277
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.32 E-value=0.27 Score=27.78 Aligned_cols=30 Identities=30% Similarity=0.269 Sum_probs=15.2
Q ss_pred HHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 402 WGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 402 ~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
+..+...+.. .|++++|++.++++++++|+
T Consensus 4 ~~~lg~~~~~---~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 4 WYYLGQAYYQ---LGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHH---TT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHH---hCCHHHHHHHHHHHHHHCcC
Confidence 3334444555 55555555555555555554
No 278
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.24 E-value=0.2 Score=28.44 Aligned_cols=31 Identities=23% Similarity=0.122 Sum_probs=15.8
Q ss_pred HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 401 LWGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 401 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
+|..+...+.. .|++++|...++++++++|+
T Consensus 3 ~~~~~g~~~~~---~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQ---LGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHH---TT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHH---hCCchHHHHHHHHHHHHCcC
Confidence 34444445555 55555555555555555553
No 279
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.13 E-value=11 Score=39.23 Aligned_cols=198 Identities=13% Similarity=0.053 Sum_probs=107.4
Q ss_pred HHhcCCHHHHHHHHhhcC----CCCh-------hhHHHHHH-HHHHcCChHHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 048578 275 YAKCGYIEEALRVFKIVL----EKNV-------CTWNSIIG-GLAIHGCGEEAVKMFWQMQMS----GIKPDDVTLIAVL 338 (519)
Q Consensus 275 ~~~~g~~~~a~~~~~~~~----~~~~-------~~~~~l~~-~~~~~g~~~~a~~~~~~m~~~----g~~p~~~~~~~l~ 338 (519)
.....++++|..+..++. .++. ..|+++-. .....|+++.|+++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345678888888876652 2221 13444432 334568889988888776543 2234445667777
Q ss_pred HHHhccCcHHHHHHHHHHcHHhcCCCCChhH---HHHHH--HHHHhcCChHHH--HHHHHhC-----CCCC----CHHHH
Q 048578 339 TACSHAGLIEKGKEIFYNMRRDYKVEPNVKH---YGCLV--DLLCRARLLDEA--YEVIRNM-----PMEP----NAVLW 402 (519)
Q Consensus 339 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~--~~~~~~~~~~~A--~~~~~~~-----~~~p----~~~~~ 402 (519)
.+..-.|++++|..+.....+. .-.-+... |..+. ..+...|+...+ ...|... +-+| -..+.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 7788889999998887766552 11223333 32222 234556633333 2222222 1122 12244
Q ss_pred HHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccE
Q 048578 403 GSLLTACASADDGANVELAEIAMERLIKLEPFND---GNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSV 475 (519)
Q Consensus 403 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 475 (519)
..++.++.+ -.+...++..-++-.....|..- ..+..|+.++...|+.++|...+.++......+.+..+|
T Consensus 584 ~~ll~~~~r--~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 584 AQLLRAWLR--LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred HHHHHHHHH--HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
Confidence 444444433 02222233333333222333321 122378888899999999999999998776665555444
No 280
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.10 E-value=3.8 Score=32.77 Aligned_cols=40 Identities=13% Similarity=0.053 Sum_probs=16.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 048578 201 MINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACA 241 (519)
Q Consensus 201 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 241 (519)
++..+...+.+.....+++.+...+ ..+....+.++..|+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~ 52 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYA 52 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHH
Confidence 3444444444444444444444333 123333334444433
No 281
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.04 E-value=2.8 Score=34.26 Aligned_cols=50 Identities=8% Similarity=0.003 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHHhhC-CCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 415 GANVELAEIAMERLIKLE-PFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
.|.++......+-+-.-+ |--......|+.+-.+.|++.+|.+.|+.+..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 445554444444332221 32333444555555566666666666655543
No 282
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.55 E-value=9.7 Score=36.10 Aligned_cols=152 Identities=11% Similarity=-0.036 Sum_probs=76.3
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC--hhH
Q 048578 295 NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKP---DDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN--VKH 369 (519)
Q Consensus 295 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~ 369 (519)
...+|..++..+.+.|.++.|...+..+...+... .......-++..-..|+..+|...++...+. .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44567777777778888888888777776533111 2234444455566677777777777766651 11111 111
Q ss_pred HHHHHHHHHhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHccc---cCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 048578 370 YGCLVDLLCRARLLDEAYEV-IRNMPMEPNAVLWGSLLTACASA---DDGANVELAEIAMERLIKLEPFNDGNYVLMSNI 445 (519)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~~---~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (519)
...+...+.. ..+..... ........-...+..+...+... -..++.+.+...|..+.+..|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 00000000011222222222220 015788999999999999998888888877777
Q ss_pred HHhc
Q 048578 446 YAAK 449 (519)
Q Consensus 446 ~~~~ 449 (519)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6544
No 283
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.51 E-value=2.1 Score=35.89 Aligned_cols=94 Identities=16% Similarity=0.045 Sum_probs=63.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCC-ChhHHHHHHHH
Q 048578 303 IGGLAIHGCGEEAVKMFWQMQMSGIKPDDV-----TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEP-NVKHYGCLVDL 376 (519)
Q Consensus 303 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~ 376 (519)
..-+.+.|++++|..-|.+.++. +++... .|..-..++.+.+.++.|+.-..+..+ +.| .......-..+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAea 177 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAEA 177 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHHH
Confidence 34567789999999999988875 233322 344445577888888888888777776 223 22333344567
Q ss_pred HHhcCChHHHHHHHHhC-CCCCCHH
Q 048578 377 LCRARLLDEAYEVIRNM-PMEPNAV 400 (519)
Q Consensus 377 ~~~~~~~~~A~~~~~~~-~~~p~~~ 400 (519)
|.+...+++|++-|+++ ...|...
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchH
Confidence 88888888998888887 5556543
No 284
>PRK09687 putative lyase; Provisional
Probab=92.49 E-value=8.3 Score=35.19 Aligned_cols=79 Identities=9% Similarity=-0.009 Sum_probs=35.0
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCCh----hHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048578 162 SVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNY----REGIDLFRKMRDSGVEVNELTLVSVL 237 (519)
Q Consensus 162 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~~~~~~~~~~~~ll 237 (519)
++..+....+..+...|..+-...+..-+..+|...-...+.++.+.|+. +++...+..+... .++...-...+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 33334444444454445433333333322334555555555555665553 3455555554332 34444444444
Q ss_pred HHHhc
Q 048578 238 SACAN 242 (519)
Q Consensus 238 ~~~~~ 242 (519)
.++..
T Consensus 113 ~aLG~ 117 (280)
T PRK09687 113 NATGH 117 (280)
T ss_pred HHHhc
Confidence 44433
No 285
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.42 E-value=2.5 Score=34.57 Aligned_cols=134 Identities=10% Similarity=0.064 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchh-HHHH--H
Q 048578 196 VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNEL-TLVSVLSACANLGASELGKWVHEFVNKNCIILNDK-LGAA--L 271 (519)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~--l 271 (519)
..|..-+. +.+.+..++|+.-|..+.+.|...=+. .--.......+.|+-..|...|.++-.....|... -... -
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34443333 355666677777777776665321111 11112223456667777777777766554333222 1111 1
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC-C---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 048578 272 TDMYAKCGYIEEALRVFKIVLEK-N---VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPD 330 (519)
Q Consensus 272 ~~~~~~~g~~~~a~~~~~~~~~~-~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 330 (519)
.-.+...|.+++...-.+-+..+ + ...-.+|.-+-.+.|++.+|...|..+......|.
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 22355677777777776666433 1 22344566666778888888888888766444443
No 286
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.24 E-value=10 Score=35.94 Aligned_cols=68 Identities=19% Similarity=0.235 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC----CCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 048578 398 NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF----NDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 398 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (519)
...+|..+...+.+ .|.++.|...+.++.+.++. .+.....-+..+...|+.++|...++......+.
T Consensus 145 ~~~~~l~~a~~aRk---~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 145 LAETWLKFAKLARK---AGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS 216 (352)
T ss_pred HHHHHHHHHHHHHH---CCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 44578888888888 99999999999998876522 4677788899999999999999999888874443
No 287
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.90 E-value=8.4 Score=33.95 Aligned_cols=158 Identities=12% Similarity=0.006 Sum_probs=85.4
Q ss_pred HHhcCCHHHHHHHHhhcCCC------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHH--HHHHHHHHHhcc-
Q 048578 275 YAKCGYIEEALRVFKIVLEK------NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMS-GIKPDDV--TLIAVLTACSHA- 344 (519)
Q Consensus 275 ~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~--~~~~l~~~~~~~- 344 (519)
-.+.|++++|.+.|+.+..+ ...+.-.++.++-+.++++.|+..+++.... +-.||.. .|...+.-+...
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 34556677777777666443 1233444556666777777777777776553 2233332 222222222211
Q ss_pred ---CcHH---HHHHHHHHcHHhcCC---CCChhH------------HHHHHHHHHhcCChHHHHHHHHhC--C--CCC-C
Q 048578 345 ---GLIE---KGKEIFYNMRRDYKV---EPNVKH------------YGCLVDLLCRARLLDEAYEVIRNM--P--MEP-N 398 (519)
Q Consensus 345 ---g~~~---~a~~~~~~~~~~~~~---~~~~~~------------~~~l~~~~~~~~~~~~A~~~~~~~--~--~~p-~ 398 (519)
.|.. .|..-|+.+..++.- .||... =..+.+-|.+.|.+-.|..-+++| . -.+ .
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~ 203 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAV 203 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccch
Confidence 2222 334444444442211 122111 123556788899999888888887 2 122 2
Q ss_pred HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC
Q 048578 399 AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN 435 (519)
Q Consensus 399 ~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (519)
...+-.+..+|.. .|-.++|.+.-+-+....|++
T Consensus 204 ~eaL~~l~eaY~~---lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 204 REALARLEEAYYA---LGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHHHHHH---hCChHHHHHHHHHHHhcCCCC
Confidence 3356667778888 888888877665544444554
No 288
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.71 E-value=3.3 Score=40.07 Aligned_cols=48 Identities=13% Similarity=-0.031 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHHHhhCCC--CCchHHHHHHHHHhcCCchHHHHHHHHH
Q 048578 415 GANVELAEIAMERLIKLEPF--NDGNYVLMSNIYAAKAQWDDAGKMRRLM 462 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (519)
.|+.++|++.++.+.+..|. +-.....|+.++...+.+.++..++.+-
T Consensus 272 lGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 272 LGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 55666666666666555443 2335555666666666666666666554
No 289
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.33 E-value=2.3 Score=38.29 Aligned_cols=77 Identities=8% Similarity=0.182 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHH----hcCCCCChhHHHHHH
Q 048578 299 WNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRR----DYKVEPNVKHYGCLV 374 (519)
Q Consensus 299 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~ 374 (519)
+..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ ..|+.|...+...+.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 3344444445555555555555554432 33444555555555555555555555444433 235555555544443
Q ss_pred HH
Q 048578 375 DL 376 (519)
Q Consensus 375 ~~ 376 (519)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 33
No 290
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.32 E-value=25 Score=38.19 Aligned_cols=25 Identities=12% Similarity=0.262 Sum_probs=14.4
Q ss_pred HHHHHHHHHcC--ChhHHHHHHHHHHh
Q 048578 199 TAMINGHVKQK--NYREGIDLFRKMRD 223 (519)
Q Consensus 199 ~~li~~~~~~~--~~~~a~~~~~~m~~ 223 (519)
..+|..|++.+ .++.+++...+...
T Consensus 794 ~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 794 LFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 35566666666 55566655555543
No 291
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.31 E-value=17 Score=36.21 Aligned_cols=118 Identities=14% Similarity=-0.002 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-----CCCCCHHHHHHHH
Q 048578 332 VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-----PMEPNAVLWGSLL 406 (519)
Q Consensus 332 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-----~~~p~~~~~~~ll 406 (519)
.+|...+.--...|+.+.+.-.|+...- .+..=...|-..++-....|+.+-|..++... +-.|....+.+.+
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3555555555566666666666665544 11122334444444444556666665555444 2223333332222
Q ss_pred HHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHH
Q 048578 407 TACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAG 456 (519)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 456 (519)
. -. .|+++.|..+++.+.+.-|.....-..-+....+.|+.+.+.
T Consensus 376 ~--e~---~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 376 E--ES---NGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred H--Hh---hccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 1 12 456666666666666555554444444455555566666555
No 292
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.30 E-value=7.3 Score=32.08 Aligned_cols=135 Identities=12% Similarity=0.146 Sum_probs=78.3
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhc-CChHHHHHHHhcCCCCc
Q 048578 116 IQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNF-GDVKSAQLLFDQMTEKN 194 (519)
Q Consensus 116 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~ 194 (519)
++.+..+.+.|++|+...+..++..+.+.|...++...+.-.- ++++...-..|++.-.+. .-..-|..++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~V-i~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~--- 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHV-IPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG--- 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc-cCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh---
Confidence 4455556667788888888888888888887666666655544 444444444443322111 11344555555543
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 048578 195 VVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKN 259 (519)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 259 (519)
..+..+++.+...|++-+|+++.+..... +......++.+..+.+|...-..++......
T Consensus 90 -~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 -TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred -hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 24566778888888888888887765322 1122234555655666655555555554443
No 293
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.28 E-value=12 Score=38.61 Aligned_cols=32 Identities=25% Similarity=0.464 Sum_probs=19.5
Q ss_pred hhHHHHHHHH-----HHhcCChHHHHHHHHhCCCCCC
Q 048578 367 VKHYGCLVDL-----LCRARLLDEAYEVIRNMPMEPN 398 (519)
Q Consensus 367 ~~~~~~l~~~-----~~~~~~~~~A~~~~~~~~~~p~ 398 (519)
..|+..|++. +...|++++|++.++++++-|.
T Consensus 500 ~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~liP~ 536 (613)
T PF04097_consen 500 RETFQLLLDLAEFFDLYHAGQYEQALDIIEKLDLIPL 536 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-S-S
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 3455544443 4578888888888888877773
No 294
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.14 E-value=0.57 Score=27.07 Aligned_cols=25 Identities=12% Similarity=0.244 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHH
Q 048578 197 TWTAMINGHVKQKNYREGIDLFRKM 221 (519)
Q Consensus 197 ~~~~li~~~~~~~~~~~a~~~~~~m 221 (519)
+|+.|...|.+.|++++|+++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3556666667777777777766663
No 295
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.09 E-value=16 Score=35.62 Aligned_cols=176 Identities=12% Similarity=0.049 Sum_probs=93.7
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048578 263 LNDKLGAALTDMYAKCGYIEEALRVFKIVLE--KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTA 340 (519)
Q Consensus 263 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 340 (519)
.|.....+++..+.......-.+.+-.+|.. .+-..+..+++.|..+ ..+.-..+|+++.+. ..|...+.--+.-
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHH
Confidence 3444444555555555455445555444432 3445566666666666 456666677766664 2333333333333
Q ss_pred HhccCcHHHHHHHHHHcHHhcCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHc
Q 048578 341 CSHAGLIEKGKEIFYNMRRDYKVEPN------VKHYGCLVDLLCRARLLDEAYEVIRNM----PMEPNAVLWGSLLTACA 410 (519)
Q Consensus 341 ~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~ 410 (519)
+...++.+.+..+|.++... +-|. ...|..+...- ..+.+..+.+..++ |..--...+.-+..-|.
T Consensus 141 ~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 33346666777777666652 2221 12343333211 33455555555554 33333444555555566
Q ss_pred cccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 048578 411 SADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAA 448 (519)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 448 (519)
. ..++++|++++..+++.+..|.-+...++.-+..
T Consensus 217 ~---~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 217 E---NENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred c---ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 6 7788888888887777776666555555554443
No 296
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=90.76 E-value=3 Score=32.54 Aligned_cols=20 Identities=15% Similarity=0.091 Sum_probs=10.0
Q ss_pred CCCHHHHHHHHHHHHhhCCC
Q 048578 415 GANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~ 434 (519)
.++++.+.++.+.+++.+|+
T Consensus 84 lkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 84 LKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred HhhHHHHHHHHHHHHhhCCC
Confidence 44555555555555554444
No 297
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.76 E-value=2 Score=31.57 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHH
Q 048578 313 EEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVD 375 (519)
Q Consensus 313 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 375 (519)
-+..+-+..+....+.|+.....+.+++|.+.+++..|.++|+.++.+.+.. ...|..+++
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 3566677777777889999999999999999999999999999998865543 336766654
No 298
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.60 E-value=0.34 Score=25.56 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=19.9
Q ss_pred chHHHHHHHHHhcCCchHHHHHHH
Q 048578 437 GNYVLMSNIYAAKAQWDDAGKMRR 460 (519)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~ 460 (519)
.+...++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456788889999999999988876
No 299
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.57 E-value=42 Score=39.54 Aligned_cols=283 Identities=9% Similarity=-0.009 Sum_probs=144.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhc-CCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 048578 166 SLTRLITFYCNFGDVKSAQLLFDQ-MTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLG 244 (519)
Q Consensus 166 ~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 244 (519)
.+..+...|+.-++.|....+... ...|+. ..-|......|+++.|...|+.+.+.+ ++...+++-++......+
T Consensus 1422 l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~ 1497 (2382)
T KOG0890|consen 1422 LYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQ 1497 (2382)
T ss_pred HHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhccc
Confidence 344445577777777777766653 333332 234445567788888888888887663 223556666666666666
Q ss_pred ChHHHHHHHHHHHHcCCCcchhHH-HHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHH--HHHHHHcC--ChHHHHHHH
Q 048578 245 ASELGKWVHEFVNKNCIILNDKLG-AALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSI--IGGLAIHG--CGEEAVKMF 319 (519)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l--~~~~~~~g--~~~~a~~~~ 319 (519)
.++...-..+-..... .+....+ +.=+.+--+.++++....... ..+...|... ...+.+.. +.-.-.+..
T Consensus 1498 ~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i 1573 (2382)
T KOG0890|consen 1498 HLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLI 1573 (2382)
T ss_pred chhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHH
Confidence 6666555443333322 2222222 222444456666666666555 4455555444 22222221 111111223
Q ss_pred HHHHHCCCCC--------C-HHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC------hhHHHHHHHHHHhcCChH
Q 048578 320 WQMQMSGIKP--------D-DVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN------VKHYGCLVDLLCRARLLD 384 (519)
Q Consensus 320 ~~m~~~g~~p--------~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~ 384 (519)
+.+++.-+.| + ...|..++....-. +.+.-.+.+. ++.++ ..-|..-+..-....+..
T Consensus 1574 ~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~~l~------~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~ 1646 (2382)
T KOG0890|consen 1574 ENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIEELK------KVSYDEDSANNSDNWKNRLERTQPSFRIK 1646 (2382)
T ss_pred HHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHHHhh------ccCccccccccchhHHHHHHHhchhHHHH
Confidence 3222211111 0 01233332221110 0111111111 22222 122322222211111122
Q ss_pred HHHHHHHhC----CCCC-----CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHH
Q 048578 385 EAYEVIRNM----PMEP-----NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDA 455 (519)
Q Consensus 385 ~A~~~~~~~----~~~p-----~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 455 (519)
+-+--+++. ..+| -..+|....+.+.. .|.++.|...+-.+.+..+ +.++...+..+...|+-..|
T Consensus 1647 epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~---aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~A 1721 (2382)
T KOG0890|consen 1647 EPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARL---AGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNA 1721 (2382)
T ss_pred hHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHh---cccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHH
Confidence 221112211 1122 23467777777777 8999999998888777773 67999999999999999999
Q ss_pred HHHHHHHHhCCCc
Q 048578 456 GKMRRLMKERNIV 468 (519)
Q Consensus 456 ~~~~~~m~~~~~~ 468 (519)
+.++++-.+.+.+
T Consensus 1722 l~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1722 LSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHHHHhhcc
Confidence 9999999876654
No 300
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.49 E-value=0.35 Score=27.38 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=25.8
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 437 GNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
.+|..++.+|...|++++|+..+++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 478899999999999999999999987644
No 301
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.44 E-value=0.35 Score=27.27 Aligned_cols=30 Identities=10% Similarity=0.155 Sum_probs=25.4
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 437 GNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
..+..++.+|.+.|++++|.+.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 468899999999999999999999987643
No 302
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.42 E-value=4.3 Score=34.03 Aligned_cols=62 Identities=11% Similarity=0.087 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHHHH
Q 048578 197 TWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNE--LTLVSVLSACANLGASELGKWVHEFVNK 258 (519)
Q Consensus 197 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 258 (519)
.+..+...|++.|+.+.|.+.|.++.+....+.. ..+-.+++.+.-.+++..+.....++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4455555555666666666666555554322222 2334444555555555555555444433
No 303
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.33 E-value=2.1 Score=31.06 Aligned_cols=63 Identities=14% Similarity=0.180 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHH
Q 048578 311 CGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVD 375 (519)
Q Consensus 311 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 375 (519)
+.-++.+-++.+....+.|+.....+.+++|.+.+++..|.++|+.++.+.+. +...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 44566777777777888999999999999999999999999999988864443 4446665553
No 304
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.11 E-value=9.5 Score=31.42 Aligned_cols=123 Identities=14% Similarity=0.106 Sum_probs=73.1
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccc--hHHHHHHHHHhCCCCCchhHHHH
Q 048578 92 INPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQ--VKGVHSLVVKSKDFNSVIHSLTR 169 (519)
Q Consensus 92 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 169 (519)
..++...|..++..+.+.|++.. +..+...++-+|.......+-.+..... .+-..+.+.+.+ ..+..
T Consensus 25 i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~------~~~~~ 94 (167)
T PF07035_consen 25 IPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG------TAYEE 94 (167)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh------hhHHH
Confidence 44556666667777776665433 3344455555666655555544433322 222222222222 13556
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 048578 170 LITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDS 224 (519)
Q Consensus 170 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (519)
++..+...|++-+|.++.+.....+......++.+..+.+|...-..+|+-....
T Consensus 95 iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 95 IIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6778888999999999998865555555566777777777776666666655554
No 305
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.74 E-value=16 Score=33.56 Aligned_cols=136 Identities=15% Similarity=0.231 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc--cC----ChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHH
Q 048578 211 YREGIDLFRKMRDSGVEVNELTLVSVLSACAN--LG----ASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEA 284 (519)
Q Consensus 211 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 284 (519)
+++.+.+++.|.+.|+.-+..+|.+....... .. ....+..+++.|.+...-.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fL--------------------- 136 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFL--------------------- 136 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccc---------------------
Confidence 34556788889999888887777664433322 11 2334555666665543110
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHcCC----hHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCc--HHHHHHHHHH
Q 048578 285 LRVFKIVLEKNVCTWNSIIGGLAIHGC----GEEAVKMFWQMQMSGIKPDDV--TLIAVLTACSHAGL--IEKGKEIFYN 356 (519)
Q Consensus 285 ~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~--~~~a~~~~~~ 356 (519)
..++-..+..++.. ..++ .+.++.+|+.+.+.|+..+.. ....++..+..... ..++..+++.
