Query 048578
Match_columns 519
No_of_seqs 536 out of 3561
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 18:53:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048578.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048578hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 6E-37 2.1E-41 313.3 35.3 427 28-467 82-581 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.1E-33 3.7E-38 289.1 38.0 409 26-447 113-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2.7E-26 9.2E-31 221.3 40.0 350 70-464 7-367 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 8.8E-26 3E-30 217.6 41.5 367 39-451 11-388 (388)
5 4g26_A Pentatricopeptide repea 100.0 3E-28 1E-32 239.1 23.1 183 196-379 27-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 2E-27 6.7E-32 233.3 23.4 199 212-411 7-222 (501)
7 2gw1_A Mitochondrial precursor 99.9 1.9E-22 6.6E-27 201.7 31.9 395 64-467 8-480 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 3.8E-22 1.3E-26 196.2 33.1 326 95-462 25-406 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 6.7E-22 2.3E-26 194.4 32.1 299 161-467 23-360 (450)
10 2gw1_A Mitochondrial precursor 99.9 1.2E-21 4E-26 196.1 33.3 391 39-442 18-489 (514)
11 3fp2_A TPR repeat-containing p 99.9 7.9E-21 2.7E-25 191.2 33.3 410 41-467 39-493 (537)
12 3ieg_A DNAJ homolog subfamily 99.9 1.3E-19 4.3E-24 172.2 32.9 296 163-466 2-336 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 1.6E-19 5.4E-24 171.5 31.5 314 95-449 2-353 (359)
14 3hym_B Cell division cycle pro 99.8 1.9E-18 6.6E-23 162.0 28.4 287 160-452 18-321 (330)
15 3hym_B Cell division cycle pro 99.8 2.5E-18 8.6E-23 161.2 27.5 266 193-466 20-300 (330)
16 3fp2_A TPR repeat-containing p 99.8 1.9E-17 6.4E-22 166.5 34.7 412 8-440 42-500 (537)
17 1fch_A Peroxisomal targeting s 99.8 1.1E-18 3.9E-23 166.4 23.7 281 174-461 35-355 (368)
18 1b89_A Protein (clathrin heavy 99.8 3.8E-18 1.3E-22 159.8 20.6 344 79-461 17-368 (449)
19 2ooe_A Cleavage stimulation fa 99.8 1.8E-15 6.2E-20 151.6 41.0 395 59-467 10-494 (530)
20 2xm6_A Protein corresponding t 99.8 5.4E-16 1.8E-20 153.8 36.5 373 59-448 36-452 (490)
21 4eqf_A PEX5-related protein; a 99.8 6.3E-18 2.1E-22 161.1 20.2 259 196-461 66-352 (365)
22 3mkr_A Coatomer subunit epsilo 99.8 1.3E-16 4.5E-21 146.1 27.8 270 172-458 7-287 (291)
23 4g1t_A Interferon-induced prot 99.8 8.3E-17 2.8E-21 159.0 27.1 369 60-475 49-469 (472)
24 1fch_A Peroxisomal targeting s 99.8 6.9E-17 2.4E-21 154.0 25.5 278 79-392 39-355 (368)
25 3cv0_A Peroxisome targeting si 99.8 2.3E-17 7.9E-22 154.4 21.6 257 198-462 24-312 (327)
26 2xm6_A Protein corresponding t 99.8 1E-14 3.4E-19 144.7 39.5 356 93-467 36-434 (490)
27 1xi4_A Clathrin heavy chain; a 99.8 1.1E-14 3.8E-19 151.9 40.1 385 28-458 951-1377(1630)
28 3mkr_A Coatomer subunit epsilo 99.8 1.2E-16 4.3E-21 146.3 22.7 249 202-468 6-267 (291)
29 1b89_A Protein (clathrin heavy 99.7 1.9E-18 6.5E-23 161.8 9.3 250 176-459 15-266 (449)
30 4eqf_A PEX5-related protein; a 99.7 2.1E-16 7.1E-21 150.6 21.8 233 229-467 64-312 (365)
31 2ooe_A Cleavage stimulation fa 99.7 1.8E-14 6.1E-19 144.4 34.9 401 94-509 11-493 (530)
32 3cv0_A Peroxisome targeting si 99.7 2.8E-16 9.5E-21 147.0 19.6 262 163-432 20-316 (327)
33 1xi4_A Clathrin heavy chain; a 99.7 1.2E-13 4E-18 144.4 37.9 401 7-460 1001-1440(1630)
34 3uq3_A Heat shock protein STI1 99.7 4.8E-15 1.6E-19 133.4 22.0 230 196-466 6-237 (258)
35 2pl2_A Hypothetical conserved 99.7 2.4E-15 8.3E-20 131.6 18.6 196 262-463 2-212 (217)
36 3uq3_A Heat shock protein STI1 99.7 3.1E-15 1E-19 134.7 19.8 234 164-443 5-254 (258)
37 3spa_A Mtrpol, DNA-directed RN 99.7 3.7E-16 1.3E-20 158.0 12.3 114 297-411 128-248 (1134)
38 3spa_A Mtrpol, DNA-directed RN 99.6 1.7E-16 5.8E-21 160.4 8.9 123 162-284 125-255 (1134)
39 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.1E-14 7.1E-19 130.6 20.7 241 207-459 17-269 (275)
40 3u4t_A TPR repeat-containing p 99.6 3.3E-14 1.1E-18 129.1 21.2 242 202-450 10-269 (272)
41 2pl2_A Hypothetical conserved 99.6 1.2E-13 4.2E-18 120.7 19.9 192 196-393 6-211 (217)
42 2ho1_A Type 4 fimbrial biogene 99.6 7E-13 2.4E-17 118.8 25.1 207 195-439 37-246 (252)
43 4g1t_A Interferon-induced prot 99.6 2.6E-12 9E-17 126.7 30.6 308 95-436 50-406 (472)
44 3u4t_A TPR repeat-containing p 99.6 4.2E-13 1.4E-17 121.8 23.0 239 165-405 4-261 (272)
45 2h6f_A Protein farnesyltransfe 99.6 1.7E-13 5.8E-18 129.8 20.6 250 195-449 97-366 (382)
46 2q7f_A YRRB protein; TPR, prot 99.6 8.6E-14 2.9E-18 124.0 17.2 142 297-444 92-235 (243)
47 2vq2_A PILW, putative fimbrial 99.6 5.9E-13 2E-17 116.8 22.3 195 265-464 8-210 (225)
48 2h6f_A Protein farnesyltransfe 99.6 1.6E-13 5.3E-18 130.0 19.6 229 230-466 97-349 (382)
49 4a1s_A PINS, partner of inscut 99.6 4.1E-14 1.4E-18 136.9 15.9 262 200-465 53-372 (411)
50 2q7f_A YRRB protein; TPR, prot 99.6 7.3E-14 2.5E-18 124.4 16.3 198 264-467 22-224 (243)
51 2ho1_A Type 4 fimbrial biogene 99.6 8.9E-13 3E-17 118.1 23.5 194 164-359 37-237 (252)
52 2vq2_A PILW, putative fimbrial 99.6 1.3E-12 4.3E-17 114.7 24.0 209 195-441 8-221 (225)
53 3e4b_A ALGK; tetratricopeptide 99.6 1.7E-13 5.7E-18 133.9 19.4 371 41-465 17-421 (452)
54 3sf4_A G-protein-signaling mod 99.5 2.1E-13 7.2E-18 131.5 18.9 269 163-434 8-339 (406)
55 3ro2_A PINS homolog, G-protein 99.5 8.8E-14 3E-18 130.2 15.5 263 200-466 10-333 (338)
56 1ouv_A Conserved hypothetical 99.5 6.2E-12 2.1E-16 114.2 26.8 231 194-467 5-253 (273)
57 1ouv_A Conserved hypothetical 99.5 6.6E-12 2.2E-16 114.0 26.8 218 162-392 4-247 (273)
58 3vtx_A MAMA; tetratricopeptide 99.5 1.1E-12 3.8E-17 111.3 19.7 167 295-467 4-172 (184)
59 3e4b_A ALGK; tetratricopeptide 99.5 1.5E-11 5.2E-16 120.0 29.1 332 45-430 56-420 (452)
60 3sf4_A G-protein-signaling mod 99.5 1.6E-13 5.5E-18 132.3 14.5 267 194-464 8-335 (406)
61 4abn_A Tetratricopeptide repea 99.5 1.6E-13 5.6E-18 134.8 14.7 193 263-462 100-318 (474)
62 1xnf_A Lipoprotein NLPI; TPR, 99.5 4.8E-13 1.6E-17 121.5 16.2 218 241-466 16-245 (275)
63 3ulq_A Response regulator aspa 99.5 2.3E-12 7.9E-17 123.3 18.8 285 174-464 22-367 (383)
64 4a1s_A PINS, partner of inscut 99.5 9.9E-13 3.4E-17 127.2 16.0 268 164-434 48-375 (411)
65 2ond_A Cleavage stimulation fa 99.4 4.4E-11 1.5E-15 110.6 25.5 218 212-436 33-275 (308)
66 3ro2_A PINS homolog, G-protein 99.4 3.6E-12 1.2E-16 119.1 17.9 273 100-433 9-334 (338)
67 3nf1_A KLC 1, kinesin light ch 99.4 2.8E-13 9.7E-18 125.4 10.0 242 195-464 27-306 (311)
68 3vtx_A MAMA; tetratricopeptide 99.4 4.8E-12 1.6E-16 107.4 15.9 166 264-435 4-174 (184)
69 3ulq_A Response regulator aspa 99.4 2.3E-11 8E-16 116.3 22.6 229 201-432 109-369 (383)
70 4gyw_A UDP-N-acetylglucosamine 99.4 7.4E-12 2.5E-16 128.0 17.9 162 296-464 9-173 (723)
71 1hz4_A MALT regulatory protein 99.4 4E-10 1.4E-14 107.2 28.3 261 202-465 21-322 (373)
72 3as5_A MAMA; tetratricopeptide 99.4 2E-11 6.9E-16 103.3 17.2 162 299-466 11-174 (186)
73 2ond_A Cleavage stimulation fa 99.4 1.1E-10 3.8E-15 107.8 23.6 214 247-468 33-273 (308)
74 3q15_A PSP28, response regulat 99.4 4.7E-11 1.6E-15 113.9 21.2 300 161-464 7-364 (378)
75 3nf1_A KLC 1, kinesin light ch 99.4 2.4E-12 8.4E-17 119.0 11.2 238 163-434 26-310 (311)
76 4e6h_A MRNA 3'-END-processing 99.4 8.7E-09 3E-13 104.2 37.0 413 47-468 52-573 (679)
77 4i17_A Hypothetical protein; T 99.3 8.2E-11 2.8E-15 103.5 18.1 205 228-446 5-224 (228)
78 3as5_A MAMA; tetratricopeptide 99.3 2E-10 7E-15 97.0 18.9 168 265-438 8-180 (186)
79 4abn_A Tetratricopeptide repea 99.3 7.3E-11 2.5E-15 115.9 18.3 206 211-424 84-314 (474)
80 4e6h_A MRNA 3'-END-processing 99.3 2.5E-08 8.7E-13 100.8 36.6 396 29-436 65-575 (679)
81 4i17_A Hypothetical protein; T 99.3 8.8E-11 3E-15 103.3 16.1 190 263-466 5-210 (228)
82 3q15_A PSP28, response regulat 99.3 1.3E-09 4.4E-14 103.9 24.5 227 201-431 107-365 (378)
83 1hz4_A MALT regulatory protein 99.2 1.6E-09 5.3E-14 103.1 23.0 263 167-433 17-324 (373)
84 3edt_B KLC 2, kinesin light ch 99.2 6.7E-11 2.3E-15 107.5 12.1 167 298-464 87-280 (283)
85 1qqe_A Vesicular transport pro 99.2 4.9E-10 1.7E-14 102.6 16.5 226 179-442 32-280 (292)
86 3mv2_B Coatomer subunit epsilo 99.2 5E-09 1.7E-13 94.1 21.2 138 249-392 85-236 (310)
87 4gyw_A UDP-N-acetylglucosamine 99.2 2.9E-10 9.8E-15 116.4 14.9 164 262-432 6-175 (723)
88 3qky_A Outer membrane assembly 99.1 6E-09 2E-13 93.6 19.8 184 264-467 14-226 (261)
89 2fo7_A Synthetic consensus TPR 99.1 1.8E-09 6.1E-14 85.6 14.5 127 334-465 4-132 (136)
90 3qky_A Outer membrane assembly 99.1 1.2E-09 4.1E-14 98.2 14.2 205 228-454 13-250 (261)
91 3edt_B KLC 2, kinesin light ch 99.1 3.3E-09 1.1E-13 96.2 16.9 202 196-431 44-281 (283)
92 2yhc_A BAMD, UPF0169 lipoprote 99.1 5.4E-09 1.9E-13 91.5 17.6 182 266-469 5-217 (225)
93 1qqe_A Vesicular transport pro 99.1 6.1E-10 2.1E-14 102.0 11.8 200 245-462 32-266 (292)
94 2pzi_A Probable serine/threoni 99.1 4.9E-10 1.7E-14 115.1 11.1 166 241-411 402-580 (681)
95 3mv2_B Coatomer subunit epsilo 99.1 2.4E-08 8.4E-13 89.7 20.4 175 284-466 85-283 (310)
96 4ga2_A E3 SUMO-protein ligase 99.0 1.3E-10 4.4E-15 94.7 5.1 140 305-451 6-149 (150)
97 3qou_A Protein YBBN; thioredox 99.0 4.5E-09 1.5E-13 95.8 15.8 175 282-463 103-282 (287)
98 2fo7_A Synthetic consensus TPR 99.0 9E-09 3.1E-13 81.5 15.8 131 298-434 3-135 (136)
99 2vsy_A XCC0866; transferase, g 99.0 6.5E-09 2.2E-13 104.8 14.8 163 278-443 2-169 (568)
100 4ga2_A E3 SUMO-protein ligase 99.0 9.6E-10 3.3E-14 89.4 7.1 124 337-465 3-129 (150)
101 2r5s_A Uncharacterized protein 99.0 6.5E-09 2.2E-13 87.1 12.4 159 299-464 9-172 (176)
102 3rjv_A Putative SEL1 repeat pr 98.9 7.8E-08 2.7E-12 83.2 19.0 176 284-468 5-200 (212)
103 2pzi_A Probable serine/threoni 98.9 3.9E-08 1.3E-12 101.0 19.6 150 206-359 402-562 (681)
104 3urz_A Uncharacterized protein 98.9 1.7E-08 5.8E-13 87.1 14.2 129 300-434 58-189 (208)
105 2ifu_A Gamma-SNAP; membrane fu 98.9 1.8E-08 6.1E-13 92.9 14.8 219 208-458 4-254 (307)
106 2vsy_A XCC0866; transferase, g 98.9 4.4E-08 1.5E-12 98.8 18.0 147 243-393 2-154 (568)
107 3urz_A Uncharacterized protein 98.9 8.8E-08 3E-12 82.6 17.5 184 197-405 6-196 (208)
108 3gyz_A Chaperone protein IPGC; 98.9 8.5E-09 2.9E-13 83.4 9.6 99 366-467 35-135 (151)
109 4gco_A Protein STI-1; structur 98.9 1.7E-08 5.7E-13 79.2 10.7 108 333-445 15-124 (126)
110 2r5s_A Uncharacterized protein 98.9 9.1E-08 3.1E-12 80.0 15.8 156 165-323 7-171 (176)
111 3qou_A Protein YBBN; thioredox 98.9 1.7E-07 5.6E-12 85.4 18.7 162 229-392 116-280 (287)
112 3dra_A Protein farnesyltransfe 98.8 3.2E-07 1.1E-11 83.3 20.0 226 207-440 44-297 (306)
113 2yhc_A BAMD, UPF0169 lipoprote 98.8 5.7E-08 1.9E-12 85.0 14.6 185 229-437 3-219 (225)
114 1hh8_A P67PHOX, NCF-2, neutrop 98.8 1.5E-07 5.3E-12 81.3 16.6 142 269-435 10-154 (213)
115 1hh8_A P67PHOX, NCF-2, neutrop 98.8 1E-07 3.5E-12 82.4 15.4 127 333-467 8-152 (213)
116 2ifu_A Gamma-SNAP; membrane fu 98.8 2.2E-08 7.4E-13 92.3 10.9 196 242-463 3-222 (307)
117 3u3w_A Transcriptional activat 98.8 7.5E-07 2.6E-11 81.3 20.9 160 302-464 81-265 (293)
118 1a17_A Serine/threonine protei 98.8 1E-07 3.5E-12 78.6 13.3 127 333-464 15-145 (166)
119 2vgx_A Chaperone SYCD; alterna 98.8 1.8E-08 6E-13 81.6 8.1 98 366-466 20-119 (148)
120 3dra_A Protein farnesyltransfe 98.8 5.7E-06 2E-10 75.0 25.4 213 245-464 48-286 (306)
121 4gco_A Protein STI-1; structur 98.8 5.2E-08 1.8E-12 76.3 10.5 101 363-466 8-111 (126)
122 2qfc_A PLCR protein; TPR, HTH, 98.8 2.7E-07 9.3E-12 84.3 16.9 164 298-464 77-265 (293)
123 3rjv_A Putative SEL1 repeat pr 98.8 6.8E-07 2.3E-11 77.2 18.5 168 183-359 5-196 (212)
124 2vyi_A SGTA protein; chaperone 98.7 1.9E-07 6.5E-12 73.2 12.4 118 331-453 12-131 (131)
125 1na0_A Designed protein CTPR3; 98.7 2.7E-07 9.2E-12 71.6 13.0 115 331-450 9-125 (125)
126 2uy1_A Cleavage stimulation fa 98.7 5.7E-06 2E-10 81.1 25.1 121 333-463 288-411 (493)
127 2lni_A Stress-induced-phosphop 98.7 2.1E-07 7.2E-12 73.3 11.9 115 332-451 17-133 (133)
128 2uy1_A Cleavage stimulation fa 98.7 9.6E-05 3.3E-09 72.4 32.5 203 212-430 196-412 (493)
129 1p5q_A FKBP52, FK506-binding p 98.7 1.5E-07 5.1E-12 87.7 11.8 126 333-463 149-292 (336)
130 2xcb_A PCRH, regulatory protei 98.7 1.1E-07 3.8E-12 76.3 9.5 98 366-466 17-116 (142)
131 2c2l_A CHIP, carboxy terminus 98.6 5.6E-08 1.9E-12 88.2 8.4 189 265-465 4-199 (281)
132 2e2e_A Formate-dependent nitri 98.6 7.8E-08 2.7E-12 80.5 8.5 121 342-467 21-146 (177)
133 3u3w_A Transcriptional activat 98.6 6.6E-06 2.2E-10 75.0 21.7 158 271-431 81-266 (293)
134 2vgx_A Chaperone SYCD; alterna 98.6 6.6E-08 2.3E-12 78.2 7.2 104 332-440 22-127 (148)
135 2qfc_A PLCR protein; TPR, HTH, 98.6 1.7E-06 5.7E-11 79.0 17.3 162 267-431 77-266 (293)
136 3upv_A Heat shock protein STI1 98.6 2.5E-07 8.5E-12 72.4 10.0 97 367-466 4-102 (126)
137 3gyz_A Chaperone protein IPGC; 98.6 4.8E-07 1.7E-11 73.0 11.3 104 327-435 31-137 (151)
138 2kck_A TPR repeat; tetratricop 98.5 4.3E-07 1.5E-11 68.9 9.8 100 366-468 5-109 (112)
139 1hxi_A PEX5, peroxisome target 98.5 2.6E-07 8.7E-12 71.7 8.2 96 369-467 19-116 (121)
140 2lni_A Stress-induced-phosphop 98.5 1.1E-06 3.9E-11 69.0 12.0 100 364-466 13-114 (133)
141 4f3v_A ESX-1 secretion system 98.5 1.1E-06 3.7E-11 77.9 12.9 124 336-465 107-237 (282)
142 3sz7_A HSC70 cochaperone (SGT) 98.5 5.1E-07 1.7E-11 74.4 10.0 110 330-444 10-121 (164)
143 4gcn_A Protein STI-1; structur 98.5 4.2E-07 1.4E-11 71.2 8.9 94 368-464 9-111 (127)
144 3gw4_A Uncharacterized protein 98.5 1.1E-06 3.8E-11 75.0 12.3 132 297-431 27-176 (203)
145 4f3v_A ESX-1 secretion system 98.5 3E-06 1E-10 75.1 15.1 135 300-442 106-247 (282)
146 3upv_A Heat shock protein STI1 98.5 8.6E-07 2.9E-11 69.2 10.5 111 332-447 5-123 (126)
147 1elw_A TPR1-domain of HOP; HOP 98.5 1.8E-06 6E-11 66.1 12.2 108 333-445 6-115 (118)
148 2e2e_A Formate-dependent nitri 98.5 1.1E-06 3.7E-11 73.4 11.7 127 307-439 21-152 (177)
149 2fbn_A 70 kDa peptidylprolyl i 98.5 8.5E-07 2.9E-11 75.6 11.1 96 368-466 89-187 (198)
150 3q49_B STIP1 homology and U bo 98.5 1.5E-06 5E-11 69.0 11.6 99 365-466 7-107 (137)
151 3sz7_A HSC70 cochaperone (SGT) 98.5 1.4E-06 4.6E-11 71.8 11.8 95 296-393 11-105 (164)
152 2xcb_A PCRH, regulatory protei 98.5 5.9E-07 2E-11 71.9 9.3 105 333-442 20-126 (142)
153 2c2l_A CHIP, carboxy terminus 98.5 6.4E-07 2.2E-11 81.2 10.6 92 166-258 6-100 (281)
154 3gw4_A Uncharacterized protein 98.5 1.8E-06 6.2E-11 73.7 13.0 84 175-258 3-94 (203)
155 3q7a_A Farnesyltransferase alp 98.5 0.00013 4.4E-09 67.0 25.4 173 206-383 65-258 (349)
156 3q7a_A Farnesyltransferase alp 98.5 1.2E-05 4E-10 73.8 18.3 219 242-464 66-330 (349)
157 2dba_A Smooth muscle cell asso 98.5 1.8E-06 6.2E-11 69.3 11.7 95 367-464 28-127 (148)
158 1a17_A Serine/threonine protei 98.5 2.6E-06 9E-11 69.9 13.0 127 298-430 15-145 (166)
159 1na0_A Designed protein CTPR3; 98.5 1.5E-06 5.1E-11 67.3 10.8 97 367-466 9-107 (125)
160 1elw_A TPR1-domain of HOP; HOP 98.4 1.9E-06 6.4E-11 66.0 10.9 99 366-467 3-103 (118)
161 3dss_A Geranylgeranyl transfer 98.4 9.1E-05 3.1E-09 67.6 22.5 197 246-446 90-319 (331)
162 3q49_B STIP1 homology and U bo 98.4 2.1E-06 7.3E-11 68.0 9.9 113 329-446 7-126 (137)
163 2vyi_A SGTA protein; chaperone 98.4 2.3E-06 8E-11 66.8 10.0 99 365-466 10-110 (131)
164 1wao_1 Serine/threonine protei 98.3 1.1E-06 3.7E-11 86.0 8.9 120 337-461 12-135 (477)
165 2dba_A Smooth muscle cell asso 98.3 7.4E-06 2.5E-10 65.6 12.4 112 330-447 27-144 (148)
166 2hr2_A Hypothetical protein; a 98.3 2.2E-06 7.6E-11 68.5 8.8 93 371-466 15-132 (159)
167 2kck_A TPR repeat; tetratricop 98.3 3.6E-06 1.2E-10 63.6 9.7 99 333-436 8-111 (112)
168 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 5.4E-06 1.9E-10 80.7 13.1 129 333-464 270-414 (457)
169 1elr_A TPR2A-domain of HOP; HO 98.3 2.2E-06 7.4E-11 67.0 8.5 109 333-447 6-123 (131)
170 2xev_A YBGF; tetratricopeptide 98.3 2.4E-06 8.2E-11 66.8 8.7 89 373-464 8-104 (129)
171 4b4t_Q 26S proteasome regulato 98.3 1.6E-05 5.4E-10 76.9 16.1 162 299-463 58-243 (434)
172 4gcn_A Protein STI-1; structur 98.3 3E-06 1E-10 66.2 8.7 96 334-434 11-115 (127)
173 3dss_A Geranylgeranyl transfer 98.3 0.00015 5.2E-09 66.1 20.9 184 281-467 90-306 (331)
174 2xev_A YBGF; tetratricopeptide 98.3 1.1E-05 3.8E-10 62.9 11.8 104 336-444 7-118 (129)
175 4b4t_Q 26S proteasome regulato 98.2 0.00024 8.2E-09 68.5 23.4 189 171-359 11-244 (434)
176 2fbn_A 70 kDa peptidylprolyl i 98.2 5.3E-06 1.8E-10 70.6 9.8 117 172-289 12-146 (198)
177 1p5q_A FKBP52, FK506-binding p 98.2 2E-05 6.7E-10 73.3 14.2 151 178-350 127-283 (336)
178 1hxi_A PEX5, peroxisome target 98.2 4E-06 1.4E-10 64.9 8.0 93 337-434 23-117 (121)
179 1elr_A TPR2A-domain of HOP; HO 98.2 3.2E-06 1.1E-10 66.0 7.6 96 367-465 4-108 (131)
180 1ihg_A Cyclophilin 40; ppiase 98.2 7.3E-06 2.5E-10 77.2 11.0 90 366-458 272-363 (370)
181 2if4_A ATFKBP42; FKBP-like, al 98.2 2.7E-06 9.1E-11 79.3 7.8 148 297-467 180-330 (338)
182 3ro3_A PINS homolog, G-protein 98.2 4.4E-06 1.5E-10 68.0 8.3 129 333-464 11-157 (164)
183 3rkv_A Putative peptidylprolyl 98.2 3.8E-06 1.3E-10 68.9 7.7 77 367-446 63-142 (162)
184 3rkv_A Putative peptidylprolyl 98.2 4.6E-06 1.6E-10 68.4 8.2 65 399-466 63-127 (162)
185 3k9i_A BH0479 protein; putativ 98.2 1.6E-06 5.5E-11 66.7 4.8 82 380-464 3-89 (117)
186 1dce_A Protein (RAB geranylger 98.2 7.5E-05 2.6E-09 74.4 17.9 171 281-454 45-244 (567)
187 1wao_1 Serine/threonine protei 98.2 1.7E-05 5.8E-10 77.5 13.1 117 272-391 13-134 (477)
188 3k9i_A BH0479 protein; putativ 98.1 2.4E-06 8.1E-11 65.7 4.4 92 344-439 3-98 (117)
189 2if4_A ATFKBP42; FKBP-like, al 98.0 1.1E-05 3.8E-10 75.1 8.8 153 265-436 179-333 (338)
190 3n71_A Histone lysine methyltr 98.0 3.9E-05 1.3E-09 74.6 12.0 125 340-467 318-466 (490)
191 2hr2_A Hypothetical protein; a 98.0 1.6E-05 5.6E-10 63.5 7.8 107 334-443 14-143 (159)
192 3ro3_A PINS homolog, G-protein 98.0 2.3E-05 7.8E-10 63.6 8.7 97 333-432 51-159 (164)
193 2l6j_A TPR repeat-containing p 98.0 3.5E-06 1.2E-10 63.8 3.0 93 366-461 3-103 (111)
194 2kat_A Uncharacterized protein 97.9 3.6E-05 1.2E-09 58.7 7.6 78 385-465 3-82 (115)
195 3ma5_A Tetratricopeptide repea 97.9 6.3E-05 2.2E-09 55.7 8.7 65 398-465 6-70 (100)
196 1na3_A Designed protein CTPR2; 97.8 7.8E-05 2.7E-09 53.7 8.5 81 367-450 9-91 (91)
197 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 4.6E-05 1.6E-09 74.1 9.3 118 345-467 248-382 (457)
198 1ihg_A Cyclophilin 40; ppiase 97.8 0.00014 4.9E-09 68.3 11.8 89 296-387 273-361 (370)
199 3bee_A Putative YFRE protein; 97.7 0.00019 6.5E-09 52.0 8.7 72 397-468 4-75 (93)
200 1zu2_A Mitochondrial import re 97.7 1.4E-05 4.9E-10 63.7 2.6 50 418-467 62-122 (158)
201 1dce_A Protein (RAB geranylger 97.6 0.00061 2.1E-08 67.8 14.0 151 310-467 43-223 (567)
202 2l6j_A TPR repeat-containing p 97.6 0.0002 7E-09 53.7 8.1 67 398-467 3-69 (111)
203 3n71_A Histone lysine methyltr 97.5 0.00062 2.1E-08 66.1 12.0 62 298-359 395-463 (490)
204 1zu2_A Mitochondrial import re 97.4 9.4E-05 3.2E-09 59.0 4.1 89 346-436 17-125 (158)
205 1na3_A Designed protein CTPR2; 97.4 0.00047 1.6E-08 49.4 7.3 65 399-466 9-73 (91)
206 1qsa_A Protein (soluble lytic 97.4 0.076 2.6E-06 52.9 25.1 308 107-430 17-347 (618)
207 1wy6_A Hypothetical protein ST 97.3 0.019 6.4E-07 43.4 14.8 141 306-468 17-157 (172)
208 1klx_A Cysteine rich protein B 97.3 0.0044 1.5E-07 48.7 12.4 62 295-359 56-125 (138)
209 2kat_A Uncharacterized protein 97.3 0.00085 2.9E-08 50.8 7.7 65 366-433 18-84 (115)
210 1klx_A Cysteine rich protein B 97.2 0.0045 1.5E-07 48.6 11.6 110 209-326 9-127 (138)
211 3ly7_A Transcriptional activat 97.2 0.0091 3.1E-07 54.7 14.7 136 294-434 192-342 (372)
212 3ma5_A Tetratricopeptide repea 97.2 0.0012 4.1E-08 48.5 7.6 63 296-359 7-69 (100)
213 3qww_A SET and MYND domain-con 97.0 0.00078 2.7E-08 64.3 6.2 82 380-464 311-410 (433)
214 2kc7_A BFR218_protein; tetratr 97.0 0.0012 4.2E-08 48.2 6.0 64 373-439 6-72 (99)
215 3mkq_A Coatomer beta'-subunit; 97.0 0.051 1.7E-06 56.9 20.6 113 174-321 662-774 (814)
216 3lvg_A Clathrin heavy chain 1; 97.0 4.2E-05 1.4E-09 71.4 -3.0 239 60-317 52-325 (624)
217 3qww_A SET and MYND domain-con 96.9 0.0038 1.3E-07 59.6 9.4 92 344-438 311-423 (433)
218 1pc2_A Mitochondria fission pr 96.8 0.0054 1.9E-07 48.3 8.4 86 345-435 12-104 (152)
219 2kc7_A BFR218_protein; tetratr 96.8 0.0062 2.1E-07 44.3 8.5 86 337-435 6-94 (99)
220 3qwp_A SET and MYND domain-con 96.8 0.0026 8.9E-08 60.8 7.8 116 374-510 294-427 (429)
221 3qwp_A SET and MYND domain-con 96.8 0.0075 2.6E-07 57.6 10.6 99 338-439 294-413 (429)
222 3mkq_A Coatomer beta'-subunit; 96.7 0.095 3.2E-06 54.8 20.0 129 234-392 633-761 (814)
223 3u64_A Protein TP_0956; tetrat 96.5 0.0086 2.9E-07 52.6 8.4 90 383-472 179-276 (301)
224 3ly7_A Transcriptional activat 96.4 0.02 7E-07 52.4 10.3 135 328-469 191-343 (372)
225 2v5f_A Prolyl 4-hydroxylase su 96.3 0.027 9.3E-07 41.5 9.1 73 368-443 6-87 (104)
226 3mkq_B Coatomer subunit alpha; 96.2 0.39 1.3E-05 38.8 15.8 102 173-291 14-115 (177)
227 3mkq_B Coatomer subunit alpha; 96.2 0.18 6.2E-06 40.7 13.6 128 274-428 14-141 (177)
228 3bee_A Putative YFRE protein; 96.1 0.038 1.3E-06 39.6 8.7 68 364-434 3-75 (93)
229 1pc2_A Mitochondria fission pr 95.9 0.057 1.9E-06 42.5 9.2 86 312-400 14-105 (152)
230 1wy6_A Hypothetical protein ST 95.6 0.51 1.7E-05 35.8 14.8 141 205-364 17-157 (172)
231 2v5f_A Prolyl 4-hydroxylase su 95.6 0.045 1.5E-06 40.2 7.5 66 398-466 4-76 (104)
232 4h7y_A Dual specificity protei 95.5 0.025 8.6E-07 43.8 5.7 101 330-435 12-127 (161)
233 1y8m_A FIS1; mitochondria, unk 95.4 0.2 6.8E-06 38.5 10.4 68 397-464 37-105 (144)
234 1nzn_A CGI-135 protein, fissio 95.3 0.07 2.4E-06 40.3 7.5 85 346-435 16-107 (126)
235 3o48_A Mitochondria fission 1 94.6 0.15 5E-06 38.7 7.5 69 396-464 37-106 (134)
236 4h7y_A Dual specificity protei 94.5 0.3 1E-05 37.9 9.1 97 294-393 11-120 (161)
237 3u64_A Protein TP_0956; tetrat 94.5 0.074 2.5E-06 46.7 6.5 83 347-434 179-272 (301)
238 3lvg_A Clathrin heavy chain 1; 93.5 0.061 2.1E-06 50.8 4.4 179 28-220 81-287 (624)
239 1nzn_A CGI-135 protein, fissio 93.3 0.53 1.8E-05 35.5 8.5 90 307-399 12-107 (126)
240 3lpz_A GET4 (YOR164C homolog); 93.0 4.9 0.00017 36.2 19.9 130 65-208 38-180 (336)
241 4gns_B Protein CSD3, chitin bi 93.0 1.1 3.8E-05 45.6 12.9 53 408-463 346-398 (754)
242 2wpv_A GET4, UPF0363 protein Y 93.0 4.8 0.00016 36.0 19.3 130 65-208 36-178 (312)
243 2wpv_A GET4, UPF0363 protein Y 92.3 6 0.00021 35.3 19.3 170 164-359 33-216 (312)
244 4ady_A RPN2, 26S proteasome re 92.1 13 0.00044 38.8 22.8 39 83-124 220-258 (963)
245 2ff4_A Probable regulatory pro 92.1 0.32 1.1E-05 45.6 7.3 69 402-473 174-247 (388)
246 2uwj_G Type III export protein 91.4 2.7 9.4E-05 29.7 9.5 88 244-336 20-107 (115)
247 2p58_C Putative type III secre 91.2 2.9 0.0001 29.6 10.3 88 244-336 21-108 (116)
248 1v54_E Cytochrome C oxidase po 91.2 1 3.5E-05 32.0 7.1 63 311-375 25-87 (109)
249 4fhn_B Nucleoporin NUP120; pro 90.8 9.8 0.00034 41.3 18.2 163 169-349 817-989 (1139)
250 4b4t_P 26S proteasome regulato 90.4 9.4 0.00032 36.3 15.8 185 208-393 29-244 (445)
251 3ffl_A Anaphase-promoting comp 89.1 2.4 8.1E-05 33.6 8.5 111 270-394 25-149 (167)
252 3lpz_A GET4 (YOR164C homolog); 88.8 13 0.00045 33.4 21.0 170 164-359 35-215 (336)
253 3ffl_A Anaphase-promoting comp 88.6 1.4 4.8E-05 34.9 6.9 124 325-463 12-149 (167)
254 4gns_B Protein CSD3, chitin bi 88.5 2.4 8.3E-05 43.1 10.4 53 304-358 345-398 (754)
255 2ff4_A Probable regulatory pro 87.8 1.6 5.6E-05 40.8 8.3 64 336-401 176-247 (388)
256 2y69_E Cytochrome C oxidase su 87.5 2.4 8.2E-05 32.0 7.1 74 311-395 68-141 (152)
257 4fhn_B Nucleoporin NUP120; pro 87.4 4.1 0.00014 44.3 12.2 124 336-468 817-970 (1139)
258 1zbp_A Hypothetical protein VP 87.4 8.7 0.0003 33.2 11.6 123 304-438 5-136 (273)
259 1v54_E Cytochrome C oxidase po 87.0 4.3 0.00015 29.0 7.8 47 213-259 28-74 (109)
260 4ady_A RPN2, 26S proteasome re 85.5 38 0.0013 35.4 30.7 251 172-429 382-656 (963)
261 4b4t_P 26S proteasome regulato 85.3 26 0.00089 33.3 19.9 198 177-392 29-263 (445)
262 2uwj_G Type III export protein 85.2 7.9 0.00027 27.4 8.3 60 172-234 47-106 (115)
263 2p58_C Putative type III secre 84.9 8.4 0.00029 27.3 9.0 60 172-234 48-107 (116)
264 1zbp_A Hypothetical protein VP 83.0 2.6 8.7E-05 36.5 6.3 50 415-464 10-59 (273)
265 3txn_A 26S proteasome regulato 82.0 32 0.0011 31.9 19.0 286 165-468 20-346 (394)
266 3o48_A Mitochondria fission 1 81.2 16 0.00054 27.7 9.5 73 327-400 36-112 (134)
267 2y69_E Cytochrome C oxidase su 78.0 13 0.00045 28.1 7.8 47 214-260 72-118 (152)
268 4a1g_A Mitotic checkpoint seri 77.2 20 0.0007 27.9 9.2 80 384-469 52-134 (152)
269 4b4t_R RPN7, 26S proteasome re 75.9 13 0.00044 35.1 9.6 93 267-359 133-236 (429)
270 3mv2_A Coatomer subunit alpha; 74.2 48 0.0016 29.5 11.9 67 382-465 185-256 (325)
271 4b4t_R RPN7, 26S proteasome re 73.1 24 0.00081 33.3 10.6 59 165-223 132-196 (429)
272 3ltj_A Alpharep-4; protein eng 72.3 38 0.0013 27.5 21.1 82 161-246 25-106 (201)
273 3ltm_A Alpha-REP4; protein eng 71.8 40 0.0014 27.6 20.0 43 168-210 37-79 (211)
274 3esl_A Checkpoint serine/threo 70.6 43 0.0015 27.5 12.9 54 416-469 93-148 (202)
275 2wvi_A Mitotic checkpoint seri 69.1 29 0.001 27.4 8.4 49 421-469 79-129 (164)
276 1qsa_A Protein (soluble lytic 66.0 1.1E+02 0.0037 30.4 36.9 393 47-470 56-484 (618)
277 3ltm_A Alpha-REP4; protein eng 65.9 54 0.0018 26.8 20.3 169 178-359 16-184 (211)
278 1y8m_A FIS1; mitochondria, unk 63.6 48 0.0016 25.4 11.2 30 407-439 85-114 (144)
279 1wdy_A 2-5A-dependent ribonucl 62.8 72 0.0025 27.2 12.0 16 174-189 112-127 (285)
280 3kea_A K1L; tropism, ANK repea 61.0 65 0.0022 28.0 10.5 92 374-472 133-224 (285)
281 4aez_C MAD3, mitotic spindle c 58.3 46 0.0016 27.8 8.0 47 423-469 135-183 (223)
282 4a1g_A Mitotic checkpoint seri 55.3 55 0.0019 25.4 7.6 34 196-229 102-135 (152)
283 3ltj_A Alpharep-4; protein eng 54.9 82 0.0028 25.4 19.7 162 185-359 18-179 (201)
284 4gq2_M Nucleoporin NUP120; bet 53.5 73 0.0025 33.7 10.7 86 337-431 816-926 (950)
285 2qx5_A Nucleoporin NIC96; mRNA 52.6 1.9E+02 0.0065 28.9 20.1 44 100-144 156-199 (661)
286 2nsz_A Programmed cell death p 52.3 72 0.0025 23.9 8.4 65 167-231 10-79 (129)
287 3ljn_A Hypothetical protein; a 52.1 42 0.0014 30.4 8.0 94 29-127 17-112 (364)
288 2nsz_A Programmed cell death p 51.9 64 0.0022 24.2 7.5 64 268-331 10-78 (129)
289 2d2s_A Exocyst complex compone 51.1 64 0.0022 27.3 8.1 23 201-223 24-46 (235)
290 1wdy_A 2-5A-dependent ribonucl 50.2 96 0.0033 26.4 9.8 76 47-130 18-99 (285)
291 3mkr_B Coatomer subunit alpha; 49.1 63 0.0021 28.7 7.8 56 394-466 191-248 (320)
292 2ion_A PDCD4, programmed cell 48.9 61 0.0021 25.2 7.1 66 166-231 11-81 (152)
293 3txn_A 26S proteasome regulato 47.2 1.8E+02 0.006 26.9 29.5 286 132-432 20-344 (394)
294 1n11_A Ankyrin; clathrin, BAND 43.2 88 0.003 29.1 8.8 360 68-465 17-402 (437)
295 2ion_A PDCD4, programmed cell 43.2 58 0.002 25.4 6.1 64 268-331 12-80 (152)
296 3ygs_P Procaspase 9; apoptosis 40.3 41 0.0014 23.8 4.4 38 279-316 51-88 (97)
297 4aez_C MAD3, mitotic spindle c 39.5 85 0.0029 26.2 6.8 45 146-191 132-177 (223)
298 3eu9_A Huntingtin-interacting 39.1 1.1E+02 0.0038 25.1 8.1 43 47-92 22-66 (240)
299 1bpo_A Protein (clathrin); cla 38.5 2.6E+02 0.009 26.4 10.6 95 27-126 328-425 (494)
300 1k1a_A B-cell lymphoma 3-encod 37.7 1.7E+02 0.0058 24.0 9.6 24 105-128 15-38 (241)
301 1oyz_A Hypothetical protein YI 37.0 2E+02 0.0067 24.6 23.2 40 170-209 43-82 (280)
302 2d2s_A Exocyst complex compone 36.9 83 0.0029 26.6 6.6 29 435-463 90-118 (235)
303 2fe3_A Peroxide operon regulat 36.1 99 0.0034 23.6 6.5 38 344-382 34-71 (145)
304 1oyz_A Hypothetical protein YI 35.8 2.1E+02 0.0071 24.4 20.5 18 193-210 140-157 (280)
305 4b4t_S RPN3, 26S proteasome re 34.7 3.2E+02 0.011 26.3 10.9 62 264-325 230-299 (523)
306 2qx5_A Nucleoporin NIC96; mRNA 34.3 3.7E+02 0.013 26.9 20.3 42 63-108 154-198 (661)
307 3hra_A Ankyrin repeat family p 34.1 1.7E+02 0.006 23.1 9.5 47 79-130 16-66 (201)
308 1wgl_A TOLL-interacting protei 32.8 37 0.0013 21.4 2.8 24 447-470 34-57 (59)
309 3ygs_P Procaspase 9; apoptosis 32.8 48 0.0016 23.4 3.8 39 79-117 51-89 (97)
310 4b4t_S RPN3, 26S proteasome re 32.3 1.4E+02 0.0048 28.7 7.9 63 331-393 231-296 (523)
311 1ya0_A SMG-7 transcript varian 31.7 1.3E+02 0.0045 28.9 7.8 44 416-459 166-209 (497)
312 2keb_A DNA polymerase subunit 31.6 1.2E+02 0.0043 21.3 5.4 33 114-146 27-59 (101)
313 3kea_A K1L; tropism, ANK repea 31.1 1.4E+02 0.0046 25.9 7.5 12 79-90 42-53 (285)
314 2xig_A Ferric uptake regulatio 30.7 1.4E+02 0.0048 22.9 6.6 37 345-382 40-76 (150)
315 2pk8_A Uncharacterized protein 30.5 20 0.00067 24.8 1.3 26 492-517 12-37 (103)
316 3bu8_A Telomeric repeat-bindin 29.4 2.4E+02 0.0083 23.3 9.0 54 347-400 88-148 (235)
317 3l6a_A Eukaryotic translation 29.4 2E+02 0.0067 26.3 8.2 67 167-233 15-86 (364)
318 4gq2_M Nucleoporin NUP120; bet 29.1 5.3E+02 0.018 27.2 12.8 121 170-310 816-950 (950)
319 1wty_A Hypothetical protein TT 28.2 1.8E+02 0.006 21.3 7.0 80 382-467 3-84 (119)
320 4ets_A Ferric uptake regulatio 27.7 1.1E+02 0.0039 23.9 5.6 61 322-383 24-85 (162)
321 2keb_A DNA polymerase subunit 27.6 1.6E+02 0.0055 20.7 5.4 29 315-343 28-56 (101)
322 2o03_A Probable zinc uptake re 27.0 1E+02 0.0034 23.1 5.0 46 301-346 15-60 (131)
323 3kae_A CDC27, possible protein 26.6 2.5E+02 0.0084 22.4 9.6 77 177-255 46-139 (242)
324 3ljn_A Hypothetical protein; a 25.8 1E+02 0.0035 27.8 5.9 82 375-461 178-266 (364)
325 2r9g_A AAA ATPase, central reg 25.5 2.8E+02 0.0095 22.7 8.5 48 98-146 13-63 (204)
326 2fe3_A Peroxide operon regulat 25.2 2E+02 0.007 21.8 6.6 59 221-280 13-71 (145)
327 2jy5_A Ubiquilin-1; UBA, alter 24.5 1.2E+02 0.0042 18.3 5.3 39 381-425 10-48 (52)
328 2r9g_A AAA ATPase, central reg 24.4 2.9E+02 0.0099 22.6 9.6 37 308-345 26-62 (204)
329 3eu9_A Huntingtin-interacting 24.1 2.9E+02 0.0099 22.4 9.0 37 79-115 20-58 (240)
330 3i5p_A Nucleoporin NUP170; hel 23.8 5E+02 0.017 25.1 10.8 67 396-468 175-249 (525)
331 4g8k_A 2-5A-dependent ribonucl 23.8 3.7E+02 0.013 23.5 11.9 17 273-289 244-260 (337)
332 3esl_A Checkpoint serine/threo 23.4 3.1E+02 0.01 22.5 12.5 58 208-265 92-150 (202)
333 2crb_A Nuclear receptor bindin 23.2 86 0.0029 21.8 3.4 26 438-463 17-42 (97)
334 2p1h_A APAF-1, apoptotic prote 23.2 1.9E+02 0.0064 19.9 7.2 36 278-313 49-84 (94)
335 2w57_A Ferric uptake regulatio 22.9 2.6E+02 0.0088 21.4 6.9 61 219-280 6-67 (150)
336 3eyy_A Putative iron uptake re 22.7 1.6E+02 0.0055 22.4 5.6 34 348-382 34-67 (145)
337 1mzb_A Ferric uptake regulatio 22.5 2.5E+02 0.0084 21.0 6.8 60 219-279 7-67 (136)
338 3bge_A Predicted ATPase; struc 22.5 3.2E+02 0.011 22.3 7.9 45 200-244 9-56 (201)
339 2dah_A Ubiquilin-3; UBA domain 22.4 1.4E+02 0.0049 18.2 4.4 39 382-426 8-46 (54)
340 3bu8_A Telomeric repeat-bindin 22.1 3.4E+02 0.012 22.5 7.7 22 338-359 121-142 (235)
341 3bge_A Predicted ATPase; struc 22.0 3.2E+02 0.011 22.2 8.9 44 302-345 10-56 (201)
342 3re2_A Predicted protein; meni 21.9 4.4E+02 0.015 23.9 8.4 68 421-508 276-348 (472)
343 2zu6_B Programmed cell death p 21.9 2.5E+02 0.0087 24.8 7.3 92 168-259 170-270 (307)
344 3mwm_A ZUR, putative metal upt 21.9 92 0.0031 23.6 3.9 43 303-345 20-62 (139)
345 1ug3_A EIF4GI, eukaryotic prot 21.7 2.9E+02 0.0099 24.8 7.9 25 198-222 14-38 (339)
346 3u84_A Menin; MLL, JUND, ledgf 21.3 4.4E+02 0.015 24.5 8.4 68 421-508 298-370 (550)
347 2bwb_A Ubiquitin-like protein 21.2 1.4E+02 0.0046 17.5 4.4 11 415-425 33-43 (46)
348 3hra_A Ankyrin repeat family p 21.0 2.7E+02 0.0094 21.9 7.2 84 103-189 9-94 (201)
349 1ug3_A EIF4GI, eukaryotic prot 21.0 4.5E+02 0.015 23.5 12.9 62 167-228 14-79 (339)
350 1n11_A Ankyrin; clathrin, BAND 20.6 4.9E+02 0.017 23.8 11.5 318 47-397 27-370 (437)
351 2xig_A Ferric uptake regulatio 20.0 3E+02 0.01 21.0 6.9 60 220-280 17-76 (150)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6e-37 Score=313.26 Aligned_cols=427 Identities=10% Similarity=-0.008 Sum_probs=366.8
Q ss_pred CCcccHHHHHHhcc---CchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcC--CCCCcchHHHH
Q 048578 28 TKSHHHLPLLQKCT---HLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQI--INPSTFAFNTV 102 (519)
Q Consensus 28 p~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~l 102 (519)
|+...|+.++..+. ....+..+++.+.+ ..|+..++..++..|.+. |++++|..+|+.+ ..++..+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~l 156 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCT---GDYARAKCLLTKEDLYNRSSACRYLA 156 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHT---TCHHHHHHHHHHTCGGGTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHc---CcHHHHHHHHHHHhccccchhHHHHH
Confidence 56667777877764 45555777777774 456778889999999999 9999999999998 56888999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC---------------CCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCc-hhH
Q 048578 103 IRGYAEAGLGHRGIQLYTQMIGN---------------GLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSV-IHS 166 (519)
Q Consensus 103 l~~~~~~g~~~~a~~~~~~m~~~---------------g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 166 (519)
+.+|.+.|++++|+++|+++... |.+++..+|+.+..++.+.|+.+++.+.+.+.....|+ ...
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 236 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA 236 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHH
Confidence 99999999999999999953221 22345779999999999999966666665543222332 222
Q ss_pred H--------------------------------------HHHHHHHHhcCChHHHHHHHhcCCC--CchhHHHHHHHHHH
Q 048578 167 L--------------------------------------TRLITFYCNFGDVKSAQLLFDQMTE--KNVVTWTAMINGHV 206 (519)
Q Consensus 167 ~--------------------------------------~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~ 206 (519)
+ +.++..|.+.|++++|.++|+++.+ ++..+|+.++.+|.
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 2 2235567788999999999999988 78999999999999
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHH
Q 048578 207 KQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALR 286 (519)
Q Consensus 207 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 286 (519)
+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+..++..++.+|.+.|++++|.+
T Consensus 317 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence 9999999999999999875 3377789999999999999999999999999765 6678899999999999999999999
Q ss_pred HHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCC
Q 048578 287 VFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKV 363 (519)
Q Consensus 287 ~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 363 (519)
+|+++.+ .+..+|+.++.++.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+. .
T Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~ 471 (597)
T 2xpi_A 395 YFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--F 471 (597)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 9998853 467899999999999999999999999999864 557789999999999999999999999999883 4
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 364 EPNVKHYGCLVDLLCRARLLDEAYEVIRNM-------PMEPN--AVLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 364 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~p~--~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
+.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..+..+|.. .|++++|.+.++++.+.+|+
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK---LKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHSSC
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHhCCC
Confidence 557889999999999999999999999988 45787 7899999999999 99999999999999999999
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 435 NDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
++.+|..++.+|.+.|++++|.+.++++.+.+.
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999987543
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-33 Score=289.14 Aligned_cols=409 Identities=8% Similarity=-0.027 Sum_probs=349.1
Q ss_pred CCCCcccHHHHHHhccCch---HHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCCC--------
Q 048578 26 TATKSHHHLPLLQKCTHLV---QFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINP-------- 94 (519)
Q Consensus 26 ~~p~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~-------- 94 (519)
..|+..++..+..++...+ .+..+++.+. ..++++.+++.++..|.+. |++++|.++|+++.+.
T Consensus 113 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~ 187 (597)
T 2xpi_A 113 ITGNPNDAFWLAQVYCCTGDYARAKCLLTKED--LYNRSSACRYLAAFCLVKL---YDWQGALNLLGETNPFRKDEKNAN 187 (597)
T ss_dssp HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTC--GGGTCHHHHHHHHHHHHHT---TCHHHHHHHHCSSCTTC-------
T ss_pred hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHh--ccccchhHHHHHHHHHHHH---hhHHHHHHHHhccCCccccccccc
Confidence 3466677777777765444 4455555443 3478899999999999999 9999999999975443
Q ss_pred -----------CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcc-hHHHH-------------------------
Q 048578 95 -----------STFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSF-TYPIL------------------------- 137 (519)
Q Consensus 95 -----------~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l------------------------- 137 (519)
+..+|+.++.+|.+.|++++|+++|++|.+.+ |+.. .+..+
T Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 265 (597)
T 2xpi_A 188 KLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK 265 (597)
T ss_dssp ---CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHG
T ss_pred cccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCccccc
Confidence 37899999999999999999999999999854 4432 22222
Q ss_pred -------------HHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CchhHHHHH
Q 048578 138 -------------LKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE---KNVVTWTAM 201 (519)
Q Consensus 138 -------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 201 (519)
+..|.+.|+.+++.+.+.+....+++..+++.++.+|.+.|++++|..+|+++.+ .+..+|+.+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 345 (597)
T 2xpi_A 266 EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLH 345 (597)
T ss_dssp GGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHH
T ss_pred chHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHH
Confidence 3445566677778888877665568899999999999999999999999999864 467789999
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCH
Q 048578 202 INGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYI 281 (519)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 281 (519)
+.++.+.|++++|.++++++.+.. +.+..++..++..|.+.|++++|..+|+.+.+.. +.+..+++.++.+|.+.|++
T Consensus 346 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 423 (597)
T 2xpi_A 346 LASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEH 423 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 999999999999999999998653 4578899999999999999999999999999865 55788999999999999999
Q ss_pred HHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcH
Q 048578 282 EEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMR 358 (519)
Q Consensus 282 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 358 (519)
++|+++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++++|.++|+++.
T Consensus 424 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 502 (597)
T 2xpi_A 424 DQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNAL 502 (597)
T ss_dssp HHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999998743 477899999999999999999999999998754 4578899999999999999999999999998
Q ss_pred Hhc---CCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhh
Q 048578 359 RDY---KVEPN--VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKL 431 (519)
Q Consensus 359 ~~~---~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 431 (519)
+.. +..|+ ..+|..++.+|.+.|++++|.+.++++ ...| +..+|..+..+|.. .|++++|.+.++++++.
T Consensus 503 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 503 LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLH---KKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHH
T ss_pred HhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH---hCCHHHHHHHHHHHHhc
Confidence 732 55677 789999999999999999999999998 4445 78899999999999 99999999999999999
Q ss_pred CCCCCchHHHHHHHHH
Q 048578 432 EPFNDGNYVLMSNIYA 447 (519)
Q Consensus 432 ~p~~~~~~~~l~~~~~ 447 (519)
+|+++.++..++.+|.
T Consensus 580 ~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 580 SPNEIMASDLLKRALE 595 (597)
T ss_dssp CTTCHHHHHHHHHTTC
T ss_pred CCCChHHHHHHHHHHh
Confidence 9999999999988774
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2.7e-26 Score=221.25 Aligned_cols=350 Identities=11% Similarity=0.004 Sum_probs=229.7
Q ss_pred HHHHhhcCCCChHHHHHHHhcCC--CC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccc
Q 048578 70 KLIESLVNSSQIAYAHLVFNQII--NP-STFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQ 146 (519)
Q Consensus 70 ~~~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 146 (519)
..+.+. |++++|.+.++.+. .| +...+..+...+...|++++|...++...+.
T Consensus 7 ~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~--------------------- 62 (388)
T 1w3b_A 7 HREYQA---GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------------------- 62 (388)
T ss_dssp HHHHHH---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHC---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------------------
Confidence 344455 77777777776652 23 3345555566666777777777777666552
Q ss_pred hHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-chhHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 048578 147 VKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE--K-NVVTWTAMINGHVKQKNYREGIDLFRKMRD 223 (519)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 223 (519)
.+.+...+..+..+|.+.|++++|...|+++.+ | +..+|..+..++.+.|++++|.+.|+++.+
T Consensus 63 -------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 129 (388)
T 1w3b_A 63 -------------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129 (388)
T ss_dssp -------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred -------------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 233455666666677777777777777776643 3 344567777777777777777777777766
Q ss_pred CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHH
Q 048578 224 SGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWN 300 (519)
Q Consensus 224 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~ 300 (519)
.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++|...|+++.+ .+...|.
T Consensus 130 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 207 (388)
T 1w3b_A 130 YN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYI 207 (388)
T ss_dssp HC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 43 1233445556666666777777777777776654 44556667777777777777777777776643 2445666
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhc
Q 048578 301 SIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRA 380 (519)
Q Consensus 301 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 380 (519)
.+...+...|++++|...+++..... +.+..++..+..++...|++++|...|+++.+ ..+.+..+|..++.++.+.
T Consensus 208 ~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 208 NLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHc
Confidence 66777777777777777777766532 22355667777777777777777777777766 2233456677777777777
Q ss_pred CChHHHHHHHHhC-CCC-CCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHH
Q 048578 381 RLLDEAYEVIRNM-PME-PNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKM 458 (519)
Q Consensus 381 ~~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 458 (519)
|++++|.+.|+++ ... .+..++..+...+.. .|++++|...++++++..|+++.++..++.+|.+.|++++|.+.
T Consensus 285 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (388)
T 1w3b_A 285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKRE---QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT---TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777776 222 355666677777776 77777777777777777777777777777777777777777777
Q ss_pred HHHHHh
Q 048578 459 RRLMKE 464 (519)
Q Consensus 459 ~~~m~~ 464 (519)
++++.+
T Consensus 362 ~~~a~~ 367 (388)
T 1w3b_A 362 YKEAIR 367 (388)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 777765
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=8.8e-26 Score=217.64 Aligned_cols=367 Identities=11% Similarity=0.057 Sum_probs=310.9
Q ss_pred hccCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChhHH
Q 048578 39 KCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQII---NPSTFAFNTVIRGYAEAGLGHRG 115 (519)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a 115 (519)
..++...+.+.+..+.+.. |.+...+..+...+... |++++|...++... +.+..+|..+...+.+.|++++|
T Consensus 11 ~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~---~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQC---RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 3466777777777777664 44556677777888888 99999999998773 35667899999999999999999
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C
Q 048578 116 IQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE--K 193 (519)
Q Consensus 116 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~ 193 (519)
+..|+++.+. .+.+...+..+..++.+.|++++|...|+++.+ |
T Consensus 87 ~~~~~~al~~----------------------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 132 (388)
T 1w3b_A 87 IEHYRHALRL----------------------------------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132 (388)
T ss_dssp HHHHHHHHHH----------------------------------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHc----------------------------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999872 123345677788888999999999999988765 4
Q ss_pred -chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHH
Q 048578 194 -NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALT 272 (519)
Q Consensus 194 -~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 272 (519)
+...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|+++.|...++++.+.+ +.+...+..+.
T Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 210 (388)
T 1w3b_A 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLG 210 (388)
T ss_dssp TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 34567788888999999999999999998763 3356788889999999999999999999999876 55677888999
Q ss_pred HHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 048578 273 DMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEK 349 (519)
Q Consensus 273 ~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 349 (519)
.++...|++++|...|++..+ .+..++..+...+...|++++|...|+++.+.+ +.+..++..+..++.+.|++++
T Consensus 211 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 289 (388)
T 1w3b_A 211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999987743 357789999999999999999999999999853 3356789999999999999999
Q ss_pred HHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHH
Q 048578 350 GKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMER 427 (519)
Q Consensus 350 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~ 427 (519)
|...|+++.+ ..+.+..++..++..+...|++++|.+.++++ ...| +..++..+...+.. .|++++|...+++
T Consensus 290 A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~ 364 (388)
T 1w3b_A 290 AEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ---QGKLQEALMHYKE 364 (388)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT---TTCCHHHHHHHHH
T ss_pred HHHHHHHHHh--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHH
Confidence 9999999998 35677889999999999999999999999998 6566 46789999999999 9999999999999
Q ss_pred HHhhCCCCCchHHHHHHHHHhcCC
Q 048578 428 LIKLEPFNDGNYVLMSNIYAAKAQ 451 (519)
Q Consensus 428 ~~~~~p~~~~~~~~l~~~~~~~g~ 451 (519)
+++..|.++.+|..++.++...|+
T Consensus 365 a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 365 AIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999887764
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=3e-28 Score=239.10 Aligned_cols=183 Identities=14% Similarity=0.159 Sum_probs=161.9
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC---------hHHHHHHHHHHHHcCCCcchh
Q 048578 196 VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGA---------SELGKWVHEFVNKNCIILNDK 266 (519)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 266 (519)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. ++.|..+|++|...|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45778889999999999999999999988999999999999998876654 577888999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcC----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 048578 267 LGAALTDMYAKCGYIEEALRVFKIVL----EKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACS 342 (519)
Q Consensus 267 ~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 342 (519)
+|+++|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999998884 46888999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHh
Q 048578 343 HAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCR 379 (519)
Q Consensus 343 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (519)
+.|++++|.++|++|.+ .+..|+..||+.++..|+.
