Query 048582
Match_columns 555
No_of_seqs 277 out of 822
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 10:53:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048582.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048582hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1021 Acetylglucosaminyltran 100.0 7.9E-64 1.7E-68 543.2 24.7 344 203-547 97-461 (464)
2 PF03016 Exostosin: Exostosin 100.0 1E-53 2.2E-58 434.2 20.0 278 218-499 2-302 (302)
3 KOG2264 Exostosin EXT1L [Signa 100.0 2.7E-45 5.8E-50 388.1 22.2 354 153-537 114-522 (907)
4 KOG1022 Acetylglucosaminyltran 99.9 2.4E-23 5.2E-28 221.4 16.5 290 204-517 83-388 (691)
5 cd03801 GT1_YqgM_like This fam 97.3 0.0027 5.8E-08 62.9 11.6 103 415-521 258-363 (374)
6 cd03820 GT1_amsD_like This fam 97.2 0.0052 1.1E-07 60.9 12.3 95 425-521 244-340 (348)
7 PF00534 Glycos_transf_1: Glyc 96.9 0.0019 4.2E-08 59.8 6.6 95 414-512 74-170 (172)
8 PF00852 Glyco_transf_10: Glyc 96.9 0.0012 2.7E-08 70.2 5.6 148 351-505 137-303 (349)
9 cd03814 GT1_like_2 This family 96.6 0.0062 1.4E-07 61.5 8.1 94 425-521 258-353 (364)
10 cd03794 GT1_wbuB_like This fam 96.5 0.022 4.8E-07 57.3 11.3 94 425-521 286-387 (394)
11 cd03821 GT1_Bme6_like This fam 96.4 0.024 5.3E-07 56.9 10.8 129 387-521 234-367 (375)
12 PLN02871 UDP-sulfoquinovose:DA 96.4 0.018 3.8E-07 63.0 10.5 98 425-525 323-425 (465)
13 TIGR03088 stp2 sugar transfera 96.3 0.039 8.4E-07 57.6 12.2 128 387-522 229-361 (374)
14 cd03808 GT1_cap1E_like This fa 96.3 0.047 1E-06 54.3 12.1 95 424-521 254-351 (359)
15 cd03819 GT1_WavL_like This fam 96.2 0.053 1.2E-06 55.3 11.8 95 424-521 254-353 (355)
16 cd05844 GT1_like_7 Glycosyltra 96.2 0.053 1.2E-06 55.8 11.8 129 387-521 219-358 (367)
17 cd03822 GT1_ecORF704_like This 96.1 0.011 2.5E-07 59.8 6.6 93 425-521 259-355 (366)
18 cd03818 GT1_ExpC_like This fam 96.1 0.049 1.1E-06 57.9 11.5 118 400-521 266-388 (396)
19 cd04962 GT1_like_5 This family 96.1 0.022 4.7E-07 58.8 8.6 94 425-521 262-358 (371)
20 TIGR03449 mycothiol_MshA UDP-N 96.1 0.049 1.1E-06 57.6 11.3 131 388-522 253-390 (405)
21 cd03809 GT1_mtfB_like This fam 96.0 0.048 1E-06 55.2 10.7 93 425-522 264-358 (365)
22 cd03825 GT1_wcfI_like This fam 96.0 0.051 1.1E-06 55.5 10.7 92 426-520 257-351 (365)
23 cd03799 GT1_amsK_like This is 96.0 0.065 1.4E-06 54.5 11.2 103 415-521 238-349 (355)
24 cd03811 GT1_WabH_like This fam 96.0 0.097 2.1E-06 51.8 12.2 90 426-518 256-351 (353)
25 cd03817 GT1_UGDG_like This fam 95.9 0.095 2.1E-06 52.7 12.0 91 425-519 270-362 (374)
26 cd03823 GT1_ExpE7_like This fa 95.6 0.071 1.5E-06 53.5 9.6 88 425-515 254-344 (359)
27 PF13524 Glyco_trans_1_2: Glyc 95.5 0.043 9.4E-07 46.2 6.6 72 446-521 11-84 (92)
28 PRK15427 colanic acid biosynth 95.5 0.11 2.3E-06 56.2 11.2 128 388-521 254-393 (406)
29 PRK10307 putative glycosyl tra 95.5 0.075 1.6E-06 56.7 9.9 129 388-522 260-396 (412)
30 cd03800 GT1_Sucrose_synthase T 95.4 0.037 8E-07 57.5 7.2 94 425-521 294-390 (398)
31 PRK15484 lipopolysaccharide 1, 95.4 0.11 2.5E-06 55.3 10.9 95 425-522 268-366 (380)
32 cd04951 GT1_WbdM_like This fam 95.4 0.17 3.7E-06 51.5 11.8 92 425-521 254-348 (360)
33 cd03795 GT1_like_4 This family 95.3 0.13 2.9E-06 52.2 10.8 104 414-521 245-354 (357)
34 cd03807 GT1_WbnK_like This fam 95.3 0.049 1.1E-06 54.5 7.2 93 425-522 260-355 (365)
35 cd03805 GT1_ALG2_like This fam 95.2 0.15 3.3E-06 53.3 11.1 103 414-521 281-386 (392)
36 TIGR02149 glgA_Coryne glycogen 95.1 0.11 2.4E-06 54.2 9.5 95 425-522 272-375 (388)
37 PRK09814 beta-1,6-galactofuran 95.0 0.036 7.8E-07 58.1 5.5 89 425-519 218-317 (333)
38 cd03798 GT1_wlbH_like This fam 94.7 0.063 1.4E-06 53.5 6.1 94 425-521 270-364 (377)
39 cd03804 GT1_wbaZ_like This fam 94.6 0.14 2.9E-06 53.1 8.5 81 414-499 243-323 (351)
40 PRK09922 UDP-D-galactose:(gluc 94.0 0.23 5E-06 52.1 9.0 125 387-515 210-341 (359)
41 cd03806 GT1_ALG11_like This fa 94.0 0.4 8.7E-06 52.0 11.0 93 425-521 316-414 (419)
42 cd04955 GT1_like_6 This family 94.0 0.46 1E-05 48.5 10.8 128 387-522 221-353 (363)
43 KOG3088 Secretory carrier memb 93.4 0.22 4.8E-06 51.5 7.2 55 158-214 65-119 (313)
44 cd03812 GT1_CapH_like This fam 93.2 0.5 1.1E-05 48.3 9.6 104 387-499 223-328 (358)
45 PRK00654 glgA glycogen synthas 93.2 0.53 1.2E-05 51.7 10.4 91 427-522 350-451 (466)
46 cd03793 GT1_Glycogen_synthase_ 93.2 0.13 2.8E-06 58.4 5.5 110 424-534 465-588 (590)
47 cd03816 GT1_ALG1_like This fam 93.1 0.62 1.4E-05 50.3 10.6 120 387-515 269-399 (415)
48 cd04949 GT1_gtfA_like This fam 93.1 0.26 5.6E-06 51.3 7.5 93 426-521 271-366 (372)
49 cd03796 GT1_PIG-A_like This fa 93.1 0.53 1.2E-05 50.1 9.9 131 388-526 225-360 (398)
50 cd03792 GT1_Trehalose_phosphor 93.1 0.88 1.9E-05 47.8 11.4 104 414-522 253-360 (372)
51 TIGR02095 glgA glycogen/starch 93.1 0.49 1.1E-05 51.8 9.8 92 426-522 358-461 (473)
52 cd03802 GT1_AviGT4_like This f 92.7 0.29 6.4E-06 49.5 7.0 99 414-521 225-324 (335)
53 PRK14098 glycogen synthase; Pr 92.4 0.77 1.7E-05 51.2 10.4 94 426-524 374-476 (489)
54 TIGR02472 sucr_P_syn_N sucrose 92.2 0.35 7.7E-06 52.6 7.2 94 426-522 329-429 (439)
55 PRK14099 glycogen synthase; Pr 92.0 0.97 2.1E-05 50.3 10.5 95 426-524 361-469 (485)
56 cd03791 GT1_Glycogen_synthase_ 91.9 0.82 1.8E-05 49.8 9.7 92 426-522 363-465 (476)
57 TIGR03087 stp1 sugar transfera 91.8 0.66 1.4E-05 49.4 8.6 91 426-522 290-385 (397)
58 cd04946 GT1_AmsK_like This fam 91.7 1.4 2.9E-05 47.6 10.9 103 415-521 291-399 (407)
59 PHA01630 putative group 1 glyc 91.7 0.45 9.7E-06 50.3 7.1 95 425-522 201-319 (331)
60 PF13692 Glyco_trans_1_4: Glyc 91.2 0.16 3.5E-06 45.0 2.7 77 414-498 54-131 (135)
61 cd03813 GT1_like_3 This family 90.9 1.6 3.5E-05 48.0 10.8 95 424-521 361-464 (475)
62 PLN02949 transferase, transfer 90.7 0.73 1.6E-05 51.1 7.8 94 425-521 346-444 (463)
63 PHA01633 putative glycosyl tra 90.6 0.58 1.2E-05 49.9 6.6 93 426-521 216-327 (335)
64 KOG2619 Fucosyltransferase [Ca 90.4 1.6 3.4E-05 47.3 9.7 149 351-504 158-321 (372)
65 cd01635 Glycosyltransferase_GT 90.1 1.1 2.3E-05 42.0 7.3 78 387-466 135-213 (229)
66 PRK15490 Vi polysaccharide bio 88.5 3.2 6.9E-05 47.4 10.8 93 426-521 465-563 (578)
67 TIGR02468 sucrsPsyn_pln sucros 87.8 1.4 3.1E-05 53.4 7.8 92 428-522 562-659 (1050)
68 TIGR02470 sucr_synth sucrose s 87.3 1.7 3.6E-05 51.4 7.9 87 434-523 644-737 (784)
69 TIGR02918 accessory Sec system 86.7 2.3 4.9E-05 47.7 8.3 93 426-521 385-487 (500)
70 PLN02605 monogalactosyldiacylg 85.6 9 0.0002 40.8 11.9 79 426-514 275-362 (382)
71 cd03785 GT1_MurG MurG is an N- 84.9 5.7 0.00012 40.9 9.7 107 401-516 223-340 (350)
72 PRK13609 diacylglycerol glucos 84.8 4.6 9.9E-05 42.6 9.2 82 426-516 266-354 (380)
73 PRK13608 diacylglycerol glucos 83.4 5.2 0.00011 42.9 8.9 84 426-518 266-356 (391)
74 TIGR00236 wecB UDP-N-acetylglu 81.5 11 0.00023 39.7 10.3 127 390-537 233-361 (365)
75 PLN02939 transferase, transfer 81.3 4.9 0.00011 48.4 8.3 95 428-526 851-959 (977)
76 TIGR01133 murG undecaprenyldip 81.3 3 6.4E-05 43.0 5.9 83 426-513 243-334 (348)
77 PLN00142 sucrose synthase 80.9 4.4 9.6E-05 48.1 7.7 91 429-522 661-759 (815)
78 PRK00726 murG undecaprenyldiph 80.9 1.6 3.4E-05 45.6 3.7 88 425-517 244-341 (357)
79 PRK10125 putative glycosyl tra 78.3 8 0.00017 42.0 8.2 66 426-495 299-364 (405)
80 PRK15179 Vi polysaccharide bio 77.8 13 0.00028 43.6 10.2 92 426-522 584-682 (694)
81 KOG1387 Glycosyltransferase [C 77.5 16 0.00035 39.5 9.8 130 388-519 306-444 (465)
82 cd04950 GT1_like_1 Glycosyltra 76.0 3.2 7E-05 44.0 4.4 67 425-498 265-336 (373)
83 KOG3088 Secretory carrier memb 74.5 3.1 6.6E-05 43.4 3.5 51 151-204 65-115 (313)
84 PRK00025 lpxB lipid-A-disaccha 73.8 16 0.00034 38.4 8.8 86 426-518 254-359 (380)
85 PLN02316 synthase/transferase 71.7 6.6 0.00014 47.9 5.9 97 429-527 915-1027(1036)
86 PRK05749 3-deoxy-D-manno-octul 70.8 5.1 0.00011 43.1 4.4 100 426-537 312-417 (425)
87 PLN02275 transferase, transfer 68.9 24 0.00052 37.4 8.9 101 387-495 261-366 (371)
88 COG0438 RfaG Glycosyltransfera 66.6 14 0.0003 35.7 6.0 93 426-521 269-364 (381)
89 cd03788 GT1_TPS Trehalose-6-Ph 60.9 12 0.00025 41.5 4.8 91 424-519 351-447 (460)
90 PF13528 Glyco_trans_1_3: Glyc 60.1 19 0.00041 36.8 6.0 70 425-500 242-318 (318)
91 TIGR02400 trehalose_OtsA alpha 58.2 29 0.00064 38.5 7.4 88 424-517 346-440 (456)
92 smart00672 CAP10 Putative lipo 54.4 1.2E+02 0.0025 31.3 10.5 130 384-517 81-231 (256)
93 PLN02846 digalactosyldiacylgly 54.2 66 0.0014 36.0 9.3 39 428-467 295-333 (462)
94 TIGR03590 PseG pseudaminic aci 47.0 54 0.0012 33.7 6.8 33 426-464 234-266 (279)
95 PF00919 UPF0004: Uncharacteri 38.1 33 0.00072 30.1 3.1 42 222-273 1-43 (98)
96 PRK10718 RpoE-regulated lipopr 34.0 52 0.0011 32.6 4.0 35 11-52 2-36 (191)
97 PF15582 Imm40: Immunity prote 33.9 41 0.00088 35.0 3.4 62 426-509 261-323 (327)
98 PLN02501 digalactosyldiacylgly 32.4 1.2E+02 0.0026 36.1 7.2 38 428-466 613-650 (794)
99 cd03786 GT1_UDP-GlcNAc_2-Epime 30.2 2.1E+02 0.0045 29.6 8.1 36 426-467 270-305 (363)
100 PLN03063 alpha,alpha-trehalose 27.4 1.8E+02 0.004 34.8 7.9 88 425-517 367-461 (797)
101 TIGR00215 lpxB lipid-A-disacch 27.1 1.1E+02 0.0023 33.0 5.4 87 426-518 260-369 (385)
102 PRK14762 membrane protein; Pro 24.7 30 0.00065 23.3 0.4 21 13-33 1-21 (27)
103 PRK10175 lipoprotein; Provisio 23.1 42 0.0009 28.4 1.0 23 13-35 1-23 (75)
104 PF15024 Glyco_transf_18: Glyc 22.3 1.8E+02 0.0038 33.5 6.1 44 424-470 332-375 (559)
105 PRK15396 murein lipoprotein; P 21.3 1.5E+02 0.0032 25.3 4.0 42 145-186 17-58 (78)
106 PF07334 IFP_35_N: Interferon- 20.9 1.1E+02 0.0025 25.9 3.2 28 155-182 2-29 (76)
107 PF11471 Sugarporin_N: Maltopo 20.3 1.2E+02 0.0026 24.5 3.1 31 156-186 28-58 (60)
108 PF09574 DUF2374: Protein of 20.2 36 0.00079 25.5 0.1 13 19-31 16-28 (42)
109 COG0707 MurG UDP-N-acetylgluco 20.0 4E+02 0.0086 28.8 8.0 83 426-516 245-340 (357)
No 1
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=100.00 E-value=7.9e-64 Score=543.21 Aligned_cols=344 Identities=41% Similarity=0.676 Sum_probs=297.2
Q ss_pred CCCChhHhhHHHHHhhCCccceeecCCCCCCcCCC--CCCccccchhHHHHHHh-hcCccCCCCcCCCceEEEecccchh
Q 048582 203 MYWDSKAFHRSYLEMEQKFKVFVYEEGEPPVFHDG--PCKSIYSMEGNFIYTME-VNKQFRTKEADKAHVFFLPFSVVKL 279 (555)
Q Consensus 203 iy~~~~~F~~Sy~~m~~~fkVYVY~~g~~p~~~~g--p~~~~Y~~E~~f~~~~~-~~S~~rT~DPeeA~lFfVP~s~~~l 279 (555)
.+++...|..+|..|++.+|||+|.+|..+.+|.+ .++++|+.|++|+..++ ..++|||.||++||+||||||+++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~E~~~~~~~~~~~~~~Rt~dp~~Ad~f~vPf~~~~~ 176 (464)
T KOG1021|consen 97 TSPNNKKFMCSYKLNEKRGKVYVYHEGNKPLFHTPSWCLTDQYASEGIFHNRMLRRESAFRTLDPLEADAFYVPFYASLD 176 (464)
T ss_pred ccCcchhhhhhhhhhcccCceEEecCCCCccccCCCcccccchhHHHHHHHHHhcccCceecCChhhCcEEEEcceeeEe
Confidence 57888889999999999999999999987888776 67899999999888887 5779999999999999999999996
Q ss_pred h-hhhccCCCCCCchhhhhHHHHHHHHhhcCccccccCCCCeEEEeccCCCCCCccccccccccceEEEec-CCCCcccc
Q 048582 280 V-RFVYVRDSHDFGPIRRTVIDYVNLIAGKYPYWNRSLGADHFMLACHDWGPETSFSVPYLGKNSIRVLCN-ANTSEKFS 357 (555)
Q Consensus 280 ~-~~~y~~~~~d~~~l~~~v~~yv~~i~~~~PyWnRs~GrDHflv~~hDwGp~~~~~~p~l~~nsir~l~~-a~~s~~Fr 357 (555)
. ++++.++......+++.+.+||..++++||||||++|+||||++||+|+............+.|+.+|+ ++.+..|.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~W~Rs~G~DH~~v~~~~~~~~~~~~~~~~~~~~i~~~~n~a~ls~~~~ 256 (464)
T KOG1021|consen 177 YNRALLWPDERVNAILRSILQDYIVALLSKQPYWNRSSGRDHFFVACHDWGDFRRRSDWGASISLIPEFCNGALLSLEFF 256 (464)
T ss_pred hhhhcccCCcccchHHHHHHHHHHHHHHhcCchhhccCCCceEEEeCCcchheeeccchhhHHHHHHhhCCcceeecccc
Confidence 5 776766544444556788889988899999999999999999999999987654344445667888888 66788899
Q ss_pred CC-CCccCCccccCCCCCc---CcCCCCCCCCCcEEEEEecc-CCCCchhHHHHhhhcCCCCeEEeeecC-------Ccc
Q 048582 358 PV-KDVSFPEINLQTGGLT---GLIGGPSPSRRSILAFFAGG-VHGPIRPVLLEHWENKDEDIRVHKYLP-------KGV 425 (555)
Q Consensus 358 pg-kDVsIP~~~~~~~~~~---~~~~~~~p~~R~~L~fFaG~-~~g~iR~~Ll~~~~~~d~dv~v~~~~p-------~~~ 425 (555)
+. +|++||++....+... .++++....+|++|+||+|+ .+|.+|+.|+++|++ +++...+..++ +..
T Consensus 257 ~~~~dv~iP~~~~~~~~~~~~~~~~~~~~~~~R~~L~~F~G~~~~~~iR~~L~~~~~~-~~~~~~~~~~~~g~~~~~~~~ 335 (464)
T KOG1021|consen 257 PWNKDVAIPYPTIPHPLSPPENSWQGGVPFSNRPILAFFAGAPAGGQIRSILLDLWKK-DPDTEVFVNCPRGKVSCDRPL 335 (464)
T ss_pred cCCCcccCCCccCcCccCccccccccCCCCCCCceEEEEeccccCCcHHHHHHHHhhc-CcCccccccCCCCccccCCcc
Confidence 99 9999999754332111 46667777899999999999 999999999999998 44432222222 236
Q ss_pred cHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhH-HHHHhcCCHHHH
Q 048582 426 SYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNL-KSILTSISPRQY 504 (555)
Q Consensus 426 ~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L-~~iL~sIs~~~i 504 (555)
.|.+.|++|+|||||+|++++|+|+||||.+|||||||+|++.+||++++||++|||+|++++++++ +++|.+|+.+++
T Consensus 336 ~y~~~m~~S~FCL~p~Gd~~ts~R~fdai~~gCvPViisd~~~lpf~~~~d~~~fSV~v~~~~v~~~~~~iL~~i~~~~~ 415 (464)
T KOG1021|consen 336 NYMEGMQDSKFCLCPPGDTPTSPRLFDAIVSGCVPVIISDGIQLPFGDVLDWTEFSVFVPEKDVPELIKNILLSIPEEEV 415 (464)
T ss_pred hHHHHhhcCeEEECCCCCCcccHhHHHHHHhCCccEEEcCCcccCcCCCccceEEEEEEEHHHhhhHHHHHHHhcCHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHH-HHhhhccccC--CCCCccHHHHHHHHHHHhhhhcccc
Q 048582 505 IRMHRRVV-QVRRHFEFNS--PPKRFDVFHMILHSIWLRRLNVRIQ 547 (555)
Q Consensus 505 ~~Mrr~l~-~v~~hf~y~~--p~~~~DaF~mil~~lwlrRl~~r~~ 547 (555)
.+||+++. .+.+||.++. +++++|||||+++++|+|+++.|..
T Consensus 416 ~~m~~~v~~~v~r~~~~~~~~~~~~~da~~~~~~~v~~r~~~~~~~ 461 (464)
T KOG1021|consen 416 LRMRENVIRLVPRHFLKKPPGPPKRGDAFHMILHSLWRRLHKLRSR 461 (464)
T ss_pred HHHHHHHHHHHHhhEEeCCCCCCCcchhHHHHHhhhhhcccccccc
Confidence 99999999 5999999998 8899999999999999999988743
No 2
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=100.00 E-value=1e-53 Score=434.18 Aligned_cols=278 Identities=35% Similarity=0.578 Sum_probs=212.9
Q ss_pred hCCccceeecCCCC--------CC--cCCCCCCccccchhHHHHHHhhcCccCCCCcCCCceEEEecccchhhhhhccCC
Q 048582 218 EQKFKVFVYEEGEP--------PV--FHDGPCKSIYSMEGNFIYTMEVNKQFRTKEADKAHVFFLPFSVVKLVRFVYVRD 287 (555)
Q Consensus 218 ~~~fkVYVY~~g~~--------p~--~~~gp~~~~Y~~E~~f~~~~~~~S~~rT~DPeeA~lFfVP~s~~~l~~~~y~~~ 287 (555)
|++||||||+.... .. .........|+.|.+ +++.+.+|+++|.||+|||+||||++..+..+.....+
T Consensus 2 ~~~lkVYVY~lp~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-l~~~l~~s~~~T~dp~eAdlF~vP~~~~~~~~~~~~~~ 80 (302)
T PF03016_consen 2 HRGLKVYVYPLPPKFNKDLLDPREDEQCSWYETSQYALEVI-LHEALLNSPFRTDDPEEADLFFVPFYSSCYFHHWWGSP 80 (302)
T ss_pred CCCCEEEEEeCCccccccceeccccccCCCcccccchHHHH-HHHHHHhCCcEeCCHHHCeEEEEEcccccccccccCCc
Confidence 67999999998611 11 112223567888885 56666788999999999999999999887531111111
Q ss_pred CCCCchhhhhHHHHHHHHhhcCccccccCCCCeEEEeccCCCCCCccccccccccceEEEecC-C-CCccccCCCCccCC
Q 048582 288 SHDFGPIRRTVIDYVNLIAGKYPYWNRSLGADHFMLACHDWGPETSFSVPYLGKNSIRVLCNA-N-TSEKFSPVKDVSFP 365 (555)
Q Consensus 288 ~~d~~~l~~~v~~yv~~i~~~~PyWnRs~GrDHflv~~hDwGp~~~~~~p~l~~nsir~l~~a-~-~s~~FrpgkDVsIP 365 (555)
..........+++..+++++|||||++|+||||+++||||.+.....+.+..+.+.+++.. . ...+|+|++||++|
T Consensus 81 --~~~~~~~~~~~~~~~~~~~~p~w~r~~G~dH~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~P 158 (302)
T PF03016_consen 81 --NSGADRDSLSDALRHLLASYPYWNRSGGRDHFFVNSHDRGGCSFDRNPRLMNNSIRAVVAFSSFSSSCFRPGFDIVIP 158 (302)
T ss_pred --cchhhHHHHHHHHHHHHhcCchhhccCCCCeEEEeccccccccccccHhhhccchhheeccCCCCcCcccCCCCeecc
Confidence 1112235556677778899999999999999999999988876555566677777777432 2 46789999999999
Q ss_pred ccccCCC-CCcCcCCCCCCCCCcEEEEEeccCC-------CCchhHHHHhhhcCCCCeEEe---eecCCcccHHHhcccc
Q 048582 366 EINLQTG-GLTGLIGGPSPSRRSILAFFAGGVH-------GPIRPVLLEHWENKDEDIRVH---KYLPKGVSYYEMMRKS 434 (555)
Q Consensus 366 ~~~~~~~-~~~~~~~~~~p~~R~~L~fFaG~~~-------g~iR~~Ll~~~~~~d~dv~v~---~~~p~~~~y~~~l~~S 434 (555)
.+..... ..........+.+|++|++|+|+.. +.+|..|++.|++. ++..+. +......+|.+.|++|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~R~~l~~f~g~~~~~~~~~~~~~r~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~S 237 (302)
T PF03016_consen 159 PFVPPSSLPDWRPWPQRPPARRPYLLFFAGTIRPSSNDYSGGVRQRLLDECKSD-PDFRCSDGSETCPSPSEYMELLRNS 237 (302)
T ss_pred ccccccccCCccccccCCccCCceEEEEeeeccccccccchhhhhHHHHhcccC-CcceeeecccccccchHHHHhcccC
Confidence 8754432 1111112345789999999999864 36899999999764 333322 1223455799999999
Q ss_pred cEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhHHHHHhcC
Q 048582 435 KYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSILTSI 499 (555)
Q Consensus 435 ~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~sI 499 (555)
||||||+|+++++.||+|||.+|||||||+|++.|||+++|||++|+|+|+++++++|++||++|
T Consensus 238 ~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~v~~~~~~~l~~iL~~i 302 (302)
T PF03016_consen 238 KFCLCPRGDGPWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVRVPEADLPELPEILRSI 302 (302)
T ss_pred eEEEECCCCCcccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEEECHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999987
No 3
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-45 Score=388.14 Aligned_cols=354 Identities=18% Similarity=0.271 Sum_probs=259.8
Q ss_pred cccchhhHHhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCC-------CCCCCC----CC---CCCChhHhhHHHHHhh
Q 048582 153 THAVPMKAERKRAVTKLEKLEAGLQRARVAIKEASIGNQTQD-------PDFVPL----GP---MYWDSKAFHRSYLEME 218 (555)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~~l~~~l~~A~~~i~ea~~~~~~~~-------~~~lp~----~~---iy~~~~~F~~Sy~~m~ 218 (555)
.-++++|++++++|+||++||.+++|||++++|++++|+|+. |.-+|. .. -....+|||+|+|+++
T Consensus 114 ~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl~LP~sllP~~~pr~l~pp~~~~~c~lhncfdySRCslt 193 (907)
T KOG2264|consen 114 TKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNPKLFLPFSLLPLQIPRELEPPSQISPCQLHNCFDYSRCSLT 193 (907)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeccccCcccCcccCCCccccCcccchhcccccccccc
Confidence 358899999999999999999999999999999999987752 111111 11 2344589999999999
Q ss_pred CCccceeecCCCCCCcCCCCCCccccchhH---HHHHHhhcCccCCCCcCCCceEEEecccchhhhhhccCCCCCCchhh
Q 048582 219 QKFKVFVYEEGEPPVFHDGPCKSIYSMEGN---FIYTMEVNKQFRTKEADKAHVFFLPFSVVKLVRFVYVRDSHDFGPIR 295 (555)
Q Consensus 219 ~~fkVYVY~~g~~p~~~~gp~~~~Y~~E~~---f~~~~~~~S~~rT~DPeeA~lFfVP~s~~~l~~~~y~~~~~d~~~l~ 295 (555)
++|+||||+.+... .| |+.+++ .+++.+.+.-|.|+||+.||++++.+..- .+ +- -..|.