T Consensus 137 -------Ts~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~ 207 (297)
T PF13170_consen 137 -------TSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNA 207 (297)
T ss_pred -------cCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 00112222222222 1112 245667777777777655443 34444433333322 3467778888
Q ss_pred cHHhcCCCCChhHHHHHHHHH
Q 048578 357 MRRDYKVEPNVKHYGCLVDLL 377 (519)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~ 377 (519)
+.+ .++++....|..+.-..
T Consensus 208 l~~-~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 208 LKK-NGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHH-cCCccccccccHHHHHH
Confidence 877 48887777766554433
No 306
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=89.42 E-value=6.8 Score=28.74 Aligned_cols=88 Identities=13% Similarity=0.146 Sum_probs=58.9
Q ss_pred ChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048578 245 ASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQM 324 (519)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 324 (519)
..++|..|-+.+...+.. ...+--+-+..+...|+|++|..+.+...-||...|.++-. .+.|..+.+...+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 345555555555554321 22222223456778899999999999888889888877765 467777888888888887
Q ss_pred CCCCCCHHHHHH
Q 048578 325 SGIKPDDVTLIA 336 (519)
Q Consensus 325 ~g~~p~~~~~~~ 336 (519)
+| .|....|..
T Consensus 97 sg-~p~lq~Faa 107 (115)
T TIGR02508 97 SG-DPRLQTFVA 107 (115)
T ss_pred CC-CHHHHHHHH
Confidence 77 666555543
No 307
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.30 E-value=37 Score=36.99 Aligned_cols=108 Identities=21% Similarity=0.169 Sum_probs=50.1
Q ss_pred HHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 048578 275 YAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIF 354 (519)
Q Consensus 275 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 354 (519)
-.+.|.+++|+.++.--.+.-...|.+...-+.....+++|.-.|+..=+ ..-.+.+|...|+|.+|+.+.
T Consensus 918 I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a 988 (1265)
T KOG1920|consen 918 IKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLA 988 (1265)
T ss_pred HHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHH
Confidence 33444455555444332222223344444444455555555555443211 112344556666666666665
Q ss_pred HHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 048578 355 YNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM 393 (519)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 393 (519)
..+.. +-.--..+-..|+.-+...++.-+|-++..+.
T Consensus 989 ~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 989 AQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 55533 11111112244555566666666666666555
No 308
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.16 E-value=30 Score=35.75 Aligned_cols=64 Identities=19% Similarity=0.325 Sum_probs=37.1
Q ss_pred HHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHcc
Q 048578 336 AVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACAS 411 (519)
Q Consensus 336 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~ 411 (519)
..+..|.+.|-+++-.-++.+|-. ++.+|.-.--+.+++++|+++.++ .-|...|..||..+..
T Consensus 639 kA~eiC~q~~~~~E~VYlLgrmGn---------~k~AL~lII~el~die~AIefvKe---q~D~eLWe~LI~~~ld 702 (846)
T KOG2066|consen 639 KALEICSQKNFYEELVYLLGRMGN---------AKEALKLIINELRDIEKAIEFVKE---QDDSELWEDLINYSLD 702 (846)
T ss_pred HHHHHHHhhCcHHHHHHHHHhhcc---------hHHHHHHHHHHhhCHHHHHHHHHh---cCCHHHHHHHHHHhhc
Confidence 344455555555555555555521 333444444456677777777666 4477778888877655
No 309
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.94 E-value=0.9 Score=25.58 Aligned_cols=19 Identities=26% Similarity=0.281 Sum_probs=9.3
Q ss_pred CCCHHHHHHHHHHHHhhCC
Q 048578 415 GANVELAEIAMERLIKLEP 433 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p 433 (519)
.|++++|...|+++++.+|
T Consensus 14 ~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 14 LGDYEEALEYFEKALELNP 32 (34)
T ss_dssp TTSHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhhCC
Confidence 4445555555555444444
No 310
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=88.83 E-value=9.2 Score=34.43 Aligned_cols=112 Identities=12% Similarity=0.121 Sum_probs=67.0
Q ss_pred cCChhHHHHHHHHHHh-CCCCCCcchHHHHHHHHcCccc-----hHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHH
Q 048578 109 AGLGHRGIQLYTQMIG-NGLDPDSFTYPILLKACGDLRQ-----VKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKS 182 (519)
Q Consensus 109 ~g~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 182 (519)
+..+.+|+.+|+..-- ..+--|..+...+++......+ .-++.+.+....+..++..+...++..+++.+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3445566666663222 2344566666666666655222 444445554432245666667777777777777777
Q ss_pred HHHHHhcCCC-----CchhHHHHHHHHHHHcCChhHHHHHHHH
Q 048578 183 AQLLFDQMTE-----KNVVTWTAMINGHVKQKNYREGIDLFRK 220 (519)
Q Consensus 183 A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~ 220 (519)
-.++++.... .|...|...|+.-...|+..-..++.++
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 7777766543 3566777777777777776665555443
No 311
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.61 E-value=0.81 Score=27.20 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=23.3
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 437 GNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
.+++.|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678899999999999999999988864
No 312
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.29 E-value=0.099 Score=42.21 Aligned_cols=84 Identities=13% Similarity=0.239 Sum_probs=45.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChH
Q 048578 102 VIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVK 181 (519)
Q Consensus 102 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 181 (519)
++..+.+.+.++.....++.+...+...+....+.++..|++.++.+.+.+.+......+ ...++..|.+.|.++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd-----~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYD-----LDKALRLCEKHGLYE 87 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS------CTHHHHHHHTTTSHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccccC-----HHHHHHHHHhcchHH
Confidence 455555666666677777777665555555666666666666665555555554333211 223444455555555
Q ss_pred HHHHHHhcC
Q 048578 182 SAQLLFDQM 190 (519)
Q Consensus 182 ~A~~~~~~~ 190 (519)
+|.-++.++
T Consensus 88 ~a~~Ly~~~ 96 (143)
T PF00637_consen 88 EAVYLYSKL 96 (143)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHc
Confidence 555554444
No 313
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=88.19 E-value=9 Score=36.83 Aligned_cols=120 Identities=15% Similarity=0.109 Sum_probs=54.7
Q ss_pred HcCChHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 048578 308 IHGCGEEAVKMF-WQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEA 386 (519)
Q Consensus 308 ~~g~~~~a~~~~-~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 386 (519)
..|++-.|-+-+ ..++.....|+.....+.| +...|+++.+...+....+ -+.....+..++++...+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 345554443333 2333322334433333322 3455666666665555544 2333444555566666666666666
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 387 YEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 387 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
..+-+.| +-+. +............. .|-++++...++++..++|+
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~---l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADA---LQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHH---HhHHHHHHHHHHHHhccCCh
Confidence 6655555 2111 11111111111222 45556666666666665544
No 314
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.17 E-value=5 Score=36.28 Aligned_cols=100 Identities=14% Similarity=0.093 Sum_probs=67.5
Q ss_pred cCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-Ch-----hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 048578 259 NCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK-NV-----CTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDV 332 (519)
Q Consensus 259 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 332 (519)
.|.+....+...++..-....++++++..+-++... +. .+-.+.+..+ -.-++++++.++..=+.-|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 344555555556666666667777777777666442 11 1112223322 2346678888888878889999999
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHH
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRR 359 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (519)
+++.+|..+.+.+++..|..+...+..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999988888777665
No 315
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.87 E-value=29 Score=34.01 Aligned_cols=96 Identities=8% Similarity=0.023 Sum_probs=55.9
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048578 161 NSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE--KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLS 238 (519)
Q Consensus 161 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 238 (519)
+.+.....+++..+...-...-.+.+..+|.. .+-..|..++.+|... ..++-..+++++.+..+ +...+.--+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHH
Confidence 44555566666777766666666666666654 4555677777777766 56666777776666532 3333333333
Q ss_pred HHhccCChHHHHHHHHHHHHc
Q 048578 239 ACANLGASELGKWVHEFVNKN 259 (519)
Q Consensus 239 ~~~~~~~~~~a~~~~~~~~~~ 259 (519)
-+...++...+..+|..+..+
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yr 160 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHH
Confidence 333336666666666665544
No 316
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.76 E-value=0.57 Score=26.12 Aligned_cols=29 Identities=14% Similarity=0.182 Sum_probs=21.2
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 438 NYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
++..++.+|.+.|++++|.+.|+++.+..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 45567777888888888888888776543
No 317
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.64 E-value=1.1 Score=25.21 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=25.3
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 437 GNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
.+|..++.+|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998865
No 318
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.59 E-value=14 Score=30.10 Aligned_cols=69 Identities=16% Similarity=0.182 Sum_probs=41.2
Q ss_pred HHhccCcHHHHHHHHHHcHHhcCCCCChhHHH-HHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHcc
Q 048578 340 ACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYG-CLVDLLCRARLLDEAYEVIRNM-PMEPNAVLWGSLLTACAS 411 (519)
Q Consensus 340 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~ 411 (519)
.-...++.+.+..++..+.- +.|...... .-...+...|+|.+|..+|+++ .-.|.......|+..|..
T Consensus 19 ~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 34456677777777777754 334322221 2234456778888888888887 434555555556655555
No 319
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.55 E-value=23 Score=32.59 Aligned_cols=148 Identities=14% Similarity=0.185 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cC----cHHHHHHHHHHcHHhcCCC--CChhHHHHHHHHHHhcCCh
Q 048578 312 GEEAVKMFWQMQMSGIKPDDVTLIAVLTACSH--AG----LIEKGKEIFYNMRRDYKVE--PNVKHYGCLVDLLCRARLL 383 (519)
Q Consensus 312 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 383 (519)
+++.+.+++.|.+.|+.-+..+|.+....... .. ...+|..+|+.|++++.+- ++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34567788888999888887776654333332 22 3567889999999866543 333444444332 34444
Q ss_pred HH----HHHHHHhC---CCCC-CH-HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC-CCchHHHHHHHHHhcCCch
Q 048578 384 DE----AYEVIRNM---PMEP-NA-VLWGSLLTACASADDGANVELAEIAMERLIKLEPF-NDGNYVLMSNIYAAKAQWD 453 (519)
Q Consensus 384 ~~----A~~~~~~~---~~~p-~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~ 453 (519)
+. +...|+.+ |+.. |. .....++..+.... ...+.++.++++.+.+.+-. ....|..++-+-.-.+..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~-~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~ 234 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDD-QEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEE 234 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccc-hHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchH
Confidence 33 33444444 5544 33 33344443333311 22255777888888877733 3344555544444444442
Q ss_pred HHHHHHHHH
Q 048578 454 DAGKMRRLM 462 (519)
Q Consensus 454 ~A~~~~~~m 462 (519)
+..+-+.++
T Consensus 235 ~~~~~i~ev 243 (297)
T PF13170_consen 235 KIVEEIKEV 243 (297)
T ss_pred HHHHHHHHH
Confidence 444444444
No 320
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.28 E-value=8.9 Score=38.04 Aligned_cols=151 Identities=18% Similarity=0.103 Sum_probs=101.8
Q ss_pred HhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 048578 276 AKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFY 355 (519)
Q Consensus 276 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 355 (519)
.-.|+++.|..++..+.+ ..-+.+++.+.+.|-.++|+++- ..||. -| ....+.|+++.|.++..
T Consensus 597 vmrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s-------~D~d~-rF----elal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELS-------TDPDQ-RF----ELALKLGRLDIAFDLAV 661 (794)
T ss_pred hhhccccccccccccCch---hhhhhHHhHhhhccchHhhhhcC-------CChhh-hh----hhhhhcCcHHHHHHHHH
Confidence 445777777776666553 23344556666777777776542 12222 22 23456789999888766
Q ss_pred HcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC
Q 048578 356 NMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN 435 (519)
Q Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (519)
+.. +..-|..|.++....+++..|.+.|.+.. -|..|+-.+.. .|+.+....+-....+.+..|
T Consensus 662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~---~g~~~~l~~la~~~~~~g~~N 725 (794)
T KOG0276|consen 662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTS---SGNAEGLAVLASLAKKQGKNN 725 (794)
T ss_pred hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhh---cCChhHHHHHHHHHHhhcccc
Confidence 553 45678999999999999999999998752 24556667777 777777777776666666654
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHH
Q 048578 436 DGNYVLMSNIYAAKAQWDDAGKMRRLM 462 (519)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (519)
.-..+|...|+++++.+++..-
T Consensus 726 -----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 -----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred -----hHHHHHHHcCCHHHHHHHHHhc
Confidence 3334677889999998887654
No 321
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.03 E-value=1.3 Score=40.36 Aligned_cols=99 Identities=14% Similarity=-0.019 Sum_probs=71.5
Q ss_pred HHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHccccC
Q 048578 337 VLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PME-PNAVLWGSLLTACASADD 414 (519)
Q Consensus 337 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~ 414 (519)
-.+-|.++|.+++|++.|..... -.+.++.++..-..+|.+..++..|..-.... .+. .-...|..-..+-..
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~--- 177 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES--- 177 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH---
Confidence 35678999999999999998875 23338889999999999999999887665554 221 112234444444344
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCchHH
Q 048578 415 GANVELAEIAMERLIKLEPFNDGNYV 440 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (519)
.|+..+|.+-++.++++.|.+-..--
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~~ELkK 203 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKNIELKK 203 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcccHHHHH
Confidence 78899999999999999998544433
No 322
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=86.93 E-value=17 Score=34.64 Aligned_cols=121 Identities=12% Similarity=0.051 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHH---hcCChHHHHHHHHhC--CCCCCHHHHHHH
Q 048578 331 DVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLC---RARLLDEAYEVIRNM--PMEPNAVLWGSL 405 (519)
Q Consensus 331 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~--~~~p~~~~~~~l 405 (519)
..|+..+-..|...|+.+.|.+++++..-.++ .++......+. ..|. .++ ...-|...|.++
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e-----~~~~~~F~~~~~~~~~g~--------~rL~~~~~eNR~fflal 106 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFE-----RAFHPSFSPFRSNLTSGN--------CRLDYRRPENRQFFLAL 106 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----HHHHHHhhhhhcccccCc--------cccCCccccchHHHHHH
Confidence 34677777777777777777777776653110 00000000000 0000 001 111244555555
Q ss_pred HHHHccccCCCCHHHHHHHHHHHHhhCCC-CCchHHHHHHHHH-hcCCchHHHHHHHHHHh
Q 048578 406 LTACASADDGANVELAEIAMERLIKLEPF-NDGNYVLMSNIYA-AKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 406 l~~~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 464 (519)
.......++.|-+..|.++.+-+.+++|. ||......++.|+ +.++++--.++.+....
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 54433333389999999999999999988 8888888888876 77888878887777654
No 323
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.81 E-value=2 Score=39.17 Aligned_cols=95 Identities=17% Similarity=0.031 Sum_probs=65.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcC
Q 048578 303 IGGLAIHGCGEEAVKMFWQMQMSGIKP-DDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRAR 381 (519)
Q Consensus 303 ~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (519)
..-|.+.|.+++|+..|..... +.| |.+++..-..+|.+...+..|+.=......- -..-+..|..-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHHHHHHh
Confidence 4568899999999999998776 456 8889999999999999998887766666541 1112234444444444455
Q ss_pred ChHHHHHHHHhC-CCCCCHHH
Q 048578 382 LLDEAYEVIRNM-PMEPNAVL 401 (519)
Q Consensus 382 ~~~~A~~~~~~~-~~~p~~~~ 401 (519)
...+|.+-++.. .+.|+..-
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH
Confidence 666666655555 67777443
No 324
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.01 E-value=46 Score=34.48 Aligned_cols=60 Identities=10% Similarity=0.025 Sum_probs=41.6
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccc-------hHHHHHHHHHh
Q 048578 97 FAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQ-------VKGVHSLVVKS 157 (519)
Q Consensus 97 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-------~~~~~~~~~~~ 157 (519)
..-=.+|-.|.+.|++++|.++..+... ........|...+..+...++ ..++.....+.
T Consensus 112 ~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~ 178 (613)
T PF04097_consen 112 DPIWALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQR 178 (613)
T ss_dssp EEHHHHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHH
T ss_pred CccHHHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 3344688889999999999999966654 356677888899999977644 34555555443
No 325
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.80 E-value=25 Score=31.23 Aligned_cols=242 Identities=17% Similarity=0.191 Sum_probs=138.9
Q ss_pred cCChHHHHHHHhcCCC----Cch---hHHHHHHHHHHHcCChhHHHHHHHHHHhC---C--CCCCHHHHHHHHHHHhccC
Q 048578 177 FGDVKSAQLLFDQMTE----KNV---VTWTAMINGHVKQKNYREGIDLFRKMRDS---G--VEVNELTLVSVLSACANLG 244 (519)
Q Consensus 177 ~g~~~~A~~~~~~~~~----~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~--~~~~~~~~~~ll~~~~~~~ 244 (519)
..+.++|+.-|+...+ ... .+...++..+.+.+++++.+..|.+|... . -.-+..+.+.+++......
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3467777777776644 222 24456778888888888888888777532 1 1234566777777766666
Q ss_pred ChHHHHHHHHHHHHc-----CCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC----C-----------ChhhHHHHHH
Q 048578 245 ASELGKWVHEFVNKN-----CIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE----K-----------NVCTWNSIIG 304 (519)
Q Consensus 245 ~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-----------~~~~~~~l~~ 304 (519)
+.+....+++.-++. +-..--.+-..|...|...|++.+...++.++.. . -...|..-|+
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 666655555543321 1111222334677778888888888777776622 1 1245777778
Q ss_pred HHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHH-----hccCcHHHHHHHHHHcHHhc---CCCCC--hhHHHHH
Q 048578 305 GLAIHGCGEEAVKMFWQMQMSG-IKPDDVTLIAVLTAC-----SHAGLIEKGKEIFYNMRRDY---KVEPN--VKHYGCL 373 (519)
Q Consensus 305 ~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l 373 (519)
.|....+-...-.++++...-. ..|- .....+|+-| .+.|++++|..=|-+..+.+ |.+.. .--|..|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPH-PlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPH-PLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCc-hHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 8888777777777777764321 2333 2344455555 35688888865554444422 32222 2234555
Q ss_pred HHHHHhcCC----hHHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHH
Q 048578 374 VDLLCRARL----LDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMER 427 (519)
Q Consensus 374 ~~~~~~~~~----~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~ 427 (519)
..++.+.|- -.+|. -..-.|.......++.+|.. +++.+-++++..
T Consensus 279 ANMLmkS~iNPFDsQEAK----PyKNdPEIlAMTnlv~aYQ~----NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 279 ANMLMKSGINPFDSQEAK----PYKNDPEILAMTNLVAAYQN----NDIIEFERILKS 328 (440)
T ss_pred HHHHHHcCCCCCcccccC----CCCCCHHHHHHHHHHHHHhc----ccHHHHHHHHHh
Confidence 666666552 11111 01234566677888888875 455555555443
No 326
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.70 E-value=20 Score=30.17 Aligned_cols=88 Identities=14% Similarity=0.021 Sum_probs=38.5
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHHH-----HHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 048578 375 DLLCRARLLDEAYEVIRNMPMEPNAVLWGSL-----LTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAK 449 (519)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~l-----l~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 449 (519)
..+..++++++|...++..--.|....+..+ .+.... .|.++.|...++.....+- .+.....-++++...
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q---~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~k 172 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ---QKKADAALKTLDTIKEESW-AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH---hhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHc
Confidence 3445555555555555543112222222222 222333 4555555555443222111 122333445555555
Q ss_pred CCchHHHHHHHHHHhCC
Q 048578 450 AQWDDAGKMRRLMKERN 466 (519)
Q Consensus 450 g~~~~A~~~~~~m~~~~ 466 (519)
|+-++|+.-|++..+.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 55555555555555443
No 327
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.55 E-value=1 Score=36.27 Aligned_cols=53 Identities=13% Similarity=0.011 Sum_probs=27.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 048578 202 INGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHE 254 (519)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 254 (519)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44444555555555555555554444445555556666666555555544444
No 328
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.38 E-value=5.1 Score=33.90 Aligned_cols=74 Identities=16% Similarity=0.113 Sum_probs=51.0
Q ss_pred hcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC----CCchHHHHHHHHHhcCCc
Q 048578 379 RARLLDEAYEVIRNMPMEP--NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF----NDGNYVLMSNIYAAKAQW 452 (519)
Q Consensus 379 ~~~~~~~A~~~~~~~~~~p--~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~ 452 (519)
+.|+ ++|.+.|-.+.-.| +.......+..|.. ..|.+++..++-+++++.+. |+..+..|+.+|.+.|++
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~---krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYT---KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 3344 56777776661122 33444444444444 56899999999999886522 688999999999999999
Q ss_pred hHHH
Q 048578 453 DDAG 456 (519)
Q Consensus 453 ~~A~ 456 (519)
++|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8874
No 329
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.83 E-value=8 Score=28.22 Aligned_cols=46 Identities=13% Similarity=0.120 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 048578 213 EGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNK 258 (519)
Q Consensus 213 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 258 (519)
++.+-++.+....+.|++....+.+++|.+.+|+..|.++++.+..
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3445555555666777777777777777777777777777776653
No 330
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.75 E-value=49 Score=33.75 Aligned_cols=153 Identities=14% Similarity=0.040 Sum_probs=85.4
Q ss_pred HHcCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHhccC-----cHHHHHHHHHHcHHhcCCCCChhHHHHHH
Q 048578 307 AIHGCGEEAVKMFWQMQM-------SGIKPDDVTLIAVLTACSHAG-----LIEKGKEIFYNMRRDYKVEPNVKHYGCLV 374 (519)
Q Consensus 307 ~~~g~~~~a~~~~~~m~~-------~g~~p~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 374 (519)
....+++.|+.+|+.+.+ .| .......+..+|.+.. +.+.|..++....+ .|. |+.... +.
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~-~g~-~~a~~~--lg 332 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE-LGN-PDAQYL--LG 332 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh-cCC-chHHHH--HH
Confidence 345566777777766655 44 2224455555555532 56778888877776 343 443333 33
Q ss_pred HHHHh---cCChHHHHHHHHhCCCCCCHHHHHHHHHHHcc-ccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHH--HHh
Q 048578 375 DLLCR---ARLLDEAYEVIRNMPMEPNAVLWGSLLTACAS-ADDGANVELAEIAMERLIKLEPFNDGNYVLMSNI--YAA 448 (519)
Q Consensus 375 ~~~~~---~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~ 448 (519)
..+.. ..+...|.++|......-....+..+...|.. .+-..+.+.|..+++++.+.++. .+...+... +..