T Consensus 187 ~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhc
Confidence 99999999999999988 5899999999999888875
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=2e-27 Score=233.30 Aligned_cols=199 Identities=17% Similarity=0.167 Sum_probs=172.7
Q ss_pred hHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCC---------H
Q 048578 212 REGIDLFRKMRDSGVEVNE-LTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGY---------I 281 (519)
Q Consensus 212 ~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~ 281 (519)
..+..+.+++.+.+..+.+ ..++.+|++|++.|++++|..+|++|.+.|+.||..+|++||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 4455666777777766554 46888999999999999999999999999999999999999999987664 7
Q ss_pred HHHHHHHhhcC----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHc
Q 048578 282 EEALRVFKIVL----EKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNM 357 (519)
Q Consensus 282 ~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 357 (519)
++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 89999999984 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHcc
Q 048578 358 RRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM---PMEPNAVLWGSLLTACAS 411 (519)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~ 411 (519)
.+ .|+.||..+|+.||.+|++.|++++|.++|++| +..|+..||+.++..|..
T Consensus 167 ~~-~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VE-SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred Hh-cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 98 699999999999999999999999999999999 899999999999998765
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.9e-22 Score=201.72 Aligned_cols=395 Identities=10% Similarity=-0.042 Sum_probs=297.1
Q ss_pred hHHHHHHHHHhhcCCCChHHHHHHHhcCC--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 048578 64 SDTQLAKLIESLVNSSQIAYAHLVFNQII--NPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKAC 141 (519)
Q Consensus 64 ~~~~ll~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 141 (519)
.+..+...+.+. |++++|...|+++. .|+..+|..+..++.+.|++++|+..++++.+.+ +.+...+..+...+
T Consensus 8 ~~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 8 ALKDKGNQFFRN---KKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHT---SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---ccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 445566677777 88888888888874 3778888888888888889999988888888753 22345777777788
Q ss_pred cCccchHHHHHHHHHhCCCCC-chhHHHHHHHHHHhcCChHHHHHHH---------------------------------
Q 048578 142 GDLRQVKGVHSLVVKSKDFNS-VIHSLTRLITFYCNFGDVKSAQLLF--------------------------------- 187 (519)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~--------------------------------- 187 (519)
...|+.+++...+.+.....| +......++..+........+.+.+
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 888886666655544322222 3333333333333322222222111
Q ss_pred -----hcCCC---------C-chhHHHHHHHHHHH---cCChhHHHHHHHHHHh-----CCCC--------CCHHHHHHH
Q 048578 188 -----DQMTE---------K-NVVTWTAMINGHVK---QKNYREGIDLFRKMRD-----SGVE--------VNELTLVSV 236 (519)
Q Consensus 188 -----~~~~~---------~-~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~~~~--------~~~~~~~~l 236 (519)
..... | +...+......+.. .|++++|...|+++.+ ..-. .+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 11110 1 13445555555554 8999999999999987 3111 234577788
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChH
Q 048578 237 LSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGE 313 (519)
Q Consensus 237 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 313 (519)
...+...|+++.|...++.+.+.+.. ...+..+..++...|++++|...++++.+ .+..++..+...+...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 88899999999999999999988643 88889999999999999999999998855 36678899999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 048578 314 EAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM 393 (519)
Q Consensus 314 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 393 (519)
+|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++
T Consensus 322 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 322 QAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999998864 335678899999999999999999999999883 3446678899999999999999999999887
Q ss_pred -CC---CCC----HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048578 394 -PM---EPN----AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 394 -~~---~p~----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
.. .++ ...+..+...+......|++++|...++++++..|.++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 22 222 3366666666654111478999999999999999999999999999999999999999999999875
Q ss_pred CC
Q 048578 466 NI 467 (519)
Q Consensus 466 ~~ 467 (519)
+.
T Consensus 479 ~~ 480 (514)
T 2gw1_A 479 AR 480 (514)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=3.8e-22 Score=196.19 Aligned_cols=326 Identities=13% Similarity=0.048 Sum_probs=262.1
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 048578 95 STFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFY 174 (519)
Q Consensus 95 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 174 (519)
+...|..+...+.+.|++++|+.+|+++.+. .+.+...+..+..+|
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----------------------------------~p~~~~~~~~l~~~~ 70 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG----------------------------------DPDNYIAYYRRATVF 70 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------------CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------------------------CCccHHHHHHHHHHH
Confidence 4567888888999999999999999998863 233456677777888
Q ss_pred HhcCChHHHHHHHhcCCC---CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH----HHHHHH-----------
Q 048578 175 CNFGDVKSAQLLFDQMTE---KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNE----LTLVSV----------- 236 (519)
Q Consensus 175 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l----------- 236 (519)
...|++++|...|+++.+ .+..+|..+..+|.+.|++++|.+.|+++.+.. |+. ..+..+
T Consensus 71 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~ 148 (450)
T 2y4t_A 71 LAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRS 148 (450)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHH
Confidence 888888888888888765 346678888888999999999999998888753 433 444444
Q ss_pred -HHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCCh
Q 048578 237 -LSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCG 312 (519)
Q Consensus 237 -l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 312 (519)
...+...|+++.|...++.+.+.. +.+..++..+..+|.+.|++++|.++|+++.+ .+..+|..+...+...|++
T Consensus 149 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 227 (450)
T 2y4t_A 149 QALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDH 227 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 344788899999999999998875 56778888999999999999999999988854 4678899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHH------------HHHHhccCcHHHHHHHHHHcHHhcCCCCC--hhHHHHHHHHH
Q 048578 313 EEAVKMFWQMQMSGIKPDD-VTLIAV------------LTACSHAGLIEKGKEIFYNMRRDYKVEPN--VKHYGCLVDLL 377 (519)
Q Consensus 313 ~~a~~~~~~m~~~g~~p~~-~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~ 377 (519)
++|...|+++.+. .|+. ..+..+ ..+|...|++++|...|+++.+.....|. ...|..++.++
T Consensus 228 ~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~ 305 (450)
T 2y4t_A 228 ELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCF 305 (450)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 9999999999864 4443 344444 78899999999999999999873211111 45788899999
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHH----------
Q 048578 378 CRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNI---------- 445 (519)
Q Consensus 378 ~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~---------- 445 (519)
.+.|++++|+..++++ ...| +...|..+..+|.. .|++++|...++++++..|.++.++..++.+
T Consensus 306 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 382 (450)
T 2y4t_A 306 SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLI---EEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKR 382 (450)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccch
Confidence 9999999999999998 4455 67889999999999 9999999999999999999999999998844
Q ss_pred --HHhcC-----CchHHHHHHHHH
Q 048578 446 --YAAKA-----QWDDAGKMRRLM 462 (519)
Q Consensus 446 --~~~~g-----~~~~A~~~~~~m 462 (519)
|...| +.+++.+.++++
T Consensus 383 ~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 383 DYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp CSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred hHHHHhCCCccCCHHHHHHHHHHH
Confidence 55555 556777777763
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=6.7e-22 Score=194.38 Aligned_cols=299 Identities=11% Similarity=0.015 Sum_probs=257.9
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048578 161 NSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE---KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVL 237 (519)
Q Consensus 161 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 237 (519)
+.+...+..++..|.+.|++++|..+|+++.+ .+..+|..+..++...|++++|...|+++.+.+ +.+...+..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 45677889999999999999999999998865 467889999999999999999999999998875 34578889999
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCcch---hHHHHH------------HHHHHhcCCHHHHHHHHhhcCC---CChhhH
Q 048578 238 SACANLGASELGKWVHEFVNKNCIILND---KLGAAL------------TDMYAKCGYIEEALRVFKIVLE---KNVCTW 299 (519)
Q Consensus 238 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~---~~~~~~ 299 (519)
.++.+.|+++.|...++.+.+.+ +.+. ..+..+ ...+...|++++|...|+++.+ .+...+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 180 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR 180 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 99999999999999999999865 3344 555544 4458999999999999998854 467889
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHH------
Q 048578 300 NSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCL------ 373 (519)
Q Consensus 300 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l------ 373 (519)
..+...+.+.|++++|..+|+++.+.. +.+..++..+..++...|++++|...|+++.+. .+.+...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHH
Confidence 999999999999999999999998753 456789999999999999999999999999873 33344555544
Q ss_pred ------HHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHH
Q 048578 374 ------VDLLCRARLLDEAYEVIRNM-PMEPN-----AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVL 441 (519)
Q Consensus 374 ------~~~~~~~~~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 441 (519)
+..+...|++++|.+.|+++ .+.|+ ...+..+...+.. .|++++|...++++++..|+++.+|..
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~a~~~~p~~~~~~~~ 334 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSK---DEKPVEAIRVCSEVLQMEPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 88999999999999999998 55565 3477888888998 999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 442 MSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
++.+|...|++++|...+++..+...
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~p 360 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHNE 360 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999988543
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.2e-21 Score=196.08 Aligned_cols=391 Identities=8% Similarity=-0.081 Sum_probs=308.4
Q ss_pred hccCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChhHH
Q 048578 39 KCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQII---NPSTFAFNTVIRGYAEAGLGHRG 115 (519)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a 115 (519)
...+...+...++.+.+.. |++.++..+...|.+. |++++|...|+.+. +.+..+|..+..++.+.|++++|
T Consensus 18 ~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 92 (514)
T 2gw1_A 18 RNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSV---GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADA 92 (514)
T ss_dssp HTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHH---hhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHH
Confidence 3467777888899888876 6889999999999999 99999999999874 34567899999999999999999
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHcCccchHH--------------------------------------HHHHHHHh
Q 048578 116 IQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKG--------------------------------------VHSLVVKS 157 (519)
Q Consensus 116 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~--------------------------------------~~~~~~~~ 157 (519)
+..|+++.+.+. ++......++..+........ +...+...
T Consensus 93 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
T 2gw1_A 93 MFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171 (514)
T ss_dssp HHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTS
T ss_pred HHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhc
Confidence 999999998753 333343333333322111110 00111000
Q ss_pred CC--------CCCchhHHHHHHHHHHh---cCChHHHHHHHhcCCC----------------C-chhHHHHHHHHHHHcC
Q 048578 158 KD--------FNSVIHSLTRLITFYCN---FGDVKSAQLLFDQMTE----------------K-NVVTWTAMINGHVKQK 209 (519)
Q Consensus 158 ~~--------~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~li~~~~~~~ 209 (519)
.. .+.+...+......+.. .|++++|..+|+++.+ | +..+|..+...+...|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (514)
T 2gw1_A 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN 251 (514)
T ss_dssp CCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCC
Confidence 00 01124444444454554 8999999999988754 1 3457888999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHh
Q 048578 210 NYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFK 289 (519)
Q Consensus 210 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 289 (519)
++++|...|+++.+... +...+..+..++...|+++.|...++.+.+.. +.+..++..+..+|...|++++|...|+
T Consensus 252 ~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 328 (514)
T 2gw1_A 252 DPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFD 328 (514)
T ss_dssp CHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999988753 37888889999999999999999999998875 5577889999999999999999999999
Q ss_pred hcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC
Q 048578 290 IVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN 366 (519)
Q Consensus 290 ~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 366 (519)
++.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+...-.++
T Consensus 329 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 407 (514)
T 2gw1_A 329 KAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG 407 (514)
T ss_dssp HHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccch
Confidence 8743 366788999999999999999999999998753 335678899999999999999999999998773222222
Q ss_pred ----hhHHHHHHHHHHh---cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCc
Q 048578 367 ----VKHYGCLVDLLCR---ARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDG 437 (519)
Q Consensus 367 ----~~~~~~l~~~~~~---~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (519)
...+..+...+.. .|++++|...++++ ...| +..++..+...+.. .|++++|...++++++.+|.++.
T Consensus 408 ~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~a~~~~~~~~~ 484 (514)
T 2gw1_A 408 IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQ---QEDIDEAITLFEESADLARTMEE 484 (514)
T ss_dssp CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHhccccHH
Confidence 3488999999999 99999999999998 4445 56788888889999 99999999999999999999877
Q ss_pred hHHHH
Q 048578 438 NYVLM 442 (519)
Q Consensus 438 ~~~~l 442 (519)
.+..+
T Consensus 485 ~~~~~ 489 (514)
T 2gw1_A 485 KLQAI 489 (514)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77665
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=7.9e-21 Score=191.20 Aligned_cols=410 Identities=9% Similarity=-0.038 Sum_probs=275.4
Q ss_pred cCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChhHHHH
Q 048578 41 THLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQII---NPSTFAFNTVIRGYAEAGLGHRGIQ 117 (519)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~ 117 (519)
.+...+...++.+.+.. +.++.++..+...|.+. |++++|.+.|+++. +.+..+|..+..++...|++++|+.
T Consensus 39 g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 114 (537)
T 3fp2_A 39 KNFNEAIKYYQYAIELD-PNEPVFYSNISACYIST---GDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMF 114 (537)
T ss_dssp TCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 56666677777777664 44667777778888887 88888888887763 2455677777788888888888888
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCC----CchhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 048578 118 LYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFN----SVIHSLTRLITFYCNFGDVKSAQLLFDQMTEK 193 (519)
Q Consensus 118 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 193 (519)
.|+ .... .|+.... .+..+...+...+....+.+.-... +........+..+....+.+.+...+......
T Consensus 115 ~~~-~~~~--~~~~~~~--~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (537)
T 3fp2_A 115 DLS-VLSL--NGDFDGA--SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNY 189 (537)
T ss_dssp HHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSS
T ss_pred HHH-HHhc--CCCCChH--HHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccc
Confidence 885 3322 2222111 1111111222223333332221111 11111223334455566666666666555543
Q ss_pred chh---HHHHHHHHHH--------HcCChhHHHHHHHHHHhCCCCCC------HHHHHHHHHHHhccCChHHHHHHHHHH
Q 048578 194 NVV---TWTAMINGHV--------KQKNYREGIDLFRKMRDSGVEVN------ELTLVSVLSACANLGASELGKWVHEFV 256 (519)
Q Consensus 194 ~~~---~~~~li~~~~--------~~~~~~~a~~~~~~m~~~~~~~~------~~~~~~ll~~~~~~~~~~~a~~~~~~~ 256 (519)
+.. ....+...+. ..|++++|..+|+++.+...... ..++..+...+...|+++.|...++.+
T Consensus 190 ~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~ 269 (537)
T 3fp2_A 190 DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQES 269 (537)
T ss_dssp CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 322 2333332222 22478888888888887532211 224666667778888999999999998
Q ss_pred HHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 048578 257 NKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVT 333 (519)
Q Consensus 257 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 333 (519)
.+.. |+...+..+...+...|++++|...|+++.+ .+..++..+...+...|++++|...++++.+.. +.+...
T Consensus 270 ~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 346 (537)
T 3fp2_A 270 INLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYP 346 (537)
T ss_dssp HHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHH
T ss_pred HhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 8875 3477888888889999999999999888743 356788888889999999999999999988753 334568
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC---C----CCHHHHHHH
Q 048578 334 LIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PM---E----PNAVLWGSL 405 (519)
Q Consensus 334 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~---~----p~~~~~~~l 405 (519)
+..+..++...|++++|...++++.+. .+.+...+..+...+...|++++|.+.|+++ .. . .....+...
T Consensus 347 ~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 424 (537)
T 3fp2_A 347 YIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGK 424 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHH
Confidence 888888999999999999999998873 3455678888899999999999999998886 11 1 122223344
Q ss_pred HHHHccccCC----------CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 406 LTACASADDG----------ANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 406 l~~~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
...+.. . |++++|...++++++.+|.++.++..++.+|.+.|++++|.+.+++..+...
T Consensus 425 a~~~~~---~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 425 ATILAR---QSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp HHHHHH---HHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHH---HhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 445555 5 8899999999999999999899999999999999999999999999877554
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=1.3e-19 Score=172.17 Aligned_cols=296 Identities=11% Similarity=0.004 Sum_probs=246.8
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCC---CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048578 163 VIHSLTRLITFYCNFGDVKSAQLLFDQMTE---KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSA 239 (519)
Q Consensus 163 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 239 (519)
++..+..+...+...|++++|...|+++.+ .+..+|..+..++...|++++|...|+++.+.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 345677788889999999999999998865 456788899999999999999999999998764 3356788889999
Q ss_pred HhccCChHHHHHHHHHHHHcCCC---cchhHHHHH------------HHHHHhcCCHHHHHHHHhhcCC---CChhhHHH
Q 048578 240 CANLGASELGKWVHEFVNKNCII---LNDKLGAAL------------TDMYAKCGYIEEALRVFKIVLE---KNVCTWNS 301 (519)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ 301 (519)
+...|+++.|...++.+.+.. + .+...+..+ ...+...|++++|...++++.+ .+...+..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 999999999999999998865 3 344555444 5889999999999999998754 46778889
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHH----------
Q 048578 302 IIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYG---------- 371 (519)
Q Consensus 302 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---------- 371 (519)
+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|++..+. .+.+...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHH
Confidence 9999999999999999999998763 556779999999999999999999999999873 233333333
Q ss_pred --HHHHHHHhcCChHHHHHHHHhC-CCCCCHH-----HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 048578 372 --CLVDLLCRARLLDEAYEVIRNM-PMEPNAV-----LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMS 443 (519)
Q Consensus 372 --~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~-----~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (519)
.+...+.+.|++++|...++++ ...|+.. .+..+...+.. .|++++|...++++++.+|.++.++..++
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 313 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSK---DEKPVEAIRICSEVLQMEPDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 2367799999999999999988 4445432 34456677888 99999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHhCC
Q 048578 444 NIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
.+|.+.|++++|.+.+++..+..
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999999997743
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=1.6e-19 Score=171.48 Aligned_cols=314 Identities=11% Similarity=0.014 Sum_probs=249.1
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 048578 95 STFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFY 174 (519)
Q Consensus 95 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 174 (519)
|+..+..+...+...|++++|+..|+++.+. .+.+...+..+..++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----------------------------------~p~~~~~~~~~a~~~ 47 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG----------------------------------DPDNYIAYYRRATVF 47 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------------CTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------------------------------CcccHHHHHHHHHHH
Confidence 3456777888889999999999999988873 233455667777788
Q ss_pred HhcCChHHHHHHHhcCCC--C-chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC--CCHHHHHHH------------H
Q 048578 175 CNFGDVKSAQLLFDQMTE--K-NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVE--VNELTLVSV------------L 237 (519)
Q Consensus 175 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~l------------l 237 (519)
...|++++|...|+++.+ | +...|..+..++...|++++|...|++..+.... .+...+..+ .
T Consensus 48 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 127 (359)
T 3ieg_A 48 LAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQA 127 (359)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888754 3 5667888888889999999999999888875320 133334333 4
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHH
Q 048578 238 SACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEE 314 (519)
Q Consensus 238 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~ 314 (519)
..+...|+++.|...++.+.+.. +.+...+..+..++...|++++|...++++.+ .+..++..+...+...|++++
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHEL 206 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 67888999999999999998875 56778888999999999999999999988854 366788889999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHH------------HHHHHHhccCcHHHHHHHHHHcHHhcCCCCCh----hHHHHHHHHHH
Q 048578 315 AVKMFWQMQMSGIKPDDVTLI------------AVLTACSHAGLIEKGKEIFYNMRRDYKVEPNV----KHYGCLVDLLC 378 (519)
Q Consensus 315 a~~~~~~m~~~g~~p~~~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~ 378 (519)
|...+++..+.. +.+...+. .+...+...|++++|...++++.+.. +.+. ..+..+..++.
T Consensus 207 A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~ 283 (359)
T 3ieg_A 207 SLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFS 283 (359)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHH
Confidence 999999988743 22233332 23667899999999999999998842 2222 33556888999
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 048578 379 RARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAK 449 (519)
Q Consensus 379 ~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 449 (519)
..|++++|.+.+++. ...| +..++..+...+.. .|++++|...++++++.+|+++.++..+..++...
T Consensus 284 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 284 KDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI---EEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 999999999999998 4455 67788889899999 99999999999999999999999888888776654
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.9e-18 Score=162.01 Aligned_cols=287 Identities=14% Similarity=0.020 Sum_probs=221.1
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 048578 160 FNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE---KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSV 236 (519)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 236 (519)
.+.+...+..++..+...|++++|..+|+++.+ .+...+..++.++...|++++|..+++++.+.. +.+...+..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 455566777778888888999999998888754 344566677788888899999999998888763 3356677778
Q ss_pred HHHHhccC-ChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCCh
Q 048578 237 LSACANLG-ASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCG 312 (519)
Q Consensus 237 l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 312 (519)
...+...| +++.|...++.+.+.. +.+...+..+..++...|++++|...|+++.+ .+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 88888888 8888988888888765 45667788888888888888888888887743 3456677788888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcC-------CCCChhHHHHHHHHHHhcCChHH
Q 048578 313 EEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYK-------VEPNVKHYGCLVDLLCRARLLDE 385 (519)
Q Consensus 313 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~ 385 (519)
++|...+++..+.. +.+...+..+...+...|++++|...++++.+... .+....++..+..+|...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 88988888887653 44566888888888888888888888888876321 13345678888888888888888
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH-hcCCc
Q 048578 386 AYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYA-AKAQW 452 (519)
Q Consensus 386 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~ 452 (519)
|...+++. ...| +...+..+...+.. .|++++|...++++++..|+++..+..++.++. ..|+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSL---MGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHH---HTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHH---hccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 88888887 3334 45677777778888 888888888888888888888888888888874 55553
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=2.5e-18 Score=161.19 Aligned_cols=266 Identities=11% Similarity=0.021 Sum_probs=230.6
Q ss_pred CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHH
Q 048578 193 KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALT 272 (519)
Q Consensus 193 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 272 (519)
.+...+..+...+...|++++|.++|+++.+.. +.+...+..++.++...|+++.|..+++.+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 456677888899999999999999999998764 3345566677788899999999999999999875 56778899999
Q ss_pred HHHHhcC-CHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 048578 273 DMYAKCG-YIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIE 348 (519)
Q Consensus 273 ~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 348 (519)
..+...| ++++|...|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998865 356789999999999999999999999998753 334567777999999999999
Q ss_pred HHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC----------CCCHHHHHHHHHHHccccCCCC
Q 048578 349 KGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PM----------EPNAVLWGSLLTACASADDGAN 417 (519)
Q Consensus 349 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~----------~p~~~~~~~ll~~~~~~~~~~~ 417 (519)
+|...++++.+ ..+.+...+..+...+...|++++|...+++. .. ..+..++..+...+.. .|+
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~ 251 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK---LKK 251 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH---TTC
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH---hcC
Confidence 99999999987 34566788999999999999999999999887 11 2345688889999999 999
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 418 VELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
+++|...++++++..|.++.++..++.+|.+.|++++|.+.+++..+..
T Consensus 252 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999999876543
No 16
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=1.9e-17 Score=166.51 Aligned_cols=412 Identities=10% Similarity=0.016 Sum_probs=294.4
Q ss_pred hhhhhhhhhccccCCCCCCCCCcccHHHHHHhc---cCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHH
Q 048578 8 NSQLTHFTNSANSHKNSNTATKSHHHLPLLQKC---THLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYA 84 (519)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A 84 (519)
..++..++.+....+ .+...+..+-..+ .+...+...++.+.+.. +.+..++..+...+... |++++|
T Consensus 42 ~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~---g~~~~A 112 (537)
T 3fp2_A 42 NEAIKYYQYAIELDP-----NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESL---GNFTDA 112 (537)
T ss_dssp C-CHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH---TCHHHH
T ss_pred HHHHHHHHHHHhhCC-----CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHc---CCHHHH
Confidence 345566666655322 1334444333333 67777788888888775 55678888999999999 999999
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCCCcchHHHHHHHHcCccchHHHHHHHHHhC
Q 048578 85 HLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGN------GLDPDSFTYPILLKACGDLRQVKGVHSLVVKSK 158 (519)
Q Consensus 85 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 158 (519)
...|+.+ ..++...+..+..+...+...+|+..++++... ...|+...... +....+.......+.+..
T Consensus 113 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 187 (537)
T 3fp2_A 113 MFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS----FFGIFDSHLEVSSVNTSS 187 (537)
T ss_dssp HHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH----HHHTSCHHHHHHTSCCCC
T ss_pred HHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH----HHHhcChHHHHHHHhhcc
Confidence 9999744 333333444456666777778999999999764 12233333332 222333333333332222
Q ss_pred CCCCchh-HHHHHHHHHHh--------cCChHHHHHHHhcCCC--Cc--------hhHHHHHHHHHHHcCChhHHHHHHH
Q 048578 159 DFNSVIH-SLTRLITFYCN--------FGDVKSAQLLFDQMTE--KN--------VVTWTAMINGHVKQKNYREGIDLFR 219 (519)
Q Consensus 159 ~~~~~~~-~~~~l~~~~~~--------~g~~~~A~~~~~~~~~--~~--------~~~~~~li~~~~~~~~~~~a~~~~~ 219 (519)
...+... ....+...+.. .|++++|..+|+.+.+ |+ ..++..+...+...|++++|...|+
T Consensus 188 ~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 267 (537)
T 3fp2_A 188 NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ 267 (537)
T ss_dssp SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 2222221 22233322222 2588999999998866 33 2357777788999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCh
Q 048578 220 KMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNV 296 (519)
Q Consensus 220 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~ 296 (519)
+..+. .|+...+..+...+...|+++.|...++.+.+.. +.+..++..+..++...|++++|...|+++.+ .+.
T Consensus 268 ~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 344 (537)
T 3fp2_A 268 ESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV 344 (537)
T ss_dssp HHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS
T ss_pred HHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Confidence 99886 4567888899999999999999999999999876 56788899999999999999999999998854 356
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCC----ChhHHHH
Q 048578 297 CTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEP----NVKHYGC 372 (519)
Q Consensus 297 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~ 372 (519)
..+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...|+++.+...-.+ ....+..
T Consensus 345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 423 (537)
T 3fp2_A 345 YPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIG 423 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHH
Confidence 789999999999999999999999998753 44566889999999999999999999999876321111 2223455
Q ss_pred HHHHHHhc----------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHH
Q 048578 373 LVDLLCRA----------RLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYV 440 (519)
Q Consensus 373 l~~~~~~~----------~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (519)
+...+... |++++|...|+++ ...| +...+..+...+.. .|++++|...++++.+..|.++....
T Consensus 424 ~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQ---MEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---hccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 56778888 9999999999998 4445 56788889999999 99999999999999999998765544
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=1.1e-18 Score=166.38 Aligned_cols=281 Identities=11% Similarity=-0.006 Sum_probs=223.6
Q ss_pred HHhcCChHHHHH-HHhcCCC--C-----chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 048578 174 YCNFGDVKSAQL-LFDQMTE--K-----NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGA 245 (519)
Q Consensus 174 ~~~~g~~~~A~~-~~~~~~~--~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 245 (519)
+.-.|++++|.. .|++... | +...+..+...+.+.|++++|...|+++.+.. +.+...+..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344578888888 8876654 1 34567888889999999999999999998864 4467788888888999999
Q ss_pred hHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHH---------------HHHHHH
Q 048578 246 SELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK---NVCTWNS---------------IIGGLA 307 (519)
Q Consensus 246 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~---------------l~~~~~ 307 (519)
++.|...++.+.+.. +.+..++..+..+|...|++++|.+.++++.+. +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 999999999998876 567788889999999999999999999887542 2222211 233344
Q ss_pred HcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 048578 308 IHGCGEEAVKMFWQMQMSGIK-PDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEA 386 (519)
Q Consensus 308 ~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 386 (519)
..|++++|...++++.+.... ++..++..+..++...|++++|...|+++.+. .+.+...|..++..+...|++++|
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 889999999999999875311 14789999999999999999999999999883 345678999999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC-----------CchHHHHHHHHHhcCCch
Q 048578 387 YEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN-----------DGNYVLMSNIYAAKAQWD 453 (519)
Q Consensus 387 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~ 453 (519)
...|+++ .+.| +...+..+...+.. .|++++|...++++++..|.+ ..+|..++.+|...|+++
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCIN---LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence 9999998 4455 56788889999999 999999999999999998877 789999999999999999
Q ss_pred HHHHHHHH
Q 048578 454 DAGKMRRL 461 (519)
Q Consensus 454 ~A~~~~~~ 461 (519)
+|..++++
T Consensus 348 ~A~~~~~~ 355 (368)
T 1fch_A 348 AYGAADAR 355 (368)
T ss_dssp GHHHHHTT
T ss_pred hHHHhHHH
Confidence 99998763
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=3.8e-18 Score=159.83 Aligned_cols=344 Identities=12% Similarity=0.051 Sum_probs=146.3
Q ss_pred CChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhC
Q 048578 79 SQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSK 158 (519)
Q Consensus 79 ~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 158 (519)
|++++|.+.++++..| .+|..+..++.+.|++++|++.|.+. +|..+|..++.++...|+.+++...+....
T Consensus 17 ~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 17 GNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 6667777777766433 36667777777777777777776432 455566666666666666555555443332
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048578 159 DFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLS 238 (519)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 238 (519)
...+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|..+|..+ ..|..+..
T Consensus 89 k~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~ 156 (449)
T 1b89_A 89 KKARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLAS 156 (449)
T ss_dssp --------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCHHHHHH
T ss_pred HhCccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHH
Confidence 233445667777777888888877776664 366667888888888888888888888766 26777777
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHH
Q 048578 239 ACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKM 318 (519)
Q Consensus 239 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 318 (519)
++.+.|+++.|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.....++..|.+.|++++|..+
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~l 229 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITM 229 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHH
Confidence 888888888887777776 256777788888888888888877666544 3444455678888888999999888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhc--cCcHHHHHHHHHHcHHhcCCCC------ChhHHHHHHHHHHhcCChHHHHHHH
Q 048578 319 FWQMQMSGIKPDDVTLIAVLTACSH--AGLIEKGKEIFYNMRRDYKVEP------NVKHYGCLVDLLCRARLLDEAYEVI 390 (519)
Q Consensus 319 ~~~m~~~g~~p~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~ 390 (519)
++...... +--...|+-+.-+|++ .+++.+.++.|. +..+++| +...|..+...|..-++++.|..+.
T Consensus 230 Le~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 230 LEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 88876543 3333455555444443 344444444443 3234544 4677889999999999999998766
Q ss_pred HhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 048578 391 RNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRL 461 (519)
Q Consensus 391 ~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (519)
-+- .|+..--..+.....+ ..+.+---+...--++.. |..++.|..++...=+...+.+++++
T Consensus 306 ~~h--~~~a~~~~~f~~~~~k---v~n~elyYkai~fyl~~~---p~~l~~ll~~l~~~ld~~r~v~~~~~ 368 (449)
T 1b89_A 306 MNH--PTDAWKEGQFKDIITK---VANVELYYRAIQFYLEFK---PLLLNDLLMVLSPRLDHTRAVNYFSK 368 (449)
T ss_dssp HHS--TTTTCCHHHHHHHHHH---CSSTHHHHHHHHHHHHHC---GGGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred HhC--ChhhhhhHHHHHHHhc---hhHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 553 1222222223333333 444444333333333333 33556666655544444444444433
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=1.8e-15 Score=151.62 Aligned_cols=395 Identities=9% Similarity=0.021 Sum_probs=285.6
Q ss_pred CCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHH
Q 048578 59 DNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN---PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYP 135 (519)
Q Consensus 59 ~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 135 (519)
|.+...|..++.. .+. |++++|..+|+++.+ .+...|..++..+.+.|++++|..+|+++... .|+...|.
T Consensus 10 P~~~~~w~~l~~~-~~~---~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~ 83 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQN---QPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWK 83 (530)
T ss_dssp TTCHHHHHHHHHH-HHS---SCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHH
T ss_pred CCCHHHHHHHHHH-HHh---CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHH
Confidence 4467788888874 566 999999999999854 35567889999999999999999999999985 36766666
Q ss_pred HHHHHH-cCccc---hH----HHHHHHHHhCCCCC-chhHHHHHHHHHHh---------cCChHHHHHHHhcCCC-Cch-
Q 048578 136 ILLKAC-GDLRQ---VK----GVHSLVVKSKDFNS-VIHSLTRLITFYCN---------FGDVKSAQLLFDQMTE-KNV- 195 (519)
Q Consensus 136 ~ll~~~-~~~~~---~~----~~~~~~~~~~~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~-~~~- 195 (519)
..+... ...|+ +. .+++...+..+..| +...|...+....+ .|+++.|..+|++..+ |..
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~ 163 (530)
T 2ooe_A 84 CYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMIN 163 (530)
T ss_dssp HHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTT
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhh
Confidence 655422 12232 32 24444444322443 56677777776654 7899999999999875 332
Q ss_pred --hHHHHHHHHH-------------HHcCChhHHHHHHHHHH------hCC---CCCC--------HHHHHHHHHHHhcc
Q 048578 196 --VTWTAMINGH-------------VKQKNYREGIDLFRKMR------DSG---VEVN--------ELTLVSVLSACANL 243 (519)
Q Consensus 196 --~~~~~li~~~-------------~~~~~~~~a~~~~~~m~------~~~---~~~~--------~~~~~~ll~~~~~~ 243 (519)
..|....... .+.+++..|..++.++. +.. ++|+ ...|...+......
T Consensus 164 ~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~ 243 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSN 243 (530)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcC
Confidence 2343322211 12355777777776532 221 2443 23454444433221
Q ss_pred ----CCh----HHHHHHHHHHHHcCCCcchhHHHHHHHHHHh-------cCCHH-------HHHHHHhhcCC---C-Chh
Q 048578 244 ----GAS----ELGKWVHEFVNKNCIILNDKLGAALTDMYAK-------CGYIE-------EALRVFKIVLE---K-NVC 297 (519)
Q Consensus 244 ----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~---~-~~~ 297 (519)
++. +.+..+|++..... +.+...|..++..+.+ .|+++ +|..+|++..+ | +..
T Consensus 244 ~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~ 322 (530)
T 2ooe_A 244 PLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML 322 (530)
T ss_dssp SSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH
T ss_pred CccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH
Confidence 233 36777888888864 5678888888888875 68877 89999998874 3 567
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHH
Q 048578 298 TWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDD--VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVD 375 (519)
Q Consensus 298 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 375 (519)
.|..++..+.+.|++++|..+|+++.+. .|+. ..|..++..+.+.|++++|..+|++..+. .+.+...|...+.
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~ 398 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAAL 398 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHH
Confidence 8999999999999999999999999984 5543 47888888899999999999999999873 2223333333222
Q ss_pred H-HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCc----hHHHHHHHHHh
Q 048578 376 L-LCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDG----NYVLMSNIYAA 448 (519)
Q Consensus 376 ~-~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~ 448 (519)
. +...|+.++|..+|++. ...| +...|..++..+.. .|+.++|..+|+++++..|.++. +|...+.....
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~---~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~ 475 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH---LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 475 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---TTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHh---CCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 2 34689999999999987 4445 56788899988888 99999999999999998877665 88888898899
Q ss_pred cCCchHHHHHHHHHHhCCC
Q 048578 449 KAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 449 ~g~~~~A~~~~~~m~~~~~ 467 (519)
.|+.+.+.++++++.+.-.
T Consensus 476 ~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 476 IGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp SSCHHHHHHHHHHHHHHTH
T ss_pred cCCHHHHHHHHHHHHHHCc
Confidence 9999999999999876543
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=5.4e-16 Score=153.84 Aligned_cols=373 Identities=12% Similarity=-0.030 Sum_probs=283.9
Q ss_pred CCCchhHHHHHHHHHhh-cCCCChHHHHHHHhcCCC-CCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCcc
Q 048578 59 DNRTISDTQLAKLIESL-VNSSQIAYAHLVFNQIIN-PSTFAFNTVIRGYAE----AGLGHRGIQLYTQMIGNGLDPDSF 132 (519)
Q Consensus 59 ~~~~~~~~~ll~~~~~~-~~~~~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~ 132 (519)
..++.....|...|..- +..+++++|...|+...+ .+..++..+...|.. .+++++|++.|++..+.| +..
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 112 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQ 112 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 44667777777777761 112899999999988743 567788888888988 899999999999999865 455
Q ss_pred hHHHHHHHHcC----ccchHHHHHHHHHhCCCCCchhHHHHHHHHHHh----cCChHHHHHHHhcCCC-CchhHHHHHHH
Q 048578 133 TYPILLKACGD----LRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCN----FGDVKSAQLLFDQMTE-KNVVTWTAMIN 203 (519)
Q Consensus 133 ~~~~ll~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~ 203 (519)
.+..+-..+.. .++.+++...+.+.. -.-+...+..+...|.. .++.++|...|++..+ .+..++..+..
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAA-EQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55556555655 566777777766554 23356677778888877 7899999999988754 56778888888
Q ss_pred HHHH----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCcchhHHHHHHHHH
Q 048578 204 GHVK----QKNYREGIDLFRKMRDSGVEVNELTLVSVLSACAN----LGASELGKWVHEFVNKNCIILNDKLGAALTDMY 275 (519)
Q Consensus 204 ~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (519)
.|.. .+++++|.+.|++..+.| +...+..+...+.. .+++++|...++...+.+ +...+..+..+|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 8888 899999999999988765 55667777777765 789999999999988765 345666677778
Q ss_pred Hh----cCCHHHHHHHHhhcCCC-ChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 048578 276 AK----CGYIEEALRVFKIVLEK-NVCTWNSIIGGLAIH-----GCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAG 345 (519)
Q Consensus 276 ~~----~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 345 (519)
.. .++.++|..+|++..+. +..++..+...+... +++++|..+|++..+.| +...+..+...|...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG 342 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence 77 88999999999888654 667777888888877 89999999999998865 4566777777777656
Q ss_pred ---cHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHcc-ccCCCC
Q 048578 346 ---LIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCR----ARLLDEAYEVIRNMPMEPNAVLWGSLLTACAS-ADDGAN 417 (519)
Q Consensus 346 ---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~ 417 (519)
+.++|...|++..+. .+...+..+...|.. .+++++|.+.|++.--..+...+..+...|.. .+-.++
T Consensus 343 ~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d 418 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERD 418 (490)
T ss_dssp CHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred CcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCC
Confidence 788999999998873 456788888888888 88999999999887112245666666666553 122579
Q ss_pred HHHHHHHHHHHHhhCCC---CCchHHHHHHHHHh
Q 048578 418 VELAEIAMERLIKLEPF---NDGNYVLMSNIYAA 448 (519)
Q Consensus 418 ~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 448 (519)
+++|...|+++.+.+|+ ++.+...++.++..
T Consensus 419 ~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 419 YVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 99999999999998844 66677766666554
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=6.3e-18 Score=161.14 Aligned_cols=259 Identities=10% Similarity=-0.066 Sum_probs=188.3
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHH
Q 048578 196 VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMY 275 (519)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (519)
..|..+...+.+.|++++|..+|+++.+.. +.+..++..+..++...|+++.|...++++.+.. +.+...+..+..+|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345566666666666666666666666543 2345566666666666666666666666666654 34456666666667
Q ss_pred HhcCCHHHHHHHHhhcCCCC-------------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q 048578 276 AKCGYIEEALRVFKIVLEKN-------------VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIK-PDDVTLIAVLTAC 341 (519)
Q Consensus 276 ~~~g~~~~a~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~l~~~~ 341 (519)
...|++++|...|+++.+.+ ...+..+...+...|++++|...++++.+.... ++..++..+...+
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 77777777777666664321 223344577888899999999999999875311 1577899999999
Q ss_pred hccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHH
Q 048578 342 SHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVE 419 (519)
Q Consensus 342 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~ 419 (519)
...|++++|...|+++.+. .+.+..+|..+..+|...|++++|.+.|+++ ...| +..++..+...+.. .|+++
T Consensus 224 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---~g~~~ 298 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCIN---LGAYR 298 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HTCCH
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH---CCCHH
Confidence 9999999999999999883 4556789999999999999999999999988 5455 47788889899999 99999
Q ss_pred HHHHHHHHHHhhCCC------------CCchHHHHHHHHHhcCCchHHHHHHHH
Q 048578 420 LAEIAMERLIKLEPF------------NDGNYVLMSNIYAAKAQWDDAGKMRRL 461 (519)
Q Consensus 420 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (519)
+|...++++++..|. +..+|..++.++...|+.+.|.++.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999998866 367899999999999999988887654
No 22
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=1.3e-16 Score=146.13 Aligned_cols=270 Identities=10% Similarity=-0.012 Sum_probs=215.2
Q ss_pred HHHHhcCChHHHHHHHhcCCCCch----hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChH
Q 048578 172 TFYCNFGDVKSAQLLFDQMTEKNV----VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASE 247 (519)
Q Consensus 172 ~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 247 (519)
+-....|+++.|+..++.....++ .....+.++|...|+++.|+..++. . -+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHH
Confidence 335567999999999988765332 3456678899999999999987654 2 3567778888888999999999
Q ss_pred HHHHHHHHHHHcCC-CcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 048578 248 LGKWVHEFVNKNCI-ILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSG 326 (519)
Q Consensus 248 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 326 (519)
.|...++.+...+. |.+...+..+..++...|++++|++.+++ ..+..++..++..+.+.|++++|.+.++++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 99999999988764 55677778888999999999999999998 567888999999999999999999999999875
Q ss_pred CCCCHHHH---HHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHH
Q 048578 327 IKPDDVTL---IAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVL 401 (519)
Q Consensus 327 ~~p~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~ 401 (519)
.|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.|++. ...| +..+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4554311 22334455669999999999999984 5678889999999999999999999999997 5556 5668
Q ss_pred HHHHHHHHccccCCCCHHH-HHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHH
Q 048578 402 WGSLLTACASADDGANVEL-AEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKM 458 (519)
Q Consensus 402 ~~~ll~~~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 458 (519)
+..++..+.. .|+.++ +.++++++.+.+|+++.+. ....+.+.++++..-
T Consensus 237 l~~l~~~~~~---~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 237 LINLVVLSQH---LGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHH---TTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---cCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHH
Confidence 8888888888 777765 6789999999999987554 345555555555543
No 23
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=8.3e-17 Score=159.04 Aligned_cols=369 Identities=11% Similarity=-0.057 Sum_probs=221.3
Q ss_pred CCchhHHHHHHHHHhhcCCCChHHHHHHHhcCC-----------C-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 048578 60 NRTISDTQLAKLIESLVNSSQIAYAHLVFNQII-----------N-PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGL 127 (519)
Q Consensus 60 ~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~-----------~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 127 (519)
.....|+.|..++... |++++|++.|++.. . ....+|+.+..+|...|++++|...+++..+..
T Consensus 49 ~~a~~yn~Lg~~~~~~---G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~- 124 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLK---GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC- 124 (472)
T ss_dssp -CCHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-
Confidence 3456788888888888 99999999887652 1 234678889999999999999999988876520
Q ss_pred CCCcchHHHHHHHHcCccchHHHHHHHHHhCC-C-CCchhHHHHHHHHHHh--cCChHHHHHHHhcCCC--C-chhHHHH
Q 048578 128 DPDSFTYPILLKACGDLRQVKGVHSLVVKSKD-F-NSVIHSLTRLITFYCN--FGDVKSAQLLFDQMTE--K-NVVTWTA 200 (519)
Q Consensus 128 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~--~-~~~~~~~ 200 (519)
.+..+ . .....++.....++.. .+++++|...|++..+ | ++..+..
T Consensus 125 ---------------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~ 177 (472)
T 4g1t_A 125 ---------------------------EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSG 177 (472)
T ss_dssp ---------------------------HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred ---------------------------HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 00000 0 1122334333333333 3457777777776644 3 3334443
Q ss_pred HHHH---HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh----ccCChHHHHHHHHHHHHcCCCcchhHHHHHHH
Q 048578 201 MING---HVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACA----NLGASELGKWVHEFVNKNCIILNDKLGAALTD 273 (519)
Q Consensus 201 li~~---~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 273 (519)
+..+ +...++.++|++.+++..+.. +.+...+..+...+. ..++.+.|...+++..... +.+..++..+..
T Consensus 178 ~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~ 255 (472)
T 4g1t_A 178 LAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAK 255 (472)
T ss_dssp HHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHH
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHH
Confidence 3333 344566677777777766543 223444444443333 3356677777777776654 455666777777
Q ss_pred HHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHH-------------------cCChHHHHHHHHHHHHCCCCCCH
Q 048578 274 MYAKCGYIEEALRVFKIVLE--K-NVCTWNSIIGGLAI-------------------HGCGEEAVKMFWQMQMSGIKPDD 331 (519)
Q Consensus 274 ~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~-------------------~g~~~~a~~~~~~m~~~g~~p~~ 331 (519)
.|...|++++|...+++..+ | +..++..+...|.. .+.++.|...+++..+.. +.+.
T Consensus 256 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 334 (472)
T 4g1t_A 256 FYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLF 334 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTC
T ss_pred HHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchh
Confidence 77777777777777777643 2 34445555444432 234567888888877643 3334
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCCh--hHHHHHHH-HHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 048578 332 VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNV--KHYGCLVD-LLCRARLLDEAYEVIRNM-PMEPNAVLWGSLLT 407 (519)
Q Consensus 332 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~ 407 (519)
.++..+...+...|++++|...|++..+. ...+.. ..+..+.. .+...|+.++|+..|++. .+.|+.....
T Consensus 335 ~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~---- 409 (472)
T 4g1t_A 335 RVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE---- 409 (472)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH----
T ss_pred hhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH----
Confidence 57788889999999999999999998872 322221 12333333 245678999999999887 6667654322
Q ss_pred HHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccE
Q 048578 408 ACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSV 475 (519)
Q Consensus 408 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 475 (519)
+..+.+.+++++.++.+|.++.+|..++.+|...|++++|.+.|++..+.+.......+|
T Consensus 410 --------~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 410 --------KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp --------HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred --------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 234556677888889999999999999999999999999999999998877654333434
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=6.9e-17 Score=153.99 Aligned_cols=278 Identities=12% Similarity=0.018 Sum_probs=182.2
Q ss_pred CChHHHHH-HHhcCCC-----C--CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHH
Q 048578 79 SQIAYAHL-VFNQIIN-----P--STFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGV 150 (519)
Q Consensus 79 ~~~~~A~~-~~~~~~~-----~--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~ 150 (519)
|++++|.. .|++... | +...+..+...+.+.|++++|+..|+++.+.
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------------------------- 93 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ------------------------- 93 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS-------------------------
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------------------------
Confidence 77888887 7776532 1 3566888888888999999999999888873
Q ss_pred HHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC
Q 048578 151 HSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE---KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVE 227 (519)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 227 (519)
.+.+...+..+..+|...|++++|...|+++.+ .+..++..+..++...|++++|...|+++......
T Consensus 94 ---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 164 (368)
T 1fch_A 94 ---------DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA 164 (368)
T ss_dssp ---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT
T ss_pred ---------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 223455666777788888888888888887754 45678888888899999999999999888876422
Q ss_pred CCHHHHHH---------------HHHHHhccCChHHHHHHHHHHHHcCCCc-chhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 048578 228 VNELTLVS---------------VLSACANLGASELGKWVHEFVNKNCIIL-NDKLGAALTDMYAKCGYIEEALRVFKIV 291 (519)
Q Consensus 228 ~~~~~~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 291 (519)
+...+.. .+..+...|+++.|...++.+.+..... +..++..+..+|...|++++|...|+++
T Consensus 165 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 243 (368)
T 1fch_A 165 -YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAA 243 (368)
T ss_dssp -TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1111111 1233336677777777777777654221 4666777777777777777777777666
Q ss_pred CC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCC----
Q 048578 292 LE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVE---- 364 (519)
Q Consensus 292 ~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---- 364 (519)
.+ .+..+|..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...|+++.+...-.
T Consensus 244 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 322 (368)
T 1fch_A 244 LSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR 322 (368)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC----
T ss_pred HHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcc
Confidence 33 245566777777777777777777777766542 3345567777777777777777777777665521100
Q ss_pred -----CChhHHHHHHHHHHhcCChHHHHHHHHh
Q 048578 365 -----PNVKHYGCLVDLLCRARLLDEAYEVIRN 392 (519)
Q Consensus 365 -----~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 392 (519)
....+|..+..+|...|++++|..++++
T Consensus 323 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 323 GEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp --CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred ccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 0145666777777777777777666653
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=2.3e-17 Score=154.38 Aligned_cols=257 Identities=11% Similarity=-0.054 Sum_probs=179.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHh
Q 048578 198 WTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAK 277 (519)
Q Consensus 198 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 277 (519)
+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|+++.|...++.+.+.. +.+..++..+..+|..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 3444444555555555555555544432 1234444444445555555555555555554443 3344455555555555
Q ss_pred cCCHHHHHHHHhhcCCC---ChhhHHHH--------------HH-HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048578 278 CGYIEEALRVFKIVLEK---NVCTWNSI--------------IG-GLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLT 339 (519)
Q Consensus 278 ~g~~~~a~~~~~~~~~~---~~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 339 (519)
.|++++|.+.++++.+. +...+..+ .. .+...|++++|...++++.+.. +.+...+..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 55555555555554321 11222222 22 3667789999999999988754 446778999999
Q ss_pred HHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCC
Q 048578 340 ACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGAN 417 (519)
Q Consensus 340 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~ 417 (519)
.+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++ ...| +..++..+...+.. .|+
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~---~g~ 255 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN---MSQ 255 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTC
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---hcc
Confidence 999999999999999999873 3456788999999999999999999999987 4444 56788888889999 999
Q ss_pred HHHHHHHHHHHHhhCCC------------CCchHHHHHHHHHhcCCchHHHHHHHHH
Q 048578 418 VELAEIAMERLIKLEPF------------NDGNYVLMSNIYAAKAQWDDAGKMRRLM 462 (519)
Q Consensus 418 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (519)
+++|...++++++..|. ++.++..++.++.+.|++++|..++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999998 6889999999999999999999988654
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=1e-14 Score=144.67 Aligned_cols=356 Identities=11% Similarity=0.012 Sum_probs=289.2
Q ss_pred CCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcC----ccchHHHHHHHHHhCCCCCch
Q 048578 93 NPSTFAFNTVIRGYAE----AGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGD----LRQVKGVHSLVVKSKDFNSVI 164 (519)
Q Consensus 93 ~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~~~~~~~~~~~~~~~~ 164 (519)
..+..++..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++.+++...+.+.. -..+.
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~~~ 111 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAA-LKGLP 111 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HCCCH
Confidence 3567777888888887 899999999999999864 45566666666665 677777777776654 23466
Q ss_pred hHHHHHHHHHHh----cCChHHHHHHHhcCCC-CchhHHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 048578 165 HSLTRLITFYCN----FGDVKSAQLLFDQMTE-KNVVTWTAMINGHVK----QKNYREGIDLFRKMRDSGVEVNELTLVS 235 (519)
Q Consensus 165 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 235 (519)
..+..+...|.. .+++++|...|++..+ .++.++..+...|.. .+++++|.+.|++..+.| +...+..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~ 188 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 777888888888 8899999999998765 466788888888887 889999999999998875 6778888
Q ss_pred HHHHHhc----cCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHh----cCCHHHHHHHHhhcCCC-ChhhHHHHHHHH
Q 048578 236 VLSACAN----LGASELGKWVHEFVNKNCIILNDKLGAALTDMYAK----CGYIEEALRVFKIVLEK-NVCTWNSIIGGL 306 (519)
Q Consensus 236 ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~ 306 (519)
+...+.. .++.++|...++...+.+ +...+..+...|.. .+++++|..+|++..+. +...+..+...+
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y 265 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYIL 265 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888877 899999999999999875 45677778888886 78999999999988654 667778888888
Q ss_pred HH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHH
Q 048578 307 AI----HGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHA-----GLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLL 377 (519)
Q Consensus 307 ~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (519)
.. .+++++|..+|++..+.| +...+..+...|... +++++|...|++..+. .+...+..+...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y 338 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIY 338 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHH
Confidence 88 899999999999998765 556777777788776 8999999999999883 3456778888888
Q ss_pred HhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHcc-ccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh----c
Q 048578 378 CRAR---LLDEAYEVIRNMPMEPNAVLWGSLLTACAS-ADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAA----K 449 (519)
Q Consensus 378 ~~~~---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~ 449 (519)
...| +.++|+++|++.-...+...+..+...|.. .+..+++++|...++++.+.+ ++.++..|+.+|.. .
T Consensus 339 ~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~ 416 (490)
T 2xm6_A 339 FRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVE 416 (490)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSC
T ss_pred HhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCC
Confidence 8866 889999999988112456667767666654 222579999999999998875 57899999999998 8
Q ss_pred CCchHHHHHHHHHHhCCC
Q 048578 450 AQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 450 g~~~~A~~~~~~m~~~~~ 467 (519)
+++++|...|++..+.+.
T Consensus 417 ~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 417 RDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHCCC
Confidence 999999999999998874
No 27
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=1.1e-14 Score=151.95 Aligned_cols=385 Identities=10% Similarity=0.052 Sum_probs=270.2
Q ss_pred CCcccHHHHHHhccCchHHHHHHHHHHHhcCC--CCchhHHHHHHHHHhhcCCCChHHHHHHHhcCC-CCC-----cchH
Q 048578 28 TKSHHHLPLLQKCTHLVQFKQVHAQIIKASFD--NRTISDTQLAKLIESLVNSSQIAYAHLVFNQII-NPS-----TFAF 99 (519)
Q Consensus 28 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~-~~~-----~~~~ 99 (519)
-|...|..+|.-... .-+++.++.....++ .++.-.+..++.|... |.+.+|+++++++. .|+ ...-
T Consensus 951 ~d~~lW~~vl~~~n~--~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~a---glp~EaieLLEKivl~~s~fs~n~~Lq 1025 (1630)
T 1xi4_A 951 KDPELWGSVLLESNP--YRRPLIDQVVQTALSETQDPEEVSVTVKAFMTA---DLPNELIELLEKIVLDNSVFSEHRNLQ 1025 (1630)
T ss_pred cCHHHHHHHhcCCcH--HHHHHHHHHHHhhcccccCHHHhHHHHHHHHhC---CCHHHHHHHHHHHHcCCCcccccHHHH
Confidence 466677777744321 114555555444433 3444456677888877 99999999998884 222 1223
Q ss_pred HHHH---------------------------HHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHH
Q 048578 100 NTVI---------------------------RGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHS 152 (519)
Q Consensus 100 ~~ll---------------------------~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~ 152 (519)
+.++ ..+...|.+++|..+|++... .....+.++. ..++.+++.+
T Consensus 1026 nlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE 1097 (1630)
T 1xi4_A 1026 NLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYE 1097 (1630)
T ss_pred HHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHH
Confidence 3333 345566777777777777521 1111222322 3444555555
Q ss_pred HHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH
Q 048578 153 LVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELT 232 (519)
Q Consensus 153 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 232 (519)
...+. .+..+|..+..++...|++++|...|.+. .|...|..++.++.+.|++++|.+.|...++.. ++...
T Consensus 1098 ~Aerv----n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~I 1169 (1630)
T 1xi4_A 1098 FAERC----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYV 1169 (1630)
T ss_pred HHHhc----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccc
Confidence 55443 23667888888888999999999988664 567778888899999999999999988777653 33333
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCh
Q 048578 233 LVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCG 312 (519)
Q Consensus 233 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 312 (519)
.+.++.+|++.++++....+. + .++...+..+...|...|++++|..+|..+ ..|..+...+.+.|++
T Consensus 1170 dt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~ 1237 (1630)
T 1xi4_A 1170 ETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEY 1237 (1630)
T ss_pred cHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCH
Confidence 345788888888887544432 2 345556667888899999999999999875 5888899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 048578 313 EEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRN 392 (519)
Q Consensus 313 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 392 (519)
++|.+.+++. .+..+|..+-.+|...|++..|......+. .++..+..++..|.+.|.+++|+.+++.
T Consensus 1238 q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1238 QAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred HHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999998876 355788888889999999888888665432 3566777899999999999999999988
Q ss_pred C-CCCCCH-HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCC-----CCCchHHHHHHHHHhcCCchHHHHH
Q 048578 393 M-PMEPNA-VLWGSLLTACASADDGANVELAEIAMERLIKLEP-----FNDGNYVLMSNIYAAKAQWDDAGKM 458 (519)
Q Consensus 393 ~-~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~ 458 (519)
. ++.|.. ..|.-+...+.+.+ .++..++.++|..-....| .+...|..+...|.+.|++++|...
T Consensus 1306 aL~LeraH~gmftELaiLyaKy~-peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1306 ALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HhccChhHhHHHHHHHHHHHhCC-HHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 7 666643 35655555565533 5667777777776655555 4788999999999999999999853
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=1.2e-16 Score=146.32 Aligned_cols=249 Identities=9% Similarity=0.038 Sum_probs=203.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcC
Q 048578 202 INGHVKQKNYREGIDLFRKMRDSGVEVNE--LTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCG 279 (519)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 279 (519)
++.....|++..|+..++..... .|+. .....+.+++...|+++.|...++. ..+|+...+..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 45567889999999999876543 4443 3556678899999999999876644 24677888999999999999
Q ss_pred CHHHHHHHHhhcCC----C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 048578 280 YIEEALRVFKIVLE----K-NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIF 354 (519)
Q Consensus 280 ~~~~a~~~~~~~~~----~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 354 (519)
+.++|++.++++.. | +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998742 3 556777788999999999999999987 457779999999999999999999999
Q ss_pred HHcHHhcCCCCChhHH---HHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHH
Q 048578 355 YNMRRDYKVEPNVKHY---GCLVDLLCRARLLDEAYEVIRNM--PMEPNAVLWGSLLTACASADDGANVELAEIAMERLI 429 (519)
Q Consensus 355 ~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~ 429 (519)
+++.+. .|+.... ..++..+...|++++|..+|+++ ..+.+...++.+..++.. .|++++|...+++++
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~---~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA---QGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHH
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHH
Confidence 999884 3543211 22334445569999999999998 333467789999999999 999999999999999
Q ss_pred hhCCCCCchHHHHHHHHHhcCCchH-HHHHHHHHHhCCCc
Q 048578 430 KLEPFNDGNYVLMSNIYAAKAQWDD-AGKMRRLMKERNIV 468 (519)
Q Consensus 430 ~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~~~ 468 (519)
+.+|+++.++..++.++...|+.++ +.++++++.+.+..
T Consensus 228 ~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 228 DKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred HhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999976 57899998875543
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=1.9e-18 Score=161.82 Aligned_cols=250 Identities=12% Similarity=0.093 Sum_probs=111.5
Q ss_pred hcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 048578 176 NFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEF 255 (519)
Q Consensus 176 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 255 (519)
+.|++++|.++++++..| .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 567889999999988555 48889999999999999999998652 5777888899999999999999998887
Q ss_pred HHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 048578 256 VNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLI 335 (519)
Q Consensus 256 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 335 (519)
.++. .+++.+.+.++.+|.+.|+++++.++++. |+..+|..+...|...|++++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 7774 45577888899999999999998887753 67778999999999999999999999876 3688
Q ss_pred HHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccCC
Q 048578 336 AVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDG 415 (519)
Q Consensus 336 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 415 (519)
.++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+...|+. ...++..|.+ .
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek---~ 220 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQD---R 220 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHH---T
T ss_pred HHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHH---C
Confidence 8999999999999999998877 26788999999999999999997666655444443 4467788888 8
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc--CCchHHHHHH
Q 048578 416 ANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAK--AQWDDAGKMR 459 (519)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~ 459 (519)
|.+++|..+++..+.+++.....|..|+.+|++- |++.+.++.|
T Consensus 221 G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 221 GYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp TCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8999999999999998888888999998888866 3444444443
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=2.1e-16 Score=150.56 Aligned_cols=233 Identities=12% Similarity=0.001 Sum_probs=196.3
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHH
Q 048578 229 NELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGG 305 (519)
Q Consensus 229 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~ 305 (519)
+...+..+...+.+.|+++.|..+++.+.+.. +.+..++..+..+|...|++++|+..|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44557888889999999999999999999886 66788999999999999999999999998854 467889999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHH
Q 048578 306 LAIHGCGEEAVKMFWQMQMSGIKPDD-----------VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLV 374 (519)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~~~g~~p~~-----------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 374 (519)
+...|++++|...++++.+. .|+. ..+..+...+...|++++|...|+++.+.....++..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999874 3332 2334557889999999999999999998432222688999999
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCc
Q 048578 375 DLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQW 452 (519)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 452 (519)
..|...|++++|.+.|+++ ...| +..+|..+...+.. .|++++|...++++++..|.++.++..++.+|.+.|++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN---GDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 9999999999999999998 4445 57789999999999 99999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCC
Q 048578 453 DDAGKMRRLMKERNI 467 (519)
Q Consensus 453 ~~A~~~~~~m~~~~~ 467 (519)
++|...+++..+...