T Consensus 194 SgfPVYvyd~D~~~---~G-----~~~d~~lk~~fq~t~~~n~~~ve~pd~ACiyi~lvge~--q~----P~--~l~p~- 256 (907)
T KOG2264|consen 194 SGFPVYVYDSDIIT---SG-----QSEDEWLKQVFQETIPNNVYLVETPDKACIYIHLVGEI--QS----PV--VLTPA- 256 (907)
T ss_pred CCceeEEeccceee---cc-----cchHHHHHHHHHHhcccceeEeeCCCccEEEEEEeccc--cC----CC--cCChH-
Confidence 99999999975432 22 555554 44555566679999999999999876531 11 10 01111
Q ss_pred hhHHHHHHHHhhcCccccccCCCCeEEEeccCCCCCCccccccccccceEEEecCCC--CccccCCCCccCCccc-cCCC
Q 048582 296 RTVIDYVNLIAGKYPYWNRSLGADHFMLACHDWGPETSFSVPYLGKNSIRVLCNANT--SEKFSPVKDVSFPEIN-LQTG 372 (555)
Q Consensus 296 ~~v~~yv~~i~~~~PyWnRs~GrDHflv~~hDwGp~~~~~~p~l~~nsir~l~~a~~--s~~FrpgkDVsIP~~~-~~~~ 372 (555)
+ +++ +-++||| |++|+||++++... ...+.++....+++|+++.+.+ ..+||||+|+.+|++. +..+
T Consensus 257 ----e-lek-lyslp~w-~~dg~Nhvl~Nl~r---~s~~~n~lyn~~t~raivvQssf~~~q~RpgfDl~V~pv~h~~~e 326 (907)
T KOG2264|consen 257 ----E-LEK-LYSLPHW-RTDGFNHVLFNLGR---PSDTQNLLYNFQTGRAIVVQSSFYTVQIRPGFDLPVDPVNHIAVE 326 (907)
T ss_pred ----h-hhh-hhcCccc-cCCCcceEEEEccC---ccccccceeEeccCceEEEeecceeeeeccCCCcccCcccccccC
Confidence 1 233 3688999 79999999999763 2223455556678888877654 5689999999998754 3334
Q ss_pred CCcCcCCCCCCCCCcEEEEEeccCCC------CchhHHHHhhhcC------CCCeEEeeec-----------C------C
Q 048582 373 GLTGLIGGPSPSRRSILAFFAGGVHG------PIRPVLLEHWENK------DEDIRVHKYL-----------P------K 423 (555)
Q Consensus 373 ~~~~~~~~~~p~~R~~L~fFaG~~~g------~iR~~Ll~~~~~~------d~dv~v~~~~-----------p------~ 423 (555)
+....+....|.+|+||+.|+|.+.. ..+....++..+. |.-+...+|. | .
T Consensus 327 ~~~~e~~p~vP~~RkyL~t~qgki~~~~ssLn~~~aF~~e~~adp~~~a~qds~i~qv~c~~t~k~Qe~~SLpewalcg~ 406 (907)
T KOG2264|consen 327 KNFVELTPLVPFQRKYLITLQGKIESDNSSLNEFSAFSEELSADPSRRAVQDSPIVQVKCSFTCKNQENCSLPEWALCGE 406 (907)
T ss_pred ccceecCcccchhhheeEEEEeeecccccccchhhhhHHHhccCCcccccccCceEEEEEeeccccCCCCCcchhhhccc
Confidence 44333445678999999999997653 2333333332221 1111111111 1 1
Q ss_pred cccHHHhcccccEEe-ecCCCC-CCC----ccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhHHHHHh
Q 048582 424 GVSYYEMMRKSKYCL-CPSGYE-VAS----PRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSILT 497 (555)
Q Consensus 424 ~~~y~~~l~~S~FCL-~P~G~~-~~s----~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~ 497 (555)
..+..++++.|+||| .|+|+. +.| .|++||+..||||||+++...|||+|.|||++.++++|.+++++++++|+
T Consensus 407 ~~~RrqLlk~STF~lilpp~d~rv~S~~~~~r~~eaL~~GavPviLg~~~~LPyqd~idWrraal~lPkaR~tE~HFllr 486 (907)
T KOG2264|consen 407 RERRRQLLKSSTFCLILPPGDPRVISEMFFQRFLEALQLGAVPVILGNSQLLPYQDLIDWRRAALRLPKARLTEAHFLLR 486 (907)
T ss_pred hHHHHHHhccceeEEEecCCCcchhhHHHHHHHHHHHhcCCeeEEeccccccchHHHHHHHHHhhhCCccccchHHHHHH
Confidence 236789999999999 588886 333 89999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHhhhccccCCCCCccHHHHHHHHH
Q 048582 498 SISPRQYIRMHRRVVQVRRHFEFNSPPKRFDVFHMILHSI 537 (555)
Q Consensus 498 sIs~~~i~~Mrr~l~~v~~hf~y~~p~~~~DaF~mil~~l 537 (555)
++.+.++++|||+++.+|+.|+-. +.-.|+.++..|
T Consensus 487 s~~dsDll~mRRqGRl~wEtYls~----~~~~~~tvlA~l 522 (907)
T KOG2264|consen 487 SFEDSDLLEMRRQGRLFWETYLSD----RHLLARTVLAAL 522 (907)
T ss_pred hcchhhHHHHHhhhhhhHHHHhhH----HHHHHHHHHHHH
Confidence 999999999999999999997632 233566677776
No 4
>KOG1022 consensus Acetylglucosaminyltransferase EXT2/exostosin 2 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.90 E-value=2.4e-23 Score=221.42 Aligned_cols=290 Identities=18% Similarity=0.116 Sum_probs=211.7
Q ss_pred CCChhHhhHHHHHhhCCccceeecCCCCCCcCCCCCCccccchhHHHHHHhhcCccCCCCcCCCceEEEecccchhhhhh
Q 048582 204 YWDSKAFHRSYLEMEQKFKVFVYEEGEPPVFHDGPCKSIYSMEGNFIYTMEVNKQFRTKEADKAHVFFLPFSVVKLVRFV 283 (555)
Q Consensus 204 y~~~~~F~~Sy~~m~~~fkVYVY~~g~~p~~~~gp~~~~Y~~E~~f~~~~~~~S~~rT~DPeeA~lFfVP~s~~~l~~~~ 283 (555)
.....||+.-.| .-.+.|||+|..++..+..........+.|+.-+.+....|.|+|.|+++||+|. | +...++|..
T Consensus 83 c~~~dcf~~y~c-~~~~~KvyIy~l~~~vd~~s~~~~~T~s~ey~~lleA~~~S~yyt~n~N~aclf~-P-s~d~lnQn~ 159 (691)
T KOG1022|consen 83 CFLADCFLYYQC-LFFETKVYIYMLGDIVDAKSIDKGATWSPEYIALLEAWHLSFYYTFNYNGACLFM-P-SSDELNQNP 159 (691)
T ss_pred ceehhhhhhhhc-cccccceeEEehhhhhhhhcccccccccHHHHHHHHHHHhccceecCCCceEEEe-c-chhhhccCc
Confidence 345688999999 3467999999998765443333445688899888888888999999999999998 6 555555432
Q ss_pred ccCCCCCCchhhhhHHHHHHHHhhcCccccccCCCCeEEEeccCCCCCCccccccccccceEEEecC--CCCccccCCCC
Q 048582 284 YVRDSHDFGPIRRTVIDYVNLIAGKYPYWNRSLGADHFMLACHDWGPETSFSVPYLGKNSIRVLCNA--NTSEKFSPVKD 361 (555)
Q Consensus 284 y~~~~~d~~~l~~~v~~yv~~i~~~~PyWnRs~GrDHflv~~hDwGp~~~~~~p~l~~nsir~l~~a--~~s~~FrpgkD 361 (555)
++.. +-..+.+++-.|.| |.||.+++.-.-|+.. .+..+..+.-++...+ ..++.||+|+|
T Consensus 160 ----------l~~k---l~~~ala~l~~wdr--g~nH~~fnmLpGg~p~--yntaldv~~d~a~~~gggf~tW~yr~g~d 222 (691)
T KOG1022|consen 160 ----------LSWK---LEKVALAKLLVWDR--GVNHEGFNMLPGGDPT--YNTALDVGQDEAWYSGGGFGTWKYRKGND 222 (691)
T ss_pred ----------chHH---HHHHHHhcccchhc--ccceeeEeeccCCCCC--ccccccCCcceeEEecCCcCcccccCCCc
Confidence 2211 12234578889999 9999999987655543 2333444444444443 35678999999
Q ss_pred ccCCccccCCCCCcCcCCCCCCCCCcEEEEEec-cCCCCchhHHHHhhhcCCCCeEEe-ee----------c--CCcccH
Q 048582 362 VSFPEINLQTGGLTGLIGGPSPSRRSILAFFAG-GVHGPIRPVLLEHWENKDEDIRVH-KY----------L--PKGVSY 427 (555)
Q Consensus 362 VsIP~~~~~~~~~~~~~~~~~p~~R~~L~fFaG-~~~g~iR~~Ll~~~~~~d~dv~v~-~~----------~--p~~~~y 427 (555)
|.||...+..... . ..-+..|.+++--.| +.+..+|..|++...+..+..... .| + +...+|
T Consensus 223 v~ipv~Sp~~v~~--~--~~~~g~r~~~l~~~q~n~~pr~r~~l~el~~kh~e~~l~l~~c~nlsl~~r~~~qhH~~~~y 298 (691)
T KOG1022|consen 223 VYIPVRSPGNVGR--A--FLYDGSRYRVLQDCQENYGPRIRVSLIELLSKHEERELELPFCLNLSLNSRGVRQHHFDVKY 298 (691)
T ss_pred cccccccccccCc--c--ccCCccceeeeeccccccchHhHHhHHHHHhhccceEEecchhccccccccchhhccccccc
Confidence 9999876642111 1 123456666655554 456678877766543332211111 11 0 123579
Q ss_pred HHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhHHHHHhcCCHHHHHHH
Q 048582 428 YEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSILTSISPRQYIRM 507 (555)
Q Consensus 428 ~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~sIs~~~i~~M 507 (555)
...+...+||+.-+|.+-+.+-+++-+++||+|||..|.|++||.+|+||...||.++|..+..+...|++|+...+-+|
T Consensus 299 p~~l~~~~fc~~~R~~r~gq~~lv~~~~a~c~pvi~vd~y~lpf~~Vvdw~~aSv~~~e~~~~~v~~~l~~i~~~~i~sl 378 (691)
T KOG1022|consen 299 PSSLEFIGFCDGDRVTRGGQFHLVILGYASCAPVISVDIYLLPFLGVVDWIVASVWCMEYYAGKVMDALLNIETAGICSL 378 (691)
T ss_pred ccccceeeeEeccccccCCccceehhhhcccceeeeeehhhhhhhhhhhceeeeEEeehhhHHHHHHHhhcchhcchhhh
Confidence 99999999999999988889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 048582 508 HRRVVQVRRH 517 (555)
Q Consensus 508 rr~l~~v~~h 517 (555)
|.|....+-.
T Consensus 379 ~~r~~~~rl~ 388 (691)
T KOG1022|consen 379 QLRRIGSRLN 388 (691)
T ss_pred hhhhhhhhHh
Confidence 9888765443
No 5
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=97.26 E-value=0.0027 Score=62.95 Aligned_cols=103 Identities=17% Similarity=0.273 Sum_probs=78.0
Q ss_pred eEEeeecCCcccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhHHH
Q 048582 415 IRVHKYLPKGVSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLKS 494 (555)
Q Consensus 415 v~v~~~~p~~~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~ 494 (555)
+.+.++.+ ..++.+.|..+.+.++|.-.+..+..++||+.+|| |||.++. ..+.+.+......+.++..+..++.+
T Consensus 258 v~~~g~~~-~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~-pvI~~~~--~~~~~~~~~~~~g~~~~~~~~~~l~~ 333 (374)
T cd03801 258 VTFLGFVP-DEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGL-PVVASDV--GGIPEVVEDGETGLLVPPGDPEALAE 333 (374)
T ss_pred eEEEeccC-hhhHHHHHHhcCEEEecchhccccchHHHHHHcCC-cEEEeCC--CChhHHhcCCcceEEeCCCCHHHHHH
Confidence 44443332 35788999999999999876666788999999998 7888776 44566677677888888888877777
Q ss_pred HHhcC--CHHHHHHHHHHHH-HHhhhcccc
Q 048582 495 ILTSI--SPRQYIRMHRRVV-QVRRHFEFN 521 (555)
Q Consensus 495 iL~sI--s~~~i~~Mrr~l~-~v~~hf~y~ 521 (555)
.|..+ .++...+|.++.+ .+.++|.|.
T Consensus 334 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (374)
T cd03801 334 AILRLLDDPELRRRLGEAARERVAERFSWD 363 (374)
T ss_pred HHHHHHcChHHHHHHHHHHHHHHHHhcCHH
Confidence 77764 4667788888887 677777764
No 6
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=97.15 E-value=0.0052 Score=60.86 Aligned_cols=95 Identities=18% Similarity=0.206 Sum_probs=72.5
Q ss_pred ccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhHHHHHhcC--CHH
Q 048582 425 VSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSILTSI--SPR 502 (555)
Q Consensus 425 ~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~sI--s~~ 502 (555)
.+..+.|+++.+++.|...+-....++|||.+|| |||.+|....+ +++++-....+.++..++.++.+.+..+ .++
T Consensus 244 ~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~-Pvi~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~~~ 321 (348)
T cd03820 244 KNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGL-PVISFDCPTGP-SEIIEDGVNGLLVPNGDVEALAEALLRLMEDEE 321 (348)
T ss_pred chHHHHHHhCCEEEeCccccccCHHHHHHHHcCC-CEEEecCCCch-HhhhccCcceEEeCCCCHHHHHHHHHHHHcCHH
Confidence 4678899999999999877656778999999999 77777643222 2344444567778888887777776665 578
Q ss_pred HHHHHHHHHHHHhhhcccc
Q 048582 503 QYIRMHRRVVQVRRHFEFN 521 (555)
Q Consensus 503 ~i~~Mrr~l~~v~~hf~y~ 521 (555)
...+|.++.+.+.+.|.|.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~ 340 (348)
T cd03820 322 LRKRMGANARESAERFSIE 340 (348)
T ss_pred HHHHHHHHHHHHHHHhCHH
Confidence 8889999988888888774
No 7
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=96.95 E-value=0.0019 Score=59.80 Aligned_cols=95 Identities=20% Similarity=0.301 Sum_probs=63.7
Q ss_pred CeEEeeecCCcccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhHH
Q 048582 414 DIRVHKYLPKGVSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLK 493 (555)
Q Consensus 414 dv~v~~~~p~~~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~ 493 (555)
.+.+....+ ..+..+.++.+.+.++|...+..+..++|||.+|| |||.++. -.+.+++.=..-.+.++..++.++.
T Consensus 74 ~i~~~~~~~-~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~-pvI~~~~--~~~~e~~~~~~~g~~~~~~~~~~l~ 149 (172)
T PF00534_consen 74 NIIFLGYVP-DDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGC-PVIASDI--GGNNEIINDGVNGFLFDPNDIEELA 149 (172)
T ss_dssp TEEEEESHS-HHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT--EEEEESS--THHHHHSGTTTSEEEESTTSHHHHH
T ss_pred ccccccccc-ccccccccccceecccccccccccccccccccccc-ceeeccc--cCCceeeccccceEEeCCCCHHHHH
Confidence 455554433 44788999999999999998888899999999999 7777773 2333444333355677777888887
Q ss_pred HHHhcCCH--HHHHHHHHHHH
Q 048582 494 SILTSISP--RQYIRMHRRVV 512 (555)
Q Consensus 494 ~iL~sIs~--~~i~~Mrr~l~ 512 (555)
+.+..+-. +...+|.++.+
T Consensus 150 ~~i~~~l~~~~~~~~l~~~~~ 170 (172)
T PF00534_consen 150 DAIEKLLNDPELRQKLGKNAR 170 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHhc
Confidence 77777643 44555555544
No 8
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=96.91 E-value=0.0012 Score=70.20 Aligned_cols=148 Identities=13% Similarity=0.166 Sum_probs=69.9
Q ss_pred CCCccccCCCCccCCccccCCCCCcC---cCCCCCCCCCcEEEEEeccCCC-CchhHHHHhhhcCCCCeEEeeec-C---
Q 048582 351 NTSEKFSPVKDVSFPEINLQTGGLTG---LIGGPSPSRRSILAFFAGGVHG-PIRPVLLEHWENKDEDIRVHKYL-P--- 422 (555)
Q Consensus 351 ~~s~~FrpgkDVsIP~~~~~~~~~~~---~~~~~~p~~R~~L~fFaG~~~g-~iR~~Ll~~~~~~d~dv~v~~~~-p--- 422 (555)
|..-+||...||.+|........... ........+++..++++.++.+ ..|..+++.+.+. -.+..++.+ .
T Consensus 137 N~TMTYr~dSDi~~py~~~~~~~~~~~~~~~~~~~~~K~~~~~w~~Snc~~~~~R~~~~~~L~~~-~~vd~yG~c~~~~~ 215 (349)
T PF00852_consen 137 NWTMTYRRDSDIPLPYGYFSPRESPSEKDDLPNILKKKTKLAAWIVSNCNPHSGREEYVRELSKY-IPVDSYGKCGNNNP 215 (349)
T ss_dssp ------------------------------------TSSEEEEE--S-S--H-HHHHHHHHHHTT-S-EEE-SSTT--SS
T ss_pred ccccccccccccccccccccccccccccccccccccCCCceEEEEeeCcCCcccHHHHHHHHHhh-cCeEccCCCCCCCC
Confidence 34457999999999974432211100 0111222344555666665543 2488888888765 334444322 1
Q ss_pred -CcccHHHhcccccEEeecCC---CCCCCccHHHHHHhCCeeEEee--CC-c--cCCCCCCCCCCceEEEecCCChhhHH
Q 048582 423 -KGVSYYEMMRKSKYCLCPSG---YEVASPRVVEAIYTGCVPVLIS--EH-Y--VPPFSDVLNWKSFSVALSTRDIPNLK 493 (555)
Q Consensus 423 -~~~~y~~~l~~S~FCL~P~G---~~~~s~Rl~EAL~aGCIPVIis--D~-~--~LPF~dvLDW~~fSV~Ipe~di~~L~ 493 (555)
......+.+++-+|.|+... .+..+--|++|+.+|||||+++ .. + .+|=...|+.++|. ...+|.
T Consensus 216 ~~~~~~~~~~~~ykF~lafENs~c~dYiTEK~~~al~~g~VPI~~G~~~~~~~~~~P~~SfI~~~df~------s~~~La 289 (349)
T PF00852_consen 216 CPRDCKLELLSKYKFYLAFENSNCPDYITEKFWNALLAGTVPIYWGPPRPNYEEFAPPNSFIHVDDFK------SPKELA 289 (349)
T ss_dssp S--S-HHHHHHTEEEEEEE-SS--TT---HHHHHHHHTTSEEEEES---TTHHHHS-GGGSEEGGGSS------SHHHHH
T ss_pred cccccccccccCcEEEEEecCCCCCCCCCHHHHHHHHCCeEEEEECCEecccccCCCCCCccchhcCC------CHHHHH
Confidence 12358899999999998653 2345889999999999999999 32 2 35547778888773 567888
Q ss_pred HHHhcCC--HHHHH
Q 048582 494 SILTSIS--PRQYI 505 (555)
Q Consensus 494 ~iL~sIs--~~~i~ 505 (555)
+.|+.+. ++.|.
T Consensus 290 ~yl~~l~~n~~~Y~ 303 (349)
T PF00852_consen 290 DYLKYLDKNDELYN 303 (349)
T ss_dssp HHHHHHHT-HHHHH
T ss_pred HHHHHHhcCHHHHh
Confidence 8888884 44444
No 9
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.63 E-value=0.0062 Score=61.47 Aligned_cols=94 Identities=17% Similarity=0.191 Sum_probs=71.7
Q ss_pred ccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhHHHHHhcC--CHH
Q 048582 425 VSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSILTSI--SPR 502 (555)
Q Consensus 425 ~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~sI--s~~ 502 (555)
.+..+.|+.+.+|++|.+.+.....++|||++|| |||.++.- .+.+++.=....+.++..+..++.+.+..+ .++
T Consensus 258 ~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~-PvI~~~~~--~~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~ 334 (364)
T cd03814 258 EELAAAYASADVFVFPSRTETFGLVVLEAMASGL-PVVAPDAG--GPADIVTDGENGLLVEPGDAEAFAAALAALLADPE 334 (364)
T ss_pred HHHHHHHHhCCEEEECcccccCCcHHHHHHHcCC-CEEEcCCC--CchhhhcCCcceEEcCCCCHHHHHHHHHHHHcCHH
Confidence 4577899999999999988777788999999999 88888743 234555445666777777776555555554 578
Q ss_pred HHHHHHHHHHHHhhhcccc
Q 048582 503 QYIRMHRRVVQVRRHFEFN 521 (555)
Q Consensus 503 ~i~~Mrr~l~~v~~hf~y~ 521 (555)
.+.+|.++.++..++|.|.
T Consensus 335 ~~~~~~~~~~~~~~~~~~~ 353 (364)
T cd03814 335 LRRRMAARARAEAERRSWE 353 (364)
T ss_pred HHHHHHHHHHHHHhhcCHH
Confidence 8899999988877777764
No 10
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=96.53 E-value=0.022 Score=57.28 Aligned_cols=94 Identities=16% Similarity=0.189 Sum_probs=69.0
Q ss_pred ccHHHhcccccEEeecCCCCCC-----CccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhHHHHHhcC
Q 048582 425 VSYYEMMRKSKYCLCPSGYEVA-----SPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSILTSI 499 (555)
Q Consensus 425 ~~y~~~l~~S~FCL~P~G~~~~-----s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~sI 499 (555)
.++.+.|+.+.++++|...+.. ...++||+.+|| |||.++.-..+ +.+.=....+.++..+..++.+.|..+
T Consensus 286 ~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~-pvi~~~~~~~~--~~~~~~~~g~~~~~~~~~~l~~~i~~~ 362 (394)
T cd03794 286 EELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGK-PVLASVDGESA--ELVEEAGAGLVVPPGDPEALAAAILEL 362 (394)
T ss_pred HHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCC-cEEEecCCCch--hhhccCCcceEeCCCCHHHHHHHHHHH
Confidence 4678899999999999876643 456899999998 88888754322 223222566777877888877777776
Q ss_pred --CHHHHHHHHHHHHHHhh-hcccc
Q 048582 500 --SPRQYIRMHRRVVQVRR-HFEFN 521 (555)
Q Consensus 500 --s~~~i~~Mrr~l~~v~~-hf~y~ 521 (555)
.++++.+|.++.++..+ +|.|.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~s~~ 387 (394)
T cd03794 363 LDDPEERAEMGENGRRYVEEKFSRE 387 (394)
T ss_pred HhChHHHHHHHHHHHHHHHHhhcHH
Confidence 68888899888886554 77764
No 11
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=96.43 E-value=0.024 Score=56.86 Aligned_cols=129 Identities=17% Similarity=0.260 Sum_probs=78.3
Q ss_pred cEEEEEeccCCCCchhHHHHhhh--cCCCCeEEeeecCCcccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEee
Q 048582 387 SILAFFAGGVHGPIRPVLLEHWE--NKDEDIRVHKYLPKGVSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLIS 464 (555)
Q Consensus 387 ~~L~fFaG~~~g~iR~~Ll~~~~--~~d~dv~v~~~~p~~~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIis 464 (555)
.+-+.+.|...+.....+..... +..+.+.+.++.+ ..+..+.|..+.++++|.-.+.....++|||++|| |||.+
T Consensus 234 ~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~-~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~-PvI~~ 311 (375)
T cd03821 234 DWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLY-GEDKAAALADADLFVLPSHSENFGIVVAEALACGT-PVVTT 311 (375)
T ss_pred CeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCC-hHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCC-CEEEc
Confidence 45567777654443333322111 1122344443332 24678889999999999877666778999999997 88888
Q ss_pred CCccCCCCCCCCCCceEEEecCCChhhHHHHHhcC--CHHHHHHHHHHHHHH-hhhcccc
Q 048582 465 EHYVPPFSDVLNWKSFSVALSTRDIPNLKSILTSI--SPRQYIRMHRRVVQV-RRHFEFN 521 (555)
Q Consensus 465 D~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~sI--s~~~i~~Mrr~l~~v-~~hf~y~ 521 (555)
+.- ...+.+.- ...+.++.+ ..++.+.+..+ .++++.+|.++.++. .++|.|.