T Consensus 333 ~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~--~A~~~~~~~~~~g~ 410 (552)
T KOG1550|consen 333 VLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNP--SAAYLLGAFYEYGV 410 (552)
T ss_pred HHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccCh--hhHHHHHHHHHHcc
Confidence 33322 24567888888877111122222222222111 22256888888888888888833 333333333 333
Q ss_pred cCCchHHHHHHHHHHhCCCcc
Q 048578 449 KAQWDDAGKMRRLMKERNIVK 469 (519)
Q Consensus 449 ~g~~~~A~~~~~~m~~~~~~~ 469 (519)
++++.+.-.+..+.+.|.+-
T Consensus 411 -~~~~~~~~~~~~~a~~g~~~ 430 (552)
T KOG1550|consen 411 -GRYDTALALYLYLAELGYEV 430 (552)
T ss_pred -ccccHHHHHHHHHHHhhhhH
Confidence 78888888887777777654
No 331
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=84.61 E-value=1.5 Score=24.96 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=14.9
Q ss_pred CCChhHHHHHHHHHHhcCChHHHH
Q 048578 364 EPNVKHYGCLVDLLCRARLLDEAY 387 (519)
Q Consensus 364 ~~~~~~~~~l~~~~~~~~~~~~A~ 387 (519)
|-+...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344566666666666666666664
No 332
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=83.03 E-value=3.1 Score=30.27 Aligned_cols=45 Identities=13% Similarity=0.140 Sum_probs=32.4
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 423 IAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 423 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
.-+++.++.+|+|......++..+...|++++|++.+-.+.+...
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 445666677888888888888888888888888888777766554
No 333
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=82.98 E-value=16 Score=26.86 Aligned_cols=60 Identities=20% Similarity=0.196 Sum_probs=43.9
Q ss_pred HHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 048578 172 TFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLV 234 (519)
Q Consensus 172 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 234 (519)
..+...|++++|..+.+....||...|-+|.. .+.|.-++...-+.+|...| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 44677899999999988888888888877655 46677777777777777665 45444443
No 334
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.72 E-value=3.5 Score=24.31 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 048578 196 VTWTAMINGHVKQKNYREGIDLFRKMRD 223 (519)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 223 (519)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566666667777777777776666543
No 335
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.29 E-value=11 Score=27.82 Aligned_cols=46 Identities=11% Similarity=0.074 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 048578 214 GIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKN 259 (519)
Q Consensus 214 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 259 (519)
..+-++.+....+.|++....+.+.+|.+.+++..|.++++.+...
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4445555555566677777777777777777777777777666554
No 336
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.08 E-value=2.8 Score=25.52 Aligned_cols=28 Identities=11% Similarity=0.135 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 440 VLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 440 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
..|+.+|...|+.+.|.++++++...|-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 4688999999999999999999886443
No 337
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=81.90 E-value=19 Score=28.83 Aligned_cols=91 Identities=10% Similarity=0.114 Sum_probs=59.8
Q ss_pred HHHHHhcCCCCch--hHHHHHHHHHhhcCCCChHHHHHHHhcCC---------CCCcchHHHHHHHHHhcCC-hhHHHHH
Q 048578 51 AQIIKASFDNRTI--SDTQLAKLIESLVNSSQIAYAHLVFNQII---------NPSTFAFNTVIRGYAEAGL-GHRGIQL 118 (519)
Q Consensus 51 ~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~~~~A~~~~~~~~---------~~~~~~~~~ll~~~~~~g~-~~~a~~~ 118 (519)
..|.+.+..+++. ..+.++.-.+.. ++....+.+++.+. ..+..+|+.++.+.++..- --.+..+
T Consensus 26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~---~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~L 102 (145)
T PF13762_consen 26 PYMQEENASQSTKTIFINCILNHLASY---QNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTL 102 (145)
T ss_pred HHhhhcccChhHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHH
Confidence 3445455555543 356677766666 67777666666652 2456678888888866555 3456778
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHcCc
Q 048578 119 YTQMIGNGLDPDSFTYPILLKACGDL 144 (519)
Q Consensus 119 ~~~m~~~g~~p~~~~~~~ll~~~~~~ 144 (519)
|+.|++.+.++++.-|..+++++.+-
T Consensus 103 f~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 103 FNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 88888777778888888888776543
No 338
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.89 E-value=16 Score=31.04 Aligned_cols=73 Identities=15% Similarity=0.058 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc---CCCcchhHHHHHHHHHHhcCCHHHHH
Q 048578 212 REGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKN---CIILNDKLGAALTDMYAKCGYIEEAL 285 (519)
Q Consensus 212 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~ 285 (519)
+.|.+.|-.+...+.--++ .....+..|....|.+++..++....+. +-.+|+..+.+|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~-elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETA-ELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4566666666555433333 3333333344456666777666666553 22556667777777777777666653
No 339
>PRK11619 lytic murein transglycosylase; Provisional
Probab=81.30 E-value=73 Score=33.19 Aligned_cols=224 Identities=10% Similarity=-0.065 Sum_probs=115.4
Q ss_pred CChHHHHHHHHHHHHcC-CCcc--hhHHHHHHHHHHhcCCHHHHHHHHhhcCCC--ChhhHHHHHHHHHHcCChHHHHHH
Q 048578 244 GASELGKWVHEFVNKNC-IILN--DKLGAALTDMYAKCGYIEEALRVFKIVLEK--NVCTWNSIIGGLAIHGCGEEAVKM 318 (519)
Q Consensus 244 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~ 318 (519)
.+.+.|..++....... ..+. ..+...+.......+...++...++..... +......-+....+.++++.+...
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHH
Confidence 34566666666553322 1111 112233333333322244555555554322 333333334444466666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhc-----------CCC--------CCh------hHHHHH
Q 048578 319 FWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDY-----------KVE--------PNV------KHYGCL 373 (519)
Q Consensus 319 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----------~~~--------~~~------~~~~~l 373 (519)
+..|.... .-...-...+.+++...|+.++|..+|+.+.... |.+ |.. ..--.-
T Consensus 335 i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~r 413 (644)
T PRK11619 335 LARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMAR 413 (644)
T ss_pred HHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHH
Confidence 66654321 2233445556666555666666666666653311 111 000 001123
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhC-C--CCCchHHHHHHHHHhcC
Q 048578 374 VDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLE-P--FNDGNYVLMSNIYAAKA 450 (519)
Q Consensus 374 ~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~-p--~~~~~~~~l~~~~~~~g 450 (519)
+..+...|....|...+..+....+......+...... .|..+.++.........+ . .-|..|...+..+.+.-
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~---~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~ 490 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFN---QQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGK 490 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHc
Confidence 45566778888888777666223444555555555555 788888887766543321 1 12445777777777776
Q ss_pred CchHHHHHHHHHHhCCCccCC
Q 048578 451 QWDDAGKMRRLMKERNIVKNP 471 (519)
Q Consensus 451 ~~~~A~~~~~~m~~~~~~~~~ 471 (519)
.++.++-.---.+|.++.|..
T Consensus 491 ~v~~~lv~ai~rqES~f~p~a 511 (644)
T PRK11619 491 GIPQSYAMAIARQESAWNPKA 511 (644)
T ss_pred CCCHHHHHHHHHHhcCCCCCC
Confidence 777777544444577777753
No 340
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=81.11 E-value=12 Score=36.02 Aligned_cols=133 Identities=14% Similarity=0.087 Sum_probs=84.3
Q ss_pred HHHHhcCCHHHHHH-HHhhcCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 048578 273 DMYAKCGYIEEALR-VFKIVLE--KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEK 349 (519)
Q Consensus 273 ~~~~~~g~~~~a~~-~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 349 (519)
.--...|++..|-+ ++..+.. .++.........+...|+++.+...+...... +.....+...+++...+.|+++.
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 33344567665544 3333322 24444444445567789999999888776543 34566788899999999999999
Q ss_pred HHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHH
Q 048578 350 GKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PME-PNAVLWGSLLTA 408 (519)
Q Consensus 350 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~-p~~~~~~~ll~~ 408 (519)
|...-.-|..+ .+ -+.+....-.......|-++++.-.+++. .+. |....|..++..
T Consensus 376 a~s~a~~~l~~-ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~ 434 (831)
T PRK15180 376 ALSTAEMMLSN-EI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSS 434 (831)
T ss_pred HHHHHHHHhcc-cc-CChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecc
Confidence 99988888763 33 23333333334445667788888888887 444 344455555554
No 341
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=80.77 E-value=21 Score=26.66 Aligned_cols=86 Identities=10% Similarity=0.149 Sum_probs=45.8
Q ss_pred ChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048578 245 ASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQM 324 (519)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 324 (519)
..++|..|.+.+...+. ....+--+-+..+...|+|++|+..=.....||...|.++-. .+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 45666666666666553 222222333455667777777744434444566666655544 467777777777777765
Q ss_pred CCCCCCHHHH
Q 048578 325 SGIKPDDVTL 334 (519)
Q Consensus 325 ~g~~p~~~~~ 334 (519)
+| .|....|
T Consensus 98 ~g-~~~~q~F 106 (116)
T PF09477_consen 98 SG-SPELQAF 106 (116)
T ss_dssp -S-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 55 4444444
No 342
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.28 E-value=6.3 Score=33.70 Aligned_cols=63 Identities=16% Similarity=0.123 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC
Q 048578 370 YGCLVDLLCRARLLDEAYEVIRNM-PMEPNAV-LWGSLLTACASADDGANVELAEIAMERLIKLEPFN 435 (519)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (519)
.+.-++.+.+.++..+++...++- .-+|... +-..+++.++. .|++++|..-++-+-++.|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcv---aGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCV---AGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhh---cchHHHHHHHHHHHhhcCccc
Confidence 344456667777788887776554 5566443 44556666777 788888888888777777763
No 343
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=80.25 E-value=2.8 Score=23.10 Aligned_cols=27 Identities=26% Similarity=0.123 Sum_probs=18.9
Q ss_pred HHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 405 LLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 405 ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
+..++.. .|+.++|.+.|+++++..|+
T Consensus 6 ~a~~~~~---~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYK---LGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHH---HCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHH---ccCHHHHHHHHHHHHHHCcC
Confidence 3444555 67788888888887777775
No 344
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.61 E-value=9.4 Score=30.53 Aligned_cols=69 Identities=14% Similarity=0.110 Sum_probs=42.9
Q ss_pred HhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHcc
Q 048578 341 CSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAVLWGSLLTACAS 411 (519)
Q Consensus 341 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~ 411 (519)
-...++.+.+..+++.+.--+.-.+...++. .-.+...|+|++|..+|++. .-.+....-..|+..|..
T Consensus 20 aL~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 3457889999999988865222223334443 34567889999999999998 323343333444444444
No 345
>PRK10941 hypothetical protein; Provisional
Probab=79.42 E-value=11 Score=34.03 Aligned_cols=64 Identities=23% Similarity=0.093 Sum_probs=55.1
Q ss_pred HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 401 LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 401 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
..+.+-.+|.+ .++++.|.+..+.++...|+++.-+..-+.+|.+.|.+..|..=++...+.-.
T Consensus 183 ml~nLK~~~~~---~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 183 LLDTLKAALME---EKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHH---cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 34555566888 89999999999999999999999999999999999999999998888866443
No 346
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=79.30 E-value=4.5 Score=22.07 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 048578 416 ANVELAEIAMERLIKLEPFNDGNYVLMSNI 445 (519)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (519)
|+.+.+..+|+++++..|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467889999999999888888888877654
No 347
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.51 E-value=45 Score=29.13 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=10.5
Q ss_pred HhccCcHHHHHHHHHHcHH
Q 048578 341 CSHAGLIEKGKEIFYNMRR 359 (519)
Q Consensus 341 ~~~~g~~~~a~~~~~~~~~ 359 (519)
-...+++.+|+++|+.+..
T Consensus 164 aa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555666666655544
No 348
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=78.18 E-value=56 Score=30.06 Aligned_cols=25 Identities=12% Similarity=0.094 Sum_probs=12.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHc
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNM 357 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~ 357 (519)
.......-||+.||.+.|.+.+.+.
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3444444555555555555555443
No 349
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=78.06 E-value=15 Score=23.55 Aligned_cols=28 Identities=7% Similarity=-0.016 Sum_probs=23.0
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048578 438 NYVLMSNIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
....++.++.+.|++++|.+..+.+.+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3557888999999999999999998773
No 350
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.00 E-value=8.2 Score=34.60 Aligned_cols=59 Identities=15% Similarity=0.070 Sum_probs=50.5
Q ss_pred HHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 402 WGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 402 ~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
+......|.. .|.+.+|.++.++++..+|-+...+..+...+...|+--.|.+-++++.
T Consensus 282 lgkva~~yle---~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLE---AGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHH---cCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3344455777 9999999999999999999999999999999999999888888877774
No 351
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.23 E-value=44 Score=28.30 Aligned_cols=87 Identities=11% Similarity=-0.049 Sum_probs=47.8
Q ss_pred HhccCChHHHHHHHHHHHHcCCCcc--hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhh--HHHHHHHHHHcCChHHH
Q 048578 240 CANLGASELGKWVHEFVNKNCIILN--DKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCT--WNSIIGGLAIHGCGEEA 315 (519)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a 315 (519)
+...++++.|...++.........+ ..+--.|.+.....|.+|+|+..++....++... ...-...+...|+-++|
T Consensus 99 ~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~A 178 (207)
T COG2976 99 EVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEA 178 (207)
T ss_pred HHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHH
Confidence 4555666666665555543221111 1112234555666677777777777666654333 33334566667777777
Q ss_pred HHHHHHHHHCC
Q 048578 316 VKMFWQMQMSG 326 (519)
Q Consensus 316 ~~~~~~m~~~g 326 (519)
..-|++..+.+
T Consensus 179 r~ay~kAl~~~ 189 (207)
T COG2976 179 RAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHcc
Confidence 77777766654
No 352
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=76.92 E-value=4.5 Score=21.45 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=19.2
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 437 GNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
..+..++..+...|++++|...+++..+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3566677777777777777777766654
No 353
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.86 E-value=38 Score=30.94 Aligned_cols=47 Identities=17% Similarity=0.199 Sum_probs=23.7
Q ss_pred cHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 048578 346 LIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM 393 (519)
Q Consensus 346 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 393 (519)
+.++++.++..=.. +|+-||..+++.+++.+.+.+++.+|..+...|
T Consensus 115 ~pq~~i~~l~npIq-YGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQ-YGIFPDQFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred ChHHHHHHHhCcch-hccccchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 33445544444444 455555555555555555555555555544433
No 354
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=76.71 E-value=23 Score=25.38 Aligned_cols=64 Identities=13% Similarity=0.058 Sum_probs=38.8
Q ss_pred HHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHH
Q 048578 251 WVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAV 316 (519)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 316 (519)
+++....+.|+ .+......+..+--..|+.+.|.+++..+. +.+..|..++.++...|.-+-|.
T Consensus 23 ~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 23 DVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 44444555442 222223333222235577888888888888 78888888888888777655543
No 355
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.52 E-value=72 Score=30.41 Aligned_cols=61 Identities=13% Similarity=0.193 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC------CchhHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 048578 164 IHSLTRLITFYCNFGDVKSAQLLFDQMTE------KNVVTWTAMINGHVKQKNYREGIDLFRKMRDS 224 (519)
Q Consensus 164 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (519)
...+.-+.+.|..+|+++.|++.|.+... ..+..|-.+|..-.-.|+|.....+..+..+.
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 34577788999999999999999998654 23446777788888888988888877776654
No 356
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=75.94 E-value=51 Score=28.44 Aligned_cols=161 Identities=11% Similarity=-0.000 Sum_probs=84.2
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh-hHHHHH--HHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHH
Q 048578 262 ILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVC-TWNSII--GGLAIHGCGEEAVKMFWQMQMSG-IKPDDVTLIAV 337 (519)
Q Consensus 262 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~l~--~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~l 337 (519)
|.-+.+||-+.--+...|+++.|.+.|+...+-|+. -|..+= -++--.|++.-|.+-+.+.-..+ -.|=...|..+
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl 175 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYL 175 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHH
Confidence 334667888888888888888888888888765443 222221 12334577777777666665442 12222233322
Q ss_pred HHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHH-HhcCChHHHHHHHHhCCCC------CCHHHHHHHHHHHc
Q 048578 338 LTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLL-CRARLLDEAYEVIRNMPME------PNAVLWGSLLTACA 410 (519)
Q Consensus 338 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~------p~~~~~~~ll~~~~ 410 (519)
. ...-+..+|..-+.+--+ + .+..-|...|-.| .-.=..+.+.+-.....-. .-..||-.+..-+.
T Consensus 176 ~---E~k~dP~~A~tnL~qR~~--~--~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l 248 (297)
T COG4785 176 N---EQKLDPKQAKTNLKQRAE--K--SDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYL 248 (297)
T ss_pred H---HhhCCHHHHHHHHHHHHH--h--ccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHh
Confidence 2 223345555443332222 1 2333444333222 2221222222222222100 01236666777778
Q ss_pred cccCCCCHHHHHHHHHHHHhhC
Q 048578 411 SADDGANVELAEIAMERLIKLE 432 (519)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~ 432 (519)
. .|+.++|..+|+-++..+
T Consensus 249 ~---~G~~~~A~~LfKLaiann 267 (297)
T COG4785 249 S---LGDLDEATALFKLAVANN 267 (297)
T ss_pred c---cccHHHHHHHHHHHHHHh
Confidence 8 889999999998887755
No 357
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.36 E-value=1.1e+02 Score=31.94 Aligned_cols=124 Identities=11% Similarity=0.080 Sum_probs=71.7
Q ss_pred hHHHHHHHHHhhcCCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcC
Q 048578 64 SDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGD 143 (519)
Q Consensus 64 ~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 143 (519)
....++..+.-. |++++|-...-.|...+..-|..-+..+...++......+ +.......++..|..++..+..
T Consensus 394 v~~~yI~HLl~~---~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 394 VGKTYIDHLLFE---GKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHhc---chHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 455566666655 8888888777777777777777777777666655433322 3332223456667777777766
Q ss_pred ccchHHHHHHHHHhCC-----------C-------CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCc
Q 048578 144 LRQVKGVHSLVVKSKD-----------F-------NSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKN 194 (519)
Q Consensus 144 ~~~~~~~~~~~~~~~~-----------~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 194 (519)
.+....++.+.+..+ . ..+......|+..|...++++.|+.++-...+++
T Consensus 468 -~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~ 535 (846)
T KOG2066|consen 468 -SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEKALPIYLKLQDKD 535 (846)
T ss_pred -HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHHHHHHHHhccChH
Confidence 444444444433221 0 1111223346677777777777777776666543
No 358
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=75.32 E-value=60 Score=29.27 Aligned_cols=49 Identities=14% Similarity=0.133 Sum_probs=31.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHhccCcHHHH
Q 048578 302 IIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTL-------IAVLTACSHAGLIEKG 350 (519)
Q Consensus 302 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-------~~l~~~~~~~g~~~~a 350 (519)
+..-..+.+++++|+..+.++...|+..+..+. ..+...|...|+...-
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l 64 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSL 64 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchH
Confidence 445566778888888888888888877665443 3344445555554433
No 359
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=75.32 E-value=63 Score=29.15 Aligned_cols=120 Identities=11% Similarity=-0.049 Sum_probs=55.2
Q ss_pred CChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHH----HHHHHhCCCCCCcchHHHHHHHHcCccc--------
Q 048578 79 SQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQL----YTQMIGNGLDPDSFTYPILLKACGDLRQ-------- 146 (519)
Q Consensus 79 ~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~~~~~-------- 146 (519)
+++++|.+++... ...+.+.|+...|.++ ++-..+.+.++|......++..+...+.
T Consensus 4 kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~f 72 (260)
T PF04190_consen 4 KKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKF 72 (260)
T ss_dssp T-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHH
T ss_pred ccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHH
Confidence 6777777776543 3344455555444333 2333334555555444444443332221
Q ss_pred hHHHHHHHHHhCC-CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCC
Q 048578 147 VKGVHSLVVKSKD-FNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKN 210 (519)
Q Consensus 147 ~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 210 (519)
...+.++- +.++ ..-++.....+...|.+.|++.+|+..|-.-..++...+..++..+...|.
T Consensus 73 i~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~ 136 (260)
T PF04190_consen 73 IKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGY 136 (260)
T ss_dssp HHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcC
Confidence 33333333 2221 122466777777888888888888877655544444444334433333333
No 360
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.21 E-value=9.5 Score=26.64 Aligned_cols=47 Identities=9% Similarity=0.062 Sum_probs=26.2
Q ss_pred ccCcHHHHHHHHHHcHHhcCCCCCh-hHHHHHHHHHHhcCChHHHHHH
Q 048578 343 HAGLIEKGKEIFYNMRRDYKVEPNV-KHYGCLVDLLCRARLLDEAYEV 389 (519)
Q Consensus 343 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~ 389 (519)
..+..++|+..|....++..-+++. .++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666632222221 2445566666666666666554
No 361
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=75.10 E-value=7.4 Score=24.88 Aligned_cols=31 Identities=23% Similarity=0.172 Sum_probs=23.0
Q ss_pred HHHHHccccCCCCHHHHHHHHHHHHhhCCCCCch
Q 048578 405 LLTACASADDGANVELAEIAMERLIKLEPFNDGN 438 (519)
Q Consensus 405 ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (519)
+.-++.+ .|+++.|.+..+.+++.+|+|..+
T Consensus 7 lAig~yk---l~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 7 LAIGHYK---LGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHH---hhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3446777 889999999999999999987443
No 362
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=75.00 E-value=54 Score=30.17 Aligned_cols=53 Identities=15% Similarity=-0.006 Sum_probs=25.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCcHHHHHHHHHHc
Q 048578 303 IGGLAIHGCGEEAVKMFWQMQMSGIKPDDV---TLIAVLTACSHAGLIEKGKEIFYNM 357 (519)
Q Consensus 303 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~ 357 (519)
.-+..+.|+..+|.+.++++.+. .|-.. ....++.+|....-+.....++-+.
T Consensus 282 AMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 282 AMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344556666666666665442 22111 2234555555555555544444444
No 363
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=74.38 E-value=1.2e+02 Score=32.12 Aligned_cols=48 Identities=19% Similarity=0.185 Sum_probs=27.8
Q ss_pred hcCCHHHHHHHHhhcCC--------CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048578 277 KCGYIEEALRVFKIVLE--------KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQM 324 (519)
Q Consensus 277 ~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 324 (519)
..|+++.|.++-+...+ .....+..+..+..-.|++++|..+..+..+
T Consensus 470 ~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 470 NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence 34566666655544422 1344555666666667777777776666544
No 364
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.18 E-value=60 Score=32.42 Aligned_cols=48 Identities=15% Similarity=0.096 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHHhhCCC-CCchHHHHHHHHH-hcCCchHHHHHHHHH
Q 048578 415 GANVELAEIAMERLIKLEPF-NDGNYVLMSNIYA-AKAQWDDAGKMRRLM 462 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m 462 (519)
.|-+..|.++.+.+++++|. ||.....+++.|+ ++.+|+--+++++..