T Consensus 298 ~~A~~~~~~al~~~~ 312 (365)
T 4eqf_A 298 REAVSNFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCc
Confidence 999999999986543
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=1.8e-14 Score=144.38 Aligned_cols=401 Identities=9% Similarity=-0.000 Sum_probs=279.2
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHH
Q 048578 94 PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITF 173 (519)
Q Consensus 94 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (519)
.+...|..++. +.+.|++++|..+|+++.+. .+-+...|...+..+.+.|+.+++...+.+.-...|+...|..++..
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSY 88 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 46778999998 47899999999999999984 33355578888888888899888888887776566777777777653
Q ss_pred -HHhcCChHHHHH----HHhcCCC------CchhHHHHHHHHHHH---------cCChhHHHHHHHHHHhCCCCCCHHHH
Q 048578 174 -YCNFGDVKSAQL----LFDQMTE------KNVVTWTAMINGHVK---------QKNYREGIDLFRKMRDSGVEVNELTL 233 (519)
Q Consensus 174 -~~~~g~~~~A~~----~~~~~~~------~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~~~~~~~ 233 (519)
....|+.++|.+ +|+.... ++...|...+..... .|++++|..+|++..+....+....|
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 345677777665 6665421 355678887776655 68899999999999873111112333
Q ss_pred HHHHHHH-------------hccCChHHHHHHHHHHH------HcC---CCcc--------hhHHHHHHHHHHhc----C
Q 048578 234 VSVLSAC-------------ANLGASELGKWVHEFVN------KNC---IILN--------DKLGAALTDMYAKC----G 279 (519)
Q Consensus 234 ~~ll~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~l~~~~~~~----g 279 (519)
....... ...++++.|..++.... +.. ++|+ ...|...+...... +
T Consensus 169 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~ 248 (530)
T 2ooe_A 169 RDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE 248 (530)
T ss_dssp HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred HHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCC
Confidence 3322211 12345666776666532 111 2333 23454444333221 2
Q ss_pred CH----HHHHHHHhhcCC---CChhhHHHHHHHHHH-------cCChH-------HHHHHHHHHHHCCCCCCHHHHHHHH
Q 048578 280 YI----EEALRVFKIVLE---KNVCTWNSIIGGLAI-------HGCGE-------EAVKMFWQMQMSGIKPDDVTLIAVL 338 (519)
Q Consensus 280 ~~----~~a~~~~~~~~~---~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~m~~~g~~p~~~~~~~l~ 338 (519)
+. +++..+|+++.. .+...|...+..+.+ .|+++ +|..++++..+.-.+-+...+..++
T Consensus 249 ~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~ 328 (530)
T 2ooe_A 249 DQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYA 328 (530)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 22 467778887754 367788888888776 69987 8999999988632233567899999
Q ss_pred HHHhccCcHHHHHHHHHHcHHhcCCCCC-h-hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH-Hcccc
Q 048578 339 TACSHAGLIEKGKEIFYNMRRDYKVEPN-V-KHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN-AVLWGSLLTA-CASAD 413 (519)
Q Consensus 339 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~-~~~~~~ll~~-~~~~~ 413 (519)
..+.+.|++++|..+|+++.+ .+|+ . ..|..++..+.+.|++++|.++|++. ...|+ ...+...... +..
T Consensus 329 ~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~-- 403 (530)
T 2ooe_A 329 DYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC-- 403 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH--
T ss_pred HHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH--
Confidence 999999999999999999987 2443 2 58999999999999999999999998 54443 2333322222 335
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc-cC-CcccEEEECCEEEEEEeCCCC
Q 048578 414 DGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIV-KN-PGCSVIEINDVVHEFMVGDGR 491 (519)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~ 491 (519)
.|+.++|..+|+++++..|+++..|..++..+.+.|+.++|..+|++....+.. |+ ....|. .++.-...
T Consensus 404 -~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~-------~~~~~e~~ 475 (530)
T 2ooe_A 404 -SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA-------RFLAFESN 475 (530)
T ss_dssp -TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHH-------HHHHHHHH
T ss_pred -cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHH-------HHHHHHHH
Confidence 789999999999999999999999999999999999999999999999887532 21 111120 00111123
Q ss_pred CCChhHHHHHHHHHHHHH
Q 048578 492 HPCSEEIYSMLEYVAISL 509 (519)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~ 509 (519)
+++.+.+..+..+.....
T Consensus 476 ~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 476 IGDLASILKVEKRRFTAF 493 (530)
T ss_dssp SSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHC
Confidence 566777777666665443
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=2.8e-16 Score=147.01 Aligned_cols=262 Identities=9% Similarity=0.004 Sum_probs=212.1
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCC---CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048578 163 VIHSLTRLITFYCNFGDVKSAQLLFDQMTE---KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSA 239 (519)
Q Consensus 163 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 239 (519)
+...+..+...+...|++++|..+|+++.+ .+..+|..+..++...|++++|...++++.+.. +.+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 345567778889999999999999998754 356788889999999999999999999998764 3467788888999
Q ss_pred HhccCChHHHHHHHHHHHHcCCCcchhHHHHH--------------HH-HHHhcCCHHHHHHHHhhcCC---CChhhHHH
Q 048578 240 CANLGASELGKWVHEFVNKNCIILNDKLGAAL--------------TD-MYAKCGYIEEALRVFKIVLE---KNVCTWNS 301 (519)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ 301 (519)
+...|+++.|...++.+.+.. +.+...+..+ .. .+...|++++|...++++.+ .+...+..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 999999999999999998864 2233333333 22 37788899999999988754 36778889
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcC
Q 048578 302 IIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRAR 381 (519)
Q Consensus 302 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (519)
+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...|+++.+. .+.+...+..+..+|...|
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998753 445678999999999999999999999999873 3456788999999999999
Q ss_pred ChHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhC
Q 048578 382 LLDEAYEVIRNM-PMEPN-------------AVLWGSLLTACASADDGANVELAEIAMERLIKLE 432 (519)
Q Consensus 382 ~~~~A~~~~~~~-~~~p~-------------~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~ 432 (519)
++++|.+.++++ ...|+ ...+..+..++.. .|++++|..+++++++..
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNV---MNRPDLVELTYAQNVEPF 316 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHH---TTCHHHHHHHTTCCSHHH
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhc
Confidence 999999999887 33344 5688888888999 999999999988766543
No 33
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.70 E-value=1.2e-13 Score=144.39 Aligned_cols=401 Identities=14% Similarity=0.073 Sum_probs=280.7
Q ss_pred chhhhhhhhhccccCCCCCCCCCcccHHHHHHhccCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHH
Q 048578 7 PNSQLTHFTNSANSHKNSNTATKSHHHLPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHL 86 (519)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~ 86 (519)
|..++..+..+... ++...-+...-+.++....+. +..++.+.+.+.+ ......+...+... |.+++|..
T Consensus 1001 p~EaieLLEKivl~--~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd----~~d~~eIA~Iai~l---glyEEAf~ 1070 (1630)
T 1xi4_A 1001 PNELIELLEKIVLD--NSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD----NYDAPDIANIAISN---ELFEEAFA 1070 (1630)
T ss_pred HHHHHHHHHHHHcC--CCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh----hccHHHHHHHHHhC---CCHHHHHH
Confidence 45566666666532 111112333344444333222 3344444444333 12244466677777 99999999
Q ss_pred HHhcCCCCCcchHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchh
Q 048578 87 VFNQIINPSTFAFNTVIRGYA-EAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIH 165 (519)
Q Consensus 87 ~~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (519)
+|++.. .+...+..+. ..+++++|.++.++. -++.+|..+-+++...|+.+++.+.+.+. .+..
T Consensus 1071 IYkKa~-----~~~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA----dD~s 1135 (1630)
T 1xi4_A 1071 IFRKFD-----VNTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPS 1135 (1630)
T ss_pred HHHHcC-----CHHHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc----CChH
Confidence 999974 2222233333 778899999998855 34678999999999999999998888775 3567
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC--CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 048578 166 SLTRLITFYCNFGDVKSAQLLFDQMTE--KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANL 243 (519)
Q Consensus 166 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 243 (519)
.|..++..+.+.|++++|.++|....+ +++...+.++.+|++.+++++...+. + .++...|..+...|...
T Consensus 1136 ay~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~e 1208 (1630)
T 1xi4_A 1136 SYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDE 1208 (1630)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhc
Confidence 788899999999999999999987654 34344456899999999988644332 2 34666777899999999
Q ss_pred CChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 048578 244 GASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQ 323 (519)
Q Consensus 244 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 323 (519)
|++++|..+|..+ ..|..+..+|.+.|++++|.+.+++. .+..+|..+..+|...|++..|......
T Consensus 1209 g~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~~cgl~-- 1275 (1630)
T 1xi4_A 1209 KMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLH-- 1275 (1630)
T ss_pred CCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHHHHHHh--
Confidence 9999999999985 37889999999999999999999987 5668899999999999998888876654
Q ss_pred HCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhc--CChHHHHHHHHhC-CCCC---
Q 048578 324 MSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRA--RLLDEAYEVIRNM-PMEP--- 397 (519)
Q Consensus 324 ~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~-~~~p--- 397 (519)
+..+...+..++..|.+.|.+++|+.+++....- . +-....|+-+..+|++- +++.++.+.|..- .+.|
T Consensus 1276 ---Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L-e-raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r 1350 (1630)
T 1xi4_A 1276 ---IVVHADELEELINYYQDRGYFEELITMLEAALGL-E-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLR 1350 (1630)
T ss_pred ---hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-C-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhH
Confidence 3445667778888999999999999999777651 1 33445666677776654 4566666666544 4433
Q ss_pred ---CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHh------------hCCCCCchHHHHHHHHHhcC------------
Q 048578 398 ---NAVLWGSLLTACASADDGANVELAEIAMERLIK------------LEPFNDGNYVLMSNIYAAKA------------ 450 (519)
Q Consensus 398 ---~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~------------~~p~~~~~~~~l~~~~~~~g------------ 450 (519)
+...|..++..|.+ .|+++.|...+-+-.. ..+.|+..|...+..|...+
T Consensus 1351 ~~e~~~lW~elv~LY~~---~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~ 1427 (1630)
T 1xi4_A 1351 AAEQAHLWAELVFLYDK---YEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLS 1427 (1630)
T ss_pred HHHHHHHHHHHHHHHHh---cccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHhh
Confidence 45678888888888 8888888843222211 13456777777777777666
Q ss_pred ---CchHHHHHHH
Q 048578 451 ---QWDDAGKMRR 460 (519)
Q Consensus 451 ---~~~~A~~~~~ 460 (519)
+.+.+.++|+
T Consensus 1428 ~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1428 PRLDHTRAVNYFS 1440 (1630)
T ss_pred hcCChHHHHHHHH
Confidence 6666666665
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=4.8e-15 Score=133.38 Aligned_cols=230 Identities=11% Similarity=-0.016 Sum_probs=157.3
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHH
Q 048578 196 VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMY 275 (519)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (519)
..|..+...+...|++++|...|++..+.. .+...+..+..++...|+++.|...++.+.+......
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----------- 72 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR----------- 72 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc-----------
Confidence 345556666666666666666666665554 4555555555555555666666555555544220000
Q ss_pred HhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 048578 276 AKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFY 355 (519)
Q Consensus 276 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 355 (519)
.+.. ....++..+...+...|++++|...++++.+. .|+. ..+...|++++|...++
T Consensus 73 ---~~~~-----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~ 129 (258)
T 3uq3_A 73 ---ADYK-----------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAE 129 (258)
T ss_dssp ---CCHH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHH
T ss_pred ---cchH-----------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHH
Confidence 0000 00345666677777777777777777777663 3443 34555677888888888
Q ss_pred HcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCC
Q 048578 356 NMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEP 433 (519)
Q Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p 433 (519)
.+.. ..+.+...+..+...+...|++++|...+++. ...| +...+..+...+.. .|++++|...++++++.+|
T Consensus 130 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 130 AEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK---LMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCT
T ss_pred HHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHhCH
Confidence 8776 33345667778888888888888888888887 3334 56678888888888 8899999999999999998
Q ss_pred CCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 434 FNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 434 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
.++.++..++.+|.+.|++++|.+.+++..+..
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 888889999999999999999999988887644
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.68 E-value=2.4e-15 Score=131.55 Aligned_cols=196 Identities=12% Similarity=0.011 Sum_probs=153.0
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048578 262 ILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK---NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVL 338 (519)
Q Consensus 262 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 338 (519)
|++...+..+...+.+.|++++|...|++..+. +...+..+...+.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 456667777888888888888888888877542 56778888888899999999999999988753 33456888888
Q ss_pred HHHhcc-----------CcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 048578 339 TACSHA-----------GLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAVLWGSLL 406 (519)
Q Consensus 339 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll 406 (519)
.++... |++++|+..|++..+. .+.+...+..+..+|...|++++|+..|++. .+..+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 888888 9999999999999883 3446788899999999999999999999988 2226788888999
Q ss_pred HHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 407 TACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
..+.. .|++++|...++++++.+|+++.++..++.++.+.|++++|.+.+++..
T Consensus 159 ~~~~~---~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLS---MGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHH---HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHH---cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999 9999999999999999999999999999999999999999999998754
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=3.1e-15 Score=134.67 Aligned_cols=234 Identities=10% Similarity=0.000 Sum_probs=154.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC--CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCC--CCC----HHHHHH
Q 048578 164 IHSLTRLITFYCNFGDVKSAQLLFDQMTE--KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGV--EVN----ELTLVS 235 (519)
Q Consensus 164 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~~~~~~ 235 (519)
...+..+...+...|++++|...|++..+ .+...|..+..++...|++++|...+++..+... .++ ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 56788899999999999999999988744 6778899999999999999999999999876521 112 466777
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHH
Q 048578 236 VLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEA 315 (519)
Q Consensus 236 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 315 (519)
+...+...|+++.|...++.+.+.. |+. .. +...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~-------------------------------~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DI-------------------------------LTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HH-------------------------------HHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HH-------------------------------HHHHhHHHHH
Confidence 7777777888888888777777654 221 12 3334445555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 048578 316 VKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-P 394 (519)
Q Consensus 316 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~ 394 (519)
...++++.... +.+...+..+...+...|++++|...|+++.+. .+.+...|..+..+|...|++++|...+++. .
T Consensus 125 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 125 LKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55555555431 112235555666666666666666666666552 2334556666666666666666666666665 3
Q ss_pred CCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhC------CCCCchHHHHH
Q 048578 395 MEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLE------PFNDGNYVLMS 443 (519)
Q Consensus 395 ~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~ 443 (519)
..| +...+..+...+.. .|++++|...++++.+.. |.+...+..+.
T Consensus 202 ~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIA---VKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 333 34556666666666 677777777777777666 55544444443
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=3.7e-16 Score=158.00 Aligned_cols=114 Identities=10% Similarity=0.044 Sum_probs=89.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHH
Q 048578 297 CTWNSIIGGLAIHGCGEEAVKMFWQMQM---SGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCL 373 (519)
Q Consensus 297 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 373 (519)
.+|+++|.+|++.|++++|.++|++|.+ .|+.||..||++||.+|++.|++++|.++|++|.+ .|+.||..||+++
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~-~G~~PDvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-AGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCcHHHHHHH
Confidence 4788888888888888888888877653 46788888888888888888888888888888877 4888888888888
Q ss_pred HHHHHhcCCh-HHHHHHHHhC---CCCCCHHHHHHHHHHHcc
Q 048578 374 VDLLCRARLL-DEAYEVIRNM---PMEPNAVLWGSLLTACAS 411 (519)
Q Consensus 374 ~~~~~~~~~~-~~A~~~~~~~---~~~p~~~~~~~ll~~~~~ 411 (519)
|.++++.|+. ++|.++|++| |+.||..+|++++.++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 8888888774 6777888888 888888888877655444
No 38
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.65 E-value=1.7e-16 Score=160.44 Aligned_cols=123 Identities=12% Similarity=0.128 Sum_probs=110.8
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcCC-------CCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 048578 162 SVIHSLTRLITFYCNFGDVKSAQLLFDQMT-------EKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLV 234 (519)
Q Consensus 162 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 234 (519)
....+|+++|++||+.|++++|.++|+.|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 345689999999999999999999997763 4899999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCh-HHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHH
Q 048578 235 SVLSACANLGAS-ELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEA 284 (519)
Q Consensus 235 ~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 284 (519)
++|.++++.|+. +.|.+++++|.+.|+.||..+|+.++....+.+-++.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V 255 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH
Confidence 999999999985 78999999999999999999999998776665433333
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64 E-value=2.1e-14 Score=130.62 Aligned_cols=241 Identities=11% Similarity=-0.056 Sum_probs=177.3
Q ss_pred HcCChhHHHHHHHHHHhCCCC---CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHH
Q 048578 207 KQKNYREGIDLFRKMRDSGVE---VNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEE 283 (519)
Q Consensus 207 ~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 283 (519)
..|++++|+..|+++.+.... .+..++..+...+...|+++.|...++.+.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346677777777777765321 134566667777777777777777777777764 4466777778888888888888
Q ss_pred HHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHh
Q 048578 284 ALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRD 360 (519)
Q Consensus 284 a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 360 (519)
|...|+++.+ .+..++..+...+...|++++|...++++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888877744 35677888888899999999999999998874 455555555555667779999999999888773
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 361 YKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN-----AVLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
.+++...+. ++..+...++.++|.+.+++. ...|+ ...+..+...+.. .|++++|...++++++.+|.
T Consensus 174 --~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 174 --SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLS---LGDLDSATALFKLAVANNVH 247 (275)
T ss_dssp --SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHTTCCT
T ss_pred --CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHH---cCCHHHHHHHHHHHHhCCch
Confidence 344444444 677778888889999998887 44442 4677888888999 99999999999999999987
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHH
Q 048578 435 NDGNYVLMSNIYAAKAQWDDAGKMR 459 (519)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (519)
+... ...++...|++++|.+.+
T Consensus 248 ~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 NFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TCHH---HHHHHHHHHHHHHC----
T ss_pred hHHH---HHHHHHHHHHHHhhHHHH
Confidence 6444 466788889999988776
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=3.3e-14 Score=129.11 Aligned_cols=242 Identities=11% Similarity=-0.012 Sum_probs=125.3
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCc--chhHHHHHHHHHHhcC
Q 048578 202 INGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIIL--NDKLGAALTDMYAKCG 279 (519)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g 279 (519)
...+...|++++|+..|++..+... .+...+..+..++...|+++.|...++.+.+.+..+ ....+..+..++...|
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 3344444444444444444443321 122233344444444444444444444444421111 1112444445555555
Q ss_pred CHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 048578 280 YIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYN 356 (519)
Q Consensus 280 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 356 (519)
++++|+..|++..+ .+..+|..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|...|++
T Consensus 89 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 167 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVK 167 (272)
T ss_dssp CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555544422 234455555555666666666666666555431 22334455554233333466677776666
Q ss_pred cHHhcCCCCChhHHHHHHHHHHhcCC---hHHHHHHHHhC----CCCCC------HHHHHHHHHHHccccCCCCHHHHHH
Q 048578 357 MRRDYKVEPNVKHYGCLVDLLCRARL---LDEAYEVIRNM----PMEPN------AVLWGSLLTACASADDGANVELAEI 423 (519)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~----~~~p~------~~~~~~ll~~~~~~~~~~~~~~a~~ 423 (519)
+.+. .+.+...+..+..++...|+ +++|...+++. ...|+ ..++..+...+.. .|++++|..
T Consensus 168 a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~ 242 (272)
T 3u4t_A 168 VLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI---NRDKVKADA 242 (272)
T ss_dssp HHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH---TTCHHHHHH
T ss_pred HHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH---cCCHHHHHH
Confidence 6652 22335555666666666666 55566666555 11233 1456667777888 889999999
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHhcC
Q 048578 424 AMERLIKLEPFNDGNYVLMSNIYAAKA 450 (519)
Q Consensus 424 ~~~~~~~~~p~~~~~~~~l~~~~~~~g 450 (519)
.++++++.+|+++.++..+.......+
T Consensus 243 ~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 243 AWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 999999999988887777766655443
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.59 E-value=1.2e-13 Score=120.69 Aligned_cols=192 Identities=13% Similarity=-0.011 Sum_probs=93.7
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHH
Q 048578 196 VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMY 275 (519)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (519)
..+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|...++...+.. |.+...+..+..++
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 344445555555555555555555554432 2234444445555555555555555555555443 33344444445555
Q ss_pred Hhc-----------CCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048578 276 AKC-----------GYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTAC 341 (519)
Q Consensus 276 ~~~-----------g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 341 (519)
... |++++|+..|++..+ .+...+..+...+...|++++|+..|++..+.. .+...+..+..++
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~ 161 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELY 161 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHH
Confidence 444 555555555555432 234455555555666666666666666655544 4555555666666
Q ss_pred hccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 048578 342 SHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM 393 (519)
Q Consensus 342 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 393 (519)
...|++++|...|++..+. .+.+...+..+..++...|++++|.+.+++.
T Consensus 162 ~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666552 2334455555566666666666666555543
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=7e-13 Score=118.80 Aligned_cols=207 Identities=14% Similarity=-0.047 Sum_probs=119.4
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHH
Q 048578 195 VVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDM 274 (519)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 274 (519)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~----------- 103 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SR----------- 103 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cC-----------
Confidence 4456666666777777777777777666542 2234455555555555555555555555555432 11
Q ss_pred HHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHH
Q 048578 275 YAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPD-DVTLIAVLTACSHAGLIEKGKEI 353 (519)
Q Consensus 275 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 353 (519)
+...+..+...+...|++++|..+++++.+.+..|+ ...+..+..++...|++++|...
T Consensus 104 --------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 104 --------------------NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 233444445555555555555555555554223333 33555666666666666666666
Q ss_pred HHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhh
Q 048578 354 FYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKL 431 (519)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 431 (519)
++++.+. .+.+...+..++..+...|++++|...++++ ...| +...+..+...+.. .|++++|.+.++++.+.
T Consensus 164 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 164 FEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKV---FEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHH
Confidence 6666652 2334556666666666667777776666665 3333 34455555556666 66777777777777777
Q ss_pred CCCCCchH
Q 048578 432 EPFNDGNY 439 (519)
Q Consensus 432 ~p~~~~~~ 439 (519)
.|.++...
T Consensus 239 ~p~~~~~~ 246 (252)
T 2ho1_A 239 YPGSLEYQ 246 (252)
T ss_dssp CTTSHHHH
T ss_pred CCCCHHHH
Confidence 76654443
No 43
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.58 E-value=2.6e-12 Score=126.65 Aligned_cols=308 Identities=10% Similarity=-0.066 Sum_probs=218.2
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 048578 95 STFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFY 174 (519)
Q Consensus 95 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 174 (519)
....||.+...+...|++++|++.|++..+. ..........+....+|+.+..+|
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~-------------------------~~~~~~~~~~~~~~~~~~nla~~y 104 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEEL-------------------------IQQEHADQAEIRSLVTWGNYAWVY 104 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------HHHHSGGGCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------------------------HHhcCccccchHHHHHHHHHHHHH
Confidence 3567999999999999999999999988651 000000000223456788899999
Q ss_pred HhcCChHHHHHHHhcCCC-----------CchhHHHHHHHHHHHc--CChhHHHHHHHHHHhCCCCCC-HHHHHHHHHH-
Q 048578 175 CNFGDVKSAQLLFDQMTE-----------KNVVTWTAMINGHVKQ--KNYREGIDLFRKMRDSGVEVN-ELTLVSVLSA- 239 (519)
Q Consensus 175 ~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~- 239 (519)
...|++++|...+++..+ ....++..+..++... +++++|...|++..+.. |+ ...+..+..+
T Consensus 105 ~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~ 182 (472)
T 4g1t_A 105 YHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIAS 182 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 999999999998877642 1234666666566554 57999999999998763 43 4444444444
Q ss_pred --HhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHh----cCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcC
Q 048578 240 --CANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAK----CGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHG 310 (519)
Q Consensus 240 --~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g 310 (519)
+...++.+.|...+++..+.+ +.+..++..+...+.. .|++++|.+.+++... .+..++..+...+...|
T Consensus 183 ~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 261 (472)
T 4g1t_A 183 YRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKD 261 (472)
T ss_dssp HHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT
T ss_pred HHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcC
Confidence 345677888999999888875 4556666666555544 4677889999987643 46678889999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-------------------CcHHHHHHHHHHcHHhcCCCCChhHHH
Q 048578 311 CGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHA-------------------GLIEKGKEIFYNMRRDYKVEPNVKHYG 371 (519)
Q Consensus 311 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~ 371 (519)
++++|...+++..+.. +-+..++..+..+|... +..+.|...+++..+. .+.+...+.
T Consensus 262 ~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~ 338 (472)
T 4g1t_A 262 EPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCS 338 (472)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHH
T ss_pred chHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhh
Confidence 9999999999998753 33455666666555432 3466788888887763 344566788
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCCHHH----HHHHHHH-HccccCCCCHHHHHHHHHHHHhhCCCCC
Q 048578 372 CLVDLLCRARLLDEAYEVIRNM-PMEPNAVL----WGSLLTA-CASADDGANVELAEIAMERLIKLEPFND 436 (519)
Q Consensus 372 ~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~----~~~ll~~-~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (519)
.+...|...|++++|.+.|++. .+.|+... +..+... ... .|++++|+..+++++++.|.+.
T Consensus 339 ~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ai~~y~kal~i~~~~~ 406 (472)
T 4g1t_A 339 ILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQ---MKCEDKAIHHFIEGVKINQKSR 406 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT---SSCHHHHHHHHHHHHHSCCCCH
T ss_pred hHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHhcCcccH
Confidence 8999999999999999999987 55555432 2222222 334 7899999999999999999853
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=4.2e-13 Score=121.80 Aligned_cols=239 Identities=8% Similarity=-0.032 Sum_probs=191.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC--C-chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHH
Q 048578 165 HSLTRLITFYCNFGDVKSAQLLFDQMTE--K-NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVN--ELTLVSVLSA 239 (519)
Q Consensus 165 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~ 239 (519)
..+......+...|++++|...|++..+ | +...+..+..++...|++++|+..+++..+.+..++ ...|..+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3455667788999999999999998855 3 455888999999999999999999999988432222 3458888999
Q ss_pred HhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHH
Q 048578 240 CANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK---NVCTWNSIIGGLAIHGCGEEAV 316 (519)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~ 316 (519)
+...|+++.|...++...+.. +.+..++..+..+|...|++++|...|++..+. +...|..+...+...+++++|.
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999976 556789999999999999999999999999763 5566777773455567999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCc---HHHHHHHHHHcHHhcCCCCC------hhHHHHHHHHHHhcCChHHHH
Q 048578 317 KMFWQMQMSGIKPDDVTLIAVLTACSHAGL---IEKGKEIFYNMRRDYKVEPN------VKHYGCLVDLLCRARLLDEAY 387 (519)
Q Consensus 317 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~ 387 (519)
..|+++.+.. +.+...+..+..++...|+ +++|...+++..+...-.|+ ...|..+...|...|++++|.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999998753 3346688888888888888 88899998888774333344 257888999999999999999
Q ss_pred HHHHhC-CCCCCHH-HHHHH
Q 048578 388 EVIRNM-PMEPNAV-LWGSL 405 (519)
Q Consensus 388 ~~~~~~-~~~p~~~-~~~~l 405 (519)
+.+++. .+.|+.. .+..+
T Consensus 242 ~~~~~al~~~p~~~~a~~~l 261 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHhcCccHHHHHHHh
Confidence 999998 5566543 44333
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.57 E-value=1.7e-13 Score=129.79 Aligned_cols=250 Identities=10% Similarity=-0.001 Sum_probs=178.9
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC-hHHHHHHHHHHHHcCCCcchhHHHHHHH
Q 048578 195 VVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGA-SELGKWVHEFVNKNCIILNDKLGAALTD 273 (519)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 273 (519)
...|+.+..++.+.|++++|+..|++..... +-+...|..+..++...|+ +++|...++++.+.+ +.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3456677777777788888888887777653 2245667777777777775 778877777777765 456677777777
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCcHHH
Q 048578 274 MYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSH-AGLIEK 349 (519)
Q Consensus 274 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~g~~~~ 349 (519)
++...|++++|+..|+++.+ .+..+|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 77777888888777777744 356778888888888888888888888887753 3355678888888877 555466
Q ss_pred H-----HHHHHHcHHhcCCCCChhHHHHHHHHHHhcC--ChHHHHHHHHhCCCCC-CHHHHHHHHHHHccccCC-----C
Q 048578 350 G-----KEIFYNMRRDYKVEPNVKHYGCLVDLLCRAR--LLDEAYEVIRNMPMEP-NAVLWGSLLTACASADDG-----A 416 (519)
Q Consensus 350 a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~-----~ 416 (519)
| +..|++..+. .+-+...|..+..++...| ++++|++.+.++...| +...+..+...+...++. +
T Consensus 254 A~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 6 4777777762 3345677888888888877 5788888887774445 456677777777662100 2
Q ss_pred C-HHHHHHHHHHH-HhhCCCCCchHHHHHHHHHhc
Q 048578 417 N-VELAEIAMERL-IKLEPFNDGNYVLMSNIYAAK 449 (519)
Q Consensus 417 ~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 449 (519)
+ +++|.++++++ .+.+|.....|..++..+...
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 3 58899999998 888998888888887766543
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.57 E-value=8.6e-14 Score=123.95 Aligned_cols=142 Identities=14% Similarity=0.020 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHH
Q 048578 297 CTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDL 376 (519)
Q Consensus 297 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (519)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~ 168 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMC 168 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHH
Confidence 334444444444555555555555544432 223344555555555555555555555555442 22334445555555
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 048578 377 LCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSN 444 (519)
Q Consensus 377 ~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (519)
+...|++++|.+.++++ ...| +..++..+...+.. .|++++|...++++.+.+|+++.++..+..
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 169 LANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAY---KENREKALEMLDKAIDIQPDHMLALHAKKL 235 (243)
T ss_dssp HHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCTTHHHHHHHHHHHHCTTCHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH---ccCHHHHHHHHHHHHccCcchHHHHHHHHH
Confidence 55555555555555554 2222 34445555555555 555555555555555555555544444433
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=5.9e-13 Score=116.83 Aligned_cols=195 Identities=10% Similarity=-0.030 Sum_probs=111.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048578 265 DKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTAC 341 (519)
Q Consensus 265 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 341 (519)
...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 33444445555555555555555544422 234455555555666666666666666655432 23444566666666
Q ss_pred hcc-CcHHHHHHHHHHcHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCC
Q 048578 342 SHA-GLIEKGKEIFYNMRRDYKVEP-NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGAN 417 (519)
Q Consensus 342 ~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~ 417 (519)
... |++++|...++++.+ .+..| +...+..+..++...|++++|.+.++++ ...| +...+..+...+.. .|+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~ 162 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKML---AGQ 162 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH---HTC
T ss_pred HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH---cCC
Confidence 666 666666666666655 22222 2445556666666666666666666655 2233 34555556666666 666
Q ss_pred HHHHHHHHHHHHhhCC-CCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 418 VELAEIAMERLIKLEP-FNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 418 ~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
+++|...++++.+..| .++..+..++..+...|+.++|..+++.+.+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666666666666 6666666666666666666666666666654
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.56 E-value=1.6e-13 Score=130.02 Aligned_cols=229 Identities=10% Similarity=0.007 Sum_probs=195.0
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCC-HHHHHHHHhhcCC---CChhhHHHHHHH
Q 048578 230 ELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGY-IEEALRVFKIVLE---KNVCTWNSIIGG 305 (519)
Q Consensus 230 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~---~~~~~~~~l~~~ 305 (519)
...|..+..++.+.|+++.|...++.+++.. +-+...|..+..++...|+ +++|+..|+++.+ .+..+|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3567777788889999999999999999986 6678899999999999997 9999999999865 367889999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHh-cCChH
Q 048578 306 LAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCR-ARLLD 384 (519)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 384 (519)
+...|++++|+..|+++++.. +-+...|..+..++...|++++|+..|+++.+. -+.+...|+.+..++.. .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999998853 446679999999999999999999999999983 34567899999999999 66658
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHccccCCC--CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC-----
Q 048578 385 EA-----YEVIRNM-PMEP-NAVLWGSLLTACASADDGA--NVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKA----- 450 (519)
Q Consensus 385 ~A-----~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----- 450 (519)
+| ++.|++. .+.| +...|..+...+.. .| ++++|.+.++++ +.+|+++.++..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~---~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD---RGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT---TCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHc---cCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccccc
Confidence 87 4777776 5566 45678888888887 66 689999999998 888999999999999999875
Q ss_pred ----CchHHHHHHHHH-HhCC
Q 048578 451 ----QWDDAGKMRRLM-KERN 466 (519)
Q Consensus 451 ----~~~~A~~~~~~m-~~~~ 466 (519)
.+++|.++++++ .+.+
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKD 349 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHhC
Confidence 358999999998 5543
No 49
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.56 E-value=4.1e-14 Score=136.92 Aligned_cols=262 Identities=13% Similarity=-0.009 Sum_probs=167.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHc----C-CCcchhHHHH
Q 048578 200 AMINGHVKQKNYREGIDLFRKMRDSGVEVNE----LTLVSVLSACANLGASELGKWVHEFVNKN----C-IILNDKLGAA 270 (519)
Q Consensus 200 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 270 (519)
.+...+...|++++|...|++..+.+.. +. ..+..+...+...|+++.|...+++..+. + .+.....+..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3444555555555555555555544211 11 24444555555555555555555554432 1 1223345555
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCC---------ChhhHHHHHHHHHHcCC-----------------hHHHHHHHHHHHH
Q 048578 271 LTDMYAKCGYIEEALRVFKIVLEK---------NVCTWNSIIGGLAIHGC-----------------GEEAVKMFWQMQM 324 (519)
Q Consensus 271 l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~~m~~ 324 (519)
+...|...|++++|...+++..+- ...++..+...+...|+ +++|+..+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 666666666666666666554321 22356666677777777 7777777776543
Q ss_pred C----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 048578 325 S----GIKPD-DVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN----VKHYGCLVDLLCRARLLDEAYEVIRNM-P 394 (519)
Q Consensus 325 ~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~-~ 394 (519)
. +-.+. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+++. .
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1 11122 236777888888889999998888887662111111 236778888899999999999888876 1
Q ss_pred CC---CC----HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC------CCchHHHHHHHHHhcCCchHHHHHHHH
Q 048578 395 ME---PN----AVLWGSLLTACASADDGANVELAEIAMERLIKLEPF------NDGNYVLMSNIYAAKAQWDDAGKMRRL 461 (519)
Q Consensus 395 ~~---p~----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (519)
+. .+ ..++..+...+.. .|++++|...++++++..+. ...++..++.+|.+.|++++|.+.+++
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTL---LHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 11 11 3567777778888 89999999999998876533 234888899999999999999999998
Q ss_pred HHhC
Q 048578 462 MKER 465 (519)
Q Consensus 462 m~~~ 465 (519)
..+.
T Consensus 369 al~~ 372 (411)
T 4a1s_A 369 HLQL 372 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8654
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=7.3e-14 Score=124.43 Aligned_cols=198 Identities=12% Similarity=0.064 Sum_probs=155.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048578 264 NDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTA 340 (519)
Q Consensus 264 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 340 (519)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 445566677777888888888888887754 356778888889999999999999999988753 4467789999999
Q ss_pred HhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCH
Q 048578 341 CSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANV 418 (519)
Q Consensus 341 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~ 418 (519)
+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++ ...| +...+..+...+.. .|++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~ 175 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN---EGML 175 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HTCC
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---cCCH
Confidence 99999999999999999883 3456788999999999999999999999988 4344 57788888888999 9999
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 419 ELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 419 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
++|...++++.+..|.++.++..++.+|...|++++|.+.+++..+...
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 9999999999999999999999999999999999999999999987543
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=8.9e-13 Score=118.14 Aligned_cols=194 Identities=11% Similarity=-0.025 Sum_probs=141.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048578 164 IHSLTRLITFYCNFGDVKSAQLLFDQMTE---KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSAC 240 (519)
Q Consensus 164 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 240 (519)
...+..+...+...|++++|...|+++.+ .+...+..+..++...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 57788899999999999999999998764 467789999999999999999999999998764 33667788888888
Q ss_pred hccCChHHHHHHHHHHHHcCC-CcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHH
Q 048578 241 ANLGASELGKWVHEFVNKNCI-ILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAV 316 (519)
Q Consensus 241 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~ 316 (519)
...|++++|..+++.+.+.+. +.+...+..+..++...|++++|...++++.+ .+...+..+...+...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 888999999988888877322 33455666667777777777777777666532 24455666666666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHH
Q 048578 317 KMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRR 359 (519)
Q Consensus 317 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (519)
..++++.+.. +.+...+..+...+...|++++|..+++.+.+
T Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6666665432 33444555666666666666666666666655
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.56 E-value=1.3e-12 Score=114.69 Aligned_cols=209 Identities=11% Similarity=-0.044 Sum_probs=131.7
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHH
Q 048578 195 VVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDM 274 (519)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 274 (519)
...|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|+++.|...++.+.+.. +
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~------------ 73 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-P------------ 73 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-C------------
Confidence 3455555666666666666666666655542 2234444445555555555555555555544432 1
Q ss_pred HHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHH
Q 048578 275 YAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIH-GCGEEAVKMFWQMQMSGIKPD-DVTLIAVLTACSHAGLIEKGKE 352 (519)
Q Consensus 275 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~ 352 (519)
.+..++..+...+... |++++|...++++.+.+..|+ ...+..+..++...|++++|..
T Consensus 74 -------------------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 74 -------------------DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp -------------------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -------------------CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 2344555566666666 777777777777665323343 3467777777777888888888
Q ss_pred HHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC--CHHHHHHHHHHHccccCCCCHHHHHHHHHHHH
Q 048578 353 IFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP--NAVLWGSLLTACASADDGANVELAEIAMERLI 429 (519)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p--~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~ 429 (519)
.++++.+. .+.+...+..++.++...|++++|.+.++++ ...| +...+..+...+.. .|+.+.+..+++.+.
T Consensus 135 ~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 135 YLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKA---LGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh---cCcHHHHHHHHHHHH
Confidence 88777762 2334667777788888888888888888776 3233 45556666666677 788888888888888
Q ss_pred hhCCCCCchHHH
Q 048578 430 KLEPFNDGNYVL 441 (519)
Q Consensus 430 ~~~p~~~~~~~~ 441 (519)
+..|+++.....
T Consensus 210 ~~~p~~~~~~~~ 221 (225)
T 2vq2_A 210 ANFPYSEELQTV 221 (225)
T ss_dssp HHCTTCHHHHHH
T ss_pred HhCCCCHHHHHH
Confidence 888877655543
No 53
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.55 E-value=1.7e-13 Score=133.92 Aligned_cols=371 Identities=11% Similarity=0.017 Sum_probs=190.4
Q ss_pred cCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCCh---HHHHHHHhcCCCCCcchHHHHHHHHHhcC-----Ch
Q 048578 41 THLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQI---AYAHLVFNQIINPSTFAFNTVIRGYAEAG-----LG 112 (519)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~ll~~~~~~g-----~~ 112 (519)
.+...+.+.++...+.| ++..+..|..+|... |+. ++|...|++..+.++..+..+...+...+ ++
T Consensus 17 g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~---g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~ 90 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAELG---YSEAQVGLADIQVGT---RDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEH 90 (452)
T ss_dssp HHHHHHHHHHHHHHHHT---CCTGGGTCC-------------------------------CHHHHHHHHHTC--CCHHHH
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCH
Confidence 34444455555555554 233334444455444 444 66666666665445555555555444444 55
Q ss_pred hHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHH---HHHHHhc
Q 048578 113 HRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKS---AQLLFDQ 189 (519)
Q Consensus 113 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~ 189 (519)
++|+..|++..+.|... .+ ..|...|...+..++ +.+.+..
T Consensus 91 ~~A~~~~~~Aa~~g~~~---A~---------------------------------~~Lg~~y~~~~~~~~~~~a~~~~~~ 134 (452)
T 3e4b_A 91 HEAESLLKKAFANGEGN---TL---------------------------------IPLAMLYLQYPHSFPNVNAQQQISQ 134 (452)
T ss_dssp HHHHHHHHHHHHTTCSS---CH---------------------------------HHHHHHHHHCGGGCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHH---HH---------------------------------HHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 66666666666644221 22 223333332222211 2222222
Q ss_pred CCC-CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC---ChHHHHHHHHHHHHcCCCcch
Q 048578 190 MTE-KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLG---ASELGKWVHEFVNKNCIILND 265 (519)
Q Consensus 190 ~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~ 265 (519)
... .++..+..+...|...+.++++......+.+.-...++..+..+...|...| +.++|...++...+.| +++.
T Consensus 135 a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a 213 (452)
T 3e4b_A 135 WQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTA 213 (452)
T ss_dssp HHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCH
T ss_pred HHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHH
Confidence 211 2344455555555555544333333222221111112225555555555566 6666666666666655 3344
Q ss_pred hHHHHHHHHHHhc----CCHHHHHHHHhhcCCCChhhHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048578 266 KLGAALTDMYAKC----GYIEEALRVFKIVLEKNVCTWNSIIGG-L--AIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVL 338 (519)
Q Consensus 266 ~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 338 (519)
..+..+..+|... +++++|..+|++....++..+..+... + ...+++++|..+|++..+.| +...+..+.
T Consensus 214 ~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg 290 (452)
T 3e4b_A 214 QRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLG 290 (452)
T ss_dssp HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 4444555555444 577777777777663355666666665 3 45788888888888888766 556666666
Q ss_pred HHHhccC-----cHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048578 339 TACSHAG-----LIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCR----ARLLDEAYEVIRNMPMEPNAVLWGSLLTAC 409 (519)
Q Consensus 339 ~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 409 (519)
..|. .| ++++|...|++.. +-+...+..|...|.. ..++++|..+|++.--.-+......|...|
T Consensus 291 ~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y 364 (452)
T 3e4b_A 291 KLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLF 364 (452)
T ss_dssp HHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred HHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 6666 45 8888888888775 3456677777777766 348888998888871111223334444444
Q ss_pred cc-ccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH--HhcCCchHHHHHHHHHHhC
Q 048578 410 AS-ADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIY--AAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 410 ~~-~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~~ 465 (519)
.. .+-..+.++|..+++++.+.++.+ +...+..+. ...++.++|.++.++-+..
T Consensus 365 ~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 365 SQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 32 111458999999999988887543 333333332 2334667777777766543
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.54 E-value=2.1e-13 Score=131.50 Aligned_cols=269 Identities=12% Similarity=0.036 Sum_probs=127.5
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-c----hhHHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCC-CH
Q 048578 163 VIHSLTRLITFYCNFGDVKSAQLLFDQMTE--K-N----VVTWTAMINGHVKQKNYREGIDLFRKMRDS----GVEV-NE 230 (519)
Q Consensus 163 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~ 230 (519)
....+......+...|++++|...|++..+ | + ...|..+...+...|++++|...+++.... +-.| ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344455566667777777777777766543 2 2 235666666777777777777777665432 1111 12
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCC-----CcchhHHHHHHHHHHhcCC--------------------HHHHH
Q 048578 231 LTLVSVLSACANLGASELGKWVHEFVNKNCI-----ILNDKLGAALTDMYAKCGY--------------------IEEAL 285 (519)
Q Consensus 231 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~--------------------~~~a~ 285 (519)
.++..+...+...|+++.|...++...+... .....++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 3455555566666666666666666554210 0112345555555555555 55555
Q ss_pred HHHhhcCC-----C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHhccCcHHHHH
Q 048578 286 RVFKIVLE-----K----NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSG-IKPD----DVTLIAVLTACSHAGLIEKGK 351 (519)
Q Consensus 286 ~~~~~~~~-----~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-~~p~----~~~~~~l~~~~~~~g~~~~a~ 351 (519)
..+++..+ . ...++..+...+...|++++|...+++..+.. -.++ ..++..+...+...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 55544321 0 11234444444555555555555555443210 0011 114444444455555555555
Q ss_pred HHHHHcHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHccccCCCCHH
Q 048578 352 EIFYNMRRDYKVEPN----VKHYGCLVDLLCRARLLDEAYEVIRNM----PMEPN----AVLWGSLLTACASADDGANVE 419 (519)
Q Consensus 352 ~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~~~~~~~~ 419 (519)
..+++..+...-.++ ..++..+...|...|++++|.+.+++. ...++ ..++..+...+.. .|+++
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~ 324 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTA---LGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---HTCHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH---cCCHH
Confidence 555444331000000 233444444455555555555554444 11111 2233334444444 44455
Q ss_pred HHHHHHHHHHhhCCC
Q 048578 420 LAEIAMERLIKLEPF 434 (519)
Q Consensus 420 ~a~~~~~~~~~~~p~ 434 (519)
+|...++++++..+.
T Consensus 325 ~A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 325 QAMHFAEKHLEISRE 339 (406)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555554444443
No 55
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.54 E-value=8.8e-14 Score=130.20 Aligned_cols=263 Identities=14% Similarity=0.009 Sum_probs=174.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHc----CC-CcchhHHHH
Q 048578 200 AMINGHVKQKNYREGIDLFRKMRDSGVEVN----ELTLVSVLSACANLGASELGKWVHEFVNKN----CI-ILNDKLGAA 270 (519)
Q Consensus 200 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ 270 (519)
.....+...|++++|...|+++.+.... + ...+..+...+...|+++.|...++...+. +. +....++..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3444555666666666666666554211 2 234555555566666666666666554432 11 122445566
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHHcCC--------------------hHHHHHHHHH
Q 048578 271 LTDMYAKCGYIEEALRVFKIVLE-----KN----VCTWNSIIGGLAIHGC--------------------GEEAVKMFWQ 321 (519)
Q Consensus 271 l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~ 321 (519)
+...|...|++++|...+++..+ .+ ..++..+...+...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 66677777777777777666532 11 2356667777777777 7888877777
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHh
Q 048578 322 MQMS----GIKPD-DVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN----VKHYGCLVDLLCRARLLDEAYEVIRN 392 (519)
Q Consensus 322 m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~ 392 (519)
.... +..|. ...+..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|.+.+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5431 11121 236778888889999999999999887652111111 33778888999999999999999887
Q ss_pred C-CC---CCC----HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC------CchHHHHHHHHHhcCCchHHHHH
Q 048578 393 M-PM---EPN----AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN------DGNYVLMSNIYAAKAQWDDAGKM 458 (519)
Q Consensus 393 ~-~~---~p~----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~ 458 (519)
. .+ .++ ..++..+...+.. .|++++|...++++++..+.. ..++..++.+|.+.|++++|.+.
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTL---LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 6 11 112 4467777778888 999999999999998765432 44788999999999999999999
Q ss_pred HHHHHhCC
Q 048578 459 RRLMKERN 466 (519)
Q Consensus 459 ~~~m~~~~ 466 (519)
+++..+..
T Consensus 326 ~~~a~~~~ 333 (338)
T 3ro2_A 326 AEKHLEIS 333 (338)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 99987643
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.53 E-value=6.2e-12 Score=114.17 Aligned_cols=231 Identities=9% Similarity=-0.047 Sum_probs=125.5
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCcchhHHH
Q 048578 194 NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACAN----LGASELGKWVHEFVNKNCIILNDKLGA 269 (519)
Q Consensus 194 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 269 (519)
++.++..+...+...|++++|...|++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44556666666667777777777776666532 33455555555555 666666666666655543 334444
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cC
Q 048578 270 ALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSH----AG 345 (519)
Q Consensus 270 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g 345 (519)
.+..+|.... ...+++++|+..|++..+.+ +...+..+...|.. .+
T Consensus 79 ~lg~~~~~g~---------------------------~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~ 128 (273)
T 1ouv_A 79 LLGNLYYSGQ---------------------------GVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTR 128 (273)
T ss_dssp HHHHHHHHTS---------------------------SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCC
T ss_pred HHHHHHhCCC---------------------------CcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCccc
Confidence 4444444400 00455555555555554433 34445555555555 55
Q ss_pred cHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHcc-ccCCCCHH
Q 048578 346 LIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCR----ARLLDEAYEVIRNM-PMEPNAVLWGSLLTACAS-ADDGANVE 419 (519)
Q Consensus 346 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~-~~~~~~~~ 419 (519)
++++|...|++..+. + +...+..+...|.. .+++++|...|++. .. .+...+..+...+.. .+..++++
T Consensus 129 ~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~~~~~ 203 (273)
T 1ouv_A 129 DFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-KDSPGCFNAGNMYHHGEGATKNFK 203 (273)
T ss_dssp CHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred CHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCccHH
Confidence 555555555555541 2 33444455555555 55555555555554 11 123333333333322 11145677
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHHhCCC
Q 048578 420 LAEIAMERLIKLEPFNDGNYVLMSNIYAA----KAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 420 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 467 (519)
+|...++++.+.+| +.++..++.+|.. .+++++|.+.+++..+.|.
T Consensus 204 ~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 204 EALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 77777777766654 4566677777777 7777777777777766554
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.53 E-value=6.6e-12 Score=114.00 Aligned_cols=218 Identities=10% Similarity=-0.055 Sum_probs=147.0
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcCCCC-chhHHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 048578 162 SVIHSLTRLITFYCNFGDVKSAQLLFDQMTEK-NVVTWTAMINGHVK----QKNYREGIDLFRKMRDSGVEVNELTLVSV 236 (519)
Q Consensus 162 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 236 (519)
-+...+..+...|...|++++|...|++..++ +..++..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 35667888899999999999999999988764 56678889999999 999999999999999876 67888888
Q ss_pred HHHHhc----cCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHh----cCCHHHHHHHHhhcCCC-ChhhHHHHHHHHH
Q 048578 237 LSACAN----LGASELGKWVHEFVNKNCIILNDKLGAALTDMYAK----CGYIEEALRVFKIVLEK-NVCTWNSIIGGLA 307 (519)
Q Consensus 237 l~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~ 307 (519)
...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|+..|++..+. +..++..+...+.
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 888988 999999999999988865 45566666666666 66666666666655432 3444555555555
Q ss_pred H----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHh
Q 048578 308 I----HGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSH----AGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCR 379 (519)
Q Consensus 308 ~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (519)
. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+. + +...+..+..+|..
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-E---NGGGCFNLGAMQYN 230 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHT
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC-C---CHHHHHHHHHHHHc
Confidence 5 555555555555555432 33444455555555 55555555555555441 1 13344444444444
Q ss_pred ----cCChHHHHHHHHh
Q 048578 380 ----ARLLDEAYEVIRN 392 (519)
Q Consensus 380 ----~~~~~~A~~~~~~ 392 (519)
.+++++|.+.|++
T Consensus 231 g~~~~~~~~~A~~~~~~ 247 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKK 247 (273)
T ss_dssp TSSSSCCSTTHHHHHHH
T ss_pred CCCcccCHHHHHHHHHH
Confidence 4444444444444
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.52 E-value=1.1e-12 Score=111.34 Aligned_cols=167 Identities=16% Similarity=0.075 Sum_probs=141.7
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHH
Q 048578 295 NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLV 374 (519)
Q Consensus 295 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 374 (519)
+...|..+...+...|++++|+..|++..+.. +-+..++..+..++.+.|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 56678888888899999999999999988753 335568888899999999999999999998873 345567778888
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCc
Q 048578 375 DLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQW 452 (519)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 452 (519)
..+...++++.|.+.+.+. ...| +...+..+...+.. .|++++|++.++++++.+|.++.+|..++.+|.+.|++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS---MGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH---hCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence 8899999999999999887 4445 56678888888888 99999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCC
Q 048578 453 DDAGKMRRLMKERNI 467 (519)
Q Consensus 453 ~~A~~~~~~m~~~~~ 467 (519)
++|.+.|++..+.+.
T Consensus 158 ~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 158 DEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHhCCc
Confidence 999999999887543
No 59
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.51 E-value=1.5e-11 Score=120.01 Aligned_cols=332 Identities=10% Similarity=0.021 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcC--CCChHHHHHHHhcCCC-CCcchHHHHHHHHHhcCChhHHHHHHHH
Q 048578 45 QFKQVHAQIIKASFDNRTISDTQLAKLIESLVN--SSQIAYAHLVFNQIIN-PSTFAFNTVIRGYAEAGLGHRGIQLYTQ 121 (519)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 121 (519)
.+...++...+. ++..+..|..++..... .+++++|...|++... .+..++..+...|...+..+++.+.++.
T Consensus 56 ~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~ 131 (452)
T 3e4b_A 56 QAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQ 131 (452)
T ss_dssp -------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHH
T ss_pred HHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 444555544433 56666677765555411 1278899999988754 3455777788877766554433333222
Q ss_pred HHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcC----ChHHHHHHHhcCCCCchhH
Q 048578 122 MIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFG----DVKSAQLLFDQMTEKNVVT 197 (519)
Q Consensus 122 m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~ 197 (519)
+... .. ..+......+...|...+ +.+++..+++.....++.+
T Consensus 132 ~~~a-----------------------------~~----~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a 178 (452)
T 3e4b_A 132 ISQW-----------------------------QA----AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDIC 178 (452)
T ss_dssp HHHH-----------------------------HH----HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTH
T ss_pred HHHH-----------------------------HH----CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHH
Confidence 2221 00 112233444445555555 3444555666666666668
Q ss_pred HHHHHHHHHHcC---ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc----CChHHHHHHHHHHHHcCCCcchhHHHH
Q 048578 198 WTAMINGHVKQK---NYREGIDLFRKMRDSGVEVNELTLVSVLSACANL----GASELGKWVHEFVNKNCIILNDKLGAA 270 (519)
Q Consensus 198 ~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~ 270 (519)
+..|...|...| +.++|++.|++..+.| .++...+..+...|... +++++|...|+... +-++..+..
T Consensus 179 ~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa----~g~~~a~~~ 253 (452)
T 3e4b_A 179 YVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA----PGYPASWVS 253 (452)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG----GGSTHHHHH
T ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc----CCCHHHHHH
Confidence 888888888888 8888888888888776 44555545566666554 68888888888876 334555666
Q ss_pred HHHH-H--HhcCCHHHHHHHHhhcCCC-ChhhHHHHHHHHHHcC-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048578 271 LTDM-Y--AKCGYIEEALRVFKIVLEK-NVCTWNSIIGGLAIHG-----CGEEAVKMFWQMQMSGIKPDDVTLIAVLTAC 341 (519)
Q Consensus 271 l~~~-~--~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g-----~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 341 (519)
+..+ | ...+++++|..+|++..+. +..++..+...|. .| ++++|..+|++.. .| +......|...|
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y 328 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIY 328 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHH
Confidence 6665 3 4578888888888887654 5667777777776 55 8888988888877 33 555666666666
Q ss_pred hc----cCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHcc
Q 048578 342 SH----AGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCR----ARLLDEAYEVIRNM-PM-EPNAVLWGSLLTACAS 411 (519)
Q Consensus 342 ~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~ 411 (519)
.. ..++++|...|++..+. | +......|..+|.. ..+.++|..+|+.. .. .++.......+.....
T Consensus 329 ~~G~g~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~ 404 (452)
T 3e4b_A 329 RRGYLGKVYPQKALDHLLTAARN-G---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLT 404 (452)
T ss_dssp HTTTTSSCCHHHHHHHHHHHHTT-T---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCC
T ss_pred HCCCCCCcCHHHHHHHHHHHHhh-C---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 55 34889999999888772 3 34455666777664 45788888888877 21 2222222222222222
Q ss_pred ccCCCCHHHHHHHHHHHHh
Q 048578 412 ADDGANVELAEIAMERLIK 430 (519)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~ 430 (519)
.++.++|..+.++-.+
T Consensus 405 ---~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 405 ---PAQRAEGQRLVQQELA 420 (452)
T ss_dssp ---HHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHH
Confidence 4456666666666544
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=1.6e-13 Score=132.29 Aligned_cols=267 Identities=13% Similarity=0.013 Sum_probs=188.3
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHc----CC-Ccc
Q 048578 194 NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVN----ELTLVSVLSACANLGASELGKWVHEFVNKN----CI-ILN 264 (519)
Q Consensus 194 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~ 264 (519)
....+......+...|++++|...|++..+.+.. + ...+..+...+...|+++.|...+++.... +. +..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3445666777888888888888888888776322 2 246677777888888888888888876543 21 223
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHHcCC--------------------hHHH
Q 048578 265 DKLGAALTDMYAKCGYIEEALRVFKIVLE-----KN----VCTWNSIIGGLAIHGC--------------------GEEA 315 (519)
Q Consensus 265 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~--------------------~~~a 315 (519)
..++..+...|...|++++|...+++..+ .+ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 55677788888888888888888877643 12 3467777788888888 8888
Q ss_pred HHHHHHHHH----CCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC----hhHHHHHHHHHHhcCChHHH
Q 048578 316 VKMFWQMQM----SGIKPD-DVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN----VKHYGCLVDLLCRARLLDEA 386 (519)
Q Consensus 316 ~~~~~~m~~----~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A 386 (519)
...+++..+ .+..|. ..++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 888877643 121222 236777788888888888888888877652111122 23677888888888888888
Q ss_pred HHHHHhC-CC---CCC----HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC------CchHHHHHHHHHhcCCc
Q 048578 387 YEVIRNM-PM---EPN----AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN------DGNYVLMSNIYAAKAQW 452 (519)
Q Consensus 387 ~~~~~~~-~~---~p~----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~ 452 (519)
...+++. .+ .++ ..++..+...+.. .|++++|...++++.+..+.. ..++..++.+|...|++
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL---LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHH---hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 8888776 11 112 3466677777887 888888888888888764332 55788888888888888
Q ss_pred hHHHHHHHHHHh
Q 048578 453 DDAGKMRRLMKE 464 (519)
Q Consensus 453 ~~A~~~~~~m~~ 464 (519)
++|.+.+++..+
T Consensus 324 ~~A~~~~~~al~ 335 (406)
T 3sf4_A 324 DQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888877643
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.50 E-value=1.6e-13 Score=134.84 Aligned_cols=193 Identities=9% Similarity=-0.050 Sum_probs=157.0
Q ss_pred cchhHHHHHHHHHHhcCCH-HHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048578 263 LNDKLGAALTDMYAKCGYI-EEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVL 338 (519)
Q Consensus 263 ~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 338 (519)
.+...+..+..+|...|++ ++|++.|++..+ .+..+|..+...|...|++++|...|++..+. .|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 3445555555555566666 666666655532 24567788888888889999999999988874 57778888899
Q ss_pred HHHhcc---------CcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhc--------CChHHHHHHHHhC-CCCC---
Q 048578 339 TACSHA---------GLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRA--------RLLDEAYEVIRNM-PMEP--- 397 (519)
Q Consensus 339 ~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~~-~~~p--- 397 (519)
.++... |++++|...|++..+. .+.+...|..+..+|... |++++|++.|++. .+.|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 999998 9999999999999883 345678899999999998 9999999999988 5556
Q ss_pred -CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 048578 398 -NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLM 462 (519)
Q Consensus 398 -~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (519)
+...|..+...+.. .|++++|...++++++.+|+++.++..++.++...|++++|.+.++++
T Consensus 256 ~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 256 SNPDLHLNRATLHKY---EESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 67788889999999 999999999999999999999999999999999999999999755443
No 62
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.50 E-value=4.8e-13 Score=121.52 Aligned_cols=218 Identities=13% Similarity=0.009 Sum_probs=177.9
Q ss_pred hccCChHHHHHHHHHHHHcCC---CcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHH
Q 048578 241 ANLGASELGKWVHEFVNKNCI---ILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEE 314 (519)
Q Consensus 241 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~ 314 (519)
...|++++|...++.+.+... +.+..++..+..++...|++++|...|+++.+ .+..+|..+...+...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 345789999999999988642 23567888999999999999999999998854 367889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 048578 315 AVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM- 393 (519)
Q Consensus 315 a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 393 (519)
|...++++.+.. +.+...+..+..++...|++++|...|+++.+. .|+.......+..+...|++++|...+++.