T Consensus 312 ~~~--~~~~~~~~-~~~~~~~~~-~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~ 367 (375)
T cd03821 312 DKV--PWQELIEY-GCGWVVDDD-VDALAAALRRALELPQRLKAMGENGRALVEERFSWT 367 (375)
T ss_pred CCC--CHHHHhhc-CceEEeCCC-hHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHH
Confidence 743 23343333 444444443 35444444443 246788888888876 8888775
No 12
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=96.41 E-value=0.018 Score=63.04 Aligned_cols=98 Identities=16% Similarity=0.223 Sum_probs=75.8
Q ss_pred ccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCC---CceEEEecCCChhhHHHHHhcC--
Q 048582 425 VSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNW---KSFSVALSTRDIPNLKSILTSI-- 499 (555)
Q Consensus 425 ~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW---~~fSV~Ipe~di~~L~~iL~sI-- 499 (555)
.+..+.|+.+..+++|...+....-++|||++| +|||.++.- ...++++- ....+.++..|..++.+.|..+
T Consensus 323 ~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G-~PVI~s~~g--g~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 399 (465)
T PLN02871 323 DELSQAYASGDVFVMPSESETLGFVVLEAMASG-VPVVAARAG--GIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA 399 (465)
T ss_pred HHHHHHHHHCCEEEECCcccccCcHHHHHHHcC-CCEEEcCCC--CcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 468889999999999998876677899999999 599998743 23455543 6778888888888776666554
Q ss_pred CHHHHHHHHHHHHHHhhhccccCCCC
Q 048582 500 SPRQYIRMHRRVVQVRRHFEFNSPPK 525 (555)
Q Consensus 500 s~~~i~~Mrr~l~~v~~hf~y~~p~~ 525 (555)
.++...+|.++.++..+.|.|..-..
T Consensus 400 ~~~~~~~~~~~a~~~~~~fsw~~~a~ 425 (465)
T PLN02871 400 DPELRERMGAAAREEVEKWDWRAATR 425 (465)
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 46778889999988778888865433
No 13
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=96.35 E-value=0.039 Score=57.63 Aligned_cols=128 Identities=16% Similarity=0.157 Sum_probs=84.4
Q ss_pred cEEEEEeccCCCCchhHHHHhhhcCC--CCeEEeeecCCcccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEee
Q 048582 387 SILAFFAGGVHGPIRPVLLEHWENKD--EDIRVHKYLPKGVSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLIS 464 (555)
Q Consensus 387 ~~L~fFaG~~~g~iR~~Ll~~~~~~d--~dv~v~~~~p~~~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIis 464 (555)
++-+.+.|. |..+..+.+..+... ..+.+. ....+..+.|+.+.++++|.-.+-...-++|||.+|| |||.+
T Consensus 229 ~~~l~i~G~--g~~~~~~~~~~~~~~~~~~v~~~---g~~~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~-Pvv~s 302 (374)
T TIGR03088 229 RLRLVIVGD--GPARGACEQMVRAAGLAHLVWLP---GERDDVPALMQALDLFVLPSLAEGISNTILEAMASGL-PVIAT 302 (374)
T ss_pred ceEEEEecC--CchHHHHHHHHHHcCCcceEEEc---CCcCCHHHHHHhcCEEEeccccccCchHHHHHHHcCC-CEEEc
Confidence 466677773 444554443333221 112221 1234688899999999998766656778999999997 99998
Q ss_pred CCccCCCCCCCCCCceEEEecCCChhhHHHHHhcC--CHHHHHHHHHHHHH-HhhhccccC
Q 048582 465 EHYVPPFSDVLNWKSFSVALSTRDIPNLKSILTSI--SPRQYIRMHRRVVQ-VRRHFEFNS 522 (555)
Q Consensus 465 D~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~sI--s~~~i~~Mrr~l~~-v~~hf~y~~ 522 (555)
|.- ...+++.-......++..+..++.+.|..+ .++...+|.++.++ +.++|.|..
T Consensus 303 ~~~--g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~ 361 (374)
T TIGR03088 303 AVG--GNPELVQHGVTGALVPPGDAVALARALQPYVSDPAARRAHGAAGRARAEQQFSINA 361 (374)
T ss_pred CCC--CcHHHhcCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 853 345666666677888888888777666654 35566777777665 457777643
No 14
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=96.32 E-value=0.047 Score=54.27 Aligned_cols=95 Identities=16% Similarity=0.159 Sum_probs=69.0
Q ss_pred cccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhHHHHHhcC--CH
Q 048582 424 GVSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSILTSI--SP 501 (555)
Q Consensus 424 ~~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~sI--s~ 501 (555)
..+..+.|+.+.+|++|...+-....++||+.+|| |||.+|.-. ..+.+.=....+.++..+..++.+.+..+ .+
T Consensus 254 ~~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~-Pvi~s~~~~--~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~~ 330 (359)
T cd03808 254 RDDVPELLAAADVFVLPSYREGLPRVLLEAMAMGR-PVIATDVPG--CREAVIDGVNGFLVPPGDAEALADAIERLIEDP 330 (359)
T ss_pred cccHHHHHHhccEEEecCcccCcchHHHHHHHcCC-CEEEecCCC--chhhhhcCcceEEECCCCHHHHHHHHHHHHhCH
Confidence 34678899999999999877766788999999997 888887532 23444434556677777877766666654 46
Q ss_pred HHHHHHHHHHHHH-hhhcccc
Q 048582 502 RQYIRMHRRVVQV-RRHFEFN 521 (555)
Q Consensus 502 ~~i~~Mrr~l~~v-~~hf~y~ 521 (555)
+.+.+|.++.++. .++|.+.
T Consensus 331 ~~~~~~~~~~~~~~~~~~s~~ 351 (359)
T cd03808 331 ELRARMGQAARKRAEEEFDEE 351 (359)
T ss_pred HHHHHHHHHHHHHHHHhcCHH
Confidence 7778888777765 6776653
No 15
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=96.16 E-value=0.053 Score=55.33 Aligned_cols=95 Identities=18% Similarity=0.194 Sum_probs=71.2
Q ss_pred cccHHHhcccccEEeecC-CCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhHHHHHh-cC--
Q 048582 424 GVSYYEMMRKSKYCLCPS-GYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSILT-SI-- 499 (555)
Q Consensus 424 ~~~y~~~l~~S~FCL~P~-G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~-sI-- 499 (555)
..+..+.|+.|..+++|. -.+-...-++|||++|| |||.+|. -+..+.++-....+.++..+...+.+.|. .+
T Consensus 254 ~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~-PvI~~~~--~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~ 330 (355)
T cd03819 254 CSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGR-PVIASDH--GGARETVRPGETGLLVPPGDAEALAQALDQILSL 330 (355)
T ss_pred cccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCC-CEEEcCC--CCcHHHHhCCCceEEeCCCCHHHHHHHHHHHHhh
Confidence 347889999999999987 44444567999999999 8888873 45567776666777788889888777763 32
Q ss_pred CHHHHHHHHHHHHH-Hhhhcccc
Q 048582 500 SPRQYIRMHRRVVQ-VRRHFEFN 521 (555)
Q Consensus 500 s~~~i~~Mrr~l~~-v~~hf~y~ 521 (555)
++++..+|+++.++ +..+|.|.
T Consensus 331 ~~~~~~~~~~~a~~~~~~~f~~~ 353 (355)
T cd03819 331 LPEGRAKMFAKARMCVETLFSYD 353 (355)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhc
Confidence 67888888888875 45666553
No 16
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=96.15 E-value=0.053 Score=55.83 Aligned_cols=129 Identities=20% Similarity=0.270 Sum_probs=82.4
Q ss_pred cEEEEEeccCCCCchhHHHHhhhc--CCCCeEEeeecCCcccHHHhcccccEEeecCCC------CCCCccHHHHHHhCC
Q 048582 387 SILAFFAGGVHGPIRPVLLEHWEN--KDEDIRVHKYLPKGVSYYEMMRKSKYCLCPSGY------EVASPRVVEAIYTGC 458 (555)
Q Consensus 387 ~~L~fFaG~~~g~iR~~Ll~~~~~--~d~dv~v~~~~p~~~~y~~~l~~S~FCL~P~G~------~~~s~Rl~EAL~aGC 458 (555)
.+-+.++|. |..+..+.+..+. -...+.+..+.+ ..+..+.|+.+..+++|.-. +-....++|||++||
T Consensus 219 ~~~l~ivG~--g~~~~~~~~~~~~~~~~~~v~~~g~~~-~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~ 295 (367)
T cd05844 219 EVRLVIIGD--GPLLAALEALARALGLGGRVTFLGAQP-HAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGV 295 (367)
T ss_pred CeEEEEEeC--chHHHHHHHHHHHcCCCCeEEECCCCC-HHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCC
Confidence 466777774 3334433333222 122344333221 23567889999998887532 223567999999998
Q ss_pred eeEEeeCCccCCCCCCCCCCceEEEecCCChhhHHHHHhcC--CHHHHHHHHHHHHH-Hhhhcccc
Q 048582 459 VPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSILTSI--SPRQYIRMHRRVVQ-VRRHFEFN 521 (555)
Q Consensus 459 IPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~sI--s~~~i~~Mrr~l~~-v~~hf~y~ 521 (555)
|||.+|.-. ..+.+.=....+.++..+..++.+.|..+ .++.+.+|.++.++ +.++|.|.
T Consensus 296 -PvI~s~~~~--~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~ 358 (367)
T cd05844 296 -PVVATRHGG--IPEAVEDGETGLLVPEGDVAALAAALGRLLADPDLRARMGAAGRRRVEERFDLR 358 (367)
T ss_pred -CEEEeCCCC--chhheecCCeeEEECCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHCCHH
Confidence 999988643 34555555677888888888776666554 35667788887775 56788775
No 17
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=96.13 E-value=0.011 Score=59.76 Aligned_cols=93 Identities=16% Similarity=0.184 Sum_probs=70.4
Q ss_pred ccHHHhcccccEEeecCCCC--CCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhHHHHHhcC--C
Q 048582 425 VSYYEMMRKSKYCLCPSGYE--VASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSILTSI--S 500 (555)
Q Consensus 425 ~~y~~~l~~S~FCL~P~G~~--~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~sI--s 500 (555)
.+..+.|+.+.+++.|..++ ..+..+.|||++|| |||.+|.-- .+++.+ ....+.++..+..++.+.|..+ .
T Consensus 259 ~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~-PvI~~~~~~--~~~i~~-~~~g~~~~~~d~~~~~~~l~~l~~~ 334 (366)
T cd03822 259 EELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGK-PVISTPVGH--AEEVLD-GGTGLLVPPGDPAALAEAIRRLLAD 334 (366)
T ss_pred HHHHHHHhhcCEEEecccccccccchHHHHHHHcCC-CEEecCCCC--hheeee-CCCcEEEcCCCHHHHHHHHHHHHcC
Confidence 46789999999999998887 66788999999999 999987432 333334 3445667777777766666654 2
Q ss_pred HHHHHHHHHHHHHHhhhcccc
Q 048582 501 PRQYIRMHRRVVQVRRHFEFN 521 (555)
Q Consensus 501 ~~~i~~Mrr~l~~v~~hf~y~ 521 (555)
+++..+|+++.++..+.|.|.
T Consensus 335 ~~~~~~~~~~~~~~~~~~s~~ 355 (366)
T cd03822 335 PELAQALRARAREYARAMSWE 355 (366)
T ss_pred hHHHHHHHHHHHHHHhhCCHH
Confidence 468889999999887777765
No 18
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=96.09 E-value=0.049 Score=57.88 Aligned_cols=118 Identities=17% Similarity=0.193 Sum_probs=79.7
Q ss_pred chhHHHHhhhc--CCCCeEEeeecCCcccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCC
Q 048582 400 IRPVLLEHWEN--KDEDIRVHKYLPKGVSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNW 477 (555)
Q Consensus 400 iR~~Ll~~~~~--~d~dv~v~~~~p~~~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW 477 (555)
.+..+++.... ..+.+.+..+.+ ..++.+.|..+..++.|.-.+..+.-++|||++|| |||.+|. -+..+++.-
T Consensus 266 ~~~~~~~~~~~~~~~~~V~f~G~v~-~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~-PVIas~~--~g~~e~i~~ 341 (396)
T cd03818 266 WKQHMLDELGGRLDLSRVHFLGRVP-YDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGC-LVVGSDT--APVREVITD 341 (396)
T ss_pred HHHHHHHHhhcccCcceEEEeCCCC-HHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCC-CEEEcCC--CCchhhccc
Confidence 34555665543 122344443332 24678899999999988766555567999999999 8888875 356677776
Q ss_pred CceEEEecCCChhhHHHHHhcC--CHHHHHHHHHHHHH-Hhhhcccc
Q 048582 478 KSFSVALSTRDIPNLKSILTSI--SPRQYIRMHRRVVQ-VRRHFEFN 521 (555)
Q Consensus 478 ~~fSV~Ipe~di~~L~~iL~sI--s~~~i~~Mrr~l~~-v~~hf~y~ 521 (555)
..-.+.++..|...+.+.+..+ .+++..+|.++.++ +.++|.|.
T Consensus 342 ~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~~fs~~ 388 (396)
T cd03818 342 GENGLLVDFFDPDALAAAVIELLDDPARRARLRRAARRTALRYDLLS 388 (396)
T ss_pred CCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhccHH
Confidence 6677788888877666555443 35677888888875 45557764
No 19
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.09 E-value=0.022 Score=58.82 Aligned_cols=94 Identities=17% Similarity=0.218 Sum_probs=71.3
Q ss_pred ccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhHHHHHhcC--CHH
Q 048582 425 VSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSILTSI--SPR 502 (555)
Q Consensus 425 ~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~sI--s~~ 502 (555)
.+..+.|..+..+++|.-.+.....++|||.+|| |||.++.- ...+++.-..-...++..+..++.+.+..+ .++
T Consensus 262 ~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~-PvI~s~~~--~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~~~~ 338 (371)
T cd04962 262 DHVEELLSIADLFLLPSEKESFGLAALEAMACGV-PVVASNAG--GIPEVVKHGETGFLVDVGDVEAMAEYALSLLEDDE 338 (371)
T ss_pred ccHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCC-CEEEeCCC--CchhhhcCCCceEEcCCCCHHHHHHHHHHHHhCHH
Confidence 3678899999999999866656678999999995 99998754 345666555556677877887766665554 577
Q ss_pred HHHHHHHHHHHH-hhhcccc
Q 048582 503 QYIRMHRRVVQV-RRHFEFN 521 (555)
Q Consensus 503 ~i~~Mrr~l~~v-~~hf~y~ 521 (555)
.+.+|+++.++. .++|.|.
T Consensus 339 ~~~~~~~~~~~~~~~~fs~~ 358 (371)
T cd04962 339 LWQEFSRAARNRAAERFDSE 358 (371)
T ss_pred HHHHHHHHHHHHHHHhCCHH
Confidence 888999988876 7787764
No 20
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=96.06 E-value=0.049 Score=57.63 Aligned_cols=131 Identities=19% Similarity=0.225 Sum_probs=84.8
Q ss_pred EEEEEeccCC--C-CchhHHHHhhhcC--CCCeEEeeecCCcccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEE
Q 048582 388 ILAFFAGGVH--G-PIRPVLLEHWENK--DEDIRVHKYLPKGVSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVL 462 (555)
Q Consensus 388 ~L~fFaG~~~--g-~iR~~Ll~~~~~~--d~dv~v~~~~p~~~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVI 462 (555)
.-+.+.|+.. | ..+..+.+..+.. .+.+.+.++.+ ..+..+.|+.+..|+.|.=.+....-++|||++|| |||
T Consensus 253 ~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~-~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~-Pvi 330 (405)
T TIGR03449 253 LRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRP-PEELVHVYRAADVVAVPSYNESFGLVAMEAQACGT-PVV 330 (405)
T ss_pred eEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCC-HHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCC-CEE
Confidence 5567777643 3 2333343332222 22344443321 34677899999999988655555667999999998 999
Q ss_pred eeCCccCCCCCCCCCCceEEEecCCChhhHHHHHhcC--CHHHHHHHHHHHHHHhhhccccC
Q 048582 463 ISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSILTSI--SPRQYIRMHRRVVQVRRHFEFNS 522 (555)
Q Consensus 463 isD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~sI--s~~~i~~Mrr~l~~v~~hf~y~~ 522 (555)
.++.- ...+++.=....+.++..|..++.+.|..+ .++...+|+++.++..++|.|..
T Consensus 331 ~~~~~--~~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~fsw~~ 390 (405)
T TIGR03449 331 AARVG--GLPVAVADGETGLLVDGHDPADWADALARLLDDPRTRIRMGAAAVEHAAGFSWAA 390 (405)
T ss_pred EecCC--CcHhhhccCCceEECCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHHH
Confidence 88752 233555444556777888887766555543 45677899998888778888864
No 21
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=96.05 E-value=0.048 Score=55.18 Aligned_cols=93 Identities=19% Similarity=0.285 Sum_probs=69.9
Q ss_pred ccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhHHHHHhc-C-CHH
Q 048582 425 VSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSILTS-I-SPR 502 (555)
Q Consensus 425 ~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~s-I-s~~ 502 (555)
.+..+.+..+.+++.|.-.+-.+..++|||.+|| |||.++.- .+.+.+ ....+.++..+..++.+.|.. + .++
T Consensus 264 ~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~-pvI~~~~~--~~~e~~--~~~~~~~~~~~~~~~~~~i~~l~~~~~ 338 (365)
T cd03809 264 EELAALYRGARAFVFPSLYEGFGLPVLEAMACGT-PVIASNIS--SLPEVA--GDAALYFDPLDPEALAAAIERLLEDPA 338 (365)
T ss_pred hHHHHHHhhhhhhcccchhccCCCCHHHHhcCCC-cEEecCCC--Ccccee--cCceeeeCCCCHHHHHHHHHHHhcCHH
Confidence 4678899999999998765555677999999998 88887652 234444 345667777788877777776 3 477
Q ss_pred HHHHHHHHHHHHhhhccccC
Q 048582 503 QYIRMHRRVVQVRRHFEFNS 522 (555)
Q Consensus 503 ~i~~Mrr~l~~v~~hf~y~~ 522 (555)
.+.+|.++.+.+.+.|.|..
T Consensus 339 ~~~~~~~~~~~~~~~~sw~~ 358 (365)
T cd03809 339 LREELRERGLARAKRFSWEK 358 (365)
T ss_pred HHHHHHHHHHHHHHhCCHHH
Confidence 78888888888888888753
No 22
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=95.98 E-value=0.051 Score=55.46 Aligned_cols=92 Identities=15% Similarity=0.184 Sum_probs=66.7
Q ss_pred cHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhHHHHHhcC--CHHH
Q 048582 426 SYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSILTSI--SPRQ 503 (555)
Q Consensus 426 ~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~sI--s~~~ 503 (555)
...+.|+.|.+++.|...+....-++|||.+|| |||..+. -...+.+.=....+.++..+..++.+.|..+ .+++
T Consensus 257 ~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~-PvI~~~~--~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~~~~ 333 (365)
T cd03825 257 SLALIYSAADVFVVPSLQENFPNTAIEALACGT-PVVAFDV--GGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLADPDE 333 (365)
T ss_pred HHHHHHHhCCEEEeccccccccHHHHHHHhcCC-CEEEecC--CCChhheeCCCceEEeCCCCHHHHHHHHHHHHhCHHH
Confidence 467789999999999887777788999999999 7887764 3444555545566777777776655555443 3556
Q ss_pred HHHHHHHHHHH-hhhccc
Q 048582 504 YIRMHRRVVQV-RRHFEF 520 (555)
Q Consensus 504 i~~Mrr~l~~v-~~hf~y 520 (555)
+.+|+++.+.. .++|.|
T Consensus 334 ~~~~~~~~~~~~~~~~s~ 351 (365)
T cd03825 334 REELGEAARELAENEFDS 351 (365)
T ss_pred HHHHHHHHHHHHHHhcCH
Confidence 88888887764 456655
No 23
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=95.96 E-value=0.065 Score=54.48 Aligned_cols=103 Identities=16% Similarity=0.197 Sum_probs=70.2
Q ss_pred eEEeeecCCcccHHHhcccccEEeecCCC------CCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCC
Q 048582 415 IRVHKYLPKGVSYYEMMRKSKYCLCPSGY------EVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRD 488 (555)
Q Consensus 415 v~v~~~~p~~~~y~~~l~~S~FCL~P~G~------~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~d 488 (555)
+.+..+.+ ..+..+.++++.++++|... +-....++||+.+|| |||.++.- .+.+++.=..-...++..+
T Consensus 238 v~~~g~~~-~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~-Pvi~~~~~--~~~~~i~~~~~g~~~~~~~ 313 (355)
T cd03799 238 VTLLGAKS-QEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGL-PVISTDVS--GIPELVEDGETGLLVPPGD 313 (355)
T ss_pred EEECCcCC-hHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCC-CEEecCCC--CcchhhhCCCceEEeCCCC
Confidence 44444332 34678899999999998765 445678999999999 77776642 3345555444566777777
Q ss_pred hhhHHHHHhcC--CHHHHHHHHHHHHH-Hhhhcccc
Q 048582 489 IPNLKSILTSI--SPRQYIRMHRRVVQ-VRRHFEFN 521 (555)
Q Consensus 489 i~~L~~iL~sI--s~~~i~~Mrr~l~~-v~~hf~y~ 521 (555)
..++.+.|..+ .++++.+|.++.++ +..+|.|.
T Consensus 314 ~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~~~~s~~ 349 (355)
T cd03799 314 PEALADAIERLLDDPELRREMGEAGRARVEEEFDIR 349 (355)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHH
Confidence 77665555544 46667888888875 45777664
No 24
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=95.95 E-value=0.097 Score=51.76 Aligned_cols=90 Identities=19% Similarity=0.257 Sum_probs=62.5
Q ss_pred cHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhH----HHHHhcCC-
Q 048582 426 SYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNL----KSILTSIS- 500 (555)
Q Consensus 426 ~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L----~~iL~sIs- 500 (555)
+..+.++.+.++++|.-.+-....++|||.+|| |||.+|.- ...+++.=....+.++..+...+ ..++....
T Consensus 256 ~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~-PvI~~~~~--~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~ 332 (353)
T cd03811 256 NPYPYLKAADLFVLSSRYEGFPNVLLEAMALGT-PVVATDCP--GPREILEDGENGLLVPVGDEAALAAAALALLDLLLD 332 (353)
T ss_pred CHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCC-CEEEcCCC--ChHHHhcCCCceEEECCCCHHHHHHHHHHHHhccCC
Confidence 456889999999999876656778999999999 78887654 33455655666777888887765 33333333
Q ss_pred HHHHHHHHH-HHHHHhhhc
Q 048582 501 PRQYIRMHR-RVVQVRRHF 518 (555)
Q Consensus 501 ~~~i~~Mrr-~l~~v~~hf 518 (555)
++.+.+|.. +...+.++|
T Consensus 333 ~~~~~~~~~~~~~~~~~~~ 351 (353)
T cd03811 333 PELRERLAAAARERVAREY 351 (353)
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 455666776 444555554
No 25
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=95.88 E-value=0.095 Score=52.71 Aligned_cols=91 Identities=15% Similarity=0.207 Sum_probs=62.7
Q ss_pred ccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhHHHHHhcC--CHH
Q 048582 425 VSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSILTSI--SPR 502 (555)
Q Consensus 425 ~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~sI--s~~ 502 (555)
.+..+.|..+.++++|...+.....++|||.+|| |||..+.- .+.+.+.=....+.++..+. ++.+.+..+ .++
T Consensus 270 ~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~-PvI~~~~~--~~~~~i~~~~~g~~~~~~~~-~~~~~i~~l~~~~~ 345 (374)
T cd03817 270 EELPDYYKAADLFVFASTTETQGLVLLEAMAAGL-PVVAVDAP--GLPDLVADGENGFLFPPGDE-ALAEALLRLLQDPE 345 (374)
T ss_pred HHHHHHHHHcCEEEecccccCcChHHHHHHHcCC-cEEEeCCC--ChhhheecCceeEEeCCCCH-HHHHHHHHHHhChH
Confidence 4678899999999999877766788999999998 77777643 23455544455566666553 333333333 355
Q ss_pred HHHHHHHHHHHHhhhcc
Q 048582 503 QYIRMHRRVVQVRRHFE 519 (555)
Q Consensus 503 ~i~~Mrr~l~~v~~hf~ 519 (555)
...+|+++.++..+++.
T Consensus 346 ~~~~~~~~~~~~~~~~~ 362 (374)
T cd03817 346 LRRRLSKNAEESAEKFS 362 (374)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56788888887776654
No 26
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=95.58 E-value=0.071 Score=53.55 Aligned_cols=88 Identities=17% Similarity=0.195 Sum_probs=64.3
Q ss_pred ccHHHhcccccEEeecCC-CCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhHHHHHhcC--CH
Q 048582 425 VSYYEMMRKSKYCLCPSG-YEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSILTSI--SP 501 (555)
Q Consensus 425 ~~y~~~l~~S~FCL~P~G-~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~sI--s~ 501 (555)
.+..+.++.+..+++|.- .+.....++|||++|| |||.++.- ...+.++.....+.++..|+.++.+.+..+ .+
T Consensus 254 ~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~-Pvi~~~~~--~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~ 330 (359)
T cd03823 254 EEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGV-PVIASDIG--GMAELVRDGVNGLLFPPGDAEDLAAALERLIDDP 330 (359)
T ss_pred HHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCC-CEEECCCC--CHHHHhcCCCcEEEECCCCHHHHHHHHHHHHhCh
Confidence 467889999999999974 3445678999999995 88887742 345667776678888888887666655554 46
Q ss_pred HHHHHHHHHHHHHh
Q 048582 502 RQYIRMHRRVVQVR 515 (555)
Q Consensus 502 ~~i~~Mrr~l~~v~ 515 (555)
+...+|+++.++..
T Consensus 331 ~~~~~~~~~~~~~~ 344 (359)
T cd03823 331 DLLERLRAGIEPPR 344 (359)
T ss_pred HHHHHHHHhHHHhh
Confidence 67777777766543
No 27
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.50 E-value=0.043 Score=46.24 Aligned_cols=72 Identities=15% Similarity=0.355 Sum_probs=46.3
Q ss_pred CCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEec-CCChhhHHHHHhcCCHHHHHHHHHHHH-HHhhhcccc
Q 048582 446 ASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALS-TRDIPNLKSILTSISPRQYIRMHRRVV-QVRRHFEFN 521 (555)
Q Consensus 446 ~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ip-e~di~~L~~iL~sIs~~~i~~Mrr~l~-~v~~hf~y~ 521 (555)
.+.|++|++++|| |||..+. ..+.+.+++..-.+.+. .+++.+....|.. .++++.+|.++.+ .|.+++.|.