T Consensus 355 RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 355 RGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred cCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 56666666666666666666 6666666666554 555555555555544
No 365
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.74 E-value=43 Score=33.59 Aligned_cols=43 Identities=14% Similarity=0.205 Sum_probs=19.6
Q ss_pred cCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHH
Q 048578 177 FGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKM 221 (519)
Q Consensus 177 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 221 (519)
.|+++.|.++..+. .+..-|..|.++....+++..|.+.|...
T Consensus 650 lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 650 LGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred cCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 34444444433322 23334555555555555555555555443
No 366
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=73.72 E-value=6.4 Score=20.77 Aligned_cols=30 Identities=20% Similarity=0.102 Sum_probs=16.9
Q ss_pred HHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 402 WGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 402 ~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
+..+...+.. .++++.|...+++.++..|.
T Consensus 4 ~~~~a~~~~~---~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLK---LGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHH---HhhHHHHHHHHHHHHccCCC
Confidence 3344444555 56666666666666665543
No 367
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.31 E-value=1.1e+02 Score=31.20 Aligned_cols=275 Identities=9% Similarity=0.000 Sum_probs=143.7
Q ss_pred hHHHHHHHhcCCC-CchhHHHHHHHH-----HHHcCChhHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHhccC--
Q 048578 180 VKSAQLLFDQMTE-KNVVTWTAMING-----HVKQKNYREGIDLFRKMRD-------SGVEVNELTLVSVLSACANLG-- 244 (519)
Q Consensus 180 ~~~A~~~~~~~~~-~~~~~~~~li~~-----~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~ll~~~~~~~-- 244 (519)
...|..+++.... .+...-..+..+ +....+++.|+.+|+.+.. .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 4567777777655 334333333332 4456788999999988866 44 2234455566665543
Q ss_pred ---ChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHh-cCCHHHHHHHHhhcCCC-ChhhHHHHHHHHH----HcCChHHH
Q 048578 245 ---ASELGKWVHEFVNKNCIILNDKLGAALTDMYAK-CGYIEEALRVFKIVLEK-NVCTWNSIIGGLA----IHGCGEEA 315 (519)
Q Consensus 245 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~----~~g~~~~a 315 (519)
+.+.|..++....+.| .|+....-..+..... ..+...|.++|...... ...++-.+...|. ...+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 5677888888888877 3444443333222222 23567888888877654 3333333333322 23467788
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHH---HHh----cCChHHHHH
Q 048578 316 VKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDL---LCR----ARLLDEAYE 388 (519)
Q Consensus 316 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~----~~~~~~A~~ 388 (519)
..++++.-+.| .|....-...+..+.. ++++.+.-.+..+.+ .+..-....-..++.. ... ..+...+..
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFS 460 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH-hhhhHHhhHHHHHHHhccccccccccccchhHHHH
Confidence 88888888877 4443333333334444 666665555555544 2322111110011111 111 123445555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHccc-cCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc---CCchHHHHHHHHHHh
Q 048578 389 VIRNMPMEPNAVLWGSLLTACASA-DDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAK---AQWDDAGKMRRLMKE 464 (519)
Q Consensus 389 ~~~~~~~~p~~~~~~~ll~~~~~~-~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~ 464 (519)
.+......-+......+-..|..- +-..+.+.+...+.++...+ ......++..+..- ..+..|.+++.+..+
T Consensus 461 ~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 461 LYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred HHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 555552223333444444333321 12345777777777766665 55555666655432 125666666666554
No 368
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.95 E-value=1.1e+02 Score=32.86 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 048578 197 TWTAMINGHVKQKNYREGIDLFRKMRDS 224 (519)
Q Consensus 197 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (519)
-|..|+..|...|+.++|+++|.+..+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 4778888888888899999888888663
No 369
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.89 E-value=2.7 Score=38.40 Aligned_cols=117 Identities=13% Similarity=0.093 Sum_probs=62.6
Q ss_pred hccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHccccCCCCHH
Q 048578 342 SHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAV-LWGSLLTACASADDGANVE 419 (519)
Q Consensus 342 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~~~ 419 (519)
...|.++.|++.|....+ --++....|..-..++.+.++...|++=+... .+.||.. .|-.=-.+... .|+++
T Consensus 125 ln~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl---lg~~e 199 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL---LGNWE 199 (377)
T ss_pred hcCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHH---hhchH
Confidence 345667777777766665 23344455555556666666666666655555 5555443 22222222333 56666
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 420 LAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 420 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
+|...+..+.+++-+ ..+-..+-.+.-+.+..++-...+++-++
T Consensus 200 ~aa~dl~~a~kld~d-E~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 200 EAAHDLALACKLDYD-EANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHHHhcccc-HHHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 666666666666643 33333444455555555555555554443
No 370
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=72.80 E-value=25 Score=27.16 Aligned_cols=71 Identities=17% Similarity=0.219 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 048578 314 EAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM 393 (519)
Q Consensus 314 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 393 (519)
+..+-+.....-++.|+......-+++|.+.+|+..|..+|+-++.+.| +....|-.++ ++...+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g--~~k~~Y~y~v---------~elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG--AQKQVYPYYV---------KELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc--cHHHHHHHHH---------HHHHHHHHHh
Confidence 4455566666667889999999999999999999999999998887433 3333455444 3455566666
Q ss_pred CC
Q 048578 394 PM 395 (519)
Q Consensus 394 ~~ 395 (519)
|+
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 54
No 371
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=72.68 E-value=1e+02 Score=30.37 Aligned_cols=100 Identities=8% Similarity=-0.006 Sum_probs=45.5
Q ss_pred HHhhcCCCChhhH-HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cCcHHHHHHHHHHcHHhcCC
Q 048578 287 VFKIVLEKNVCTW-NSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSH--AGLIEKGKEIFYNMRRDYKV 363 (519)
Q Consensus 287 ~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~ 363 (519)
.+..+..++..++ +.++.-+.+.|...+|..++..+.... +|+...|..+++.-.. +-++.-+..+++.+...+|
T Consensus 450 a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg- 527 (568)
T KOG2396|consen 450 ALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG- 527 (568)
T ss_pred HHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC-
Confidence 3334444444332 334555555566666666666655432 4444455555442111 1114445555555555444
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHH
Q 048578 364 EPNVKHYGCLVDLLCRARLLDEAYEV 389 (519)
Q Consensus 364 ~~~~~~~~~l~~~~~~~~~~~~A~~~ 389 (519)
.|+..|...+..-...|..+.+-.+
T Consensus 528 -~d~~lw~~y~~~e~~~g~~en~~~~ 552 (568)
T KOG2396|consen 528 -ADSDLWMDYMKEELPLGRPENCGQI 552 (568)
T ss_pred -CChHHHHHHHHhhccCCCcccccHH
Confidence 3444444444433344444443333
No 372
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=72.56 E-value=9.8 Score=23.21 Aligned_cols=24 Identities=13% Similarity=0.005 Sum_probs=13.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC
Q 048578 302 IIGGLAIHGCGEEAVKMFWQMQMS 325 (519)
Q Consensus 302 l~~~~~~~g~~~~a~~~~~~m~~~ 325 (519)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555555555555555555543
No 373
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=72.42 E-value=4.9 Score=33.27 Aligned_cols=67 Identities=15% Similarity=0.144 Sum_probs=29.9
Q ss_pred CCCCCH-HHHHHHHHHHccccC-CCC-------HHHHHHHHHHHHhhCCCCCchHHHHHHHHHh-cCCchHHHHHHHHHH
Q 048578 394 PMEPNA-VLWGSLLTACASADD-GAN-------VELAEIAMERLIKLEPFNDGNYVLMSNIYAA-KAQWDDAGKMRRLMK 463 (519)
Q Consensus 394 ~~~p~~-~~~~~ll~~~~~~~~-~~~-------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~ 463 (519)
.+.|+. .++..+..++...+. ..+ +++|...|+++...+|. -..|.+ .....+|-++..++.
T Consensus 63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~--------ne~Y~ksLe~~~kap~lh~e~~ 134 (186)
T PF06552_consen 63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPN--------NELYRKSLEMAAKAPELHMEIH 134 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT---------HHHHHHHHHHHTHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCC--------cHHHHHHHHHHHhhHHHHHHHH
Confidence 566654 366666666555221 112 44555555555566665 222221 123345555555655
Q ss_pred hCCCc
Q 048578 464 ERNIV 468 (519)
Q Consensus 464 ~~~~~ 468 (519)
+.+..
T Consensus 135 ~~~~~ 139 (186)
T PF06552_consen 135 KQGLG 139 (186)
T ss_dssp HSSS-
T ss_pred HHHhh
Confidence 55543
No 374
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=71.74 E-value=58 Score=29.35 Aligned_cols=57 Identities=9% Similarity=-0.018 Sum_probs=27.3
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 048578 202 INGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNK 258 (519)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 258 (519)
|.+++..|+|.+++...-+-.+.--+........-|-.|.+.+.+..+.++-....+
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 456666666666655443333221111223333334445566666555555555444
No 375
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=71.66 E-value=67 Score=27.82 Aligned_cols=77 Identities=13% Similarity=-0.010 Sum_probs=53.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHh-cCCCCChhHHHHHHHH
Q 048578 299 WNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRD-YKVEPNVKHYGCLVDL 376 (519)
Q Consensus 299 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~ 376 (519)
.+..++.+.+.+...+++...++-++.. +-|..+-..+++.+|-.|+|++|..-++-.-+- -...+....|..+|++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3455677788888999999888877653 444557778889999999999998887766541 0222344566666654
No 376
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=71.02 E-value=28 Score=30.25 Aligned_cols=49 Identities=14% Similarity=0.094 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhC--CC----CCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 048578 420 LAEIAMERLIKLE--PF----NDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 420 ~a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (519)
.|.+.|+++.+.. |. .......++.+..+.|++++|.+.|.++...+-.
T Consensus 143 ~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 143 KALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 4555555555433 22 2356667888999999999999999999766544
No 377
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=70.50 E-value=9.9 Score=31.53 Aligned_cols=91 Identities=20% Similarity=0.118 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HhccCcHHHHHHHHHHcHHhc----CCCCCh-hHHHHHHHHHHhcC--
Q 048578 312 GEEAVKMFWQMQMSGIKPDDVTLIAVLTA---CSHAGLIEKGKEIFYNMRRDY----KVEPNV-KHYGCLVDLLCRAR-- 381 (519)
Q Consensus 312 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~-- 381 (519)
++.|.+.++.-...+ +.|...++.-..+ +++.....++.+++++...++ .+.|+- .++..+..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 455555555543332 3344433333333 344445556666666554422 344543 55666666665433
Q ss_pred --ChHHHHHHHHhC--------CCCCCHHHHH
Q 048578 382 --LLDEAYEVIRNM--------PMEPNAVLWG 403 (519)
Q Consensus 382 --~~~~A~~~~~~~--------~~~p~~~~~~ 403 (519)
+..+|.++|++. ..+|+...|+
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ 117 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYR 117 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 333444444433 4456665554
No 378
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=70.43 E-value=37 Score=26.56 Aligned_cols=42 Identities=10% Similarity=0.022 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhC--CCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 048578 420 LAEIAMERLIKLE--PFNDGNYVLMSNIYAAKAQWDDAGKMRRL 461 (519)
Q Consensus 420 ~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (519)
.+.++|+.+.+.+ ...+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7778888887654 55677888999999999999999999875
No 379
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=70.41 E-value=1e+02 Score=29.43 Aligned_cols=98 Identities=15% Similarity=0.113 Sum_probs=59.8
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-----------------------------CchhHHHHH---HHHHHHc
Q 048578 161 NSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE-----------------------------KNVVTWTAM---INGHVKQ 208 (519)
Q Consensus 161 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------------------------~~~~~~~~l---i~~~~~~ 208 (519)
+--+.++..+...+...|+.+.|.+++++..- .|...|-++ |..+.+.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~R 116 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRR 116 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhc
Confidence 44566677777778888888777777665430 122333332 4456677
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-ccCChHHHHHHHHHHHH
Q 048578 209 KNYREGIDLFRKMRDSGVEVNELTLVSVLSACA-NLGASELGKWVHEFVNK 258 (519)
Q Consensus 209 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~ 258 (519)
|-+..|+++.+-+......-|+......|+.|+ +.++++-...+.+....
T Consensus 117 G~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 117 GCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred CcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 777777777777776654446666666666654 55566655555555443
No 380
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=70.24 E-value=1.4e+02 Score=30.99 Aligned_cols=165 Identities=9% Similarity=0.002 Sum_probs=93.7
Q ss_pred hhHHHHHHHHH-HcCChHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCC---CCh
Q 048578 297 CTWNSIIGGLA-IHGCGEEAVKMFWQMQMSGIKPDDV-----TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVE---PNV 367 (519)
Q Consensus 297 ~~~~~l~~~~~-~~g~~~~a~~~~~~m~~~g~~p~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~ 367 (519)
.++..+...+. ...+++.|+..+.+....--.++.. .-..++..+.+.+... |...+++..+...-. +-.
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence 44555555554 5678888888888765432222222 2334566666666655 888888776633221 112
Q ss_pred hHHHHH-HHHHHhcCChHHHHHHHHhC------CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHh----h--C--
Q 048578 368 KHYGCL-VDLLCRARLLDEAYEVIRNM------PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIK----L--E-- 432 (519)
Q Consensus 368 ~~~~~l-~~~~~~~~~~~~A~~~~~~~------~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~----~--~-- 432 (519)
..|..+ +..+...++...|.+.++.+ ...|...++..++.+..... .+..+.+.+.++++.. . +
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~-~~~~~d~~~~l~~~~~~~~~~q~~~~ 217 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLR-RGSPDDVLELLQRAIAQARSLQLDPS 217 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc-CCCchhHHHHHHHHHHHHhhcccCCC
Confidence 233333 22333347888899888877 23444556666666644322 4556666666666632 2 1
Q ss_pred --CCCCchHHHHHHHH--HhcCCchHHHHHHHHHH
Q 048578 433 --PFNDGNYVLMSNIY--AAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 433 --p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~ 463 (519)
++.-.+|..+++++ ...|+++.+...+++++
T Consensus 218 ~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 218 VHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12234566666654 46788778888777665
No 381
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=70.22 E-value=11 Score=32.75 Aligned_cols=118 Identities=14% Similarity=0.168 Sum_probs=80.4
Q ss_pred HHhccCcHHHHHHHHHHcHHhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHH-HccccCCC
Q 048578 340 ACSHAGLIEKGKEIFYNMRRDYKVEPNV-KHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAVLWGSLLTA-CASADDGA 416 (519)
Q Consensus 340 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~-~~~~~~~~ 416 (519)
.|.....++.|+..|.+... +.|+. .-|+.-+.++.+..+++.+.+--.+. .+.||.+--..++.. ... ..
T Consensus 19 k~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~---s~ 92 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ---SK 92 (284)
T ss_pred cccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh---hc
Confidence 46677788999997777765 56776 45667788888899998887765555 778888766666655 444 77
Q ss_pred CHHHHHHHHHHHHhhC---CC--CCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 417 NVELAEIAMERLIKLE---PF--NDGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 417 ~~~~a~~~~~~~~~~~---p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
.++.|+..+.++.++. |. -..+...|..+-.+.-...+..++.++..
T Consensus 93 ~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred cccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 8999999999986543 22 24455566555554445555555555543
No 382
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.21 E-value=44 Score=29.41 Aligned_cols=59 Identities=12% Similarity=-0.059 Sum_probs=47.1
Q ss_pred HHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 048578 407 TACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (519)
+.+.. .|++-++++.-..++...|.|..+|..-+.+.+..-+..+|..=|.+..+....
T Consensus 238 QC~L~---~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 238 QCLLK---KEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHhh---HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 44555 778888888888888888888888888888888888888888888887775543
No 383
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=69.90 E-value=10 Score=36.52 Aligned_cols=81 Identities=16% Similarity=0.132 Sum_probs=41.4
Q ss_pred hcCChHHHHHHHHhC-CCCCCHHHHHHHH-HHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHH
Q 048578 379 RARLLDEAYEVIRNM-PMEPNAVLWGSLL-TACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAG 456 (519)
Q Consensus 379 ~~~~~~~A~~~~~~~-~~~p~~~~~~~ll-~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 456 (519)
..+.++.|..++.++ .+.||...|-..- .++.+ .+++..|..-+.++++.+|....+|..-+.++.+.+++.+|.
T Consensus 16 ~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK---~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK---VESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred ccchHHHHHHHHHHHHhcCCcceeeechhhhhhee---echhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence 344455555555444 4455444332222 34445 555555555555555555555555555555555555555555
Q ss_pred HHHHHH
Q 048578 457 KMRRLM 462 (519)
Q Consensus 457 ~~~~~m 462 (519)
..|+..
T Consensus 93 ~~l~~~ 98 (476)
T KOG0376|consen 93 LDLEKV 98 (476)
T ss_pred HHHHHh
Confidence 555443
No 384
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=68.37 E-value=19 Score=30.64 Aligned_cols=37 Identities=22% Similarity=0.175 Sum_probs=19.9
Q ss_pred CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCC
Q 048578 394 PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEP 433 (519)
Q Consensus 394 ~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p 433 (519)
...|+..++..++.++.. .|+.++|.+..+++....|
T Consensus 139 ~~~P~~~~~~~~a~~l~~---~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALAL---LGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCC
Confidence 344555555555555555 5555555555555555555
No 385
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=68.30 E-value=15 Score=25.71 Aligned_cols=46 Identities=11% Similarity=0.013 Sum_probs=31.1
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHH
Q 048578 308 IHGCGEEAVKMFWQMQMSGIKPDD--VTLIAVLTACSHAGLIEKGKEI 353 (519)
Q Consensus 308 ~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~ 353 (519)
...+.++|+..|+...+.-..|.. .++..++++++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888877665333322 2777888888888888777654
No 386
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=67.56 E-value=63 Score=25.94 Aligned_cols=81 Identities=5% Similarity=0.167 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC---------CchhHHHHHHHHHHHcCC-hhHHHHHHHHHHhCCCCCCHHHHHHH
Q 048578 167 LTRLITFYCNFGDVKSAQLLFDQMTE---------KNVVTWTAMINGHVKQKN-YREGIDLFRKMRDSGVEVNELTLVSV 236 (519)
Q Consensus 167 ~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~l 236 (519)
.+.++......+.+.....+++.+.. .+..+|++++.+.....- ---+..+|..|++.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45566666666666666666666532 244567777777755544 33456677777776777777777777
Q ss_pred HHHHhccCChH
Q 048578 237 LSACANLGASE 247 (519)
Q Consensus 237 l~~~~~~~~~~ 247 (519)
+.++.+....+
T Consensus 122 i~~~l~g~~~~ 132 (145)
T PF13762_consen 122 IKAALRGYFHD 132 (145)
T ss_pred HHHHHcCCCCc
Confidence 77776654333
No 387
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=67.45 E-value=1e+02 Score=29.62 Aligned_cols=18 Identities=6% Similarity=-0.141 Sum_probs=8.6
Q ss_pred HcCChHHHHHHHHHHHHC
Q 048578 308 IHGCGEEAVKMFWQMQMS 325 (519)
Q Consensus 308 ~~g~~~~a~~~~~~m~~~ 325 (519)
..+++..|.++++++...
T Consensus 143 n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR 160 (379)
T ss_pred hcCCHHHHHHHHHHHHHh
Confidence 344455555555554443
No 388
>PRK09687 putative lyase; Provisional
Probab=67.38 E-value=1e+02 Score=28.21 Aligned_cols=138 Identities=12% Similarity=-0.055 Sum_probs=66.7
Q ss_pred CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCcchhHHHHH
Q 048578 193 KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLG-ASELGKWVHEFVNKNCIILNDKLGAAL 271 (519)
Q Consensus 193 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l 271 (519)
++...-...+.++.+.++ ..+...+-.+.+. +|...-...+.++.+.+ +...+...+..+.. .++..+....
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A 212 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEA 212 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHH
Confidence 333444444455555554 3344444444432 23333333333443332 12233333333332 3355555556
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 048578 272 TDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACS 342 (519)
Q Consensus 272 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 342 (519)
+.++.+.|+. .|...+-...+.+. .....+.++...|+. +|...+..+.+. .||...-...+.+|.
T Consensus 213 ~~aLg~~~~~-~av~~Li~~L~~~~-~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 213 IIGLALRKDK-RVLSVLIKELKKGT-VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHccCCh-hHHHHHHHHHcCCc-hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 6666666663 33333333333222 234566777777774 677777777753 446666666666554
No 389
>PHA02875 ankyrin repeat protein; Provisional
Probab=66.78 E-value=99 Score=30.12 Aligned_cols=69 Identities=10% Similarity=0.082 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCCCchh--HHHHHHHHHhhcCCCChHHHHHHHhcCCCCCcc--hHHHHHHHHHhcCChhHHHHHH
Q 048578 48 QVHAQIIKASFDNRTIS--DTQLAKLIESLVNSSQIAYAHLVFNQIINPSTF--AFNTVIRGYAEAGLGHRGIQLY 119 (519)
Q Consensus 48 ~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~ 119 (519)
++++.+.+.|..++... ..+.+...+.. |+.+-+.-+++.-..++.. .....+...+..|+.+.+..++
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~---~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKF---RDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHc---CCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHH
Confidence 45566666676655432 22334444455 6666665555544333221 1122344455666665544444
No 390
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=64.83 E-value=37 Score=25.70 Aligned_cols=43 Identities=16% Similarity=0.315 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048578 415 GANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
.-+++..++.+++ ..-|..|+..|...|..++|++++.+..+.
T Consensus 26 ~C~~~~~e~~L~~--------~~~~~eL~~lY~~kg~h~~AL~ll~~l~~~ 68 (108)
T PF10366_consen 26 YCDLEEVEEVLKE--------HGKYQELVDLYQGKGLHRKALELLKKLADE 68 (108)
T ss_pred cCCHHHHHHHHHH--------cCCHHHHHHHHHccCccHHHHHHHHHHhcc
Confidence 5677888777754 568999999999999999999999999774
No 391
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=64.79 E-value=27 Score=29.73 Aligned_cols=51 Identities=14% Similarity=-0.046 Sum_probs=28.2
Q ss_pred ccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 048578 343 HAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM 393 (519)
Q Consensus 343 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 393 (519)
..++.+......+...+.....|++..|..++.++...|+.++|.++.+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444333333333333334566666666666666666666666666665
No 392
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=64.75 E-value=26 Score=32.21 Aligned_cols=91 Identities=18% Similarity=0.100 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC----CCCC--CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 048578 369 HYGCLVDLLCRARLLDEAYEVIRNM----PMEP--NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLM 442 (519)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~----~~~p--~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 442 (519)
.|--=..-|.+..++..|...|.+. --.| +.+.|+.=..+-.. .|++..++.-..++++.+|.+..+|..=
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~---l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY---LGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 3444455677778888888887765 1123 34455554444444 7788888888888889999888888888
Q ss_pred HHHHHhcCCchHHHHHHHHH
Q 048578 443 SNIYAAKAQWDDAGKMRRLM 462 (519)
Q Consensus 443 ~~~~~~~g~~~~A~~~~~~m 462 (519)
+.++....++++|....+..