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999998753 335678999999999999999999999999873 344444445555667789999999999776
Q ss_pred -CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC----CCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 394 -PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF----NDGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 394 -~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
...++...+ .++..+.. .++.++|...++++.+..|. ++..+..++.+|.+.|++++|...+++..+.+
T Consensus 172 ~~~~~~~~~~-~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 172 EKSDKEQWGW-NIVEFYLG---NISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHSCCCSTHH-HHHHHHTT---SSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hcCCcchHHH-HHHHHHHH---hcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 223333344 36666777 77889999999998877653 36889999999999999999999999998765
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.46 E-value=2.3e-12 Score=123.34 Aligned_cols=285 Identities=9% Similarity=-0.018 Sum_probs=197.8
Q ss_pred HHhcCChHHHHHHHhcCCC--------CchhHHHHHHHH--HHHcCChhHHH-----------HHHHHHHhCCCCCCHHH
Q 048578 174 YCNFGDVKSAQLLFDQMTE--------KNVVTWTAMING--HVKQKNYREGI-----------DLFRKMRDSGVEVNELT 232 (519)
Q Consensus 174 ~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~--~~~~~~~~~a~-----------~~~~~m~~~~~~~~~~~ 232 (519)
+.+.+++++|..+++++.+ ++...|..++.. ....++.+.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 4577888888888877643 233334444332 22223333444 5666654421 11111
Q ss_pred H------HHHHHHHhccCChHHHHHHHHHHHHc----CCCc-chhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC-
Q 048578 233 L------VSVLSACANLGASELGKWVHEFVNKN----CIIL-NDKLGAALTDMYAKCGYIEEALRVFKIVLE-----KN- 295 (519)
Q Consensus 233 ~------~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~- 295 (519)
+ ......+...|+++.|...+++..+. +.++ ...++..+..+|...|++++|...+.+..+ ++
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 1 12455577889999999999998764 2122 356788889999999999999988887643 11
Q ss_pred ----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHcHHh---cCC
Q 048578 296 ----VCTWNSIIGGLAIHGCGEEAVKMFWQMQMS----GIKPD-DVTLIAVLTACSHAGLIEKGKEIFYNMRRD---YKV 363 (519)
Q Consensus 296 ----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~ 363 (519)
..+++.+...|...|++++|+..+++..+. +-.+. ..++..+..+|...|++++|...+++..+. .+.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 346788889999999999999999987642 11111 137888999999999999999999988761 123
Q ss_pred -CCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHccccCCCC---HHHHHHHHHHHHhhC
Q 048578 364 -EPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PM-----EPN-AVLWGSLLTACASADDGAN---VELAEIAMERLIKLE 432 (519)
Q Consensus 364 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~-----~p~-~~~~~~ll~~~~~~~~~~~---~~~a~~~~~~~~~~~ 432 (519)
+....++..+...|.+.|++++|.+.+++. .+ .|. ...+..+...+.. .|+ +++|..++++. ...
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~al~~~~~~-~~~ 335 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLS---GPDEEAIQGFFDFLESK-MLY 335 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTS---SCCHHHHHHHHHHHHHT-TCH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHC-cCH
Confidence 334667888999999999999999999887 11 222 2235556666777 777 77777777765 222
Q ss_pred CCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 433 PFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 433 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
|....++..++.+|...|++++|...+++..+
T Consensus 336 ~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 336 ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44456888999999999999999999999864
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.46 E-value=9.9e-13 Score=127.17 Aligned_cols=268 Identities=12% Similarity=0.013 Sum_probs=206.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC--Cc-h----hHHHHHHHHHHHcCChhHHHHHHHHHHhC----CC-CCCHH
Q 048578 164 IHSLTRLITFYCNFGDVKSAQLLFDQMTE--KN-V----VTWTAMINGHVKQKNYREGIDLFRKMRDS----GV-EVNEL 231 (519)
Q Consensus 164 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~ 231 (519)
...+..+...+...|++++|...|++..+ |+ . ..|..+...|...|++++|...+++..+. +- .....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 33455667788999999999999998765 32 2 46888899999999999999999887653 11 22345
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcC-----CCcchhHHHHHHHHHHhcCC-----------------HHHHHHHHh
Q 048578 232 TLVSVLSACANLGASELGKWVHEFVNKNC-----IILNDKLGAALTDMYAKCGY-----------------IEEALRVFK 289 (519)
Q Consensus 232 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~ 289 (519)
.+..+...+...|+++.|...+++..+.. .+....++..+...|...|+ +++|.+.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 67778888999999999999998877642 13345578888999999999 999999888
Q ss_pred hcCC-----C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHH
Q 048578 290 IVLE-----K----NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGI-KPD----DVTLIAVLTACSHAGLIEKGKEIFY 355 (519)
Q Consensus 290 ~~~~-----~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~ 355 (519)
+..+ . ...++..+...+...|++++|...+++..+... .++ ...+..+..++...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 7643 1 234778888999999999999999999865310 112 2378888999999999999999999
Q ss_pred HcHHhcCCC----CChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHccccCCCCHHHHHH
Q 048578 356 NMRRDYKVE----PNVKHYGCLVDLLCRARLLDEAYEVIRNM-------PMEP-NAVLWGSLLTACASADDGANVELAEI 423 (519)
Q Consensus 356 ~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~ 423 (519)
+..+...-. ....++..+...|...|++++|.+.+++. +..+ ...++..+...+.. .|++++|..
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~ 364 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA---IGGHERALK 364 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---TTCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH---hccHHHHHH
Confidence 887631111 12467888999999999999999999887 1111 13467778888888 999999999
Q ss_pred HHHHHHhhCCC
Q 048578 424 AMERLIKLEPF 434 (519)
Q Consensus 424 ~~~~~~~~~p~ 434 (519)
.++++.++.+.
T Consensus 365 ~~~~al~~~~~ 375 (411)
T 4a1s_A 365 YAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHCCH
T ss_pred HHHHHHHHHhh
Confidence 99999988754
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.44 E-value=4.4e-11 Score=110.58 Aligned_cols=218 Identities=8% Similarity=-0.039 Sum_probs=133.1
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-------ccCCh-------HHHHHHHHHHHHcCCCcchhHHHHHHHHHHh
Q 048578 212 REGIDLFRKMRDSGVEVNELTLVSVLSACA-------NLGAS-------ELGKWVHEFVNKNCIILNDKLGAALTDMYAK 277 (519)
Q Consensus 212 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 277 (519)
++|..+|++..... +-+...|..++..+. +.|++ ++|..++++..+.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666665542 234445555555443 23554 6666666666663223445566666666666
Q ss_pred cCCHHHHHHHHhhcCC--C-Chh-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCcHHHHHH
Q 048578 278 CGYIEEALRVFKIVLE--K-NVC-TWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTAC-SHAGLIEKGKE 352 (519)
Q Consensus 278 ~g~~~~a~~~~~~~~~--~-~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~-~~~g~~~~a~~ 352 (519)
.|++++|..+|+++.+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 6777777777766643 2 233 66667777777777777777777776543 23333443333222 12577777777
Q ss_pred HHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCC--CHHHHHHHHHHHccccCCCCHHHHHHHHH
Q 048578 353 IFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-P---MEP--NAVLWGSLLTACASADDGANVELAEIAME 426 (519)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~---~~p--~~~~~~~ll~~~~~~~~~~~~~~a~~~~~ 426 (519)
+|++..+. .+.+...|..++..+.+.|++++|..+|++. . +.| ....|..++..... .|+.+.|..+++
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~---~g~~~~a~~~~~ 265 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN---IGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH---HSCHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH---cCCHHHHHHHHH
Confidence 77777663 2335666777777777777777777777776 2 244 34566666766666 777777777777
Q ss_pred HHHhhCCCCC
Q 048578 427 RLIKLEPFND 436 (519)
Q Consensus 427 ~~~~~~p~~~ 436 (519)
++.+..|++.
T Consensus 266 ~a~~~~p~~~ 275 (308)
T 2ond_A 266 RRFTAFREEY 275 (308)
T ss_dssp HHHHHTTTTT
T ss_pred HHHHHccccc
Confidence 7777777644
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.44 E-value=3.6e-12 Score=119.13 Aligned_cols=273 Identities=12% Similarity=0.013 Sum_probs=144.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCC
Q 048578 100 NTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGD 179 (519)
Q Consensus 100 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 179 (519)
......+...|++++|+..|+++.+.. |+... .....+..+...|...|+
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~----------------------------~~~~~~~~l~~~~~~~g~ 58 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLK----------------------------TLSAIYSQLGNAYFYLHD 58 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHH----------------------------HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhC--cccHH----------------------------HHHHHHHHHHHHHHHcCC
Confidence 334556667777888888777777631 21100 002344555566666777
Q ss_pred hHHHHHHHhcCCC---------CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCC
Q 048578 180 VKSAQLLFDQMTE---------KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGV-EVN----ELTLVSVLSACANLGA 245 (519)
Q Consensus 180 ~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~ 245 (519)
+++|...+++... ....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 59 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 59 YAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 7777776665432 1133556666667777777777777666543210 011 2244445555555555
Q ss_pred --------------------hHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC--ChhhHHHHH
Q 048578 246 --------------------SELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK--NVCTWNSII 303 (519)
Q Consensus 246 --------------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~ 303 (519)
++.|...++..... ......+ ...++..+.
T Consensus 139 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~----------------------------~~~~~~~~~~~~~~~~l~ 190 (338)
T 3ro2_A 139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL----------------------------VTALGDRAAQGRAFGNLG 190 (338)
T ss_dssp TSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH----------------------------HHHHTCHHHHHHHHHHHH
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH----------------------------HHhcCCHHHHHHHHHHHH
Confidence 45554444443321 0000000 122344455
Q ss_pred HHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC----hhHHHHHH
Q 048578 304 GGLAIHGCGEEAVKMFWQMQMS----GIKP-DDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN----VKHYGCLV 374 (519)
Q Consensus 304 ~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~ 374 (519)
..+...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++..+...-.++ ..++..+.
T Consensus 191 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 270 (338)
T 3ro2_A 191 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG 270 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 5555556666666655554321 1000 1125566666666667777777666665542111111 34566667
Q ss_pred HHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCC
Q 048578 375 DLLCRARLLDEAYEVIRNM-------PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEP 433 (519)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~-------~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p 433 (519)
..|...|++++|...+++. +..+ ...++..+...+.. .|++++|...++++.+..+
T Consensus 271 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 271 NTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA---LGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHC--
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH---cCChHHHHHHHHHHHHHHH
Confidence 7777777777777776665 1111 12355566666777 7777777777777776654
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.43 E-value=2.8e-13 Score=125.41 Aligned_cols=242 Identities=12% Similarity=0.028 Sum_probs=128.3
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc------C-
Q 048578 195 VVTWTAMINGHVKQKNYREGIDLFRKMRDS-------GVEVNELTLVSVLSACANLGASELGKWVHEFVNKN------C- 260 (519)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~- 260 (519)
..++..+...+...|++++|..+|+++.+. ........+..+...+...|+++.|...++.+.+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456778888888888888888888887762 12223455666677777777777777777776653 1
Q ss_pred CCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 048578 261 IILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPD-DVTLIAVLT 339 (519)
Q Consensus 261 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~ 339 (519)
.+....++..+...|...|++++|...++++.+. .++... +-.|+ ...+..+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------------------------~~~~~~-~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI------------------------REKVLG-KDHPDVAKQLNNLAL 161 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------------------------HHHHHC-TTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH------------------------HHHhcC-CCChHHHHHHHHHHH
Confidence 1223344555555555555555555555443210 000000 11121 224555555
Q ss_pred HHhccCcHHHHHHHHHHcHHhc-----C-CCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C---------CCCCH----
Q 048578 340 ACSHAGLIEKGKEIFYNMRRDY-----K-VEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-P---------MEPNA---- 399 (519)
Q Consensus 340 ~~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~---------~~p~~---- 399 (519)
.+...|++++|..+++++.+.. + .+....++..+..+|...|++++|.+.++++ . ..+..
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 241 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW 241 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence 5555566666655555554410 0 1112334555556666666666666655554 1 11111
Q ss_pred ---HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 400 ---VLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 400 ---~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
..+..+...+.. .+.+.++...++......|.++.++..++.+|.+.|++++|.+++++..+
T Consensus 242 ~~~~~~~~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 242 MHAEEREECKGKQKD---GTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHC----------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhh---HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111112222333 55566666777777777777778888888888888999998888887764
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.42 E-value=4.8e-12 Score=107.37 Aligned_cols=166 Identities=14% Similarity=0.044 Sum_probs=118.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048578 264 NDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTA 340 (519)
Q Consensus 264 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 340 (519)
++.+|..+...|...|++++|++.|++..+ .+..++..+...+.+.|++++|...+++..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 345566666666666666666666666533 255667777777777777777777777776543 3345566677777
Q ss_pred HhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCH
Q 048578 341 CSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANV 418 (519)
Q Consensus 341 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~ 418 (519)
+...++++.|...+.+..+ ..+.+...+..+..+|.+.|++++|++.|++. .+.| +..++..+...+.. .|++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~---~g~~ 157 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG---KGLR 157 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCH
T ss_pred HHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH---CCCH
Confidence 7778888888888887776 23445667777888888888888888888777 4455 45677777777888 8888
Q ss_pred HHHHHHHHHHHhhCCCC
Q 048578 419 ELAEIAMERLIKLEPFN 435 (519)
Q Consensus 419 ~~a~~~~~~~~~~~p~~ 435 (519)
++|.+.++++++.+|.+
T Consensus 158 ~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 158 DEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHhCCccC
Confidence 88888888888887764
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.42 E-value=2.3e-11 Score=116.30 Aligned_cols=229 Identities=11% Similarity=0.035 Sum_probs=156.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC------CcchhHHH
Q 048578 201 MINGHVKQKNYREGIDLFRKMRDS----GVEV-NELTLVSVLSACANLGASELGKWVHEFVNKNCI------ILNDKLGA 269 (519)
Q Consensus 201 li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 269 (519)
....+...|++++|...|++..+. +-.+ ...++..+...+...|+++.|...+.+..+... +....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444556666666666666666543 1011 123555566666666777777666666654311 11234566
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHH
Q 048578 270 ALTDMYAKCGYIEEALRVFKIVLE-----KN----VCTWNSIIGGLAIHGCGEEAVKMFWQMQMS----GIKPD-DVTLI 335 (519)
Q Consensus 270 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~ 335 (519)
.+..+|...|++++|...|++..+ ++ ..++..+...|...|++++|...+++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 777777778888888777776642 11 236777888888999999999998887651 32243 45788
Q ss_pred HHHHHHhccCcHHHHHHHHHHcHHhc---CCCCChhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 048578 336 AVLTACSHAGLIEKGKEIFYNMRRDY---KVEPNVKHYGCLVDLLCRARL---LDEAYEVIRNMPMEPNA-VLWGSLLTA 408 (519)
Q Consensus 336 ~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~p~~-~~~~~ll~~ 408 (519)
.+..++...|++++|...+++..+.. +.+.....+..+...|...|+ +++|+.++++.+..|+. ..+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 89999999999999999998876621 122223345678888888898 88999999998555543 366677777
Q ss_pred HccccCCCCHHHHHHHHHHHHhhC
Q 048578 409 CASADDGANVELAEIAMERLIKLE 432 (519)
Q Consensus 409 ~~~~~~~~~~~~a~~~~~~~~~~~ 432 (519)
|.. .|++++|...++++.+..
T Consensus 349 y~~---~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHE---RKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHH---TTCHHHHHHHHHHHHHHH
T ss_pred HHH---CCCHHHHHHHHHHHHHHH
Confidence 888 999999999999988764
No 70
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.39 E-value=7.4e-12 Score=128.05 Aligned_cols=162 Identities=14% Similarity=0.162 Sum_probs=138.4
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHH
Q 048578 296 VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPD-DVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLV 374 (519)
Q Consensus 296 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 374 (519)
..+++.+...+.+.|++++|++.|++..+. .|+ ..++..+..+|.+.|++++|+..|++..+. -+-+...|..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 456777888888888888888888888774 444 568888888999999999999999988872 234577888999
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCc
Q 048578 375 DLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQW 452 (519)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 452 (519)
.+|...|++++|++.|++. .+.| +...|..+...+.. .|++++|+..|+++++++|+++.++..++.+|...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~---~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD---SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 9999999999999999887 6666 46688888889999 99999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHh
Q 048578 453 DDAGKMRRLMKE 464 (519)
Q Consensus 453 ~~A~~~~~~m~~ 464 (519)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999888764
No 71
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.38 E-value=4e-10 Score=107.25 Aligned_cols=261 Identities=11% Similarity=-0.032 Sum_probs=161.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHhccCChHHHHHHHHHHHHcCC---Cc--chhHHHHHH
Q 048578 202 INGHVKQKNYREGIDLFRKMRDSGVEVNEL----TLVSVLSACANLGASELGKWVHEFVNKNCI---IL--NDKLGAALT 272 (519)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~ 272 (519)
...+...|++++|...+++........+.. .+..+...+...|+++.|...+++...... .+ ....+..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344555666666666666655543211221 334444555566666666666666544210 01 122345566
Q ss_pred HHHHhcCCHHHHHHHHhhcCC-------C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHHHHHHH
Q 048578 273 DMYAKCGYIEEALRVFKIVLE-------K----NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIK--P--DDVTLIAV 337 (519)
Q Consensus 273 ~~~~~~g~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~--p--~~~~~~~l 337 (519)
..+...|++++|.+.+++..+ + ....+..+...+...|++++|...+++....... + ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 667777777777777765532 1 1234555667777888888888888877643211 1 23467777
Q ss_pred HHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHH-----HHHHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHH
Q 048578 338 LTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYG-----CLVDLLCRARLLDEAYEVIRNM-PMEPN-----AVLWGSLL 406 (519)
Q Consensus 338 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~A~~~~~~~-~~~p~-----~~~~~~ll 406 (519)
...+...|++++|...+++......-......+. ..+..+...|++++|...+++. ...|. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 8888888999999888888765211111111121 2334477889999999988887 22221 23456666
Q ss_pred HHHccccCCCCHHHHHHHHHHHHhhCCC------CCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048578 407 TACASADDGANVELAEIAMERLIKLEPF------NDGNYVLMSNIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
..+.. .|++++|...++++....+. ...++..++.++...|++++|...+++....
T Consensus 261 ~~~~~---~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 261 RAQIL---LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHH---cCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 77888 88999999999888765422 1236677888889999999999988887653
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.38 E-value=2e-11 Score=103.27 Aligned_cols=162 Identities=16% Similarity=0.055 Sum_probs=109.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHH
Q 048578 299 WNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLC 378 (519)
Q Consensus 299 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (519)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..++..+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 4444555555666666666666554432 234456666666666667777777766666652 2344566666777777
Q ss_pred hcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHH
Q 048578 379 RARLLDEAYEVIRNM-PME-PNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAG 456 (519)
Q Consensus 379 ~~~~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 456 (519)
..|++++|.+.++++ ... .+...+..+...+.. .|++++|...++++.+..|.++.++..++.++...|++++|.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN---LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH---cCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 777777777777666 222 345566667777777 788888888888888888888888888888888888888888
Q ss_pred HHHHHHHhCC
Q 048578 457 KMRRLMKERN 466 (519)
Q Consensus 457 ~~~~~m~~~~ 466 (519)
+.+++..+..
T Consensus 165 ~~~~~~~~~~ 174 (186)
T 3as5_A 165 PHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHcC
Confidence 8888876543
No 73
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.38 E-value=1.1e-10 Score=107.84 Aligned_cols=214 Identities=10% Similarity=0.011 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHHcCCCcchhHHHHHHHHHH-------hcCCH-------HHHHHHHhhcCC---C-ChhhHHHHHHHHHH
Q 048578 247 ELGKWVHEFVNKNCIILNDKLGAALTDMYA-------KCGYI-------EEALRVFKIVLE---K-NVCTWNSIIGGLAI 308 (519)
Q Consensus 247 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~a~~~~~~~~~---~-~~~~~~~l~~~~~~ 308 (519)
+.|...|+++.... +.++..|..++..+. +.|++ ++|..+|++..+ | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57778888888764 667778887777775 35775 899999998865 2 45689999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH-H-HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHH-hcCChHH
Q 048578 309 HGCGEEAVKMFWQMQMSGIKPDD-V-TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLC-RARLLDE 385 (519)
Q Consensus 309 ~g~~~~a~~~~~~m~~~g~~p~~-~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 385 (519)
.|++++|..+|+++.+. .|+. . .|..++..+.+.|++++|..+|++..+. .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999974 5543 3 7899999999999999999999999872 3345555554444322 3699999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhh---CCC-CCchHHHHHHHHHhcCCchHHHHHH
Q 048578 386 AYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKL---EPF-NDGNYVLMSNIYAAKAQWDDAGKMR 459 (519)
Q Consensus 386 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (519)
|..+|++. ...| +...|..++..+.. .|++++|..+|+++++. .|. +...|..++..+.+.|++++|..++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~---~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSH---LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHH---CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999988 3344 56788888888888 99999999999999996 443 5678999999999999999999999
Q ss_pred HHHHhCCCc
Q 048578 460 RLMKERNIV 468 (519)
Q Consensus 460 ~~m~~~~~~ 468 (519)
+++.+....
T Consensus 265 ~~a~~~~p~ 273 (308)
T 2ond_A 265 KRRFTAFRE 273 (308)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHccc
Confidence 999876553
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.37 E-value=4.7e-11 Score=113.93 Aligned_cols=300 Identities=11% Similarity=0.062 Sum_probs=201.6
Q ss_pred CCchhHHHHHHHHH--HhcCChHHHHHHHhcCCC--------CchhHHHHHHHH--HHHcCChhHHH---------HHHH
Q 048578 161 NSVIHSLTRLITFY--CNFGDVKSAQLLFDQMTE--------KNVVTWTAMING--HVKQKNYREGI---------DLFR 219 (519)
Q Consensus 161 ~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~--~~~~~~~~~a~---------~~~~ 219 (519)
.|+..+-+.+-.-| ...+++++|..+++++.+ .+...|-.++.. ....+....+. ..++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 44445555555555 788999999888877532 233344444432 11112222222 5555
Q ss_pred HHHhCCCCCCH-H---HHHHHHHHHhccCChHHHHHHHHHHHHcCC-----CcchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 048578 220 KMRDSGVEVNE-L---TLVSVLSACANLGASELGKWVHEFVNKNCI-----ILNDKLGAALTDMYAKCGYIEEALRVFKI 290 (519)
Q Consensus 220 ~m~~~~~~~~~-~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 290 (519)
.+.....+.+. . .+......+...|+++.|...+++..+... +....++..+..+|...|+++.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 55432111111 1 122334456788999999999999876421 12355778889999999999999988877
Q ss_pred cCC-----CC-----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHH
Q 048578 291 VLE-----KN-----VCTWNSIIGGLAIHGCGEEAVKMFWQMQMS----GIKP-DDVTLIAVLTACSHAGLIEKGKEIFY 355 (519)
Q Consensus 291 ~~~-----~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 355 (519)
..+ ++ ..+++.+...+...|++++|.+.+++..+. +-.+ ...++..+..+|...|++++|...++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 632 12 346778889999999999999999887642 2111 12478888999999999999999999
Q ss_pred HcHHhc---CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CC--CCC-HHHHHHHHHHHccccCCCC---HHHHH
Q 048578 356 NMRRDY---KVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM----PM--EPN-AVLWGSLLTACASADDGAN---VELAE 422 (519)
Q Consensus 356 ~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~--~p~-~~~~~~ll~~~~~~~~~~~---~~~a~ 422 (519)
+..+.. +.+....++..+...|.+.|++++|...+++. .. .|. ...+..+...+.. .++ +++|.
T Consensus 247 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~---~~~~~~~~~al 323 (378)
T 3q15_A 247 KAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKE---TVDERKIHDLL 323 (378)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSS---SCCHHHHHHHH
T ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC---CCcHHHHHHHH
Confidence 887611 22334677888999999999999999999887 11 232 3345555555666 777 77777
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 423 IAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 423 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
..+++. ...|.....+..++..|...|++++|...+++..+
T Consensus 324 ~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 324 SYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777762 12233456778999999999999999999998864
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.36 E-value=2.4e-12 Score=119.04 Aligned_cols=238 Identities=13% Similarity=0.029 Sum_probs=147.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCC--------C---chhHHHHHHHHHHHcCChhHHHHHHHHHHhC------C
Q 048578 163 VIHSLTRLITFYCNFGDVKSAQLLFDQMTE--------K---NVVTWTAMINGHVKQKNYREGIDLFRKMRDS------G 225 (519)
Q Consensus 163 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~ 225 (519)
...++..+...+...|++++|..+|+++.+ . ...++..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 467788999999999999999999988764 1 2356888999999999999999999998764 2
Q ss_pred C-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc------CC-CcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh
Q 048578 226 V-EVNELTLVSVLSACANLGASELGKWVHEFVNKN------CI-ILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVC 297 (519)
Q Consensus 226 ~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 297 (519)
- .....++..+...+...|++++|...++.+.+. +. +.....+..+...+...|++++|.+++
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~--------- 176 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYY--------- 176 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHH---------
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH---------
Confidence 1 223567888888999999999999999988764 11 222334444555555555555555544
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHcHHhc------CCC
Q 048578 298 TWNSIIGGLAIHGCGEEAVKMFWQMQMS------GIKPD-DVTLIAVLTACSHAGLIEKGKEIFYNMRRDY------KVE 364 (519)
Q Consensus 298 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~------g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~ 364 (519)
+++.+. +..|+ ..++..+..++...|++++|...++++.+.. ...
T Consensus 177 ----------------------~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 177 ----------------------QRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp ----------------------HHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ----------------------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 443321 11222 2255556666666666666666666655410 011
Q ss_pred CC-------hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 365 PN-------VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 365 ~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
+. ...+..+...+...+.+.+|...++.. ...| +..++..+...|.. .|++++|.+.+++++++.|.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRR---QGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHhhc
Confidence 11 112222333344455555666666665 3334 34567778888888 88999999999998887664
No 76
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.35 E-value=8.7e-09 Score=104.19 Aligned_cols=413 Identities=9% Similarity=-0.008 Sum_probs=270.0
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCC---hhHHHHHHH
Q 048578 47 KQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN---PSTFAFNTVIRGYAEAGL---GHRGIQLYT 120 (519)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~---~~~a~~~~~ 120 (519)
...++..+... +.|...|..++..+.+. +.++.+..+|+.+.. .+...|...+..-.+.|+ ++.+..+|+
T Consensus 52 i~~lE~~l~~n-p~d~~~W~~yi~~~~~~---~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 52 IGKLNDMIEEQ-PTDIFLYVKLLKHHVSL---KQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHC-cCCHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 44455555554 56888999999999888 899999999998843 456678888888888888 999999999
Q ss_pred HHHhCC-CCCCcchHHHHHHHHcCccc-----------hHHHHHHHHHhCCC-CC-chhHHHHHHHHHH---------hc
Q 048578 121 QMIGNG-LDPDSFTYPILLKACGDLRQ-----------VKGVHSLVVKSKDF-NS-VIHSLTRLITFYC---------NF 177 (519)
Q Consensus 121 ~m~~~g-~~p~~~~~~~ll~~~~~~~~-----------~~~~~~~~~~~~~~-~~-~~~~~~~l~~~~~---------~~ 177 (519)
+..... ..|+...|..-+.-..+.++ +.++++.....-+. .+ +...|...+.... ..
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 999854 24777777766654332221 33555554443335 44 4567777776543 23
Q ss_pred CChHHHHHHHhcCCC-Cc---hhHHHH---HHHHH----------HHcCChhHHHHHHHHHHhC--CCC-----------
Q 048578 178 GDVKSAQLLFDQMTE-KN---VVTWTA---MINGH----------VKQKNYREGIDLFRKMRDS--GVE----------- 227 (519)
Q Consensus 178 g~~~~A~~~~~~~~~-~~---~~~~~~---li~~~----------~~~~~~~~a~~~~~~m~~~--~~~----------- 227 (519)
++++.+..+|++... |. ..+|.. ..... -...+++.|...+.++... ++.
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~ 287 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT 287 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch
Confidence 457788899988875 31 123322 21111 0011233444445443211 110
Q ss_pred ----C-----C---HHHHHHHHHHHhccC-------ChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHH-HH
Q 048578 228 ----V-----N---ELTLVSVLSACANLG-------ASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEAL-RV 287 (519)
Q Consensus 228 ----~-----~---~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~ 287 (519)
| + ...|...+..--..+ ..+.+..+|++.+... +....+|-..+..+...|+.++|. .+
T Consensus 288 ~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~i 366 (679)
T 4e6h_A 288 ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKY 366 (679)
T ss_dssp TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1 1 123444443322222 1233456777777763 567778888888888888888886 88
Q ss_pred HhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC---------CCCC------------HHHHHHHHHHHhc
Q 048578 288 FKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSG---------IKPD------------DVTLIAVLTACSH 343 (519)
Q Consensus 288 ~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g---------~~p~------------~~~~~~l~~~~~~ 343 (519)
|++... .+...|...+....+.|+++.|..+|+++.... -.|+ ...|...+....+
T Consensus 367 l~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR 446 (679)
T 4e6h_A 367 LKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR 446 (679)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH
Confidence 888754 345567777888888999999999999887531 0142 2357777777778
Q ss_pred cCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhc-CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHH
Q 048578 344 AGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRA-RLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVEL 420 (519)
Q Consensus 344 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~ 420 (519)
.|+.+.|..+|....+. ...+....|...+..-.+. ++.+.|..+|+.. ..-| +...|...+..... .|+.+.
T Consensus 447 ~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~---~~~~~~ 522 (679)
T 4e6h_A 447 IQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIY---VNEESQ 522 (679)
T ss_dssp HHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HTCHHH
T ss_pred cCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh---CCCHHH
Confidence 88999999999998873 0112334444444444444 4589999999887 2223 45566677777777 788999
Q ss_pred HHHHHHHHHhhCCC---CCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 048578 421 AEIAMERLIKLEPF---NDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 421 a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (519)
|..+|+++++..|+ ....|...+..-.+.|+.+.+.++.+++.+....
T Consensus 523 AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 523 VKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999988773 4567888888888999999999999999876654
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.32 E-value=8.2e-11 Score=103.53 Aligned_cols=205 Identities=13% Similarity=0.017 Sum_probs=152.5
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHH
Q 048578 228 VNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK---NVCTWNSIIG 304 (519)
Q Consensus 228 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~ 304 (519)
.|+..+......+...|++++|...|+...+...+++...+..+..++...|++++|+..|++..+. +..+|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 3567788888889999999999999999998874367777777889999999999999999888543 4567888888
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC---hhHHHHHH
Q 048578 305 GLAIHGCGEEAVKMFWQMQMSGIKPDD-------VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN---VKHYGCLV 374 (519)
Q Consensus 305 ~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~ 374 (519)
.+...|++++|+..+++..+.. +.+. ..|..+...+...|++++|+..|++..+ ..|+ ...|..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 9999999999999999988742 2233 4577778888889999999999998876 2343 56777778
Q ss_pred HHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 048578 375 DLLCRARLLDEAYEVIRNM-PM-EPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIY 446 (519)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (519)
.+|...|+. .++++ .+ ..+...+...... . .+.+++|...++++++++|+++.+...+..+.
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~--~---~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEKAK--A---DAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHHHH--H---HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHHHH--H---HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 887665543 23332 11 2234444444322 2 45789999999999999999887777766554
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.30 E-value=2e-10 Score=96.96 Aligned_cols=168 Identities=10% Similarity=-0.009 Sum_probs=141.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048578 265 DKLGAALTDMYAKCGYIEEALRVFKIVLEK---NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTAC 341 (519)
Q Consensus 265 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 341 (519)
...+..+...+...|++++|...++++.+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 445667788888999999999999988653 56778888999999999999999999988753 44667888899999
Q ss_pred hccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHH
Q 048578 342 SHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVE 419 (519)
Q Consensus 342 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~ 419 (519)
...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++ ...| +...+..+...+.. .|+++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~~~ 161 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ---MGRHE 161 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH---cCCHH
Confidence 9999999999999999883 4456788889999999999999999999988 3334 56788888888999 99999
Q ss_pred HHHHHHHHHHhhCCCCCch
Q 048578 420 LAEIAMERLIKLEPFNDGN 438 (519)
Q Consensus 420 ~a~~~~~~~~~~~p~~~~~ 438 (519)
+|...++++.+..|.++..
T Consensus 162 ~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 162 EALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHHHHcCCCchhh
Confidence 9999999999988876543
No 79
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.30 E-value=7.3e-11 Score=115.95 Aligned_cols=206 Identities=12% Similarity=-0.055 Sum_probs=110.3
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHh
Q 048578 211 YREGIDLFRKMRDSGVEVNELTLVSVLSACANLGAS-ELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFK 289 (519)
Q Consensus 211 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 289 (519)
++++++.+++..... +.+...+..+..++...|++ ++|...+++..+.. +.+...+..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444433321 22444555555555555555 55555555555543 3344555555555555666666666555
Q ss_pred hcCC--CChhhHHHHHHHHHHc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--------CcHHHH
Q 048578 290 IVLE--KNVCTWNSIIGGLAIH---------GCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHA--------GLIEKG 350 (519)
Q Consensus 290 ~~~~--~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~--------g~~~~a 350 (519)
+..+ |+...+..+...+... |++++|+..+++..+.. +-+...+..+..+|... |++++|
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 5532 3344455555555555 66666666666665532 22344566666666655 666666
Q ss_pred HHHHHHcHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHH
Q 048578 351 KEIFYNMRRDYKVE---PNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIA 424 (519)
Q Consensus 351 ~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~ 424 (519)
...|++..+. .+ .+...|..+..+|...|++++|.+.|++. .+.| +...+..+...+.. .|++++|.+.
T Consensus 241 ~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~---lg~~~eAi~~ 314 (474)
T 4abn_A 241 LSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEF---LSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 6666666552 12 24556666666666666666666666665 3334 23345555555555 5555555543
No 80
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.30 E-value=2.5e-08 Score=100.81 Aligned_cols=396 Identities=9% Similarity=-0.002 Sum_probs=267.0
Q ss_pred CcccHHHHHHhc---cCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCC---hHHHHHHHhcCCC-----CCcc
Q 048578 29 KSHHHLPLLQKC---THLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQ---IAYAHLVFNQIIN-----PSTF 97 (519)
Q Consensus 29 ~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---~~~A~~~~~~~~~-----~~~~ 97 (519)
|..++..++..+ .....++.+++.+... +|.....|...+..-.+. ++ ++.+..+|++... |++.
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~---~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDK---MEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC-----CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhh---CCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 666777777766 3455567888888866 577778888888887777 77 9999999999843 7777
Q ss_pred hHHHHHHHHHhcCCh--------hHHHHHHHHHHh-CCC-CCCc-chHHHHHHHHcC---------ccchHHHHHHHHHh
Q 048578 98 AFNTVIRGYAEAGLG--------HRGIQLYTQMIG-NGL-DPDS-FTYPILLKACGD---------LRQVKGVHSLVVKS 157 (519)
Q Consensus 98 ~~~~ll~~~~~~g~~--------~~a~~~~~~m~~-~g~-~p~~-~~~~~ll~~~~~---------~~~~~~~~~~~~~~ 157 (519)
.|...+.-..+.++. +.+.++|+.... .|. .|+. ..|...+.-... .++.+.+...+.+.
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 888887766665554 344578877665 466 5644 567666654332 11234444444444
Q ss_pred CCCCCc--hhHHHHHHHHHHh-------------cCChHHHHHHHhcC-------CC--Cc-------------------
Q 048578 158 KDFNSV--IHSLTRLITFYCN-------------FGDVKSAQLLFDQM-------TE--KN------------------- 194 (519)
Q Consensus 158 ~~~~~~--~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~-------~~--~~------------------- 194 (519)
-.+|.. ..+|......--. ..+++.|...+..+ .. |.
T Consensus 221 L~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ 300 (679)
T 4e6h_A 221 LCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQ 300 (679)
T ss_dssp TTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHH
T ss_pred HhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHH
Confidence 323221 2333222111111 12233344444331 11 00
Q ss_pred -hhHHHHHHHHHHHcC-------ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHH-HHHHHHHHcCCCcch
Q 048578 195 -VVTWTAMINGHVKQK-------NYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGK-WVHEFVNKNCIILND 265 (519)
Q Consensus 195 -~~~~~~li~~~~~~~-------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~ 265 (519)
...|...+..--..+ ..+.+..+|++.... ++-....|...+..+...|+.+.|. .+++..... +|.+.
T Consensus 301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~ 378 (679)
T 4e6h_A 301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSA 378 (679)
T ss_dssp HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCH
T ss_pred HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCH
Confidence 134555554333322 124456778888775 3447778888888888889999996 999999875 35667
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC-------------CC------------hhhHHHHHHHHHHcCChHHHHHHHH
Q 048578 266 KLGAALTDMYAKCGYIEEALRVFKIVLE-------------KN------------VCTWNSIIGGLAIHGCGEEAVKMFW 320 (519)
Q Consensus 266 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------------~~------------~~~~~~l~~~~~~~g~~~~a~~~~~ 320 (519)
..+-..+...-+.|++++|.++|+++.+ |+ ...|...+....+.|+.+.|..+|.
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7778888999999999999999998854 21 2357888888888999999999999
Q ss_pred HHHHC-CCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 048578 321 QMQMS-GIKPDDVTLIAVLTACSH-AGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP 397 (519)
Q Consensus 321 ~m~~~-g~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p 397 (519)
+..+. + .+....|...+..-.+ .++.+.|..+|+...+. .+.+...|...++.....|+.+.|..+|+.. ...|
T Consensus 459 ~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 459 KCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 99876 2 2223344333333233 35589999999999985 4456667888899889999999999999997 3334
Q ss_pred ----CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCC
Q 048578 398 ----NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFND 436 (519)
Q Consensus 398 ----~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (519)
....|...+..-.. .|+.+.+..+.+++.+..|+++
T Consensus 536 ~~~~~~~lw~~~~~fE~~---~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 536 DSHLLKMIFQKVIFFESK---VGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp STTHHHHHHHHHHHHHHH---TCCSHHHHHHHHHHHHHSTTCC
T ss_pred CHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCc
Confidence 23578888888777 9999999999999999999864
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.28 E-value=8.8e-11 Score=103.31 Aligned_cols=190 Identities=12% Similarity=-0.075 Sum_probs=124.6
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 048578 263 LNDKLGAALTDMYAKCGYIEEALRVFKIVLE----KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPD-DVTLIAV 337 (519)
Q Consensus 263 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l 337 (519)
.++..+......+...|++++|+..|++..+ ++...+..+..++...|++++|+..+++..+. .|+ ...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 3456677777777778888888887776633 45556666777777778888888888777764 344 3467777
Q ss_pred HHHHhccCcHHHHHHHHHHcHHhcCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC--H-HHHHHHH
Q 048578 338 LTACSHAGLIEKGKEIFYNMRRDYKVEPNV-------KHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN--A-VLWGSLL 406 (519)
Q Consensus 338 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~--~-~~~~~ll 406 (519)
..++...|++++|...|++..+. .+.+. ..|..+...+...|++++|++.|++. .+.|+ . ..+..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 77777778888888887777763 22233 44666777777777777777777776 56665 2 3444444
Q ss_pred HHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 407 TACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
..+.. .+...++++....+.++..|... .....+.+++|...+++..+..
T Consensus 161 ~~~~~--------~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 161 VLFYN--------NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHH--------HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH--------HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Confidence 44433 33455666666665554443322 3344566799999999987744
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.27 E-value=1.3e-09 Score=103.94 Aligned_cols=227 Identities=13% Similarity=0.039 Sum_probs=150.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCC-----C-cchhHHH
Q 048578 201 MINGHVKQKNYREGIDLFRKMRDSGV-EVN----ELTLVSVLSACANLGASELGKWVHEFVNKNCI-----I-LNDKLGA 269 (519)
Q Consensus 201 li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~ 269 (519)
....+...|++++|...|++..+... .++ ..++..+...+...|+++.|...+++..+... . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 33445566677777777666654310 111 23455566666667777777666666554210 1 1244566
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHH
Q 048578 270 ALTDMYAKCGYIEEALRVFKIVLE-----KN----VCTWNSIIGGLAIHGCGEEAVKMFWQMQM-----SGIKPDDVTLI 335 (519)
Q Consensus 270 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~ 335 (519)
.+..+|...|++++|.+.|++..+ ++ ..++..+...+...|++++|...+++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 677777777777777777766533 11 24567777888888888888888888765 32 22356788
Q ss_pred HHHHHHhccCcHHHHHHHHHHcHHhcCC---CCChhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 048578 336 AVLTACSHAGLIEKGKEIFYNMRRDYKV---EPNVKHYGCLVDLLCRARL---LDEAYEVIRNMPMEPNA-VLWGSLLTA 408 (519)
Q Consensus 336 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~p~~-~~~~~ll~~ 408 (519)
.+..++.+.|++++|...+++..+...- +.....+..+...+...++ +.+|+..+++.+..|+. ..+..+...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 8888899999999999999888773222 2223455666677777788 88888888887544433 355667777
Q ss_pred HccccCCCCHHHHHHHHHHHHhh
Q 048578 409 CASADDGANVELAEIAMERLIKL 431 (519)
Q Consensus 409 ~~~~~~~~~~~~a~~~~~~~~~~ 431 (519)
|.. .|++++|...++++.+.
T Consensus 346 y~~---~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 346 FES---SCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHH---TTCHHHHHHHHHHHHHH
T ss_pred HHH---CCCHHHHHHHHHHHHHH
Confidence 888 89999999999988764
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.23 E-value=1.6e-09 Score=103.13 Aligned_cols=263 Identities=9% Similarity=-0.056 Sum_probs=182.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC----Cch----hHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCCH----HHH
Q 048578 167 LTRLITFYCNFGDVKSAQLLFDQMTE----KNV----VTWTAMINGHVKQKNYREGIDLFRKMRDSGV-EVNE----LTL 233 (519)
Q Consensus 167 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~----~~~ 233 (519)
.......+...|++++|...+++... .+. .+++.+...+...|++++|...+++...... ..+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 33445567788999999998876532 222 2466677788889999999999988765311 1122 235
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHc----CCC--c-chhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C------Chhh
Q 048578 234 VSVLSACANLGASELGKWVHEFVNKN----CII--L-NDKLGAALTDMYAKCGYIEEALRVFKIVLE--K------NVCT 298 (519)
Q Consensus 234 ~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~------~~~~ 298 (519)
..+...+...|+++.|...++...+. +.+ | ....+..+...+...|++++|...+++... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 56677788899999999998887653 221 2 345666788889999999999999987632 1 1245
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHhccCcHHHHHHHHHHcHHhcCCCC---ChhH
Q 048578 299 WNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPD--DVTLI----AVLTACSHAGLIEKGKEIFYNMRRDYKVEP---NVKH 369 (519)
Q Consensus 299 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~ 369 (519)
+..+...+...|++++|...+++.....-.++ ..... ..+..+...|++++|...++..... ...+ ....
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~ 255 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHH
Confidence 77788888999999999999998865311111 11111 2334477899999999999988762 2111 1235
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-------CCCCCHH-HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCC
Q 048578 370 YGCLVDLLCRARLLDEAYEVIRNM-------PMEPNAV-LWGSLLTACASADDGANVELAEIAMERLIKLEP 433 (519)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~-------~~~p~~~-~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p 433 (519)
+..+...+...|++++|...+++. +..++.. .+..+..++.. .|+.++|...++++....+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ---AGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHhc
Confidence 667888999999999999998876 2111222 45555666777 8999999999999887653
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.22 E-value=6.7e-11 Score=107.51 Aligned_cols=167 Identities=14% Similarity=0.104 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHcHHhc-----C-CC
Q 048578 298 TWNSIIGGLAIHGCGEEAVKMFWQMQMS------GIKPD-DVTLIAVLTACSHAGLIEKGKEIFYNMRRDY-----K-VE 364 (519)
Q Consensus 298 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~------g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~-~~ 364 (519)
++..+...+...|++++|...+++..+. .-.|+ ..++..+...+...|++++|...+++..+.. + .+
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444555555555555555555554432 11122 3356666667777777777777776665520 1 11
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhC-C---------CCCCH-HHHHHHHHHHcccc---CCCCHHHHHHHHHHHHh
Q 048578 365 PNVKHYGCLVDLLCRARLLDEAYEVIRNM-P---------MEPNA-VLWGSLLTACASAD---DGANVELAEIAMERLIK 430 (519)
Q Consensus 365 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~---------~~p~~-~~~~~ll~~~~~~~---~~~~~~~a~~~~~~~~~ 430 (519)
....++..+..+|...|++++|.+.+++. . ..+.. ..+..+.......+ ....+..+...++....
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 23455666777777777777777776655 1 12211 12222222222200 12223333333333333
Q ss_pred hCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 431 LEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 431 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
..|....++..++.+|...|++++|..++++..+
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344566788889999999999999998888765
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.19 E-value=4.9e-10 Score=102.58 Aligned_cols=226 Identities=13% Similarity=-0.008 Sum_probs=133.5
Q ss_pred ChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHhccCChHHHHHHH
Q 048578 179 DVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDS----GVEVN-ELTLVSVLSACANLGASELGKWVH 253 (519)
Q Consensus 179 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~ 253 (519)
++++|...|++. ...|...|++++|...|++.... |-.++ ..+|..+..+|...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 366666555443 55666777777777777665432 11111 234555555555555555555555
Q ss_pred HHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHc-CChHHHHHHHHHHHHC----CCC
Q 048578 254 EFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIH-GCGEEAVKMFWQMQMS----GIK 328 (519)
Q Consensus 254 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~----g~~ 328 (519)
++..+. +...|+...+ ..+++.+...|... |++++|+..|++..+. +-.
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 544432 1112222211 23466677777775 8888888888877542 101
Q ss_pred CC-HHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCCh-----hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-
Q 048578 329 PD-DVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNV-----KHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAV- 400 (519)
Q Consensus 329 p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~- 400 (519)
+. ..++..+...+...|++++|+..|++..+...-.+.. ..|..+..++...|++++|...|++. .+.|+..
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 11 2467788888888899999999988887731111221 15677788888899999999999887 5555432
Q ss_pred -----HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 048578 401 -----LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLM 442 (519)
Q Consensus 401 -----~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 442 (519)
.+..++.++. .++.+++++|...|+++.+++|.+...+..+
T Consensus 235 ~~~~~~l~~l~~~~~-~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~ 280 (292)
T 1qqe_A 235 SRESNFLKSLIDAVN-EGDSEQLSEHCKEFDNFMRLDKWKITILNKI 280 (292)
T ss_dssp ---HHHHHHHHHHHH-TTCTTTHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH-cCCHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 2344455553 2337788888888888888777654443333
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.17 E-value=5e-09 Score=94.11 Aligned_cols=138 Identities=12% Similarity=0.011 Sum_probs=61.7
Q ss_pred HHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 048578 249 GKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK-----NVCTWNSIIGGLAIHGCGEEAVKMFWQMQ 323 (519)
Q Consensus 249 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 323 (519)
+...+++....+ +++...+..+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444333 223333334555555555555555555554222 22344444555555555555555555554
Q ss_pred HCCCCC-----CHHHHHHHHHHH--hccC--cHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 048578 324 MSGIKP-----DDVTLIAVLTAC--SHAG--LIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRN 392 (519)
Q Consensus 324 ~~g~~p-----~~~~~~~l~~~~--~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 392 (519)
+. .| +..+...++.++ ...| +++.|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 42 33 233444444332 1112 555555555555432 12211222222245555555555555543
No 87
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.17 E-value=2.9e-10 Score=116.35 Aligned_cols=164 Identities=13% Similarity=0.105 Sum_probs=115.0
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 048578 262 ILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPD-DVTLIAV 337 (519)
Q Consensus 262 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l 337 (519)
|-+...++.|..+|.+.|++++|++.|++..+ .+..+|..+..++.+.|++++|+..|++..+. .|+ ...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 33455666677777777777777777766643 24566777777777777777777777777664 343 4577777
Q ss_pred HHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCC
Q 048578 338 LTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDG 415 (519)
Q Consensus 338 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~ 415 (519)
..++...|++++|++.|++..+. -+-+...|..+..+|...|++++|++.|++. .+.| +...+..+...+.. .
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~---~ 158 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQI---V 158 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH---T
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHh---c
Confidence 77777888888888888777762 2334667777788888888888888887776 5556 34567777777777 7
Q ss_pred CCHHHHHHHHHHHHhhC
Q 048578 416 ANVELAEIAMERLIKLE 432 (519)
Q Consensus 416 ~~~~~a~~~~~~~~~~~ 432 (519)
|++++|.+.+++++++.
T Consensus 159 g~~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 159 CDWTDYDERMKKLVSIV 175 (723)
T ss_dssp TCCTTHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC
Confidence 77777777777776543
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.12 E-value=6e-09 Score=93.62 Aligned_cols=184 Identities=11% Similarity=-0.044 Sum_probs=111.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---C---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHHH
Q 048578 264 NDKLGAALTDMYAKCGYIEEALRVFKIVLEK---N---VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGI-KPD-DVTLI 335 (519)
Q Consensus 264 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~-~p~-~~~~~ 335 (519)
+...+..+...+.+.|++++|+..|+++.+. + ..++..+..++.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3445555566666666666666666666442 2 34455566666666666666666666655311 112 23455
Q ss_pred HHHHHHhc--------cCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 048578 336 AVLTACSH--------AGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLT 407 (519)
Q Consensus 336 ~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~ 407 (519)
.+..++.. .|++++|...|+++.+.. +.+......+.......++. ...+..+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 55555555 666666666666665531 11222222111111000000 011345566
Q ss_pred HHccccCCCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHHhc----------CCchHHHHHHHHHHhCCC
Q 048578 408 ACASADDGANVELAEIAMERLIKLEPFND---GNYVLMSNIYAAK----------AQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 408 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~ 467 (519)
.+.. .|++++|...++++++..|+++ .++..++.+|... |++++|...++++.+...
T Consensus 157 ~~~~---~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 157 LYER---RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHH---TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHH---ccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 7888 9999999999999999998854 4788999999877 889999999999987543
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.11 E-value=1.8e-09 Score=85.62 Aligned_cols=127 Identities=17% Similarity=0.176 Sum_probs=83.0
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHcc
Q 048578 334 LIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACAS 411 (519)
Q Consensus 334 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 411 (519)
+..+...+...|++++|..+++++.+. .+.+...+..++..+...|++++|...++++ ...| +...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 444555555666666666666665542 2234455556666666666666666666665 2222 44556666666777
Q ss_pred ccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048578 412 ADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
.|++++|...++++.+..|.++..+..++.++.+.|++++|.+.++++.+.
T Consensus 82 ---~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 ---QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp ---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred ---hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 777888888888877777777777777888888888888888888777654
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.10 E-value=1.2e-09 Score=98.21 Aligned_cols=205 Identities=11% Similarity=-0.023 Sum_probs=143.4
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcc---hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-C---hhh
Q 048578 228 VNELTLVSVLSACANLGASELGKWVHEFVNKNCIILN---DKLGAALTDMYAKCGYIEEALRVFKIVLE--K-N---VCT 298 (519)
Q Consensus 228 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~---~~~ 298 (519)
.+...+-.....+.+.|+++.|...|+.+.+.. +.+ ...+..+..+|.+.|++++|+..|+++.+ | + ..+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 356677778888999999999999999999875 333 67788899999999999999999999855 2 1 345
Q ss_pred HHHHHHHHHH--------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhH
Q 048578 299 WNSIIGGLAI--------HGCGEEAVKMFWQMQMSGIKPDDV-TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKH 369 (519)
Q Consensus 299 ~~~l~~~~~~--------~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 369 (519)
+..+..++.. .|++++|+..|+++.+. .|+.. .... ...+..+... ....
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a--------------~~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDA--------------TQKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHH--------------HHHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHH--------------HHHHHHHHHH-----HHHH
Confidence 7777888888 99999999999999874 34432 2211 1111111110 1123
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHccccC-------CCCHHHHHHHHHHHHhhCCCCCc
Q 048578 370 YGCLVDLLCRARLLDEAYEVIRNM-PMEPN----AVLWGSLLTACASADD-------GANVELAEIAMERLIKLEPFNDG 437 (519)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~~~-------~~~~~~a~~~~~~~~~~~p~~~~ 437 (519)
+..+...|...|++++|+..|+++ ...|+ ...+..+..++...|. .|++++|...++++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 556777888888888888888877 33333 3356666666665111 28899999999999999998754
Q ss_pred ---hHHHHHHHHHhcCCchH
Q 048578 438 ---NYVLMSNIYAAKAQWDD 454 (519)
Q Consensus 438 ---~~~~l~~~~~~~g~~~~ 454 (519)
+...+..++.+.|++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 34445555555554443
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.09 E-value=3.3e-09 Score=96.21 Aligned_cols=202 Identities=11% Similarity=-0.027 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcC-------C
Q 048578 196 VTWTAMINGHVKQKNYREGIDLFRKMRDS------GVEV-NELTLVSVLSACANLGASELGKWVHEFVNKNC-------I 261 (519)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~ 261 (519)
.++..+...|...|++++|...+++..+. +-.| ...++..+...+...|++++|...+.++.+.. .
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34555666666666666666666665432 1111 22344445555555555555555555444320 0
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHH
Q 048578 262 ILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMS------GIKPD-DVTL 334 (519)
Q Consensus 262 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------g~~p~-~~~~ 334 (519)
+.. ..++..+...+...|++++|...++++.+. +-.|+ ..++
T Consensus 124 ~~~-------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 124 PDV-------------------------------AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHH-------------------------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred hHH-------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 111 234555556666666666666666665542 11222 3467
Q ss_pred HHHHHHHhccCcHHHHHHHHHHcHHhc------CCCC-ChhHHHHHHHHHHhcCC------hHHHHHHHHhCC-CCCC-H
Q 048578 335 IAVLTACSHAGLIEKGKEIFYNMRRDY------KVEP-NVKHYGCLVDLLCRARL------LDEAYEVIRNMP-MEPN-A 399 (519)
Q Consensus 335 ~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~------~~~A~~~~~~~~-~~p~-~ 399 (519)
..+..++...|++++|...+++..+.. ...+ ....|..+...+...+. +.++...++..+ ..|+ .
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 777777888888888888887776520 1112 22334334333333222 334444444442 2232 3
Q ss_pred HHHHHHHHHHccccCCCCHHHHHHHHHHHHhh
Q 048578 400 VLWGSLLTACASADDGANVELAEIAMERLIKL 431 (519)
Q Consensus 400 ~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 431 (519)
.++..+...+.. .|++++|...++++++.
T Consensus 253 ~~~~~la~~~~~---~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 253 TTLRSLGALYRR---QGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHH---TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH---cCCHHHHHHHHHHHHHh
Confidence 467777778888 88999999999888764
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.09 E-value=5.4e-09 Score=91.54 Aligned_cols=182 Identities=10% Similarity=-0.048 Sum_probs=111.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHH
Q 048578 266 KLGAALTDMYAKCGYIEEALRVFKIVLE--KN----VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDD----VTLI 335 (519)
Q Consensus 266 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~ 335 (519)
..+..+...+.+.|++++|+..|+++.+ |+ ...+..+..++.+.|++++|+..|+++.+. .|+. ..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3444556667777777777777777643 22 235666667777777777777777776653 2221 1344
Q ss_pred HHHHHHhc------------------cCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 048578 336 AVLTACSH------------------AGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEP 397 (519)
Q Consensus 336 ~l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p 397 (519)
.+..++.. .|++++|...|+++.+. .+-+...+........-.+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~------------- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLA------------- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHH-------------
Confidence 44444433 34555555555555542 1112222211111000000000
Q ss_pred CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 048578 398 NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFND---GNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVK 469 (519)
Q Consensus 398 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 469 (519)
.....+...+.. .|++++|...++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+...
T Consensus 148 --~~~~~~a~~~~~---~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 148 --KYEYSVAEYYTE---RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp --HHHHHHHHHHHH---HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred --HHHHHHHHHHHH---cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 011234455777 8999999999999999999875 578999999999999999999999998876653
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.08 E-value=6.1e-10 Score=101.96 Aligned_cols=200 Identities=11% Similarity=-0.053 Sum_probs=140.9
Q ss_pred ChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----C----hhhHHHHHHHHHHcCChHHH
Q 048578 245 ASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK-----N----VCTWNSIIGGLAIHGCGEEA 315 (519)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~a 315 (519)
+++.|...++.. ...|...|++++|...|.+..+- + ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 467777666665 34567788888888888766331 1 35788888889999999999
Q ss_pred HHHHHHHHHC----CCCCC-HHHHHHHHHHHhcc-CcHHHHHHHHHHcHHhcCCCCC----hhHHHHHHHHHHhcCChHH
Q 048578 316 VKMFWQMQMS----GIKPD-DVTLIAVLTACSHA-GLIEKGKEIFYNMRRDYKVEPN----VKHYGCLVDLLCRARLLDE 385 (519)
Q Consensus 316 ~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~ 385 (519)
+..+++..+. |-... ..++..+..+|... |++++|+..|++..+...-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9988887642 21111 34788899999996 9999999999998763111111 3568889999999999999
Q ss_pred HHHHHHhC-CCCCCH--------HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCch-----HHHHHHHHH--hc
Q 048578 386 AYEVIRNM-PMEPNA--------VLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGN-----YVLMSNIYA--AK 449 (519)
Q Consensus 386 A~~~~~~~-~~~p~~--------~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~ 449 (519)
|+..|++. .+.|+. ..+..+..++.. .|++++|...++++++++|..... +..++.+|. ..
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA---ATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH---TTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCH
Confidence 99999987 333321 156667777888 999999999999999999875443 445666665 45
Q ss_pred CCchHHHHHHHHH
Q 048578 450 AQWDDAGKMRRLM 462 (519)
Q Consensus 450 g~~~~A~~~~~~m 462 (519)
+++++|...|+++
T Consensus 254 ~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 254 EQLSEHCKEFDNF 266 (292)
T ss_dssp TTHHHHHHHHTTS
T ss_pred HHHHHHHHHhccC
Confidence 6777888777554
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.06 E-value=4.9e-10 Score=115.12 Aligned_cols=166 Identities=10% Similarity=-0.060 Sum_probs=79.0
Q ss_pred hccCChHHHHHHHHHHH--------HcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHc
Q 048578 241 ANLGASELGKWVHEFVN--------KNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIH 309 (519)
Q Consensus 241 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 309 (519)
...|++++|...++... +.. +.+...+..+..+|...|++++|++.|+++.+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 44455555555555554 221 33344445555555555555555555555432 2344455555555555
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 048578 310 GCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEV 389 (519)
Q Consensus 310 g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 389 (519)
|++++|+..|++..+.. +-+...+..+..++.+.|++++ +..|++..+. .+.+...|..+..++.+.|++++|++.
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555554421 1123344555555555555555 5555555441 122344455555555555555555555
Q ss_pred HHhC-CCCCCH-HHHHHHHHHHcc
Q 048578 390 IRNM-PMEPNA-VLWGSLLTACAS 411 (519)
Q Consensus 390 ~~~~-~~~p~~-~~~~~ll~~~~~ 411 (519)
|++. .+.|+. ..+..+..++..
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHhhcccCcccHHHHHHHHHHHHc
Confidence 5555 444442 233333334333
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.05 E-value=2.4e-08 Score=89.67 Aligned_cols=175 Identities=10% Similarity=0.024 Sum_probs=101.7
Q ss_pred HHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHcHH
Q 048578 284 ALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKP-DDVTLIAVLTACSHAGLIEKGKEIFYNMRR 359 (519)
Q Consensus 284 a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (519)
|+..|++..+ ++..+...+..++...|++++|++++.+.+..|-.+ +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4555555442 233444555666666777777777777665543212 334666666677777777777777777755
Q ss_pred hcCCCC-----ChhHHHHHHHH--HHhcC--ChHHHHHHHHhC-CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHH
Q 048578 360 DYKVEP-----NVKHYGCLVDL--LCRAR--LLDEAYEVIRNM-PMEPNAVLWGSLLTACASADDGANVELAEIAMERLI 429 (519)
Q Consensus 360 ~~~~~~-----~~~~~~~l~~~--~~~~~--~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~ 429 (519)
. .| +..+...++.+ ....| ++.+|..+|+++ ...|+..+-..++.++.. .|++++|.+.++.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~---~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQ---QRNIAEAQGIVELLL 238 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHH---HTCHHHHHHHHHHHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHH---cCCHHHHHHHHHHHH
Confidence 2 34 23444444444 22223 677777777776 334543333333445666 677777777777665
Q ss_pred hh----------CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 430 KL----------EPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 430 ~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
+. +|+++.++..++.+....|+ +|.++++++++..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 54 36666666666666666665 6667777766654
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.05 E-value=1.3e-10 Score=94.67 Aligned_cols=140 Identities=15% Similarity=0.003 Sum_probs=94.9
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCCh
Q 048578 305 GLAIHGCGEEAVKMFWQMQMSGIKPDDV-TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLL 383 (519)
Q Consensus 305 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 383 (519)
.+...|++++|+..+++.... .|+.. .+..+...|.+.|++++|+..|++..+. .+-+..+|..+..+|...|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCch
Confidence 334456667777776665532 33322 4556677777777777777777777662 234566777777777778888
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHH-HHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 048578 384 DEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEI-AMERLIKLEPFNDGNYVLMSNIYAAKAQ 451 (519)
Q Consensus 384 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (519)
++|+..|++. .+.| +...+..+...+.. .|++++|.+ +++++++++|.++.+|.....++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCK---NDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8887777776 5555 35567777777777 677665544 4588888888888888888888777774
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.05 E-value=4.5e-09 Score=95.82 Aligned_cols=175 Identities=11% Similarity=0.007 Sum_probs=139.1
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhc
Q 048578 282 EEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDY 361 (519)
Q Consensus 282 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 361 (519)
+.....+......+...+..+...+...|++++|...|++..+.. +-+...+..+..++...|++++|...++++...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~- 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ- 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-
Confidence 344444555454455667778888889999999999999988753 335668889999999999999999999998763
Q ss_pred CCCCChhHHH-HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC--C
Q 048578 362 KVEPNVKHYG-CLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN--D 436 (519)
Q Consensus 362 ~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~--~ 436 (519)
.|+..... .....+...++.++|.+.+++. ...| +...+..+...+.. .|++++|...++++++.+|.+ .