T Consensus 11 ~~~r~~E~~a~G~-~vi~~~~--~~~~~~~~~~~~~~~~~~~~el~~~i~~ll~-~~~~~~~ia~~a~~~v~~~~t~~ 84 (92)
T PF13524_consen 11 PNMRIFEAMACGT-PVISDDS--PGLREIFEDGEHIITYNDPEELAEKIEYLLE-NPEERRRIAKNARERVLKRHTWE 84 (92)
T ss_pred CchHHHHHHHCCC-eEEECCh--HHHHHHcCCCCeEEEECCHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHhCCHH
Confidence 4689999999999 5565554 22334456665666664 3344433333333 6888899988887 466677764
No 28
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=95.48 E-value=0.11 Score=56.23 Aligned_cols=128 Identities=18% Similarity=0.222 Sum_probs=84.3
Q ss_pred EEEEEeccCCCCchhHHHHhhhcC--CCCeEEeeecCCcccHHHhcccccEEeecCCC------CCCCccHHHHHHhCCe
Q 048582 388 ILAFFAGGVHGPIRPVLLEHWENK--DEDIRVHKYLPKGVSYYEMMRKSKYCLCPSGY------EVASPRVVEAIYTGCV 459 (555)
Q Consensus 388 ~L~fFaG~~~g~iR~~Ll~~~~~~--d~dv~v~~~~p~~~~y~~~l~~S~FCL~P~G~------~~~s~Rl~EAL~aGCI 459 (555)
+-+.+.|. |+.++.+.+..+.. ++.+.+.++.+ ..+..+.|+.+..+++|.=. +-...-++|||.+||
T Consensus 254 ~~l~ivG~--G~~~~~l~~~~~~~~l~~~V~~~G~~~-~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~- 329 (406)
T PRK15427 254 FRYRILGI--GPWERRLRTLIEQYQLEDVVEMPGFKP-SHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGI- 329 (406)
T ss_pred EEEEEEEC--chhHHHHHHHHHHcCCCCeEEEeCCCC-HHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCC-
Confidence 44555663 44555554444332 22344444332 34678899999999988521 222456999999997
Q ss_pred eEEeeCCccCCCCCCCCCCceEEEecCCChhhHHHHHhcC---CHHHHHHHHHHHHH-Hhhhcccc
Q 048582 460 PVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSILTSI---SPRQYIRMHRRVVQ-VRRHFEFN 521 (555)
Q Consensus 460 PVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~sI---s~~~i~~Mrr~l~~-v~~hf~y~ 521 (555)
|||.++.-- ..|++.=..-.+.++..|..++.+.|..+ ++++..+|.++.++ +.++|.|.
T Consensus 330 PVI~t~~~g--~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~~~ 393 (406)
T PRK15427 330 PVVSTLHSG--IPELVEADKSGWLVPENDAQALAQRLAAFSQLDTDELAPVVKRAREKVETDFNQQ 393 (406)
T ss_pred CEEEeCCCC--chhhhcCCCceEEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCHH
Confidence 999987533 33566555667788989988877777665 56778889988874 66777764
No 29
>PRK10307 putative glycosyl transferase; Provisional
Probab=95.48 E-value=0.075 Score=56.70 Aligned_cols=129 Identities=9% Similarity=0.168 Sum_probs=84.2
Q ss_pred EEEEEeccCCCCchhHHHHhhhcCC-CCeEEeeecCCcccHHHhcccccEEeecCCCCC----CCccHHHHHHhCCeeEE
Q 048582 388 ILAFFAGGVHGPIRPVLLEHWENKD-EDIRVHKYLPKGVSYYEMMRKSKYCLCPSGYEV----ASPRVVEAIYTGCVPVL 462 (555)
Q Consensus 388 ~L~fFaG~~~g~iR~~Ll~~~~~~d-~dv~v~~~~p~~~~y~~~l~~S~FCL~P~G~~~----~s~Rl~EAL~aGCIPVI 462 (555)
+-+.+.|. |..++.+.+..+... ..+.+..+.+ ..+..+.|+.+..+++|.-.+. ....++|||++|| |||
T Consensus 260 ~~l~ivG~--g~~~~~l~~~~~~~~l~~v~f~G~~~-~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~-PVi 335 (412)
T PRK10307 260 LIFVICGQ--GGGKARLEKMAQCRGLPNVHFLPLQP-YDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGR-NVV 335 (412)
T ss_pred eEEEEECC--ChhHHHHHHHHHHcCCCceEEeCCCC-HHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCC-CEE
Confidence 55667773 445555544333211 1354443332 3467889999999998754332 2345899999997 999
Q ss_pred eeCCccCCCCCCCCCCceEEEecCCChhhHHHHHhcC--CHHHHHHHHHHHHH-HhhhccccC
Q 048582 463 ISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSILTSI--SPRQYIRMHRRVVQ-VRRHFEFNS 522 (555)
Q Consensus 463 isD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~sI--s~~~i~~Mrr~l~~-v~~hf~y~~ 522 (555)
.++.--..+.+++. .-.+.++..|+.+|.+.|..+ .++...+|+++.++ +.++|.|..
T Consensus 336 ~s~~~g~~~~~~i~--~~G~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~ 396 (412)
T PRK10307 336 ATAEPGTELGQLVE--GIGVCVEPESVEALVAAIAALARQALLRPKLGTVAREYAERTLDKEN 396 (412)
T ss_pred EEeCCCchHHHHHh--CCcEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHH
Confidence 98743233445666 467777888888888877765 45677889998886 567888854
No 30
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=95.43 E-value=0.037 Score=57.48 Aligned_cols=94 Identities=18% Similarity=0.228 Sum_probs=69.8
Q ss_pred ccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhHHHHHhcC--CHH
Q 048582 425 VSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSILTSI--SPR 502 (555)
Q Consensus 425 ~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~sI--s~~ 502 (555)
.+..+.++.+..+++|.-.+.....++|||.+|+ |||.++.- ...+++.=....+.++..+..++.+.+..+ .++
T Consensus 294 ~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~-Pvi~s~~~--~~~e~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~ 370 (398)
T cd03800 294 EDLPALYRAADVFVNPALYEPFGLTALEAMACGL-PVVATAVG--GPRDIVVDGVTGLLVDPRDPEALAAALRRLLTDPA 370 (398)
T ss_pred HHHHHHHHhCCEEEecccccccCcHHHHHHhcCC-CEEECCCC--CHHHHccCCCCeEEeCCCCHHHHHHHHHHHHhCHH
Confidence 3577889999999999876665677999999996 99998742 344555544567778877877766665554 467
Q ss_pred HHHHHHHHHHHHh-hhcccc
Q 048582 503 QYIRMHRRVVQVR-RHFEFN 521 (555)
Q Consensus 503 ~i~~Mrr~l~~v~-~hf~y~ 521 (555)
++.+|.++.++.. ++|.|.
T Consensus 371 ~~~~~~~~a~~~~~~~~s~~ 390 (398)
T cd03800 371 LRRRLSRAGLRRARARYTWE 390 (398)
T ss_pred HHHHHHHHHHHHHHHhCCHH
Confidence 7888998887654 888775
No 31
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=95.40 E-value=0.11 Score=55.30 Aligned_cols=95 Identities=14% Similarity=0.112 Sum_probs=64.0
Q ss_pred ccHHHhcccccEEeecCCC-CCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEE-EecCCChhhHHHHHhc-CCH
Q 048582 425 VSYYEMMRKSKYCLCPSGY-EVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSV-ALSTRDIPNLKSILTS-ISP 501 (555)
Q Consensus 425 ~~y~~~l~~S~FCL~P~G~-~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV-~Ipe~di~~L~~iL~s-Is~ 501 (555)
.+..+.|+.+..|++|..+ +....-++|||++|| |||.++.-- ..|++.-..... .++..+..++.+.|.. +.+
T Consensus 268 ~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~-PVI~s~~gg--~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d 344 (380)
T PRK15484 268 EKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGK-PVLASTKGG--ITEFVLEGITGYHLAEPMTSDSIISDINRTLAD 344 (380)
T ss_pred HHHHHHHHhCCEEEeCCCCccccccHHHHHHHcCC-CEEEeCCCC--cHhhcccCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 3567889999999999864 544567999999995 999988532 335443233333 4556666665555543 344
Q ss_pred HHHHHHHHHHH-HHhhhccccC
Q 048582 502 RQYIRMHRRVV-QVRRHFEFNS 522 (555)
Q Consensus 502 ~~i~~Mrr~l~-~v~~hf~y~~ 522 (555)
.+..+|.++.+ .+.++|.|..
T Consensus 345 ~~~~~~~~~ar~~~~~~fsw~~ 366 (380)
T PRK15484 345 PELTQIAEQAKDFVFSKYSWEG 366 (380)
T ss_pred HHHHHHHHHHHHHHHHhCCHHH
Confidence 45677888877 4678888864
No 32
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=95.38 E-value=0.17 Score=51.48 Aligned_cols=92 Identities=16% Similarity=0.151 Sum_probs=62.7
Q ss_pred ccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhHHHHHhcC---CH
Q 048582 425 VSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSILTSI---SP 501 (555)
Q Consensus 425 ~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~sI---s~ 501 (555)
.+..+.|+.+.+.++|...+-....++|||.+|| |||.+|.- ...+++.= ....++..+..++.+.+..+ ++
T Consensus 254 ~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~-PvI~~~~~--~~~e~i~~--~g~~~~~~~~~~~~~~i~~ll~~~~ 328 (360)
T cd04951 254 DDIAAYYNAADLFVLSSAWEGFGLVVAEAMACEL-PVVATDAG--GVREVVGD--SGLIVPISDPEALANKIDEILKMSG 328 (360)
T ss_pred ccHHHHHHhhceEEecccccCCChHHHHHHHcCC-CEEEecCC--ChhhEecC--CceEeCCCCHHHHHHHHHHHHhCCH
Confidence 3567889999999999887766778999999999 88888742 22333322 34455667777666666554 45
Q ss_pred HHHHHHHHHHHHHhhhcccc
Q 048582 502 RQYIRMHRRVVQVRRHFEFN 521 (555)
Q Consensus 502 ~~i~~Mrr~l~~v~~hf~y~ 521 (555)
+....|.+.-..+.+.|.|.
T Consensus 329 ~~~~~~~~~~~~~~~~~s~~ 348 (360)
T cd04951 329 EERDIIGARRERIVKKFSIN 348 (360)
T ss_pred HHHHHHHHHHHHHHHhcCHH
Confidence 55555665544567777764
No 33
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=95.32 E-value=0.13 Score=52.21 Aligned_cols=104 Identities=15% Similarity=0.151 Sum_probs=68.9
Q ss_pred CeEEeeecCCcccHHHhcccccEEeecCC--CCCCCccHHHHHHhCCeeEEeeCCccCCCCCCC-CCCceEEEecCCChh
Q 048582 414 DIRVHKYLPKGVSYYEMMRKSKYCLCPSG--YEVASPRVVEAIYTGCVPVLISEHYVPPFSDVL-NWKSFSVALSTRDIP 490 (555)
Q Consensus 414 dv~v~~~~p~~~~y~~~l~~S~FCL~P~G--~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvL-DW~~fSV~Ipe~di~ 490 (555)
.+.+.++.+ ..+..+.++.+..|++|.- .+.....++|||.+|| |||.+|.-..+ +.+ +.......++..|..
T Consensus 245 ~V~~~g~v~-~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~-Pvi~~~~~~~~--~~i~~~~~~g~~~~~~d~~ 320 (357)
T cd03795 245 RVRFLGRLD-DEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGK-PVISTEIGTGG--SYVNLHGVTGLVVPPGDPA 320 (357)
T ss_pred eEEEcCCCC-HHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCC-CEEecCCCCch--hHHhhCCCceEEeCCCCHH
Confidence 344444332 3457789999999998853 2333456999999987 88887743222 222 235667777778877
Q ss_pred hHHHHHhcC--CHHHHHHHHHHHHHH-hhhcccc
Q 048582 491 NLKSILTSI--SPRQYIRMHRRVVQV-RRHFEFN 521 (555)
Q Consensus 491 ~L~~iL~sI--s~~~i~~Mrr~l~~v-~~hf~y~ 521 (555)
++.+.+..+ .++++.+|+++.++. .++|.|.
T Consensus 321 ~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~ 354 (357)
T cd03795 321 ALAEAIRRLLEDPELRERLGEAARERAEEEFTAD 354 (357)
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHhcchH
Confidence 666666554 577888999998864 5666653
No 34
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=95.26 E-value=0.049 Score=54.46 Aligned_cols=93 Identities=12% Similarity=0.138 Sum_probs=65.6
Q ss_pred ccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhHHHHHhcC--CHH
Q 048582 425 VSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSILTSI--SPR 502 (555)
Q Consensus 425 ~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~sI--s~~ 502 (555)
.+..+.|+.+.++++|...+-.+.-++|||.+|| |||.++.-. ..+.++= ..+.++..+..++.+.+..+ .++
T Consensus 260 ~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~-PvI~~~~~~--~~e~~~~--~g~~~~~~~~~~l~~~i~~l~~~~~ 334 (365)
T cd03807 260 SDVPALLNALDVFVLSSLSEGFPNVLLEAMACGL-PVVATDVGD--NAELVGD--TGFLVPPGDPEALAEAIEALLADPA 334 (365)
T ss_pred ccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCC-CEEEcCCCC--hHHHhhc--CCEEeCCCCHHHHHHHHHHHHhChH
Confidence 4678899999999999888766788999999997 888876422 2233322 55667777777666665554 346
Q ss_pred HHHHHHHHHHH-HhhhccccC
Q 048582 503 QYIRMHRRVVQ-VRRHFEFNS 522 (555)
Q Consensus 503 ~i~~Mrr~l~~-v~~hf~y~~ 522 (555)
++.+|.++.++ +.++|.|..
T Consensus 335 ~~~~~~~~~~~~~~~~~s~~~ 355 (365)
T cd03807 335 LRQALGEAARERIEENFSIEA 355 (365)
T ss_pred HHHHHHHHHHHHHHHhCCHHH
Confidence 77777777764 567777753
No 35
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=95.25 E-value=0.15 Score=53.31 Aligned_cols=103 Identities=13% Similarity=0.094 Sum_probs=67.1
Q ss_pred CeEEeeecCCcccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhHH
Q 048582 414 DIRVHKYLPKGVSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLK 493 (555)
Q Consensus 414 dv~v~~~~p~~~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~ 493 (555)
.+.+.++.+ .....+.|+.+.++++|...+....-++|||.+|| |||.+|.-- ..+.+.-..-.+.++. +..++.
T Consensus 281 ~V~f~g~~~-~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~-PvI~s~~~~--~~e~i~~~~~g~~~~~-~~~~~a 355 (392)
T cd03805 281 QVIFLPSIS-DSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGK-PVIACNSGG--PLETVVDGETGFLCEP-TPEEFA 355 (392)
T ss_pred eEEEeCCCC-hHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCC-CEEEECCCC--cHHHhccCCceEEeCC-CHHHHH
Confidence 355544433 33557889999999998877766677899999996 888887422 2244433333444554 665554
Q ss_pred HHHhcC--CHHHHHHHHHHHHH-Hhhhcccc
Q 048582 494 SILTSI--SPRQYIRMHRRVVQ-VRRHFEFN 521 (555)
Q Consensus 494 ~iL~sI--s~~~i~~Mrr~l~~-v~~hf~y~ 521 (555)
+.+..+ .++...+|+++.++ +.++|.|.
T Consensus 356 ~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~ 386 (392)
T cd03805 356 EAMLKLANDPDLADRMGAAGRKRVKEKFSTE 386 (392)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHhcCHH
Confidence 444443 34568888888775 56788774
No 36
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=95.07 E-value=0.11 Score=54.16 Aligned_cols=95 Identities=19% Similarity=0.265 Sum_probs=67.3
Q ss_pred ccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCCh------hhHHHHHhc
Q 048582 425 VSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDI------PNLKSILTS 498 (555)
Q Consensus 425 ~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di------~~L~~iL~s 498 (555)
.+..+.|..+..+++|.-++....-++|||.+|| |||.+|.- ...+++.=....+.++..+. ..+.+.|..
T Consensus 272 ~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~-PvI~s~~~--~~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~ 348 (388)
T TIGR02149 272 EELVELLSNAEVFVCPSIYEPLGIVNLEAMACGT-PVVASATG--GIPEVVVDGETGFLVPPDNSDADGFQAELAKAINI 348 (388)
T ss_pred HHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCC-CEEEeCCC--CHHHHhhCCCceEEcCCCCCcccchHHHHHHHHHH
Confidence 4578889999999999866655667899999999 99998853 23455544445666666665 555555544
Q ss_pred C--CHHHHHHHHHHHHH-HhhhccccC
Q 048582 499 I--SPRQYIRMHRRVVQ-VRRHFEFNS 522 (555)
Q Consensus 499 I--s~~~i~~Mrr~l~~-v~~hf~y~~ 522 (555)
+ .+++..+|.++.++ +.++|.|..
T Consensus 349 l~~~~~~~~~~~~~a~~~~~~~~s~~~ 375 (388)
T TIGR02149 349 LLADPELAKKMGIAGRKRAEEEFSWGS 375 (388)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 3 57777888888775 567787753
No 37
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=94.99 E-value=0.036 Score=58.08 Aligned_cols=89 Identities=15% Similarity=0.244 Sum_probs=66.4
Q ss_pred ccHHHhcccccEEeecCCCC-----------CCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhHH
Q 048582 425 VSYYEMMRKSKYCLCPSGYE-----------VASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLK 493 (555)
Q Consensus 425 ~~y~~~l~~S~FCL~P~G~~-----------~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~ 493 (555)
.+..+.|.. .|+|++.+++ ...-.++++|++|+ |||.++.-.++ +++.=....+.++ ++.++.
T Consensus 218 eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~-PVI~~~~~~~~--~~V~~~~~G~~v~--~~~el~ 291 (333)
T PRK09814 218 EELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGL-PVIVWSKAAIA--DFIVENGLGFVVD--SLEELP 291 (333)
T ss_pred HHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCC-CEEECCCccHH--HHHHhCCceEEeC--CHHHHH
Confidence 345556665 8888877651 12345899999998 99998764333 5555556666666 677899
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhhhcc
Q 048582 494 SILTSISPRQYIRMHRRVVQVRRHFE 519 (555)
Q Consensus 494 ~iL~sIs~~~i~~Mrr~l~~v~~hf~ 519 (555)
+.|..++++++.+|+++++++.+.+-
T Consensus 292 ~~l~~~~~~~~~~m~~n~~~~~~~~~ 317 (333)
T PRK09814 292 EIIDNITEEEYQEMVENVKKISKLLR 317 (333)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988754
No 38
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=94.65 E-value=0.063 Score=53.51 Aligned_cols=94 Identities=13% Similarity=0.079 Sum_probs=64.9
Q ss_pred ccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhHHHHHhcCC-HHH
Q 048582 425 VSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSILTSIS-PRQ 503 (555)
Q Consensus 425 ~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~sIs-~~~ 503 (555)
.+..+.+.++.++++|...+.....++||+.+|| |||.++.-. ..+.+.-....+.+...+..++.+.|..+- +.+
T Consensus 270 ~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~-pvI~~~~~~--~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~ 346 (377)
T cd03798 270 EEVPAYYAAADVFVLPSLREGFGLVLLEAMACGL-PVVATDVGG--IPEIITDGENGLLVPPGDPEALAEAILRLLADPW 346 (377)
T ss_pred HHHHHHHHhcCeeecchhhccCChHHHHHHhcCC-CEEEecCCC--hHHHhcCCcceeEECCCCHHHHHHHHHHHhcCcH
Confidence 4577899999999999877767788999999999 888876432 234455555567778888876666655542 222
Q ss_pred HHHHHHHHHHHhhhcccc
Q 048582 504 YIRMHRRVVQVRRHFEFN 521 (555)
Q Consensus 504 i~~Mrr~l~~v~~hf~y~ 521 (555)
....++....+.++|.|.
T Consensus 347 ~~~~~~~~~~~~~~~s~~ 364 (377)
T cd03798 347 LRLGRAARRRVAERFSWE 364 (377)
T ss_pred HHHhHHHHHHHHHHhhHH
Confidence 234445555677787764
No 39
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=94.58 E-value=0.14 Score=53.08 Aligned_cols=81 Identities=12% Similarity=0.148 Sum_probs=54.6
Q ss_pred CeEEeeecCCcccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhHH
Q 048582 414 DIRVHKYLPKGVSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLK 493 (555)
Q Consensus 414 dv~v~~~~p~~~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~ 493 (555)
.+.+..+.+ ..+..+.|+.+..+++|.- +.....++|||++|| |||.++.-- ..+++.=....+.++..+..++.
T Consensus 243 ~V~~~g~~~-~~~~~~~~~~ad~~v~ps~-e~~g~~~~Eama~G~-Pvi~~~~~~--~~e~i~~~~~G~~~~~~~~~~la 317 (351)
T cd03804 243 NVTFLGRVS-DEELRDLYARARAFLFPAE-EDFGIVPVEAMASGT-PVIAYGKGG--ALETVIDGVTGILFEEQTVESLA 317 (351)
T ss_pred CEEEecCCC-HHHHHHHHHhCCEEEECCc-CCCCchHHHHHHcCC-CEEEeCCCC--CcceeeCCCCEEEeCCCCHHHHH
Confidence 355444332 2357889999999998865 434556899999998 999987532 23444434567778877777666
Q ss_pred HHHhcC
Q 048582 494 SILTSI 499 (555)
Q Consensus 494 ~iL~sI 499 (555)
+.|..+
T Consensus 318 ~~i~~l 323 (351)
T cd03804 318 AAVERF 323 (351)
T ss_pred HHHHHH
Confidence 655554
No 40
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=94.04 E-value=0.23 Score=52.09 Aligned_cols=125 Identities=12% Similarity=0.074 Sum_probs=75.5
Q ss_pred cEEEEEeccCCCCchhHHHHhhhc--CCCCeEEeeecCCc-ccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEe
Q 048582 387 SILAFFAGGVHGPIRPVLLEHWEN--KDEDIRVHKYLPKG-VSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLI 463 (555)
Q Consensus 387 ~~L~fFaG~~~g~iR~~Ll~~~~~--~d~dv~v~~~~p~~-~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIi 463 (555)
++-+.+.|. |.-+..+.+.-+. -++.+.+.++.... ..+.+.++.+..+++|..++-...-++|||++|| |||.
T Consensus 210 ~~~l~ivG~--g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~-Pvv~ 286 (359)
T PRK09922 210 EWQLHIIGD--GSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGI-PCIS 286 (359)
T ss_pred CeEEEEEeC--CccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHHcCC-CEEE
Confidence 355666774 3445555433322 23346555543322 2456678889999999877766788999999996 9988
Q ss_pred eCCccCCCCCCCCCCceEEEecCCChhhHHHHHhcCCHHH----HHHHHHHHHHHh
Q 048582 464 SEHYVPPFSDVLNWKSFSVALSTRDIPNLKSILTSISPRQ----YIRMHRRVVQVR 515 (555)
Q Consensus 464 sD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~sIs~~~----i~~Mrr~l~~v~ 515 (555)
+|..-- ..+++.=..-.+.++..|+.++.+.+..+-... ...+++++++..
T Consensus 287 s~~~~g-~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~ 341 (359)
T PRK09922 287 SDCMSG-PRDIIKPGLNGELYTPGNIDEFVGKLNKVISGEVKYQHDAIPNSIERFY 341 (359)
T ss_pred eCCCCC-hHHHccCCCceEEECCCCHHHHHHHHHHHHhCcccCCHHHHHHHHHHhh
Confidence 882221 235554455566678888887776666652222 344555544443
No 41
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=94.02 E-value=0.4 Score=52.03 Aligned_cols=93 Identities=15% Similarity=0.153 Sum_probs=61.3
Q ss_pred ccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCC---CCceEEEecCCChhhHHHHHhc---
Q 048582 425 VSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLN---WKSFSVALSTRDIPNLKSILTS--- 498 (555)
Q Consensus 425 ~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLD---W~~fSV~Ipe~di~~L~~iL~s--- 498 (555)
.+..+.|+.|..++.|.-++....-++|||++||.|| .++.- -|.++++. -..-.+.+ .+..++.+.+..
T Consensus 316 ~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvI-a~~~g-gp~~~iv~~~~~g~~G~l~--~d~~~la~ai~~ll~ 391 (419)
T cd03806 316 EELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPL-AHASG-GPLLDIVVPWDGGPTGFLA--STAEEYAEAIEKILS 391 (419)
T ss_pred HHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEE-EEcCC-CCchheeeccCCCCceEEe--CCHHHHHHHHHHHHh
Confidence 4678899999999988766666778999999999555 55532 35566664 22233333 255444443333
Q ss_pred CCHHHHHHHHHHHHHHhhhcccc
Q 048582 499 ISPRQYIRMHRRVVQVRRHFEFN 521 (555)
Q Consensus 499 Is~~~i~~Mrr~l~~v~~hf~y~ 521 (555)
.++++...|++..+++.++|.+.
T Consensus 392 ~~~~~~~~~~~~~~~~~~~fs~~ 414 (419)
T cd03806 392 LSEEERLRIRRAARSSVKRFSDE 414 (419)
T ss_pred CCHHHHHHHHHHHHHHHHhhCHH
Confidence 25666667888888888888764
No 42
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=93.95 E-value=0.46 Score=48.49 Aligned_cols=128 Identities=20% Similarity=0.279 Sum_probs=73.2
Q ss_pred cEEEEEeccCC--CCchhHHHHhhhcCCCCeEEeeecCCcccHHHhcccccEEeecCCC-CCCCccHHHHHHhCCeeEEe
Q 048582 387 SILAFFAGGVH--GPIRPVLLEHWENKDEDIRVHKYLPKGVSYYEMMRKSKYCLCPSGY-EVASPRVVEAIYTGCVPVLI 463 (555)
Q Consensus 387 ~~L~fFaG~~~--g~iR~~Ll~~~~~~d~dv~v~~~~p~~~~y~~~l~~S~FCL~P~G~-~~~s~Rl~EAL~aGCIPVIi 463 (555)
++-+.+.|... +.....+.+.. +..+.+.+.++.+ ..+..+.+..+..++.|.-. +-...-++|||.+|| |||.