T Consensus 160 Akc~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEG 179 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhh
Confidence 88888888877777766654
No 393
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=64.63 E-value=1.1e+02 Score=27.78 Aligned_cols=113 Identities=8% Similarity=0.031 Sum_probs=73.8
Q ss_pred HHHHHHHHhhcC-----CCChhhHHHHHHHHHH-cC-ChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 048578 281 IEEALRVFKIVL-----EKNVCTWNSIIGGLAI-HG-CGEEAVKMFWQMQM-SGIKPDDVTLIAVLTACSHAGLIEKGKE 352 (519)
Q Consensus 281 ~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~-~g-~~~~a~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 352 (519)
+.+|+.+|+... -.|......+++.... .+ ....-.++.+-+.. .|..++..+...++..+++.++|.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 445666666321 1255555555555544 11 22223333333332 2457778888888888999999999888
Q ss_pred HHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 048578 353 IFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM 393 (519)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 393 (519)
+++......+...|...|..+|+.....|+..-...+.++-
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 88887763345567788888999988999888888887765
No 394
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=63.16 E-value=1.3e+02 Score=28.11 Aligned_cols=118 Identities=11% Similarity=0.083 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHh---cCChHHHHH
Q 048578 312 GEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCR---ARLLDEAYE 388 (519)
Q Consensus 312 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~ 388 (519)
.+.-+.++++..+.+ +-+......++..+.+..+.+...+.|+++... .+-+...|...++.... .-.+++...
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 355677888877763 345557778888888888888888889998873 33456777777765544 234556655
Q ss_pred HHHhC---------CC------CC--CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhC
Q 048578 389 VIRNM---------PM------EP--NAVLWGSLLTACASADDGANVELAEIAMERLIKLE 432 (519)
Q Consensus 389 ~~~~~---------~~------~p--~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~ 432 (519)
+|.+. +. .+ .......+++.|.-..+.|-.+.|..+++.+++.+
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 55443 11 01 12233444444333334999999999999999987
No 395
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=62.58 E-value=1.2e+02 Score=27.53 Aligned_cols=52 Identities=8% Similarity=-0.197 Sum_probs=24.9
Q ss_pred HHHHHhcCCHHHHHHHHhhc----CCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 048578 272 TDMYAKCGYIEEALRVFKIV----LEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQ 323 (519)
Q Consensus 272 ~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 323 (519)
|.+++..+++.++..+.-.- .+-.+.....-|-.|.+.+.+..+.++-..-.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL 145 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWL 145 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 55555556665555443221 11233344444455555555555555555444
No 396
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=62.23 E-value=17 Score=31.47 Aligned_cols=54 Identities=13% Similarity=0.143 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 048578 415 GANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (519)
.++.+.+.+++.++.++-|.....|..++....+.|+++.|.+.+++..+.+..
T Consensus 8 ~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 8 SGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred cCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 788899999999999999998999999999999999999999999988876654
No 397
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=61.64 E-value=1.2e+02 Score=27.26 Aligned_cols=123 Identities=18% Similarity=0.120 Sum_probs=57.9
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCChH-HHHHHHHHHHH---cC--CCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 048578 222 RDSGVEVNELTLVSVLSACANLGASE-LGKWVHEFVNK---NC--IILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKN 295 (519)
Q Consensus 222 ~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 295 (519)
.+.+.++|......++..+...+.-+ .-..+.+.+.+ .+ ..-++.....+...|.+.|++.+|+..|-.-..++
T Consensus 41 ~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~ 120 (260)
T PF04190_consen 41 EKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPS 120 (260)
T ss_dssp HHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHH
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChh
Confidence 33455555555555555444332211 12223333322 12 22466778888899999999999988775544333
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHH
Q 048578 296 VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRR 359 (519)
Q Consensus 296 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (519)
...+..++......|...++-- ..-..+ --|...++...|...++...+
T Consensus 121 ~~~~~~ll~~~~~~~~~~e~dl--------------fi~RaV-L~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 121 AFAYVMLLEEWSTKGYPSEADL--------------FIARAV-LQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHHHHHHHHHHHHTSS--HHH--------------HHHHHH-HHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcchhH--------------HHHHHH-HHHHHhcCHHHHHHHHHHHHH
Confidence 3333223333333333322211 111122 235566788888887777665
No 398
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=61.54 E-value=2e+02 Score=30.04 Aligned_cols=182 Identities=14% Similarity=0.071 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHcCCCc---chhHHHHHHHHHHhcCCHHHHHHHHhhcCC-C---------Chh-hHHHHHHHHHHcCChH
Q 048578 248 LGKWVHEFVNKNCIIL---NDKLGAALTDMYAKCGYIEEALRVFKIVLE-K---------NVC-TWNSIIGGLAIHGCGE 313 (519)
Q Consensus 248 ~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~---------~~~-~~~~l~~~~~~~g~~~ 313 (519)
+-..++.+|.++-..| .+.+...++-.|....+++..+++.+.+.. | ++. .|.-.++---+-|+-+
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRa 260 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRA 260 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHH
Confidence 3344556666543233 344555666677777777777777766643 2 111 2222222223457778
Q ss_pred HHHHHHHHHHHC--CCCCCHHH-----HHH--HHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCC-h
Q 048578 314 EAVKMFWQMQMS--GIKPDDVT-----LIA--VLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARL-L 383 (519)
Q Consensus 314 ~a~~~~~~m~~~--g~~p~~~~-----~~~--l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 383 (519)
+|+.+.-.+.+. .+.||... |.- +-..|...+..+.|.+.|++.-+ +.|+..+=-.+...+...|. +
T Consensus 261 kAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe---veP~~~sGIN~atLL~aaG~~F 337 (1226)
T KOG4279|consen 261 KALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE---VEPLEYSGINLATLLRAAGEHF 337 (1226)
T ss_pred HHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc---cCchhhccccHHHHHHHhhhhc
Confidence 888877777554 25566532 221 12235556677888888887754 56654432233333333332 2
Q ss_pred HHHHHHH------HhC-CCCCC---HHHHH---HHHHHHccccCCCCHHHHHHHHHHHHhhCCCC
Q 048578 384 DEAYEVI------RNM-PMEPN---AVLWG---SLLTACASADDGANVELAEIAMERLIKLEPFN 435 (519)
Q Consensus 384 ~~A~~~~------~~~-~~~p~---~~~~~---~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (519)
+...++- ..+ |.+-. ...|. ..+.+-.- .+++.+|.+..++|.++.|+.
T Consensus 338 ens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVL---And~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 338 ENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVL---ANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred cchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhh---ccCHHHHHHHHHHHhccCCce
Confidence 2222211 111 21111 11121 12233333 678999999999999998773
No 399
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=60.24 E-value=2.2e+02 Score=29.63 Aligned_cols=50 Identities=16% Similarity=-0.061 Sum_probs=32.3
Q ss_pred hccCcHHHHHHHHHHcHHhcCCCCC-------hhHHHHHHHHHHhcCChHHHHHHHH
Q 048578 342 SHAGLIEKGKEIFYNMRRDYKVEPN-------VKHYGCLVDLLCRARLLDEAYEVIR 391 (519)
Q Consensus 342 ~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~ 391 (519)
+-.+++..|...++.+.....-.|+ +..+...+-.+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3458898999999888763322222 2223333334456799999999997
No 400
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=59.97 E-value=1.2e+02 Score=29.42 Aligned_cols=39 Identities=21% Similarity=0.245 Sum_probs=27.7
Q ss_pred CCCCCHH--HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC
Q 048578 394 PMEPNAV--LWGSLLTACASADDGANVELAEIAMERLIKLEPFN 435 (519)
Q Consensus 394 ~~~p~~~--~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (519)
.++|... ++...+..+.+ .+|+..|..+.+++++++|..
T Consensus 293 ~LQp~H~~LaLr~AM~~~~K---~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 293 KLQPSHLILALRSAMSQAFK---LKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp ---HHHHHHHHHHHHHHCCC---TTBHHHHHHHHHHHHCT--SC
T ss_pred CCcHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHcCCCH
Confidence 6666433 66777777888 999999999999999999863
No 401
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=59.15 E-value=1.3e+02 Score=26.61 Aligned_cols=99 Identities=17% Similarity=0.089 Sum_probs=67.8
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChh-HHHHHHHHHHhcCCh
Q 048578 306 LAIHGCGEEAVKMFWQMQMSGIKPDDV-TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVK-HYGCLVDLLCRARLL 383 (519)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~ 383 (519)
|....+++.|+.-|.+.+. +.|+.. .|..=+-++.+..+++.+..=-.+..+ +.|+.. .-..+...+.....+
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq---l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ---LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh---cChHHHHHHHHHHHHHHhhccc
Confidence 3445678888888877766 577774 556667778888888888776666654 456643 333456667788889
Q ss_pred HHHHHHHHhC-------CCCCCHHHHHHHHHHH
Q 048578 384 DEAYEVIRNM-------PMEPNAVLWGSLLTAC 409 (519)
Q Consensus 384 ~~A~~~~~~~-------~~~p~~~~~~~ll~~~ 409 (519)
++|+..+.+. ++.|-......|..+-
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak 127 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK 127 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 9999998876 3444455666666553
No 402
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=58.72 E-value=35 Score=24.93 Aligned_cols=50 Identities=8% Similarity=0.021 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHhhCCC----C-----CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 415 GANVELAEIAMERLIKLEPF----N-----DGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
.|++..|.+.+.+....... . ..+...++......|++++|...+++..+
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 67888887777777654322 1 23445677788899999999999988764
No 403
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=58.19 E-value=2.9e+02 Score=30.41 Aligned_cols=160 Identities=11% Similarity=0.008 Sum_probs=86.8
Q ss_pred HHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH-HHHHHHHHHHcCCCcc
Q 048578 186 LFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASEL-GKWVHEFVNKNCIILN 264 (519)
Q Consensus 186 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~~~~~ 264 (519)
+...+..+|...-...+.++.+.+..+. +.... -.++...-.....++...+..+. +...+..+.+ .++
T Consensus 719 l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d 788 (897)
T PRK13800 719 FAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPD 788 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCC
Confidence 3444455666555555666665544322 11222 13455555555555555554332 2233333333 345
Q ss_pred hhHHHHHHHHHHhcCCHHHHHH-HHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 048578 265 DKLGAALTDMYAKCGYIEEALR-VFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSH 343 (519)
Q Consensus 265 ~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 343 (519)
..+-...+.++...|..+.+.. +...+..++...-...+.++...+. +++...+..+.+ .|+...-...+.++.+
T Consensus 789 ~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~ 864 (897)
T PRK13800 789 PLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTR 864 (897)
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhc
Confidence 6677777777777776554433 3344445565555666667766664 445566656554 5666666666777766
Q ss_pred cCcHHHHHHHHHHcHH
Q 048578 344 AGLIEKGKEIFYNMRR 359 (519)
Q Consensus 344 ~g~~~~a~~~~~~~~~ 359 (519)
.+....+...+..+.+
T Consensus 865 ~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 865 WPGDPAARDALTTALT 880 (897)
T ss_pred cCCCHHHHHHHHHHHh
Confidence 5434456666666655
No 404
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=57.65 E-value=19 Score=32.59 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 048578 415 GANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRL 461 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (519)
.|+.++|..+|+.++.+.|.++.....++......++.-+|-.++-+
T Consensus 129 ~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ 175 (472)
T KOG3824|consen 129 DGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVK 175 (472)
T ss_pred ccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhe
Confidence 56667777777777777776666666666666666666666665533
No 405
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=57.49 E-value=83 Score=24.50 Aligned_cols=45 Identities=11% Similarity=0.135 Sum_probs=30.8
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 048578 215 IDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKN 259 (519)
Q Consensus 215 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 259 (519)
.+-++.+....+.|++...-..+++|.+.+|+..|..+++.+...
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 344555555667777777777777777777777777777766553
No 406
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=57.30 E-value=45 Score=20.75 Aligned_cols=34 Identities=12% Similarity=0.238 Sum_probs=23.0
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048578 205 HVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLS 238 (519)
Q Consensus 205 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 238 (519)
..+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456666777777777777777777766666554
No 407
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=56.88 E-value=1.3e+02 Score=27.65 Aligned_cols=19 Identities=11% Similarity=-0.130 Sum_probs=9.7
Q ss_pred CCCcchHHHHHH-HHcCccc
Q 048578 128 DPDSFTYPILLK-ACGDLRQ 146 (519)
Q Consensus 128 ~p~~~~~~~ll~-~~~~~~~ 146 (519)
.|....++.+++ .+.+.|-
T Consensus 162 t~~~tvl~~L~~d~LVkeGi 181 (412)
T KOG2297|consen 162 TLPATVLQSLLNDNLVKEGI 181 (412)
T ss_pred CCCHHHHHHHHHhhHHHHhH
Confidence 455555666555 3444444
No 408
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=56.61 E-value=1.6e+02 Score=26.90 Aligned_cols=57 Identities=14% Similarity=0.082 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 048578 199 TAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFV 256 (519)
Q Consensus 199 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 256 (519)
+.....|...|.+.+|.++-+...... +.+...+..++..+...||--.+.+-++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344455666677777766666665543 345555666666666666654444444443
No 409
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=56.26 E-value=24 Score=32.03 Aligned_cols=43 Identities=16% Similarity=0.297 Sum_probs=33.2
Q ss_pred CchhH-HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 048578 193 KNVVT-WTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVS 235 (519)
Q Consensus 193 ~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 235 (519)
++..+ |+..|....+.||+++|++++++.++.|+.--..+|..
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 44443 67889999999999999999999999887655555543
No 410
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=56.22 E-value=47 Score=20.66 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=25.2
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048578 306 LAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLT 339 (519)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 339 (519)
..+.|-.+++..++++|.+.|+..+...+..+++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3466777788888888888888777777776654
No 411
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=55.79 E-value=21 Score=23.74 Aligned_cols=26 Identities=15% Similarity=0.372 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHH
Q 048578 197 TWTAMINGHVKQKNYREGIDLFRKMR 222 (519)
Q Consensus 197 ~~~~li~~~~~~~~~~~a~~~~~~m~ 222 (519)
-.-.+|.+|.+.|++++|.++++++.
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33445666666666666666665554
No 412
>PRK12798 chemotaxis protein; Reviewed
Probab=55.51 E-value=2e+02 Score=27.77 Aligned_cols=150 Identities=22% Similarity=0.265 Sum_probs=78.4
Q ss_pred cCCHHHHHHHHhhcCCC----ChhhHHHHHHHH-HHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHH
Q 048578 278 CGYIEEALRVFKIVLEK----NVCTWNSIIGGL-AIHGCGEEAVKMFWQMQMSGIKPDD----VTLIAVLTACSHAGLIE 348 (519)
Q Consensus 278 ~g~~~~a~~~~~~~~~~----~~~~~~~l~~~~-~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~ 348 (519)
.|+.+++.+.+..+... ....+-.|+.+- ....+...|+++|+...-. -|.. ....--+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 46666666666665332 233444554433 3345677777777766532 3322 23444444566777777
Q ss_pred HHHHHHHHcHHhcCCCCChhHHH-HHHHHHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHH
Q 048578 349 KGKEIFYNMRRDYKVEPNVKHYG-CLVDLLCRAR---LLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIA 424 (519)
Q Consensus 349 ~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~ 424 (519)
++..+-......+...|-..-|. .+..++.+.+ ..+.-..++..|.-.--...|..+.+.-.. .|+.+.|...
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali---~Gk~~lA~~A 279 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALI---DGKTELARFA 279 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHH---cCcHHHHHHH
Confidence 76666665555444444332222 2222222222 233344444554211123466666666666 7777777777
Q ss_pred HHHHHhhC
Q 048578 425 MERLIKLE 432 (519)
Q Consensus 425 ~~~~~~~~ 432 (519)
-+++..+.
T Consensus 280 s~~A~~L~ 287 (421)
T PRK12798 280 SERALKLA 287 (421)
T ss_pred HHHHHHhc
Confidence 77777665
No 413
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=54.72 E-value=57 Score=26.09 Aligned_cols=62 Identities=15% Similarity=0.079 Sum_probs=42.4
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 048578 384 DEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQ 451 (519)
Q Consensus 384 ~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (519)
+.|.++.+-|| .............. .|++..|.++.+.++..+|+|..+....+.+|.+.|.
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~---~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALA---AGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHH---CT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 45666666663 12222333344555 8999999999999999999999998888888877653
No 414
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=54.45 E-value=20 Score=32.58 Aligned_cols=45 Identities=18% Similarity=0.160 Sum_probs=35.9
Q ss_pred CCcc-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHH
Q 048578 94 PSTF-AFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILL 138 (519)
Q Consensus 94 ~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 138 (519)
++.. -|+..|....+.||+++|+.++++..+.|+.--..+|-..+
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 4444 37799999999999999999999999999876665654433
No 415
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=54.30 E-value=38 Score=33.83 Aligned_cols=97 Identities=16% Similarity=0.039 Sum_probs=51.1
Q ss_pred CcHHHHHHHHHHcHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHccccCCCCHHH
Q 048578 345 GLIEKGKEIFYNMRRDYKVEPN--VKHYGCLVDLLCRARLLDEAYEVIRNM-PME-PNAVLWGSLLTACASADDGANVEL 420 (519)
Q Consensus 345 g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~~~~ 420 (519)
|+...|.+.+..... ..|. -...-.|...+.+.|...+|-.++.+. .+. ....++..+.+++.. ..+++.
T Consensus 621 gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~---l~~i~~ 694 (886)
T KOG4507|consen 621 GNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLA---LKNISG 694 (886)
T ss_pred CCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHH---HhhhHH
Confidence 555556555554433 1221 112223444555555555665555443 222 233455555566666 666777
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHH
Q 048578 421 AEIAMERLIKLEPFNDGNYVLMSNIYA 447 (519)
Q Consensus 421 a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (519)
|++.|+.+.+.+|+++..-+.|..+-+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 777777777777766666555554433
No 416
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=54.09 E-value=91 Score=26.17 Aligned_cols=20 Identities=20% Similarity=0.459 Sum_probs=14.9
Q ss_pred HHhccCcHHHHHHHHHHcHH
Q 048578 340 ACSHAGLIEKGKEIFYNMRR 359 (519)
Q Consensus 340 ~~~~~g~~~~a~~~~~~~~~ 359 (519)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 57777777777777777765
No 417
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=53.74 E-value=69 Score=23.33 Aligned_cols=18 Identities=33% Similarity=0.235 Sum_probs=11.7
Q ss_pred CCCHHHHHHHHHHHHhhC
Q 048578 415 GANVELAEIAMERLIKLE 432 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~ 432 (519)
.|+.++|...+++++++.
T Consensus 54 ~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 54 FGHYEEALQALEEAIRLA 71 (94)
T ss_pred hCCHHHHHHHHHHHHHHH
Confidence 666777777766666543
No 418
>PF13934 ELYS: Nuclear pore complex assembly
Probab=53.60 E-value=1.6e+02 Score=25.94 Aligned_cols=118 Identities=9% Similarity=0.005 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHhhcCCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 048578 62 TISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKAC 141 (519)
Q Consensus 62 ~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 141 (519)
+..+..++.++... ..+++++|...+....-+ ..--..++.++..+|+.+.|+.++..+.-
T Consensus 76 p~~~~~~~~g~W~L-D~~~~~~A~~~L~~ps~~-~~~~~~Il~~L~~~~~~~lAL~y~~~~~p----------------- 136 (226)
T PF13934_consen 76 PPKYIKFIQGFWLL-DHGDFEEALELLSHPSLI-PWFPDKILQALLRRGDPKLALRYLRAVGP----------------- 136 (226)
T ss_pred CHHHHHHHHHHHHh-ChHhHHHHHHHhCCCCCC-cccHHHHHHHHHHCCChhHHHHHHHhcCC-----------------
Q ss_pred cCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCc-hhHHHHHHHHHH----HcCChhHHHH
Q 048578 142 GDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKN-VVTWTAMINGHV----KQKNYREGID 216 (519)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~----~~~~~~~a~~ 216 (519)
...+......++.. ..++.+.+|..+-+....+. ...+..++..+. +.+..++-..
T Consensus 137 ------------------~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~ 197 (226)
T PF13934_consen 137 ------------------PLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEECARSGRLDELLS 197 (226)
T ss_pred ------------------CCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHhhhhhHHHHHHh
Q ss_pred H
Q 048578 217 L 217 (519)
Q Consensus 217 ~ 217 (519)
+
T Consensus 198 L 198 (226)
T PF13934_consen 198 L 198 (226)
T ss_pred C
No 419
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=52.57 E-value=90 Score=24.36 Aligned_cols=40 Identities=10% Similarity=0.037 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhC--CCCCchHHHHHHHHHhcCCchHHHHHHH
Q 048578 421 AEIAMERLIKLE--PFNDGNYVLMSNIYAAKAQWDDAGKMRR 460 (519)
Q Consensus 421 a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 460 (519)
..++|..+.+.+ ..-+..|...+..+...|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455666666544 4456778888888888999999988875
No 420
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.45 E-value=53 Score=24.19 Aligned_cols=54 Identities=13% Similarity=0.136 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhhC-CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcc
Q 048578 418 VELAEIAMERLIKLE-PFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGC 473 (519)
Q Consensus 418 ~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 473 (519)
.+..++.++++...+ +..|.....|+..|.+.|+-|.|.+-|+.=+ ..-|+++.
T Consensus 53 ~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEK--alFPES~~ 107 (121)
T COG4259 53 TAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEK--ALFPESGV 107 (121)
T ss_pred HHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhh--hhCccchh
Confidence 344455556555444 5567888888888888888888888777633 34444443
No 421
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=52.11 E-value=87 Score=22.54 Aligned_cols=66 Identities=9% Similarity=0.109 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHH
Q 048578 46 FKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGI 116 (519)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 116 (519)
...+++.+.+.|+- +..-.=..-+.....|+.+.|.+++..++ ..+..|..++.++-..|.-.-|.
T Consensus 21 ~~~v~d~ll~~~il----T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL----TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC----CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 36788888888754 22222222231123389999999999998 88899999999999888766554
No 422
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.42 E-value=16 Score=33.72 Aligned_cols=82 Identities=11% Similarity=-0.061 Sum_probs=49.1
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCCh-hHHHHHHHHHHhcCChHHH
Q 048578 308 IHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNV-KHYGCLVDLLCRARLLDEA 386 (519)
Q Consensus 308 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A 386 (519)
..|.++.|++.|...+... +|....|..-.+++.+.+.+..|++=+....+ +.||. .-|-.-..+..-.|+|++|
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e---in~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE---INPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc---cCcccccccchhhHHHHHhhchHHH
Confidence 4566777777777766643 44455666666667777777777766666554 33432 2333334444556777777
Q ss_pred HHHHHhC
Q 048578 387 YEVIRNM 393 (519)
Q Consensus 387 ~~~~~~~ 393 (519)
...|...