T Consensus 181 --~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~---~g~~~~A~~~l~~~l~~~p~~~~~ 255 (287)
T 3qou_A 181 --DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQ---VGRNEEALELLFGHLRXDLTAADG 255 (287)
T ss_dssp --GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTGGGG
T ss_pred --hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHH---cccHHHHHHHHHHHHhcccccccc
Confidence 34543332 3333466778888899888887 4456 56688888888999 999999999999999999987 8
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 437 GNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
.++..++.+|...|+.++|...+++..
T Consensus 256 ~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 256 QTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 899999999999999999999988754
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.04 E-value=9e-09 Score=81.48 Aligned_cols=131 Identities=15% Similarity=0.164 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHH
Q 048578 298 TWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLL 377 (519)
Q Consensus 298 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (519)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 45667777788888888888888877643 345667777888888888888888888888763 344566777888888
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 378 CRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 378 ~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
...|++++|.+.++++ ...| +...+..+...+.. .|++++|...++++.+.+|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK---QGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH---HccHHHHHHHHHHHHccCCC
Confidence 8888888888888877 3333 56677777778888 88899999999888888775
No 99
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.97 E-value=6.5e-09 Score=104.84 Aligned_cols=163 Identities=7% Similarity=-0.046 Sum_probs=125.1
Q ss_pred cCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 048578 278 CGYIEEALRVFKIVLEK---NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIF 354 (519)
Q Consensus 278 ~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 354 (519)
.|++++|++.|++..+. +...|..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47889999999988653 56788999999999999999999999998753 345678999999999999999999999
Q ss_pred HHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhC
Q 048578 355 YNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLE 432 (519)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~ 432 (519)
++..+. .+.+...+..+..+|...|++++|.+.+++. ...| +...+..+...+...++.|++++|.+.++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999883 3456788999999999999999999999998 4455 56678888888888211299999999999999999
Q ss_pred CCCCchHHHHH
Q 048578 433 PFNDGNYVLMS 443 (519)
Q Consensus 433 p~~~~~~~~l~ 443 (519)
|.+...|..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888887776
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.96 E-value=9.6e-10 Score=89.42 Aligned_cols=124 Identities=11% Similarity=0.008 Sum_probs=102.7
Q ss_pred HHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccC
Q 048578 337 VLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADD 414 (519)
Q Consensus 337 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~ 414 (519)
|...+...|++++|+..++.... ..+.+...+..+...|.+.|++++|++.|++. .+.| +..+|..+...+..
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~--- 77 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL--- 77 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---
Confidence 45567788999999999988765 22223456678999999999999999999998 6666 56788888888999
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHH-HHHHHhC
Q 048578 415 GANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKM-RRLMKER 465 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~ 465 (519)
.|++++|...|+++++++|.++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 78 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999887765 5777653
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.96 E-value=6.5e-09 Score=87.11 Aligned_cols=159 Identities=12% Similarity=0.018 Sum_probs=110.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHH-H
Q 048578 299 WNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDL-L 377 (519)
Q Consensus 299 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 377 (519)
+......+...|++++|...+++..+.. +.+...+..+..++...|++++|...|+++.+. .|+...+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence 4445566667777777777777765431 234456777777777777777777777777652 2233333222211 1
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC--CchHHHHHHHHHhcCCch
Q 048578 378 CRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN--DGNYVLMSNIYAAKAQWD 453 (519)
Q Consensus 378 ~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~ 453 (519)
...++..+|...+++. ...| +...+..+...+.. .|++++|...++++++.+|.. +..+..++.++...|+.+
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQ---VGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 2222334467777776 4456 46778888888888 999999999999999999874 568999999999999999
Q ss_pred HHHHHHHHHHh
Q 048578 454 DAGKMRRLMKE 464 (519)
Q Consensus 454 ~A~~~~~~m~~ 464 (519)
+|...|++...
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999987643
No 102
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.95 E-value=7.8e-08 Score=83.15 Aligned_cols=176 Identities=9% Similarity=-0.078 Sum_probs=126.3
Q ss_pred HHHHHhhcCC-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHcH
Q 048578 284 ALRVFKIVLE-KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAG----LIEKGKEIFYNMR 358 (519)
Q Consensus 284 a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~ 358 (519)
|.+.|++..+ .++.++..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|...|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 3344444332 356677777777777888888888888887765 55667777777777 6 7888888888887
Q ss_pred HhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHcc-ccCCCCHHHHHHHHHHHH
Q 048578 359 RDYKVEPNVKHYGCLVDLLCR----ARLLDEAYEVIRNM-PMEPN---AVLWGSLLTACAS-ADDGANVELAEIAMERLI 429 (519)
Q Consensus 359 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-~~~~~~~~~a~~~~~~~~ 429 (519)
+. -+...+..|...|.. .+++++|+++|++. ...|+ ...+..|...|.. .+..+++++|..+++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 62 355677777777776 78888888888887 44453 5566666666554 122568899999999988
Q ss_pred hhCCCCCchHHHHHHHHHhc-C-----CchHHHHHHHHHHhCCCc
Q 048578 430 KLEPFNDGNYVLMSNIYAAK-A-----QWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 430 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~~ 468 (519)
+. |.++.++..|+.+|... | ++++|...+++..+.|..
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 87 55677888888888764 3 889999999888777653
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.94 E-value=3.9e-08 Score=101.04 Aligned_cols=150 Identities=12% Similarity=0.001 Sum_probs=75.0
Q ss_pred HHcCChhHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHh
Q 048578 206 VKQKNYREGIDLFRKMR--------DSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAK 277 (519)
Q Consensus 206 ~~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 277 (519)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|...++.+.+.+ +.+...+..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 44555555555555554 211 2233444445555555555555555555555543 3344455555555555
Q ss_pred cCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 048578 278 CGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIF 354 (519)
Q Consensus 278 ~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 354 (519)
.|++++|++.|++..+ .+...|..+..++.+.|++++ +..|++..+.. +-+...+..+..++.+.|++++|...|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555555432 234445555555555555555 55555554432 223345555555555555555555555
Q ss_pred HHcHH
Q 048578 355 YNMRR 359 (519)
Q Consensus 355 ~~~~~ 359 (519)
+++.+
T Consensus 558 ~~al~ 562 (681)
T 2pzi_A 558 DEVPP 562 (681)
T ss_dssp HTSCT
T ss_pred Hhhcc
Confidence 55543
No 104
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.93 E-value=1.7e-08 Score=87.14 Aligned_cols=129 Identities=8% Similarity=-0.075 Sum_probs=94.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHh
Q 048578 300 NSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCR 379 (519)
Q Consensus 300 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (519)
..+...+.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...|+++.+. -+.+...|..+..+|..
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 337888889999999999999988753 335668888999999999999999999999873 34567788888888766
Q ss_pred cCC--hHHHHHHHHhC-CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 380 ARL--LDEAYEVIRNM-PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 380 ~~~--~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
.|+ .+.+...++.. ...|....+.....++.. .|++++|...|++++++.|+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~---~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLF---TTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHH---HHTHHHHHHHHHHHTTTSCC
T ss_pred HhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCCC
Confidence 654 44556666665 222223333444445566 78899999999999999987
No 105
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.92 E-value=1.8e-08 Score=92.86 Aligned_cols=219 Identities=13% Similarity=0.020 Sum_probs=143.2
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHH
Q 048578 208 QKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRV 287 (519)
Q Consensus 208 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 287 (519)
.|++++|.+++++..+... .. .+...++++.|...|..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 3556667766666554311 00 011135566665555443 3445666777777666
Q ss_pred HhhcCCC-----C----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHhccCcHHHHHH
Q 048578 288 FKIVLEK-----N----VCTWNSIIGGLAIHGCGEEAVKMFWQMQMS----GIKPD--DVTLIAVLTACSHAGLIEKGKE 352 (519)
Q Consensus 288 ~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~~~~~l~~~~~~~g~~~~a~~ 352 (519)
|.+..+- + ..+|+.+...|...|++++|+..|++..+. | .|. ..++..+..+|.. |++++|+.
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 6655321 1 346777788888889999999888886542 2 222 3477888888988 99999999
Q ss_pred HHHHcHHhcC---CCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC---CCC----HHHHHHHHHHHccccCCCCHHH
Q 048578 353 IFYNMRRDYK---VEP-NVKHYGCLVDLLCRARLLDEAYEVIRNM-PM---EPN----AVLWGSLLTACASADDGANVEL 420 (519)
Q Consensus 353 ~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~---~p~----~~~~~~ll~~~~~~~~~~~~~~ 420 (519)
.|++..+... ..+ ...++..+...|...|++++|++.|++. .+ .++ ...+..+...+.. .|++++
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~---~g~~~~ 213 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLH---RADYVA 213 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH---cCCHHH
Confidence 9998876211 111 1467888999999999999999999887 11 112 1255556666777 899999
Q ss_pred HHHHHHHHHhhCCCCCch-----HHHHHHHHHhcCCchHHHHH
Q 048578 421 AEIAMERLIKLEPFNDGN-----YVLMSNIYAAKAQWDDAGKM 458 (519)
Q Consensus 421 a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 458 (519)
|...+++++ ..|..... ...++.++ ..|+.+.+.++
T Consensus 214 A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 214 AQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999999 88875433 34455555 56776666553
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.90 E-value=4.4e-08 Score=98.77 Aligned_cols=147 Identities=12% Similarity=-0.067 Sum_probs=88.8
Q ss_pred cCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCChHHHHHHH
Q 048578 243 LGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEK---NVCTWNSIIGGLAIHGCGEEAVKMF 319 (519)
Q Consensus 243 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~ 319 (519)
.|++++|...+++..+.. +.+...+..+...|...|++++|.+.|++..+. +...+..+...+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 356677777777766653 445666777777777777777777777776442 4556777777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhc---CChHHHHHHHHhC
Q 048578 320 WQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRA---RLLDEAYEVIRNM 393 (519)
Q Consensus 320 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~ 393 (519)
++..+.. +.+...+..+..++...|++++|.+.|++..+. .+.+...+..+..++... |+.++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 7776642 334557777777777777777777777777662 233456667777777777 7777777777766
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.90 E-value=8.8e-08 Score=82.59 Aligned_cols=184 Identities=11% Similarity=0.043 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHH
Q 048578 197 TWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNEL-TLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMY 275 (519)
Q Consensus 197 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (519)
.+......+...|++++|+..|++..+. .|+.. .+.. . .... ...........+..+|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-~----~~~~--------------~~~~~~~~~~~lg~~~ 64 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-T----NVDK--------------NSEISSKLATELALAY 64 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-H----HSCT--------------TSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-h----hhcc--------------hhhhhHHHHHHHHHHH
Confidence 3444556677888888888888887765 34322 2211 0 0000 0011222334477788
Q ss_pred HhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc--HHHH
Q 048578 276 AKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGL--IEKG 350 (519)
Q Consensus 276 ~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~--~~~a 350 (519)
.+.|++++|+..|++..+ .+...+..+...+...|++++|+..|++..+.. +-+..++..+..++...|+ .+.+
T Consensus 65 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~ 143 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKL 143 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 888888888888887754 356778888888888999999999999888743 3345677777777765554 3444
Q ss_pred HHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHH
Q 048578 351 KEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAVLWGSL 405 (519)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~l 405 (519)
...+..... ..|....+..+..++...|++++|...|++. .+.|+......+
T Consensus 144 ~~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l 196 (208)
T 3urz_A 144 ETDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTL 196 (208)
T ss_dssp HHHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred HHHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 555555432 2233334445566777788999999999887 778886554443
No 108
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.88 E-value=8.5e-09 Score=83.45 Aligned_cols=99 Identities=9% Similarity=-0.106 Sum_probs=85.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 048578 366 NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMS 443 (519)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (519)
+...+..+...+.+.|++++|...|++. .+.| +...|..+..++.. .|++++|...|+++++++|+++.+|..++
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~---~g~~~~Ai~~~~~al~l~P~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI---KEQFQQAADLYAVAFALGKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HccHHHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 3557778888889999999999999888 5566 56678888888888 99999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHhCCC
Q 048578 444 NIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
.+|.+.|++++|...|++..+...
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999887553
No 109
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.86 E-value=1.7e-08 Score=79.16 Aligned_cols=108 Identities=10% Similarity=-0.007 Sum_probs=72.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHc
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACA 410 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 410 (519)
.+......|.+.|++++|+..|++..+. .+.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 5566666777777777777777776662 3345666677777777777777777777666 4444 3456666666677
Q ss_pred cccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 048578 411 SADDGANVELAEIAMERLIKLEPFNDGNYVLMSNI 445 (519)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (519)
. .|++++|.+.|+++++++|.++.++..+..+
T Consensus 93 ~---~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 A---MREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp H---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred H---CCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 7 7777777777777777777776666665543
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.86 E-value=9.1e-08 Score=80.02 Aligned_cols=156 Identities=14% Similarity=0.061 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC---CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-H
Q 048578 165 HSLTRLITFYCNFGDVKSAQLLFDQMTE---KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSA-C 240 (519)
Q Consensus 165 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~ 240 (519)
..+......+...|++++|...|++..+ .+...+..+..++...|++++|+..|++..... |+.......... +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 3455667778899999999999999886 456788999999999999999999999887653 344333222212 1
Q ss_pred hccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-----hhhHHHHHHHHHHcCChHHH
Q 048578 241 ANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKN-----VCTWNSIIGGLAIHGCGEEA 315 (519)
Q Consensus 241 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a 315 (519)
...+....+...++...+.. |.+...+..+..++...|++++|...|+++.+.+ ...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22223334567777777654 4456677777777777777777777777764422 33666677777777777777
Q ss_pred HHHHHHHH
Q 048578 316 VKMFWQMQ 323 (519)
Q Consensus 316 ~~~~~~m~ 323 (519)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.86 E-value=1.7e-07 Score=85.36 Aligned_cols=162 Identities=10% Similarity=-0.004 Sum_probs=121.0
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhhH-HHHHHH
Q 048578 229 NELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE--KNVCTW-NSIIGG 305 (519)
Q Consensus 229 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~-~~l~~~ 305 (519)
+...+..+...+...|++++|...++.+.+.. |.+...+..+..++...|++++|...++++.. |+.... ......
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 44556666677778888888888888887765 55677788888889999999999999988865 333222 222334
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 048578 306 LAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDE 385 (519)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 385 (519)
+...++.++|...+++..+.. +.+...+..+...+...|++++|...|.++.+...-..+...+..++..|...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 667778888888888887753 4456688888889999999999999999988842222236678888999999999888
Q ss_pred HHHHHHh
Q 048578 386 AYEVIRN 392 (519)
Q Consensus 386 A~~~~~~ 392 (519)
|...+++
T Consensus 274 a~~~~r~ 280 (287)
T 3qou_A 274 LASXYRR 280 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887765
No 112
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.85 E-value=3.2e-07 Score=83.26 Aligned_cols=226 Identities=8% Similarity=-0.042 Sum_probs=117.7
Q ss_pred HcCC-hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC--ChHHHHHHHHHHHHcCCCcchhHHHHHHHHH----Hhc-
Q 048578 207 KQKN-YREGIDLFRKMRDSGVEVNELTLVSVLSACANLG--ASELGKWVHEFVNKNCIILNDKLGAALTDMY----AKC- 278 (519)
Q Consensus 207 ~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~- 278 (519)
+.|. .++|+++++.+...+ +-+...|+.--.++...+ +++++...++.+...+ |-+..+++.-..++ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc
Confidence 4444 467888888877653 223445565555666666 7777777777777665 33344443332222 333
Q ss_pred --CCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-----
Q 048578 279 --GYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGE--EAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGL----- 346 (519)
Q Consensus 279 --g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~--~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~----- 346 (519)
+++++++.+++++.+ +|..+|+.-.-.+.+.|.++ ++++.++++.+.. .-|...|+.-...+...|.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhh
Confidence 556666666666543 24445555555555556555 6666666666543 3344455544444444444
Q ss_pred -HHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHH-HHHHHHhC-CC----CCCHHHHHHHHHHHccccCCCCHH
Q 048578 347 -IEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDE-AYEVIRNM-PM----EPNAVLWGSLLTACASADDGANVE 419 (519)
Q Consensus 347 -~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~-~~----~p~~~~~~~ll~~~~~~~~~~~~~ 419 (519)
++++++.++.+.. ..+-|...|+.+...+.+.|+..+ +.++..++ .. ..+...+..+...+.. .|+.+
T Consensus 201 ~~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~---~~~~~ 275 (306)
T 3dra_A 201 TIDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ---QKKYN 275 (306)
T ss_dssp HHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH---TTCHH
T ss_pred hHHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc---cCCHH
Confidence 5555555555554 223445555555555555554332 33344443 11 1234444555555544 45555
Q ss_pred HHHHHHHHHHh-hCCCCCchHH
Q 048578 420 LAEIAMERLIK-LEPFNDGNYV 440 (519)
Q Consensus 420 ~a~~~~~~~~~-~~p~~~~~~~ 440 (519)
+|.++++.+.+ .+|.....|.
T Consensus 276 ~A~~~~~~l~~~~Dpir~~yW~ 297 (306)
T 3dra_A 276 ESRTVYDLLKSKYNPIRSNFWD 297 (306)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHHhccChHHHHHHH
Confidence 55555555553 4554444443
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.84 E-value=5.7e-08 Score=84.97 Aligned_cols=185 Identities=9% Similarity=-0.092 Sum_probs=129.8
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC--cchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-hh---hHH
Q 048578 229 NELTLVSVLSACANLGASELGKWVHEFVNKNCII--LNDKLGAALTDMYAKCGYIEEALRVFKIVLE--KN-VC---TWN 300 (519)
Q Consensus 229 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~---~~~ 300 (519)
+...+..+...+.+.|++++|...|+.+.+.... .....+..+..+|.+.|++++|+..|+++.+ |+ .. ++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445666777889999999999999999986422 1245777889999999999999999999854 32 21 455
Q ss_pred HHHHHHHH------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHcHHhc
Q 048578 301 SIIGGLAI------------------HGCGEEAVKMFWQMQMSGIKPDDV-TLIAVLTACSHAGLIEKGKEIFYNMRRDY 361 (519)
Q Consensus 301 ~l~~~~~~------------------~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 361 (519)
.+..++.. .|++++|...|+++.+. .|+.. ....... ...+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH---
Confidence 55555554 57899999999999875 45543 2221111 001111111
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCC
Q 048578 362 KVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNA----VLWGSLLTACASADDGANVELAEIAMERLIKLEPFND 436 (519)
Q Consensus 362 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (519)
.....+...|.+.|++++|+..|+++ ...|+. ..+..+..++.. .|+.++|.+.++++....|.+.
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~---~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQ---MQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHCCSCCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHH---cCCcHHHHHHHHHHHhhCCCch
Confidence 12235677888999999999999887 444442 467777788888 9999999999999888888754
Q ss_pred c
Q 048578 437 G 437 (519)
Q Consensus 437 ~ 437 (519)
.
T Consensus 219 ~ 219 (225)
T 2yhc_A 219 E 219 (225)
T ss_dssp C
T ss_pred h
Confidence 4
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.82 E-value=1.5e-07 Score=81.25 Aligned_cols=142 Identities=12% Similarity=-0.080 Sum_probs=81.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 048578 269 AALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIE 348 (519)
Q Consensus 269 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 348 (519)
..+...+...|++++|...|++...++..+|..+...+...|++++|+..+++..+.. +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3445556666777777777776666666666666666666777777777666665532 334456666666666666666
Q ss_pred HHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCC-HHHHHHHHHHHccccCCCCHHHHHHHH
Q 048578 349 KGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM--PMEPN-AVLWGSLLTACASADDGANVELAEIAM 425 (519)
Q Consensus 349 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~ 425 (519)
+|...|++..+. .+.+.... +... ...|+ ...+..+...+.. .|++++|...+
T Consensus 89 ~A~~~~~~al~~--~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~ 144 (213)
T 1hh8_A 89 LAIKDLKEALIQ--LRGNQLID-------------------YKILGLQFKLFACEVLYNIAFMYAK---KEEWKKAEEQL 144 (213)
T ss_dssp HHHHHHHHHHHT--TTTCSEEE-------------------CGGGTBCCEEEHHHHHHHHHHHHHH---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCccHHH-------------------HHHhccccCccchHHHHHHHHHHHH---ccCHHHHHHHH
Confidence 666666666552 11111000 0000 12222 2355555556666 66777777777
Q ss_pred HHHHhhCCCC
Q 048578 426 ERLIKLEPFN 435 (519)
Q Consensus 426 ~~~~~~~p~~ 435 (519)
+++++..|.+
T Consensus 145 ~~al~~~p~~ 154 (213)
T 1hh8_A 145 ALATSMKSEP 154 (213)
T ss_dssp HHHHTTCCSG
T ss_pred HHHHHcCccc
Confidence 7777776654
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.82 E-value=1e-07 Score=82.44 Aligned_cols=127 Identities=13% Similarity=0.055 Sum_probs=105.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHc
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACA 410 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 410 (519)
.+..+...+...|++++|...|++.. .|+...|..+..+|...|++++|.+.|++. ...| +...+..+...+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 34556667778888888888887763 457778888888888888888888888877 3344 5667888888888
Q ss_pred cccCCCCHHHHHHHHHHHHhhCCCCC----------------chHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 411 SADDGANVELAEIAMERLIKLEPFND----------------GNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
. .|++++|...++++++..|.+. .++..++.+|.+.|++++|.+.+++..+...
T Consensus 83 ~---~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 83 Q---TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp H---TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred H---cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 8 8999999999999999888877 8999999999999999999999999987654
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.80 E-value=2.2e-08 Score=92.30 Aligned_cols=196 Identities=9% Similarity=-0.057 Sum_probs=148.5
Q ss_pred ccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHh-cCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 048578 242 NLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAK-CGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFW 320 (519)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 320 (519)
..|++++|..++++..+.... . +.+ .++++.|...|.+. ...|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHH
Confidence 356778888888887764311 1 122 57888888887653 567888999999999999
Q ss_pred HHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHcHHhc---CCCC-ChhHHHHHHHHHHhcCChHHHHHHHH
Q 048578 321 QMQMS----GIKPD-DVTLIAVLTACSHAGLIEKGKEIFYNMRRDY---KVEP-NVKHYGCLVDLLCRARLLDEAYEVIR 391 (519)
Q Consensus 321 ~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 391 (519)
+..+. |-.+. ..+|..+..+|...|++++|+..|++..+-. +... ...++..+..+|.. |++++|++.|+
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 87542 21111 3478889999999999999999999876621 1111 24578888999988 99999999998
Q ss_pred hC-CCCC---C----HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCC------chHHHHHHHHHhcCCchHHHH
Q 048578 392 NM-PMEP---N----AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFND------GNYVLMSNIYAAKAQWDDAGK 457 (519)
Q Consensus 392 ~~-~~~p---~----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~ 457 (519)
+. .+.| + ..++..+...+.. .|++++|...++++++..|.+. ..+..++.++...|++++|..
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVR---QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 87 1111 1 3577788888999 9999999999999998865543 367778888899999999999
Q ss_pred HHHHHH
Q 048578 458 MRRLMK 463 (519)
Q Consensus 458 ~~~~m~ 463 (519)
.+++..
T Consensus 217 ~~~~al 222 (307)
T 2ifu_A 217 CVRESY 222 (307)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999987
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.79 E-value=7.5e-07 Score=81.30 Aligned_cols=160 Identities=7% Similarity=-0.056 Sum_probs=119.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC----hhHHHH
Q 048578 302 IIGGLAIHGCGEEAVKMFWQMQMSG-IKPDDV----TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN----VKHYGC 372 (519)
Q Consensus 302 l~~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 372 (519)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...|++..+...-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4567788899999999998887632 122221 3345667778888999999999998872122223 336888
Q ss_pred HHHHHHhcCChHHHHHHHHhC-----CC--C-CC-HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC------Cc
Q 048578 373 LVDLLCRARLLDEAYEVIRNM-----PM--E-PN-AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN------DG 437 (519)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~-----~~--~-p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~ 437 (519)
+...|...|++++|...|+++ .. . +. ..++..+...|.. .|++++|...++++++..+.. +.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~---~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL---DSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 999999999999999888876 11 1 11 2367788888999 999999999999998765332 56
Q ss_pred hHHHHHHHHHhcCC-chHHHHHHHHHHh
Q 048578 438 NYVLMSNIYAAKAQ-WDDAGKMRRLMKE 464 (519)
Q Consensus 438 ~~~~l~~~~~~~g~-~~~A~~~~~~m~~ 464 (519)
+|..++.+|.+.|+ +++|.+.+++...
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88999999999995 5999999888753
No 118
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.78 E-value=1e-07 Score=78.57 Aligned_cols=127 Identities=10% Similarity=0.008 Sum_probs=101.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHc
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACA 410 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 410 (519)
.+..+...+...|++++|...|++..+. .+.+...+..+..++...|++++|.+.+++. ...| +...+..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 5666777778888888888888888773 3345777888888888889999998888887 3344 5667888888888
Q ss_pred cccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHH--HHhcCCchHHHHHHHHHHh
Q 048578 411 SADDGANVELAEIAMERLIKLEPFNDGNYVLMSNI--YAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~ 464 (519)
. .|++++|...++++++..|.+...+..+..+ +...|++++|.+.+++...
T Consensus 93 ~---~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 A---LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp H---TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8 9999999999999999999988888555554 7888999999999887754
No 119
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.77 E-value=1.8e-08 Score=81.61 Aligned_cols=98 Identities=9% Similarity=0.008 Sum_probs=79.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 048578 366 NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMS 443 (519)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (519)
+...+..+...+...|++++|...|++. ...| +...|..+..++.. .|++++|...++++++.+|+++.++..++
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~l~p~~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA---MGQYDLAIHSYSYGAVMDIXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH---HhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 4556677788888888888888888877 4455 56677777777888 88899999999999999998888999999
Q ss_pred HHHHhcCCchHHHHHHHHHHhCC
Q 048578 444 NIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
.+|...|++++|.+.|++..+..
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999888887644
No 120
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.77 E-value=5.7e-06 Score=75.03 Aligned_cols=213 Identities=13% Similarity=0.072 Sum_probs=133.7
Q ss_pred ChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcC--CHHHHHHHHhhcCCC---ChhhHHHHHHHH----HHc---CCh
Q 048578 245 ASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCG--YIEEALRVFKIVLEK---NVCTWNSIIGGL----AIH---GCG 312 (519)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~---~~~~~~~l~~~~----~~~---g~~ 312 (519)
..++|....+.++..+ |-+..+++.--.++...| ++++++++++.+... +..+|+.-...+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3456666666666665 445555666666666666 777777777776542 344555443333 344 667
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH--HHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCC------hH
Q 048578 313 EEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIE--KGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARL------LD 384 (519)
Q Consensus 313 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~ 384 (519)
++++.+++++.+.. +-+..+|+.-...+.+.|.++ ++++.++++.+. -+-|-..|+.....+...++ ++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 77777777777643 445556666666666666666 777777777762 34556666666666666665 67
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCC-HHHHHHHHHHHHhhC---CCCCchHHHHHHHHHhcCCchHHHHH
Q 048578 385 EAYEVIRNM-PMEP-NAVLWGSLLTACASADDGAN-VELAEIAMERLIKLE---PFNDGNYVLMSNIYAAKAQWDDAGKM 458 (519)
Q Consensus 385 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~-~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~ 458 (519)
++++.++++ ...| |...|+.+-..+.. .|+ .+.+..+.+++.+.+ |.++.++..++.+|.+.|+.++|.++
T Consensus 204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 204 EELNYVKDKIVKCPQNPSTWNYLLGIHER---FDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHH---TTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHh---cCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 777777666 4444 45566655555555 333 444555666666554 66677777777777777777777777
Q ss_pred HHHHHh
Q 048578 459 RRLMKE 464 (519)
Q Consensus 459 ~~~m~~ 464 (519)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777764
No 121
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.76 E-value=5.2e-08 Score=76.29 Aligned_cols=101 Identities=13% Similarity=0.128 Sum_probs=89.9
Q ss_pred CCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchH
Q 048578 363 VEPN-VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNY 439 (519)
Q Consensus 363 ~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 439 (519)
+.|+ ...+......|.+.|++++|++.|++. .+.| +...|..+..++.. .|++++|+..++++++++|.++.+|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~---~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK---LMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh---hccHHHHHHHHHHHHHhhhhhhHHH
Confidence 3444 456778899999999999999999998 5556 56788888888999 9999999999999999999999999
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 440 VLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 440 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
..++.+|...|++++|.+.|++..+..
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999987744
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.76 E-value=2.7e-07 Score=84.28 Aligned_cols=164 Identities=6% Similarity=-0.075 Sum_probs=118.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCC--CC--hh
Q 048578 298 TWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDD-----VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVE--PN--VK 368 (519)
Q Consensus 298 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~--~~ 368 (519)
.+...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|...+++..+...-. +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566777888888888888877664322111 234445666778889999999988877521111 11 44
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-----HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC-----
Q 048578 369 HYGCLVDLLCRARLLDEAYEVIRNM----PMEPN-----AVLWGSLLTACASADDGANVELAEIAMERLIKLEPF----- 434 (519)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~----~~~p~-----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~----- 434 (519)
+|+.+...|...|++++|...|++. ...|+ ..++..+...|.. .|++++|...++++++..+.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~---~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL---DSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH---HhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 7888899999999999999888776 11222 2477788888988 99999999999999876422
Q ss_pred -CCchHHHHHHHHHhcCCchHH-HHHHHHHHh
Q 048578 435 -NDGNYVLMSNIYAAKAQWDDA-GKMRRLMKE 464 (519)
Q Consensus 435 -~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 464 (519)
-..+|..++.+|.+.|++++| ...+++...
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 156788999999999999999 777877653
No 123
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.76 E-value=6.8e-07 Score=77.20 Aligned_cols=168 Identities=9% Similarity=-0.053 Sum_probs=114.8
Q ss_pred HHHHHhcCCC-CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC----ChHHHHHHHHHHH
Q 048578 183 AQLLFDQMTE-KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLG----ASELGKWVHEFVN 257 (519)
Q Consensus 183 A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~ 257 (519)
|.+.|++..+ .++.++..+...|...+++++|++.|++..+.| +...+..+...|.. + ++++|...++...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4444444433 466677777778888888888888888887765 45666666666666 5 7888888888877
Q ss_pred HcCCCcchhHHHHHHHHHHh----cCCHHHHHHHHhhcCCCC-----hhhHHHHHHHHHH----cCChHHHHHHHHHHHH
Q 048578 258 KNCIILNDKLGAALTDMYAK----CGYIEEALRVFKIVLEKN-----VCTWNSIIGGLAI----HGCGEEAVKMFWQMQM 324 (519)
Q Consensus 258 ~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~ 324 (519)
+.+ ++..+..|..+|.. .+++++|+.+|++..+.+ +.++..|...|.. .+++++|..+|++..+
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 654 45566666677766 677888888887776643 4667777777777 6778888888888776
Q ss_pred CCCCCCHHHHHHHHHHHhcc------CcHHHHHHHHHHcHH
Q 048578 325 SGIKPDDVTLIAVLTACSHA------GLIEKGKEIFYNMRR 359 (519)
Q Consensus 325 ~g~~p~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~ 359 (519)
. ..+...+..|...|... .+.++|...|+...+
T Consensus 158 ~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 158 L--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp T--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred c--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 5 22334555565555432 277788888777776
No 124
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.71 E-value=1.9e-07 Score=73.22 Aligned_cols=118 Identities=10% Similarity=-0.034 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 048578 331 DVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTA 408 (519)
Q Consensus 331 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 408 (519)
...+..+...+...|+++.|...|++..+. .+.+...+..+...+...|++++|.+.+++. ...| +...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 346677777888888888888888888773 3446677888888888888998888888877 3344 46677778888
Q ss_pred HccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCch
Q 048578 409 CASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWD 453 (519)
Q Consensus 409 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 453 (519)
+.. .|++++|...++++.+..|.++..+..++.++.+.|+++
T Consensus 90 ~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSS---LNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHH---TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHH---hCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 888 899999999999999999999999999999999888763
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.71 E-value=2.7e-07 Score=71.64 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 048578 331 DVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTA 408 (519)
Q Consensus 331 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 408 (519)
...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++ ...| +..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 346667777777788888888888877763 2345667777788888888888888888777 3233 56677777778
Q ss_pred HccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 048578 409 CASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKA 450 (519)
Q Consensus 409 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 450 (519)
+.. .|++++|...++++.+..|.++..+..++.++.+.|
T Consensus 87 ~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYK---QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHH---hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888 888999999999998888888888888887776554
No 126
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.70 E-value=5.7e-06 Score=81.08 Aligned_cols=121 Identities=11% Similarity=0.004 Sum_probs=65.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRAR-LLDEAYEVIRNM-PMEP-NAVLWGSLLTAC 409 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 409 (519)
.|...+....+.++.+.|..+|+.. +. . ..+...|...+..-...+ +.+.|..+|+.. ..-| +...+...+...
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4555555555566677777777766 31 1 123333432222222222 567777777665 1112 233344455555
Q ss_pred ccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 410 ASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
.. .|+.+.|..+++++ +.....|...+..-...|+.+.+.+++++..
T Consensus 365 ~~---~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 365 LR---IGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HH---HTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HH---cCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55 66677777777765 2234566666666666677777777666665
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.68 E-value=2.1e-07 Score=73.33 Aligned_cols=115 Identities=10% Similarity=0.025 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 048578 332 VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTAC 409 (519)
Q Consensus 332 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 409 (519)
..+..+...+...|++++|...|++..+ ..+.+...+..+..++...|++++|.+.+++. ...| +...+..+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4566666666666666666666666655 22334556666666666677777777666665 3333 455666666677
Q ss_pred ccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 048578 410 ASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQ 451 (519)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (519)
.. .|++++|...++++++.+|.+...+..++.++.+.|+
T Consensus 95 ~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EA---MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HH---TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HH---HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 77 7788888888888888888777777777777776653
No 128
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.66 E-value=9.6e-05 Score=72.38 Aligned_cols=203 Identities=13% Similarity=-0.061 Sum_probs=137.7
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHH-HHHHHhh
Q 048578 212 REGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEE-ALRVFKI 290 (519)
Q Consensus 212 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~ 290 (519)
+.+..+|+++.... +.+...|...+..+.+.|+.+.|..+++..... |.+...+.. |....+.++ ...+++.
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHH
Confidence 45677888888753 445777887888888889999999999999988 444333322 222111111 1122222
Q ss_pred cC--C-------C---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHc
Q 048578 291 VL--E-------K---NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSH-AGLIEKGKEIFYNM 357 (519)
Q Consensus 291 ~~--~-------~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~ 357 (519)
.. . + ....|...+....+.++.+.|..+|++. ... ..+...|...+..-.. .++.+.|..+|+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 11 0 0 1245667777777788999999999999 321 2344455433322222 34699999999999
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHh
Q 048578 358 RRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIK 430 (519)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~ 430 (519)
.+.++ .++..+...++.....|+.+.|..+|+.+. .....|...+..-.. .|+.+.+..+++++.+
T Consensus 347 l~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~---~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 347 LLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFM---VGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHH---HSCHHHHHHHHHHHHH
T ss_pred HHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHH
Confidence 98543 345567778888889999999999999982 256778888877777 8999999999998875
No 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.66 E-value=1.5e-07 Score=87.75 Aligned_cols=126 Identities=13% Similarity=0.006 Sum_probs=99.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC---------------hhHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN---------------VKHYGCLVDLLCRARLLDEAYEVIRNM-PME 396 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~ 396 (519)
.+..+...+.+.|++++|...|++..+. . +.+ ...|..+..+|.+.|++++|+..+++. .+.
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~-~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSW-L-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-T-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH-h-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4555555666666666666666666552 1 111 468888999999999999999999888 445
Q ss_pred C-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHH-HHHHHHHH
Q 048578 397 P-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDA-GKMRRLMK 463 (519)
Q Consensus 397 p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 463 (519)
| +...+..+..++.. .|++++|...|+++++++|.+..++..++.++.+.|++++| ..++++|.
T Consensus 227 p~~~~a~~~lg~~~~~---~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLA---VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 56788888888999 99999999999999999999999999999999999999999 44566653
No 130
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.65 E-value=1.1e-07 Score=76.26 Aligned_cols=98 Identities=11% Similarity=-0.066 Sum_probs=81.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 048578 366 NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMS 443 (519)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (519)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++.. .|++++|...++++++.+|.++..+..++
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~lg 93 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS---LGLYEQALQSYSYGALMDINEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---HhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 3455667778888889999999888887 4455 56677777777888 88999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHhCC
Q 048578 444 NIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
.+|...|++++|.+.|++..+..
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999998887643
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.65 E-value=5.6e-08 Score=88.17 Aligned_cols=189 Identities=9% Similarity=-0.082 Sum_probs=116.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048578 265 DKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTAC 341 (519)
Q Consensus 265 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 341 (519)
...+..+...+...|++++|+..|++..+ .+...|..+...+.+.|++++|+..+++..+.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34455566666667777777777666532 255667777777777788888888887776642 33455777777788
Q ss_pred hccCcHHHHHHHHHHcHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCH
Q 048578 342 SHAGLIEKGKEIFYNMRRDYKVEP---NVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANV 418 (519)
Q Consensus 342 ~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 418 (519)
...|++++|...|++..+...-.+ ....+..+ ...+...+.. .......++......+ ..+ . .|++
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~i~~~l-~~l-~---~~~~ 151 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKRWNS----IEERRIHQESELHSYL-TRL-I---AAER 151 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHHHHH----HHHTCCCCCCHHHHHH-HHH-H---HHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHHHHH----HHHHHHhhhHHHHHHH-HHH-H---HHHH
Confidence 888888888888877765210000 11111111 1112212211 1112222333333323 222 2 4688
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHhc-CCchHHHHHHHHHHhC
Q 048578 419 ELAEIAMERLIKLEPFNDGNYVLMSNIYAAK-AQWDDAGKMRRLMKER 465 (519)
Q Consensus 419 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 465 (519)
++|.+.++++.+.+|.+......+...+.+. +.+++|.++|++..+.
T Consensus 152 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 152 ERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999998777777777777766 7788999999888654
No 132
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.64 E-value=7.8e-08 Score=80.47 Aligned_cols=121 Identities=12% Similarity=0.118 Sum_probs=77.1
Q ss_pred hccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH-HccccCCCCH
Q 048578 342 SHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTA-CASADDGANV 418 (519)
Q Consensus 342 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~~~~~~~ 418 (519)
...|++++|...++...+. .+.+...|..+...|...|++++|...|++. .+.| +...+..+... +.. .|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~---~~~~ 95 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ---ASQH 95 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH---TTTC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh---cCCc
Confidence 4456666666666666552 2345566666777777777777777777666 3333 44455555555 555 6666
Q ss_pred --HHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 419 --ELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 419 --~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
++|...++++++.+|.++.++..++.+|...|++++|...+++..+...
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 7777777777777777777777777777777777777777777766443
No 133
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.62 E-value=6.6e-06 Score=74.99 Aligned_cols=158 Identities=13% Similarity=-0.037 Sum_probs=115.1
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCC---h------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHH
Q 048578 271 LTDMYAKCGYIEEALRVFKIVLEKN---V------CTWNSIIGGLAIHGCGEEAVKMFWQMQMSGI-KPD----DVTLIA 336 (519)
Q Consensus 271 l~~~~~~~g~~~~a~~~~~~~~~~~---~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ 336 (519)
.+..+...|++++|...+++..+.. . ..+..+...+...|++++|+..+++..+... .++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4667788889999998888875421 1 1233456666677899999999999887322 222 236888
Q ss_pred HHHHHhccCcHHHHHHHHHHcHHhc----CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HHHHH
Q 048578 337 VLTACSHAGLIEKGKEIFYNMRRDY----KVEPN-VKHYGCLVDLLCRARLLDEAYEVIRNM-------PMEPN-AVLWG 403 (519)
Q Consensus 337 l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~p~-~~~~~ 403 (519)
+..+|...|++++|...|+++.+.. +..+. ..++..+...|.+.|++++|.+.+++. +..+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999999887421 11122 347788999999999999999988876 22233 55777
Q ss_pred HHHHHHccccCCC-CHHHHHHHHHHHHhh
Q 048578 404 SLLTACASADDGA-NVELAEIAMERLIKL 431 (519)
Q Consensus 404 ~ll~~~~~~~~~~-~~~~a~~~~~~~~~~ 431 (519)
.+...+.. .| ++++|.+.+++++..
T Consensus 241 ~lg~~~~~---~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRK---LEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHH---TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---hCCcHHHHHHHHHHHHHH
Confidence 78888888 88 479999999988764
No 134
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.62 E-value=6.6e-08 Score=78.17 Aligned_cols=104 Identities=11% Similarity=-0.072 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 048578 332 VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTAC 409 (519)
Q Consensus 332 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 409 (519)
..+..+...+...|++++|...|+.+... -+.+...|..+..+|...|++++|+..|++. .+.| +...+..+..++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 46777778888889999999998888772 3456778888888889999999999988887 4455 456777777788
Q ss_pred ccccCCCCHHHHHHHHHHHHhhCCCCCchHH
Q 048578 410 ASADDGANVELAEIAMERLIKLEPFNDGNYV 440 (519)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (519)
.. .|++++|...|+++++..|+++....
T Consensus 100 ~~---~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 100 LQ---XGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HH---TTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HH---cCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 88 89999999999999999888776543
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.61 E-value=1.7e-06 Score=78.98 Aligned_cols=162 Identities=12% Similarity=-0.040 Sum_probs=105.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCC---Ch------hhHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCC--HH
Q 048578 267 LGAALTDMYAKCGYIEEALRVFKIVLEK---NV------CTWNSIIGGLAIHGCGEEAVKMFWQMQMSG---IKPD--DV 332 (519)
Q Consensus 267 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g---~~p~--~~ 332 (519)
.+...+..+...|++++|.+.+.+..+. .. ..+..+...+...|++++|+..+++..+.. ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566677777777777777654321 11 123344555667778888888888776431 1122 34
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHH---hcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC------CCC-H
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRR---DYKVEP--NVKHYGCLVDLLCRARLLDEAYEVIRNM-PM------EPN-A 399 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~------~p~-~ 399 (519)
+++.+...|...|++++|...|++..+ ..+..+ ...++..+...|...|++++|++.+++. .+ ... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 777888888888888888888888763 211111 1257778888888888888888888776 11 111 4
Q ss_pred HHHHHHHHHHccccCCCCHHHH-HHHHHHHHhh
Q 048578 400 VLWGSLLTACASADDGANVELA-EIAMERLIKL 431 (519)
Q Consensus 400 ~~~~~ll~~~~~~~~~~~~~~a-~~~~~~~~~~ 431 (519)
.++..+...+.. .|++++| ...++++...
T Consensus 237 ~~~~~lg~~y~~---~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRK---LEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHH---TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---cCCcHHHHHHHHHHHHHH
Confidence 567777777888 8888888 7777777653
No 136
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.60 E-value=2.5e-07 Score=72.37 Aligned_cols=97 Identities=12% Similarity=0.031 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 048578 367 VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSN 444 (519)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (519)
...|..+...+.+.|++++|+..|++. ...| +...|..+..++.. .|++++|...++++++.+|.++.+|..++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK---LMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH---hcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 345666777777888888888887776 4444 45677777777777 888888888888888888888888888888
Q ss_pred HHHhcCCchHHHHHHHHHHhCC
Q 048578 445 IYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 445 ~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
+|...|++++|...+++..+..
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhC
Confidence 8888888888888888876644
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.58 E-value=4.8e-07 Score=73.03 Aligned_cols=104 Identities=13% Similarity=-0.045 Sum_probs=86.4
Q ss_pred CCCCHH-HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 048578 327 IKPDDV-TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWG 403 (519)
Q Consensus 327 ~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~ 403 (519)
+.|+.. .+..+...+.+.|++++|...|+++.+. -+.+...|..+..+|...|++++|++.|++. .+.| +...|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 345443 7778888899999999999999999873 3456788889999999999999999999988 5556 456788
Q ss_pred HHHHHHccccCCCCHHHHHHHHHHHHhhCCCC
Q 048578 404 SLLTACASADDGANVELAEIAMERLIKLEPFN 435 (519)
Q Consensus 404 ~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (519)
.+..++.. .|++++|...|+++++..|++
T Consensus 109 ~lg~~~~~---lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 109 HTGQCQLR---LKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHH---TTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHH---cCCHHHHHHHHHHHHHhCCCH
Confidence 88888888 999999999999999999874
No 138
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.55 E-value=4.3e-07 Score=68.92 Aligned_cols=100 Identities=14% Similarity=0.024 Sum_probs=78.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC--CCchHHH
Q 048578 366 NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF--NDGNYVL 441 (519)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~ 441 (519)
+...+..+...+...|++++|...+++. ...| +...+..+...+.. .|++++|...++++++..|. +...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN---LERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 3455666777788888888888888776 3333 45667777777888 88899999999998888888 8888888
Q ss_pred HHHHHHhc-CCchHHHHHHHHHHhCCCc
Q 048578 442 MSNIYAAK-AQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 442 l~~~~~~~-g~~~~A~~~~~~m~~~~~~ 468 (519)
++.++.+. |++++|.+.+++....+..
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 99999999 9999999998888776554
No 139
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.53 E-value=2.6e-07 Score=71.72 Aligned_cols=96 Identities=18% Similarity=0.022 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 048578 369 HYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIY 446 (519)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (519)
.+..+...+.+.|++++|...|++. ...| +...|..+..++.. .|++++|+..++++++++|+++.++..++.+|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~---~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE---NEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4556778889999999999999988 5556 56678888888888 99999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhCCC
Q 048578 447 AAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 447 ~~~g~~~~A~~~~~~m~~~~~ 467 (519)
...|++++|...+++..+.+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC---
T ss_pred HHcCCHHHHHHHHHHHHHhCc
Confidence 999999999999999876543
No 140
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.53 E-value=1.1e-06 Score=69.01 Aligned_cols=100 Identities=14% Similarity=0.049 Sum_probs=89.9
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHH
Q 048578 364 EPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVL 441 (519)
Q Consensus 364 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 441 (519)
+.+...+..+...+...|++++|.+.|++. ...| +...+..+...+.. .|++++|...++++++..|.++.++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~ 89 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK---LLEFQLALKDCEECIQLEPTFIKGYTR 89 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT---TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH---hccHHHHHHHHHHHHHhCCCchHHHHH
Confidence 345678889999999999999999999998 5566 66788888888988 999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 442 MSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
++.+|.+.|++++|.+.+++..+..
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999999987654
No 141
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.53 E-value=1.1e-06 Score=77.91 Aligned_cols=124 Identities=8% Similarity=-0.088 Sum_probs=68.7
Q ss_pred HHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH----HHHHHHHHHHcc
Q 048578 336 AVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNA----VLWGSLLTACAS 411 (519)
Q Consensus 336 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~----~~~~~ll~~~~~ 411 (519)
.+...+...|++++|.+.|+.+.. + .|+......+...+.+.+++++|+..|+.....|+. ..+..+..++..
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~--~-~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPV--A-GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCC--T-TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh--c-CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH
Confidence 344555666666666666666654 1 232224444555666666666666666655222222 244445555666
Q ss_pred ccCCCCHHHHHHHHHHHHhhC--CC-CCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048578 412 ADDGANVELAEIAMERLIKLE--PF-NDGNYVLMSNIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
.|++++|+..|+++.... |. .+......+.++.+.|+.++|..+|+++...
T Consensus 184 ---LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 184 ---LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp ---TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 666666666666665322 22 2335556666666666666666666666553
No 142
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.51 E-value=5.1e-07 Score=74.38 Aligned_cols=110 Identities=15% Similarity=0.019 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 048578 330 DDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLT 407 (519)
Q Consensus 330 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 407 (519)
+...+..+...+...|++++|+..|++..+. .+.+...|..+..+|...|++++|+..|++. .+.| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3457788888889999999999999988873 3446778888889999999999999998887 5555 4667888888
Q ss_pred HHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 048578 408 ACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSN 444 (519)
Q Consensus 408 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (519)
.+.. .|++++|...++++++++|.++..+...+.
T Consensus 88 ~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 88 ARFD---MADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHH---TTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHH---ccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 8888 889999999999999999888886655443
No 143
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.51 E-value=4.2e-07 Score=71.20 Aligned_cols=94 Identities=7% Similarity=0.003 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCc-------h
Q 048578 368 KHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDG-------N 438 (519)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~ 438 (519)
..+..+...+.+.|++++|++.|++. .+.| +...|..+..+|.. .|++++|+..++++++++|.+.. +
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE---EKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH---hhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 34556677777777777777777766 4445 34566666667777 77777777777777777765443 5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 439 YVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
|..++.++...|++++|.+.|++..+
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56667777777788888887777655
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.50 E-value=1.1e-06 Score=75.00 Aligned_cols=132 Identities=16% Similarity=0.020 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHcHHh---cCCCC--C
Q 048578 297 CTWNSIIGGLAIHGCGEEAVKMFWQMQM----SGIKPD-DVTLIAVLTACSHAGLIEKGKEIFYNMRRD---YKVEP--N 366 (519)
Q Consensus 297 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~--~ 366 (519)
.++..+...+...|++++|...+++..+ .|..|. ..++..+...+...|++++|...+++..+. .+..+ .
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3444444455555555555555554432 111111 224455555555555555555555554442 11011 1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhh
Q 048578 367 VKHYGCLVDLLCRARLLDEAYEVIRNM----PMEPN----AVLWGSLLTACASADDGANVELAEIAMERLIKL 431 (519)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 431 (519)
...+..+...+...|++++|...+++. ....+ ..++..+...+.. .|++++|...++++++.
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ---EKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH---CcCHHHHHHHHHHHHHH
Confidence 233445555555555555555555443 00011 1123344444555 55555555555555443
No 145
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.50 E-value=3e-06 Score=75.06 Aligned_cols=135 Identities=12% Similarity=-0.055 Sum_probs=83.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC--hhHHHHHHHHH
Q 048578 300 NSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN--VKHYGCLVDLL 377 (519)
Q Consensus 300 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~ 377 (519)
..+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 34455666777777777777766543 344445555555677777777777777755431 1 111 23566677777
Q ss_pred HhcCChHHHHHHHHhC--CCC-CC-H-HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 048578 378 CRARLLDEAYEVIRNM--PME-PN-A-VLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLM 442 (519)
Q Consensus 378 ~~~~~~~~A~~~~~~~--~~~-p~-~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 442 (519)
...|++++|+..|++. +-. |. . ........++.. .|+.++|...|+++...+|. +..+..|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~---lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS---QGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 7788888888777776 211 43 2 234444445666 77788888888888887776 5544444
No 146
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.50 E-value=8.6e-07 Score=69.23 Aligned_cols=111 Identities=9% Similarity=-0.058 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 048578 332 VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTAC 409 (519)
Q Consensus 332 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 409 (519)
..+..+...+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|+..+++. .+.| +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 35556666677777777777777777662 3345667777777777777777777777776 4444 355666677777
Q ss_pred ccccCCCCHHHHHHHHHHHHhhC------CCCCchHHHHHHHHH
Q 048578 410 ASADDGANVELAEIAMERLIKLE------PFNDGNYVLMSNIYA 447 (519)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 447 (519)
.. .|++++|...++++++.+ |.++.++..+..+..
T Consensus 83 ~~---~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IA---VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HH---TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HH---HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 77 778888888888888877 666666665555443
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.50 E-value=1.8e-06 Score=66.11 Aligned_cols=108 Identities=16% Similarity=0.025 Sum_probs=61.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHc
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACA 410 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 410 (519)
.+..+...+...|++++|...|++.... .+.+...+..+...+...|++++|...+++. ...| +...+..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4445555555666666666666665552 2234455555566666666666666666555 2233 3445555555566
Q ss_pred cccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 048578 411 SADDGANVELAEIAMERLIKLEPFNDGNYVLMSNI 445 (519)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (519)
. .|++++|...++++.+.+|.++..+..+..+
T Consensus 84 ~---~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 F---LNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp H---TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred H---HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 6 6666666666666666666665555555443
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.50 E-value=1.1e-06 Score=73.40 Aligned_cols=127 Identities=9% Similarity=0.007 Sum_probs=98.7
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHH-HHhcCCh--
Q 048578 307 AIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDL-LCRARLL-- 383 (519)
Q Consensus 307 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-- 383 (519)
...|++++|...+++..+.. +.+...+..+..+|...|++++|...|++..+. .+.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 35678888888888887653 446678888999999999999999999998873 23466778888888 7788998
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchH
Q 048578 384 DEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNY 439 (519)
Q Consensus 384 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 439 (519)
++|...+++. ...| +...+..+...+.. .|++++|...++++++..|.++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFM---QANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---cccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999888 4455 45677778888888 8999999999999999999876543
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.49 E-value=8.5e-07 Score=75.65 Aligned_cols=96 Identities=11% Similarity=-0.076 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 048578 368 KHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNI 445 (519)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (519)
..|..+..+|...|++++|+..+++. .+.| +...+..+..++.. .|++++|...++++++.+|.++.++..+..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY---FGFLEEAKENLYKAASLNPNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH---cccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 67778888888999999999988887 4444 56678888888888 8999999999999999999999999999999
Q ss_pred HHhcCCchHHH-HHHHHHHhCC
Q 048578 446 YAAKAQWDDAG-KMRRLMKERN 466 (519)
Q Consensus 446 ~~~~g~~~~A~-~~~~~m~~~~ 466 (519)
+...|+.+++. ..+..|-..+
T Consensus 166 ~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 166 VNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 99988888777 5565554433
No 150
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.48 E-value=1.5e-06 Score=68.95 Aligned_cols=99 Identities=14% Similarity=0.052 Sum_probs=78.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 048578 365 PNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLM 442 (519)
Q Consensus 365 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 442 (519)
.+...+..+...+...|++++|...|++. ...| +...+..+...+.. .|++++|...++++++.+|.++.++..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK---MQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 45667777788888888888888888776 3344 45677777777888 8888888888888888888888888888
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCC
Q 048578 443 SNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 443 ~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
+.+|...|++++|...+++..+..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHC
Confidence 888888888888888888887644
No 151
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.48 E-value=1.4e-06 Score=71.77 Aligned_cols=95 Identities=15% Similarity=-0.071 Sum_probs=60.7
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHH
Q 048578 296 VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVD 375 (519)
Q Consensus 296 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 375 (519)
...+..+...+...|++++|+..|++..+.. +-+...+..+..++...|++++|+..|++..+. .+.+...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3455666666667777777777777666542 224556666666677777777777777766662 2334566666667
Q ss_pred HHHhcCChHHHHHHHHhC
Q 048578 376 LLCRARLLDEAYEVIRNM 393 (519)
Q Consensus 376 ~~~~~~~~~~A~~~~~~~ 393 (519)
+|...|++++|.+.|++.
T Consensus 88 ~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 777777777777766665
No 152
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.48 E-value=5.9e-07 Score=71.95 Aligned_cols=105 Identities=13% Similarity=-0.006 Sum_probs=79.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHc
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACA 410 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 410 (519)
.+..+...+.+.|++++|...|+.+... .+.+...|..+..+|...|++++|+..|++. .+.| +...+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 5666677778888888888888888762 3446677778888888888888888888877 4444 4456667777788
Q ss_pred cccCCCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 048578 411 SADDGANVELAEIAMERLIKLEPFNDGNYVLM 442 (519)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 442 (519)
. .|++++|...++++++..|.++......
T Consensus 98 ~---~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 98 Q---LGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp H---TTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred H---cCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 8 8889999999999888888777665543
No 153
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.48 E-value=6.4e-07 Score=81.16 Aligned_cols=92 Identities=7% Similarity=-0.107 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC--C-chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 048578 166 SLTRLITFYCNFGDVKSAQLLFDQMTE--K-NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACAN 242 (519)
Q Consensus 166 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 242 (519)
.+..+...+...|++++|...|++... | +...|..+..+|.+.|++++|...+++..+.. +.+...+..+..++..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344444455555555555555554432 2 34445555555555555555555555554432 1233344444444555
Q ss_pred cCChHHHHHHHHHHHH
Q 048578 243 LGASELGKWVHEFVNK 258 (519)
Q Consensus 243 ~~~~~~a~~~~~~~~~ 258 (519)
.|++++|...++...+
T Consensus 85 ~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 85 MESYDEAIANLQRAYS 100 (281)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555444443
No 154
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.48 E-value=1.8e-06 Score=73.66 Aligned_cols=84 Identities=10% Similarity=-0.047 Sum_probs=46.3
Q ss_pred HhcCChHHHHH---HHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCCh
Q 048578 175 CNFGDVKSAQL---LFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDS----GVEV-NELTLVSVLSACANLGAS 246 (519)
Q Consensus 175 ~~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~ 246 (519)
...|++++|.+ .+..-......++..+...+...|++++|...+++.... +..+ ...++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34577777777 554433234556677777777777777777777766541 1111 223444555555666666
Q ss_pred HHHHHHHHHHHH
Q 048578 247 ELGKWVHEFVNK 258 (519)
Q Consensus 247 ~~a~~~~~~~~~ 258 (519)
+.|...+++..+
T Consensus 83 ~~A~~~~~~al~ 94 (203)
T 3gw4_A 83 DAARRCFLEERE 94 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666555444
No 155
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.47 E-value=0.00013 Score=66.96 Aligned_cols=173 Identities=9% Similarity=-0.053 Sum_probs=105.8
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhc-C-CHH
Q 048578 206 VKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLG-ASELGKWVHEFVNKNCIILNDKLGAALTDMYAKC-G-YIE 282 (519)
Q Consensus 206 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~ 282 (519)
.+.+..++|+++++.+...+ +-+...|+.--.++...+ +++++..+++.+...+ +-+..+++.-..++... + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 34444567777777777653 123444555555555556 4777777777777655 44555555555555554 5 677
Q ss_pred HHHHHHhhcCCC---ChhhHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-----
Q 048578 283 EALRVFKIVLEK---NVCTWNSIIGGLAIHGCGE--------EAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGL----- 346 (519)
Q Consensus 283 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~--------~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~----- 346 (519)
+++++++++.+. |..+|+.-.-.+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.+.
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence 788888777664 4445555444444445555 7778888877654 4456677777666666665
Q ss_pred --HHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCCh
Q 048578 347 --IEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLL 383 (519)
Q Consensus 347 --~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 383 (519)
++++++.+++... ..+-|...|+.+-..+.+.|+.