T Consensus 221 ~~~l~ivG~~~~~~~~~~~~~~~~-~~~~~V~~~g~~~-~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~-PvI~ 297 (363)
T cd04955 221 GKKLVIVGNADHNTPYGKLLKEKA-AADPRIIFVGPIY-DQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGC-PVLA 297 (363)
T ss_pred CceEEEEcCCCCcchHHHHHHHHh-CCCCcEEEccccC-hHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCC-CEEE
Confidence 34456666532 22333333222 2233455554433 23567888888888888665 545667999999999 8888
Q ss_pred eCCccCCCCCCCCCCceEEEecCCC-hhhHHHHHhcCCHHHHHHHHHHHHHH-hhhccccC
Q 048582 464 SEHYVPPFSDVLNWKSFSVALSTRD-IPNLKSILTSISPRQYIRMHRRVVQV-RRHFEFNS 522 (555)
Q Consensus 464 sD~~~LPF~dvLDW~~fSV~Ipe~d-i~~L~~iL~sIs~~~i~~Mrr~l~~v-~~hf~y~~ 522 (555)
++.- +..+++.-. ...++..+ +.+....|.. .++.+.+|.++.++. .++|.|..
T Consensus 298 s~~~--~~~e~~~~~--g~~~~~~~~l~~~i~~l~~-~~~~~~~~~~~~~~~~~~~fs~~~ 353 (363)
T cd04955 298 SDNP--FNREVLGDK--AIYFKVGDDLASLLEELEA-DPEEVSAMAKAARERIREKYTWEK 353 (363)
T ss_pred ecCC--ccceeecCC--eeEecCchHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhCCHHH
Confidence 8743 334555432 33344444 4433333333 246677888877754 45677753
No 43
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.43 E-value=0.22 Score=51.50 Aligned_cols=55 Identities=22% Similarity=0.259 Sum_probs=37.4
Q ss_pred hhHHhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCChhHhhHHH
Q 048582 158 MKAERKRAVTKLEKLEAGLQRARVAIKEASIGNQTQDPDFVPLGPMYWDSKAFHRSY 214 (555)
Q Consensus 158 ~~~~~~~~~~~l~~l~~~l~~A~~~i~ea~~~~~~~~~~~lp~~~iy~~~~~F~~Sy 214 (555)
-++|+.+++.||+|-|+||.+-+.++..+-. ..+..+..|+....---+||+++.
T Consensus 65 kq~eL~~rqeEL~Rke~ELdRREr~~a~~g~--~~~~nNWPPLP~~~pv~PcfyqD~ 119 (313)
T KOG3088|consen 65 KQAELLKKQEELRRKEQELDRRERALARAGI--VIRENNWPPLPSFIPVFPCFYQDI 119 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhccC--cccccCCCCCCCCCCccccccccc
Confidence 4678999999999999999999999888632 244555544443333334555554
No 44
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=93.23 E-value=0.5 Score=48.26 Aligned_cols=104 Identities=13% Similarity=0.126 Sum_probs=62.2
Q ss_pred cEEEEEeccCCCCchhHHHHhhhcC--CCCeEEeeecCCcccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEee
Q 048582 387 SILAFFAGGVHGPIRPVLLEHWENK--DEDIRVHKYLPKGVSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLIS 464 (555)
Q Consensus 387 ~~L~fFaG~~~g~iR~~Ll~~~~~~--d~dv~v~~~~p~~~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIis 464 (555)
++-+.+.|. |+....+.+..+.. .+.+....+ ..+..+.++.+.++++|.-.+....-++|||.+|| |||.+
T Consensus 223 ~~~l~ivG~--g~~~~~~~~~~~~~~~~~~v~~~g~---~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~-PvI~s 296 (358)
T cd03812 223 NAKLLLVGD--GELEEEIKKKVKELGLEDKVIFLGV---RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGL-PCILS 296 (358)
T ss_pred CeEEEEEeC--CchHHHHHHHHHhcCCCCcEEEecc---cCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCC-CEEEE
Confidence 455666674 33344343333221 223433322 34677899999999999877767888999999999 88887
Q ss_pred CCccCCCCCCCCCCceEEEecCCChhhHHHHHhcC
Q 048582 465 EHYVPPFSDVLNWKSFSVALSTRDIPNLKSILTSI 499 (555)
Q Consensus 465 D~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~sI 499 (555)
|.-. ..+++.- .....+...+..++.+.+..+
T Consensus 297 ~~~~--~~~~i~~-~~~~~~~~~~~~~~a~~i~~l 328 (358)
T cd03812 297 DTIT--KEVDLTD-LVKFLSLDESPEIWAEEILKL 328 (358)
T ss_pred cCCc--hhhhhcc-CccEEeCCCCHHHHHHHHHHH
Confidence 7432 2333333 334444555555555555544
No 45
>PRK00654 glgA glycogen synthase; Provisional
Probab=93.21 E-value=0.53 Score=51.71 Aligned_cols=91 Identities=14% Similarity=0.300 Sum_probs=61.6
Q ss_pred HHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCC-CCC-----ceEEEecCCChhhHHHHHhcC-
Q 048582 427 YYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVL-NWK-----SFSVALSTRDIPNLKSILTSI- 499 (555)
Q Consensus 427 y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvL-DW~-----~fSV~Ipe~di~~L~~iL~sI- 499 (555)
....++.+.+++.|.=++....-..|||++||+||+ ++--- ..|.+ |.. .-.+.++..+...|.+.|..+
T Consensus 350 ~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~-~~~gG--~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l 426 (466)
T PRK00654 350 AHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIV-RRTGG--LADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRAL 426 (466)
T ss_pred HHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEE-eCCCC--ccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHH
Confidence 457889999999998888777889999999997766 44211 22332 331 446777888887766655543
Q ss_pred ----CHHHHHHHHHHHHHHhhhccccC
Q 048582 500 ----SPRQYIRMHRRVVQVRRHFEFNS 522 (555)
Q Consensus 500 ----s~~~i~~Mrr~l~~v~~hf~y~~ 522 (555)
.++...+|+++.. .++|.|..
T Consensus 427 ~~~~~~~~~~~~~~~~~--~~~fsw~~ 451 (466)
T PRK00654 427 ELYRQPPLWRALQRQAM--AQDFSWDK 451 (466)
T ss_pred HHhcCHHHHHHHHHHHh--ccCCChHH
Confidence 3455666766553 36777754
No 46
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=93.17 E-value=0.13 Score=58.41 Aligned_cols=110 Identities=18% Similarity=0.290 Sum_probs=72.0
Q ss_pred cccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCC-C-CCCC-CCCceEEEecC-------CChhhHH
Q 048582 424 GVSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPP-F-SDVL-NWKSFSVALST-------RDIPNLK 493 (555)
Q Consensus 424 ~~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LP-F-~dvL-DW~~fSV~Ipe-------~di~~L~ 493 (555)
+.+|.+.++.+.-++.|.-++.+..-..||+++|+ |||.++.--++ | .+++ +-....+.|.. ..+.+|.
T Consensus 465 g~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~-PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La 543 (590)
T cd03793 465 GLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGI-PSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSPDESVQQLT 543 (590)
T ss_pred CcchHHHhhhceEEEeccccCCCCcHHHHHHHcCC-CEEEccCcchhhhhHHHhccCCCceEEEecCCccchHHHHHHHH
Confidence 35799999999999999988888889999999997 99999864331 0 1333 33356666652 2344454
Q ss_pred HHHhcC---CHHHHHHHHHHHHHHhhhccccCCCCCc-cHHHHHH
Q 048582 494 SILTSI---SPRQYIRMHRRVVQVRRHFEFNSPPKRF-DVFHMIL 534 (555)
Q Consensus 494 ~iL~sI---s~~~i~~Mrr~l~~v~~hf~y~~p~~~~-DaF~mil 534 (555)
+.|..+ +..+....|....+..+.|.|..-...| .|.+++|
T Consensus 544 ~~m~~~~~~~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~~Al 588 (590)
T cd03793 544 QYMYEFCQLSRRQRIIQRNRTERLSDLLDWRNLGRYYRKARQLAL 588 (590)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 444443 3444444444444888999987643332 4555544
No 47
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=93.14 E-value=0.62 Score=50.32 Aligned_cols=120 Identities=14% Similarity=0.306 Sum_probs=74.4
Q ss_pred cEEEEEeccCCCCchhHHHHhhhcCC-CCeEEe-eecCCcccHHHhcccccEEeecC----CCCCCCccHHHHHHhCCee
Q 048582 387 SILAFFAGGVHGPIRPVLLEHWENKD-EDIRVH-KYLPKGVSYYEMMRKSKYCLCPS----GYEVASPRVVEAIYTGCVP 460 (555)
Q Consensus 387 ~~L~fFaG~~~g~iR~~Ll~~~~~~d-~dv~v~-~~~p~~~~y~~~l~~S~FCL~P~----G~~~~s~Rl~EAL~aGCIP 460 (555)
++.+.+.|. |..+..|.+..+... .++... .+.+ ..++.+.|..+..+++|. |.+ ...-++|||++|+ |
T Consensus 269 ~i~l~ivG~--G~~~~~l~~~~~~~~l~~~~~~~g~~~-~~~~~~~l~~aDv~v~~~~~~~~~~-~p~~~~Eama~G~-P 343 (415)
T cd03816 269 KLLCIITGK--GPLKEKYLERIKELKLKKVTIRTPWLS-AEDYPKLLASADLGVSLHTSSSGLD-LPMKVVDMFGCGL-P 343 (415)
T ss_pred CEEEEEEec--CccHHHHHHHHHHcCCCcEEEEcCcCC-HHHHHHHHHhCCEEEEccccccccC-CcHHHHHHHHcCC-C
Confidence 467778884 556776666555332 233332 2222 356788999999988642 332 2567999999999 9
Q ss_pred EEeeCCccCCCCCCCCCCceEEEecCCChhhHHHHHhcC-----CHHHHHHHHHHHHHHh
Q 048582 461 VLISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSILTSI-----SPRQYIRMHRRVVQVR 515 (555)
Q Consensus 461 VIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~sI-----s~~~i~~Mrr~l~~v~ 515 (555)
||.++.- -..|++.=..-.+.++ +..+|.+.|..+ ++++..+|.++.++..
T Consensus 344 VI~s~~~--~~~eiv~~~~~G~lv~--d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 344 VCALDFK--CIDELVKHGENGLVFG--DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred EEEeCCC--CHHHHhcCCCCEEEEC--CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 9998753 2335554333344443 666555544443 2678888988888765
No 48
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=93.13 E-value=0.26 Score=51.32 Aligned_cols=93 Identities=18% Similarity=0.275 Sum_probs=68.0
Q ss_pred cHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCC-ccCCCCCCCCCCceEEEecCCChhhHHHHHhcC--CHH
Q 048582 426 SYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEH-YVPPFSDVLNWKSFSVALSTRDIPNLKSILTSI--SPR 502 (555)
Q Consensus 426 ~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~-~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~sI--s~~ 502 (555)
+..+.++.+..++.|.-.+.....+.|||.+|| |||..|- +.. .+.+.=....+.++..+..++.+.|..+ .++
T Consensus 271 ~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~-PvI~~~~~~g~--~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~~~ 347 (372)
T cd04949 271 DLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGL-PVISYDVNYGP--SEIIEDGENGYLVPKGDIEALAEAIIELLNDPK 347 (372)
T ss_pred CHHHHHhhhhEEEecccccccChHHHHHHhCCC-CEEEecCCCCc--HHHcccCCCceEeCCCcHHHHHHHHHHHHcCHH
Confidence 567789999999998866555677999999999 8888763 222 2444445566777877877666655554 467
Q ss_pred HHHHHHHHHHHHhhhcccc
Q 048582 503 QYIRMHRRVVQVRRHFEFN 521 (555)
Q Consensus 503 ~i~~Mrr~l~~v~~hf~y~ 521 (555)
.+.+|+++.++..+.|.|.
T Consensus 348 ~~~~~~~~a~~~~~~~s~~ 366 (372)
T cd04949 348 LLQKFSEAAYENAERYSEE 366 (372)
T ss_pred HHHHHHHHHHHHHHHhhHH
Confidence 8899999998888887764
No 49
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=93.09 E-value=0.53 Score=50.11 Aligned_cols=131 Identities=18% Similarity=0.173 Sum_probs=74.5
Q ss_pred EEEEEeccCCCCchhHHHHhhhcC--CCCeEEeeecCCcccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeC
Q 048582 388 ILAFFAGGVHGPIRPVLLEHWENK--DEDIRVHKYLPKGVSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISE 465 (555)
Q Consensus 388 ~L~fFaG~~~g~iR~~Ll~~~~~~--d~dv~v~~~~p~~~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD 465 (555)
+-+.++|. |..+..+.+...+. ++.+...++.+ ..+..+.++.+..++.|.-.+.....++|||++|| |||.++
T Consensus 225 ~~l~i~G~--g~~~~~l~~~~~~~~l~~~v~~~G~~~-~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~-PVI~s~ 300 (398)
T cd03796 225 VRFIIGGD--GPKRILLEEMREKYNLQDRVELLGAVP-HERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGL-LVVSTR 300 (398)
T ss_pred EEEEEEeC--CchHHHHHHHHHHhCCCCeEEEeCCCC-HHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCC-CEEECC
Confidence 44556664 33344333333221 22344443332 34678899999999988766555678999999999 888887
Q ss_pred CccCCCCCCCCCCceEEEecCCChhhHHHHHhcC---CHHHHHHHHHHHHHHhhhccccCCCCC
Q 048582 466 HYVPPFSDVLNWKSFSVALSTRDIPNLKSILTSI---SPRQYIRMHRRVVQVRRHFEFNSPPKR 526 (555)
Q Consensus 466 ~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~sI---s~~~i~~Mrr~l~~v~~hf~y~~p~~~ 526 (555)
.-- ..|++.-. ..+.++. +..++.+.|..+ ..++...+++...++.++|.|....++
T Consensus 301 ~gg--~~e~i~~~-~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~fs~~~~~~~ 360 (398)
T cd03796 301 VGG--IPEVLPPD-MILLAEP-DVESIVRKLEEAISILRTGKHDPWSFHNRVKKMYSWEDVAKR 360 (398)
T ss_pred CCC--chhheeCC-ceeecCC-CHHHHHHHHHHHHhChhhhhhHHHHHHHHHHhhCCHHHHHHH
Confidence 543 33555433 2344443 555544444332 222323344555678888888754443
No 50
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=93.07 E-value=0.88 Score=47.75 Aligned_cols=104 Identities=22% Similarity=0.219 Sum_probs=66.9
Q ss_pred CeEEeeecC-CcccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCC-hh-
Q 048582 414 DIRVHKYLP-KGVSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRD-IP- 490 (555)
Q Consensus 414 dv~v~~~~p-~~~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~d-i~- 490 (555)
++.+....+ ...+..+.++.+..++.|..++-...-++|||++|+ |||.++.--++ +++.-....+.++..+ +.
T Consensus 253 ~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~-Pvv~s~~~~~~--~~i~~~~~g~~~~~~~~~a~ 329 (372)
T cd03792 253 DIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGK-PVIAGPVGGIP--LQIEDGETGFLVDTVEEAAV 329 (372)
T ss_pred CeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCC-CEEEcCCCCch--hhcccCCceEEeCCcHHHHH
Confidence 454443322 334667889999999999877766778999999996 99998854333 4443333334443222 21
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHH-HhhhccccC
Q 048582 491 NLKSILTSISPRQYIRMHRRVVQ-VRRHFEFNS 522 (555)
Q Consensus 491 ~L~~iL~sIs~~~i~~Mrr~l~~-v~~hf~y~~ 522 (555)
.|..+|. +++...+|.++.++ +.++|.|..
T Consensus 330 ~i~~ll~--~~~~~~~~~~~a~~~~~~~~s~~~ 360 (372)
T cd03792 330 RILYLLR--DPELRRKMGANAREHVRENFLITR 360 (372)
T ss_pred HHHHHHc--CHHHHHHHHHHHHHHHHHHcCHHH
Confidence 2333333 46778899888887 567888754
No 51
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=93.06 E-value=0.49 Score=51.84 Aligned_cols=92 Identities=15% Similarity=0.263 Sum_probs=62.1
Q ss_pred cHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCC-CCC-----ceEEEecCCChhhHHHHHhcC
Q 048582 426 SYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVL-NWK-----SFSVALSTRDIPNLKSILTSI 499 (555)
Q Consensus 426 ~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvL-DW~-----~fSV~Ipe~di~~L~~iL~sI 499 (555)
...+.++.+.++++|.-++....-..|||++||.| |.++.-- ..|++ |.. ...+.++..+..+|.+.|..+
T Consensus 358 ~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pv-I~s~~gg--~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~ 434 (473)
T TIGR02095 358 LAHLIYAGADFILMPSRFEPCGLTQLYAMRYGTVP-IVRRTGG--LADTVVDGDPEAESGTGFLFEEYDPGALLAALSRA 434 (473)
T ss_pred HHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCe-EEccCCC--ccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHH
Confidence 35678999999999998887778899999999955 4555322 23333 321 556777888877666655443
Q ss_pred ------CHHHHHHHHHHHHHHhhhccccC
Q 048582 500 ------SPRQYIRMHRRVVQVRRHFEFNS 522 (555)
Q Consensus 500 ------s~~~i~~Mrr~l~~v~~hf~y~~ 522 (555)
.++...+|.++.. .+.|.|..
T Consensus 435 l~~~~~~~~~~~~~~~~~~--~~~fsw~~ 461 (473)
T TIGR02095 435 LRLYRQDPSLWEALQKNAM--SQDFSWDK 461 (473)
T ss_pred HHHHhcCHHHHHHHHHHHh--ccCCCcHH
Confidence 4556677766653 45677754
No 52
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=92.72 E-value=0.29 Score=49.45 Aligned_cols=99 Identities=16% Similarity=0.200 Sum_probs=58.7
Q ss_pred CeEEeeecCCcccHHHhcccccEEeecCCC-CCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhH
Q 048582 414 DIRVHKYLPKGVSYYEMMRKSKYCLCPSGY-EVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNL 492 (555)
Q Consensus 414 dv~v~~~~p~~~~y~~~l~~S~FCL~P~G~-~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L 492 (555)
.+.+.++.+ ..+..+.|+.+.+++.|.-. +.....++|||++|| |||.+|.-- ..++++=..-.+.++. +.++
T Consensus 225 ~v~~~G~~~-~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~-PvI~~~~~~--~~e~i~~~~~g~l~~~--~~~l 298 (335)
T cd03802 225 DIEYLGEVG-GAEKAELLGNARALLFPILWEEPFGLVMIEAMACGT-PVIAFRRGA--VPEVVEDGVTGFLVDS--VEEL 298 (335)
T ss_pred cEEEeCCCC-HHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCC-CEEEeCCCC--chhheeCCCcEEEeCC--HHHH
Confidence 344444332 23567889999999998753 444567999999998 999998633 3355544333334443 6666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhhhcccc
Q 048582 493 KSILTSISPRQYIRMHRRVVQVRRHFEFN 521 (555)
Q Consensus 493 ~~iL~sIs~~~i~~Mrr~l~~v~~hf~y~ 521 (555)
.+.|+.+.+....+.| +.+.++|.|.
T Consensus 299 ~~~l~~l~~~~~~~~~---~~~~~~~s~~ 324 (335)
T cd03802 299 AAAVARADRLDRAACR---RRAERRFSAA 324 (335)
T ss_pred HHHHHHHhccHHHHHH---HHHHHhCCHH
Confidence 6666554222212222 2345666653
No 53
>PRK14098 glycogen synthase; Provisional
Probab=92.43 E-value=0.77 Score=51.16 Aligned_cols=94 Identities=13% Similarity=0.123 Sum_probs=63.0
Q ss_pred cHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCC-C---CCceEEEecCCChhhHHHHHhcC--
Q 048582 426 SYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVL-N---WKSFSVALSTRDIPNLKSILTSI-- 499 (555)
Q Consensus 426 ~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvL-D---W~~fSV~Ipe~di~~L~~iL~sI-- 499 (555)
...+.++.+.+++.|.-++....-..|||++||+||+....- + .|.+ | ...-.+.++..+...|.+.|..+
T Consensus 374 ~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GG-l--~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 374 FFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGG-I--VETIEEVSEDKGSGFIFHDYTPEALVAKLGEALA 450 (489)
T ss_pred HHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCC-C--ceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHH
Confidence 356789999999999988877788999999999998765321 1 1111 2 13345667888877666655431
Q ss_pred ---CHHHHHHHHHHHHHHhhhccccCCC
Q 048582 500 ---SPRQYIRMHRRVVQVRRHFEFNSPP 524 (555)
Q Consensus 500 ---s~~~i~~Mrr~l~~v~~hf~y~~p~ 524 (555)
.++++.+|+++. +.+.|.|....
T Consensus 451 ~~~~~~~~~~~~~~~--~~~~fsw~~~a 476 (489)
T PRK14098 451 LYHDEERWEELVLEA--MERDFSWKNSA 476 (489)
T ss_pred HHcCHHHHHHHHHHH--hcCCCChHHHH
Confidence 355666666543 45677776543
No 54
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=92.21 E-value=0.35 Score=52.56 Aligned_cols=94 Identities=19% Similarity=0.264 Sum_probs=65.0
Q ss_pred cHHHhcccc----cEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhHHHHHhcC--
Q 048582 426 SYYEMMRKS----KYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSILTSI-- 499 (555)
Q Consensus 426 ~y~~~l~~S----~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~sI-- 499 (555)
+..+.++.+ ..++.|.-++....-+.|||++|| |||.++.- ...|+++=..-.+.++..|...|.+.+..+
T Consensus 329 ~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~-PvV~s~~g--g~~eiv~~~~~G~lv~~~d~~~la~~i~~ll~ 405 (439)
T TIGR02472 329 DVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGL-PIVATDDG--GPRDIIANCRNGLLVDVLDLEAIASALEDALS 405 (439)
T ss_pred HHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCC-CEEEeCCC--CcHHHhcCCCcEEEeCCCCHHHHHHHHHHHHh
Confidence 344555544 455666655555667999999999 99999853 344666655667788888887766655543
Q ss_pred CHHHHHHHHHHHH-HHhhhccccC
Q 048582 500 SPRQYIRMHRRVV-QVRRHFEFNS 522 (555)
Q Consensus 500 s~~~i~~Mrr~l~-~v~~hf~y~~ 522 (555)
.+++..+|.++.+ .+.++|.|..
T Consensus 406 ~~~~~~~~~~~a~~~~~~~fsw~~ 429 (439)
T TIGR02472 406 DSSQWQLWSRNGIEGVRRHYSWDA 429 (439)
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHH
Confidence 4566777877776 4678888864
No 55
>PRK14099 glycogen synthase; Provisional
Probab=92.02 E-value=0.97 Score=50.32 Aligned_cols=95 Identities=19% Similarity=0.285 Sum_probs=64.1
Q ss_pred cHHHhc-ccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCC--------ceEEEecCCChhhHHHHH
Q 048582 426 SYYEMM-RKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWK--------SFSVALSTRDIPNLKSIL 496 (555)
Q Consensus 426 ~y~~~l-~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~--------~fSV~Ipe~di~~L~~iL 496 (555)
+....+ +.+.+.+.|.=++....-..|||++||+||+ ++.=-++ +-+.|.. .-.+.++..|...|.+.|
T Consensus 361 ~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVv-s~~GGl~-d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai 438 (485)
T PRK14099 361 ALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVV-ARVGGLA-DTVVDANEMAIATGVATGVQFSPVTADALAAAL 438 (485)
T ss_pred HHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEE-eCCCCcc-ceeecccccccccCCCceEEeCCCCHHHHHHHH
Confidence 345555 5689999998888888889999999999988 5421121 1123442 356777888887766665
Q ss_pred hc----C-CHHHHHHHHHHHHHHhhhccccCCC
Q 048582 497 TS----I-SPRQYIRMHRRVVQVRRHFEFNSPP 524 (555)
Q Consensus 497 ~s----I-s~~~i~~Mrr~l~~v~~hf~y~~p~ 524 (555)
.. + .++...+|+++.+ .+.|.|....
T Consensus 439 ~~a~~l~~d~~~~~~l~~~~~--~~~fSw~~~a 469 (485)
T PRK14099 439 RKTAALFADPVAWRRLQRNGM--TTDVSWRNPA 469 (485)
T ss_pred HHHHHHhcCHHHHHHHHHHhh--hhcCChHHHH
Confidence 53 2 4667788888765 4678886543
No 56
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=91.93 E-value=0.82 Score=49.75 Aligned_cols=92 Identities=15% Similarity=0.320 Sum_probs=59.8
Q ss_pred cHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCC-CCCC-----ceEEEecCCChhhHHHHHhcC
Q 048582 426 SYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDV-LNWK-----SFSVALSTRDIPNLKSILTSI 499 (555)
Q Consensus 426 ~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dv-LDW~-----~fSV~Ipe~di~~L~~iL~sI 499 (555)
...+.++.+.+++.|.-++....-.+|||++||.||. ++.- ...|. .|.. .-.+.++..+...|.+.|..+
T Consensus 363 ~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~-~~~g--g~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~ 439 (476)
T cd03791 363 LAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIV-RATG--GLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRA 439 (476)
T ss_pred HHHHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEE-CcCC--CccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHH
Confidence 3457889999999998888777889999999997654 4422 12233 2332 146667777777666555543
Q ss_pred -----CHHHHHHHHHHHHHHhhhccccC
Q 048582 500 -----SPRQYIRMHRRVVQVRRHFEFNS 522 (555)
Q Consensus 500 -----s~~~i~~Mrr~l~~v~~hf~y~~ 522 (555)
.+++..+|+++... ++|.|..