T Consensus 202 a~dl~~a 208 (377)
T KOG1308|consen 202 AHDLALA 208 (377)
T ss_pred HHHHHHH
Confidence 7666655
No 423
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=51.21 E-value=26 Score=23.30 Aligned_cols=45 Identities=11% Similarity=0.037 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 418 VELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
++...++++.+....- |-.....++.+|...|++++|.++++++.
T Consensus 6 ~~~~~~~~~~lR~~RH-D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 6 LEELEELIDSLRAQRH-DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444444444433222 23445567778888888888888877764
No 424
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=50.92 E-value=26 Score=31.87 Aligned_cols=81 Identities=12% Similarity=0.151 Sum_probs=55.7
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHH-HHHHHccccCCCCHHHHHHHHHHHHhhCCCCCch
Q 048578 362 KVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAV-LWGS-LLTACASADDGANVELAEIAMERLIKLEPFNDGN 438 (519)
Q Consensus 362 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~-~~~~-ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (519)
...-|+..|...+.-..+.|.+.+.-.++.+. ...|+.+ .|.. --.-+.. .++++.+..+|.+.++.+|++|..
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~---~ani~s~Ra~f~~glR~N~~~p~i 178 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFE---IANIESSRAMFLKGLRMNSRSPRI 178 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhh---hccHHHHHHHHHhhhccCCCCchH
Confidence 34556777777776666677777777777776 4455333 3322 1112444 789999999999999999999999
Q ss_pred HHHHHHH
Q 048578 439 YVLMSNI 445 (519)
Q Consensus 439 ~~~l~~~ 445 (519)
|......
T Consensus 179 w~eyfr~ 185 (435)
T COG5191 179 WIEYFRM 185 (435)
T ss_pred HHHHHHH
Confidence 8865443
No 425
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=50.88 E-value=61 Score=32.49 Aligned_cols=135 Identities=14% Similarity=0.032 Sum_probs=87.7
Q ss_pred CCCHHHHHHHHHHHhcc--CcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHH-HhcCChHHHHHHHHhC-CCCCC--HHH
Q 048578 328 KPDDVTLIAVLTACSHA--GLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLL-CRARLLDEAYEVIRNM-PMEPN--AVL 401 (519)
Q Consensus 328 ~p~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~-~~~p~--~~~ 401 (519)
.|+..+...++.-...- ...+-|..++-.|.. .+.|--.+.|. ...| ...|+...|...+... ...|- .+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln~-aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILNE-AGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEeec-ccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 46666665554433322 223334444444433 33332222222 2333 3468888998887776 44552 234
Q ss_pred HHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 048578 402 WGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 402 ~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (519)
...|.+.... .|-...|-.++.+.+.+....|-++..++++|....+.+.|++.|++..+....
T Consensus 645 ~v~la~~~~~---~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~ 708 (886)
T KOG4507|consen 645 LVNLANLLIH---YGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK 708 (886)
T ss_pred HHHHHHHHHH---hhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC
Confidence 5556666666 667778889999988888777889999999999999999999999998776543
No 426
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=50.20 E-value=1.2e+02 Score=23.66 Aligned_cols=60 Identities=12% Similarity=0.083 Sum_probs=32.0
Q ss_pred CcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 048578 130 DSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQ 189 (519)
Q Consensus 130 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 189 (519)
|..-....+.-.....++.+++..|...+-....+..|......+...|++++|.++|+.
T Consensus 65 D~RylkiWi~ya~~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 65 DERYLKIWIKYADLSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp -HHHHHHHHHHHTTBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 333333333333333346666666666552233455666666777777777777777653
No 427
>PRK10941 hypothetical protein; Provisional
Probab=50.06 E-value=2e+02 Score=26.11 Aligned_cols=75 Identities=8% Similarity=-0.021 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHH
Q 048578 299 WNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDV-TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVD 375 (519)
Q Consensus 299 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 375 (519)
.+.+-.+|.+.++++.|+.+.+.+..- .|+.. -+.--.-.|.+.|.+..|..=++...+.+.-.|+.......+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 344445566666666666666666552 33332 3444444566666666666666665554333444444333333
No 428
>PRK13342 recombination factor protein RarA; Reviewed
Probab=48.44 E-value=2.7e+02 Score=27.19 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=29.1
Q ss_pred HHHHHHHHHHH---cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 048578 197 TWTAMINGHVK---QKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANL 243 (519)
Q Consensus 197 ~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 243 (519)
.+..++.++.+ ..+++.|+..+..|.+.|..|....-..+..++..-
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 34445555544 477888888888888888776655444444444333
No 429
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.23 E-value=2.4e+02 Score=30.14 Aligned_cols=132 Identities=17% Similarity=0.097 Sum_probs=91.2
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 048578 274 MYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEI 353 (519)
Q Consensus 274 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 353 (519)
....+|+++.|++.-.++- +..+|..|.....+.|+.+-|+..|++.+. |..|--.|.-.|+.++-.++
T Consensus 652 LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHH
Confidence 3567889988888766553 566899999999999999999999988663 34444457778888887776
Q ss_pred HHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhC
Q 048578 354 FYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLE 432 (519)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~ 432 (519)
-.....+ -|..+ ....-.-.|++++=.++++..|..|-.. + .... +|.-++|.++.++..+..
T Consensus 721 ~~iae~r----~D~~~---~~qnalYl~dv~ervkIl~n~g~~~lay-----l-ta~~---~G~~~~ae~l~ee~~~~~ 783 (1202)
T KOG0292|consen 721 MKIAEIR----NDATG---QFQNALYLGDVKERVKILENGGQLPLAY-----L-TAAA---HGLEDQAEKLGEELEKQV 783 (1202)
T ss_pred HHHHHhh----hhhHH---HHHHHHHhccHHHHHHHHHhcCcccHHH-----H-HHhh---cCcHHHHHHHHHhhcccc
Confidence 6655442 23221 2222334789999999999986544221 1 1223 788899999998887633
No 430
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=47.50 E-value=42 Score=32.12 Aligned_cols=62 Identities=19% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 048578 401 LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLM 462 (519)
Q Consensus 401 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (519)
+...++..+...++.+.+-+|.-+++...+..|.|...-..++.+|...|-...|.+.|+.+
T Consensus 182 a~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 182 AAHSLLDLYSKTKDSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
No 431
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=47.33 E-value=2.6e+02 Score=26.71 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=30.6
Q ss_pred HHHhccCcHHHHHHHHHHcHHhcCCCCCh-----hHHHHHHHHHHhcCChHHHHHHHHhC
Q 048578 339 TACSHAGLIEKGKEIFYNMRRDYKVEPNV-----KHYGCLVDLLCRARLLDEAYEVIRNM 393 (519)
Q Consensus 339 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~ 393 (519)
+.|...+|+-.|.-+-+++..++=-.|+. ..|+.+++.....+.+-.+.+.|+..
T Consensus 179 rKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yrai 238 (439)
T KOG1498|consen 179 RLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAI 238 (439)
T ss_pred HHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 34555666666665555555433333442 34556666665666666666666555
No 432
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=46.84 E-value=1.1e+02 Score=29.46 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=13.1
Q ss_pred HHHHHHHhcCChHHHHHHHHhC
Q 048578 372 CLVDLLCRARLLDEAYEVIRNM 393 (519)
Q Consensus 372 ~l~~~~~~~~~~~~A~~~~~~~ 393 (519)
.|++.++-.||+..|+++++.+
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~i 148 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENI 148 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhcc
Confidence 3455555666666666666655
No 433
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=46.82 E-value=84 Score=28.06 Aligned_cols=57 Identities=16% Similarity=0.141 Sum_probs=35.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 048578 200 AMINGHVKQKNYREGIDLFRKMRD----SG-VEVNELTLVSVLSACANLGASELGKWVHEFV 256 (519)
Q Consensus 200 ~li~~~~~~~~~~~a~~~~~~m~~----~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 256 (519)
.+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+.-++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455667777777777777777632 12 2344455666666677777777766654443
No 434
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=46.52 E-value=4.4e+02 Score=29.06 Aligned_cols=258 Identities=9% Similarity=-0.101 Sum_probs=141.6
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC
Q 048578 182 SAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCI 261 (519)
Q Consensus 182 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 261 (519)
....+...+..+|+..-...+..+.+.+..+ +...+....+ .++...-...+.++.+.+........+..+++.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~-- 695 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS-- 695 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC--
Confidence 3345556666788887777788887777644 4455555543 234444444444544433211112233333332
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048578 262 ILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTAC 341 (519)
Q Consensus 262 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 341 (519)
++..+-...+.++...+.- ....+...+..+|...-...+.++.+.+..+. +..... .++...-...+.++
T Consensus 696 -~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL 766 (897)
T PRK13800 696 -PDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGL 766 (897)
T ss_pred -CCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHH
Confidence 4556666666666554321 12344455566777766667777776655432 222222 45666666667777
Q ss_pred hccCcHHH-HHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHH
Q 048578 342 SHAGLIEK-GKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVEL 420 (519)
Q Consensus 342 ~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~ 420 (519)
...+..+. +...+..+.. .++...-...+.++...|..+.+...+..+-..++..+=...+.++.. .+. ++
T Consensus 767 ~~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~---l~~-~~ 838 (897)
T PRK13800 767 ATLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAG---AAA-DV 838 (897)
T ss_pred HHhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHh---ccc-cc
Confidence 76665443 3444555544 356667777888888888766554444444224555555556666666 554 34
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 421 AEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 421 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
+...+..+++ +| +.......+.++.+.+.-..+...+....+
T Consensus 839 a~~~L~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 839 AVPALVEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred hHHHHHHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 5555555443 23 356666777777765333456666655544
No 435
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=46.45 E-value=28 Score=27.33 Aligned_cols=32 Identities=25% Similarity=0.470 Sum_probs=24.4
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 048578 108 EAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKAC 141 (519)
Q Consensus 108 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 141 (519)
..|.-..|..+|.+|++.|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 445666799999999999988874 66666654
No 436
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=45.68 E-value=6.5e+02 Score=30.74 Aligned_cols=148 Identities=11% Similarity=0.085 Sum_probs=84.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCC--CCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCC
Q 048578 102 VIRGYAEAGLGHRGIQLYTQMIGNGLD--PDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGD 179 (519)
Q Consensus 102 ll~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 179 (519)
+..+=.+.+.+.+|+-.++.-.....+ ....-|-.+...|+..++.+.+.......- ..|+ ...-|-.....|+
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-ADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-cCcc---HHHHHHHHHhhcc
Confidence 334455677888888888874211111 112233444447777777555544443211 1222 2223444667899
Q ss_pred hHHHHHHHhcCCC--Cc-hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHH-HHHHhccCChHHHHHHHH
Q 048578 180 VKSAQLLFDQMTE--KN-VVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSV-LSACANLGASELGKWVHE 254 (519)
Q Consensus 180 ~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~ 254 (519)
+..|...|+.+.+ |+ ..+++-++......|.++.++-..+-.... ..+....++.+ ..+-=+.+++|.......
T Consensus 1465 ~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 9999999999987 33 557888888777888888887766655443 22333333322 233345666666665544
No 437
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=44.98 E-value=1.3e+02 Score=29.12 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=10.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhhc
Q 048578 270 ALTDMYAKCGYIEEALRVFKIV 291 (519)
Q Consensus 270 ~l~~~~~~~g~~~~a~~~~~~~ 291 (519)
.|++.++-.|++..|+++++.+
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~i 148 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENI 148 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhcc
Confidence 3444445555555555555443
No 438
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=44.36 E-value=2.7e+02 Score=25.95 Aligned_cols=26 Identities=23% Similarity=0.508 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCC
Q 048578 166 SLTRLITFYCNFGDVKSAQLLFDQMT 191 (519)
Q Consensus 166 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 191 (519)
..-.....||+-||-+.|++.+....
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~ 131 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTY 131 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34444555666666666666665543
No 439
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.15 E-value=34 Score=35.93 Aligned_cols=73 Identities=14% Similarity=-0.013 Sum_probs=48.3
Q ss_pred HhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHH
Q 048578 341 CSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVEL 420 (519)
Q Consensus 341 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~ 420 (519)
+...|+++.|++.-.++ .+..+|..|+....+.|+.+-|.-.|++.. .|..|--.|.- .|+.++
T Consensus 653 aLe~gnle~ale~akkl-------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~k------nfekLsfLYli---Tgn~eK 716 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKL-------DDKDVWERLGEEALRQGNHQIAEMCYQRTK------NFEKLSFLYLI---TGNLEK 716 (1202)
T ss_pred ehhcCCHHHHHHHHHhc-------CcHHHHHHHHHHHHHhcchHHHHHHHHHhh------hhhheeEEEEE---eCCHHH
Confidence 44567777777654444 345688888888888888888877777652 23444445666 777777
Q ss_pred HHHHHHHHH
Q 048578 421 AEIAMERLI 429 (519)
Q Consensus 421 a~~~~~~~~ 429 (519)
..++.+.+.
T Consensus 717 L~Km~~iae 725 (1202)
T KOG0292|consen 717 LSKMMKIAE 725 (1202)
T ss_pred HHHHHHHHH
Confidence 776666543
No 440
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=44.09 E-value=2e+02 Score=24.43 Aligned_cols=90 Identities=11% Similarity=0.171 Sum_probs=55.1
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCC---------
Q 048578 293 EKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKV--------- 363 (519)
Q Consensus 293 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--------- 363 (519)
++....|-.+..+-++.-+.+++.+.+- ...=.+++..|-+..+|.++.++++.+.+ ..+
T Consensus 104 dk~~vPFceFAetV~k~~q~~e~dK~~L----------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~e-l~i~ft~LKGL~ 172 (233)
T PF14669_consen 104 DKPGVPFCEFAETVCKDPQNDEVDKTLL----------GRIGISLMYSYHKTLQWSKGRKVLDKLHE-LQIHFTSLKGLT 172 (233)
T ss_pred ccCCCCHHHHHHHHhcCCccchhhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhccCcc
Confidence 3344555555555555544444332221 11223556678888888898888888766 222
Q ss_pred -----CCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 048578 364 -----EPNVKHYGCLVDLLCRARLLDEAYEVIRNM 393 (519)
Q Consensus 364 -----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 393 (519)
.+.-...|.-...+.+.|.++.|+.++++-
T Consensus 173 g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 173 GPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred CccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 233455667777888888888888888765
No 441
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=43.68 E-value=46 Score=32.36 Aligned_cols=101 Identities=13% Similarity=0.028 Sum_probs=61.5
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC--C-hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcH
Q 048578 272 TDMYAKCGYIEEALRVFKIVLEK--N-VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDV-TLIAVLTACSHAGLI 347 (519)
Q Consensus 272 ~~~~~~~g~~~~a~~~~~~~~~~--~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~ 347 (519)
...+...+.++.|..++.++++. | +..|..-..++.+.+++..|+.=+.+.++. .|+.. .|..=..+|...+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIEL--DPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhc--CchhhheeeeccHHHHhHHHH
Confidence 44556667788888888777653 2 233444446777778888777777666664 34432 444445566666667
Q ss_pred HHHHHHHHHcHHhcCCCCChhHHHHHHHHH
Q 048578 348 EKGKEIFYNMRRDYKVEPNVKHYGCLVDLL 377 (519)
Q Consensus 348 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (519)
.+|...|+.... +.|+..-....+.-|
T Consensus 89 ~~A~~~l~~~~~---l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 89 KKALLDLEKVKK---LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHhhh---cCcCcHHHHHHHHHH
Confidence 777777766654 456655555555444
No 442
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=43.53 E-value=1.5e+02 Score=23.93 Aligned_cols=62 Identities=8% Similarity=0.086 Sum_probs=38.5
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcC
Q 048578 217 LFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCG 279 (519)
Q Consensus 217 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 279 (519)
+.+.+++.|.+++..- ..++..+.+.++.-.|..+++.+.+.+...+..|...-++.+...|
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 4445566676665533 2455666666666778888888888776665555544555555555
No 443
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=43.27 E-value=39 Score=29.43 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=28.2
Q ss_pred hccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 048578 342 SHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP 397 (519)
Q Consensus 342 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p 397 (519)
.+.++.+.+.+++..... -.+.....|-.+...-.+.|+++.|.+-+++. .+.|
T Consensus 6 ~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 6 AESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred cccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 344555555555555544 22334445555555555555555555555554 4444
No 444
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=42.41 E-value=1.6e+02 Score=22.94 Aligned_cols=43 Identities=7% Similarity=0.129 Sum_probs=22.8
Q ss_pred cchHHHHHHHHHhCCCCC-chhHHHHHHHHHHhcCChHHHHHHHh
Q 048578 145 RQVKGVHSLVVKSKDFNS-VIHSLTRLITFYCNFGDVKSAQLLFD 188 (519)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 188 (519)
++..+++..|...+ +.. -...|......+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~-IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKG-IGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCC-cchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33444555554444 332 23345555566666666666666664
No 445
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=42.10 E-value=3e+02 Score=25.84 Aligned_cols=90 Identities=14% Similarity=0.112 Sum_probs=46.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-------CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchH----
Q 048578 371 GCLVDLLCRARLLDEAYEVIRNM-------PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNY---- 439 (519)
Q Consensus 371 ~~l~~~~~~~~~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~---- 439 (519)
..+.+.|.+.|+.++-..+.... +-.........++..+... .+..+.-..+...+++.....-++|
T Consensus 52 lel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~Lvd~~~~~--~~~~~~~i~l~~~cIeWA~~ekRtFLRq~ 129 (411)
T KOG1463|consen 52 LELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRSLVDMFLKI--DDGTGDQIELCTECIEWAKREKRTFLRQS 129 (411)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--CCCcchHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34455555555555554444333 2111233444555554432 2233344444555444332222222
Q ss_pred --HHHHHHHHhcCCchHHHHHHHHH
Q 048578 440 --VLMSNIYAAKAQWDDAGKMRRLM 462 (519)
Q Consensus 440 --~~l~~~~~~~g~~~~A~~~~~~m 462 (519)
..++.+|...++|.+|+.+...+
T Consensus 130 Learli~Ly~d~~~YteAlaL~~~L 154 (411)
T KOG1463|consen 130 LEARLIRLYNDTKRYTEALALINDL 154 (411)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 36888999999999999866554
No 446
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=42.03 E-value=3e+02 Score=25.80 Aligned_cols=119 Identities=10% Similarity=0.007 Sum_probs=84.0
Q ss_pred HHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHH
Q 048578 347 IEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIA 424 (519)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~ 424 (519)
.+.-+.+++++.+. .+.+......+++.+.+..+.++..+.++++ ...| +...|...|......-..-.++.....
T Consensus 47 ~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 35567788888883 3456677778889999998888888888888 3345 566788888765442224467888888
Q ss_pred HHHHHhhC------C-----CCC-------chHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 425 MERLIKLE------P-----FND-------GNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 425 ~~~~~~~~------p-----~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
|.+.++.- . ..+ ..+..+...+..+|-.+.|..+++-+.+.++
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 88776421 0 111 1344555556789999999999999999887
No 447
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=41.33 E-value=2.8e+02 Score=25.30 Aligned_cols=151 Identities=8% Similarity=-0.112 Sum_probs=75.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcC-----
Q 048578 311 CGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSH----AGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRAR----- 381 (519)
Q Consensus 311 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----- 381 (519)
+..+|.++|+.+-+.|..+ ....|...|.. ..+..+|...|++..+ .|..+...+...+...|..-.
T Consensus 92 ~~~~A~~~~~~~a~~g~~~---a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~-~g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 92 DKTKAADWYRCAAADGLAE---ALFNLGLMYANGRGVPLDLVKALKYYEKAAK-LGNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred cHHHHHHHHHHHhhcccHH---HHHhHHHHHhcCCCcccCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHcChhhhcc
Confidence 3555666666555544221 11122222222 2366666666666666 244332222333333333321
Q ss_pred --ChHHHHHHHHhCCCCCCHHHHHHHHHHHcc-ccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC--------
Q 048578 382 --LLDEAYEVIRNMPMEPNAVLWGSLLTACAS-ADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKA-------- 450 (519)
Q Consensus 382 --~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 450 (519)
+...|...+.++-..-+......+...|.. .+-..+.++|...|+++.+.+. ......+. .+...|
T Consensus 168 ~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~ 244 (292)
T COG0790 168 AYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAF 244 (292)
T ss_pred cHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhh
Confidence 223566666666111123333333333322 1224578888888888888776 44555555 555444
Q ss_pred -------CchHHHHHHHHHHhCCCc
Q 048578 451 -------QWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 451 -------~~~~A~~~~~~m~~~~~~ 468 (519)
+...|...+......+..
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCh
Confidence 666777777777666654
No 448
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.29 E-value=2.7e+02 Score=25.09 Aligned_cols=153 Identities=14% Similarity=0.073 Sum_probs=85.6
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhccCChHHHHHHHHHHHHc---CC--CcchhHHHHHHHHHHhc
Q 048578 207 KQKNYREGIDLFRKMRDSGVEVNE---LTLVSVLSACANLGASELGKWVHEFVNKN---CI--ILNDKLGAALTDMYAKC 278 (519)
Q Consensus 207 ~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~ 278 (519)
+..++++|+.-|++..+....-.. .....++....+.+++++....+.+++.. .+ ..+....|++++.-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 455788999999888775322223 34445677788888888887777776531 11 12344556666665555
Q ss_pred CCHHHHHHHHhhcCC-----CChh----hHHHHHHHHHHcCChHHHHHHHHHHHHCCC----CCCH-------HHHHHHH
Q 048578 279 GYIEEALRVFKIVLE-----KNVC----TWNSIIGGLAIHGCGEEAVKMFWQMQMSGI----KPDD-------VTLIAVL 338 (519)
Q Consensus 279 g~~~~a~~~~~~~~~-----~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~----~p~~-------~~~~~l~ 338 (519)
.+.+--.++|+.-.+ .|.. +-..+...|...+.+.+..++++++...-. .-|. ..|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 555555555443211 1222 223455566666667777777766654311 1111 2344455
Q ss_pred HHHhccCcHHHHHHHHHHcHH
Q 048578 339 TACSHAGLIEKGKEIFYNMRR 359 (519)
Q Consensus 339 ~~~~~~g~~~~a~~~~~~~~~ 359 (519)
+.|..+.+-.+-..+++....