T Consensus 222 ~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 222 RSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCC
Confidence 5677777777766 2345566676666666655543
No 156
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.46 E-value=1.2e-05 Score=73.79 Aligned_cols=219 Identities=13% Similarity=0.022 Sum_probs=154.9
Q ss_pred ccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcC-CHHHHHHHHhhcCCC---ChhhHHHHHHHHHHc-C-ChHHH
Q 048578 242 NLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCG-YIEEALRVFKIVLEK---NVCTWNSIIGGLAIH-G-CGEEA 315 (519)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~-g-~~~~a 315 (519)
+.+..+.|..+.+.++..+ +-+..+++.--.++...| .+++++++++.+... +..+|+.-...+... + +++++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHH
Confidence 3445667888899988876 556667777777777778 599999999998654 556777777677666 7 89999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH--------HHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCC-----
Q 048578 316 VKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIE--------KGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARL----- 382 (519)
Q Consensus 316 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 382 (519)
+++++++.+.. +-|...|+.-...+.+.|.++ ++++.++++.+. .+-|...|+.....+.+.++
T Consensus 145 L~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 145 IEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccch
Confidence 99999998754 446667776665665555555 899999999883 45677889988888888876
Q ss_pred --hHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCC-----------------CHHHHHHHHHHHHhhC------CCC
Q 048578 383 --LDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGA-----------------NVELAEIAMERLIKLE------PFN 435 (519)
Q Consensus 383 --~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~-----------------~~~~a~~~~~~~~~~~------p~~ 435 (519)
++++++.++++ ...| |...|+.+-..+...+... ...........+.... +.+
T Consensus 222 ~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 68888888877 5566 5556766555555522110 1233333333333222 456
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 436 DGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
+.++..++.+|...|+.++|.++++.+.+
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 77888999999999999999999999864
No 157
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=1.8e-06 Score=69.33 Aligned_cols=95 Identities=13% Similarity=-0.007 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHH
Q 048578 367 VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN----AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVL 441 (519)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 441 (519)
...+..+...+...|++++|.+.|++. ...|+ ...+..+...+.. .|++++|...++++++..|.++..+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK---LEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH---HccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 344555555555555555555555554 44444 3344445455555 556666666666666665555555556
Q ss_pred HHHHHHhcCCchHHHHHHHHHHh
Q 048578 442 MSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
++.+|...|++++|...+++..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666655544
No 158
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.46 E-value=2.6e-06 Score=69.88 Aligned_cols=127 Identities=9% Similarity=-0.117 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHH
Q 048578 298 TWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLL 377 (519)
Q Consensus 298 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (519)
.+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+. .+.+...|..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 45556666667777777777777766542 334566777777777777777777777777662 234566677777777
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHHHHHH--HHHHHccccCCCCHHHHHHHHHHHHh
Q 048578 378 CRARLLDEAYEVIRNM-PMEP-NAVLWGS--LLTACASADDGANVELAEIAMERLIK 430 (519)
Q Consensus 378 ~~~~~~~~A~~~~~~~-~~~p-~~~~~~~--ll~~~~~~~~~~~~~~a~~~~~~~~~ 430 (519)
...|++++|...+++. ...| +...+.. ....+.. .|++++|...+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK---QKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH---HHHHHHHHHcccchHH
Confidence 7777777777777776 3333 3333322 2222455 6677777777776544
No 159
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.45 E-value=1.5e-06 Score=67.28 Aligned_cols=97 Identities=21% Similarity=0.265 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 048578 367 VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSN 444 (519)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (519)
...+..+...+...|++++|.+.++++ ...| +..++..+...+.. .|++++|...++++.+..|.++..+..++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK---QGDYDEAIEYYQKALELDPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 567888999999999999999999988 3334 56788888888999 999999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHHhCC
Q 048578 445 IYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 445 ~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
+|...|++++|...++++.+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhC
Confidence 9999999999999999987654
No 160
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.44 E-value=1.9e-06 Score=65.95 Aligned_cols=99 Identities=14% Similarity=0.122 Sum_probs=87.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 048578 366 NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMS 443 (519)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (519)
....+..++..+...|++++|...+++. ...| +...+..+...+.. .|++++|...++++.+..|.++..+..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 79 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK---KGDYQKAYEDGCKTVDLKPDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh---hccHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 4567788899999999999999999998 4445 66778888888888 89999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHhCCC
Q 048578 444 NIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
.++...|++++|.+.+++..+.+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCC
Confidence 999999999999999999877543
No 161
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.40 E-value=9.1e-05 Score=67.59 Aligned_cols=197 Identities=10% Similarity=-0.025 Sum_probs=108.6
Q ss_pred hHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcC--CHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCC-hHHHHHHH
Q 048578 246 SELGKWVHEFVNKNCIILNDKLGAALTDMYAKCG--YIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGC-GEEAVKMF 319 (519)
Q Consensus 246 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~-~~~a~~~~ 319 (519)
++.+..+++.+...+ |-+..+++.-.-++...| .+++++.+++++.+ .|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 345555566655544 445555555444455555 36666666666644 355566655555566666 46777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhcc--------------CcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhc-----
Q 048578 320 WQMQMSGIKPDDVTLIAVLTACSHA--------------GLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRA----- 380 (519)
Q Consensus 320 ~~m~~~g~~p~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 380 (519)
+++++.. +-|...|+.....+... +.++++++.+..... -.+-|...|+.+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccc
Confidence 7776654 33445555544444333 346677777777665 2344556665544444443
Q ss_pred ------CChHHHHHHHHhC-CCCCCH-HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 048578 381 ------RLLDEAYEVIRNM-PMEPNA-VLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIY 446 (519)
Q Consensus 381 ------~~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (519)
+.++++++.++++ .+.|+. ..+..++.........+..+++...+.++++++|....-|..+...+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 3456677777666 445543 22222221111111156677777788888888877555555554433
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.37 E-value=2.1e-06 Score=67.96 Aligned_cols=113 Identities=9% Similarity=-0.096 Sum_probs=79.4
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 048578 329 PDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLL 406 (519)
Q Consensus 329 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll 406 (519)
.+...+..+...+...|++++|...|+...+. .+.+...|..+..++...|++++|...+++. .+.| +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 34567777777777888888888888777762 2345667777788888888888888887776 3344 455677777
Q ss_pred HHHccccCCCCHHHHHHHHHHHHhhCCC-----CCchHHHHHHHH
Q 048578 407 TACASADDGANVELAEIAMERLIKLEPF-----NDGNYVLMSNIY 446 (519)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~ 446 (519)
..+.. .|++++|...++++++..|. +......+..+.
T Consensus 85 ~~~~~---~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 85 QCQLE---MESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHH---TTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHH---HhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 77777 88888888888888887766 444444444433
No 163
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.36 E-value=2.3e-06 Score=66.80 Aligned_cols=99 Identities=16% Similarity=0.106 Sum_probs=88.1
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 048578 365 PNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLM 442 (519)
Q Consensus 365 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 442 (519)
.+...+..+...+...|++++|.+.+++. ...| +...+..+...+.. .|++++|...++++.+..|.++..+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 86 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK---LGNYAGAVQDCERAICIDPAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---hhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence 34567888899999999999999999988 4344 66788888888988 9999999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCC
Q 048578 443 SNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 443 ~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
+.+|...|++++|.+.+++..+..
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC
Confidence 999999999999999999987753
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.33 E-value=1.1e-06 Score=86.01 Aligned_cols=120 Identities=10% Similarity=-0.003 Sum_probs=96.3
Q ss_pred HHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccC
Q 048578 337 VLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADD 414 (519)
Q Consensus 337 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~ 414 (519)
+...+.+.|++++|.+.|++..+. .+.+...|..+..+|.+.|++++|++.+++. .+.| +...+..+..++..
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~--- 86 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA--- 86 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH---
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---
Confidence 344567788999999999988873 3445788888999999999999999999888 5556 56678888888888
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCchHHHHHHH--HHhcCCchHHHHHHHH
Q 048578 415 GANVELAEIAMERLIKLEPFNDGNYVLMSNI--YAAKAQWDDAGKMRRL 461 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 461 (519)
.|++++|.+.++++++.+|.+..++..++.+ +.+.|++++|.+.+++
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 8999999999999999999999999998888 8888999999999873
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=7.4e-06 Score=65.64 Aligned_cols=112 Identities=12% Similarity=-0.018 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 048578 330 DDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN----VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWG 403 (519)
Q Consensus 330 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~ 403 (519)
+...+..+...+...|++++|...|++..+ ..|+ ...|..+..+|...|++++|...+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 345666666667777777777777777665 2333 456666777777777777777777766 3334 455666
Q ss_pred HHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 048578 404 SLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYA 447 (519)
Q Consensus 404 ~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (519)
.+...+.. .|++++|...++++++.+|.+...+..+..+..
T Consensus 104 ~~a~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEK---LGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHH---HTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHH---cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 66667777 778888888888888888877666666655543
No 166
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.32 E-value=2.2e-06 Score=68.49 Aligned_cols=93 Identities=13% Similarity=-0.052 Sum_probs=69.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhh-----
Q 048578 371 GCLVDLLCRARLLDEAYEVIRNM-PMEPN-------------AVLWGSLLTACASADDGANVELAEIAMERLIKL----- 431 (519)
Q Consensus 371 ~~l~~~~~~~~~~~~A~~~~~~~-~~~p~-------------~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~----- 431 (519)
......+...|++++|++.|++. .+.|+ ...|..+..++.. .|++++|+..+++++++
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~---Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG---LRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhhhccc
Confidence 33444455555555555555544 22222 2377777777888 88899999999999888
Q ss_pred --CCCCCchH----HHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 432 --EPFNDGNY----VLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 432 --~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
+|++..+| ...+.++...|++++|+..|++..+..
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999 999999999999999999999987643
No 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.31 E-value=3.6e-06 Score=63.64 Aligned_cols=99 Identities=15% Similarity=0.021 Sum_probs=64.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP---NAVLWGSLLTA 408 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p---~~~~~~~ll~~ 408 (519)
.+..+...+...|++++|...|++..+. .+.+...+..+..++...|++++|.+.+++. ...| +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 4455556666667777777776666652 2334556666677777777777777777666 3333 35566666666
Q ss_pred HccccCC-CCHHHHHHHHHHHHhhCCCCC
Q 048578 409 CASADDG-ANVELAEIAMERLIKLEPFND 436 (519)
Q Consensus 409 ~~~~~~~-~~~~~a~~~~~~~~~~~p~~~ 436 (519)
+.. . |++++|.+.++++.+..|.++
T Consensus 86 ~~~---~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRY---IEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTT---CSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHH---HhCCHHHHHHHHHHHhhcccCCC
Confidence 777 7 777777777777777776643
No 168
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.30 E-value=5.4e-06 Score=80.70 Aligned_cols=129 Identities=12% Similarity=0.024 Sum_probs=92.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCC-------------ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEP-------------NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP- 397 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p- 397 (519)
.+..+...+.+.|++++|+..|++..+.....+ ....|..+..+|.+.|++++|+..+++. .+.|
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 444445555555555555555555544211110 1467888999999999999999999888 4455
Q ss_pred CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHH-HHHHHHh
Q 048578 398 NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGK-MRRLMKE 464 (519)
Q Consensus 398 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~~ 464 (519)
+...|..+..++.. .|++++|...|+++++++|.+..++..++.++.+.|++++|.+ .+++|-.
T Consensus 350 ~~~a~~~~g~a~~~---~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 350 NEKGLYRRGEAQLL---MNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp CHHHHHHHHHHHHH---TTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788888889999 9999999999999999999999999999999999999998875 4555543
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.30 E-value=2.2e-06 Score=67.03 Aligned_cols=109 Identities=4% Similarity=-0.080 Sum_probs=62.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC----CCC----HHHHH
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PM----EPN----AVLWG 403 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~----~p~----~~~~~ 403 (519)
.+..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|...+++. .. .++ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 4445555555566666666666655552 2334455555666666666666666666555 11 112 44555
Q ss_pred HHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 048578 404 SLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYA 447 (519)
Q Consensus 404 ~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (519)
.+...+.. .|++++|...++++.+..| ++.....+..+..
T Consensus 84 ~la~~~~~---~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFK---EEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHH---TTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHH---hccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 66666666 6777777777777777766 3555555554443
No 170
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.30 E-value=2.4e-06 Score=66.83 Aligned_cols=89 Identities=15% Similarity=0.115 Sum_probs=43.9
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC---CchHHHHHH
Q 048578 373 LVDLLCRARLLDEAYEVIRNM-PMEPNA----VLWGSLLTACASADDGANVELAEIAMERLIKLEPFN---DGNYVLMSN 444 (519)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 444 (519)
+...+...|++++|...|++. ...|+. ..+..+...+.. .|++++|...++++++..|++ +.++..++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA---TRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 334444455555555555444 112211 233344444444 555555555555555555555 444555555
Q ss_pred HHHhcCCchHHHHHHHHHHh
Q 048578 445 IYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 445 ~~~~~g~~~~A~~~~~~m~~ 464 (519)
+|...|++++|...++++.+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555544
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=1.6e-05 Score=76.93 Aligned_cols=162 Identities=6% Similarity=-0.131 Sum_probs=90.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHcHHh---cCCCC-ChhH
Q 048578 299 WNSIIGGLAIHGCGEEAVKMFWQMQMS-GIKPDD----VTLIAVLTACSHAGLIEKGKEIFYNMRRD---YKVEP-NVKH 369 (519)
Q Consensus 299 ~~~l~~~~~~~g~~~~a~~~~~~m~~~-g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~-~~~~ 369 (519)
+..+...|...|++++|.+.+.++... +..++. .+.+.+...+...|+++.|..++...... .+..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 455566666666666666666665431 111111 12233333444556677777666655431 11111 2345
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-----C--CCCC-HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhC---CCC---
Q 048578 370 YGCLVDLLCRARLLDEAYEVIRNM-----P--MEPN-AVLWGSLLTACASADDGANVELAEIAMERLIKLE---PFN--- 435 (519)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~-----~--~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~---p~~--- 435 (519)
+..++..|...|++++|..++++. + .+|. ..++..++..|.. .|++++|..+++++.... +.+
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~ 214 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK---LRNLAKSKASLTAARTAANSIYCPTQT 214 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH---hCcHHHHHHHHHHHHHHhhcCCCchHH
Confidence 666777777777777777776655 1 1222 2356666666777 777777777777766543 211
Q ss_pred -CchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 436 -DGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 436 -~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
...+..++..+...|++++|...+.+..
T Consensus 215 ~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 215 VAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2345566666667777777777665554
No 172
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.28 E-value=3e-06 Score=66.23 Aligned_cols=96 Identities=11% Similarity=0.003 Sum_probs=45.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC----C----HHHHHH
Q 048578 334 LIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP----N----AVLWGS 404 (519)
Q Consensus 334 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p----~----~~~~~~ 404 (519)
+..+...+.+.|++++|+..|++..+. .+.+...|..+..+|...|++++|++.+++. .+.| + ..+|..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 334444444444444444444444441 1223344444444455555555554444443 1111 1 123444
Q ss_pred HHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 405 LLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 405 ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
+...+.. .|++++|++.|+++++..|+
T Consensus 89 lg~~~~~---~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 89 AGNAFQK---QNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHH---TTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHH---cCCHHHHHHHHHHHHhhCcC
Confidence 4455555 66666666666666666553
No 173
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.27 E-value=0.00015 Score=66.14 Aligned_cols=184 Identities=11% Similarity=0.036 Sum_probs=132.5
Q ss_pred HHHHHHHHhhcCC---CChhhHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-HHHHHHHH
Q 048578 281 IEEALRVFKIVLE---KNVCTWNSIIGGLAIHG--CGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGL-IEKGKEIF 354 (519)
Q Consensus 281 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-~~~a~~~~ 354 (519)
+++++.+++.+.. .+..+|+.-.-.+...| .+++++.+++++.+.. +-|...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5677777777754 46677887777777777 4899999999998865 5567788777777777887 68999999
Q ss_pred HHcHHhcCCCCChhHHHHHHHHHHhc--------------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccC----
Q 048578 355 YNMRRDYKVEPNVKHYGCLVDLLCRA--------------RLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADD---- 414 (519)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~---- 414 (519)
+.+.+. .+-|...|+.....+... +.++++++.+++. ...| |...|+.+-..+.....
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 999883 456777888777776665 4578888888887 4556 55566655544444100
Q ss_pred ----CCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH---HhcCCchHHHHHHHHHHhCCC
Q 048578 415 ----GANVELAEIAMERLIKLEPFNDGNYVLMSNIY---AAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 415 ----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~~~~ 467 (519)
.+.++++++.++++++..|++.-.+..++... ...|..+++...+.++++.+.
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 04588999999999999999744444333322 245778889999999987444
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.27 E-value=1.1e-05 Score=62.94 Aligned_cols=104 Identities=14% Similarity=0.066 Sum_probs=65.8
Q ss_pred HHHHHHhccCcHHHHHHHHHHcHHhcCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 048578 336 AVLTACSHAGLIEKGKEIFYNMRRDYKVEPNV---KHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN----AVLWGSLLT 407 (519)
Q Consensus 336 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~----~~~~~~ll~ 407 (519)
.+...+...|++++|...|+.+.+. .+.+. ..+..+..++...|++++|...|++. ...|+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 3445566667777777777776652 12222 35666677777777777777777666 33333 345666666
Q ss_pred HHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 048578 408 ACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSN 444 (519)
Q Consensus 408 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (519)
.+.. .|++++|...++++++..|+++........
T Consensus 85 ~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 85 SQYG---EGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHHH---TTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHH---cCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 6777 778888888888888888776555444333
No 175
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=0.00024 Score=68.48 Aligned_cols=189 Identities=6% Similarity=-0.113 Sum_probs=134.8
Q ss_pred HHHHHhcCChHHHHHHHhcCCC--C---c---------------hhHHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCCC
Q 048578 171 ITFYCNFGDVKSAQLLFDQMTE--K---N---------------VVTWTAMINGHVKQKNYREGIDLFRKMRDS-GVEVN 229 (519)
Q Consensus 171 ~~~~~~~g~~~~A~~~~~~~~~--~---~---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~ 229 (519)
...+.+.|++++|++.|..+.+ + + ..++..+...|...|++++|.+.+..+... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456778999999999887643 1 1 124677889999999999999999887653 11122
Q ss_pred HH----HHHHHHHHHhccCChHHHHHHHHHHHHc----C-CCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC----C--
Q 048578 230 EL----TLVSVLSACANLGASELGKWVHEFVNKN----C-IILNDKLGAALTDMYAKCGYIEEALRVFKIVLE----K-- 294 (519)
Q Consensus 230 ~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-- 294 (519)
.. +.+.+-..+...|+.+.+..++...... + ...-..++..+...|...|++++|..++.++.. .
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 21 2233334455678899999888877542 2 223356778899999999999999999887622 1
Q ss_pred ---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHcHH
Q 048578 295 ---NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMS----GIKPD--DVTLIAVLTACSHAGLIEKGKEIFYNMRR 359 (519)
Q Consensus 295 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (519)
...++..++..|...|++++|..++++.... +..|. ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2357888899999999999999999887532 21222 23567777788899999999988877755
No 176
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.23 E-value=5.3e-06 Score=70.59 Aligned_cols=117 Identities=15% Similarity=-0.025 Sum_probs=56.7
Q ss_pred HHHHhcCChHHHHHHHhcCCC---CchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CC--------------HHHH
Q 048578 172 TFYCNFGDVKSAQLLFDQMTE---KNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVE-VN--------------ELTL 233 (519)
Q Consensus 172 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~--------------~~~~ 233 (519)
......|+++++.+.|+.... .....+..+...+...|++++|...|++....... |+ ...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 334455666666666654433 23446777788888999999999999888764211 10 1344
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHh
Q 048578 234 VSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFK 289 (519)
Q Consensus 234 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 289 (519)
..+..++...|+++.|...++...+.. +.+...+..+..+|...|++++|...|+
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 444444444455555554444444432 2233333333344444444444443333
No 177
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.22 E-value=2e-05 Score=73.30 Aligned_cols=151 Identities=11% Similarity=-0.056 Sum_probs=71.5
Q ss_pred CChHHHHHHHhcCCC--C-chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 048578 178 GDVKSAQLLFDQMTE--K-NVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHE 254 (519)
Q Consensus 178 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 254 (519)
+++++|...|+.... | +...|..+...+.+.|++++|+..|++..+....... + ..+.+..+-
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~-----------~~~~~~~~~- 192 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--F-----------SNEEAQKAQ- 192 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--C-----------CSHHHHHHH-
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc--C-----------ChHHHHHHH-
Confidence 334444444444332 2 3456777777788888888888888877765322110 0 000000000
Q ss_pred HHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 048578 255 FVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDD 331 (519)
Q Consensus 255 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 331 (519)
+.....+..+..+|.+.|++++|+..|+++.+ .+..+|..+..++...|++++|...|++..+.. +-+.
T Consensus 193 -------~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~ 264 (336)
T 1p5q_A 193 -------ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNK 264 (336)
T ss_dssp -------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCH
T ss_pred -------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCH
Confidence 00122333344444444444444444444322 234445555555555555555555555555431 2233
Q ss_pred HHHHHHHHHHhccCcHHHH
Q 048578 332 VTLIAVLTACSHAGLIEKG 350 (519)
Q Consensus 332 ~~~~~l~~~~~~~g~~~~a 350 (519)
..+..+..++...|+.++|
T Consensus 265 ~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 265 AAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555
No 178
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.21 E-value=4e-06 Score=64.85 Aligned_cols=93 Identities=9% Similarity=0.035 Sum_probs=43.5
Q ss_pred HHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccC
Q 048578 337 VLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADD 414 (519)
Q Consensus 337 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~ 414 (519)
+...+.+.|++++|...|++..+. .+.+...|..+..++...|++++|+..|++. .+.| +...+..+...+..
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~--- 97 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN--- 97 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---
Confidence 333444455555555555555441 2223444555555555555555555555544 3333 23344444444555
Q ss_pred CCCHHHHHHHHHHHHhhCCC
Q 048578 415 GANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~ 434 (519)
.|++++|...++++++.+|.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHhCcC
Confidence 55555555555555555554
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.21 E-value=3.2e-06 Score=66.04 Aligned_cols=96 Identities=14% Similarity=0.111 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC-------Cc
Q 048578 367 VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN-------DG 437 (519)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~ 437 (519)
...+..+...+...|++++|...|++. ...| +...+..+...+.. .|++++|...++++.+..|.+ +.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE---KGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH---hccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 456788899999999999999999988 3344 66778888888888 999999999999999998766 77
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048578 438 NYVLMSNIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
++..++.+|...|++++|.+.+++..+.
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8999999999999999999999998774
No 180
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.20 E-value=7.3e-06 Score=77.21 Aligned_cols=90 Identities=8% Similarity=-0.018 Sum_probs=79.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 048578 366 NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMS 443 (519)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (519)
+...|..+..+|.+.|++++|++.+++. .+.| +...+..+..++.. .|++++|...++++++++|.+..++..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~---~g~~~eA~~~l~~Al~l~P~~~~~~~~l~ 348 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQG---LKEYDQALADLKKAQEIAPEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4568888999999999999999999988 6666 56688888888999 99999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHH
Q 048578 444 NIYAAKAQWDDAGKM 458 (519)
Q Consensus 444 ~~~~~~g~~~~A~~~ 458 (519)
.++...++.+++.+.
T Consensus 349 ~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 349 KVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888877653
No 181
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.20 E-value=2.7e-06 Score=79.26 Aligned_cols=148 Identities=14% Similarity=-0.026 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHH
Q 048578 297 CTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDL 376 (519)
Q Consensus 297 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (519)
..+..+...+.+.|++++|...|++.... .|+... +...|+.+++...+ . ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHHH
Confidence 34555666666777777777777776653 344331 22333333333221 1 1367788888
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH-HhcCCch
Q 048578 377 LCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIY-AAKAQWD 453 (519)
Q Consensus 377 ~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 453 (519)
|.+.|++++|+..+++. .+.| +...|..+..++.. .|++++|...|+++++++|.++.++..+..+. ...+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~---~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAE---LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT---TTCHHHHHHHHHHTTC------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998887 4455 56688888888888 89999999999999999999888888888874 4556777
Q ss_pred HHHHHHHHHHhCCC
Q 048578 454 DAGKMRRLMKERNI 467 (519)
Q Consensus 454 ~A~~~~~~m~~~~~ 467 (519)
++..+|++|.....
T Consensus 317 ~a~~~~~~~l~~~p 330 (338)
T 2if4_A 317 KQKEMYKGIFKGKD 330 (338)
T ss_dssp --------------
T ss_pred HHHHHHHHhhCCCC
Confidence 88888888865443
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.19 E-value=4.4e-06 Score=68.04 Aligned_cols=129 Identities=13% Similarity=-0.065 Sum_probs=79.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HH
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPN----VKHYGCLVDLLCRARLLDEAYEVIRNM----PMEPN----AV 400 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~p~----~~ 400 (519)
++..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|.+.+++. ...++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4444555555555666665555555431100011 135556666666677777776666654 10111 23
Q ss_pred HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC------CCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 401 LWGSLLTACASADDGANVELAEIAMERLIKLEPF------NDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 401 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
.+..+...+.. .|++++|...++++++..+. ...++..++.+|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTL---LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55556666777 78888888888887765321 245677889999999999999999888764
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.18 E-value=3.8e-06 Score=68.86 Aligned_cols=77 Identities=17% Similarity=0.054 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCC-chHHHHH
Q 048578 367 VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFND-GNYVLMS 443 (519)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~ 443 (519)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++.. .|++++|...++++++++|.++ .+...+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~---~g~~~~A~~~~~~al~l~p~~~~~~~~~l~ 139 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIA---AWKLDEAEEDLKLLLRNHPAAASVVAREMK 139 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH---HhcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 457777888888888888888888877 4455 45677778888888 8889999999999999888876 4444444
Q ss_pred HHH
Q 048578 444 NIY 446 (519)
Q Consensus 444 ~~~ 446 (519)
.+.
T Consensus 140 ~~~ 142 (162)
T 3rkv_A 140 IVT 142 (162)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.18 E-value=4.6e-06 Score=68.36 Aligned_cols=65 Identities=15% Similarity=0.145 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 399 AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 399 ~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
...|..+..++.. .|++++|...++++++++|.++.+|..++.+|...|++++|...|++..+..
T Consensus 63 ~~~~~nla~~~~~---~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 63 IPLYANMSQCYLN---IGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh---cCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 3577778888888 9999999999999999999999999999999999999999999999987753
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.17 E-value=1.6e-06 Score=66.68 Aligned_cols=82 Identities=11% Similarity=0.040 Sum_probs=43.6
Q ss_pred cCChHHHHHHHHhC-CC---CCC-HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchH
Q 048578 380 ARLLDEAYEVIRNM-PM---EPN-AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDD 454 (519)
Q Consensus 380 ~~~~~~A~~~~~~~-~~---~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 454 (519)
.|++++|+..|++. .. .|+ ...+..+...+.. .|++++|...++++++.+|+++.++..++.+|.+.|++++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT---LGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHH
Confidence 34555555555554 33 132 2344445555555 5666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHh
Q 048578 455 AGKMRRLMKE 464 (519)
Q Consensus 455 A~~~~~~m~~ 464 (519)
|...+++..+
T Consensus 80 A~~~~~~al~ 89 (117)
T 3k9i_A 80 GVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655544
No 186
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.16 E-value=7.5e-05 Score=74.41 Aligned_cols=171 Identities=10% Similarity=-0.027 Sum_probs=130.2
Q ss_pred HHHHHHHHhhcCCC---ChhhHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--
Q 048578 281 IEEALRVFKIVLEK---NVCTWNSIIGGLAIHGC----------GEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAG-- 345 (519)
Q Consensus 281 ~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~----------~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-- 345 (519)
.++|++.++++..- +..+|+.--..+...|+ ++++++.++++.+.. +-+..+|..-..++.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 45667777776542 34556665555656666 889999999988754 445668887777888888
Q ss_pred cHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHcccc---------
Q 048578 346 LIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRAR-LLDEAYEVIRNM-PMEP-NAVLWGSLLTACASAD--------- 413 (519)
Q Consensus 346 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~--------- 413 (519)
+++++.+.++++.+. -+.+...|+....++.+.| .++++++.++++ ...| |...|+.....+....
T Consensus 124 ~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 779999999999883 4567788888888888888 899999999888 6666 5556666655544310
Q ss_pred --CCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchH
Q 048578 414 --DGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDD 454 (519)
Q Consensus 414 --~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 454 (519)
..+.++++.+.+++++..+|.+..+|..+..++.+.|+.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 01568999999999999999999999999999999988655
No 187
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.16 E-value=1.7e-05 Score=77.53 Aligned_cols=117 Identities=9% Similarity=-0.007 Sum_probs=71.1
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 048578 272 TDMYAKCGYIEEALRVFKIVLE---KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIE 348 (519)
Q Consensus 272 ~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 348 (519)
...+.+.|++++|++.|++..+ .+..+|..+..++.+.|++++|+..+++..+.. +.+...+..+..+|...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 3345666777777777776643 245667777777777777777777777776642 234556677777777777777
Q ss_pred HHHHHHHHcHHhcCCCCChhHHHHHHHH--HHhcCChHHHHHHHH
Q 048578 349 KGKEIFYNMRRDYKVEPNVKHYGCLVDL--LCRARLLDEAYEVIR 391 (519)
Q Consensus 349 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~ 391 (519)
+|.+.|++..+. .+.+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777777663 12233344444444 666677777777766
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.09 E-value=2.4e-06 Score=65.70 Aligned_cols=92 Identities=12% Similarity=-0.035 Sum_probs=52.3
Q ss_pred cCcHHHHHHHHHHcHHhcC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHH
Q 048578 344 AGLIEKGKEIFYNMRRDYK--VEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVE 419 (519)
Q Consensus 344 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~ 419 (519)
.|++++|+..|++..+. + .+.+...+..+..+|...|++++|++.|++. ...| +...+..+..++.. .|+++
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---~g~~~ 78 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN---LGRYE 78 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HTCHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH---cCCHH
Confidence 45556666666666541 1 1223455666666666666666666666665 3334 34455556666666 66777
Q ss_pred HHHHHHHHHHhhCCCCCchH
Q 048578 420 LAEIAMERLIKLEPFNDGNY 439 (519)
Q Consensus 420 ~a~~~~~~~~~~~p~~~~~~ 439 (519)
+|...++++++..|.++...
T Consensus 79 ~A~~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 79 QGVELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHH
Confidence 77777777777766655443
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.05 E-value=1.1e-05 Score=75.08 Aligned_cols=153 Identities=10% Similarity=0.016 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 048578 265 DKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHA 344 (519)
Q Consensus 265 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 344 (519)
...+..+...+.+.|++++|...|++....+.... .+...|+..++...+ . ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l---~-------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAV---K-------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHH---H-------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHH---H-------HHHHHHHHHHHHHc
Confidence 45577788889999999999999998754322211 112223333333222 1 13778888899999
Q ss_pred CcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHccccCCCCHHHHH
Q 048578 345 GLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAV-LWGSLLTACASADDGANVELAE 422 (519)
Q Consensus 345 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~~~~a~ 422 (519)
|++++|+..+++..+. .+.+...|..+..+|...|++++|...|++. .+.|+.. .+..+...... ..+..+.+.
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~--~~~~~~~a~ 319 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ--EKALYQKQK 319 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--HHHHHHHHH
Confidence 9999999999999873 3456788999999999999999999999998 6777554 33333333222 156778888
Q ss_pred HHHHHHHhhCCCCC
Q 048578 423 IAMERLIKLEPFND 436 (519)
Q Consensus 423 ~~~~~~~~~~p~~~ 436 (519)
..++++++..|.++
T Consensus 320 ~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 320 EMYKGIFKGKDEGG 333 (338)
T ss_dssp --------------
T ss_pred HHHHHhhCCCCCCC
Confidence 99999998888754
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.01 E-value=3.9e-05 Score=74.60 Aligned_cols=125 Identities=10% Similarity=0.018 Sum_probs=95.8
Q ss_pred HHhccCcHHHHHHHHHHcHHhcC--CC---C-ChhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCH-HHHH
Q 048578 340 ACSHAGLIEKGKEIFYNMRRDYK--VE---P-NVKHYGCLVDLLCRARLLDEAYEVIRNM---------PMEPNA-VLWG 403 (519)
Q Consensus 340 ~~~~~g~~~~a~~~~~~~~~~~~--~~---~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~---------~~~p~~-~~~~ 403 (519)
.+...|++++|+.++++..+... +. | ...+++.|+.+|...|++++|..++++. +..|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35577888888888877765221 11 2 2467888999999999999998888775 233443 4788
Q ss_pred HHHHHHccccCCCCHHHHHHHHHHHHh-----hCCCCCc---hHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 404 SLLTACASADDGANVELAEIAMERLIK-----LEPFNDG---NYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 404 ~ll~~~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
.|...|.. .|++++|..+++++++ ++|+.|. +...+..++...|++++|+.+++++++.-.
T Consensus 398 nLa~~~~~---~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 398 RAGLTNWH---AGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888999 9999999999999875 5677554 445788888899999999999999987543
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.01 E-value=1.6e-05 Score=63.47 Aligned_cols=107 Identities=14% Similarity=0.050 Sum_probs=74.4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHcHHhcCCCC-----C-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CC-------
Q 048578 334 LIAVLTACSHAGLIEKGKEIFYNMRRDYKVEP-----N-----VKHYGCLVDLLCRARLLDEAYEVIRNM-PM------- 395 (519)
Q Consensus 334 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~------- 395 (519)
+......+.+.|++++|+..|++..+-..-.| + ...|..+..++.+.|++++|+..+++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 34444455566666666666666655211100 1 237778888888888888888877766 44
Q ss_pred CCCHH-HH----HHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 048578 396 EPNAV-LW----GSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMS 443 (519)
Q Consensus 396 ~p~~~-~~----~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (519)
.|+.. .| .....++.. .|++++|+..|++++++.|.+...+..+.
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~---lgr~eEAl~~y~kAlel~p~d~~~~~~~~ 143 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDG---LGRGAEAMPEFKKVVEMIEERKGETPGKE 143 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred CCchHHHHHHHHHhHHHHHHH---CCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 88654 67 778888888 99999999999999999998876655443
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.99 E-value=2.3e-05 Score=63.63 Aligned_cols=97 Identities=12% Similarity=-0.025 Sum_probs=49.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHH
Q 048578 333 TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEP----NVKHYGCLVDLLCRARLLDEAYEVIRNM-------PMEP-NAV 400 (519)
Q Consensus 333 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~p-~~~ 400 (519)
++..+...+...|++++|...+++..+...-.+ ....+..+...+...|++++|.+.+++. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 444455555555555555555555443110001 1234455555666666666666655544 1011 122
Q ss_pred HHHHHHHHHccccCCCCHHHHHHHHHHHHhhC
Q 048578 401 LWGSLLTACASADDGANVELAEIAMERLIKLE 432 (519)
Q Consensus 401 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~ 432 (519)
.+..+...+.. .|++++|.+.++++++..
T Consensus 131 ~~~~la~~~~~---~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 131 ACWSLGNAYTA---LGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHH---HTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---ccCHHHHHHHHHHHHHHH
Confidence 44455555666 667777777776666543
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.96 E-value=3.5e-06 Score=63.83 Aligned_cols=93 Identities=11% Similarity=-0.041 Sum_probs=74.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC------Cc
Q 048578 366 NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN------DG 437 (519)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~ 437 (519)
+...+..+...+...|++++|.+.|++. ...| +...+..+..++.. .|++++|...++++++.+|.+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK---LGEYTQAIQMCQQGLRYTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHTSCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 4566777888888888888888888887 4444 56677778888888 899999999999999999987 67
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHH
Q 048578 438 NYVLMSNIYAAKAQWDDAGKMRRL 461 (519)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~ 461 (519)
++..++.++...|++++|.+.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHH
Confidence 778888888888888777665544
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.88 E-value=3.6e-05 Score=58.67 Aligned_cols=78 Identities=12% Similarity=0.076 Sum_probs=61.4
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 048578 385 EAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLM 462 (519)
Q Consensus 385 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (519)
+|++.|++. ...| +...+..+...+.. .|++++|...++++++.+|.++..|..++.+|...|++++|...+++.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAE---HEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455566655 4455 45677777777888 888888888888888888888888888888888889999998888887
Q ss_pred HhC
Q 048578 463 KER 465 (519)
Q Consensus 463 ~~~ 465 (519)
.+.
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 664
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.88 E-value=6.3e-05 Score=55.65 Aligned_cols=65 Identities=20% Similarity=0.155 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048578 398 NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 398 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
+...+..+...+.. .|++++|...++++++.+|.++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLK---HDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45677788888888 899999999999999999999999999999999999999999999988764
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.85 E-value=7.8e-05 Score=53.72 Aligned_cols=81 Identities=20% Similarity=0.217 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 048578 367 VKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSN 444 (519)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (519)
...+..+...+...|++++|...+++. ...| +...+..+...+.. .|++++|...++++++.+|.++..+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK---QGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---HhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 456667777788888888888888776 3334 45667777777888 888888988888888888888888888888
Q ss_pred HHHhcC
Q 048578 445 IYAAKA 450 (519)
Q Consensus 445 ~~~~~g 450 (519)
++.+.|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 877654
No 197
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.84 E-value=4.6e-05 Score=74.11 Aligned_cols=118 Identities=10% Similarity=-0.042 Sum_probs=95.1
Q ss_pred CcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----------------HHHHHHHHH
Q 048578 345 GLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPN----------------AVLWGSLLT 407 (519)
Q Consensus 345 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~----------------~~~~~~ll~ 407 (519)
+++++|...|+...+. .+-....|..+...|.+.|++++|+..|++. .+.|+ ...|..+..
T Consensus 248 ~~~~~A~~~~~~~~~~--~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKE--KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEECCCCGGGSCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHH--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3444555555444331 1123557888899999999999999999988 33343 478888888
Q ss_pred HHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 408 ACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 408 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
++.. .|++++|...++++++++|.++.+|..++.+|...|++++|...|++..+...
T Consensus 326 ~~~~---~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 326 CYLK---LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp HHHH---TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHH---hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 8999 99999999999999999999999999999999999999999999999987654
No 198
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.81 E-value=0.00014 Score=68.33 Aligned_cols=89 Identities=6% Similarity=-0.112 Sum_probs=52.3
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHH
Q 048578 296 VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVD 375 (519)
Q Consensus 296 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 375 (519)
..+|..+..++.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..+. .+.+...+..+..
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~ 349 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3455666666666666666666666666532 223456666666666666666666666666652 2234455555555
Q ss_pred HHHhcCChHHHH
Q 048578 376 LLCRARLLDEAY 387 (519)
Q Consensus 376 ~~~~~~~~~~A~ 387 (519)
++...++.+++.
T Consensus 350 ~~~~~~~~~~a~ 361 (370)
T 1ihg_A 350 VKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
No 199
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.72 E-value=0.00019 Score=51.97 Aligned_cols=72 Identities=18% Similarity=0.190 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 048578 397 PNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 397 p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (519)
++...+..+..++...++....++|..+++++++.+|+++.+...++..+.+.|++++|...++++.+....
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 466677777777655222334799999999999999999999999999999999999999999999886654
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.70 E-value=1.4e-05 Score=63.68 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC-----------CchHHHHHHHHHHhCCC
Q 048578 418 VELAEIAMERLIKLEPFNDGNYVLMSNIYAAKA-----------QWDDAGKMRRLMKERNI 467 (519)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~m~~~~~ 467 (519)
+++|+..|+++++++|++..+|..++.+|...| ++++|.+.|++..+.+.
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 679999999999999999999999999998774 89999999998887544
No 201
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.64 E-value=0.00061 Score=67.84 Aligned_cols=151 Identities=12% Similarity=0.002 Sum_probs=121.8
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCc----------HHHHHHHHHHcHHhcCCCCChhHHHHHHHHHH
Q 048578 310 GCGEEAVKMFWQMQMSGIKPD-DVTLIAVLTACSHAGL----------IEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLC 378 (519)
Q Consensus 310 g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (519)
...++|++.++++... .|+ ...|+.--.++...|+ ++++.+.++.+.+ ..+.+..+|+.-.-++.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 3446789999999874 454 4467666666666666 9999999999998 34567788998888889
Q ss_pred hcC--ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCC-CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc----
Q 048578 379 RAR--LLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGA-NVELAEIAMERLIKLEPFNDGNYVLMSNIYAAK---- 449 (519)
Q Consensus 379 ~~~--~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---- 449 (519)
+.+ +++++++.++++ ...| +...|+.-...... .| .++++.+.++++++.+|.|..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~---l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ---AAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHH---cCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence 999 779999999999 5555 66678777777777 77 899999999999999999999999999998874
Q ss_pred ----------CCchHHHHHHHHHHhCCC
Q 048578 450 ----------AQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 450 ----------g~~~~A~~~~~~m~~~~~ 467 (519)
+.+++|.+.+++......
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCC
Confidence 557888888888876443
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.0002 Score=53.72 Aligned_cols=67 Identities=12% Similarity=-0.048 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 398 NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 398 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
+...+..+...+.. .|++++|...++++++.+|.++.++..++.+|.+.|++++|.+.+++..+...
T Consensus 3 ~~~~~~~~g~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 3 QFEKQKEQGNSLFK---QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred hHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 45567777788888 99999999999999999999999999999999999999999999999987544
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.53 E-value=0.00062 Score=66.15 Aligned_cols=62 Identities=11% Similarity=-0.042 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH-----CCC-CCCH-HHHHHHHHHHhccCcHHHHHHHHHHcHH
Q 048578 298 TWNSIIGGLAIHGCGEEAVKMFWQMQM-----SGI-KPDD-VTLIAVLTACSHAGLIEKGKEIFYNMRR 359 (519)
Q Consensus 298 ~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~-~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (519)
+++.|...|...|++++|+.++++..+ .|- .|+. .+...+..++...+.+++|+.+|..+.+
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555432 121 1222 2445555666677777777777777665
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.45 E-value=9.4e-05 Score=58.97 Aligned_cols=89 Identities=16% Similarity=0.099 Sum_probs=49.3
Q ss_pred cHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCC----------hHHHHHHHHhC-CCCCC-HHHHHHHHHHHcccc
Q 048578 346 LIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARL----------LDEAYEVIRNM-PMEPN-AVLWGSLLTACASAD 413 (519)
Q Consensus 346 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~ 413 (519)
.+++|.+.++...+. -+.+...|..+..++...++ +++|+..|++. .+.|+ ...|..+..+|...+
T Consensus 17 ~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 344444444444441 22234444444444444433 23555555555 44453 345555555555410
Q ss_pred C--------CCCHHHHHHHHHHHHhhCCCCC
Q 048578 414 D--------GANVELAEIAMERLIKLEPFND 436 (519)
Q Consensus 414 ~--------~~~~~~a~~~~~~~~~~~p~~~ 436 (519)
. .|++++|.+.|+++++++|++.
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 0 2589999999999999999864
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.41 E-value=0.00047 Score=49.44 Aligned_cols=65 Identities=20% Similarity=0.255 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 399 AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 399 ~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
...+..+...+.. .|++++|...++++++..|.++..+..++.+|.+.|++++|.+.+++..+..
T Consensus 9 ~~~~~~la~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 9 AEAWYNLGNAYYK---QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH---ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4466777777888 9999999999999999999999999999999999999999999999987753
No 206
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.40 E-value=0.076 Score=52.91 Aligned_cols=308 Identities=8% Similarity=-0.037 Sum_probs=150.4
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 048578 107 AEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLL 186 (519)
Q Consensus 107 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 186 (519)
.+.|++..+..+...+...-+.|- ..|..+...+. .....++..++.+..+.+.....-...+..+.+.+++.....+
T Consensus 17 ~~~~~~~~~~~l~~~l~~~pL~~y-l~y~~l~~~l~-~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~ 94 (618)
T 1qsa_A 17 WDNRQMDVVEQMMPGLKDYPLYPY-LEYRQITDDLM-NQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAF 94 (618)
T ss_dssp HHTTCHHHHHHHSGGGTTSTTHHH-HHHHHHHHTGG-GCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHhhcCCCcHHH-HHHHHHHhCcc-cCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHh
Confidence 345666666666555533222111 13433333321 1135567777776664555555566677778888889888887
Q ss_pred HhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHH--HHHHHHHHHcC----
Q 048578 187 FDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELG--KWVHEFVNKNC---- 260 (519)
Q Consensus 187 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a--~~~~~~~~~~~---- 260 (519)
+.. ...+...-.....+....|+..+|......+-..| ...+.....++..+.+.|..... ..=+..+...|
T Consensus 95 ~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~ 172 (618)
T 1qsa_A 95 SPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGL 172 (618)
T ss_dssp CCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHH
T ss_pred ccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 766 33344445556777788888877877777665554 22334455566655554433221 11111111111
Q ss_pred -------CCcch-hHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh---hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 048578 261 -------IILND-KLGAALTDMYAKCGYIEEALRVFKIVLEKNVC---TWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKP 329 (519)
Q Consensus 261 -------~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 329 (519)
++++. .....++..+..-. .+....... .++.. .+...+.-+.+ .+.+.|...+....+.+ ..
T Consensus 173 a~~l~~~l~~~~~~~a~~~~al~~~p~---~~~~~~~~~-~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~ 246 (618)
T 1qsa_A 173 VTVLAGQMPADYQTIASAIISLANNPN---TVLTFARTT-GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QL 246 (618)
T ss_dssp HHHHHHTCCGGGHHHHHHHHHHHHCGG---GHHHHHHHS-CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhChH---hHHHHHhcc-CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CC
Confidence 11111 11112222111111 111111111 11111 11111222222 36677888877775433 22
Q ss_pred CHH----HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC--CHHHHH
Q 048578 330 DDV----TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEP--NAVLWG 403 (519)
Q Consensus 330 ~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p--~~~~~~ 403 (519)
+.. ....+.......+...++...+...... . .+.....-.+....+.|+++.|...|+.|+-.+ .....-
T Consensus 247 ~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~Y 323 (618)
T 1qsa_A 247 NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR-S--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRY 323 (618)
T ss_dssp CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc-C--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHH
Confidence 222 2233333444455344555555554331 2 233333344444556788888888888883222 222222
Q ss_pred HHHHHHccccCCCCHHHHHHHHHHHHh
Q 048578 404 SLLTACASADDGANVELAEIAMERLIK 430 (519)
Q Consensus 404 ~ll~~~~~~~~~~~~~~a~~~~~~~~~ 430 (519)
=+..++.. .|+.++|..+|+++.+
T Consensus 324 W~~ra~~~---~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 324 WQADLLLE---RGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHH---TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHH---cCCHHHHHHHHHHHhc
Confidence 23345556 7788888888887764
No 207
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.33 E-value=0.019 Score=43.44 Aligned_cols=141 Identities=9% Similarity=0.000 Sum_probs=108.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 048578 306 LAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDE 385 (519)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 385 (519)
+.-.|.+++..++..+... ..+..-|+.+|--....-+-+-..++++.+-+-+.+. .+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHH
Confidence 3456888888999888876 3466778888877777777778888888776643332 3566666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048578 386 AYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 386 A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
....+-.++ .+...+...+..... .|.-++-.+++..+....+.++.....++.+|.+.|+..+|.+++.+.-++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~---~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVI---QGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHH---TTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHH---hccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 666666664 244556667778888 889999999999877777778999999999999999999999999999999
Q ss_pred CCc
Q 048578 466 NIV 468 (519)
Q Consensus 466 ~~~ 468 (519)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 986
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.30 E-value=0.0044 Score=48.67 Aligned_cols=62 Identities=6% Similarity=-0.167 Sum_probs=31.2
Q ss_pred ChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHcHH
Q 048578 295 NVCTWNSIIGGLAI----HGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSH----AGLIEKGKEIFYNMRR 359 (519)
Q Consensus 295 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 359 (519)
++.++..+...|.. .+++++|..+|++..+.| +...+..|...|.. .++.++|...|++..+
T Consensus 56 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 33444444444444 455555555555555443 33444445545544 5555555555555554
No 209
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.28 E-value=0.00085 Score=50.79 Aligned_cols=65 Identities=18% Similarity=0.132 Sum_probs=32.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCC
Q 048578 366 NVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEP-NAVLWGSLLTACASADDGANVELAEIAMERLIKLEP 433 (519)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p 433 (519)
+...+..+...|...|++++|...|++. ...| +...|..+...+.. .|++++|...++++++..|
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG---QGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhcc
Confidence 3444444555555555555555555444 2223 23344444445555 5555555555555555544
No 210
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.22 E-value=0.0045 Score=48.64 Aligned_cols=110 Identities=12% Similarity=-0.031 Sum_probs=68.5
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHh----cCCHHHH
Q 048578 209 KNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAK----CGYIEEA 284 (519)
Q Consensus 209 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 284 (519)
+++++|.+.|++..+.| .|+.. +...|...+..+.|...+++..+.| ++.....|..+|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35667777777776665 23322 4455555566666777777666654 34555556666666 5677777
Q ss_pred HHHHhhcCC-CChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCC
Q 048578 285 LRVFKIVLE-KNVCTWNSIIGGLAI----HGCGEEAVKMFWQMQMSG 326 (519)
Q Consensus 285 ~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 326 (519)
..+|++..+ .++.++..|...|.. .+++++|..+|++..+.|
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777766644 355566666666666 667777777777766655
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.20 E-value=0.0091 Score=54.74 Aligned_cols=136 Identities=13% Similarity=-0.026 Sum_probs=63.9
Q ss_pred CChhhHHHHHHHHHH--cC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcc---C-----cHHHHHHHHHHcHH
Q 048578 294 KNVCTWNSIIGGLAI--HG---CGEEAVKMFWQMQMSGIKPDD-VTLIAVLTACSHA---G-----LIEKGKEIFYNMRR 359 (519)
Q Consensus 294 ~~~~~~~~l~~~~~~--~g---~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~---g-----~~~~a~~~~~~~~~ 359 (519)
.+..+|...+.+... .+ +..+|..+|++.++. .|+. ..+..+..++.-. + ........+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 355666666554332 22 346677777777763 5553 3444333333200 0 00111111111111
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 360 DYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 360 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
....+.+..+|..+...+...|++++|...++++ .+.|+...|..+...+.. .|+.++|.+.++++..++|.
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~---~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEM---KGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHSCS
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHhcCCC
Confidence 0112334455555555555556666666666555 334555455444444555 56666666666666666655
No 212
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.20 E-value=0.0012 Score=48.52 Aligned_cols=63 Identities=8% Similarity=-0.021 Sum_probs=30.9
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHH
Q 048578 296 VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRR 359 (519)
Q Consensus 296 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (519)
...+..+...+...|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3344445555555555555555555554432 11233455555555555555555555555443
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.02 E-value=0.00078 Score=64.30 Aligned_cols=82 Identities=11% Similarity=0.057 Sum_probs=51.9
Q ss_pred cCChHHHHHHHHhC---------CCCCCH-HHHHHHHHHHccccCCCCHHHHHHHHHHHHh-----hCCCC---CchHHH
Q 048578 380 ARLLDEAYEVIRNM---------PMEPNA-VLWGSLLTACASADDGANVELAEIAMERLIK-----LEPFN---DGNYVL 441 (519)
Q Consensus 380 ~~~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~-----~~p~~---~~~~~~ 441 (519)
.|++++|..++++. ...|+. .+++.+..+|.. .|++++|..+++++++ .+|++ ...++.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~---~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 387 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY---MQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK 387 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh---hcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 35556666555543 112322 366667777777 7777777777777764 33443 346677
Q ss_pred HHHHHHhcCCchHHHHHHHHHHh
Q 048578 442 MSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
|+.+|..+|++++|+.++++..+
T Consensus 388 La~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHH
Confidence 77788888888888887777654
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.01 E-value=0.0012 Score=48.23 Aligned_cols=64 Identities=14% Similarity=0.104 Sum_probs=38.4
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchH
Q 048578 373 LVDLLCRARLLDEAYEVIRNM-PMEP-NAV-LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNY 439 (519)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~-~~~p-~~~-~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 439 (519)
....+...|++++|.+.|++. ...| +.. .+..+...+.. .|++++|...++++++.+|.++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK---LGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 344556666666666666665 3334 334 55555555666 6666666666666666666665554
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.00 E-value=0.051 Score=56.90 Aligned_cols=113 Identities=16% Similarity=0.119 Sum_probs=77.4
Q ss_pred HHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 048578 174 YCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVH 253 (519)
Q Consensus 174 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 253 (519)
....|++++|.++.+.+. +...|..+...+.+.++++.|.++|.++.+ |..+...+...++.+....+.
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 456799999999887764 567899999999999999999999998753 334444555577777766666
Q ss_pred HHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 048578 254 EFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQ 321 (519)
Q Consensus 254 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 321 (519)
+.....|. ++....+|.+.|++++|+++|. +.+++++|..+-+.
T Consensus 731 ~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~------------------~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 731 KDAETTGK------FNLAFNAYWIAGDIQGAKDLLI------------------KSQRFSEAAFLGST 774 (814)
T ss_dssp HHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH------------------HTTCHHHHHHHHHH
T ss_pred HHHHHcCc------hHHHHHHHHHcCCHHHHHHHHH------------------HcCChHHHHHHHHH
Confidence 66555542 2333444666677777766544 45666666665543
No 216
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.96 E-value=4.2e-05 Score=71.40 Aligned_cols=239 Identities=12% Similarity=0.057 Sum_probs=174.4
Q ss_pred CCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHH
Q 048578 60 NRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLK 139 (519)
Q Consensus 60 ~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 139 (519)
..+.+|+.|.++.... +++.+|+..|= ...|+..|..+|.+..+.|.+++-+..+.-.++..- ++..=+.++-
T Consensus 52 n~p~VWs~LgkAqL~~---~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ 124 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQK---GMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF 124 (624)
T ss_dssp CCCCCSSSHHHHTTTS---SSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHH
T ss_pred CCccHHHHHHHHHHcc---CchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHH
Confidence 3577899999988887 88888876543 346888899999999999999999999887776533 3344467888
Q ss_pred HHcCccchHHHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC------------------------Cch
Q 048578 140 ACGDLRQVKGVHSLVVKSKDFNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTE------------------------KNV 195 (519)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------~~~ 195 (519)
+|++.++..++.+.+ ..|+..-...+.+-|...|.++.|.-+|..+.. .++
T Consensus 125 ayAk~~rL~elEefl-----~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HHHTSCSSSTTTSTT-----SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HHHhhCcHHHHHHHH-----cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 999988855544433 346666667778888888999988888877752 467
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHH
Q 048578 196 VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMY 275 (519)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (519)
.+|-.+-.+|...+.+.-|.-+--.+.-. || ....++..|...|.+++...+++.-.... .....+|+-|.-.|
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILY 273 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 273 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHH
Confidence 79999999999999998887765555432 21 12235666888899988888887776432 45677888888888
Q ss_pred HhcCCHHHHHHHHhhcCC-----------CChhhHHHHHHHHHHcCChHHHHH
Q 048578 276 AKCGYIEEALRVFKIVLE-----------KNVCTWNSIIGGLAIHGCGEEAVK 317 (519)
Q Consensus 276 ~~~g~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~ 317 (519)
++- +.++..+.++.... .....|.-++-.|.+-.+++.|..
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 775 44555555443322 145678889999998888887754
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.86 E-value=0.0038 Score=59.57 Aligned_cols=92 Identities=12% Similarity=-0.050 Sum_probs=57.4
Q ss_pred cCcHHHHHHHHHHcHHhc--CCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCH-HHHHHHHH
Q 048578 344 AGLIEKGKEIFYNMRRDY--KVEP----NVKHYGCLVDLLCRARLLDEAYEVIRNM---------PMEPNA-VLWGSLLT 407 (519)
Q Consensus 344 ~g~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~---------~~~p~~-~~~~~ll~ 407 (519)
.|++++|..++++..+.. -+.| ...+++.|..+|...|++++|..++++. +..|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 456677776666655421 1111 2356677777777777777777776665 223433 36777777
Q ss_pred HHccccCCCCHHHHHHHHHHHHh-----hCCCCCch
Q 048578 408 ACASADDGANVELAEIAMERLIK-----LEPFNDGN 438 (519)
Q Consensus 408 ~~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~ 438 (519)
.|.. .|++++|..+++++++ ++|++|.+
T Consensus 391 ~~~~---qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 391 LYMG---LENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHH---TTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHh---ccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 7777 7888888888887765 45665443
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.83 E-value=0.0054 Score=48.25 Aligned_cols=86 Identities=14% Similarity=0.009 Sum_probs=52.2
Q ss_pred CcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHccccCCCC
Q 048578 345 GLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRAR---LLDEAYEVIRNM-PME-P--NAVLWGSLLTACASADDGAN 417 (519)
Q Consensus 345 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~~~~~~ 417 (519)
+....+.+.|.+..+. + +++..+...+.-++++.+ +.++++.+|++. ... | +...+..+.-++.+ .|+
T Consensus 12 ~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k---l~~ 86 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR---LKE 86 (152)
T ss_dssp HHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH---TSC
T ss_pred HHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH---ccC
Confidence 3455566666655551 2 356666666677777766 555777777666 222 4 22344444445666 777
Q ss_pred HHHHHHHHHHHHhhCCCC
Q 048578 418 VELAEIAMERLIKLEPFN 435 (519)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~ 435 (519)
+++|.+.++.+++.+|+|
T Consensus 87 Y~~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 87 YEKALKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhcCCCC
Confidence 777777777777777765
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.82 E-value=0.0062 Score=44.27 Aligned_cols=86 Identities=9% Similarity=0.001 Sum_probs=51.3
Q ss_pred HHHHHhccCcHHHHHHHHHHcHHhcCCCCChh-HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHcccc
Q 048578 337 VLTACSHAGLIEKGKEIFYNMRRDYKVEPNVK-HYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAV-LWGSLLTACASAD 413 (519)
Q Consensus 337 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~ 413 (519)
....+...|++++|...|+++.+. .+.+.. .+..+..+|...|++++|.+.|++. .+.|+.. .+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~---------- 73 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA---------- 73 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH----------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH----------
Confidence 345566777777777777777662 233455 6677777777777777777777776 3344322 221
Q ss_pred CCCCHHHHHHHHHHHHhhCCCC
Q 048578 414 DGANVELAEIAMERLIKLEPFN 435 (519)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~~p~~ 435 (519)
.+.+.++...+++....+|++
T Consensus 74 -~~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 74 -RKMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp -HHHHHHHHHHHCCTTHHHHCC
T ss_pred -HHHHHHHHHHHHHHhccCccc
Confidence 123555666666555555543
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.80 E-value=0.0026 Score=60.77 Aligned_cols=116 Identities=14% Similarity=0.121 Sum_probs=78.5
Q ss_pred HHHHHhcCChHHHHHHHHhC------CCCCC----HHHHHHHHHHHccccCCCCHHHHHHHHHHHHh-----hCCCC---
Q 048578 374 VDLLCRARLLDEAYEVIRNM------PMEPN----AVLWGSLLTACASADDGANVELAEIAMERLIK-----LEPFN--- 435 (519)
Q Consensus 374 ~~~~~~~~~~~~A~~~~~~~------~~~p~----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~-----~~p~~--- 435 (519)
+..+...|++++|.+++++. -+.|+ ..+++.+..+|.. .|++++|+.+++++++ .+|.+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~---~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~ 370 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN---LGLLEEALFYGTRTMEPYRIFFPGSHPVR 370 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHhHHHHcCCCChHH
Confidence 34455677888887777655 12222 3477778888888 8888888888888774 34443
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCCChhHHHHHHHHHHHHHH
Q 048578 436 DGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCSEEIYSMLEYVAISLR 510 (519)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (519)
...++.|+.+|..+|++++|+.++++..+--.. .-...||...++...+.+....++
T Consensus 371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 456778889999999999999988887652111 111247777777777777765554
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.75 E-value=0.0075 Score=57.60 Aligned_cols=99 Identities=11% Similarity=-0.050 Sum_probs=66.0
Q ss_pred HHHHhccCcHHHHHHHHHHcHHhc--CCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCH-HH
Q 048578 338 LTACSHAGLIEKGKEIFYNMRRDY--KVEP----NVKHYGCLVDLLCRARLLDEAYEVIRNM---------PMEPNA-VL 401 (519)
Q Consensus 338 ~~~~~~~g~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~---------~~~p~~-~~ 401 (519)
+..+.+.|++++|...+++..+.. -+.| ...+++.++.+|...|++++|+.++++. +..|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334556677788877777776521 1112 2456777888888888888887777665 233433 36
Q ss_pred HHHHHHHHccccCCCCHHHHHHHHHHHHh-----hCCCCCchH
Q 048578 402 WGSLLTACASADDGANVELAEIAMERLIK-----LEPFNDGNY 439 (519)
Q Consensus 402 ~~~ll~~~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~ 439 (519)
++.|...|.. .|++++|..+++++++ ++|++|.+-
T Consensus 374 l~nLa~~~~~---~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 374 VMKVGKLQLH---QGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 7777778888 8888888888888875 467665443
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.73 E-value=0.095 Score=54.81 Aligned_cols=129 Identities=9% Similarity=-0.021 Sum_probs=71.9
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChH
Q 048578 234 VSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGE 313 (519)
Q Consensus 234 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 313 (519)
..++..+.+.|.++.|..+.+... .-.......|+++.|.++.+.+ .+...|..+...+.+.|+++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHH
Confidence 445555555666665554432110 1123345667777777776655 34567788888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 048578 314 EAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRN 392 (519)
Q Consensus 314 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 392 (519)
.|++.|.++.. |..+...+...|+.+...++-+..... | -++....+|.+.|++++|++++.+
T Consensus 699 ~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 699 LAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888777642 233344444456655555444444331 1 122333445556666666666655
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.53 E-value=0.0086 Score=52.58 Aligned_cols=90 Identities=14% Similarity=0.190 Sum_probs=67.1
Q ss_pred hHHHHHHHHhC-CCCCC---HHHHHHHHHHHccccC--CCCHHHHHHHHHHHHhhCCC-CCchHHHHHHHHHhc-CCchH
Q 048578 383 LDEAYEVIRNM-PMEPN---AVLWGSLLTACASADD--GANVELAEIAMERLIKLEPF-NDGNYVLMSNIYAAK-AQWDD 454 (519)
Q Consensus 383 ~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~~~~--~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~-g~~~~ 454 (519)
...|...+++. .+.|+ ...|..+...|..... .|+.++|.++|+++++++|+ +...+..+++.++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34556666665 66676 3456666666666110 38999999999999999997 499999999999884 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 048578 455 AGKMRRLMKERNIVKNPG 472 (519)
Q Consensus 455 A~~~~~~m~~~~~~~~~~ 472 (519)
|.+++++........+|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998877764344
No 224
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.38 E-value=0.02 Score=52.44 Aligned_cols=135 Identities=13% Similarity=0.085 Sum_probs=92.4
Q ss_pred CCCHHHHHHHHHHH--hcc---CcHHHHHHHHHHcHHhcCCCCC-hhHHHHHHHHHHh---cC-C-------hHHHHHHH
Q 048578 328 KPDDVTLIAVLTAC--SHA---GLIEKGKEIFYNMRRDYKVEPN-VKHYGCLVDLLCR---AR-L-------LDEAYEVI 390 (519)
Q Consensus 328 ~p~~~~~~~l~~~~--~~~---g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~~-~-------~~~A~~~~ 390 (519)
+.+...|...+++. ... .+..+|..+|++..+. .|+ ...|..+..+|.. .+ . ...+.+..