T Consensus 440 l~~~~~~~~~~~~~~~~~~--~~fsw~~ 465 (476)
T cd03791 440 LALYRDPEAWRKLQRNAMA--QDFSWDR 465 (476)
T ss_pred HHHHcCHHHHHHHHHHHhc--cCCChHH
Confidence 24666677666543 4566643
No 57
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=91.76 E-value=0.66 Score=49.37 Aligned_cols=91 Identities=12% Similarity=0.235 Sum_probs=60.7
Q ss_pred cHHHhcccccEEeecC--CCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhHHHHHhcC--CH
Q 048582 426 SYYEMMRKSKYCLCPS--GYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSILTSI--SP 501 (555)
Q Consensus 426 ~y~~~l~~S~FCL~P~--G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~sI--s~ 501 (555)
+....++.+..+++|. |.+. ...++|||++|| |||.++.- .+.+..=....+.++ .+..++.+.+..+ .+
T Consensus 290 ~~~~~~~~adv~v~Ps~~~eG~-~~~~lEAma~G~-PVV~t~~~---~~~i~~~~~~g~lv~-~~~~~la~ai~~ll~~~ 363 (397)
T TIGR03087 290 DVRPYLAHAAVAVAPLRIARGI-QNKVLEAMAMAK-PVVASPEA---AEGIDALPGAELLVA-ADPADFAAAILALLANP 363 (397)
T ss_pred CHHHHHHhCCEEEecccccCCc-ccHHHHHHHcCC-CEEecCcc---cccccccCCcceEeC-CCHHHHHHHHHHHHcCH
Confidence 4677889999999885 3333 456999999999 99998742 122211123345566 6666665555443 45
Q ss_pred HHHHHHHHHHHH-HhhhccccC
Q 048582 502 RQYIRMHRRVVQ-VRRHFEFNS 522 (555)
Q Consensus 502 ~~i~~Mrr~l~~-v~~hf~y~~ 522 (555)
+...+|.++.++ +.++|.|..
T Consensus 364 ~~~~~~~~~ar~~v~~~fsw~~ 385 (397)
T TIGR03087 364 AEREELGQAARRRVLQHYHWPR 385 (397)
T ss_pred HHHHHHHHHHHHHHHHhCCHHH
Confidence 667889888875 567888854
No 58
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=91.68 E-value=1.4 Score=47.59 Aligned_cols=103 Identities=17% Similarity=0.226 Sum_probs=62.8
Q ss_pred eEEeeecCCcccHHHhcccc--cEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecC-CChhh
Q 048582 415 IRVHKYLPKGVSYYEMMRKS--KYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALST-RDIPN 491 (555)
Q Consensus 415 v~v~~~~p~~~~y~~~l~~S--~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe-~di~~ 491 (555)
+...++.+ ..+..+.++.+ ..++.|...+-..-.++|||++|+ |||.+|--- ..++++=..-.+.++. .+..+
T Consensus 291 V~f~G~v~-~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~-PVIas~vgg--~~e~i~~~~~G~l~~~~~~~~~ 366 (407)
T cd04946 291 VNFTGELS-NSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGI-PVIATNVGG--TPEIVDNGGNGLLLSKDPTPNE 366 (407)
T ss_pred EEEecCCC-hHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCC-CEEeCCCCC--cHHHhcCCCcEEEeCCCCCHHH
Confidence 44443332 23455666653 333445544444567999999996 999887432 3356655544555654 35665
Q ss_pred HHHHHhcC--CHHHHHHHHHHHHHH-hhhcccc
Q 048582 492 LKSILTSI--SPRQYIRMHRRVVQV-RRHFEFN 521 (555)
Q Consensus 492 L~~iL~sI--s~~~i~~Mrr~l~~v-~~hf~y~ 521 (555)
+.+.|..+ ++++..+|+++.++. .++|.+.
T Consensus 367 la~~I~~ll~~~~~~~~m~~~ar~~~~~~f~~~ 399 (407)
T cd04946 367 LVSSLSKFIDNEEEYQTMREKAREKWEENFNAS 399 (407)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHH
Confidence 55555543 578889999988865 4676653
No 59
>PHA01630 putative group 1 glycosyl transferase
Probab=91.68 E-value=0.45 Score=50.31 Aligned_cols=95 Identities=17% Similarity=0.236 Sum_probs=58.2
Q ss_pred ccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCC--------------------ceEEEe
Q 048582 425 VSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWK--------------------SFSVAL 484 (555)
Q Consensus 425 ~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~--------------------~fSV~I 484 (555)
.+..+.++.+..++.|.-++....-+.|||++|| |||.+|.- ...|++.-. .+.+.+
T Consensus 201 ~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~-PVIas~~g--g~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v 277 (331)
T PHA01630 201 DDIYSLFAGCDILFYPVRGGAFEIPVIEALALGL-DVVVTEKG--AWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFL 277 (331)
T ss_pred HHHHHHHHhCCEEEECCccccCChHHHHHHHcCC-CEEEeCCC--CchhhccCCCceEEeeecccccccccCCccccccc
Confidence 3567789999999998876655667999999999 88888742 233333222 122333
Q ss_pred cCCChh---hHHHHHhcCCHHHH-HHHHHHHHHHhhhccccC
Q 048582 485 STRDIP---NLKSILTSISPRQY-IRMHRRVVQVRRHFEFNS 522 (555)
Q Consensus 485 pe~di~---~L~~iL~sIs~~~i-~~Mrr~l~~v~~hf~y~~ 522 (555)
+.++-. .+..+|...+++++ ..|.++.+.+.+.|.|..
T Consensus 278 ~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ 319 (331)
T PHA01630 278 DPDIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYNA 319 (331)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 333222 34444444322444 445555566888888754
No 60
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=91.16 E-value=0.16 Score=45.00 Aligned_cols=77 Identities=21% Similarity=0.370 Sum_probs=46.0
Q ss_pred CeEEeeecCCcccHHHhcccccEEeecCCC-CCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhH
Q 048582 414 DIRVHKYLPKGVSYYEMMRKSKYCLCPSGY-EVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNL 492 (555)
Q Consensus 414 dv~v~~~~p~~~~y~~~l~~S~FCL~P~G~-~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L 492 (555)
.+.+..+. .++.+.|+++.++++|.-. +-.+..++|++.+|| |||.++. ++.+.+.-....+.+ ..+..++
T Consensus 54 ~v~~~g~~---~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~-pvi~~~~---~~~~~~~~~~~~~~~-~~~~~~l 125 (135)
T PF13692_consen 54 NVRFHGFV---EELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGK-PVIASDN---GAEGIVEEDGCGVLV-ANDPEEL 125 (135)
T ss_dssp TEEEE-S----HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT---EEEEHH---HCHCHS---SEEEE--TT-HHHH
T ss_pred CEEEcCCH---HHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCC-CEEECCc---chhhheeecCCeEEE-CCCHHHH
Confidence 45555443 3789999999999998742 234689999999999 7777776 445444435666666 6677776
Q ss_pred HHHHhc
Q 048582 493 KSILTS 498 (555)
Q Consensus 493 ~~iL~s 498 (555)
.+.|+.
T Consensus 126 ~~~i~~ 131 (135)
T PF13692_consen 126 AEAIER 131 (135)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 61
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=90.93 E-value=1.6 Score=48.04 Aligned_cols=95 Identities=16% Similarity=0.140 Sum_probs=66.8
Q ss_pred cccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCC------CceEEEecCCChhhHHHHHh
Q 048582 424 GVSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNW------KSFSVALSTRDIPNLKSILT 497 (555)
Q Consensus 424 ~~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW------~~fSV~Ipe~di~~L~~iL~ 497 (555)
..+..+.|..+..++.|.-.+-...-++|||++|| |||.+|.- ...++++= ....+.++..|..++.+.+.
T Consensus 361 ~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~-PVVatd~g--~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~ 437 (475)
T cd03813 361 FQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGI-PVVATDVG--SCRELIEGADDEALGPAGEVVPPADPEALARAIL 437 (475)
T ss_pred CccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCC-CEEECCCC--ChHHHhcCCcccccCCceEEECCCCHHHHHHHHH
Confidence 34677888999999988755544667999999999 99888742 22333332 34677888888877666655
Q ss_pred cC--CHHHHHHHHHHHHH-Hhhhcccc
Q 048582 498 SI--SPRQYIRMHRRVVQ-VRRHFEFN 521 (555)
Q Consensus 498 sI--s~~~i~~Mrr~l~~-v~~hf~y~ 521 (555)
.+ +++...+|.++.++ +.++|.|.
T Consensus 438 ~ll~~~~~~~~~~~~a~~~v~~~~s~~ 464 (475)
T cd03813 438 RLLKDPELRRAMGEAGRKRVERYYTLE 464 (475)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHhCCHH
Confidence 54 57778888888875 55666653
No 62
>PLN02949 transferase, transferring glycosyl groups
Probab=90.68 E-value=0.73 Score=51.08 Aligned_cols=94 Identities=13% Similarity=0.128 Sum_probs=58.8
Q ss_pred ccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCC-CCC-ceEEEecCCChhhHHHHHhcC---
Q 048582 425 VSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVL-NWK-SFSVALSTRDIPNLKSILTSI--- 499 (555)
Q Consensus 425 ~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvL-DW~-~fSV~Ipe~di~~L~~iL~sI--- 499 (555)
.+..+.|+++.+++.|.-++....-+.|||++||+|| .++.- =|-++++ ++. .-.-++. .++.++.+.+..+
T Consensus 346 ~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVI-a~~~g-Gp~~eIV~~~~~g~tG~l~-~~~~~la~ai~~ll~~ 422 (463)
T PLN02949 346 RDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPI-AHNSA-GPKMDIVLDEDGQQTGFLA-TTVEEYADAILEVLRM 422 (463)
T ss_pred HHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEE-EeCCC-CCcceeeecCCCCcccccC-CCHHHHHHHHHHHHhC
Confidence 4567789999999988766655677999999998554 44421 1333333 221 1111122 2565555544443
Q ss_pred CHHHHHHHHHHHHHHhhhcccc
Q 048582 500 SPRQYIRMHRRVVQVRRHFEFN 521 (555)
Q Consensus 500 s~~~i~~Mrr~l~~v~~hf~y~ 521 (555)
++++..+|+++.++..++|.|.
T Consensus 423 ~~~~r~~m~~~ar~~~~~FS~e 444 (463)
T PLN02949 423 RETERLEIAAAARKRANRFSEQ 444 (463)
T ss_pred CHHHHHHHHHHHHHHHHHcCHH
Confidence 5677788999988776777764
No 63
>PHA01633 putative glycosyl transferase group 1
Probab=90.62 E-value=0.58 Score=49.91 Aligned_cols=93 Identities=13% Similarity=0.290 Sum_probs=57.5
Q ss_pred cHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCC------------------ceEEEecCC
Q 048582 426 SYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWK------------------SFSVALSTR 487 (555)
Q Consensus 426 ~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~------------------~fSV~Ipe~ 487 (555)
+..+.++.+.+.+.|.-.+....-+.|||++|| |||.++-- +..|+.++. .....++..
T Consensus 216 dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~-PVVas~~~--~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~~~ 292 (335)
T PHA01633 216 YIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGT-PVIHQLMP--PLDEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIHKF 292 (335)
T ss_pred HHHHHHHhCCEEEECCccccCCHHHHHHHHcCC-CEEEccCC--CceeecCCccceeeCCCCHHHhcCcccCceeeecCC
Confidence 456889999999999877777788999999999 99988652 444544431 122234555
Q ss_pred ChhhHHHHHhcC-CHHHHHHHHHHHHHHhhhcccc
Q 048582 488 DIPNLKSILTSI-SPRQYIRMHRRVVQVRRHFEFN 521 (555)
Q Consensus 488 di~~L~~iL~sI-s~~~i~~Mrr~l~~v~~hf~y~ 521 (555)
+...+.+.|+.. ...+-.++..+.+...+.|.|.
T Consensus 293 d~~~la~ai~~~~~~~~~~~~~~~~~~~a~~f~~~ 327 (335)
T PHA01633 293 QIEDMANAIILAFELQDREERSMKLKELAKKYDIR 327 (335)
T ss_pred CHHHHHHHHHHHHhccChhhhhHHHHHHHHhcCHH
Confidence 555544444332 1112223344556667776664
No 64
>KOG2619 consensus Fucosyltransferase [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=90.39 E-value=1.6 Score=47.26 Aligned_cols=149 Identities=13% Similarity=0.152 Sum_probs=89.7
Q ss_pred CCCccccCCCCccCCccccCC---CCCcCcCCCCCCCCCcEEEEEeccCC-CCchhHHHHhhhcCCCCeEEee-ecC---
Q 048582 351 NTSEKFSPVKDVSFPEINLQT---GGLTGLIGGPSPSRRSILAFFAGGVH-GPIRPVLLEHWENKDEDIRVHK-YLP--- 422 (555)
Q Consensus 351 ~~s~~FrpgkDVsIP~~~~~~---~~~~~~~~~~~p~~R~~L~fFaG~~~-g~iR~~Ll~~~~~~d~dv~v~~-~~p--- 422 (555)
|...+||.+.|+-.|+-.... .....+.......+++.++.+.-++. ..-|..+++.+.+. -.+.++. |..
T Consensus 158 N~T~Tyr~dSd~~~pygy~~~~~~~~~~~p~~~~~~~k~~~~aw~vSnc~~~~~R~~~~~~L~k~-l~iD~YG~c~~~~~ 236 (372)
T KOG2619|consen 158 NWTMTYRRDSDLFVPYGYLEKPEANPVLVPVNSILSAKTKLAAWLVSNCIPRSARLDYYKELMKH-LEIDSYGECLRKNA 236 (372)
T ss_pred cceEEEeccCCCCCccceEeecccCceecccccccccccceeeeeccccCcchHHHHHHHHHHhh-Cceeeccccccccc
Confidence 345578999999999733222 11111222223566777777776654 35677777766544 2233332 221
Q ss_pred ---CcccHHHhcccccEEeecCCC---CCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecC-CChhhHHHH
Q 048582 423 ---KGVSYYEMMRKSKYCLCPSGY---EVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALST-RDIPNLKSI 495 (555)
Q Consensus 423 ---~~~~y~~~l~~S~FCL~P~G~---~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe-~di~~L~~i 495 (555)
....-.+.+.+-||-|.-..- ..-+.-|+-|+.+|.|||+++....-.| +. .+.-|.|.. ..+.+|...
T Consensus 237 ~~~~~~~~~~~~s~YKFyLAfENS~c~DYVTEKfw~al~~gsVPVvlg~~n~e~f---vP-~~SfI~vdDF~s~~ela~y 312 (372)
T KOG2619|consen 237 NRDPSDCLLETLSHYKFYLAFENSNCEDYVTEKFWNALDAGSVPVVLGPPNYENF---VP-PDSFIHVDDFQSPQELAAY 312 (372)
T ss_pred cCCCCCcceeecccceEEEEecccCCcccccHHHHhhhhcCcccEEECCcccccc---CC-CcceEehhhcCCHHHHHHH
Confidence 123467788899999965432 2347889999999999999998544333 33 334344422 345688888
Q ss_pred HhcCCHHHH
Q 048582 496 LTSISPRQY 504 (555)
Q Consensus 496 L~sIs~~~i 504 (555)
|+.+.+++-
T Consensus 313 lk~L~~n~~ 321 (372)
T KOG2619|consen 313 LKKLDKNPA 321 (372)
T ss_pred HHHhhcCHH
Confidence 888854433
No 65
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=90.07 E-value=1.1 Score=41.96 Aligned_cols=78 Identities=18% Similarity=0.069 Sum_probs=47.9
Q ss_pred cEEEEEeccCCCCchh-HHHHhhhcCCCCeEEeeecCCcccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeC
Q 048582 387 SILAFFAGGVHGPIRP-VLLEHWENKDEDIRVHKYLPKGVSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISE 465 (555)
Q Consensus 387 ~~L~fFaG~~~g~iR~-~Ll~~~~~~d~dv~v~~~~p~~~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD 465 (555)
++-+.+.|+....... .++.... ....+.+....+....+...++.|..+++|...+..+..++|||.+|| |||.++
T Consensus 135 ~~~~~i~G~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam~~g~-pvi~s~ 212 (229)
T cd01635 135 DLKLVIAGDGPEREYLEELLAALL-LLDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEAMACGL-PVIATD 212 (229)
T ss_pred CeEEEEEeCCCChHHHHHHHHhcC-CcccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChHHHHHHhCCC-CEEEcC
Confidence 5667777764432111 1111111 122344433322234566667779999999988888899999999998 777776
Q ss_pred C
Q 048582 466 H 466 (555)
Q Consensus 466 ~ 466 (555)
.
T Consensus 213 ~ 213 (229)
T cd01635 213 V 213 (229)
T ss_pred C
Confidence 4
No 66
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=88.51 E-value=3.2 Score=47.38 Aligned_cols=93 Identities=15% Similarity=0.131 Sum_probs=59.8
Q ss_pred cHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhHHHHH---hcCC--
Q 048582 426 SYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSIL---TSIS-- 500 (555)
Q Consensus 426 ~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL---~sIs-- 500 (555)
+..+.|+.+..++.|.-++....-++|||.+|| |||.++.--. .++|.-..-.+.++..|...+.+.+ ..+.
T Consensus 465 Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~Gl-PVVATdvGG~--~EiV~dG~nG~LVp~~D~~aLa~ai~lA~aL~~l 541 (578)
T PRK15490 465 DVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGV-PVISTPAGGS--AECFIEGVSGFILDDAQTVNLDQACRYAEKLVNL 541 (578)
T ss_pred hHHHHHHhCCEEEEcccccCccHHHHHHHHhCC-CEEEeCCCCc--HHHcccCCcEEEECCCChhhHHHHHHHHHHHHHH
Confidence 566788999999888777767788999999999 9999885322 3555445556667777654433322 2221
Q ss_pred HHHHHHHHHHHHH-Hhhhcccc
Q 048582 501 PRQYIRMHRRVVQ-VRRHFEFN 521 (555)
Q Consensus 501 ~~~i~~Mrr~l~~-v~~hf~y~ 521 (555)
.++..+|.++.++ +.++|.|.
T Consensus 542 l~~~~~mg~~ARe~V~e~FS~e 563 (578)
T PRK15490 542 WRSRTGICQQTQSFLQERFTVE 563 (578)
T ss_pred HHHHHHHHHHHHHHHHhhCCHH
Confidence 1223345455554 66777764
No 67
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=87.80 E-value=1.4 Score=53.37 Aligned_cols=92 Identities=12% Similarity=0.155 Sum_probs=66.4
Q ss_pred HHhcccc----cEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhHHHHHhcC--CH
Q 048582 428 YEMMRKS----KYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSILTSI--SP 501 (555)
Q Consensus 428 ~~~l~~S----~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~sI--s~ 501 (555)
.+.++.+ ..+++|.=++....-+.|||++|| |||.++.- ...|++.-..-.+.++..|...|.+.|..+ .+
T Consensus 562 p~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGl-PVVASdvG--G~~EII~~g~nGlLVdP~D~eaLA~AL~~LL~Dp 638 (1050)
T TIGR02468 562 PDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGL-PMVATKNG--GPVDIHRVLDNGLLVDPHDQQAIADALLKLVADK 638 (1050)
T ss_pred HHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCC-CEEEeCCC--CcHHHhccCCcEEEECCCCHHHHHHHHHHHhhCH
Confidence 4455544 355667666666678999999998 99999853 344666656667888888888766665554 46
Q ss_pred HHHHHHHHHHHHHhhhccccC
Q 048582 502 RQYIRMHRRVVQVRRHFEFNS 522 (555)
Q Consensus 502 ~~i~~Mrr~l~~v~~hf~y~~ 522 (555)
+...+|.++.++..+.|.|..
T Consensus 639 elr~~m~~~gr~~v~~FSWe~ 659 (1050)
T TIGR02468 639 QLWAECRQNGLKNIHLFSWPE 659 (1050)
T ss_pred HHHHHHHHHHHHHHHHCCHHH
Confidence 677899999887777888864
No 68
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=87.34 E-value=1.7 Score=51.39 Aligned_cols=87 Identities=11% Similarity=0.200 Sum_probs=63.4
Q ss_pred ccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhHHHHHhcC------CHHHHHHH
Q 048582 434 SKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSILTSI------SPRQYIRM 507 (555)
Q Consensus 434 S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~sI------s~~~i~~M 507 (555)
...+++|+=++....-+.|||++|| |||.++.=-+ .|+|.-..-.+.|+..|...+.+.|..+ .++...+|
T Consensus 644 adVfV~PS~~EpFGLvvLEAMAcGl-PVVAT~~GG~--~EiV~dg~tGfLVdp~D~eaLA~aL~~ll~kll~dp~~~~~m 720 (784)
T TIGR02470 644 KGIFVQPALYEAFGLTVLEAMTCGL-PTFATRFGGP--LEIIQDGVSGFHIDPYHGEEAAEKIVDFFEKCDEDPSYWQKI 720 (784)
T ss_pred CcEEEECCcccCCCHHHHHHHHcCC-CEEEcCCCCH--HHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3466778878877888999999999 8887765322 2445556667778888887766655542 57778889
Q ss_pred HHHHH-HHhhhccccCC
Q 048582 508 HRRVV-QVRRHFEFNSP 523 (555)
Q Consensus 508 rr~l~-~v~~hf~y~~p 523 (555)
.++.+ ++.++|.|..-
T Consensus 721 s~~a~~rV~~~FSW~~~ 737 (784)
T TIGR02470 721 SQGGLQRIYEKYTWKIY 737 (784)
T ss_pred HHHHHHHHHHhCCHHHH
Confidence 88865 57899999753
No 69
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=86.66 E-value=2.3 Score=47.72 Aligned_cols=93 Identities=14% Similarity=0.129 Sum_probs=60.8
Q ss_pred cHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCC-ccCCCCCCCCCCceEEEecC----C---C-hhhHHHHH
Q 048582 426 SYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEH-YVPPFSDVLNWKSFSVALST----R---D-IPNLKSIL 496 (555)
Q Consensus 426 ~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~-~~LPF~dvLDW~~fSV~Ipe----~---d-i~~L~~iL 496 (555)
+..+.++.+.-+++|.=.+-...-+.|||++|| |||.+|- +-. .++|.=..-.+.++. . + +..|.+.+
T Consensus 385 ~~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~-PVI~~dv~~G~--~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I 461 (500)
T TIGR02918 385 NLSEVYKDYELYLSASTSEGFGLTLMEAVGSGL-GMIGFDVNYGN--PTFIEDNKNGYLIPIDEEEDDEDQIITALAEKI 461 (500)
T ss_pred CHHHHHHhCCEEEEcCccccccHHHHHHHHhCC-CEEEecCCCCC--HHHccCCCCEEEEeCCccccchhHHHHHHHHHH
Confidence 456778888888887755555677999999999 9998873 222 244433433444441 2 2 44333322
Q ss_pred hc-CCHHHHHHHHHHHHHHhhhcccc
Q 048582 497 TS-ISPRQYIRMHRRVVQVRRHFEFN 521 (555)
Q Consensus 497 ~s-Is~~~i~~Mrr~l~~v~~hf~y~ 521 (555)
.. +.++++.+|.++.++..+.|.|.
T Consensus 462 ~~ll~~~~~~~~~~~a~~~a~~fs~~ 487 (500)
T TIGR02918 462 VEYFNSNDIDAFHEYSYQIAEGFLTA 487 (500)
T ss_pred HHHhChHHHHHHHHHHHHHHHhcCHH
Confidence 22 24667899999999988888764
No 70
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=85.58 E-value=9 Score=40.80 Aligned_cols=79 Identities=14% Similarity=0.263 Sum_probs=51.3
Q ss_pred cHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCC------CCCCceEEEecCCChhhHHHHHhcC
Q 048582 426 SYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDV------LNWKSFSVALSTRDIPNLKSILTSI 499 (555)
Q Consensus 426 ~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dv------LDW~~fSV~Ipe~di~~L~~iL~sI 499 (555)
+..++|+.|..++.++|.. -+.|||.+|| |||+.+. .|-+++ ++ ..+.+.+ .+...|.+.+..+
T Consensus 275 ~~~~l~~aaDv~V~~~g~~----ti~EAma~g~-PvI~~~~--~pgqe~gn~~~i~~-~g~g~~~--~~~~~la~~i~~l 344 (382)
T PLN02605 275 NMEEWMGACDCIITKAGPG----TIAEALIRGL-PIILNGY--IPGQEEGNVPYVVD-NGFGAFS--ESPKEIARIVAEW 344 (382)
T ss_pred cHHHHHHhCCEEEECCCcc----hHHHHHHcCC-CEEEecC--CCccchhhHHHHHh-CCceeec--CCHHHHHHHHHHH
Confidence 5788999999999877732 4899999999 9999873 243332 22 3445443 4555555544433
Q ss_pred --C-HHHHHHHHHHHHHH
Q 048582 500 --S-PRQYIRMHRRVVQV 514 (555)
Q Consensus 500 --s-~~~i~~Mrr~l~~v 514 (555)
. ++...+|+++.++.