T Consensus 199 QmYT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALH 219 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHH
Confidence 556666665666666655443
No 449
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=41.20 E-value=2.9e+02 Score=25.49 Aligned_cols=72 Identities=10% Similarity=0.178 Sum_probs=53.3
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHh----------cCChHH
Q 048578 316 VKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCR----------ARLLDE 385 (519)
Q Consensus 316 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~ 385 (519)
.++|+.+.+.++.|.-..|..+.-.+.+.=.+...+.+|+.+..+ ..-|..|+..||. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 567888888889999888888887788888888899999988762 2235556665553 467777
Q ss_pred HHHHHHhC
Q 048578 386 AYEVIRNM 393 (519)
Q Consensus 386 A~~~~~~~ 393 (519)
-+++++.-
T Consensus 337 nmkLLQ~y 344 (370)
T KOG4567|consen 337 NMKLLQNY 344 (370)
T ss_pred HHHHHhcC
Confidence 77777664
No 450
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=41.16 E-value=3e+02 Score=25.61 Aligned_cols=57 Identities=9% Similarity=0.205 Sum_probs=30.9
Q ss_pred HHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 048578 337 VLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM 393 (519)
Q Consensus 337 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 393 (519)
+.-+..+.|+..+|.+.|+.+.++..+..-...-..|+.++....-+.+...++.+.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445667777777777777664222111223335666666666555555554443
No 451
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=40.22 E-value=3.2e+02 Score=25.69 Aligned_cols=97 Identities=13% Similarity=0.077 Sum_probs=57.3
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHH-HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh
Q 048578 168 TRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREG-IDLFRKMRDSGVEVNELTLVSVLSACANLGAS 246 (519)
Q Consensus 168 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a-~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 246 (519)
.-+.+.+++.++.+.+..+-+.+..--.....+++.++-...-.+.. ..+++.+... ||......++++.+.....
T Consensus 170 QGIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~ 246 (340)
T PF12069_consen 170 QGIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPAS 246 (340)
T ss_pred hHHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCch
Confidence 34567777777777766666666553334445555555444433333 3344444333 7888888888888777766
Q ss_pred HHHHHHHHHHHHcCCCcchhH
Q 048578 247 ELGKWVHEFVNKNCIILNDKL 267 (519)
Q Consensus 247 ~~a~~~~~~~~~~~~~~~~~~ 267 (519)
......+..+.+.....+..+
T Consensus 247 ~~~~~~i~~~L~~~~~~~~e~ 267 (340)
T PF12069_consen 247 DLVAILIDALLQSPRLCHPEV 267 (340)
T ss_pred hHHHHHHHHHhcCcccCChHH
Confidence 666665666666544333433
No 452
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=40.18 E-value=1.3e+02 Score=24.95 Aligned_cols=38 Identities=8% Similarity=0.031 Sum_probs=18.4
Q ss_pred CcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCCh
Q 048578 345 GLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLL 383 (519)
Q Consensus 345 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 383 (519)
++.-.|.++++.+.+. +...+..|...-+..+...|-+
T Consensus 39 ~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 39 PGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred CCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCE
Confidence 3444555555555552 3344444444445555555543
No 453
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=39.72 E-value=1.8e+02 Score=23.41 Aligned_cols=43 Identities=14% Similarity=0.064 Sum_probs=20.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 048578 302 IIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHA 344 (519)
Q Consensus 302 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 344 (519)
++..+...++.-.|.++++++.+.+...+..|....++.+...
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~ 68 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEA 68 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHC
Confidence 3444444444455555555555554444444444444444433
No 454
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=39.49 E-value=1.9e+02 Score=29.81 Aligned_cols=47 Identities=11% Similarity=-0.026 Sum_probs=25.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCcH
Q 048578 301 SIIGGLAIHGCGEEAVKMFWQMQMS--GIKPDDVTLIAVLTACSHAGLI 347 (519)
Q Consensus 301 ~l~~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~~ 347 (519)
.++.+|..+|++..+.++++..... |-+.=...|+..|+.+.+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 5566666666666666666665432 2222223455555555555543
No 455
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=39.49 E-value=3e+02 Score=25.14 Aligned_cols=29 Identities=14% Similarity=0.027 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHcHH
Q 048578 331 DVTLIAVLTACSHAGLIEKGKEIFYNMRR 359 (519)
Q Consensus 331 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (519)
...+..+..-|++.++.+.+.+..++..+
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~ 143 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMR 143 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 34556666666666666666666555443
No 456
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=39.37 E-value=36 Score=26.76 Aligned_cols=32 Identities=31% Similarity=0.402 Sum_probs=24.3
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048578 307 AIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTA 340 (519)
Q Consensus 307 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 340 (519)
...|.-..|..+|++|.+.|-+||. |+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 3456677899999999999988874 5555544
No 457
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.94 E-value=5.5e+02 Score=27.97 Aligned_cols=112 Identities=13% Similarity=0.069 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCc--h-----hHHHHHHHHHHHcCCh--hHHHHHHHHHHhCCCCCCHHHHHH-
Q 048578 166 SLTRLITFYCNFGDVKSAQLLFDQMTEKN--V-----VTWTAMINGHVKQKNY--REGIDLFRKMRDSGVEVNELTLVS- 235 (519)
Q Consensus 166 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-----~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~- 235 (519)
-|..|+..|...|+.++|+++|......+ . ..+--++..+-+.+.. +-++++-....+....-....+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 57889999999999999999999887622 1 1233344444444444 555555444443321111111111
Q ss_pred -----------HHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHh
Q 048578 236 -----------VLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAK 277 (519)
Q Consensus 236 -----------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 277 (519)
.+-.+......+.+..+++.+....-..+....+.++..|++
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 112244556667777788887776666677777777777765
No 458
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=37.89 E-value=1.8e+02 Score=22.02 Aligned_cols=29 Identities=14% Similarity=0.364 Sum_probs=26.2
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048578 96 TFAFNTVIRGYAEAGLGHRGIQLYTQMIG 124 (519)
Q Consensus 96 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 124 (519)
..-|..++.-|...|..++|++++.+...
T Consensus 39 ~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 39 HGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred cCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 34699999999999999999999999987
No 459
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=37.83 E-value=3.5e+02 Score=25.42 Aligned_cols=163 Identities=12% Similarity=0.043 Sum_probs=84.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC-------CCh--hhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCHHHHHH
Q 048578 270 ALTDMYAKCGYIEEALRVFKIVLE-------KNV--CTWNSIIGGLAIHGCGEEAVKMFWQMQMS----GIKPDDVTLIA 336 (519)
Q Consensus 270 ~l~~~~~~~g~~~~a~~~~~~~~~-------~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~~~~~ 336 (519)
.++..|...+++.+|+.+...+.+ +.. ..+-.=-.+|....+..+|..-+...+.. -++|....-.-
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD 212 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD 212 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 467777777777777766544421 110 01111112344445555555555544321 13444333333
Q ss_pred HHHH--HhccCcHHHHHHHHHHcHHhcCCCCC-hhHHH---HHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHH
Q 048578 337 VLTA--CSHAGLIEKGKEIFYNMRRDYKVEPN-VKHYG---CLVDLLCRARLLDEAYEVIRNM----PMEPNAVLWGSLL 406 (519)
Q Consensus 337 l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~---~l~~~~~~~~~~~~A~~~~~~~----~~~p~~~~~~~ll 406 (519)
|.++ ++...++..|..+|-+..+.+..-.+ +.... .|+-+=.-.+..++...++..= -..|+.....++.
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavA 292 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVA 292 (411)
T ss_pred HhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHH
Confidence 3332 23337888888888888773322222 22222 2333333456666666555332 2246777777787
Q ss_pred HHHccccCCCCHHHHHHHHHHHHhhCC
Q 048578 407 TACASADDGANVELAEIAMERLIKLEP 433 (519)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p 433 (519)
.++.++. ..+++.|..-++.-+..+|
T Consensus 293 eA~~nRS-LkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 293 EAFGNRS-LKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHhcCCc-HHHHHHHHHHhHHHHhcCh
Confidence 7776632 5677777777776555544
No 460
>PRK09857 putative transposase; Provisional
Probab=36.83 E-value=2.2e+02 Score=26.30 Aligned_cols=66 Identities=8% Similarity=0.076 Sum_probs=46.0
Q ss_pred HHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccC
Q 048578 402 WGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKN 470 (519)
Q Consensus 402 ~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 470 (519)
+..++..... .++.++..++++.+.+..|........++.-+.+.|.-+++.++.++|...|+..+
T Consensus 209 ~~~ll~Yi~~---~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQ---TGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhh---ccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3444444445 55666666666666666565556666778888888888889999999999988753
No 461
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.80 E-value=4e+02 Score=25.76 Aligned_cols=56 Identities=18% Similarity=0.231 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC------CChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 048578 268 GAALTDMYAKCGYIEEALRVFKIVLE------KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQ 323 (519)
Q Consensus 268 ~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 323 (519)
+.-+.+.|..+|+++.|++.|.+... .-...|-.+|..-...|+|.....+..+..
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 33445555556666666666655322 122234444444445555555555554444
No 462
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.74 E-value=3.5e+02 Score=27.84 Aligned_cols=85 Identities=11% Similarity=-0.002 Sum_probs=58.4
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-C------HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 048578 377 LCRARLLDEAYEVIRNM-PMEP-N------AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAA 448 (519)
Q Consensus 377 ~~~~~~~~~A~~~~~~~-~~~p-~------~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 448 (519)
..+..++..+.++|+.- ..-| | ......+--.|.. ..+.|.|.++++++.+.+|.++-.-..+..+...
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~---L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~ 440 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLK---LEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLA 440 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 34566777777776543 1111 1 1234444445666 7788888888888888888877777777788888
Q ss_pred cCCchHHHHHHHHHHh
Q 048578 449 KAQWDDAGKMRRLMKE 464 (519)
Q Consensus 449 ~g~~~~A~~~~~~m~~ 464 (519)
.|+-++|+........
T Consensus 441 E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 441 EDKSEEALTCLQKIKS 456 (872)
T ss_pred hcchHHHHHHHHHHHh
Confidence 8888888888777653
No 463
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=36.58 E-value=2.9e+02 Score=24.17 Aligned_cols=55 Identities=20% Similarity=0.227 Sum_probs=24.8
Q ss_pred HHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHH----HHHhcCChHHHHHHHHh
Q 048578 337 VLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVD----LLCRARLLDEAYEVIRN 392 (519)
Q Consensus 337 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~A~~~~~~ 392 (519)
-|......|+.+.|++....+... -+..|...+-.|.. -+.+.|..++|+++.+.
T Consensus 70 ~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 70 QIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344445566666666655555431 22233222211111 13455556666666554
No 464
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=36.57 E-value=4.4e+02 Score=26.21 Aligned_cols=115 Identities=17% Similarity=0.149 Sum_probs=60.5
Q ss_pred HHHcCChHHHHHHHHHHH---HCCC--CCCHH---HHHHHHHHHhccCcHHHHHHHHHHcHH------hcCCCCCh----
Q 048578 306 LAIHGCGEEAVKMFWQMQ---MSGI--KPDDV---TLIAVLTACSHAGLIEKGKEIFYNMRR------DYKVEPNV---- 367 (519)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~---~~g~--~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~---- 367 (519)
+.-.|++.+|.+++-..- ..|. .|.-. .++.+.-...+.|.+..+..+|.+..+ ..|++|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 445677777777765531 2232 22211 234555555566666666666665553 12433321
Q ss_pred -------hHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHccccCCCCHHHH
Q 048578 368 -------KHYGCLVDLLCRARLLDEAYEVIRNM--PMEPNAVLWGSLLTACASADDGANVELA 421 (519)
Q Consensus 368 -------~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~~~~a 421 (519)
.+|| ..-.|...|++-.|.+.|.+. -+..++..|-.+..+|..+.+.+-.++.
T Consensus 330 s~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~ 391 (696)
T KOG2471|consen 330 SQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEG 391 (696)
T ss_pred hcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhc
Confidence 1222 334456677777777776665 3445666677777766654433333333
No 465
>PF14044 NETI: NETI protein
Probab=36.49 E-value=26 Score=22.56 Aligned_cols=18 Identities=11% Similarity=0.211 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhcccCCC
Q 048578 500 SMLEYVAISLREECYAAR 517 (519)
Q Consensus 500 ~~~~~~~~~~~~~~~~p~ 517 (519)
+.+++.+..|+..||.|-
T Consensus 8 ETI~~CL~RM~~eGY~Pv 25 (57)
T PF14044_consen 8 ETISDCLARMKKEGYMPV 25 (57)
T ss_pred CcHHHHHHHHHHcCCCce
Confidence 346677777899999995
No 466
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=36.44 E-value=1.6e+02 Score=30.76 Aligned_cols=26 Identities=0% Similarity=-0.051 Sum_probs=13.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 048578 299 WNSIIGGLAIHGCGEEAVKMFWQMQM 324 (519)
Q Consensus 299 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 324 (519)
-..++-.|....+++..+++.+.+++
T Consensus 204 V~nlmlSyRDvQdY~amirLVe~Lk~ 229 (1226)
T KOG4279|consen 204 VSNLMLSYRDVQDYDAMIRLVEDLKR 229 (1226)
T ss_pred HHHHHhhhccccchHHHHHHHHHHHh
Confidence 33444445555555555555555554
No 467
>PHA02875 ankyrin repeat protein; Provisional
Probab=36.17 E-value=4.1e+02 Score=25.76 Aligned_cols=54 Identities=6% Similarity=-0.124 Sum_probs=26.1
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChh---hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 048578 274 MYAKCGYIEEALRVFKIVLEKNVC---TWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDD 331 (519)
Q Consensus 274 ~~~~~g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 331 (519)
..+..|+.+-+.-+++.-..++.. ...+.+...+..|+.+ +.+-+.+.|..++.
T Consensus 174 ~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 174 IAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred HHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 344556666666665554433221 1123344344555543 44444556666654
No 468
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=36.00 E-value=92 Score=23.68 Aligned_cols=45 Identities=20% Similarity=0.164 Sum_probs=29.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 048578 302 IIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGL 346 (519)
Q Consensus 302 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 346 (519)
++..+...+..-.|.++++.+.+.+..++..|....++.+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 444555555666777777777777666666666666666666554
No 469
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=35.97 E-value=4.7e+02 Score=26.46 Aligned_cols=126 Identities=17% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHhhc-----CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 048578 271 LTDMYAKCGYIEEALRVFKIV-----LEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAG 345 (519)
Q Consensus 271 l~~~~~~~g~~~~a~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 345 (519)
++.-|.+.+++++|..++..| .+.-....+.+++.+.+..--++.+..++.+...=..|....-.....-|.. .
T Consensus 414 L~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d-~ 492 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD-P 492 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH-H
Q ss_pred cHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHH
Q 048578 346 LIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEI 423 (519)
Q Consensus 346 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~ 423 (519)
=.+-|.++|..+.+ .+++++|..+--.+| +...|.-+-..... .|+.+.|..
T Consensus 493 V~~~aRRfFhhLLR--------------------~~rfekAFlLAvdi~---~~DLFmdlh~~A~~---~ge~~La~~ 544 (545)
T PF11768_consen 493 VSDLARRFFHHLLR--------------------YQRFEKAFLLAVDIG---DRDLFMDLHYLAKD---KGELALAEV 544 (545)
T ss_pred HHHHHHHHHHHHHH--------------------hhHHHHHHHHHHhcc---chHHHHHHHHHHHh---ccchhhhhc
No 470
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=35.93 E-value=1.1e+02 Score=20.56 Aligned_cols=48 Identities=13% Similarity=-0.015 Sum_probs=25.4
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 048578 294 KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACS 342 (519)
Q Consensus 294 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 342 (519)
+....++.++...++..-.+.++..+.++...|. .+..+|.--++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 3444555566666666666666666666666652 34444444444433
No 471
>PRK13342 recombination factor protein RarA; Reviewed
Probab=35.92 E-value=4.3e+02 Score=25.85 Aligned_cols=96 Identities=14% Similarity=0.063 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhc---CCCChhhHHHHH
Q 048578 227 EVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIV---LEKNVCTWNSII 303 (519)
Q Consensus 227 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~l~ 303 (519)
..+......++..+ .|+...+..+++.+...+...+.. ...+++... ..++......++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~----------------~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSITLE----------------LLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHH----------------HHHHHHhhhhhccCCCccHHHHHH
Confidence 44555555555443 677777777776665432111211 111222111 112222334444
Q ss_pred HHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048578 304 GGLAI---HGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTA 340 (519)
Q Consensus 304 ~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 340 (519)
.++.+ .++++.|+.++..|.+.|..|....-..++.+
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44444 47888888888888888877765544444433
No 472
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=35.73 E-value=2.1e+02 Score=22.20 Aligned_cols=68 Identities=15% Similarity=0.012 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHH----HH
Q 048578 367 VKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYV----LM 442 (519)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~----~l 442 (519)
..++..|..++...|++++++.-- +.|..+|++--+++.+....|. .-
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA----------------------------~~aL~YFNRRGEL~qdeGklWIaaVfsr 106 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSA----------------------------DRALRYFNRRGELHQDEGKLWIAAVFSR 106 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHH----------------------------HHHHHHHHHH--TTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHH----------------------------HHHHHHHhhccccccccchhHHHHHHHH
Confidence 345556666677777776654432 2233333333344444333333 33
Q ss_pred HHHHHhcCCchHHHHHHHHH
Q 048578 443 SNIYAAKAQWDDAGKMRRLM 462 (519)
Q Consensus 443 ~~~~~~~g~~~~A~~~~~~m 462 (519)
+.++...|+.++|.+.|+..
T Consensus 107 a~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 107 AVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhcCChHHHHHHHHHH
Confidence 44556667777777766543
No 473
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=35.71 E-value=2.8e+02 Score=23.75 Aligned_cols=36 Identities=11% Similarity=0.036 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 048578 296 VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDV 332 (519)
Q Consensus 296 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 332 (519)
....+.+++.+...|+++.|.++|--+.... ..|..
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR 76 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIR 76 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChH
Confidence 3467778889999999999999999888653 44443
No 474
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=35.17 E-value=3.7e+02 Score=24.88 Aligned_cols=43 Identities=9% Similarity=0.001 Sum_probs=20.0
Q ss_pred HHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 048578 251 WVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE 293 (519)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 293 (519)
++++.+...++.|.-..+.-+.-.+.+.=.+.+++.+++.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 3444444444444444444444444444444455555544433
No 475
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=34.38 E-value=3.2e+02 Score=23.95 Aligned_cols=95 Identities=13% Similarity=0.072 Sum_probs=52.6
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCC---ChhHHH--HHHHHHHhcCChHHHHHHHHhC---CCCCC
Q 048578 327 IKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEP---NVKHYG--CLVDLLCRARLLDEAYEVIRNM---PMEPN 398 (519)
Q Consensus 327 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~--~l~~~~~~~~~~~~A~~~~~~~---~~~p~ 398 (519)
+.+...-++.|+--|.-...+.+|...|..- .++.| +..++. .-|+.....|+.++|++..... -+.-|
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e---~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKE---SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccc---cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Confidence 4566666666666665555555565555443 24444 333333 3566677888888888888877 22233
Q ss_pred HHHHHHHH--HH--HccccCCCCHHHHHHHHHH
Q 048578 399 AVLWGSLL--TA--CASADDGANVELAEIAMER 427 (519)
Q Consensus 399 ~~~~~~ll--~~--~~~~~~~~~~~~a~~~~~~ 427 (519)
...+-.|. .. ..+ .|..++|.++.+.
T Consensus 99 ~~l~F~Lq~q~lIEliR---~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 99 RELFFHLQQLHLIELIR---EGKTEEALEFAQT 128 (228)
T ss_pred hhHHHHHHHHHHHHHHH---hhhHHHHHHHHHH
Confidence 32222222 11 344 5667777776665
No 476
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=34.30 E-value=1.5e+02 Score=26.48 Aligned_cols=19 Identities=11% Similarity=0.071 Sum_probs=8.8
Q ss_pred HHHhccCcHHHHHHHHHHc
Q 048578 339 TACSHAGLIEKGKEIFYNM 357 (519)
Q Consensus 339 ~~~~~~g~~~~a~~~~~~~ 357 (519)
.-|...|++++|.++|+.+
T Consensus 186 ~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 186 EEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 3344444444444444444
No 477
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=34.28 E-value=1.8e+02 Score=20.95 Aligned_cols=41 Identities=7% Similarity=0.061 Sum_probs=20.6
Q ss_pred HHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 048578 251 WVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIV 291 (519)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 291 (519)
++|+.....|+..|+.+|..+++.+.-.=..+...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45555555555555555555555544444444444444433
No 478
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=34.10 E-value=1.8e+02 Score=20.85 Aligned_cols=39 Identities=10% Similarity=0.093 Sum_probs=26.1
Q ss_pred hcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHH
Q 048578 277 KCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEA 315 (519)
Q Consensus 277 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 315 (519)
...+.+++..+++.++.++..+|..+..++...|...-|
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 334567777777777777777777777777666654433
No 479
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=33.94 E-value=2.4e+02 Score=22.44 Aligned_cols=71 Identities=13% Similarity=0.108 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHHHhccC---cHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 048578 328 KPDDVTLIAVLTACSHAG---LIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN 398 (519)
Q Consensus 328 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~ 398 (519)
.++..+-..+..++.++. +..+.+.+|+.+.+...-.........|.-++.+.++++.++++.+.. ..+||
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 555555555666666554 455677788777751111122334445677788888888888887766 43443
No 480
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=33.59 E-value=2.5e+02 Score=27.17 Aligned_cols=27 Identities=26% Similarity=0.201 Sum_probs=18.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 048578 371 GCLVDLLCRARLLDEAYEVIRNM-PMEP 397 (519)
Q Consensus 371 ~~l~~~~~~~~~~~~A~~~~~~~-~~~p 397 (519)
..|.-+|.+.++.+-|+..-.+- ...|
T Consensus 232 tklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 232 TKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 45677888999999888765443 4444
No 481
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=33.48 E-value=80 Score=24.26 Aligned_cols=45 Identities=18% Similarity=0.133 Sum_probs=31.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 048578 301 SIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAG 345 (519)
Q Consensus 301 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 345 (519)
.++..+...+.+-.|.++++.+.+.|...+..|...-+..+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 456666667777888888888888877777777666666666655
No 482
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=33.29 E-value=94 Score=17.47 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHhhCCCCCchHHHHH
Q 048578 417 NVELAEIAMERLIKLEPFNDGNYVLMS 443 (519)
Q Consensus 417 ~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (519)
.++.|..+|++.+...|. +..|...+
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 467788888887777665 66666544
No 483
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=32.68 E-value=2e+02 Score=27.00 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=29.8
Q ss_pred ChHHHHHHHHhC-CCCCCH----HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCC
Q 048578 382 LLDEAYEVIRNM-PMEPNA----VLWGSLLTACASADDGANVELAEIAMERLIKLEP 433 (519)
Q Consensus 382 ~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p 433 (519)
-.++++.++..+ ..-|+. .-|.++...... .|.++..+.+|++++..+.