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 44555666666653 332 3467899999999873 454 3455444444431 11 1 11223322
Q ss_pred HhC-CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 048578 391 RNM-PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVK 469 (519)
Q Consensus 391 ~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 469 (519)
..+ ....+..++..+...+.. .|++++|...+++++.++|. ...|..++.++.-.|++++|.+.+++....+..+
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~---~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALV---KGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HhcccCCcCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 333 224467788887777777 79999999999999999974 6778899999999999999999999988766543
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.32 E-value=0.027 Score=41.46 Aligned_cols=73 Identities=10% Similarity=0.001 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-----C---C-CCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCch
Q 048578 368 KHYGCLVDLLCRARLLDEAYEVIRNM-----P---M-EPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGN 438 (519)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~-----~---~-~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (519)
.-+..+...+...|++..|...|+.. + . .+....+..+..++.+ .|+++.|...++++.+..|+++.+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~---~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ---QGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH---ccCHHHHHHHHHHHHhcCCCCHHH
Confidence 33445666666677777776666654 1 1 1245577778888888 888999999999999999888666
Q ss_pred HHHHH
Q 048578 439 YVLMS 443 (519)
Q Consensus 439 ~~~l~ 443 (519)
...+.
T Consensus 83 ~~n~~ 87 (104)
T 2v5f_A 83 NGNLK 87 (104)
T ss_dssp HHHHH
T ss_pred HhhHH
Confidence 55443
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.39 Score=38.77 Aligned_cols=102 Identities=10% Similarity=0.062 Sum_probs=68.8
Q ss_pred HHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 048578 173 FYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWV 252 (519)
Q Consensus 173 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 252 (519)
...+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|....+ +..+.-.|.-.|+.+...++
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345678999998887766 4567899999999999999999999887753 23344445556777766666
Q ss_pred HHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 048578 253 HEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIV 291 (519)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 291 (519)
-+.....|. ++.....+...|+++++.++|.+.
T Consensus 83 a~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 83 QNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 555555542 333444455667777776666543
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.18 Score=40.67 Aligned_cols=128 Identities=13% Similarity=0.127 Sum_probs=82.0
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 048578 274 MYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEI 353 (519)
Q Consensus 274 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 353 (519)
...+.|+++.|.++.+.+ .+...|..+.......|+++-|++.|.+... |..+.-.|...|+.+...++
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 355678888888877765 4667888888888888888888888887653 33444455566777666655
Q ss_pred HHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHH
Q 048578 354 FYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERL 428 (519)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~ 428 (519)
-+....+ | -++.....+...|+++++.++|.+.+.-|.... .... .|-.+.|.++.+.+
T Consensus 83 a~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t---~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKA---NGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHH---TTCHHHHHHHHHHT
T ss_pred HHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHH---cCcHHHHHHHHHHh
Confidence 4444431 2 234455667778888888888888753332211 1122 55666777666554
No 228
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.12 E-value=0.038 Score=39.64 Aligned_cols=68 Identities=10% Similarity=0.002 Sum_probs=47.8
Q ss_pred CCChhHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCCC-HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC
Q 048578 364 EPNVKHYGCLVDLLCRARL---LDEAYEVIRNM-PMEPN-AVLWGSLLTACASADDGANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 364 ~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (519)
+.++..+..+..++...++ .++|..++++. ...|+ ......+...+.. .|++++|+..|+++++.+|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~---~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI---SFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCC
Confidence 4566677777777765544 67888888777 55664 4455555556777 78888888888888888877
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.86 E-value=0.057 Score=42.46 Aligned_cols=86 Identities=15% Similarity=0.066 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHcHHhcCCCC--ChhHHHHHHHHHHhcCChHHH
Q 048578 312 GEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAG---LIEKGKEIFYNMRRDYKVEP--NVKHYGCLVDLLCRARLLDEA 386 (519)
Q Consensus 312 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A 386 (519)
...+.+.|.+....| .++..+...+..++++++ +.++++.+|+.+.+. . .| ....+..+.-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHH
Confidence 345666677666666 477888778888888888 677999999998884 2 24 356677788889999999999
Q ss_pred HHHHHhC-CCCCCHH
Q 048578 387 YEVIRNM-PMEPNAV 400 (519)
Q Consensus 387 ~~~~~~~-~~~p~~~ 400 (519)
.+.++.+ .++|+..
T Consensus 91 ~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhcCCCCH
Confidence 9999988 6677544
No 230
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.63 E-value=0.51 Score=35.81 Aligned_cols=141 Identities=11% Similarity=0.055 Sum_probs=90.3
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHH
Q 048578 205 HVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEA 284 (519)
Q Consensus 205 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 284 (519)
+.-.|..++..++..+.... .+..-|+.++.-....-+-+-..+.++.+-+. .|. ..+|++...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHH
Confidence 45567778888888777654 24455666665544444544444444444332 111 223444444
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCC
Q 048578 285 LRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVE 364 (519)
Q Consensus 285 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 364 (519)
...+-.+-. +.......+..+...|+-++-.+++.++... -+|+......+..+|.+.|+..+|.+++.+..+ .|++
T Consensus 81 i~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~-kG~k 157 (172)
T 1wy6_A 81 VECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK-KGEK 157 (172)
T ss_dssp HHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH-hhhH
Confidence 444443322 4455666778888889999988888886443 478888888889999999999999999988888 3653
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.61 E-value=0.045 Score=40.23 Aligned_cols=66 Identities=15% Similarity=-0.010 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhC-------CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 398 NAVLWGSLLTACASADDGANVELAEIAMERLIKLE-------PFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 398 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
+...+..+...+.. .++++.|...++++++.. +..+.++..|+.+|.+.|++++|..++++..+..
T Consensus 4 sa~dc~~lG~~~~~---~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYT---EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH---ccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 44556677778888 999999999999998753 3346688999999999999999999999987643
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.51 E-value=0.025 Score=43.82 Aligned_cols=101 Identities=11% Similarity=0.076 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHhccCcH------HHHHHHHHHcHHhcCCCCChh-HHHHHHHH------HHhcCChHHHHHHHHhC-CC
Q 048578 330 DDVTLIAVLTACSHAGLI------EKGKEIFYNMRRDYKVEPNVK-HYGCLVDL------LCRARLLDEAYEVIRNM-PM 395 (519)
Q Consensus 330 ~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~~~~~~A~~~~~~~-~~ 395 (519)
|..+|-..+....+.|+. ++..++|++... .++|+.. .|...|.. +...++.++|.++|+.+ .+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 444666666666666666 666677776666 4555421 11111111 12335566666666555 10
Q ss_pred -CCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCC
Q 048578 396 -EPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFN 435 (519)
Q Consensus 396 -~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (519)
+--...|......-.+ .|+...|.+++.+++...|.+
T Consensus 90 hKkFAKiwi~~AqFEiR---qgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELS---QGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp CTTBHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTTCBC
T ss_pred hHHHHHHHHHHHHHHHH---cccHHHHHHHHHHHhccCCCc
Confidence 0114444444444445 566666666666666655553
No 233
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.45 E-value=0.2 Score=38.55 Aligned_cols=68 Identities=7% Similarity=-0.078 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC-CCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 397 PNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF-NDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 397 p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
|+..+--.+..++.+++...+..+++.+++.+.+.+|. .......|+-++.+.|++++|+++.+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44444333444444433344445555555555555443 233444555555555555555555555544
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.32 E-value=0.07 Score=40.29 Aligned_cols=85 Identities=16% Similarity=0.034 Sum_probs=36.8
Q ss_pred cHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHH---HHHHHHhC-CCC-C-CH-HHHHHHHHHHccccCCCCH
Q 048578 346 LIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDE---AYEVIRNM-PME-P-NA-VLWGSLLTACASADDGANV 418 (519)
Q Consensus 346 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~-~~~-p-~~-~~~~~ll~~~~~~~~~~~~ 418 (519)
.+..+.+.|.+.... +. ++..+-..+.-++.+..+..+ ++.+++.. ... | .. ...-.+.-++.+ .|++
T Consensus 16 ~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk---lg~Y 90 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR---LKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH---TTCH
T ss_pred HHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH---hhhH
Confidence 334444444443331 22 444444444445555544443 44455444 212 2 11 122223333444 5555
Q ss_pred HHHHHHHHHHHhhCCCC
Q 048578 419 ELAEIAMERLIKLEPFN 435 (519)
Q Consensus 419 ~~a~~~~~~~~~~~p~~ 435 (519)
+.|.+.++.+++..|.|
T Consensus 91 ~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 91 EKALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 55555555555555554
No 235
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.59 E-value=0.15 Score=38.70 Aligned_cols=69 Identities=7% Similarity=-0.077 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCC-CCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 396 EPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPF-NDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 396 ~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
.|+..+--.+..++.+++...+..+++.+++.+.+.+|. ....+..|+-++.+.|++++|.++.+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 355555444555555544455666777777777776663 345666777777777777777777777655
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.47 E-value=0.3 Score=37.89 Aligned_cols=97 Identities=9% Similarity=0.090 Sum_probs=59.1
Q ss_pred CChhhHHHHHHHHHHcCCh------HHHHHHHHHHHHCCCCCCHH-HHHHHHH------HHhccCcHHHHHHHHHHcHHh
Q 048578 294 KNVCTWNSIIGGLAIHGCG------EEAVKMFWQMQMSGIKPDDV-TLIAVLT------ACSHAGLIEKGKEIFYNMRRD 360 (519)
Q Consensus 294 ~~~~~~~~l~~~~~~~g~~------~~a~~~~~~m~~~g~~p~~~-~~~~l~~------~~~~~g~~~~a~~~~~~~~~~ 360 (519)
.|..+|-..+...-+.|++ ++..++|++.... ++|+.. .+...+. .+...++.++|.++|+.+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4666777777777777777 7777777776653 455431 1111110 122336777777777777663
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 048578 361 YKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM 393 (519)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 393 (519)
.+.-...|......-.+.|++..|.+++.+.
T Consensus 90 --hKkFAKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 90 --CKKFAFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp --CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2222666666666667777777777777765
No 237
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.46 E-value=0.074 Score=46.73 Aligned_cols=83 Identities=11% Similarity=0.075 Sum_probs=52.0
Q ss_pred HHHHHHHHHHcHHhcCCCCC---hhHHHHHHHHHHhc-----CChHHHHHHHHhC-CCCCC--HHHHHHHHHHHccccCC
Q 048578 347 IEKGKEIFYNMRRDYKVEPN---VKHYGCLVDLLCRA-----RLLDEAYEVIRNM-PMEPN--AVLWGSLLTACASADDG 415 (519)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~~~~ 415 (519)
...|...+++..+ +.|+ -..|..+...|... |+.++|.+.|++. .+.|+ ..++......++. ..
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~--~~ 253 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCI--PL 253 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTT--TT
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH--hc
Confidence 4455555555554 3444 34666777777773 7777777777777 55563 4455555555554 03
Q ss_pred CCHHHHHHHHHHHHhhCCC
Q 048578 416 ANVELAEIAMERLIKLEPF 434 (519)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~ 434 (519)
|+.+.+.+.+++++...|.
T Consensus 254 gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHcCCCC
Confidence 7788888888888777665
No 238
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.53 E-value=0.061 Score=50.76 Aligned_cols=179 Identities=13% Similarity=0.129 Sum_probs=103.5
Q ss_pred CCcccHHHHHHhccCchHHHHHHHHHHHh-cCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCCCCcchHHHHHHHH
Q 048578 28 TKSHHHLPLLQKCTHLVQFKQVHAQIIKA-SFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGY 106 (519)
Q Consensus 28 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~ 106 (519)
-|+..|..++.++.+.+..+.+...+... .-..++.+-+.|+-.|++. +++.+-++.+ ..||..--..+..-|
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~---~rL~elEefl---~~~N~A~iq~VGDrc 154 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKT---NRLAELEEFI---NGPNNAHIQQVGDRC 154 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTS---CSSSTTTSTT---SCCSSSCTHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhh---CcHHHHHHHH---cCCCcccHHHHHHHH
Confidence 37778889999987666665555443321 2245677788999999999 7766544322 347777777788888
Q ss_pred HhcCChhHHHHHHHHHHhCC--------------------CCCCcchHHHHHHHHcCccc---hHHH-HHHHHHhCCCCC
Q 048578 107 AEAGLGHRGIQLYTQMIGNG--------------------LDPDSFTYPILLKACGDLRQ---VKGV-HSLVVKSKDFNS 162 (519)
Q Consensus 107 ~~~g~~~~a~~~~~~m~~~g--------------------~~p~~~~~~~ll~~~~~~~~---~~~~-~~~~~~~~~~~~ 162 (519)
...|.++.|.-+|..+.... ---++.||..+-.+|...+. ++.. +..+....
T Consensus 155 f~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhad---- 230 (624)
T 3lvg_A 155 YDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD---- 230 (624)
T ss_dssp HHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS----
T ss_pred HHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHH----
Confidence 88888887776665543221 01344566666666655554 1111 11111111
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCC---CchhHHHHHHHHHHHcCChhHHHHHHHH
Q 048578 163 VIHSLTRLITFYCNFGDVKSAQLLFDQMTE---KNVVTWTAMINGHVKQKNYREGIDLFRK 220 (519)
Q Consensus 163 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ 220 (519)
-...++..|-..|.+++-+.+++.-.. .....|+.|.-.|++- ++++..+.++.
T Consensus 231 ---eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 231 ---ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLEL 287 (624)
T ss_dssp ---CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTT
T ss_pred ---HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 112234445666777766666665543 4455666666666654 35555444443
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.34 E-value=0.53 Score=35.51 Aligned_cols=90 Identities=12% Similarity=0.021 Sum_probs=55.1
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH---HHHHHHHcHHhcCCCC--ChhHHHHHHHHHHhcC
Q 048578 307 AIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEK---GKEIFYNMRRDYKVEP--NVKHYGCLVDLLCRAR 381 (519)
Q Consensus 307 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~ 381 (519)
........+.+.|.+....| .|+..+-..+..++.++.+... ++.+++.+.+. -.| .......|.-++.+.|
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhh
Confidence 33344555566666555544 3666666666667777765554 77777777662 223 3344555667777888
Q ss_pred ChHHHHHHHHhC-CCCCCH
Q 048578 382 LLDEAYEVIRNM-PMEPNA 399 (519)
Q Consensus 382 ~~~~A~~~~~~~-~~~p~~ 399 (519)
++++|.+.++.+ .+.|+.
T Consensus 89 ~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 89 EYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHHhCCCC
Confidence 888888777776 555543
No 240
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.04 E-value=4.9 Score=36.21 Aligned_cols=130 Identities=18% Similarity=0.099 Sum_probs=74.8
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHH----HHHHHhCCCCCCcchHHHHHHH
Q 048578 65 DTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQL----YTQMIGNGLDPDSFTYPILLKA 140 (519)
Q Consensus 65 ~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~ 140 (519)
+-++..-|.+. +++++|++++... ...+.+.|+...|-++ ++-+.+.++++|.....-++..
T Consensus 38 ~RTi~~Ry~~~---k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 38 TRLVAARYSKQ---GNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHHT---TCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhh---cCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 33444445555 8888888876543 3455667777655544 3555666888888777777777
Q ss_pred HcCccc--------hHHHHHHHHHhCCC-CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHc
Q 048578 141 CGDLRQ--------VKGVHSLVVKSKDF-NSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQ 208 (519)
Q Consensus 141 ~~~~~~--------~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 208 (519)
+..... +.++..+-.+.++. .-++.....+...|.+.+++.+|+..|-.-..+++..+..++.-+...
T Consensus 104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHT
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Confidence 765554 33333333443321 224556666777777777777777776422223334554444444333
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.01 E-value=1.1 Score=45.57 Aligned_cols=53 Identities=13% Similarity=-0.021 Sum_probs=49.1
Q ss_pred HHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 408 ACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 408 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
.|.. .|+++.|.++.+++...-|.+-.+|..|+.+|...|+|+.|+-.+.-+.
T Consensus 346 FLl~---K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLN---RGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHH---TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhc---cCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3556 7899999999999999999999999999999999999999999998884
No 242
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.97 E-value=4.8 Score=35.96 Aligned_cols=130 Identities=13% Similarity=0.057 Sum_probs=80.4
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHH----HHHHHHhCCCCCCcchHHHHHHH
Q 048578 65 DTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQ----LYTQMIGNGLDPDSFTYPILLKA 140 (519)
Q Consensus 65 ~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~----~~~~m~~~g~~p~~~~~~~ll~~ 140 (519)
+-++..-|.+. +++++|++++... ...+.+.|+...|-+ +++...+.+++++......++..
T Consensus 36 ~Rtl~~Ry~~~---~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 36 LRTIANRYVRS---KSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHT---TCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHh---cCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 33444445554 7888888776653 445566777765555 45566667888888887777777
Q ss_pred HcCccc--------hHHHHHHHHHhCC-CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHc
Q 048578 141 CGDLRQ--------VKGVHSLVVKSKD-FNSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQ 208 (519)
Q Consensus 141 ~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 208 (519)
+..... +.++..+-.+.++ ..-++..+..+...|.+.|++.+|+..|-.-...|...+..++.-+...
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 665432 4444444444443 1235677778888888888888888877633222455555555444443
No 243
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.26 E-value=6 Score=35.34 Aligned_cols=170 Identities=17% Similarity=0.107 Sum_probs=103.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHH----HHHHHHhCCCCCCHHHHHHHHHH
Q 048578 164 IHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGID----LFRKMRDSGVEVNELTLVSVLSA 239 (519)
Q Consensus 164 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~~~~~~~~~~~~ll~~ 239 (519)
...|.++..-|.+.+++++|.+++.. -...+.+.|+...|-+ +++-..+.+++++......++..
T Consensus 33 hQ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 33 HQTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 44566777778888888888876543 2334566777666555 45556667888888888888877
Q ss_pred HhccCChH-HHHHHHHHHH----HcC--CCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHc---
Q 048578 240 CANLGASE-LGKWVHEFVN----KNC--IILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIH--- 309 (519)
Q Consensus 240 ~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~--- 309 (519)
+.....-+ .-.++.+.+. +.| ..-++.....+...|.+.|++.+|+..|-.....+...+..++.-+...
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~ 181 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDD 181 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCC
Confidence 75533211 1233334443 332 2246778888999999999999999887633323455555555444443
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHH
Q 048578 310 GCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRR 359 (519)
Q Consensus 310 g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (519)
|...++--++- ..++ -|...|+...|..+|+...+
T Consensus 182 ~~~~e~dlf~~--------------RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 182 IEDSTVAEFFS--------------RLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CCHHHHHHHHH--------------HHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred CCcchHHHHHH--------------HHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 33333221111 1122 34566888888888887765
No 244
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.12 E-value=13 Score=38.83 Aligned_cols=39 Identities=8% Similarity=0.057 Sum_probs=29.7
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048578 83 YAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIG 124 (519)
Q Consensus 83 ~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 124 (519)
-+.++|.++. ..-|-.++.++.+.++.+.+.++|.++..
T Consensus 220 ~l~~Iy~k~~---~~dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 220 KSFDFLMNMP---NCDYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHHSS---SCCHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhCC---chhHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3556666653 23577788888899999999999999875
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.12 E-value=0.32 Score=45.63 Aligned_cols=69 Identities=16% Similarity=0.121 Sum_probs=57.7
Q ss_pred HHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH-----hCCCccCCcc
Q 048578 402 WGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMK-----ERNIVKNPGC 473 (519)
Q Consensus 402 ~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~~ 473 (519)
...++..+.. .|+++++...++.+...+|-+...+..++.+|.+.|+..+|++.|++.. +.|+.|.+.+
T Consensus 174 ~~~~~~~~l~---~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIA---CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHH---TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHH---CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3445566777 8899999999999999999999999999999999999999999998875 4588776554
No 246
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=91.44 E-value=2.7 Score=29.71 Aligned_cols=88 Identities=15% Similarity=0.080 Sum_probs=63.8
Q ss_pred CChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 048578 244 GASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQ 323 (519)
Q Consensus 244 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 323 (519)
...++|..|-+.+...+. ...+--+-+..+...|+|++|..+.+...-||...|.++-. .+.|..+++...+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356677777777766653 22222233556788999999999999999899999987765 57888899998888888
Q ss_pred HCCCCCCHHHHHH
Q 048578 324 MSGIKPDDVTLIA 336 (519)
Q Consensus 324 ~~g~~p~~~~~~~ 336 (519)
.+| .|....|..
T Consensus 96 ~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 96 GSS-DPALADFAA 107 (115)
T ss_dssp TCS-SHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 776 665555543
No 247
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=91.21 E-value=2.9 Score=29.62 Aligned_cols=88 Identities=13% Similarity=0.103 Sum_probs=63.5
Q ss_pred CChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 048578 244 GASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQ 323 (519)
Q Consensus 244 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 323 (519)
...++|..|-+.+...+. ...+--+-+..+...|+|++|..+.+...-||...|.++-. .+.|..+++...+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356677777777766653 22222233556778899999999999999999999987766 57788888888888888
Q ss_pred HCCCCCCHHHHHH
Q 048578 324 MSGIKPDDVTLIA 336 (519)
Q Consensus 324 ~~g~~p~~~~~~~ 336 (519)
.+| .|....|..
T Consensus 97 ~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 97 RSQ-DPRIQTFVN 108 (116)
T ss_dssp TCC-CHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 776 665555543
No 248
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.19 E-value=1 Score=32.04 Aligned_cols=63 Identities=14% Similarity=0.110 Sum_probs=51.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHH
Q 048578 311 CGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVD 375 (519)
Q Consensus 311 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 375 (519)
+.-+..+-++.+....+.|+.....+.+++|.+.+++..|.++|+.++.+.+.. ..+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 455677778888888899999999999999999999999999999998865443 456766664
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.80 E-value=9.8 Score=41.34 Aligned_cols=163 Identities=9% Similarity=0.026 Sum_probs=91.6
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH
Q 048578 169 RLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASEL 248 (519)
Q Consensus 169 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 248 (519)
.++..+...+..+.+..+...... +...--.+..+|...|++++|.++|++.-. |+..+.... .....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------~~~~~ 884 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------AVLRE 884 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------SSHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------hhhcc
Confidence 345556666777666665555443 333334556677778888888887766421 221111000 00000
Q ss_pred HHHHHHHHHHcC--CCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC----CCCh----hhHHHHHHHHHHcCChHHHHHH
Q 048578 249 GKWVHEFVNKNC--IILNDKLGAALTDMYAKCGYIEEALRVFKIVL----EKNV----CTWNSIIGGLAIHGCGEEAVKM 318 (519)
Q Consensus 249 a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~----~~~~~l~~~~~~~g~~~~a~~~ 318 (519)
+..+.... ...-...|..++..+.+.|.++.+.++-.... ..+. ..|..++.++...|++++|...
T Consensus 885 ----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~a 960 (1139)
T 4fhn_B 885 ----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVA 960 (1139)
T ss_dssp ----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHH
T ss_pred ----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 00011110 01123456667777777777777776654432 2222 2578888999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 048578 319 FWQMQMSGIKPDDVTLIAVLTACSHAGLIEK 349 (519)
Q Consensus 319 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 349 (519)
+-.+..... -...+..|+...|..|..+.
T Consensus 961 L~~~pd~~~--r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 961 LMVLSTTPL--KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHSSS--CHHHHHHHHHHHHHHCCHHH
T ss_pred HHhCCCHHH--HHHHHHHHHHHHHhCCChhh
Confidence 888776433 34567777777776665443
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.40 E-value=9.4 Score=36.33 Aligned_cols=185 Identities=11% Similarity=0.098 Sum_probs=119.0
Q ss_pred cCChhHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHH----HHHhc
Q 048578 208 QKNYREGIDLFRKMRDS-----GVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTD----MYAKC 278 (519)
Q Consensus 208 ~~~~~~a~~~~~~m~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~ 278 (519)
.|+++.|++.+-.+.+. ...........++..|...++++.....+..+.+..-... .....++. .....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk-~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK-LSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH-HHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHhcC
Confidence 37788998887666542 3445567788899999999999999887776655322221 12223333 22223
Q ss_pred CC--HHHHHHHHhhcCC--CC--------hhhHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHH
Q 048578 279 GY--IEEALRVFKIVLE--KN--------VCTWNSIIGGLAIHGCGEEAVKMFWQMQMS--GIKPD---DVTLIAVLTAC 341 (519)
Q Consensus 279 g~--~~~a~~~~~~~~~--~~--------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--g~~p~---~~~~~~l~~~~ 341 (519)
.. .+.-..+.+.... .+ ......|...+...|++.+|..++.++... |.... ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 32 2223333333322 11 123456788899999999999999998632 32222 13677778889
Q ss_pred hccCcHHHHHHHHHHcHHh-cCC--CCC--hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 048578 342 SHAGLIEKGKEIFYNMRRD-YKV--EPN--VKHYGCLVDLLCRARLLDEAYEVIRNM 393 (519)
Q Consensus 342 ~~~g~~~~a~~~~~~~~~~-~~~--~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~ 393 (519)
...+++.+|..++.++... ... +|+ ...+...+..+...+++.+|...|.+.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999999999987531 112 222 245667788888899999998887664
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.12 E-value=2.4 Score=33.64 Aligned_cols=111 Identities=8% Similarity=-0.026 Sum_probs=57.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC-----CCh-------hhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHH-HHH
Q 048578 270 ALTDMYAKCGYIEEALRVFKIVLE-----KNV-------CTWNSIIGGLAIHGCGEEAVKMFWQMQMSG-IKPDDV-TLI 335 (519)
Q Consensus 270 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~-~~~ 335 (519)
.-+..+...|.++.|+-+.+.+.. ++. .++..+..++...|++..|...|++..... .-+... +..
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 345666677777777776665421 221 144555666777777777777777753211 111111 110
Q ss_pred HHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 048578 336 AVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMP 394 (519)
Q Consensus 336 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 394 (519)
.+. . ... -........+.+.-..+..+|.+.+++++|+.+++.++
T Consensus 105 ~~~-~---~ss----------~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 105 STG-N---SAS----------TPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp --------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred ccc-c---cCC----------CcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 000 0 000 00001122344444557788888899999998888873
No 252
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.75 E-value=13 Score=33.45 Aligned_cols=170 Identities=12% Similarity=0.061 Sum_probs=101.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHH----HHHHHhCCCCCCHHHHHHHHHH
Q 048578 164 IHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDL----FRKMRDSGVEVNELTLVSVLSA 239 (519)
Q Consensus 164 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~~~~~~~~~ll~~ 239 (519)
-..|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ ++-..+.++++|......++..
T Consensus 35 HQ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 35 AQETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34566777778888888888887543 23345666776555444 3555666788888888888877
Q ss_pred HhccCChH-HHHHHHHHHHH----cC--CCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCh
Q 048578 240 CANLGASE-LGKWVHEFVNK----NC--IILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCG 312 (519)
Q Consensus 240 ~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 312 (519)
+.....-+ .-..+.+.+.+ .| ..-++.....+...|.+.+++.+|+..|-.-..+.+..+..++.-+...+..
T Consensus 104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~ 183 (336)
T 3lpz_A 104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDES 183 (336)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCG
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCC
Confidence 76555322 12333333332 23 3346777888899999999999999888532222335665555544444332
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHH
Q 048578 313 EEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRR 359 (519)
Q Consensus 313 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 359 (519)
.++- ...-..++ -|...++...|...++...+
T Consensus 184 ~e~d--------------lfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 184 HTAP--------------LYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GGHH--------------HHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred ccHH--------------HHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 2221 11222222 35556788888777666554
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.61 E-value=1.4 Score=34.91 Aligned_cols=124 Identities=15% Similarity=0.050 Sum_probs=66.9
Q ss_pred CCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHhC--
Q 048578 325 SGIKPDDV--TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNV-------KHYGCLVDLLCRARLLDEAYEVIRNM-- 393 (519)
Q Consensus 325 ~g~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~-- 393 (519)
.|+.|... ++..-++.+...|.++.|+-+.+.+..-.+.+|+. .++..+.+++...|++.+|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34555443 44455667778888888888777765532333432 24556778888888888888888775
Q ss_pred --CCCCCHH-HHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 394 --PMEPNAV-LWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 394 --~~~p~~~-~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
..-+... +...+ . . ....... .. .+.+.+.-..++.+|.+.|++++|+.+++.+.
T Consensus 92 ~~k~l~k~~s~~~~~-~---~---~ss~p~s-------~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 92 QKKALSKTSKVRPST-G---N---SASTPQS-------QC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHCC----------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHhcCCCccccc-c---c---cCCCccc-------cc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 1111111 11001 0 0 0000000 00 12234567789999999999999999987653
No 254
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.52 E-value=2.4 Score=43.12 Aligned_cols=53 Identities=15% Similarity=-0.046 Sum_probs=40.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHcH
Q 048578 304 GGLAIHGCGEEAVKMFWQMQMSGIKPDD-VTLIAVLTACSHAGLIEKGKEIFYNMR 358 (519)
Q Consensus 304 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~ 358 (519)
..+...|+++-|+++-++... ..|+. .+|..|..+|...|+++.|+-.+..+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 345567888888888888776 35654 488888888888888888888877763
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.79 E-value=1.6 Score=40.77 Aligned_cols=64 Identities=13% Similarity=0.059 Sum_probs=37.7
Q ss_pred HHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCCHHH
Q 048578 336 AVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM--------PMEPNAVL 401 (519)
Q Consensus 336 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--------~~~p~~~~ 401 (519)
.++.++...|+++++...+..+... .+-+...|..+|.+|.+.|+..+|++.|+.. |+.|...+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3445555666666666666666552 2334556666666666666666666666544 55565543
No 256
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.52 E-value=2.4 Score=32.03 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=56.7
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 048578 311 CGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVI 390 (519)
Q Consensus 311 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 390 (519)
|.-+..+-++.+....+.|+.......+++|.+.+|+..|..+|+-++.+.+ +...+|..+++ +-..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq---------ElkPtl 136 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ---------ELRPTL 136 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH---------HHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH---------HHhhHH
Confidence 4456777777887888999999999999999999999999999999988544 34556776664 444555
Q ss_pred HhCCC
Q 048578 391 RNMPM 395 (519)
Q Consensus 391 ~~~~~ 395 (519)
+++|+
T Consensus 137 ~ELGI 141 (152)
T 2y69_E 137 NELGI 141 (152)
T ss_dssp HHHTC
T ss_pred HHhCC
Confidence 55543
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.44 E-value=4.1 Score=44.28 Aligned_cols=124 Identities=6% Similarity=-0.128 Sum_probs=86.8
Q ss_pred HHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCC----------------
Q 048578 336 AVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM--PMEP---------------- 397 (519)
Q Consensus 336 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~p---------------- 397 (519)
.++..+...+..+.+.++..... .+...--.+..+|...|++++|.+.|++. ++..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 45556666677766666544332 23333346778888999999999999887 2211
Q ss_pred -------CHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCc-----hHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048578 398 -------NAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDG-----NYVLMSNIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 398 -------~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
-..-|..++..+.. .+.++.+.++.+.+++..+.+.. .|..+...+...|++++|...+-.+.+.
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~---~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFE---ESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHH---TSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred cccccccHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 11235667777888 88999999999988876643222 6778889999999999999988777655
Q ss_pred CCc
Q 048578 466 NIV 468 (519)
Q Consensus 466 ~~~ 468 (519)
..+
T Consensus 968 ~~r 970 (1139)
T 4fhn_B 968 PLK 970 (1139)
T ss_dssp SSC
T ss_pred HHH
Confidence 443
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.37 E-value=8.7 Score=33.25 Aligned_cols=123 Identities=14% Similarity=0.058 Sum_probs=76.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCCh----hHHHHHHHHHHh
Q 048578 304 GGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNV----KHYGCLVDLLCR 379 (519)
Q Consensus 304 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 379 (519)
....+.|++++++.....-++.. +-|...-..+++.+|-.|++++|.+-++...+- .|+. ..|..+|++
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a--- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA--- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH---
Confidence 34567788888888888877764 556677778888889999999999888887662 3442 234444433
Q ss_pred cCChHHHHH-HHHhC----CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCch
Q 048578 380 ARLLDEAYE-VIRNM----PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGN 438 (519)
Q Consensus 380 ~~~~~~A~~-~~~~~----~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (519)
+...+ +|.-- -+.....-...++.+..... .|+.++|..+-.++.+.-|..+..
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~-~G~~~~A~~lr~~A~e~ap~~~G~ 136 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMV-SQDYEQVSELALQIEELRQEKGFL 136 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHHhcCcccCCC
Confidence 22222 22211 11112334444555533211 688999999999988888775543
No 259
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.04 E-value=4.3 Score=28.97 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 048578 213 EGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKN 259 (519)
Q Consensus 213 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 259 (519)
+..+-++.+....+.|++....+.+++|.+.+++..|.++++.+...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34555556666666777777777777777777777777777766654
No 260
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=85.54 E-value=38 Score=35.42 Aligned_cols=251 Identities=11% Similarity=-0.047 Sum_probs=131.1
Q ss_pred HHHHhcCChHHHHHHHhcCCC----Cchh--HHHHHHHHHHHcCChhHHHHHHHHHHhCCC--CCC---H-HH-HH--HH
Q 048578 172 TFYCNFGDVKSAQLLFDQMTE----KNVV--TWTAMINGHVKQKNYREGIDLFRKMRDSGV--EVN---E-LT-LV--SV 236 (519)
Q Consensus 172 ~~~~~~g~~~~A~~~~~~~~~----~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~---~-~~-~~--~l 236 (519)
-+....|+.++++.++..... .+.. .-..+.-+....|..+++..++.......- .-+ . .. -. .+
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 345667888888888877654 1222 223344455566666677777766554310 001 1 11 11 12
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCcchh--HHHHHHHHHHhcCCHHHHHHHHhhcCCC-Chhh--HHHHHHHHHHcCC
Q 048578 237 LSACANLGASELGKWVHEFVNKNCIILNDK--LGAALTDMYAKCGYIEEALRVFKIVLEK-NVCT--WNSIIGGLAIHGC 311 (519)
Q Consensus 237 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~--~~~l~~~~~~~g~ 311 (519)
.-++...++. .+...+..+..... .... .--+|...+...|+-+-...++..+.+. +... ...+.-++...|+
T Consensus 462 Gla~~GS~~e-ev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSANI-EVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCCH-HHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCCH-HHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 2223333443 34444444443321 1111 2223444556677777777777655332 2222 3333444557788
Q ss_pred hHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 048578 312 GEEAVKMFWQMQMSGIKPDDV--TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEV 389 (519)
Q Consensus 312 ~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 389 (519)
.+.+..+++.+.... .|-.. ....+.-+|+..|+.....+++..+.. ....++.....+.-++...|+.+.+.++
T Consensus 540 ~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 540 QELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred hHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 888888888887631 22222 222445578899998888889888887 2333444444444455556776666777
Q ss_pred HHhC--CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHH
Q 048578 390 IRNM--PMEPNAVLWGSLLTACASADDGANVELAEIAMERLI 429 (519)
Q Consensus 390 ~~~~--~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~ 429 (519)
++.+ ...|...--..+.-+....+ .++ ..+...+..+.
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aG-n~~-~~aid~L~~L~ 656 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAG-KGL-QSAIDVLDPLT 656 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSS-SCC-HHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccC-CCc-HHHHHHHHHHc
Confidence 6655 22344333333333333311 232 56666666664
No 261
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.28 E-value=26 Score=33.26 Aligned_cols=198 Identities=9% Similarity=0.016 Sum_probs=119.5
Q ss_pred cCChHHHHHHHhcCCC-----C----chhHHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHH----hc
Q 048578 177 FGDVKSAQLLFDQMTE-----K----NVVTWTAMINGHVKQKNYREGIDLFRKMRDS-GVEVNELTLVSVLSAC----AN 242 (519)
Q Consensus 177 ~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~----~~ 242 (519)
.|+++.|.+.+-.+.+ . .......++..|...|+++...+.+.-+.+. |..+ .....++..+ ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhc
Confidence 3678888887755542 1 2345777889999999999998888776544 3322 2233344332 23
Q ss_pred cCChHHHHH--HHHHHHH--cC-CCc---chhHHHHHHHHHHhcCCHHHHHHHHhhcCC----C-C----hhhHHHHHHH
Q 048578 243 LGASELGKW--VHEFVNK--NC-IIL---NDKLGAALTDMYAKCGYIEEALRVFKIVLE----K-N----VCTWNSIIGG 305 (519)
Q Consensus 243 ~~~~~~a~~--~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-~----~~~~~~l~~~ 305 (519)
....+.... +.+.... .| +-. .......|...|...|++.+|.+++..+.. . + +..+...+..
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 333332211 1111110 11 111 234456788999999999999999988742 1 1 3467777889
Q ss_pred HHHcCChHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHh
Q 048578 306 LAIHGCGEEAVKMFWQMQM----SGIKPDD--VTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCR 379 (519)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~~----~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (519)
|...+++..|..++.++.. ....|+. ..+...+..+...+++.+|... |..+...+..
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~----------------y~e~~~~~~~ 250 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQY----------------LQEIYQTDAI 250 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHH----------------HHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHH----------------HHHHHhcccc
Confidence 9999999999999998742 2223332 2445555556666666555443 4455666666
Q ss_pred cCChHHHHHHHHh
Q 048578 380 ARLLDEAYEVIRN 392 (519)
Q Consensus 380 ~~~~~~A~~~~~~ 392 (519)
.++.......+..
T Consensus 251 ~~d~~~~~~~L~~ 263 (445)
T 4b4t_P 251 KSDEAKWKPVLSH 263 (445)
T ss_dssp HSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 7776655554443
No 262
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=85.19 E-value=7.9 Score=27.43 Aligned_cols=60 Identities=10% Similarity=-0.018 Sum_probs=47.0
Q ss_pred HHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 048578 172 TFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLV 234 (519)
Q Consensus 172 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 234 (519)
..+...|++++|..+.+....||...|-+|.. .+.|.-+++..-+.++...| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 44778899999999999998899999987765 57888888888887887766 45544443
No 263
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.92 E-value=8.4 Score=27.34 Aligned_cols=60 Identities=17% Similarity=0.127 Sum_probs=46.6
Q ss_pred HHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 048578 172 TFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLV 234 (519)
Q Consensus 172 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 234 (519)
..+...|++++|..+.+...-||...|-+|.. .+.|.-+++..-+.++...| .|....|.
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 44778899999999999999999999987765 57788888888887777665 45544443
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=82.97 E-value=2.6 Score=36.51 Aligned_cols=50 Identities=10% Similarity=0.057 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048578 415 GANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKE 464 (519)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (519)
.|+++.++..+...++.+|.|......|...++-.|+|+.|.+-++...+
T Consensus 10 ~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 10 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555555555555554444443
No 265
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.02 E-value=32 Score=31.87 Aligned_cols=286 Identities=8% Similarity=0.030 Sum_probs=147.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC--------CchhHHHHHHHHHHHcCC-hhHHHHHHHHHHhCCCCCCHHHH--
Q 048578 165 HSLTRLITFYCNFGDVKSAQLLFDQMTE--------KNVVTWTAMINGHVKQKN-YREGIDLFRKMRDSGVEVNELTL-- 233 (519)
Q Consensus 165 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~-- 233 (519)
.....|...|.+.|+.++...++..... .....-..++..+....+ .+.-.++..+..+.. .-+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4566788889999999999999888765 123345667777766433 333333333332210 0011122
Q ss_pred ----HHHHHHHhccCChHHHHHHHHHHHHcCCC-----cchhHHHHHHHHHHhcCCHHHHHHHHhhcCC------CChhh
Q 048578 234 ----VSVLSACANLGASELGKWVHEFVNKNCII-----LNDKLGAALTDMYAKCGYIEEALRVFKIVLE------KNVCT 298 (519)
Q Consensus 234 ----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~ 298 (519)
..++..|...|++.+|..++..+.+.--. .-..++..-+..|...+++.++...+..... +++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 24667778888888888777777663211 1233455566677777888777777755421 22222
Q ss_pred HHH----HHHHHH-HcCChHHHHHHHHHHHH----CCCCCCH---HHHHHHHHHHhccCcHHHHHHHH-HHcHHhcCCCC
Q 048578 299 WNS----IIGGLA-IHGCGEEAVKMFWQMQM----SGIKPDD---VTLIAVLTACSHAGLIEKGKEIF-YNMRRDYKVEP 365 (519)
Q Consensus 299 ~~~----l~~~~~-~~g~~~~a~~~~~~m~~----~g~~p~~---~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~ 365 (519)
... -.-.+. ..++|..|...|-+..+ .| .|.. ..|..+. +...... .+...++ ......+ ..|
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~-~~~~~~~lkYlvL~-aLl~~~r-~el~~~l~~~~~~~~-~~p 254 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVD-SVKALTSLKYMLLC-KIMLGQS-DDVNQLVSGKLAITY-SGR 254 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHH-HHHTTCG-GGHHHHHHSHHHHTT-CSH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccc-cHHHHHHHHHHHHH-HHHcCCH-HHHHHHhcccccccc-CCc
Confidence 111 122344 56778877777766532 11 1111 1222222 2222221 1111222 1211212 235
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 048578 366 NVKHYGCLVDLLCRARLLDEAYEVIRNM--PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMS 443 (519)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (519)
....+..++.+| ..+++.+...+++.. .+..|......+ ..+.+ .--...+.++ ..|-....+..++
T Consensus 255 ei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~-~~L~~-------~Ir~~~L~~i--~~pYsrIsl~~iA 323 (394)
T 3txn_A 255 DIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHL-GTLYD-------TMLEQNLCRI--IEPYSRVQVAHVA 323 (394)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHH-HHHHH-------HHHHHHHHHH--HTTCSEEEHHHHH
T ss_pred cHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHH-HHHHH-------HHHHHHHHHH--hHhhceeeHHHHH
Confidence 554455555543 455666666666665 233344321111 11111 0001111111 2355667777777
Q ss_pred HHHHhcCCchHHHHHHHHHHhCCCc
Q 048578 444 NIYAAKAQWDDAGKMRRLMKERNIV 468 (519)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (519)
..+.- ..++++..+-+|...|.-
T Consensus 324 ~~l~l--s~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 324 ESIQL--PMPQVEKKLSQMILDKKF 346 (394)
T ss_dssp HHHTC--CHHHHHHHHHHHHHTTSS
T ss_pred HHHCc--CHHHHHHHHHHHHHCCCe
Confidence 77654 678999999999877753
No 266
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=81.16 E-value=16 Score=27.71 Aligned_cols=73 Identities=8% Similarity=-0.072 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHHhccCc---HHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH
Q 048578 327 IKPDDVTLIAVLTACSHAGL---IEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM-PMEPNAV 400 (519)
Q Consensus 327 ~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~ 400 (519)
-.|+..|--.+..++.++.+ ..+++.+++.+.+. +-.-....+..|.-++.+.|++++|.+..+.+ .+.|+..
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 35666655555555555543 44677777777663 21112445556666777777777777777666 5566543
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.00 E-value=13 Score=28.15 Aligned_cols=47 Identities=13% Similarity=0.087 Sum_probs=33.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 048578 214 GIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNC 260 (519)
Q Consensus 214 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 260 (519)
..+-++.+....+.|++......+++|.+.+|+..|..+++-++...
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~ 118 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 118 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 44555566666677777777777777777777777777777776543
No 268
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=77.17 E-value=20 Score=27.88 Aligned_cols=80 Identities=8% Similarity=0.036 Sum_probs=50.4
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhC--CCCCchHHHHHHHHHhcCCchHHHHHHH
Q 048578 384 DEAYEVIRNM-PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLE--PFNDGNYVLMSNIYAAKAQWDDAGKMRR 460 (519)
Q Consensus 384 ~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 460 (519)
+.+...|... ..+-|..-...-+...-. ..+ +..+|..+.+.+ ..-+..|...+..+...|++++|.++|+
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~---~~d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 125 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEY---NSD---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ 125 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTT---BSC---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHh---cCC---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445555444 334455544433333222 223 667777776654 4456778888888888888888888888
Q ss_pred HHHhCCCcc
Q 048578 461 LMKERNIVK 469 (519)
Q Consensus 461 ~m~~~~~~~ 469 (519)
.-.+++-.|
T Consensus 126 ~Gi~~~A~P 134 (152)
T 4a1g_A 126 RGIQNQAEP 134 (152)
T ss_dssp HHHHTTCBS
T ss_pred HHHHcCCcc
Confidence 887777665
No 269
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.89 E-value=13 Score=35.14 Aligned_cols=93 Identities=10% Similarity=-0.025 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC------CChhhHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCCCHHH--HH
Q 048578 267 LGAALTDMYAKCGYIEEALRVFKIVLE------KNVCTWNSIIGGLAIHGCGEEAVKMFWQMQM---SGIKPDDVT--LI 335 (519)
Q Consensus 267 ~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~~--~~ 335 (519)
+...+...|.+.|+++.|.+.|.++.. .-...+-..+..+...+++..+...+.+... .+..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 444556666666666666666655532 1223455555566666666666666655532 222222221 11
Q ss_pred HHHHHHhccCcHHHHHHHHHHcHH
Q 048578 336 AVLTACSHAGLIEKGKEIFYNMRR 359 (519)
Q Consensus 336 ~l~~~~~~~g~~~~a~~~~~~~~~ 359 (519)
.-...+...+++..|...|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 111123445556665555555444
No 270
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=74.25 E-value=48 Score=29.54 Aligned_cols=67 Identities=10% Similarity=0.036 Sum_probs=46.5
Q ss_pred ChHHHHHHHHhC---CCCCCH--HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHH
Q 048578 382 LLDEAYEVIRNM---PMEPNA--VLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAG 456 (519)
Q Consensus 382 ~~~~A~~~~~~~---~~~p~~--~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 456 (519)
+..+.+++-.-+ +++|.. .+....+..+.+ .+|+..|..+.+++++++|.. ...++|.
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K---~KNy~tAa~fArrLLel~p~~--------------~~a~qAr 247 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFK---HKNFLQASYFAGEFLKIISSG--------------PRAEQAR 247 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHTTCCSS--------------HHHHHHH
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHhcCCCH--------------HHHHHHH
Confidence 334444443333 666643 367777777888 999999999999999999852 1346677
Q ss_pred HHHHHHHhC
Q 048578 457 KMRRLMKER 465 (519)
Q Consensus 457 ~~~~~m~~~ 465 (519)
+++..-.+.
T Consensus 248 kil~~ce~~ 256 (325)
T 3mv2_A 248 KIKNKADSM 256 (325)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHhcC
Confidence 777776544
No 271
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.15 E-value=24 Score=33.33 Aligned_cols=59 Identities=8% Similarity=0.086 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC------CchhHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 048578 165 HSLTRLITFYCNFGDVKSAQLLFDQMTE------KNVVTWTAMINGHVKQKNYREGIDLFRKMRD 223 (519)
Q Consensus 165 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 223 (519)
.+...+...|.+.|++++|.++|.++.. .-...+-.+++.+...+++..+...+.+...
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3566677778888888888888877654 2234566677777777788777777776643
No 272
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=72.27 E-value=38 Score=27.50 Aligned_cols=82 Identities=11% Similarity=0.080 Sum_probs=37.2
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048578 161 NSVIHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSAC 240 (519)
Q Consensus 161 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 240 (519)
.++..+-...+..+.+.+..+....+.+.+..++...-...+.++...+..+.. ..+..+.. .++...-...+.++
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL 100 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAAVAL 100 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHHHHH
Confidence 344444444455555555544444444555455555444455555555543322 22222222 23444444444444
Q ss_pred hccCCh
Q 048578 241 ANLGAS 246 (519)
Q Consensus 241 ~~~~~~ 246 (519)
.+.++.
T Consensus 101 ~~~~~~ 106 (201)
T 3ltj_A 101 GQIGDE 106 (201)
T ss_dssp HHHCCG
T ss_pred HHhCcH
Confidence 444443
No 273
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=71.81 E-value=40 Score=27.61 Aligned_cols=43 Identities=9% Similarity=0.115 Sum_probs=18.3
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCC
Q 048578 168 TRLITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKN 210 (519)
Q Consensus 168 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 210 (519)
...+..+.+.|+.+....+.+.+..++...-...+.++...++
T Consensus 37 ~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 37 RAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp HHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 3334444444443333333444444444444444444444443
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=70.60 E-value=43 Score=27.48 Aligned_cols=54 Identities=15% Similarity=0.047 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHhhC--CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 048578 416 ANVELAEIAMERLIKLE--PFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVK 469 (519)
Q Consensus 416 ~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 469 (519)
++...+..+|..+...+ ..-+..|...+..+...|++.+|.++|+.-.+++-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34667777777776544 4456677777777777788888888777776666655
No 275
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=69.15 E-value=29 Score=27.42 Aligned_cols=49 Identities=10% Similarity=-0.004 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhC--CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 048578 421 AEIAMERLIKLE--PFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVK 469 (519)
Q Consensus 421 a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 469 (519)
...+|..+.+.+ ..-+..|...+..+...|++.+|.++|+.-.+++-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 444555555443 4456677777777777777777777777777766655
No 276
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=66.04 E-value=1.1e+02 Score=30.41 Aligned_cols=393 Identities=8% Similarity=-0.068 Sum_probs=201.8
Q ss_pred HHHHHHHHHhc-CCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 048578 47 KQVHAQIIKAS-FDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGN 125 (519)
Q Consensus 47 ~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 125 (519)
.++...+.+.. .+.....-..-+..+.+. +++......+.. .+.+...-.....+....|+..+|......+-..
T Consensus 56 ~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~---~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~ 131 (618)
T 1qsa_A 56 VTVTNFVRANPTLPPARTLQSRFVNELARR---EDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (618)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHT---TCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCChhHHHHHHHHHHHHHhC---CCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Confidence 46666666543 222223334445566666 899998887776 4445555555677888899988888888887766
Q ss_pred CCCCCcchHHHHHHHHcCccc--hHHHHHHHHHh---C----------CCCCchh-HHHHHHHHHHhcCChHHHHHHHhc
Q 048578 126 GLDPDSFTYPILLKACGDLRQ--VKGVHSLVVKS---K----------DFNSVIH-SLTRLITFYCNFGDVKSAQLLFDQ 189 (519)
Q Consensus 126 g~~p~~~~~~~ll~~~~~~~~--~~~~~~~~~~~---~----------~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 189 (519)
| ...+.....++..+.+.|. .+.++..+... + .++++.. ....++..+. +...+......
T Consensus 132 ~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~ 207 (618)
T 1qsa_A 132 G-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFART 207 (618)
T ss_dssp S-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHH
T ss_pred C-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhc
Confidence 5 3455666777777775555 22333333211 1 0111111 1111222111 12222222222
Q ss_pred CCCCchh---HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHH----HHHHhccCChHHHHHHHHHHHHcCCC
Q 048578 190 MTEKNVV---TWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSV----LSACANLGASELGKWVHEFVNKNCII 262 (519)
Q Consensus 190 ~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l----l~~~~~~~~~~~a~~~~~~~~~~~~~ 262 (519)
. .++.. .+..-+.-+.+ .+.+.|...+....... ..+......+ .......+....+...+.......
T Consensus 208 ~-~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~-- 282 (618)
T 1qsa_A 208 T-GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS-- 282 (618)
T ss_dssp S-CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--
T ss_pred c-CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--
Confidence 1 11111 11112222333 37788888888876543 2233332222 222334442444555555444332
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048578 263 LNDKLGAALTDMYAKCGYIEEALRVFKIVLEKN---VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLT 339 (519)
Q Consensus 263 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 339 (519)
.+.....-.+....+.|+++.|...|..+.... .....=+..++...|+.++|..+|+.+.. +. +|..++.
T Consensus 283 ~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~----~~--~fYg~lA 356 (618)
T 1qsa_A 283 QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QR--GFYPMVA 356 (618)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SC--SHHHHHH
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc----CC--ChHHHHH
Confidence 333344445555667799999999999886642 22233345567788999999999988864 11 3333331
Q ss_pred HHhccCcHHHHHHHHHHcHHhcCCCCC-h-----hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHcccc
Q 048578 340 ACSHAGLIEKGKEIFYNMRRDYKVEPN-V-----KHYGCLVDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASAD 413 (519)
Q Consensus 340 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~ 413 (519)
..+.|..-. +.. ....+. . ..-...+..+...|....|...+....-..+......+......
T Consensus 357 -a~~Lg~~~~-------~~~-~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~-- 425 (618)
T 1qsa_A 357 -AQRIGEEYE-------LKI-DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFN-- 425 (618)
T ss_dssp -HHHTTCCCC-------CCC-CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--
T ss_pred -HHHcCCCCC-------CCC-CCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH--
Confidence 122221000 000 000010 0 01123355677889999998877766112333333344444455
Q ss_pred CCCCHHHHHHHHHHHHhhCC---CCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccC
Q 048578 414 DGANVELAEIAMERLIKLEP---FNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKN 470 (519)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 470 (519)
.|..+.+.....+....+. .-|..|...+.-+.+.-.++.++-.---.++.++.|.
T Consensus 426 -~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~ 484 (618)
T 1qsa_A 426 -NQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPK 484 (618)
T ss_dssp -TTCHHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTT
T ss_pred -CCChHHHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCC
Confidence 7778877765544322220 1134566677777766666665544334456666654
No 277
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=65.95 E-value=54 Score=26.81 Aligned_cols=169 Identities=11% Similarity=0.049 Sum_probs=93.3
Q ss_pred CChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 048578 178 GDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVN 257 (519)
Q Consensus 178 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 257 (519)
++.+....+.+.+..++...-...+..+.+.+..+ +...+..+.. .++...-...+.++.+.++.+....+...+
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l- 90 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIKAL- 90 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHHHT-
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHH-
Confidence 33444444555556677766666777777777643 3333333433 346666666666666666644333333322
Q ss_pred HcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048578 258 KNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAV 337 (519)
Q Consensus 258 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 337 (519)
+ .++..+-...+.++.+.|+.+....+...+..++...-...+.++...|..+ +...+.++.. .++...-...
T Consensus 91 ~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a 163 (211)
T 3ltm_A 91 K---DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSA 163 (211)
T ss_dssp T---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHH
T ss_pred c---CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHH
Confidence 2 3556666666777777776544444444445566666666666666666543 4444444443 4555555566
Q ss_pred HHHHhccCcHHHHHHHHHHcHH
Q 048578 338 LTACSHAGLIEKGKEIFYNMRR 359 (519)
Q Consensus 338 ~~~~~~~g~~~~a~~~~~~~~~ 359 (519)
+.++.+.+. ..+...+..+.+
T Consensus 164 ~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 164 ADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHhCc-hhHHHHHHHHHh
Confidence 666666665 344444444444
No 278
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=63.65 E-value=48 Score=25.45 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=18.4
Q ss_pred HHHccccCCCCHHHHHHHHHHHHhhCCCCCchH
Q 048578 407 TACASADDGANVELAEIAMERLIKLEPFNDGNY 439 (519)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 439 (519)
-++.+ .|++++|.++.+.+++..|+|..+.
T Consensus 85 vg~yk---l~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 85 IGCYK---LGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp HHHHT---TTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred HHHHH---hhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 34555 6666666666666666666654443
No 279
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=62.80 E-value=72 Score=27.23 Aligned_cols=16 Identities=25% Similarity=0.613 Sum_probs=7.6
Q ss_pred HHhcCChHHHHHHHhc
Q 048578 174 YCNFGDVKSAQLLFDQ 189 (519)
Q Consensus 174 ~~~~g~~~~A~~~~~~ 189 (519)
.+..|+.+-+..+++.
T Consensus 112 A~~~~~~~~~~~Ll~~ 127 (285)
T 1wdy_A 112 AAVYGKVKALKFLYKR 127 (285)
T ss_dssp HHHTTCHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHh
Confidence 3444555554444444
No 280
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=61.03 E-value=65 Score=28.00 Aligned_cols=92 Identities=7% Similarity=0.009 Sum_probs=44.0
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCch
Q 048578 374 VDLLCRARLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWD 453 (519)
Q Consensus 374 ~~~~~~~~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 453 (519)
+...+..|+.+-+.-+++......+...-...+...+. .|+.+-+..+++.....+..+.......+......|+
T Consensus 133 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~---~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~-- 207 (285)
T 3kea_A 133 FYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIK---NGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKD-- 207 (285)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHH---TTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTC--
T ss_pred HHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHH---cChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCC--
Confidence 34445566666555555544211122112223334445 6777777777776655553332222221222233444
Q ss_pred HHHHHHHHHHhCCCccCCc
Q 048578 454 DAGKMRRLMKERNIVKNPG 472 (519)
Q Consensus 454 ~A~~~~~~m~~~~~~~~~~ 472 (519)
.++.+.+.+.|..++..
T Consensus 208 --~~~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 208 --IEMLQALFKYDINIYSA 224 (285)
T ss_dssp --HHHHHHHTTSCBCSTTT
T ss_pred --HHHHHHHHHcCCCCCCC
Confidence 34555566777665433
No 281
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=58.32 E-value=46 Score=27.83 Aligned_cols=47 Identities=11% Similarity=0.042 Sum_probs=23.2
Q ss_pred HHHHHHHhhC--CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 048578 423 IAMERLIKLE--PFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVK 469 (519)
Q Consensus 423 ~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 469 (519)
.+|..+...+ ..-+..|...+..+...|++.+|.++|+.-.+++-.|
T Consensus 135 ~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 135 ELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp HHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred HHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3444444332 3334455555555555555555555555554444433
No 282
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=55.26 E-value=55 Score=25.45 Aligned_cols=34 Identities=9% Similarity=0.039 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC
Q 048578 196 VTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVN 229 (519)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 229 (519)
..|......+-..|++.+|.++|+.-++.+-.|-
T Consensus 102 lfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 102 PLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3455556666666666666666666666655553
No 283
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=54.91 E-value=82 Score=25.37 Aligned_cols=162 Identities=10% Similarity=0.004 Sum_probs=91.6
Q ss_pred HHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcc
Q 048578 185 LLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILN 264 (519)
Q Consensus 185 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 264 (519)
.+++.+..+|...-...+.++.+.+..+....+. ++.. .++...-...+.++...++.+....+... .. .++
T Consensus 18 ~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~~~L~~~~~~~~~~~L~~~-l~---d~~ 89 (201)
T 3ltj_A 18 MYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLI-KALK---DEDAWVRRAAADALGQIGDERAVEPLIKA-LK---DED 89 (201)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHH-TT---CSS
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHH-HHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHH-Hc---CCC
Confidence 3445555677776666777777777644433333 3333 34666655666666666665444333332 22 356
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 048578 265 DKLGAALTDMYAKCGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHA 344 (519)
Q Consensus 265 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 344 (519)
..+-...+.++.+.|+.+....+...+..++...-...+.++.+.++. ++...+..+.. .++...-...+.++...
T Consensus 90 ~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 90 GWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEI 165 (201)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHh
Confidence 666667777777777654444444555556666666666666666653 34444444443 35656666666666666
Q ss_pred CcHHHHHHHHHHcHH
Q 048578 345 GLIEKGKEIFYNMRR 359 (519)
Q Consensus 345 g~~~~a~~~~~~~~~ 359 (519)
|.. .+...+..+..
T Consensus 166 ~~~-~~~~~L~~~l~ 179 (201)
T 3ltj_A 166 GGE-RVRAAMEKLAE 179 (201)
T ss_dssp CSH-HHHHHHHHHHH
T ss_pred Cch-hHHHHHHHHHh
Confidence 653 34445555544
No 284
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=53.51 E-value=73 Score=33.73 Aligned_cols=86 Identities=3% Similarity=-0.175 Sum_probs=53.5
Q ss_pred HHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCC----------------
Q 048578 337 VLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNM--PMEPN---------------- 398 (519)
Q Consensus 337 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~p~---------------- 398 (519)
++..|...|..+-|.++...+ +.++..--.+.++|...|++++|.+.|+++ |+..+
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 566677778877666544333 223333346788899999999999999988 33211
Q ss_pred -------HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhh
Q 048578 399 -------AVLWGSLLTACASADDGANVELAEIAMERLIKL 431 (519)
Q Consensus 399 -------~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 431 (519)
..-|..++..+-. .+-++.+.++.+.+++.