T Consensus 345 l~~~~~~~~~m~~~~~~~ 362 (382)
T PLN02605 345 FGDKSDELEAMSENALKL 362 (382)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 2 56677777766654
No 71
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=84.88 E-value=5.7 Score=40.89 Aligned_cols=107 Identities=13% Similarity=0.152 Sum_probs=63.1
Q ss_pred hhHHHHhhhcCCCCeEEeeecCCcccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCcc-------CCCCC
Q 048582 401 RPVLLEHWENKDEDIRVHKYLPKGVSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYV-------PPFSD 473 (555)
Q Consensus 401 R~~Ll~~~~~~d~dv~v~~~~p~~~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~-------LPF~d 473 (555)
+..+.+......+.+.+..+. .++.+.|..+.+.+++.|. .-+.|||.+|+ |||..+.-. .+. +
T Consensus 223 ~~~l~~~~~~~~~~v~~~g~~---~~~~~~l~~ad~~v~~sg~----~t~~Eam~~G~-Pvv~~~~~~~~~~~~~~~~-~ 293 (350)
T cd03785 223 LEEVKKAYEELGVNYEVFPFI---DDMAAAYAAADLVISRAGA----STVAELAALGL-PAILIPLPYAADDHQTANA-R 293 (350)
T ss_pred HHHHHHHHhccCCCeEEeehh---hhHHHHHHhcCEEEECCCH----hHHHHHHHhCC-CEEEeecCCCCCCcHHHhH-H
Confidence 344444433222235444332 4788899999999988773 34899999999 777754211 111 2
Q ss_pred CCCCCceEEEecCC--ChhhHHHHHhcC--CHHHHHHHHHHHHHHhh
Q 048582 474 VLNWKSFSVALSTR--DIPNLKSILTSI--SPRQYIRMHRRVVQVRR 516 (555)
Q Consensus 474 vLDW~~fSV~Ipe~--di~~L~~iL~sI--s~~~i~~Mrr~l~~v~~ 516 (555)
.+......+.++.. +..+|.+.|+.+ .++.+.+|+++.+...+
T Consensus 294 ~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~ 340 (350)
T cd03785 294 ALVKAGAAVLIPQEELTPERLAAALLELLSDPERLKAMAEAARSLAR 340 (350)
T ss_pred HHHhCCCEEEEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 23334556666655 666665555443 46677778777765443
No 72
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=84.85 E-value=4.6 Score=42.64 Aligned_cols=82 Identities=17% Similarity=0.263 Sum_probs=49.2
Q ss_pred cHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCC-----CCCCCceEEEecCCChhhHHHHHhcC-
Q 048582 426 SYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSD-----VLNWKSFSVALSTRDIPNLKSILTSI- 499 (555)
Q Consensus 426 ~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~d-----vLDW~~fSV~Ipe~di~~L~~iL~sI- 499 (555)
+..+.|+.|...++.+| ..-+.||+++|+ |||+.+.. |-.+ .+.-..+.+.. .+..+|.+.|+.+
T Consensus 266 ~~~~l~~~aD~~v~~~g----g~t~~EA~a~g~-PvI~~~~~--~g~~~~n~~~~~~~G~~~~~--~~~~~l~~~i~~ll 336 (380)
T PRK13609 266 NIDELFRVTSCMITKPG----GITLSEAAALGV-PVILYKPV--PGQEKENAMYFERKGAAVVI--RDDEEVFAKTEALL 336 (380)
T ss_pred hHHHHHHhccEEEeCCC----chHHHHHHHhCC-CEEECCCC--CCcchHHHHHHHhCCcEEEE--CCHHHHHHHHHHHH
Confidence 45688899997766444 234889999999 88886532 2111 12223444433 4555555544443
Q ss_pred -CHHHHHHHHHHHHHHhh
Q 048582 500 -SPRQYIRMHRRVVQVRR 516 (555)
Q Consensus 500 -s~~~i~~Mrr~l~~v~~ 516 (555)
.++.+.+|+++.+++.+
T Consensus 337 ~~~~~~~~m~~~~~~~~~ 354 (380)
T PRK13609 337 QDDMKLLQMKEAMKSLYL 354 (380)
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 46777888887776543
No 73
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=83.42 E-value=5.2 Score=42.91 Aligned_cols=84 Identities=18% Similarity=0.191 Sum_probs=54.2
Q ss_pred cHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCC-----CCceEEEecCCChhhHHHHHhcC-
Q 048582 426 SYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLN-----WKSFSVALSTRDIPNLKSILTSI- 499 (555)
Q Consensus 426 ~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLD-----W~~fSV~Ipe~di~~L~~iL~sI- 499 (555)
+..+.|+.|.++++.+|. .-+.||+.+|+ |||+.+.. |=++..| =..+.+.+ .+..++.+.|..+
T Consensus 266 ~~~~~~~~aDl~I~k~gg----~tl~EA~a~G~-PvI~~~~~--pgqe~~N~~~~~~~G~g~~~--~~~~~l~~~i~~ll 336 (391)
T PRK13608 266 HMNEWMASSQLMITKPGG----ITISEGLARCI-PMIFLNPA--PGQELENALYFEEKGFGKIA--DTPEEAIKIVASLT 336 (391)
T ss_pred hHHHHHHhhhEEEeCCch----HHHHHHHHhCC-CEEECCCC--CCcchhHHHHHHhCCcEEEe--CCHHHHHHHHHHHh
Confidence 567899999999985552 24899999998 99998742 3333322 23344443 2444444444433
Q ss_pred -CHHHHHHHHHHHHHHhhhc
Q 048582 500 -SPRQYIRMHRRVVQVRRHF 518 (555)
Q Consensus 500 -s~~~i~~Mrr~l~~v~~hf 518 (555)
.++++.+|+++.++..+.+
T Consensus 337 ~~~~~~~~m~~~~~~~~~~~ 356 (391)
T PRK13608 337 NGNEQLTNMISTMEQDKIKY 356 (391)
T ss_pred cCHHHHHHHHHHHHHhcCCC
Confidence 5678888998888776543
No 74
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=81.54 E-value=11 Score=39.69 Aligned_cols=127 Identities=17% Similarity=0.236 Sum_probs=66.5
Q ss_pred EEEeccCCCCchhHHHHhhhcCCCCeEEeeecCCcccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccC
Q 048582 390 AFFAGGVHGPIRPVLLEHWENKDEDIRVHKYLPKGVSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVP 469 (555)
Q Consensus 390 ~fFaG~~~g~iR~~Ll~~~~~~d~dv~v~~~~p~~~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~L 469 (555)
+.|.|...+.++..+.+.+.. .+.+.+.+.. ...++...|+.+.+++.+.|. -+.||+.+|| |||...+.-
T Consensus 233 ~vi~~~~~~~~~~~~~~~~~~-~~~v~~~~~~-~~~~~~~~l~~ad~vv~~Sg~-----~~~EA~a~g~-PvI~~~~~~- 303 (365)
T TIGR00236 233 IVYPVHLNPVVREPLHKHLGD-SKRVHLIEPL-EYLDFLNLAANSHLILTDSGG-----VQEEAPSLGK-PVLVLRDTT- 303 (365)
T ss_pred EEEECCCChHHHHHHHHHhCC-CCCEEEECCC-ChHHHHHHHHhCCEEEECChh-----HHHHHHHcCC-CEEECCCCC-
Confidence 333433333455545444432 2335544322 223678899999999988763 2799999998 999863321
Q ss_pred CCCCCCCCCceEEEecCCChhhHHHHHhcC--CHHHHHHHHHHHHHHhhhccccCCCCCccHHHHHHHHH
Q 048582 470 PFSDVLNWKSFSVALSTRDIPNLKSILTSI--SPRQYIRMHRRVVQVRRHFEFNSPPKRFDVFHMILHSI 537 (555)
Q Consensus 470 PF~dvLDW~~fSV~Ipe~di~~L~~iL~sI--s~~~i~~Mrr~l~~v~~hf~y~~p~~~~DaF~mil~~l 537 (555)
-..+.+. ....+.++ .+..+|.+.|+.+ .++...+|.++. .+-+..+|...|++.|
T Consensus 304 ~~~e~~~-~g~~~lv~-~d~~~i~~ai~~ll~~~~~~~~~~~~~----------~~~g~~~a~~ri~~~l 361 (365)
T TIGR00236 304 ERPETVE-AGTNKLVG-TDKENITKAAKRLLTDPDEYKKMSNAS----------NPYGDGEASERIVEEL 361 (365)
T ss_pred CChHHHh-cCceEEeC-CCHHHHHHHHHHHHhChHHHHHhhhcC----------CCCcCchHHHHHHHHH
Confidence 1223444 33444554 4555555444432 223333332211 1223356777777665
No 75
>PLN02939 transferase, transferring glycosyl groups
Probab=81.31 E-value=4.9 Score=48.43 Aligned_cols=95 Identities=18% Similarity=0.273 Sum_probs=63.0
Q ss_pred HHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCC--------ceEEEecCCChhhHHHHHhc-
Q 048582 428 YEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWK--------SFSVALSTRDIPNLKSILTS- 498 (555)
Q Consensus 428 ~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~--------~fSV~Ipe~di~~L~~iL~s- 498 (555)
...++.+.++++|.=+++..--+.|||++||+||+....- ++ +-+.|++ .-.+.++..+...|...|..
T Consensus 851 h~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGG-L~-DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rA 928 (977)
T PLN02939 851 HSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGG-LN-DSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERA 928 (977)
T ss_pred HHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCC-Cc-ceeecCCccccccCCCceEEecCCCHHHHHHHHHHH
Confidence 3579999999999988888888999999999998754321 11 1122332 23556677777665544432
Q ss_pred ---C--CHHHHHHHHHHHHHHhhhccccCCCCC
Q 048582 499 ---I--SPRQYIRMHRRVVQVRRHFEFNSPPKR 526 (555)
Q Consensus 499 ---I--s~~~i~~Mrr~l~~v~~hf~y~~p~~~ 526 (555)
+ .++.+.+|+++. +.+.|.|.....+
T Consensus 929 L~~~~~dpe~~~~L~~~a--m~~dFSWe~~A~q 959 (977)
T PLN02939 929 FNYYKRKPEVWKQLVQKD--MNIDFSWDSSASQ 959 (977)
T ss_pred HHHhccCHHHHHHHHHHH--HHhcCCHHHHHHH
Confidence 2 467778887754 4578888654433
No 76
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=81.26 E-value=3 Score=42.98 Aligned_cols=83 Identities=12% Similarity=0.147 Sum_probs=52.7
Q ss_pred cHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCC-----CCCCCCceEEEecCCC--hhhHHHHHhc
Q 048582 426 SYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFS-----DVLNWKSFSVALSTRD--IPNLKSILTS 498 (555)
Q Consensus 426 ~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~-----dvLDW~~fSV~Ipe~d--i~~L~~iL~s 498 (555)
++.+.|..+..++.+.|. .-++|||.+|+ |||+.+.---+-+ +.+......+.++..+ ..+|.+.|+.
T Consensus 243 ~~~~~l~~ad~~v~~~g~----~~l~Ea~~~g~-Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ 317 (348)
T TIGR01133 243 NMAAAYAAADLVISRAGA----STVAELAAAGV-PAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLK 317 (348)
T ss_pred CHHHHHHhCCEEEECCCh----hHHHHHHHcCC-CEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHH
Confidence 788999999999998762 35899999998 8888642100000 1233455566676554 5555444443
Q ss_pred C--CHHHHHHHHHHHHH
Q 048582 499 I--SPRQYIRMHRRVVQ 513 (555)
Q Consensus 499 I--s~~~i~~Mrr~l~~ 513 (555)
+ .++...+|.++.++
T Consensus 318 ll~~~~~~~~~~~~~~~ 334 (348)
T TIGR01133 318 LLLDPANLEAMAEAARK 334 (348)
T ss_pred HHcCHHHHHHHHHHHHh
Confidence 2 45666777777654
No 77
>PLN00142 sucrose synthase
Probab=80.89 E-value=4.4 Score=48.11 Aligned_cols=91 Identities=12% Similarity=0.178 Sum_probs=62.6
Q ss_pred Hhccc-ccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhHHHHHhc------CCH
Q 048582 429 EMMRK-SKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSILTS------ISP 501 (555)
Q Consensus 429 ~~l~~-S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~s------Is~ 501 (555)
..+.. +..+++|.=++....-+.|||++|| |||.++.--++ |+|.-..-.+.++..+...+.+.|.. -.+
T Consensus 661 r~iadaaDVfVlPS~~EgFGLvvLEAMA~Gl-PVVATdvGG~~--EIV~dG~tG~LV~P~D~eaLA~aI~~lLekLl~Dp 737 (815)
T PLN00142 661 RYIADTKGAFVQPALYEAFGLTVVEAMTCGL-PTFATCQGGPA--EIIVDGVSGFHIDPYHGDEAANKIADFFEKCKEDP 737 (815)
T ss_pred HHHHhhCCEEEeCCcccCCCHHHHHHHHcCC-CEEEcCCCCHH--HHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCH
Confidence 33443 3455678767766778999999998 89888753332 45555666777888887765554432 157
Q ss_pred HHHHHHHHHHH-HHhhhccccC
Q 048582 502 RQYIRMHRRVV-QVRRHFEFNS 522 (555)
Q Consensus 502 ~~i~~Mrr~l~-~v~~hf~y~~ 522 (555)
+...+|.++.+ ++.++|.|..
T Consensus 738 ~lr~~mg~~Ar~rv~e~FSWe~ 759 (815)
T PLN00142 738 SYWNKISDAGLQRIYECYTWKI 759 (815)
T ss_pred HHHHHHHHHHHHHHHHhCCHHH
Confidence 77888888865 5778998864
No 78
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=80.88 E-value=1.6 Score=45.58 Aligned_cols=88 Identities=14% Similarity=0.180 Sum_probs=55.5
Q ss_pred ccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCC-ccCC-----CCCCCCCCceEEEecCCC--hhhHHHHH
Q 048582 425 VSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEH-YVPP-----FSDVLNWKSFSVALSTRD--IPNLKSIL 496 (555)
Q Consensus 425 ~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~-~~LP-----F~dvLDW~~fSV~Ipe~d--i~~L~~iL 496 (555)
.++.+.|..+..+++..|. .-++|||++|| |||..+. .... ..+.+--....+.++.++ ...|.+.+
T Consensus 244 ~~~~~~~~~~d~~i~~~g~----~~~~Ea~~~g~-Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i 318 (357)
T PRK00726 244 DDMAAAYAAADLVICRAGA----STVAELAAAGL-PAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKL 318 (357)
T ss_pred hhHHHHHHhCCEEEECCCH----HHHHHHHHhCC-CEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHH
Confidence 3678999999999998772 34899999999 7776542 1111 112232345677787766 44555544
Q ss_pred hcC--CHHHHHHHHHHHHHHhhh
Q 048582 497 TSI--SPRQYIRMHRRVVQVRRH 517 (555)
Q Consensus 497 ~sI--s~~~i~~Mrr~l~~v~~h 517 (555)
+.+ .++...+|+++.++..+.
T Consensus 319 ~~ll~~~~~~~~~~~~~~~~~~~ 341 (357)
T PRK00726 319 LELLSDPERLEAMAEAARALGKP 341 (357)
T ss_pred HHHHcCHHHHHHHHHHHHhcCCc
Confidence 443 356667788876555443
No 79
>PRK10125 putative glycosyl transferase; Provisional
Probab=78.29 E-value=8 Score=41.99 Aligned_cols=66 Identities=15% Similarity=0.195 Sum_probs=51.6
Q ss_pred cHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhHHHH
Q 048582 426 SYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSI 495 (555)
Q Consensus 426 ~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~i 495 (555)
+..+.++.+...+.|.-++-...-+.|||++|| |||.+|-=-. .|+++-. -.+.++..|+..|.+.
T Consensus 299 ~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~-PVVat~~gG~--~Eiv~~~-~G~lv~~~d~~~La~~ 364 (405)
T PRK10125 299 KLMSALNQMDALVFSSRVDNYPLILCEALSIGV-PVIATHSDAA--REVLQKS-GGKTVSEEEVLQLAQL 364 (405)
T ss_pred HHHHHHHhCCEEEECCccccCcCHHHHHHHcCC-CEEEeCCCCh--HHhEeCC-cEEEECCCCHHHHHhc
Confidence 467788889988888877767788999999998 9999985433 3566533 5788899999888764
No 80
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=77.76 E-value=13 Score=43.59 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=59.2
Q ss_pred cHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCCh--h----hHHHHHhcC
Q 048582 426 SYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDI--P----NLKSILTSI 499 (555)
Q Consensus 426 ~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di--~----~L~~iL~sI 499 (555)
+....|+.+...+.|.-++....-++|||.+|| |||.++.-- ..++|.-..-.+.++..+. + .|.++|...
T Consensus 584 dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~-PVVat~~gG--~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l 660 (694)
T PRK15179 584 RVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGV-PVVTTLAGG--AGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMC 660 (694)
T ss_pred hHHHHHHhcCEEEeccccccchHHHHHHHHcCC-eEEEECCCC--hHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhCh
Confidence 466778888888888766666788999999998 999987532 2355544555666775553 2 344444433
Q ss_pred CHHHHHHHHHHHHH-HhhhccccC
Q 048582 500 SPRQYIRMHRRVVQ-VRRHFEFNS 522 (555)
Q Consensus 500 s~~~i~~Mrr~l~~-v~~hf~y~~ 522 (555)
.. -.+|+++.++ +.++|.|..
T Consensus 661 ~~--~~~l~~~ar~~a~~~FS~~~ 682 (694)
T PRK15179 661 AA--DPGIARKAADWASARFSLNQ 682 (694)
T ss_pred hc--cHHHHHHHHHHHHHhCCHHH
Confidence 21 2345566654 556777653
No 81
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=77.50 E-value=16 Score=39.49 Aligned_cols=130 Identities=17% Similarity=0.192 Sum_probs=75.4
Q ss_pred EEEEEeccCCCCchhHHHHhhhcC------CCCeEEeeecCCcccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeE
Q 048582 388 ILAFFAGGVHGPIRPVLLEHWENK------DEDIRVHKYLPKGVSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPV 461 (555)
Q Consensus 388 ~L~fFaG~~~g~iR~~Ll~~~~~~------d~dv~v~~~~p~~~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPV 461 (555)
+=+.++|++++.-...-++++++. +.+++.....| -.+..+++..+.+.+.-.=.+...-.++|+|++|.|||
T Consensus 306 iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v~F~~N~P-y~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIpi 384 (465)
T KOG1387|consen 306 IKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHVQFEKNVP-YEKLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIPI 384 (465)
T ss_pred ceEEEEeccCChhhHHHHHHHHHHHHhcCCccceEEEecCC-HHHHHHHhccceeehhhhhhhhcchhHHHHHhcCceEE
Confidence 446788998876555444444321 23344432211 12456789999998877666655677999999999997
Q ss_pred EeeCCccCCCCCCCCCCce-EEEecCCChhhHHHHHhcC--CHHHHHHHHHHHHHHhhhcc
Q 048582 462 LISEHYVPPFSDVLNWKSF-SVALSTRDIPNLKSILTSI--SPRQYIRMHRRVVQVRRHFE 519 (555)
Q Consensus 462 IisD~~~LPF~dvLDW~~f-SV~Ipe~di~~L~~iL~sI--s~~~i~~Mrr~l~~v~~hf~ 519 (555)
.=... =+=+.=|++|..= .=++.+.+......||+-+ ..++...||++-+.--.+|.
T Consensus 385 ~h~Sg-GP~lDIV~~~~G~~tGFla~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFs 444 (465)
T KOG1387|consen 385 VHNSG-GPLLDIVTPWDGETTGFLAPTDEEYAEAILKIVKLNYDERNMMRRNARKSLARFG 444 (465)
T ss_pred EeCCC-CCceeeeeccCCccceeecCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhh
Confidence 65432 1112223445432 2233444443344444432 56668889998887665553
No 82
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=76.02 E-value=3.2 Score=44.01 Aligned_cols=67 Identities=12% Similarity=0.207 Sum_probs=43.1
Q ss_pred ccHHHhcccccEEeecCCCC-----CCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhHHHHHhc
Q 048582 425 VSYYEMMRKSKYCLCPSGYE-----VASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSILTS 498 (555)
Q Consensus 425 ~~y~~~l~~S~FCL~P~G~~-----~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~s 498 (555)
.+..+.++.+..|+.|.-.+ .....++|+|++|+ |||.++ +.++.+...-.+.+ ..+..++.+.|+.
T Consensus 265 ~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~-PVVat~-----~~~~~~~~~~~~~~-~~d~~~~~~ai~~ 336 (373)
T cd04950 265 KELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGK-PVVATP-----LPEVRRYEDEVVLI-ADDPEEFVAAIEK 336 (373)
T ss_pred HHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCC-CEEecC-----cHHHHhhcCcEEEe-CCCHHHHHHHHHH
Confidence 45778899999999986422 22357999999999 998664 23444333333333 4466665555555
No 83
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.45 E-value=3.1 Score=43.38 Aligned_cols=51 Identities=27% Similarity=0.499 Sum_probs=37.5
Q ss_pred cccccchhhHHhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 048582 151 NETHAVPMKAERKRAVTKLEKLEAGLQRARVAIKEASIGNQTQDPDFVPLGPMY 204 (555)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~A~~~i~ea~~~~~~~~~~~lp~~~iy 204 (555)
-|..+..-++|++||..||+|-|.+++.+-..+|+- |=|..|.++|..|.+
T Consensus 65 kq~eL~~rqeEL~Rke~ELdRREr~~a~~g~~~~~n---NWPPLP~~~pv~Pcf 115 (313)
T KOG3088|consen 65 KQAELLKKQEELRRKEQELDRRERALARAGIVIREN---NWPPLPSFIPVFPCF 115 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhccCccccc---CCCCCCCCCCccccc
Confidence 344566677888888888888888888876666665 667777777777643
No 84
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=73.78 E-value=16 Score=38.43 Aligned_cols=86 Identities=13% Similarity=0.157 Sum_probs=52.7
Q ss_pred cHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCC----CCCCCce------------E--EEecCC
Q 048582 426 SYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSD----VLNWKSF------------S--VALSTR 487 (555)
Q Consensus 426 ~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~d----vLDW~~f------------S--V~Ipe~ 487 (555)
+..+.|+.+..++++.|.. ..||+.+|| |||+..+. -||.. .+....+ . +..++.
T Consensus 254 ~~~~~~~~aDl~v~~sG~~-----~lEa~a~G~-PvI~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 326 (380)
T PRK00025 254 QKREAMAAADAALAASGTV-----TLELALLKV-PMVVGYKV-SPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEA 326 (380)
T ss_pred cHHHHHHhCCEEEECccHH-----HHHHHHhCC-CEEEEEcc-CHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCC
Confidence 5678899999999987743 459999999 99988543 22221 1111111 1 112333
Q ss_pred ChhhHHHHHhcC--CHHHHHHHHHHHHHHhhhc
Q 048582 488 DIPNLKSILTSI--SPRQYIRMHRRVVQVRRHF 518 (555)
Q Consensus 488 di~~L~~iL~sI--s~~~i~~Mrr~l~~v~~hf 518 (555)
+..+|.+.+..+ .++...+|.++...+++..
T Consensus 327 ~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 359 (380)
T PRK00025 327 TPEKLARALLPLLADGARRQALLEGFTELHQQL 359 (380)
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Confidence 444554444443 5677778888887777654
No 85
>PLN02316 synthase/transferase
Probab=71.70 E-value=6.6 Score=47.87 Aligned_cols=97 Identities=15% Similarity=0.219 Sum_probs=61.6
Q ss_pred HhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCC------------ceEEEecCCChhhHHHHH
Q 048582 429 EMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWK------------SFSVALSTRDIPNLKSIL 496 (555)
Q Consensus 429 ~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~------------~fSV~Ipe~di~~L~~iL 496 (555)
.+++.+.++|+|.=+++...-..|||++||+||+-... =+| +-+.|++ .--+.++..+...|...|
T Consensus 915 ~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vG-GL~-DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL 992 (1036)
T PLN02316 915 LIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTG-GLF-DTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYAL 992 (1036)
T ss_pred HHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCC-CcH-hhccccccccccccccccCCceEEeCCCCHHHHHHHH
Confidence 58999999999998888889999999999999985432 111 1123442 345667777776544433
Q ss_pred hc-CC--HHHHHHHHHHHHH-HhhhccccCCCCCc
Q 048582 497 TS-IS--PRQYIRMHRRVVQ-VRRHFEFNSPPKRF 527 (555)
Q Consensus 497 ~s-Is--~~~i~~Mrr~l~~-v~~hf~y~~p~~~~ 527 (555)
.. +. .+.-..|++..++ +.+.|.|.....+|
T Consensus 993 ~raL~~~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y 1027 (1036)
T PLN02316 993 NRAISAWYDGRDWFNSLCKRVMEQDWSWNRPALDY 1027 (1036)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 32 22 1223334544443 46788887655443
No 86
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=70.77 E-value=5.1 Score=43.07 Aligned_cols=100 Identities=12% Similarity=0.166 Sum_probs=59.5
Q ss_pred cHHHhcccccEEeecCCC-CCCCccHHHHHHhCCeeEEeeCCccCCCCCCCC---CCceEEEecCCChhhHHHHHhcC--
Q 048582 426 SYYEMMRKSKYCLCPSGY-EVASPRVVEAIYTGCVPVLISEHYVPPFSDVLN---WKSFSVALSTRDIPNLKSILTSI-- 499 (555)
Q Consensus 426 ~y~~~l~~S~FCL~P~G~-~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLD---W~~fSV~Ipe~di~~L~~iL~sI-- 499 (555)
+..+.++.+..|++++.. +....-++||+++|| |||.+++.. -|.++.+ -..+.+. ..|..+|.+.|..+
T Consensus 312 el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~-PVI~g~~~~-~~~e~~~~~~~~g~~~~--~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 312 ELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGV-PVISGPHTF-NFKEIFERLLQAGAAIQ--VEDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCC-CEEECCCcc-CHHHHHHHHHHCCCeEE--ECCHHHHHHHHHHHhc
Confidence 567788999987765432 223455999999999 999986521 1222211 1234433 45555555555443
Q ss_pred CHHHHHHHHHHHHHHhhhccccCCCCCccHHHHHHHHH
Q 048582 500 SPRQYIRMHRRVVQVRRHFEFNSPPKRFDVFHMILHSI 537 (555)
Q Consensus 500 s~~~i~~Mrr~l~~v~~hf~y~~p~~~~DaF~mil~~l 537 (555)
.++...+|.++.++..+.. .++...+++.+
T Consensus 388 ~~~~~~~m~~~a~~~~~~~--------~~~~~~~~~~l 417 (425)
T PRK05749 388 DPDARQAYGEAGVAFLKQN--------QGALQRTLQLL 417 (425)
T ss_pred CHHHHHHHHHHHHHHHHhC--------ccHHHHHHHHH
Confidence 4667788888877665432 24555555554
No 87
>PLN02275 transferase, transferring glycosyl groups
Probab=68.89 E-value=24 Score=37.43 Aligned_cols=101 Identities=14% Similarity=0.192 Sum_probs=60.1
Q ss_pred cEEEEEeccCCCCchhHHHHhhhcCC-CCeEEee-ecCCcccHHHhcccccEEeecCCC---CCCCccHHHHHHhCCeeE
Q 048582 387 SILAFFAGGVHGPIRPVLLEHWENKD-EDIRVHK-YLPKGVSYYEMMRKSKYCLCPSGY---EVASPRVVEAIYTGCVPV 461 (555)
Q Consensus 387 ~~L~fFaG~~~g~iR~~Ll~~~~~~d-~dv~v~~-~~p~~~~y~~~l~~S~FCL~P~G~---~~~s~Rl~EAL~aGCIPV 461 (555)
.+-+.+.|. |+.|..|.+..+... +++.+.. +.+ ..++.+.|+.+..|+.|... +....-++|||++|| ||
T Consensus 261 ~i~l~ivG~--G~~~~~l~~~~~~~~l~~v~~~~~~~~-~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~-PV 336 (371)
T PLN02275 261 RLLFIITGK--GPQKAMYEEKISRLNLRHVAFRTMWLE-AEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGL-PV 336 (371)
T ss_pred CeEEEEEeC--CCCHHHHHHHHHHcCCCceEEEcCCCC-HHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCC-CE
Confidence 466777884 566776666554322 2344332 222 45788899999998875321 112457999999999 99
Q ss_pred EeeCCccCCCCCCCCCCceEEEecCCChhhHHHH
Q 048582 462 LISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSI 495 (555)
Q Consensus 462 IisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~i 495 (555)
|.++.-- ..+++.=....+.++ +...|.+.
