BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048582
         (555 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3FQD|A Chain A, Crystal Structure Of The S. Pombe Rat1-Rai1 Complex
          Length = 899

 Score = 29.3 bits (64), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 8/109 (7%)

Query: 79  LHSTVVMAGVEDQNEGLLSDPLNLNRSSSTPTTVQPAVQVQDQSNSTMEIDGLNISMSTT 138
           + + V+   VE Q+  +++       S ST    +P  + Q + ++   +D +N+S  T+
Sbjct: 428 VDNVVIQRSVETQSTEVVTS------SKSTSVDTKPPKKTQ-KIDAPAPVDLVNLSEKTS 480

Query: 139 NKTLGVAVAAATNETHAVPMKAERK-RAVTKLEKLEAGLQRARVAIKEA 186
           N++LG       N   A  +   R+  AV+ + KL A   +A++   E 
Sbjct: 481 NRSLGATNRELINNRAANRLGLSREAAAVSSVNKLAASALKAQLVSNET 529


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,728,163
Number of Sequences: 62578
Number of extensions: 568680
Number of successful extensions: 1086
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1086
Number of HSP's gapped (non-prelim): 2
length of query: 555
length of database: 14,973,337
effective HSP length: 104
effective length of query: 451
effective length of database: 8,465,225
effective search space: 3817816475
effective search space used: 3817816475
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)