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~---~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFE---ESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhh
Confidence 0134445555555 66666666666666653
No 285
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=52.59 E-value=1.9e+02 Score=28.92 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCc
Q 048578 100 NTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDL 144 (519)
Q Consensus 100 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 144 (519)
=.+|-.|.+.|++++|.++.++.... +.--...|...+..++..
T Consensus 156 Wa~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 156 WALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC---
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHhC
Confidence 35788899999999999998776542 111224677777777643
No 286
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=52.32 E-value=72 Score=23.93 Aligned_cols=65 Identities=14% Similarity=0.246 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCch---hHHHHHHHHHHHcCC--hhHHHHHHHHHHhCCCCCCHH
Q 048578 167 LTRLITFYCNFGDVKSAQLLFDQMTEKNV---VTWTAMINGHVKQKN--YREGIDLFRKMRDSGVEVNEL 231 (519)
Q Consensus 167 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~ 231 (519)
...++.=|...|+.++|.+.++++..|.- .....+..++-+.++ .+.+.+++..+...|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 45677778888999999999999876532 233344444444432 456778888887777554443
No 287
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=52.09 E-value=42 Score=30.44 Aligned_cols=94 Identities=10% Similarity=-0.054 Sum_probs=48.0
Q ss_pred CcccHHHHHHhccCchHHHHHHHHHHHhcCCCCchhH--HHHHHHHHhhcCCCChHHHHHHHhcCCCCCcchHHHHHHHH
Q 048578 29 KSHHHLPLLQKCTHLVQFKQVHAQIIKASFDNRTISD--TQLAKLIESLVNSSQIAYAHLVFNQIINPSTFAFNTVIRGY 106 (519)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~ 106 (519)
|..-.+.+..++. .++ ..+++.+++.|..++.... .+.+...+.. |+.+-+..+++.-...+...-...+...
T Consensus 17 d~~g~t~L~~Aa~-~g~-~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~g~t~L~~A 91 (364)
T 3ljn_A 17 DDENMEKIHVAAR-KGQ-TDEVRRLIETGVSPTIQNRFGCTALHLACKF---GCVDTAKYLASVGEVHSLWHGQKPIHLA 91 (364)
T ss_dssp CHHHHHHHHHHHH-HTC-HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH---CCHHHHHHHHHHCCCCCCBTTBCHHHHH
T ss_pred CCCCCCHHHHHHH-cCC-HHHHHHHHHcCCCccccCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCccccCCCCHHHHH
Confidence 4444444444432 111 4555666666766554321 1234444555 7777777777765443332222334445
Q ss_pred HhcCChhHHHHHHHHHHhCCC
Q 048578 107 AEAGLGHRGIQLYTQMIGNGL 127 (519)
Q Consensus 107 ~~~g~~~~a~~~~~~m~~~g~ 127 (519)
+..|+.+-+..+++.....|.
T Consensus 92 ~~~g~~~~v~~Ll~~~~~~~~ 112 (364)
T 3ljn_A 92 VMANKTDLVVALVEGAKERGQ 112 (364)
T ss_dssp HHTTCHHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHhccccCC
Confidence 566777666666665444343
No 288
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=51.89 E-value=64 Score=24.20 Aligned_cols=64 Identities=19% Similarity=0.103 Sum_probs=37.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCh---hhHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCH
Q 048578 268 GAALTDMYAKCGYIEEALRVFKIVLEKNV---CTWNSIIGGLAIHGC--GEEAVKMFWQMQMSGIKPDD 331 (519)
Q Consensus 268 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~g~~p~~ 331 (519)
...++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+.+..++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 34566777778888888888888765522 223333444444332 34566677777666644433
No 289
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=51.14 E-value=64 Score=27.33 Aligned_cols=23 Identities=4% Similarity=0.228 Sum_probs=14.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHh
Q 048578 201 MINGHVKQKNYREGIDLFRKMRD 223 (519)
Q Consensus 201 li~~~~~~~~~~~a~~~~~~m~~ 223 (519)
-++.+....++++|..++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 35566677777777777666543
No 290
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=50.16 E-value=96 Score=26.42 Aligned_cols=76 Identities=13% Similarity=0.074 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCCCCch---hHHHHHHHHHhhcCCCChHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChhHHHHHHH
Q 048578 47 KQVHAQIIKASFDNRTI---SDTQLAKLIESLVNSSQIAYAHLVFNQIINPS---TFAFNTVIRGYAEAGLGHRGIQLYT 120 (519)
Q Consensus 47 ~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~ 120 (519)
..+++.+.+.|..++.. .-.+.+...+.. |+.+-...+++.-..++ ...++ .+...+..|+.+ +++
T Consensus 18 ~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~----~v~ 89 (285)
T 1wdy_A 18 VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM---SREDIVELLLRHGADPVLRKKNGAT-PFLLAAIAGSVK----LLK 89 (285)
T ss_dssp HHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHT---TCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHHHHTCHH----HHH
T ss_pred HHHHHHHHHcCCCcccccCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCcccCCCCCC-HHHHHHHcCCHH----HHH
Confidence 34566666676655433 112344455555 77777777776643332 22222 233344555543 444
Q ss_pred HHHhCCCCCC
Q 048578 121 QMIGNGLDPD 130 (519)
Q Consensus 121 ~m~~~g~~p~ 130 (519)
.+.+.|..++
T Consensus 90 ~Ll~~g~~~~ 99 (285)
T 1wdy_A 90 LFLSKGADVN 99 (285)
T ss_dssp HHHHTTCCTT
T ss_pred HHHHcCCCCC
Confidence 4445565544
No 291
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=49.08 E-value=63 Score=28.75 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=41.0
Q ss_pred CCCCCH--HHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048578 394 PMEPNA--VLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERN 466 (519)
Q Consensus 394 ~~~p~~--~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (519)
+++|.. .+....+..+.+ .+|+..|..+.+++++++|... ..++|.+++..-.+.+
T Consensus 191 ~Lqp~H~~LaLr~AM~~a~K---~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~~ 248 (320)
T 3mkr_B 191 NLQPVHMILVLRTALNLFFK---LKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKNP 248 (320)
T ss_dssp CCCHHHHHHHHHHHHHHHHH---TTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHSC
T ss_pred CCcHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 666643 366777777888 9999999999999999987511 3456777777665543
No 292
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=48.92 E-value=61 Score=25.21 Aligned_cols=66 Identities=14% Similarity=0.243 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCch---hHHHHHHHHHHHcCC--hhHHHHHHHHHHhCCCCCCHH
Q 048578 166 SLTRLITFYCNFGDVKSAQLLFDQMTEKNV---VTWTAMINGHVKQKN--YREGIDLFRKMRDSGVEVNEL 231 (519)
Q Consensus 166 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~ 231 (519)
....++.=|...|+.++|.+.++++..|.- .....+..++-+.++ .+.+..++..+...|+-+...
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 345677778889999999999999976532 233344444444322 456777888887776554433
No 293
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=47.24 E-value=1.8e+02 Score=26.94 Aligned_cols=286 Identities=12% Similarity=0.090 Sum_probs=144.1
Q ss_pred chHHHHHHHHcCccchHHHHHHHHHhCCCCC------chhHHHHHHHHHHhcCC-hHHHHHHHhcCCC---CchhHH---
Q 048578 132 FTYPILLKACGDLRQVKGVHSLVVKSKDFNS------VIHSLTRLITFYCNFGD-VKSAQLLFDQMTE---KNVVTW--- 198 (519)
Q Consensus 132 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~--- 198 (519)
.....+...|.+.|+.+++.+.+.....+-+ .......+++.+....+ .+.-.++..+..+ ..-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777888888888888876543221 23345667777665433 3333333322221 111222
Q ss_pred ---HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHhccCChHHHHHHHHHHHHcC--CCcchhHH
Q 048578 199 ---TAMINGHVKQKNYREGIDLFRKMRDSGVEVNE-----LTLVSVLSACANLGASELGKWVHEFVNKNC--IILNDKLG 268 (519)
Q Consensus 199 ---~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~ 268 (519)
.-++..|...|++.+|.+++.++.+.=-..|. ..+..-+..|...+++.++...+....... +.+++.+.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 24677888889999988888888764111121 234455666778888888888887776532 22333322
Q ss_pred H----HHHHHHH-hcCCHHHHHHHHhhcC----CCChhh-----HHHHHHHHHHcCChHHHHHHHH-HHHHCCCCCCHHH
Q 048578 269 A----ALTDMYA-KCGYIEEALRVFKIVL----EKNVCT-----WNSIIGGLAIHGCGEEAVKMFW-QMQMSGIKPDDVT 333 (519)
Q Consensus 269 ~----~l~~~~~-~~g~~~~a~~~~~~~~----~~~~~~-----~~~l~~~~~~~g~~~~a~~~~~-~m~~~g~~p~~~~ 333 (519)
. .-...+. ..+++..|...|-+.. +-+... ...++.+. -.++..+.-.++. +....-..|....
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aL-l~~~r~el~~~l~~~~~~~~~~pei~~ 258 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKI-MLGQSDDVNQLVSGKLAITYSGRDIDA 258 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-HTTCGGGHHHHHHSHHHHTTCSHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH-HcCCHHHHHHHhccccccccCCccHHH
Confidence 2 2233455 6788888877775542 111111 11112222 2233323223222 2111112455555
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHccc
Q 048578 334 LIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARLLDEAYEVIRNMPMEP-NAVLWGSLLTACASA 412 (519)
Q Consensus 334 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~ 412 (519)
+..++.++ ..+++.....+++.... .+..|......+ ..+.+. -...++..+- .| +..++..+...+.-
T Consensus 259 l~~L~~a~-~~~dl~~f~~iL~~~~~--~l~~D~~l~~h~-~~L~~~-Ir~~~L~~i~----~pYsrIsl~~iA~~l~l- 328 (394)
T 3txn_A 259 MKSVAEAS-HKRSLADFQAALKEYKK--ELAEDVIVQAHL-GTLYDT-MLEQNLCRII----EPYSRVQVAHVAESIQL- 328 (394)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHSTT--TTTTSHHHHHHH-HHHHHH-HHHHHHHHHH----TTCSEEEHHHHHHHHTC-
T ss_pred HHHHHHHH-HhCCHHHHHHHHHHHHH--HHhcChHHHHHH-HHHHHH-HHHHHHHHHh----HhhceeeHHHHHHHHCc-
Confidence 66666554 44677777777766654 344454321111 111100 0111211111 12 23345555544443
Q ss_pred cCCCCHHHHHHHHHHHHhhC
Q 048578 413 DDGANVELAEIAMERLIKLE 432 (519)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~~~ 432 (519)
..++++..+.+++..+
T Consensus 329 ----s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 329 ----PMPQVEKKLSQMILDK 344 (394)
T ss_dssp ----CHHHHHHHHHHHHHTT
T ss_pred ----CHHHHHHHHHHHHHCC
Confidence 5677777777777655
No 294
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=43.25 E-value=88 Score=29.15 Aligned_cols=360 Identities=10% Similarity=0.066 Sum_probs=167.7
Q ss_pred HHHHHHhhcCCCChHHHHHHHhcCCCCCcc--hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCc---chHHHHHHHHc
Q 048578 68 LAKLIESLVNSSQIAYAHLVFNQIINPSTF--AFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPDS---FTYPILLKACG 142 (519)
Q Consensus 68 ll~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~ 142 (519)
.+...+.. |+.+-...+++.-..++.. .....+...+..|+.+-+..+++ .|..++. ...+.+ ...+
T Consensus 17 ~L~~Aa~~---g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L-~~A~ 88 (437)
T 1n11_A 17 PLHVASFM---GHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ----NKAKVNAKAKDDQTPL-HCAA 88 (437)
T ss_dssp HHHHHHHH---TCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH----HTCCSSCCCTTSCCHH-HHHH
T ss_pred HHHHHHHC---CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCCCHH-HHHH
Confidence 45555666 9999999998876544332 12234555667787765544443 3444332 222222 2233
Q ss_pred CccchHHHHHHHHHhCCCCCchh--HHHHHHHHHHhcCChHHHHHHHhcCCCC---chhHHHHHHHHHHHcCChhHHHHH
Q 048578 143 DLRQVKGVHSLVVKSKDFNSVIH--SLTRLITFYCNFGDVKSAQLLFDQMTEK---NVVTWTAMINGHVKQKNYREGIDL 217 (519)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~ 217 (519)
..|+. ++.+.+.+.+ ..++.. .-.+.+...+..|+.+.+..+++.-... +...+ +.+...+..|+.+-+
T Consensus 89 ~~g~~-~~v~~Ll~~g-a~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~-t~L~~A~~~g~~~~v--- 162 (437)
T 1n11_A 89 RIGHT-NMVKLLLENN-ANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGF-TPLHVAAKYGKVRVA--- 162 (437)
T ss_dssp HHTCH-HHHHHHHHHT-CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSC-CHHHHHHHTTCHHHH---
T ss_pred HCCCH-HHHHHHHhCC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCC-CHHHHHHHcCCHHHH---
Confidence 44443 4555555555 333321 1123344566778888888888765432 22222 234445666776544
Q ss_pred HHHHHhCCCCCCHHH--HHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhH--HHHHHHHHHhcCCHHHHHHHHhhcCC
Q 048578 218 FRKMRDSGVEVNELT--LVSVLSACANLGASELGKWVHEFVNKNCIILNDKL--GAALTDMYAKCGYIEEALRVFKIVLE 293 (519)
Q Consensus 218 ~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~ 293 (519)
+.+.+.|..++... -...+...+..|+.+.+ +.+.+.|..++... -.+.+...+..|+.+-+..+++.-..
T Consensus 163 -~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 237 (437)
T 1n11_A 163 -ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV----KLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS 237 (437)
T ss_dssp -HHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHH----HHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred -HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 34444554443211 01123334455665544 34444554333211 11234455677888877777765433
Q ss_pred C---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCCh
Q 048578 294 K---NVCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDV---TLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNV 367 (519)
Q Consensus 294 ~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 367 (519)
. +..-.+.+ ...+..|+.+- ++.+.+.|..++.. ..+. +...+..|..+-+..+++. |..++.
T Consensus 238 ~~~~~~~g~t~L-~~A~~~g~~~~----v~~Ll~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~-----g~~~~~ 306 (437)
T 1n11_A 238 ANAESVQGVTPL-HLAAQEGHAEM----VALLLSKQANGNLGNKSGLTP-LHLVAQEGHVPVADVLIKH-----GVMVDA 306 (437)
T ss_dssp TTCCCTTCCCHH-HHHHHTTCHHH----HHHHHTTTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHHH-----TCCTTC
T ss_pred CCCCCCCCCCHH-HHHHHCCCHHH----HHHHHhcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhC-----CccCCC
Confidence 2 22222233 33345566543 33444455444321 1222 2333455666554444432 333221
Q ss_pred ---hHHHHHHHHHHhcCChHHHHHHHHhCCCCCC---HHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHH
Q 048578 368 ---KHYGCLVDLLCRARLLDEAYEVIRNMPMEPN---AVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVL 441 (519)
Q Consensus 368 ---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 441 (519)
...+ .+...+..|+.+-+.-+++. +..++ ......|. .... .|+.+-+..+++.-...+..+..-...
T Consensus 307 ~~~~g~t-~L~~A~~~g~~~~v~~Ll~~-gad~n~~~~~g~t~L~-~A~~---~g~~~iv~~Ll~~ga~~~~~~~~g~t~ 380 (437)
T 1n11_A 307 TTRMGYT-PLHVASHYGNIKLVKFLLQH-QADVNAKTKLGYSPLH-QAAQ---QGHTDIVTLLLKNGASPNEVSSDGTTP 380 (437)
T ss_dssp CCSSCCC-HHHHHHHSSCSHHHHHHHHT-TCCTTCCCTTSCCHHH-HHHH---TTCHHHHHHHHHTTCCSCCCCSSSCCH
T ss_pred CCCCCCC-HHHHHHHcCcHHHHHHHHhc-CCCCCCCCCCCCCHHH-HHHH---CChHHHHHHHHHCcCCCCCCCCCCCCH
Confidence 1112 23344567777666555554 32322 22222232 3334 566665555554322222112222222
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhC
Q 048578 442 MSNIYAAKAQWDDAGKMRRLMKER 465 (519)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~m~~~ 465 (519)
+ ....+.|. .+..++++.....
T Consensus 381 l-~~A~~~g~-~~~~~~l~~~~~~ 402 (437)
T 1n11_A 381 L-AIAKRLGY-ISVTDVLKVVTDE 402 (437)
T ss_dssp H-HHHHHTTC-HHHHHHHHHHCCC
T ss_pred H-HHHHHcCc-HHHHHHHHhcccc
Confidence 2 22234444 5566666665443
No 295
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=43.15 E-value=58 Score=25.35 Aligned_cols=64 Identities=19% Similarity=0.103 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCh---hhHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCH
Q 048578 268 GAALTDMYAKCGYIEEALRVFKIVLEKNV---CTWNSIIGGLAIHGC--GEEAVKMFWQMQMSGIKPDD 331 (519)
Q Consensus 268 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~g~~p~~ 331 (519)
...++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 34566777778888888888888765522 223333444444322 34466666666666644433
No 296
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=40.33 E-value=41 Score=23.77 Aligned_cols=38 Identities=13% Similarity=-0.007 Sum_probs=29.6
Q ss_pred CCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChHHHH
Q 048578 279 GYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGEEAV 316 (519)
Q Consensus 279 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 316 (519)
...++|.++++.+..++..+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887667655443
No 297
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=39.50 E-value=85 Score=26.22 Aligned_cols=45 Identities=7% Similarity=0.118 Sum_probs=20.9
Q ss_pred chHHHHHHHHHhCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 048578 146 QVKGVHSLVVKSKDFNS-VIHSLTRLITFYCNFGDVKSAQLLFDQMT 191 (519)
Q Consensus 146 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 191 (519)
+...++..|...+ +.. -...|......+...|++.+|..+|+.-.
T Consensus 132 ~p~~if~~L~~~~-IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 177 (223)
T 4aez_C 132 EPVELFSFLAHHH-IGQESSIFYEEYANYFESRGLFQKADEVYQKGK 177 (223)
T ss_dssp CHHHHHHHHHHTT-CSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCC-cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444 222 23344444555555555555555554433
No 298
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=39.11 E-value=1.1e+02 Score=25.15 Aligned_cols=43 Identities=12% Similarity=0.162 Sum_probs=22.8
Q ss_pred HHHHHHHHHhcCCCCchh--HHHHHHHHHhhcCCCChHHHHHHHhcCC
Q 048578 47 KQVHAQIIKASFDNRTIS--DTQLAKLIESLVNSSQIAYAHLVFNQII 92 (519)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~~~~A~~~~~~~~ 92 (519)
..+++.+.+.|..++... ..+.+...+.. |+.+-...+++...
T Consensus 22 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 22 YERCRELVEAGYDVRQPDKENVTLLHWAAIN---NRIDLVKYYISKGA 66 (240)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHHTTC
T ss_pred hHHHHHHHHcCCCcCCCCCCCCCHHHHHHHh---CCHHHHHHHHHcCC
Confidence 344555666665544321 11234445555 77777766666553
No 299
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=38.46 E-value=2.6e+02 Score=26.44 Aligned_cols=95 Identities=7% Similarity=0.032 Sum_probs=54.3
Q ss_pred CCCcccHHHHHHhccCchHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcCCCChHHHHHHHhcCCC---CCcchHHHHH
Q 048578 27 ATKSHHHLPLLQKCTHLVQFKQVHAQIIKASFDNRTISDTQLAKLIESLVNSSQIAYAHLVFNQIIN---PSTFAFNTVI 103 (519)
Q Consensus 27 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll 103 (519)
.+|..+....+...- .+..-.+....+.|++.-...|..-.+.+... |++++|-++--..+. ++..+.+.+-
T Consensus 328 ~v~e~~ivpyi~~~l--~n~~lA~~lA~R~~LpGAd~L~~~~F~~l~~~---g~y~~AA~~aA~sP~giLRt~~Ti~rFk 402 (494)
T 1bpo_A 328 CVEEENIIPYITNVL--QNPDLALRMAVRNNLAGAEELFARKFNALFAQ---GNYSEAAKVAANAPKGILRTPDTIRRFQ 402 (494)
T ss_dssp EECTTTHHHHHHHTT--CCHHHHHHHHHHTTCSSCHHHHHHHHHHHHHT---TCHHHHHHHHHHSGGGSSCSHHHHHHHT
T ss_pred EEccccchhhhhhcc--CCHHHHHHHHHhcCCccHHHHHHHHHHHHHHc---CCHHHHHHHHHhCccccccCHHHHHHHh
Confidence 345555555443322 22234555666777777666666666666666 888888887766543 3444444444
Q ss_pred HHHHhcCChhHHHHHHHHHHhCC
Q 048578 104 RGYAEAGLGHRGIQLYTQMIGNG 126 (519)
Q Consensus 104 ~~~~~~g~~~~a~~~~~~m~~~g 126 (519)
.+=...|+..--+..|..+.+.|
T Consensus 403 ~vp~~pgq~splL~YF~~Ll~~g 425 (494)
T 1bpo_A 403 SVPAQPGQTSPLLQYFGILLDQG 425 (494)
T ss_dssp TSCCCTTSCCHHHHHHHHHHHHS
T ss_pred cCCCCCCCCCHHHHHHHHHhccC
Confidence 43334455555556666555544
No 300
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=37.66 E-value=1.7e+02 Score=24.03 Aligned_cols=24 Identities=13% Similarity=-0.097 Sum_probs=11.6
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCC
Q 048578 105 GYAEAGLGHRGIQLYTQMIGNGLD 128 (519)
Q Consensus 105 ~~~~~g~~~~a~~~~~~m~~~g~~ 128 (519)
..++.|+.+.+..+++.+.+.|..
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC
Confidence 334455555555555544444433
No 301
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=36.99 E-value=2e+02 Score=24.58 Aligned_cols=40 Identities=13% Similarity=-0.030 Sum_probs=16.5
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcC
Q 048578 170 LITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQK 209 (519)
Q Consensus 170 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 209 (519)
.+..+.+.|..+....+.+.+..++...-...+.++.+.|
T Consensus 43 A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 43 SARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSC
T ss_pred HHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 3333444443332233333333444444444445555544
No 302
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=36.93 E-value=83 Score=26.60 Aligned_cols=29 Identities=3% Similarity=-0.271 Sum_probs=19.2
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 435 NDGNYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
.+......+..+.+.|+-++|.++|=+.+
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 34555566677777777777777765554
No 303
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=36.13 E-value=99 Score=23.65 Aligned_cols=38 Identities=8% Similarity=0.016 Sum_probs=17.8
Q ss_pred cCcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCC
Q 048578 344 AGLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARL 382 (519)
Q Consensus 344 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 382 (519)
.+..-.|.++++.+.+. +...+..|...-++.+...|-
T Consensus 34 ~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 34 SMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp CSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCC
Confidence 33444455555555442 333344444444555555544
No 304
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=35.77 E-value=2.1e+02 Score=24.45 Aligned_cols=18 Identities=11% Similarity=-0.095 Sum_probs=6.6
Q ss_pred CchhHHHHHHHHHHHcCC
Q 048578 193 KNVVTWTAMINGHVKQKN 210 (519)
Q Consensus 193 ~~~~~~~~li~~~~~~~~ 210 (519)
++...-...+.++...|+
T Consensus 140 ~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 140 KSTNVRRATAFAISVIND 157 (280)
T ss_dssp SCHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 444333334444444443
No 305
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.67 E-value=3.2e+02 Score=26.31 Aligned_cols=62 Identities=10% Similarity=-0.067 Sum_probs=43.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh-h------h-HHHHHHHHHHcCChHHHHHHHHHHHHC
Q 048578 264 NDKLGAALTDMYAKCGYIEEALRVFKIVLEKNV-C------T-WNSIIGGLAIHGCGEEAVKMFWQMQMS 325 (519)
Q Consensus 264 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~------~-~~~l~~~~~~~g~~~~a~~~~~~m~~~ 325 (519)
-..++|.+++.|...+.++.|..+..+..-|.. . . +..+...+.-.+++.+|.+.+......
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 356778888888888888888888888755422 1 1 122345566678888888888877653
No 306
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=34.33 E-value=3.7e+02 Score=26.91 Aligned_cols=42 Identities=19% Similarity=0.039 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHhhcCCCChHHHHHHHhcCCC---CCcchHHHHHHHHHh
Q 048578 63 ISDTQLAKLIESLVNSSQIAYAHLVFNQIIN---PSTFAFNTVIRGYAE 108 (519)
Q Consensus 63 ~~~~~ll~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~ 108 (519)
.+|. ++-.+.++ |.+++|.++.++... .-...+-..+..|+.
T Consensus 154 p~Wa-~IyY~LR~---G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 154 PIWA-LIFYLLRA---GLIKEALQVLVENKANIKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp EHHH-HHHHHHTT---TCHHHHHHHHHHTGGGC-----CHHHHHHHC--
T ss_pred ccHH-HHHHHHhc---CCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHh
Confidence 3554 56667778 999999999887632 112456666666663
No 307
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=34.11 E-value=1.7e+02 Score=23.11 Aligned_cols=47 Identities=9% Similarity=0.026 Sum_probs=23.2
Q ss_pred CChHHHHHHHhcCC-C---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 048578 79 SQIAYAHLVFNQII-N---PSTFAFNTVIRGYAEAGLGHRGIQLYTQMIGNGLDPD 130 (519)
Q Consensus 79 ~~~~~A~~~~~~~~-~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~ 130 (519)
|+.+....++..-. . .+...++. +...++.|+.+ +++.+.+.|..++
T Consensus 16 g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~ 66 (201)
T 3hra_A 16 RDTKKVKEILQDTTYQVDEVDTEGNTP-LNIAVHNNDIE----IAKALIDRGADIN 66 (201)
T ss_dssp TCHHHHHHHHTCTTCCTTCCCTTSCCH-HHHHHHHTCHH----HHHHHHHTTCCTT
T ss_pred ccHHHHHHHHHcCCCCCCCCCCCCCCH-HHHHHHcCCHH----HHHHHHHcCCCCC
Confidence 77777777776543 2 22222333 33344555543 3444444555444
No 308
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=32.78 E-value=37 Score=21.37 Aligned_cols=24 Identities=21% Similarity=-0.000 Sum_probs=16.0
Q ss_pred HhcCCchHHHHHHHHHHhCCCccC
Q 048578 447 AAKAQWDDAGKMRRLMKERNIVKN 470 (519)
Q Consensus 447 ~~~g~~~~A~~~~~~m~~~~~~~~ 470 (519)
...|+.+.|...+-.|...+..|+
T Consensus 34 a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 34 AQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HcCCCHHHHHHHHHcCcCCCCCCC
Confidence 345677777777777766666554
No 309
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=32.78 E-value=48 Score=23.39 Aligned_cols=39 Identities=13% Similarity=0.051 Sum_probs=32.7
Q ss_pred CChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChhHHHH
Q 048578 79 SQIAYAHLVFNQIINPSTFAFNTVIRGYAEAGLGHRGIQ 117 (519)
Q Consensus 79 ~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 117 (519)
.+.+.|.++++.++.....+|..++.++...|+..-|..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 478999999999999999999999999987777655543
No 310
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.34 E-value=1.4e+02 Score=28.73 Aligned_cols=63 Identities=11% Similarity=0.072 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHcHHhcCCCCCh--hHH-HHHHHHHHhcCChHHHHHHHHhC
Q 048578 331 DVTLIAVLTACSHAGLIEKGKEIFYNMRRDYKVEPNV--KHY-GCLVDLLCRARLLDEAYEVIRNM 393 (519)
Q Consensus 331 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~-~~l~~~~~~~~~~~~A~~~~~~~ 393 (519)
...++.+++.|...+.++.|..+..+..--....++. ..| ..+.+.+.-.+++.+|.+.+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3467888888888888888888888774200001111 222 24567777788888888877765
No 311
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=31.70 E-value=1.3e+02 Score=28.88 Aligned_cols=44 Identities=16% Similarity=0.068 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 048578 416 ANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMR 459 (519)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (519)
..++.|...|.++..+.|.+...|+.|+.+....|+.-+|.-.|
T Consensus 166 ~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y 209 (497)
T 1ya0_A 166 NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYY 209 (497)
T ss_dssp TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHH
Confidence 34566666666666666666666666666666666555544433
No 312
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=31.57 E-value=1.2e+02 Score=21.28 Aligned_cols=33 Identities=24% Similarity=0.230 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHcCccc
Q 048578 114 RGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQ 146 (519)
Q Consensus 114 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 146 (519)
.|.++.++....|+.|+..+..-++..|...+.
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l 59 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ 59 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 455666666667777777666666666654443
No 313
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=31.13 E-value=1.4e+02 Score=25.87 Aligned_cols=12 Identities=8% Similarity=0.252 Sum_probs=6.5
Q ss_pred CChHHHHHHHhc
Q 048578 79 SQIAYAHLVFNQ 90 (519)
Q Consensus 79 ~~~~~A~~~~~~ 90 (519)
|+.+-...+++.
T Consensus 42 g~~~~v~~Ll~~ 53 (285)
T 3kea_A 42 NNVRLVCTLLNA 53 (285)
T ss_dssp TCHHHHHHHHHT
T ss_pred CCHHHHHHHHhC
Confidence 555555555554
No 314
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.72 E-value=1.4e+02 Score=22.94 Aligned_cols=37 Identities=14% Similarity=0.222 Sum_probs=15.8
Q ss_pred CcHHHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCC
Q 048578 345 GLIEKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARL 382 (519)
Q Consensus 345 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 382 (519)
+..-.|.++++.+.+. +...+..|...-++.+...|-
T Consensus 40 ~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 40 GTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp SSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCc
Confidence 3334445555554442 223333444444444444443
No 315
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=30.48 E-value=20 Score=24.79 Aligned_cols=26 Identities=12% Similarity=0.037 Sum_probs=22.9
Q ss_pred CCChhHHHHHHHHHHHHHHhcccCCC
Q 048578 492 HPCSEEIYSMLEYVAISLREECYAAR 517 (519)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~p~ 517 (519)
.++..++...+++-...++..|+.||
T Consensus 12 rgdlirIl~~ieekinELk~dG~ePD 37 (103)
T 2pk8_A 12 RGDLIRILGEIEEKMNELKMDGFNPD 37 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCCC
Confidence 45678899999999999999999998
No 316
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=29.44 E-value=2.4e+02 Score=23.33 Aligned_cols=54 Identities=9% Similarity=0.294 Sum_probs=30.7
Q ss_pred HHHHHHHHHHcHHhcCCCCCh-hHHH-----HHHHHHHhcCChHHHHHHHHhC-CCCCCHH
Q 048578 347 IEKGKEIFYNMRRDYKVEPNV-KHYG-----CLVDLLCRARLLDEAYEVIRNM-PMEPNAV 400 (519)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~A~~~~~~~-~~~p~~~ 400 (519)
++.|+.+|+.+.+...++.+. .... ..+-.|.+.|.+++|.+++++. +-.|+..
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~ 148 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQ 148 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCch
Confidence 567777777777753332221 1111 2334567788888888888776 4333333
No 317
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=29.36 E-value=2e+02 Score=26.26 Aligned_cols=67 Identities=13% Similarity=0.188 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCch---hHHHHHHHHHHHcCC--hhHHHHHHHHHHhCCCCCCHHHH
Q 048578 167 LTRLITFYCNFGDVKSAQLLFDQMTEKNV---VTWTAMINGHVKQKN--YREGIDLFRKMRDSGVEVNELTL 233 (519)
Q Consensus 167 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~ 233 (519)
...++.=|...|+.++|.+.++++..|+. .....++......++ -+.+-.++..+...++-+.....
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~ 86 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFM 86 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 45677778888999999999999887752 222233333333333 24455667777766654433333
No 318
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=29.14 E-value=5.3e+02 Score=27.17 Aligned_cols=121 Identities=9% Similarity=-0.005 Sum_probs=71.7
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHhcc
Q 048578 170 LITFYCNFGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNE------LTLVSVLSACANL 243 (519)
Q Consensus 170 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~~~~~ll~~~~~~ 243 (519)
++..+...|..+-|.++...+.. ++..--.+..+|...|++++|..+|++.- .|+..+. .....++...
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~~~~~~ll~~~--- 890 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEKY--- 890 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGGHHHHHHHHHT---
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccchhhhhhccCcc---
Confidence 56667778888888776666655 44333467788999999999999998753 2332211 1111111110
Q ss_pred CChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC----CCCh----hhHHHHHHHHHHcC
Q 048578 244 GASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGYIEEALRVFKIVL----EKNV----CTWNSIIGGLAIHG 310 (519)
Q Consensus 244 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~----~~~~~l~~~~~~~g 310 (519)
+ ........|..++..+-+.+.++.+.++-+..+ ..|. ..|+.++.+.+..|
T Consensus 891 --------------e-~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 891 --------------H-HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp --------------T-TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred --------------c-ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0 011223467778888888888888777665442 2233 25666666665544
No 319
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=28.15 E-value=1.8e+02 Score=21.29 Aligned_cols=80 Identities=14% Similarity=0.069 Sum_probs=50.5
Q ss_pred ChHHHHHHHHhC-CCCCCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHH
Q 048578 382 LLDEAYEVIRNM-PMEPNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRR 460 (519)
Q Consensus 382 ~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 460 (519)
.+.+|+.-+++. ...+|......++..+.. -++.+.++.+..++.....+.++........+.|-.++. +.+.
T Consensus 3 ~~~~al~~L~e~~~~~~~~~~~dg~i~~fe~-----t~Elawk~~k~~l~~~g~~~~s~rd~~r~a~~~glI~~~-~~w~ 76 (119)
T 1wty_A 3 SLARAVERLKAALERPKDEFIRDSAIQRFEF-----TFELAWKTLKTFLELQGLEARSPRAAIRGAFQVGLLPED-PFWL 76 (119)
T ss_dssp CHHHHHHHHHHHHSSCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHTSSCCC-HHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCcH-HHHH
Confidence 345555555554 334566666677776655 367777777776654322577888888888888877666 4444
Q ss_pred HHH-hCCC
Q 048578 461 LMK-ERNI 467 (519)
Q Consensus 461 ~m~-~~~~ 467 (519)
.|. .+++
T Consensus 77 ~m~~~RN~ 84 (119)
T 1wty_A 77 EMLELRNL 84 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhH
Confidence 443 4444
No 320
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=27.67 E-value=1.1e+02 Score=23.90 Aligned_cols=61 Identities=11% Similarity=0.210 Sum_probs=31.8
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHcHHhc-CCCCChhHHHHHHHHHHhcCCh
Q 048578 322 MQMSGIKPDDVTLIAVLTACSHAGLIEKGKEIFYNMRRDY-KVEPNVKHYGCLVDLLCRARLL 383 (519)
Q Consensus 322 m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 383 (519)
+.+.|++++..- ..++..+...+..-.|.++++.+.+.. +...+..|...-++.+...|-+
T Consensus 24 L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 24 LRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 344565555432 333444555555566666666665520 2233445555556666666654
No 321
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=27.64 E-value=1.6e+02 Score=20.74 Aligned_cols=29 Identities=14% Similarity=0.349 Sum_probs=14.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 048578 315 AVKMFWQMQMSGIKPDDVTLIAVLTACSH 343 (519)
Q Consensus 315 a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 343 (519)
|.++.++...-|+.|+..+...++..|..
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~ 56 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQ 56 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 44444455555555555554444444433
No 322
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=26.99 E-value=1e+02 Score=23.08 Aligned_cols=46 Identities=17% Similarity=0.099 Sum_probs=31.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 048578 301 SIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAGL 346 (519)
Q Consensus 301 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 346 (519)
.++..+...+..-.|.++++.+.+.+...+..|..-.++.+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3455555666677788888888777666677776666666666553
No 323
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=26.56 E-value=2.5e+02 Score=22.44 Aligned_cols=77 Identities=17% Similarity=0.185 Sum_probs=0.0
Q ss_pred cCChHHHHHHHhcCCCCchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-----------------HHHHHHHHHH
Q 048578 177 FGDVKSAQLLFDQMTEKNVVTWTAMINGHVKQKNYREGIDLFRKMRDSGVEVN-----------------ELTLVSVLSA 239 (519)
Q Consensus 177 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----------------~~~~~~ll~~ 239 (519)
.|.+..++-++.....-...-|..| +|-+.+++.+|+..++.+....+.-| ...++.+...
T Consensus 46 ngEY~R~Lf~L~~lNT~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~l 123 (242)
T 3kae_A 46 NGEYTRALFHLHKLNTCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDL 123 (242)
T ss_dssp TTCHHHHHHHHHTCCBHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHH
T ss_pred cchHhHHHHHHHhcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHH
Q ss_pred HhccCChHHHHHHHHH
Q 048578 240 CANLGASELGKWVHEF 255 (519)
Q Consensus 240 ~~~~~~~~~a~~~~~~ 255 (519)
|.+.|+.++|...+..
T Consensus 124 ltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 124 CTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhcCHHHhhhHhhh
No 324
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=25.81 E-value=1e+02 Score=27.81 Aligned_cols=82 Identities=10% Similarity=-0.098 Sum_probs=37.4
Q ss_pred HHHHhcCChHHHHHHHHhC-C-----CC-CCHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 048578 375 DLLCRARLLDEAYEVIRNM-P-----ME-PNAVLWGSLLTACASADDGANVELAEIAMERLIKLEPFNDGNYVLMSNIYA 447 (519)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~-~-----~~-p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (519)
...+..|+.+-+..+++.. . +. .+......|. ..+. .|+.+-+..+++.-...+..+......| ....
T Consensus 178 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~-~A~~---~g~~~~v~~Ll~~gad~~~~d~~g~tpL-~~A~ 252 (364)
T 3ljn_A 178 MRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH-WAIL---INWEDVAMRFVEMGIDVNMEDNEHTVPL-YLSV 252 (364)
T ss_dssp HHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTH-HHHT---TTCHHHHHHHHTTTCCTTCCCTTSCCHH-HHHH
T ss_pred HHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHH-HHHH---cCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHH
Confidence 3345677777766666653 1 11 1111122222 3334 6677666555553222222232222233 2233
Q ss_pred hcCCchHHHHHHHH
Q 048578 448 AKAQWDDAGKMRRL 461 (519)
Q Consensus 448 ~~g~~~~A~~~~~~ 461 (519)
+.|+.+-+.-+++.
T Consensus 253 ~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 253 RAAMVLLTKELLQK 266 (364)
T ss_dssp HTCCHHHHHHHHHH
T ss_pred HhChHHHHHHHHHc
Confidence 45776655555554
No 325
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=25.49 E-value=2.8e+02 Score=22.68 Aligned_cols=48 Identities=15% Similarity=0.257 Sum_probs=32.9
Q ss_pred hHHHHHHHHH---hcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccc
Q 048578 98 AFNTVIRGYA---EAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQ 146 (519)
Q Consensus 98 ~~~~ll~~~~---~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 146 (519)
.+--+|+++. +..+++.|+-.+.+|.+.| .|.-..-..++-+.-..|.
T Consensus 13 ~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 13 AHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 3444666665 4689999999999999998 5555555555555544444
No 326
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=25.17 E-value=2e+02 Score=21.80 Aligned_cols=59 Identities=10% Similarity=0.101 Sum_probs=29.8
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCC
Q 048578 221 MRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGY 280 (519)
Q Consensus 221 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 280 (519)
+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 4455555544332 2333333344445566666666655544455555555555655554
No 327
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=24.51 E-value=1.2e+02 Score=18.28 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=20.5
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHH
Q 048578 381 RLLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAM 425 (519)
Q Consensus 381 ~~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~ 425 (519)
.++++.++.+..||+.+......+|.. . .|+++.|.+++
T Consensus 10 ~~~~~~l~~L~~MGF~~~~~~~~AL~~---t---~gn~e~A~e~L 48 (52)
T 2jy5_A 10 VRFQQQLEQLSAMGFLNREANLQALIA---T---GGDINAAIERL 48 (52)
T ss_dssp TTTHHHHHHHHHTTCCCHHHHHHHHHH---H---TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHH---h---CCCHHHHHHHH
Confidence 345666677777776443333222221 1 45677776654
No 328
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=24.43 E-value=2.9e+02 Score=22.56 Aligned_cols=37 Identities=8% Similarity=0.081 Sum_probs=25.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 048578 308 IHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAG 345 (519)
Q Consensus 308 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 345 (519)
+..+.+.|+-++-+|++.| .|....-..++.+....|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 4578888888888888888 666555555555554444
No 329
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=24.11 E-value=2.9e+02 Score=22.41 Aligned_cols=37 Identities=5% Similarity=-0.246 Sum_probs=20.0
Q ss_pred CChHHHHHHHhcCCCCCcc--hHHHHHHHHHhcCChhHH
Q 048578 79 SQIAYAHLVFNQIINPSTF--AFNTVIRGYAEAGLGHRG 115 (519)
Q Consensus 79 ~~~~~A~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~a 115 (519)
|+++....+++.-..++.. .-...+...++.|+.+-+
T Consensus 20 g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v 58 (240)
T 3eu9_A 20 GIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLV 58 (240)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred CChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHH
Confidence 7888887777765332221 112244555666765433
No 330
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=23.84 E-value=5e+02 Score=25.06 Aligned_cols=67 Identities=6% Similarity=-0.057 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHccccCCCCHHHH--------HHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048578 396 EPNAVLWGSLLTACASADDGANVELA--------EIAMERLIKLEPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNI 467 (519)
Q Consensus 396 ~p~~~~~~~ll~~~~~~~~~~~~~~a--------~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (519)
..|......+..-+.. .|-.++- ..++++ ..|++......|-..|.+.|++-+|-+++-.+-..+.
T Consensus 175 s~DelFH~~LYdWli~---~gl~d~LL~i~sPfle~yL~r---~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~~ 248 (525)
T 3i5p_A 175 YNDRLFHYHMYDWLVS---QNREEKLLDIETPFILPYLME---KAGSSLKISNILWVYYSRRSKFFESAEILYRLATSNF 248 (525)
T ss_dssp SCCHHHHHHHHHHHHH---TTCGGGGGGCCCTTHHHHHHH---TCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSSS
T ss_pred CChHHHHHHHHHHHHh---CCCcchhhcCCCchHHHHHHh---cCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCCC
Confidence 3455555555565666 4443332 223322 3466666777788888999999999999999988754
Q ss_pred c
Q 048578 468 V 468 (519)
Q Consensus 468 ~ 468 (519)
.
T Consensus 249 ~ 249 (525)
T 3i5p_A 249 D 249 (525)
T ss_dssp C
T ss_pred C
Confidence 3
No 331
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=23.79 E-value=3.7e+02 Score=23.55 Aligned_cols=17 Identities=6% Similarity=-0.009 Sum_probs=9.6
Q ss_pred HHHHhcCCHHHHHHHHh
Q 048578 273 DMYAKCGYIEEALRVFK 289 (519)
Q Consensus 273 ~~~~~~g~~~~a~~~~~ 289 (519)
...+..|..+.+..+++
T Consensus 244 ~~a~~~~~~~~v~~Ll~ 260 (337)
T 4g8k_A 244 ILAVEKKHLGLVQRLLE 260 (337)
T ss_dssp HHHHHTTCHHHHHHHHT
T ss_pred HHHHHhhhhHHHHHHHH
Confidence 34455666666655554
No 332
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=23.36 E-value=3.1e+02 Score=22.46 Aligned_cols=58 Identities=17% Similarity=0.124 Sum_probs=42.5
Q ss_pred cCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcch
Q 048578 208 QKNYREGIDLFRKMRDSGVEVN-ELTLVSVLSACANLGASELGKWVHEFVNKNCIILND 265 (519)
Q Consensus 208 ~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 265 (519)
.+....+..+|..|...|+--. ..-|......+...|++.+|..+|+.-.+.+-.|-.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 4446688889988888875443 445666777777888888888888888887766643
No 333
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=23.23 E-value=86 Score=21.80 Aligned_cols=26 Identities=12% Similarity=0.092 Sum_probs=19.4
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHH
Q 048578 438 NYVLMSNIYAAKAQWDDAGKMRRLMK 463 (519)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (519)
.+...++.+.+.|+|++|++..++..
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 45567788888899999988766553
No 334
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=23.16 E-value=1.9e+02 Score=19.92 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=27.3
Q ss_pred cCCHHHHHHHHhhcCCCChhhHHHHHHHHHHcCChH
Q 048578 278 CGYIEEALRVFKIVLEKNVCTWNSIIGGLAIHGCGE 313 (519)
Q Consensus 278 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 313 (519)
....++|..+++.+..++..+|..+..++...+...
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHH
Confidence 456778888888888888888888888887776543
No 335
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=22.89 E-value=2.6e+02 Score=21.41 Aligned_cols=61 Identities=10% Similarity=0.066 Sum_probs=39.2
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCC
Q 048578 219 RKMRDSGVEVNELTLVSVLSACANLG-ASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGY 280 (519)
Q Consensus 219 ~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 280 (519)
+.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 346667777766544 3445555555 566788888888887666666666556666666654
No 336
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=22.73 E-value=1.6e+02 Score=22.43 Aligned_cols=34 Identities=18% Similarity=0.184 Sum_probs=14.6
Q ss_pred HHHHHHHHHcHHhcCCCCChhHHHHHHHHHHhcCC
Q 048578 348 EKGKEIFYNMRRDYKVEPNVKHYGCLVDLLCRARL 382 (519)
Q Consensus 348 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 382 (519)
-.|.++++.+.+. +...+..|...-++.+...|-
T Consensus 34 ~ta~ei~~~l~~~-~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 34 ATPDDILGEVRKT-ASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp BCHHHHHHHHHTT-CTTCCHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHhh-CCCCCHhHHHHHHHHHHHCCc
Confidence 3445555555442 223334444444444444443
No 337
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.54 E-value=2.5e+02 Score=21.02 Aligned_cols=60 Identities=10% Similarity=0.054 Sum_probs=0.0
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcC
Q 048578 219 RKMRDSGVEVNELTLVSVLSACANLG-ASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCG 279 (519)
Q Consensus 219 ~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 279 (519)
+.+++.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-+..+.+.|
T Consensus 7 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 7 SELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
No 338
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.46 E-value=3.2e+02 Score=22.28 Aligned_cols=45 Identities=9% Similarity=0.128 Sum_probs=30.9
Q ss_pred HHHHHHH---HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 048578 200 AMINGHV---KQKNYREGIDLFRKMRDSGVEVNELTLVSVLSACANLG 244 (519)
Q Consensus 200 ~li~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 244 (519)
.+|+++. +..+++.|+-.+-+|++.|-.|.-..-..++-+...-|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 4455554 56889999999999999887766555555555554443
No 339
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.40 E-value=1.4e+02 Score=18.23 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=20.2
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHccccCCCCHHHHHHHHH
Q 048578 382 LLDEAYEVIRNMPMEPNAVLWGSLLTACASADDGANVELAEIAME 426 (519)
Q Consensus 382 ~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~ 426 (519)
++++.++.+..||+........+|.. . .|+++.|.+.+-
T Consensus 8 ~~~~~l~~L~~MGF~d~~~n~~AL~~---~---~Gdv~~Ave~L~ 46 (54)
T 2dah_A 8 HFQVQLEQLRSMGFLNREANLQALIA---T---GGDVDAAVEKLR 46 (54)
T ss_dssp SSHHHHHHHHHHTCCCHHHHHHHHHH---H---TSCHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHHHH---c---CCCHHHHHHHHH
Confidence 44556666666665433322333321 1 567777766554
No 340
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=22.08 E-value=3.4e+02 Score=22.49 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=17.9
Q ss_pred HHHHhccCcHHHHHHHHHHcHH
Q 048578 338 LTACSHAGLIEKGKEIFYNMRR 359 (519)
Q Consensus 338 ~~~~~~~g~~~~a~~~~~~~~~ 359 (519)
+-.|.+.|.+++|.++|++...
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHhcchHHHHHHHHHHhc
Confidence 3468888999999999988865
No 341
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=21.99 E-value=3.2e+02 Score=22.22 Aligned_cols=44 Identities=18% Similarity=0.199 Sum_probs=30.6
Q ss_pred HHHHHH---HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 048578 302 IIGGLA---IHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAG 345 (519)
Q Consensus 302 l~~~~~---~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 345 (519)
+|+++. +..+.+.|+-++-+|++.|-.|....-..++.+....|
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 444443 56789999999999999887776666666665544443
No 342
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=21.92 E-value=4.4e+02 Score=23.92 Aligned_cols=68 Identities=16% Similarity=0.079 Sum_probs=47.4
Q ss_pred HHHHHHHHHhh-----CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCCCh
Q 048578 421 AEIAMERLIKL-----EPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCS 495 (519)
Q Consensus 421 a~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (519)
+..+|.+++.. +-.....|..++..+.+.+++.+|++.+-+.-+ ++..+....++
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~--------------------Vi~~YNY~reD 335 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY--------------------VAGKYNYSKDD 335 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------HHTTSCCCGGG
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHH--------------------HHHHcCCCccH
Confidence 55666666542 233567888999999999999999999877643 12234445678
Q ss_pred hHHHHHHHHHHHH
Q 048578 496 EEIYSMLEYVAIS 508 (519)
Q Consensus 496 ~~~~~~~~~~~~~ 508 (519)
++|+..+-++...
T Consensus 336 eEIYKEf~eIAne 348 (472)
T 3re2_A 336 EEMYKEFHEIAND 348 (472)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 8888877776543
No 343
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=21.91 E-value=2.5e+02 Score=24.77 Aligned_cols=92 Identities=13% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCC---chhHHHHHHHHHHHcCCh--hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 048578 168 TRLITFYCNFGDVKSAQLLFDQMTEK---NVVTWTAMINGHVKQKNY--REGIDLFRKMRDSGVEVNELTLVSVLSACAN 242 (519)
Q Consensus 168 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 242 (519)
..++.=|...|+.++|.++++++..| .......+..++-+.++. +.+.+++..+.+.|+-+.......+...+..
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl~~ 249 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNE 249 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHh
Q ss_pred cC----ChHHHHHHHHHHHHc
Q 048578 243 LG----ASELGKWVHEFVNKN 259 (519)
Q Consensus 243 ~~----~~~~a~~~~~~~~~~ 259 (519)
.. |...|..++..+...
T Consensus 250 l~Dl~lDiP~A~~~la~~v~~ 270 (307)
T 2zu6_B 250 IPDINLDVPHSYSVLERFVEE 270 (307)
T ss_dssp HHHHHHHCTTHHHHHHHHHHH
T ss_pred ccHhhcccccHHHHHHHHHHH
No 344
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=21.86 E-value=92 Score=23.64 Aligned_cols=43 Identities=16% Similarity=0.044 Sum_probs=23.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 048578 303 IGGLAIHGCGEEAVKMFWQMQMSGIKPDDVTLIAVLTACSHAG 345 (519)
Q Consensus 303 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 345 (519)
+..+...++.-.|.++++.+.+.+...+..|..-.+..+...|
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3444444445556666666666555555555555555554444
No 345
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=21.73 E-value=2.9e+02 Score=24.76 Aligned_cols=25 Identities=12% Similarity=0.288 Sum_probs=20.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHH
Q 048578 198 WTAMINGHVKQKNYREGIDLFRKMR 222 (519)
Q Consensus 198 ~~~li~~~~~~~~~~~a~~~~~~m~ 222 (519)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4567778888888988888888774
No 346
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=21.28 E-value=4.4e+02 Score=24.48 Aligned_cols=68 Identities=13% Similarity=-0.021 Sum_probs=47.5
Q ss_pred HHHHHHHHHhh-----CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCCCh
Q 048578 421 AEIAMERLIKL-----EPFNDGNYVLMSNIYAAKAQWDDAGKMRRLMKERNIVKNPGCSVIEINDVVHEFMVGDGRHPCS 495 (519)
Q Consensus 421 a~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (519)
+..+|.+++.. +-....-|..++..|.+.+++.+|++.+-+.-+ ++..+....++
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~--------------------Vi~~YNY~reD 357 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT--------------------VIQDYNYCRED 357 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------HHTTSCCCGGG
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHH--------------------HHHHcCCCcch
Confidence 55556555532 233567888999999999999999999877643 12334456688
Q ss_pred hHHHHHHHHHHHH
Q 048578 496 EEIYSMLEYVAIS 508 (519)
Q Consensus 496 ~~~~~~~~~~~~~ 508 (519)
++||..+-++...
T Consensus 358 eEIYKEf~eIAne 370 (550)
T 3u84_A 358 EEIYKEFFEVAND 370 (550)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999888776543
No 347
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=21.16 E-value=1.4e+02 Score=17.54 Aligned_cols=11 Identities=27% Similarity=0.256 Sum_probs=6.2
Q ss_pred CCCHHHHHHHH
Q 048578 415 GANVELAEIAM 425 (519)
Q Consensus 415 ~~~~~~a~~~~ 425 (519)
.|+++.|.+.+
T Consensus 33 ~gnv~~Ave~L 43 (46)
T 2bwb_A 33 GGSVQGALDSL 43 (46)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 45666665543
No 348
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=20.99 E-value=2.7e+02 Score=21.86 Aligned_cols=84 Identities=6% Similarity=-0.039 Sum_probs=36.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHcCccchHHHHHHHHHhCCCCCchhH--HHHHHHHHHhcCCh
Q 048578 103 IRGYAEAGLGHRGIQLYTQMIGNGLDPDSFTYPILLKACGDLRQVKGVHSLVVKSKDFNSVIHS--LTRLITFYCNFGDV 180 (519)
Q Consensus 103 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~ 180 (519)
+...+..|+.+....++..-...--..|..-++.+..++ ..|+ .++.+.+.+.+ ..++... -.+.+...+..|+.
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~-~~~~-~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~ 85 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAV-HNND-IEIAKALIDRG-ADINLQNSISDSPYLYAGAQGRT 85 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHH-HHTC-HHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH-HcCC-HHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCH
Confidence 334456777776666654322110112222223333332 3333 34445555544 3332211 11233344556777
Q ss_pred HHHHHHHhc
Q 048578 181 KSAQLLFDQ 189 (519)
Q Consensus 181 ~~A~~~~~~ 189 (519)
+-+..+++.
T Consensus 86 ~~~~~Ll~~ 94 (201)
T 3hra_A 86 EILAYMLKH 94 (201)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 766666643
No 349
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=20.98 E-value=4.5e+02 Score=23.48 Aligned_cols=62 Identities=11% Similarity=0.116 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCch---hHHHHHHHHHHHcC-ChhHHHHHHHHHHhCCCCC
Q 048578 167 LTRLITFYCNFGDVKSAQLLFDQMTEKNV---VTWTAMINGHVKQK-NYREGIDLFRKMRDSGVEV 228 (519)
Q Consensus 167 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~ 228 (519)
...++.=|...|+.++|.+.++++..|.- .....+..++-+.. ..+.+.+++..+.+.|+-+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is 79 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLS 79 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCC
Confidence 45677778889999999999999987642 11222222222211 2345667777777666543
No 350
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=20.65 E-value=4.9e+02 Score=23.81 Aligned_cols=318 Identities=13% Similarity=0.097 Sum_probs=146.9
Q ss_pred HHHHHHHHHhcCCCCchh--HHHHHHHHHhhcCCCChHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChhHHHHHHHH
Q 048578 47 KQVHAQIIKASFDNRTIS--DTQLAKLIESLVNSSQIAYAHLVFNQIINPS---TFAFNTVIRGYAEAGLGHRGIQLYTQ 121 (519)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~ 121 (519)
..+++.+.+.|..++... ..+.+...+.. |+.+-+..+++.-...+ .... +.+...++.|+.+-+.-
T Consensus 27 ~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~g~~~~v~~---- 98 (437)
T 1n11_A 27 LPIVKNLLQRGASPNVSNVKVETPLHMAARA---GHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARIGHTNMVKL---- 98 (437)
T ss_dssp HHHHHHHHHTTCCSCCSSSCCCCHHHHHHHH---TCHHHHHHHHHHTCCSSCCCTTSC-CHHHHHHHHTCHHHHHH----
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc---CCHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHCCCHHHHHH----
Confidence 456677777787765432 12345555666 89888888887654322 2222 23445556777654433
Q ss_pred HHhCCCCCCcc---hHHHHHHHHcCccchHHHHHHHHHhCCCCCc--hhHHHHHHHHHHhcCChHHHHHHHhcCCCCchh
Q 048578 122 MIGNGLDPDSF---TYPILLKACGDLRQVKGVHSLVVKSKDFNSV--IHSLTRLITFYCNFGDVKSAQLLFDQMTEKNVV 196 (519)
Q Consensus 122 m~~~g~~p~~~---~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 196 (519)
+.+.|..|+.. ..+. +...+..|+.+-+...+ +.+ ..++ ...-.+.+...+..|+.+-+..+++.-..++..
T Consensus 99 Ll~~ga~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll-~~~-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~ 175 (437)
T 1n11_A 99 LLENNANPNLATTAGHTP-LHIAAREGHVETVLALL-EKE-ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA 175 (437)
T ss_dssp HHHHTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHH-HTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred HHhCCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHH-hCC-CCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC
Confidence 34445444332 1222 22333445544443333 333 2211 111123344566788888888777765433221
Q ss_pred --HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH---HHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhH--HH
Q 048578 197 --TWTAMINGHVKQKNYREGIDLFRKMRDSGVEVNEL---TLVSVLSACANLGASELGKWVHEFVNKNCIILNDKL--GA 269 (519)
Q Consensus 197 --~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~ 269 (519)
.-.+.+...+..|+.+- ++.+.+.|..++.. ..+ .+...+..|+.+.+..++ +.|..++... -.
T Consensus 176 ~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~ 246 (437)
T 1n11_A 176 GKNGLTPLHVAVHHNNLDI----VKLLLPRGGSPHSPAWNGYT-PLHIAAKQNQVEVARSLL----QYGGSANAESVQGV 246 (437)
T ss_dssp CSSCCCHHHHHHHTTCHHH----HHHHGGGTCCSCCCCTTCCC-HHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTCC
T ss_pred CCCCCCHHHHHHHcCCHHH----HHHHHhCCCCCCCcCCCCCC-HHHHHHHcCCHHHHHHHH----HcCCCCCCCCCCCC
Confidence 01122344456666543 34444555443321 122 233445567766555444 3343222110 11
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhc
Q 048578 270 ALTDMYAKCGYIEEALRVFKIVLEKN---VCTWNSIIGGLAIHGCGEEAVKMFWQMQMSGIKPDDV---TLIAVLTACSH 343 (519)
Q Consensus 270 ~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---~~~~l~~~~~~ 343 (519)
+.+...+..|+.+-+.-+++.-...+ ..-.+. +...++.|+.+-+. .+.+.|..++.. -.+.| ...+.
T Consensus 247 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~----~Ll~~g~~~~~~~~~g~t~L-~~A~~ 320 (437)
T 1n11_A 247 TPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTP-LHLVAQEGHVPVAD----VLIKHGVMVDATTRMGYTPL-HVASH 320 (437)
T ss_dssp CHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCH-HHHHHHHTCHHHHH----HHHHHTCCTTCCCSSCCCHH-HHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCH-HHHHHHcCCHHHHH----HHHhCCccCCCCCCCCCCHH-HHHHH
Confidence 23344556788777777766543322 122222 23334566655443 333444433321 12222 23344
Q ss_pred cCcHHHHHHHHHHcHHhcCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 048578 344 AGLIEKGKEIFYNMRRDYKVEPNV---KHYGCLVDLLCRARLLDEAYEVIRNMPMEP 397 (519)
Q Consensus 344 ~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~p 397 (519)
.|+.+-+..++ + .|..++. .-++. +...+..|+.+-+.-+++ .|..|
T Consensus 321 ~g~~~~v~~Ll----~-~gad~n~~~~~g~t~-L~~A~~~g~~~iv~~Ll~-~ga~~ 370 (437)
T 1n11_A 321 YGNIKLVKFLL----Q-HQADVNAKTKLGYSP-LHQAAQQGHTDIVTLLLK-NGASP 370 (437)
T ss_dssp SSCSHHHHHHH----H-TTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHH-TTCCS
T ss_pred cCcHHHHHHHH----h-cCCCCCCCCCCCCCH-HHHHHHCChHHHHHHHHH-CcCCC
Confidence 56655444433 3 2443332 11222 233345666655544444 44344
No 351
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=20.02 E-value=3e+02 Score=21.04 Aligned_cols=60 Identities=8% Similarity=0.046 Sum_probs=30.2
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCC
Q 048578 220 KMRDSGVEVNELTLVSVLSACANLGASELGKWVHEFVNKNCIILNDKLGAALTDMYAKCGY 280 (519)
Q Consensus 220 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 280 (519)
.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 17 ~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 17 SIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 34455555443322 3334444444455666666666665545555555555566666554
Done!