T Consensus 118 p~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~---~~~~e~vi~iyEeAi~agA 171 (353)
T PF15297_consen 118 PKEEILATLSDLIKNIPDAKKLAKYWICLARLEPR---TGPIEDVIAIYEEAILAGA 171 (353)
T ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh---cCCHHHHHHHHHHHHHcCC
Confidence 344666666655 223443 356666666666 6777777777777777663
No 484
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=32.20 E-value=1.6e+02 Score=20.29 Aligned_cols=30 Identities=10% Similarity=0.122 Sum_probs=16.9
Q ss_pred ChHHHHHHHhcCC---CCCcchHHHHHHHHHhc
Q 048578 80 QIAYAHLVFNQII---NPSTFAFNTVIRGYAEA 109 (519)
Q Consensus 80 ~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~ 109 (519)
+.+.|..++..+. ++++..||++...+.+.
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHc
Confidence 4555666665553 25566666666555443
No 485
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=32.15 E-value=1.6e+02 Score=26.51 Aligned_cols=56 Identities=25% Similarity=0.130 Sum_probs=48.6
Q ss_pred HHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048578 407 TACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
..+.. .++++.|....++.+..+|.++.-+..-+-+|.+.|...-|.+-++...+.
T Consensus 189 ~~~~~---e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 189 AALLR---ELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHH---hhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 34666 788999999999999999999998999999999999999999988886553
No 486
>PF15469 Sec5: Exocyst complex component Sec5
Probab=31.67 E-value=3.1e+02 Score=22.97 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=16.5
Q ss_pred CCchHHHHHHHHHHhCCCccCCcccE
Q 048578 450 AQWDDAGKMRRLMKERNIVKNPGCSV 475 (519)
Q Consensus 450 g~~~~A~~~~~~m~~~~~~~~~~~~~ 475 (519)
...++..++++.+.+.+...+|.+.|
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~~~ 178 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIWYW 178 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 34566666666666666666666655
No 487
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=31.00 E-value=1.9e+02 Score=20.95 Aligned_cols=60 Identities=7% Similarity=0.145 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 048578 46 FKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLG 112 (519)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 112 (519)
...+++.+.+.|+-.+ ...-...+.. .+.+.+.++++.++.....+|..+..++-..+..
T Consensus 22 ~~~v~~~L~~~gvlt~----~~~~~I~~~~---t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~ 81 (90)
T cd08332 22 LDELLIHLLQKDILTD----SMAESIMAKP---TSFSQNVALLNLLPKRGPRAFSAFCEALRETSQE 81 (90)
T ss_pred HHHHHHHHHHcCCCCH----HHHHHHHcCC---CcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChH
Confidence 3567777777775422 2222222333 5778888899988888888999998888765543
No 488
>PRK09169 hypothetical protein; Validated
Probab=30.68 E-value=1.1e+03 Score=28.99 Aligned_cols=397 Identities=10% Similarity=0.016 Sum_probs=217.3
Q ss_pred CCchhHHHHHHHHHhhcCCCChHHHHHHHhcC----C-------CCCcchHHHHHHHHHhcCChhHHH---HHHHHHHhC
Q 048578 60 NRTISDTQLAKLIESLVNSSQIAYAHLVFNQI----I-------NPSTFAFNTVIRGYAEAGLGHRGI---QLYTQMIGN 125 (519)
Q Consensus 60 ~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~----~-------~~~~~~~~~ll~~~~~~g~~~~a~---~~~~~m~~~ 125 (519)
.+......++++++|. -+-......-+.+ . .-+......++++++|-.+-+.+. ..+..-+..
T Consensus 202 l~~q~va~~lnalSKw---p~~~~cr~a~~~lA~rL~~~~~l~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~ 278 (2316)
T PRK09169 202 MDAQEVANALNALSKW---PDSPRCRNAAERLAERLADEPGLLQSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAR 278 (2316)
T ss_pred cchHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHHhcChHHHHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhc
Confidence 3455566677777776 4444333333222 1 124455677888888876554333 222222221
Q ss_pred ----CCCCCcchHHHHHHHHcCccch-------HHHHHHHHHhCC--CCCchhHHHHHHHHHHhcCChHHHHH----HHh
Q 048578 126 ----GLDPDSFTYPILLKACGDLRQV-------KGVHSLVVKSKD--FNSVIHSLTRLITFYCNFGDVKSAQL----LFD 188 (519)
Q Consensus 126 ----g~~p~~~~~~~ll~~~~~~~~~-------~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~----~~~ 188 (519)
....+.......++++++..+. ..+-..+..... ...+..-....++++++..+.+.+.. +-.
T Consensus 279 ~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~ 358 (2316)
T PRK09169 279 EPGLRLALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERGLLQAMNAQAVANALNALSKWPDEEACRAAAEALAA 358 (2316)
T ss_pred ChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 1235666788889999888661 112222211111 22355566777888888887665332 222
Q ss_pred cCC-------CCchhHHHHHHHHHHHcCChhH----HHHHHHHHHhC-C--CCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 048578 189 QMT-------EKNVVTWTAMINGHVKQKNYRE----GIDLFRKMRDS-G--VEVNELTLVSVLSACANLGASELGKWVHE 254 (519)
Q Consensus 189 ~~~-------~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~-~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 254 (519)
.+. .-+..-....+.+++|.++-+. +..+...+... + -..|..-....+.++++-+.-+.+.....
T Consensus 359 rL~~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~ 438 (2316)
T PRK09169 359 RLARDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAAL 438 (2316)
T ss_pred HHHhChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHH
Confidence 221 1345556677888888776543 33333333322 1 13566778888999998876554433322
Q ss_pred HH----HHc---CCCcchhHHHHHHHHHHhcCCHHHH----HHHHhhcCC-------CChhhHHHHHHHHHHcCChHHHH
Q 048578 255 FV----NKN---CIILNDKLGAALTDMYAKCGYIEEA----LRVFKIVLE-------KNVCTWNSIIGGLAIHGCGEEAV 316 (519)
Q Consensus 255 ~~----~~~---~~~~~~~~~~~l~~~~~~~g~~~~a----~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~a~ 316 (519)
.+ ... .-..++.-....+.++.+-++.+.. ..+...+.. -+..-....+.++++-++.+.+.
T Consensus 439 aLA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~ 518 (2316)
T PRK09169 439 ALAARLAADARLRNALSAQELANALNALSKWPDEAACRRAAEALAARLAGDAELRQALDAQGLANALNALSKWPDSDACR 518 (2316)
T ss_pred HHHHHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHH
Confidence 22 211 1245677777788888887764432 333333321 14556777888888888766543
Q ss_pred HHH----HHHHHC---CCCCCHHHHHHHHHHHhccCcHHH----HHHHHHHcHHhc--CCCCChhHHHHHHHHHHhcCCh
Q 048578 317 KMF----WQMQMS---GIKPDDVTLIAVLTACSHAGLIEK----GKEIFYNMRRDY--KVEPNVKHYGCLVDLLCRARLL 383 (519)
Q Consensus 317 ~~~----~~m~~~---g~~p~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 383 (519)
..- .++... --..+..-+...+.++++-.+.+. |..+...+..+. --..+.......+.++.+.+.-
T Consensus 519 ~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~ 598 (2316)
T PRK09169 519 AAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDE 598 (2316)
T ss_pred HHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCc
Confidence 332 222211 123455677788888988877433 233333332210 0123556777888889888764
Q ss_pred HHH----HHHHHhC----C--CCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHh---hCC-----CCCchHHHHHHH
Q 048578 384 DEA----YEVIRNM----P--MEPNAVLWGSLLTACASADDGANVELAEIAMERLIK---LEP-----FNDGNYVLMSNI 445 (519)
Q Consensus 384 ~~A----~~~~~~~----~--~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~---~~p-----~~~~~~~~l~~~ 445 (519)
..+ ..+...+ + -.-|..-+...+.++.+ -.+.+........+.. .++ -++..+..++++
T Consensus 599 ~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSK---WP~~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnA 675 (2316)
T PRK09169 599 DACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSK---WPDEDDCRQAAEALAARLLRDAGLPRAFDAQGLANALNA 675 (2316)
T ss_pred hhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhc---CCCchhHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHH
Confidence 332 2233333 1 12366677888888888 5554443333332221 122 266778888899
Q ss_pred HHhcCCchHHHHHHHHH
Q 048578 446 YAAKAQWDDAGKMRRLM 462 (519)
Q Consensus 446 ~~~~g~~~~A~~~~~~m 462 (519)
+.+-.+.+.+.+....+
T Consensus 676 LSKWp~~~~c~~Aa~aL 692 (2316)
T PRK09169 676 LSKWPDEAACRAAALAL 692 (2316)
T ss_pred HHhCCCcHHHHHHHHHH
Confidence 99888776655544444
No 489
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=30.61 E-value=4.2e+02 Score=24.20 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=25.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCcchHH
Q 048578 103 IRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYP 135 (519)
Q Consensus 103 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 135 (519)
.+...+.+++++|+..+.+....|+..|..+.+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~n 42 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLN 42 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhh
Confidence 445567789999999999999998877765543
No 490
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=30.29 E-value=2.7e+02 Score=25.66 Aligned_cols=50 Identities=12% Similarity=0.210 Sum_probs=27.2
Q ss_pred HHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 048578 172 TFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRD 223 (519)
Q Consensus 172 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 223 (519)
..+.+.+++......+..+. ....-...+..+...|++..|++++.+..+
T Consensus 106 ~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 106 RLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33444444444444444442 223334456666777777777777766654
No 491
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=29.95 E-value=2.2e+02 Score=20.64 Aligned_cols=51 Identities=16% Similarity=0.067 Sum_probs=28.8
Q ss_pred HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC--CCchHHHHHHHHHhcCCch
Q 048578 400 VLWGSLLTACASADDGANVELAEIAMERLIKLEPF--NDGNYVLMSNIYAAKAQWD 453 (519)
Q Consensus 400 ~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~ 453 (519)
..-..+...+.. .|+++.|.+.+-.+++.++. +...-..++.++.-.|.-+
T Consensus 23 ~ar~~lA~~~~~---~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 23 DARYALADALLA---AGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHH---TT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 344445555666 67777777777777666544 3556666666666666543
No 492
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=29.79 E-value=1.6e+02 Score=19.84 Aligned_cols=48 Identities=8% Similarity=0.057 Sum_probs=28.0
Q ss_pred CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 048578 193 KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACA 241 (519)
Q Consensus 193 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 241 (519)
+....++.++..++...-.++++..+.+..+.|. .+..+|..-.+.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 4445566667766666667777777777776663 34455544444433
No 493
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.61 E-value=6.2e+02 Score=25.82 Aligned_cols=79 Identities=8% Similarity=0.051 Sum_probs=53.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-ccCChHHHHHHHHHHHHcC---CCcchhHHHHHHHHHHh
Q 048578 202 INGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACA-NLGASELGKWVHEFVNKNC---IILNDKLGAALTDMYAK 277 (519)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~ 277 (519)
|..+.+.|-+..|++.-+-+.+....-|+.....+|+.|+ +..++.-...+++.....+ .-||-..-.++...|..
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 4556788899999988888887765557778888888875 5667777777777765433 34555444555666655
Q ss_pred cCC
Q 048578 278 CGY 280 (519)
Q Consensus 278 ~g~ 280 (519)
...
T Consensus 429 ~~~ 431 (665)
T KOG2422|consen 429 KNE 431 (665)
T ss_pred cCC
Confidence 544
No 494
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=28.94 E-value=2.2e+02 Score=20.36 Aligned_cols=39 Identities=8% Similarity=0.055 Sum_probs=24.6
Q ss_pred hcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHH
Q 048578 176 NFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREG 214 (519)
Q Consensus 176 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 214 (519)
...+.+.|.++++.++..+..+|.....++-..|+..-|
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 344566677777777666677777777766666654433
No 495
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=28.93 E-value=5.4e+02 Score=24.85 Aligned_cols=55 Identities=7% Similarity=-0.017 Sum_probs=31.7
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHh--ccCChHHHHHHHHHHHHc
Q 048578 204 GHVKQKNYREGIDLFRKMRDSGVEVNEL--TLVSVLSACA--NLGASELGKWVHEFVNKN 259 (519)
Q Consensus 204 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 259 (519)
.+...+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344677788888888887765 444443 3333334433 234566666666665544
No 496
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=28.84 E-value=4.2e+02 Score=23.65 Aligned_cols=64 Identities=16% Similarity=0.046 Sum_probs=40.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN 398 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~ 398 (519)
.+...-+++...|++-++++...++.. ..+.++..|-.-.++.+..-+.++|..=|... .+.|.
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~--~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILR--HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 344445556666777777777766666 34556666766667777777777776666555 44554
No 497
>PRK09169 hypothetical protein; Validated
Probab=28.78 E-value=1.2e+03 Score=28.76 Aligned_cols=433 Identities=9% Similarity=-0.001 Sum_probs=240.4
Q ss_pred CcccHHHHHHhccCchHH-------HHHHHHHHH---hcCCCCchhHHHHHHHHHhhcCCCChHHH--------HHHHhc
Q 048578 29 KSHHHLPLLQKCTHLVQF-------KQVHAQIIK---ASFDNRTISDTQLAKLIESLVNSSQIAYA--------HLVFNQ 90 (519)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~-------~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~~~~A--------~~~~~~ 90 (519)
+...+..+|+++++-++. ..+-..+.+ .....++......++++++. .+-+.+ .++...
T Consensus 245 ~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr~~~~~Q~vAN~LNALSKw---p~~~~cr~aa~~LA~rL~~~ 321 (2316)
T PRK09169 245 RAQEVALLLNALSKWPDDEACRQAAEALAARLAREPGLRLALDPQGVANALNALSKW---PDTEACRQAAEALAERLAQE 321 (2316)
T ss_pred CHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHhC---CCchHHHHHHHHHHHHHHhC
Confidence 355667788887665544 222222211 12235677777888888887 443322 222222
Q ss_pred C---CCCCcchHHHHHHHHHhcCChhHH----HHHHHHHHhC---CCCCCcchHHHHHHHHcCccchH-------HHHHH
Q 048578 91 I---INPSTFAFNTVIRGYAEAGLGHRG----IQLYTQMIGN---GLDPDSFTYPILLKACGDLRQVK-------GVHSL 153 (519)
Q Consensus 91 ~---~~~~~~~~~~ll~~~~~~g~~~~a----~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~-------~~~~~ 153 (519)
. ..-+.......+.++++-.+-+.+ ..+-..+... .-..++.-....+.++++.++.. .+...
T Consensus 322 ~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~r 401 (2316)
T PRK09169 322 RGLLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLARDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAAR 401 (2316)
T ss_pred hhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 1 124555666778888887766543 2333333221 12356677888999999988722 22222
Q ss_pred HHHhCCC--CCchhHHHHHHHHHHhcCChHHHHHHHhcC----C-------CCchhHHHHHHHHHHHcCChhHH----HH
Q 048578 154 VVKSKDF--NSVIHSLTRLITFYCNFGDVKSAQLLFDQM----T-------EKNVVTWTAMINGHVKQKNYREG----ID 216 (519)
Q Consensus 154 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~-------~~~~~~~~~li~~~~~~~~~~~a----~~ 216 (519)
+....+. ..+..-....++++++.+.-+.+.+....+ . .-+..-....+.++.+.++.+.. ..
T Consensus 402 L~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~ 481 (2316)
T PRK09169 402 LARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALAARLAADARLRNALSAQELANALNALSKWPDEAACRRAAEA 481 (2316)
T ss_pred HHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 2221111 245666777888888887766443333222 1 13455566677788877664432 33
Q ss_pred HHHHHHhC---CCCCCHHHHHHHHHHHhccCChHHHHHHHHHH----HH---cCCCcchhHHHHHHHHHHhcCCHHH---
Q 048578 217 LFRKMRDS---GVEVNELTLVSVLSACANLGASELGKWVHEFV----NK---NCIILNDKLGAALTDMYAKCGYIEE--- 283 (519)
Q Consensus 217 ~~~~m~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~---~~~~~~~~~~~~l~~~~~~~g~~~~--- 283 (519)
+...+... .-..+..-+...+.++++-++.+.....-..+ .. .--..++.-+...+.++.+-.+.+.
T Consensus 482 LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~ 561 (2316)
T PRK09169 482 LAARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRA 561 (2316)
T ss_pred HHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHH
Confidence 33333221 11345667888999999988877654433332 22 1124577778888888988776433
Q ss_pred -HHHHHhhcCC-------CChhhHHHHHHHHHHcCChHH----HHHHHHHHHHC-C--CCCCHHHHHHHHHHHhccCcHH
Q 048578 284 -ALRVFKIVLE-------KNVCTWNSIIGGLAIHGCGEE----AVKMFWQMQMS-G--IKPDDVTLIAVLTACSHAGLIE 348 (519)
Q Consensus 284 -a~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~----a~~~~~~m~~~-g--~~p~~~~~~~l~~~~~~~g~~~ 348 (519)
|..+...+.. -+.......+.++.+-++-.. +..+...+.+. + -..|..-+...+.++++-.+.+
T Consensus 562 AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~ 641 (2316)
T PRK09169 562 AAEALAARLARRPDLRSALNAQGLANLLNALSKWPDEDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDED 641 (2316)
T ss_pred HHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCch
Confidence 2333333322 256667778888888776433 33344443322 1 1345667788888999888776
Q ss_pred HHHHHHHHcHHhcC------CCCChhHHHHHHHHHHhcCChHHHHHHHHhC----C------CCCCHHHHHHHHHHHccc
Q 048578 349 KGKEIFYNMRRDYK------VEPNVKHYGCLVDLLCRARLLDEAYEVIRNM----P------MEPNAVLWGSLLTACASA 412 (519)
Q Consensus 349 ~a~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~------~~p~~~~~~~ll~~~~~~ 412 (519)
........+..... -.-+...+..++.++.+..+.+.+.+....+ . -.-|.......++++.+-
T Consensus 642 ~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~~~~c~~Aa~aLA~rl~~~~~~~~~f~aq~lAn~LnAlsKw 721 (2316)
T PRK09169 642 DCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPDEAACRAAALALAERLAREAGLRQAFDAQGVANALNALSKW 721 (2316)
T ss_pred hHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcchhhhhhcCHHHHHHHHHHHHhc
Confidence 65544444333111 1134556677888999888866544333222 1 123555666777777762
Q ss_pred cCCCCHHHHHH-HHHHHHh----hCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 413 DDGANVELAEI-AMERLIK----LEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 413 ~~~~~~~~a~~-~~~~~~~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
.+.+....|.. +..++.+ ..--++.-....++++.+--+-..+.+.+-.+..
T Consensus 722 p~~~acr~A~~~LA~rL~~~~~l~~a~~aQ~lAnsLNaLsKwp~~~~c~~a~~~La~ 778 (2316)
T PRK09169 722 PEEEACRAAAEALAGRLAADADLRQAMNPQGLANSLNALSKWPQEPACQQAALLLAE 778 (2316)
T ss_pred cCccHHHHHHHHHHHHHhcChHHHhhcCHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 22333333322 2222222 1122667777888888888777777776555543
No 498
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=28.06 E-value=4.3e+02 Score=23.43 Aligned_cols=58 Identities=10% Similarity=0.154 Sum_probs=34.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-cCChHHHHHHHHHHH
Q 048578 200 AMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACAN-LGASELGKWVHEFVN 257 (519)
Q Consensus 200 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~ 257 (519)
.+++.+-+.|+++++...++++...+...+..--+.+-.+|-+ .|....+.+++..+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 3566677888888888888888887766666666655555532 233333444444433
No 499
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=27.78 E-value=6.3e+02 Score=25.29 Aligned_cols=241 Identities=7% Similarity=-0.014 Sum_probs=133.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC------hHHHHHHHHHHHHcC--CCcchhHHHHHHHHHHhcCCHH-H
Q 048578 213 EGIDLFRKMRDSGVEVNELTLVSVLSACANLGA------SELGKWVHEFVNKNC--IILNDKLGAALTDMYAKCGYIE-E 283 (519)
Q Consensus 213 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~------~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~-~ 283 (519)
....+|++..+. -|+...+...|..|...-. +.....+++.....+ .+.....|..+.-.+....... -
T Consensus 300 ~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 300 RCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 344666666553 4566677777777654432 233333444444332 2334556666666666655443 3
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHc-CChHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-HHH--HHHHHHHcH
Q 048578 284 ALRVFKIVLEKNVCTWNSIIGGLAIH-GCGEEA-VKMFWQMQMSGIKPDDVTLIAVLTACSHAGL-IEK--GKEIFYNMR 358 (519)
Q Consensus 284 a~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a-~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-~~~--a~~~~~~~~ 358 (519)
|..+..+....+...|-.-+....+. .++.-- .+.+......-..+-...++... .|+ .+. -..++..+.
T Consensus 378 a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~ 452 (568)
T KOG2396|consen 378 AVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALL 452 (568)
T ss_pred HHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHH
Confidence 44444455566666666555544422 122211 12222333221222233333333 122 111 122333333
Q ss_pred HhcCCCCChhHH-HHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC
Q 048578 359 RDYKVEPNVKHY-GCLVDLLCRARLLDEAYEVIRNM-PM-EPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN 435 (519)
Q Consensus 359 ~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (519)
. -..|+..++ +.+++-+.+.|-..+|...+... .. +|+...|..+++.-.... +-+..-+..+++.+...-..+
T Consensus 453 s--~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~-sc~l~~~r~~yd~a~~~fg~d 529 (568)
T KOG2396|consen 453 S--VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQE-SCNLANIREYYDRALREFGAD 529 (568)
T ss_pred H--hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHh-hcCchHHHHHHHHHHHHhCCC
Confidence 3 223444443 46778888899999999999888 33 347778888887633221 334778888898888654477
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 436 DGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
+..|......-...|..+.+-.++.+..
T Consensus 530 ~~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 530 SDLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred hHHHHHHHHhhccCCCcccccHHHHHHH
Confidence 8899988888888898888887766553
No 500
>PF06135 DUF965: Bacterial protein of unknown function (DUF965); InterPro: IPR009309 This family consists of several hypothetical bacterial proteins. The function of the family is unknown.
Probab=27.58 E-value=1e+02 Score=21.55 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.3
Q ss_pred CChhHHHHHHHHHHHHHHhcccCCC
Q 048578 493 PCSEEIYSMLEYVAISLREECYAAR 517 (519)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~p~ 517 (519)
.+...+.+++..+...+++.||.|-
T Consensus 12 ~~~~~~~~iL~~Vy~AL~EKGYnPi 36 (79)
T PF06135_consen 12 EKEKEIREILKQVYAALEEKGYNPI 36 (79)
T ss_pred cchhhHHHHHHHHHHHHHHcCCChH
Confidence 3456888999999999999999983
Done!