T Consensus 337 Va~~~gg--~~eiv~~g~~G~lv~--~~~~la~~ 366 (371)
T PLN02275 337 CAVSYSC--IGELVKDGKNGLLFS--SSSELADQ 366 (371)
T ss_pred EEecCCC--hHHHccCCCCeEEEC--CHHHHHHH
Confidence 9986322 235554444445554 34444443
No 88
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=66.56 E-value=14 Score=35.69 Aligned_cols=93 Identities=18% Similarity=0.251 Sum_probs=51.5
Q ss_pred cHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhHHHHHhcCC--HHH
Q 048582 426 SYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSILTSIS--PRQ 503 (555)
Q Consensus 426 ~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~sIs--~~~ 503 (555)
...+.++.+...+.|.-++.....+.||+.+| +|||.++.- . ..+.++-....+.+...+..++.+.+..+- .+.
T Consensus 269 ~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g-~pvi~~~~~-~-~~e~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~ 345 (381)
T COG0438 269 ELAELLASADVFVLPSLSEGFGLVLLEAMAAG-TPVIASDVG-G-IPEVVEDGETGLLVPPGDVEELADALEQLLEDPEL 345 (381)
T ss_pred HHHHHHHhCCEEEeccccccchHHHHHHHhcC-CcEEECCCC-C-hHHHhcCCCceEecCCCCHHHHHHHHHHHhcCHHH
Confidence 45667888899999854332223399999999 899888753 1 222222221222344435555555444442 233
Q ss_pred HHHHHH-HHHHHhhhcccc
Q 048582 504 YIRMHR-RVVQVRRHFEFN 521 (555)
Q Consensus 504 i~~Mrr-~l~~v~~hf~y~ 521 (555)
..++.+ ....+..+|.|.
T Consensus 346 ~~~~~~~~~~~~~~~~~~~ 364 (381)
T COG0438 346 REELGEAARERVEEEFSWE 364 (381)
T ss_pred HHHHHHHHHHHHHHhcCHH
Confidence 455554 333444676664
No 89
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=60.86 E-value=12 Score=41.48 Aligned_cols=91 Identities=12% Similarity=0.062 Sum_probs=61.2
Q ss_pred cccHHHhcccccEEeecCCCCCCCccHHHHHHhCCe---eEEeeCCccCCCCCCCCCCceEEEecCCChhhHHHHHhc--
Q 048582 424 GVSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCV---PVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSILTS-- 498 (555)
Q Consensus 424 ~~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCI---PVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~s-- 498 (555)
..+..+.++.+.-++.|+-.+-...-+.|||++||= |||+++.--.+- . ..-.+.++..|..++.+.|..
T Consensus 351 ~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~--~---~~~g~lv~p~d~~~la~ai~~~l 425 (460)
T cd03788 351 REELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAE--E---LSGALLVNPYDIDEVADAIHRAL 425 (460)
T ss_pred HHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEeccccchh--h---cCCCEEECCCCHHHHHHHHHHHH
Confidence 346788899999999887655445668999999995 499987432221 1 233677888888776665543
Q ss_pred -CCHHHHHHHHHHHHHHhhhcc
Q 048582 499 -ISPRQYIRMHRRVVQVRRHFE 519 (555)
Q Consensus 499 -Is~~~i~~Mrr~l~~v~~hf~ 519 (555)
.++++..+|.++.++....|.
T Consensus 426 ~~~~~e~~~~~~~~~~~v~~~~ 447 (460)
T cd03788 426 TMPLEERRERHRKLREYVRTHD 447 (460)
T ss_pred cCCHHHHHHHHHHHHHHHHhCC
Confidence 356677777666666555543
No 90
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=60.08 E-value=19 Score=36.78 Aligned_cols=70 Identities=21% Similarity=0.365 Sum_probs=47.1
Q ss_pred ccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCC-----CCCCCceEEEecCCCh--hhHHHHHh
Q 048582 425 VSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSD-----VLNWKSFSVALSTRDI--PNLKSILT 497 (555)
Q Consensus 425 ~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~d-----vLDW~~fSV~Ipe~di--~~L~~iL~ 497 (555)
.++.+.|..++.+++-.|++- +.||+.+|+ |+|+-..--.+ +. .+.=..+.+.++.+++ .+|.+.|+
T Consensus 242 ~~~~~~m~~ad~vIs~~G~~t----~~Ea~~~g~-P~l~ip~~~~~-EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~ 315 (318)
T PF13528_consen 242 PDFAELMAAADLVISKGGYTT----ISEALALGK-PALVIPRPGQD-EQEYNARKLEELGLGIVLSQEDLTPERLAEFLE 315 (318)
T ss_pred HHHHHHHHhCCEEEECCCHHH----HHHHHHcCC-CEEEEeCCCCc-hHHHHHHHHHHCCCeEEcccccCCHHHHHHHHh
Confidence 468899999999999999874 899999997 88775431100 11 1334455666665555 46777776
Q ss_pred cCC
Q 048582 498 SIS 500 (555)
Q Consensus 498 sIs 500 (555)
.+|
T Consensus 316 ~~~ 318 (318)
T PF13528_consen 316 RLP 318 (318)
T ss_pred cCC
Confidence 654
No 91
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=58.25 E-value=29 Score=38.49 Aligned_cols=88 Identities=15% Similarity=0.152 Sum_probs=58.4
Q ss_pred cccHHHhcccccEEeecCCCCCCCccHHHHHHhCCee----EEeeCCccCCCCCCCCCCceEEEecCCChhhHHHHHhc-
Q 048582 424 GVSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVP----VLISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSILTS- 498 (555)
Q Consensus 424 ~~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIP----VIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~s- 498 (555)
..+....++.+.-|++|+=.+-..--..|||++|+ | ||+++.--.+ +.+. -++.|+..|...+.+.|..
T Consensus 346 ~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~-P~~g~vVlS~~~G~~--~~l~---~gllVnP~d~~~lA~aI~~a 419 (456)
T TIGR02400 346 REELMALYRAADVGLVTPLRDGMNLVAKEYVAAQD-PKDGVLILSEFAGAA--QELN---GALLVNPYDIDGMADAIARA 419 (456)
T ss_pred HHHHHHHHHhCcEEEECccccccCccHHHHHHhcC-CCCceEEEeCCCCCh--HHhC---CcEEECCCCHHHHHHHHHHH
Confidence 34678889999999988755444567999999997 8 9999753221 2232 3678888888876665543
Q ss_pred --CCHHHHHHHHHHHHHHhhh
Q 048582 499 --ISPRQYIRMHRRVVQVRRH 517 (555)
Q Consensus 499 --Is~~~i~~Mrr~l~~v~~h 517 (555)
.+.++..++.+++++...+
T Consensus 420 L~~~~~er~~r~~~~~~~v~~ 440 (456)
T TIGR02400 420 LTMPLEEREERHRAMMDKLRK 440 (456)
T ss_pred HcCCHHHHHHHHHHHHHHHhh
Confidence 3555555555555543333
No 92
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=54.37 E-value=1.2e+02 Score=31.27 Aligned_cols=130 Identities=17% Similarity=0.185 Sum_probs=81.7
Q ss_pred CCCcEEEEEeccCCCC-chhHHHHhhhcCCC--CeEEeeec-C------------CcccHHHhcccccEEeecCCCCCCC
Q 048582 384 SRRSILAFFAGGVHGP-IRPVLLEHWENKDE--DIRVHKYL-P------------KGVSYYEMMRKSKYCLCPSGYEVAS 447 (555)
Q Consensus 384 ~~R~~L~fFaG~~~g~-iR~~Ll~~~~~~d~--dv~v~~~~-p------------~~~~y~~~l~~S~FCL~P~G~~~~s 447 (555)
..|.-.++|+|...+. .|..|++.-.+... |+.+.+.. + +... .+...+-||=|...|.+ .|
T Consensus 81 ~~K~~~a~WRG~~~~~~~R~~Lv~~~~~~p~~~da~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~yKyli~~dG~~-~S 158 (256)
T smart00672 81 SDKNAYAYWRGNPTVASERLDLIKCNQSSPELVNARITIQDWPGKCDGEEDAPGFKKSP-LEEQCKHKYKINIEGVA-WS 158 (256)
T ss_pred cccCcCccccCCCCCCcchHHHHHHhcCCcccceeEEEEecCCCCChHHhcccCcCCCC-HHHHhhcceEEecCCcc-ch
Confidence 5677889999998877 89999875544322 23333211 0 0112 34456789999999987 47
Q ss_pred ccHHHHHHhCCeeEEeeCCccCCCCCC-CCCCceEEEecC--CC--hhhHHHHHhcCCHHHHHHHHHHHHHHhhh
Q 048582 448 PRVVEAIYTGCVPVLISEHYVPPFSDV-LNWKSFSVALST--RD--IPNLKSILTSISPRQYIRMHRRVVQVRRH 517 (555)
Q Consensus 448 ~Rl~EAL~aGCIPVIisD~~~LPF~dv-LDW~~fSV~Ipe--~d--i~~L~~iL~sIs~~~i~~Mrr~l~~v~~h 517 (555)
-|+.=-|.+|+|++.....|.-=|.+. ..|.-|. -|.. +| +.+..+.+++ -+++-+++-++.++..+.
T Consensus 159 ~rl~~~l~~~Svvl~~~~~~~~~~~~~L~P~~HYv-Pv~~d~sd~~l~~~i~~~~~-~~~~a~~Ia~~~~~~~~~ 231 (256)
T smart00672 159 VRLKYILACDSVVLKVKPEYYEFFSRGLQPWVHYW-PIKSDLSCRELKEAVDWGNE-HDKKAQEIGKRGSEFIQQ 231 (256)
T ss_pred hhHHHHHhcCceEEEeCCchhHHHHhcccCccceE-EeeCCCchhhHHHHHHHHHh-CHHHHHHHHHHHHHHHHH
Confidence 899999999999988885543323332 3455553 2222 23 6666666655 356666666777765544
No 93
>PLN02846 digalactosyldiacylglycerol synthase
Probab=54.18 E-value=66 Score=36.00 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=30.9
Q ss_pred HHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCc
Q 048582 428 YEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHY 467 (555)
Q Consensus 428 ~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~ 467 (555)
.+.+..+..++.|.-.+-...-+.|||++|+ |||..|.-
T Consensus 295 ~~~~~~~DvFv~pS~~Et~g~v~lEAmA~G~-PVVa~~~~ 333 (462)
T PLN02846 295 DPLFHDYKVFLNPSTTDVVCTTTAEALAMGK-IVVCANHP 333 (462)
T ss_pred HHHHHhCCEEEECCCcccchHHHHHHHHcCC-cEEEecCC
Confidence 3577777877778766666678999999998 99998754
No 94
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=47.01 E-value=54 Score=33.68 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=27.4
Q ss_pred cHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEee
Q 048582 426 SYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLIS 464 (555)
Q Consensus 426 ~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIis 464 (555)
+..+.|..+.++++..|-+ ++|++.+| +|+|+-
T Consensus 234 ~m~~lm~~aDl~Is~~G~T-----~~E~~a~g-~P~i~i 266 (279)
T TIGR03590 234 NMAELMNEADLAIGAAGST-----SWERCCLG-LPSLAI 266 (279)
T ss_pred HHHHHHHHCCEEEECCchH-----HHHHHHcC-CCEEEE
Confidence 5678999999999987732 99999999 587764
No 95
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=38.05 E-value=33 Score=30.06 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=26.6
Q ss_pred cceeecCCCCCCcCCCCCCccccchhHHHHHHhhcC-ccCCCCcCCCceEEEe
Q 048582 222 KVFVYEEGEPPVFHDGPCKSIYSMEGNFIYTMEVNK-QFRTKEADKAHVFFLP 273 (555)
Q Consensus 222 kVYVY~~g~~p~~~~gp~~~~Y~~E~~f~~~~~~~S-~~rT~DPeeA~lFfVP 273 (555)
|||+.-.|-. .+.|.+|. +...+.+. --.|.+|++||++++=
T Consensus 1 Kv~i~T~GC~--------~N~~Dse~--i~~~l~~~G~~~~~~~e~AD~iiiN 43 (98)
T PF00919_consen 1 KVYIETLGCQ--------MNQYDSER--IASILQAAGYEIVDDPEEADVIIIN 43 (98)
T ss_pred CEEEEECCCc--------ccHHHHHH--HHHHHHhcCCeeecccccCCEEEEE
Confidence 5666665543 24566665 33444333 3589999999999973
No 96
>PRK10718 RpoE-regulated lipoprotein; Provisional
Probab=34.00 E-value=52 Score=32.55 Aligned_cols=35 Identities=31% Similarity=0.645 Sum_probs=24.5
Q ss_pred chhhHHHHHHHHHHHHhheeecCCCCCCCccccccCCccccc
Q 048582 11 SSFKVLLFMIPLAVLFGFVSVMGPRASTSPVILSNHPWLWSS 52 (555)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (555)
+++|++|+..|| +++||... ++|-..+-.||=|-+
T Consensus 2 ~~~r~~ll~~~l-~LsGC~~~------s~~~~S~lnP~NWFg 36 (191)
T PRK10718 2 KSLRLLLLALPL-LLTGCSTL------SSFSWSALSPWNWFG 36 (191)
T ss_pred cchhhHHHHHHH-HHhhccCC------CCccccccCcccccC
Confidence 357888888887 46888765 345555667887763
No 97
>PF15582 Imm40: Immunity protein 40
Probab=33.94 E-value=41 Score=35.00 Aligned_cols=62 Identities=16% Similarity=0.247 Sum_probs=36.8
Q ss_pred cHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCCCCCCCCceEEEecCCChhhHHHHHh-cCCHHHH
Q 048582 426 SYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSILT-SISPRQY 504 (555)
Q Consensus 426 ~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~-sIs~~~i 504 (555)
...+++++||||+|--.....+. ..||+|. ..|+..|..+.-..+..|++ +|=+++.
T Consensus 261 ~~Y~LF~DSTF~F~NiNG~~~~~-------------------~Im~~D~---~~Ysf~vs~~~s~~v~~Iyn~GIYDK~~ 318 (327)
T PF15582_consen 261 KMYDLFCDSTFCFCNINGTHTRF-------------------SIMHSDI---DNYSFDVSDNSSKIVRWIYNRGIYDKED 318 (327)
T ss_pred HHHHHhhhceEEEEEecCceeee-------------------eeeeccc---cceeeEEEecChHHHHHHHhcccccchh
Confidence 46799999999999765554433 3467754 33444443333233444443 4667777
Q ss_pred HHHHH
Q 048582 505 IRMHR 509 (555)
Q Consensus 505 ~~Mrr 509 (555)
.+||+
T Consensus 319 ~~~~~ 323 (327)
T PF15582_consen 319 RIRRF 323 (327)
T ss_pred hhhhh
Confidence 66654
No 98
>PLN02501 digalactosyldiacylglycerol synthase
Probab=32.45 E-value=1.2e+02 Score=36.09 Aligned_cols=38 Identities=24% Similarity=0.257 Sum_probs=30.0
Q ss_pred HHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCC
Q 048582 428 YEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEH 466 (555)
Q Consensus 428 ~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~ 466 (555)
.+.++.+...+.|.-.+-...-+.|||++|| |||..|.
T Consensus 613 ~~lyasaDVFVlPS~sEgFGlVlLEAMA~Gl-PVVATd~ 650 (794)
T PLN02501 613 DDSLHGYKVFINPSISDVLCTATAEALAMGK-FVVCADH 650 (794)
T ss_pred HHHHHhCCEEEECCCcccchHHHHHHHHcCC-CEEEecC
Confidence 3577777777777666655677999999999 9999885
No 99
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=30.24 E-value=2.1e+02 Score=29.56 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=25.7
Q ss_pred cHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCc
Q 048582 426 SYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHY 467 (555)
Q Consensus 426 ~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~ 467 (555)
+...+|..|.+.+.++| ++ ..||+++|+ |||+.+..
T Consensus 270 ~~~~l~~~ad~~v~~Sg-gi----~~Ea~~~g~-PvI~~~~~ 305 (363)
T cd03786 270 YFLLLLKNADLVLTDSG-GI----QEEASFLGV-PVLNLRDR 305 (363)
T ss_pred HHHHHHHcCcEEEEcCc-cH----HhhhhhcCC-CEEeeCCC
Confidence 45567888999999988 32 456666555 99998753
No 100
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=27.43 E-value=1.8e+02 Score=34.79 Aligned_cols=88 Identities=14% Similarity=0.074 Sum_probs=55.6
Q ss_pred ccHHHhcccccEEeecCCCCCCCccHHHHHHhCCee----EEeeCCccCCCCCCCCCCceEEEecCCChhhHHHHHh---
Q 048582 425 VSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVP----VLISEHYVPPFSDVLNWKSFSVALSTRDIPNLKSILT--- 497 (555)
Q Consensus 425 ~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIP----VIisD~~~LPF~dvLDW~~fSV~Ipe~di~~L~~iL~--- 497 (555)
.++..+++.+.-|++|+=.+-..--..|||++|+ | +|+++---.+ +++ ..-++.|+..|+..+-+.|.
T Consensus 367 ~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~-p~~gvlVlSe~~G~~--~~l--~~~allVnP~D~~~lA~AI~~aL 441 (797)
T PLN03063 367 NYLCALYAITDVMLVTSLRDGMNLVSYEFVACQK-AKKGVLVLSEFAGAG--QSL--GAGALLVNPWNITEVSSAIKEAL 441 (797)
T ss_pred HHHHHHHHhCCEEEeCccccccCcchhhHheeec-CCCCCEEeeCCcCch--hhh--cCCeEEECCCCHHHHHHHHHHHH
Confidence 4677899999999998744333455999999998 6 8887642111 122 34588998888876555332
Q ss_pred cCCHHHHHHHHHHHHHHhhh
Q 048582 498 SISPRQYIRMHRRVVQVRRH 517 (555)
Q Consensus 498 sIs~~~i~~Mrr~l~~v~~h 517 (555)
..++++..++.+++.+....
T Consensus 442 ~m~~~er~~r~~~~~~~v~~ 461 (797)
T PLN03063 442 NMSDEERETRHRHNFQYVKT 461 (797)
T ss_pred hCCHHHHHHHHHHHHHhhhh
Confidence 23555555544444443333
No 101
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=27.10 E-value=1.1e+02 Score=33.01 Aligned_cols=87 Identities=15% Similarity=0.175 Sum_probs=51.9
Q ss_pred cHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCc-cC-----------CCCC---CCCCCceEEEecCCCh-
Q 048582 426 SYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHY-VP-----------PFSD---VLNWKSFSVALSTRDI- 489 (555)
Q Consensus 426 ~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~-~L-----------PF~d---vLDW~~fSV~Ipe~di- 489 (555)
+..+.|..+.+++|+.|.. ..|++.+|+ |+|+.... .+ ||-. +|-=+.....+-+++.
T Consensus 260 ~~~~~l~aADl~V~~SGt~-----tlEa~a~G~-P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~ 333 (385)
T TIGR00215 260 DARKAMFAADAALLASGTA-----ALEAALIKT-PMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECT 333 (385)
T ss_pred hHHHHHHhCCEEeecCCHH-----HHHHHHcCC-CEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCC
Confidence 3457999999999999864 349999998 88887532 11 2211 0111222233333332
Q ss_pred -hhHHHHHhcC--CH----HHHHHHHHHHHHHhhhc
Q 048582 490 -PNLKSILTSI--SP----RQYIRMHRRVVQVRRHF 518 (555)
Q Consensus 490 -~~L~~iL~sI--s~----~~i~~Mrr~l~~v~~hf 518 (555)
.+|.+.+..+ .+ +...+|++.+.++++.+
T Consensus 334 ~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l 369 (385)
T TIGR00215 334 PHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRI 369 (385)
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHh
Confidence 1233322222 34 67889999999998876
No 102
>PRK14762 membrane protein; Provisional
Probab=24.67 E-value=30 Score=23.26 Aligned_cols=21 Identities=29% Similarity=0.703 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHhheeecC
Q 048582 13 FKVLLFMIPLAVLFGFVSVMG 33 (555)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~ 33 (555)
||+++..|-.|.+.|+..|.|
T Consensus 1 mki~lw~i~iifligllvvtg 21 (27)
T PRK14762 1 MKIILWAVLIIFLIGLLVVTG 21 (27)
T ss_pred CeeHHHHHHHHHHHHHHHHHH
Confidence 566666666666666555544
No 103
>PRK10175 lipoprotein; Provisional
Probab=23.08 E-value=42 Score=28.43 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHhheeecCCC
Q 048582 13 FKVLLFMIPLAVLFGFVSVMGPR 35 (555)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~ 35 (555)
||++++.+=+++++||-||++-.
T Consensus 1 ~~~~~~~~~~~~lsGCgSi~s~t 23 (75)
T PRK10175 1 MRLIVVSIMVTLLSGCGSIISRT 23 (75)
T ss_pred CeeHHHHHHHHHhccchhhhhcc
Confidence 68888889999999999998654
No 104
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=22.30 E-value=1.8e+02 Score=33.52 Aligned_cols=44 Identities=32% Similarity=0.692 Sum_probs=32.6
Q ss_pred cccHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCC
Q 048582 424 GVSYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPP 470 (555)
Q Consensus 424 ~~~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LP 470 (555)
+.+|.++|+++|-= +--|+..-++.=+|||..|| |+|...+..|
T Consensus 332 ~~ef~~lL~~akvf-iGlGfP~EgPaPlEAia~G~--vFlNp~~~pp 375 (559)
T PF15024_consen 332 GDEFQQLLRKAKVF-IGLGFPYEGPAPLEAIANGC--VFLNPRFNPP 375 (559)
T ss_pred HHHHHHHHHhhhEe-eecCCCCCCCChHHHHHcCC--ccccccCCCC
Confidence 35789999999864 44476677888999999999 5565555444
No 105
>PRK15396 murein lipoprotein; Provisional
Probab=21.26 E-value=1.5e+02 Score=25.31 Aligned_cols=42 Identities=12% Similarity=0.260 Sum_probs=32.4
Q ss_pred hhhccccccccchhhHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 048582 145 AVAAATNETHAVPMKAERKRAVTKLEKLEAGLQRARVAIKEA 186 (555)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~A~~~i~ea 186 (555)
+.+.-+|....+.+..++.....+.++++..+..+|.++..|
T Consensus 17 LLaGCAs~~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a 58 (78)
T PRK15396 17 LLAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAA 58 (78)
T ss_pred HHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888888888888888777765544
No 106
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=20.90 E-value=1.1e+02 Score=25.92 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=23.7
Q ss_pred cchhhHHhhhhhhhHHHHHHHHHHHHHH
Q 048582 155 AVPMKAERKRAVTKLEKLEAGLQRARVA 182 (555)
Q Consensus 155 ~~~~~~~~~~~~~~l~~l~~~l~~A~~~ 182 (555)
+.++..|..+.+.++.++|.+|++.+++
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567888888999999999999998876
No 107
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=20.33 E-value=1.2e+02 Score=24.50 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=23.0
Q ss_pred chhhHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 048582 156 VPMKAERKRAVTKLEKLEAGLQRARVAIKEA 186 (555)
Q Consensus 156 ~~~~~~~~~~~~~l~~l~~~l~~A~~~i~ea 186 (555)
..+.|.+..-..+|+..|.++.+|+.+++.+
T Consensus 28 ltiEqRLa~LE~rL~~ae~ra~~ae~~~~~~ 58 (60)
T PF11471_consen 28 LTIEQRLAALEQRLQAAEQRAQAAEARAKQA 58 (60)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577777777777778888888887777664
No 108
>PF09574 DUF2374: Protein of unknown function (Duf2374); InterPro: IPR014175 This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC 7966.
Probab=20.24 E-value=36 Score=25.47 Aligned_cols=13 Identities=38% Similarity=0.843 Sum_probs=11.0
Q ss_pred HHHHHHHHhheee
Q 048582 19 MIPLAVLFGFVSV 31 (555)
Q Consensus 19 ~~~~~~~~~~~~~ 31 (555)
-+|.|+++||+.|
T Consensus 16 AmPvI~L~GF~~V 28 (42)
T PF09574_consen 16 AMPVIILSGFAAV 28 (42)
T ss_pred cchHHHHhhHHHH
Confidence 3699999999876
No 109
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=20.05 E-value=4e+02 Score=28.78 Aligned_cols=83 Identities=12% Similarity=0.281 Sum_probs=57.9
Q ss_pred cHHHhcccccEEeecCCCCCCCccHHHHHHhCCeeEEeeCCccCCCC---C------CCCCCceEEEecCCChh--hHHH
Q 048582 426 SYYEMMRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISEHYVPPFS---D------VLNWKSFSVALSTRDIP--NLKS 494 (555)
Q Consensus 426 ~y~~~l~~S~FCL~P~G~~~~s~Rl~EAL~aGCIPVIisD~~~LPF~---d------vLDW~~fSV~Ipe~di~--~L~~ 494 (555)
++.+.|+.|.-++|=+|-. -+.|...+| +|+|+- .+|+. + .+-=..++..+.++++. +|.+
T Consensus 245 dm~~~~~~ADLvIsRaGa~----Ti~E~~a~g-~P~Ili---P~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~ 316 (357)
T COG0707 245 DMAALLAAADLVISRAGAL----TIAELLALG-VPAILV---PYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAE 316 (357)
T ss_pred hHHHHHHhccEEEeCCccc----HHHHHHHhC-CCEEEe---CCCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHHH
Confidence 5889999999999998864 277876665 699983 33433 0 01224578899998843 5555
Q ss_pred HHhcCC--HHHHHHHHHHHHHHhh
Q 048582 495 ILTSIS--PRQYIRMHRRVVQVRR 516 (555)
Q Consensus 495 iL~sIs--~~~i~~Mrr~l~~v~~ 516 (555)
.|..+- ++++.+|.++.+.+..
T Consensus 317 ~i~~l~~~~~~l~~m~~~a~~~~~ 340 (357)
T COG0707 317 LILRLLSNPEKLKAMAENAKKLGK 340 (357)
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCC
Confidence 555543 5899999998887643
Done!