BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048587
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W6K|A Chain A, Structure Of Human Osc In Complex With Lanosterol
Length = 732
Score = 119 bits (299), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 89/148 (60%), Gaps = 4/148 (2%)
Query: 5 GSQTWDCAFAVQALLAC--NLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGG 62
GSQ WD AFA+QALL + E L KAH+FL+ SQV DNPP D++ +R KGG
Sbjct: 383 GSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNPP-DYQKYYRQMRKGG 441
Query: 63 WTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGV 122
++FS D GW VSDCTAEAL L P + E + ER DAV +++M++ GG
Sbjct: 442 FSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVT-EHIPRERLCDAVAVLLNMRNPDGGF 500
Query: 123 PAWEPRRAPSWLESLNPIEFFDEVIIEH 150
+E +R LE LNP E F +++I++
Sbjct: 501 ATYETKRGGHLLELLNPSEVFGDIMIDY 528
>pdb|1W6J|A Chain A, Structure Of Human Osc In Complex With Ro 48-8071
Length = 732
Score = 119 bits (299), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 89/148 (60%), Gaps = 4/148 (2%)
Query: 5 GSQTWDCAFAVQALLAC--NLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGG 62
GSQ WD AFA+QALL + E L KAH+FL+ SQV DNPP D++ +R KGG
Sbjct: 383 GSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNPP-DYQKYYRQMRKGG 441
Query: 63 WTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGV 122
++FS D GW VSDCTAEAL L P + E + ER DAV +++M++ GG
Sbjct: 442 FSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVT-EHIPRERLCDAVAVLLNMRNPDGGF 500
Query: 123 PAWEPRRAPSWLESLNPIEFFDEVIIEH 150
+E +R LE LNP E F +++I++
Sbjct: 501 ATYETKRGGHLLELLNPSEVFGDIMIDY 528
>pdb|1US2|A Chain A, Xylanase10c (Mutant E385a) From Cellvibrio Japonicus In
Complex With Xylopentaose
Length = 530
Score = 29.3 bits (64), Expect = 0.89, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 101 EPERYYDAVNCIISMQ--SQTGGVPAWEPRRAPSWLESLNPIEFFDEVI 147
+ +RY D V + +Q GG+ W A +WL+ L +F DE I
Sbjct: 442 QKKRYCDVVKAYLDTVPVNQRGGISVWGTTDANTWLDGLYREQFEDEKI 490
>pdb|1US3|A Chain A, Native Xylanase10c From Cellvibrio Japonicus
Length = 530
Score = 29.3 bits (64), Expect = 0.90, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 101 EPERYYDAVNCIISMQ--SQTGGVPAWEPRRAPSWLESLNPIEFFDEVI 147
+ +RY D V + +Q GG+ W A +WL+ L +F DE I
Sbjct: 442 QKKRYCDVVKAYLDTVPVNQRGGISVWGTTDANTWLDGLYREQFEDEKI 490
>pdb|3FKQ|A Chain A, Crystal Structure Of Ntrc-Like Two-Domain Protein
(Rer070207001320) From Eubacterium Rectale At 2.10 A
Resolution
Length = 373
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 113 ISMQSQTGGVPAWEPRRAPSWLESLNPIEFFDEVI 147
IS+++ GG P +E +E+L EFF+E++
Sbjct: 339 ISIKT-IGGAPRYEHATVRQIIEALTKXEFFEEIL 372
>pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
pdb|4B1B|B Chain B, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
Length = 542
Score = 27.3 bits (59), Expect = 3.0, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 49 GDFESMFRHTSKG-GWTFSNKDHGWPVSDCTAEALLCCLYFSML 91
G S+F+ SK GW F N H W T ++ + L FS +
Sbjct: 104 GHMGSIFKLDSKAYGWKFDNLKHDWKKLVTTVQSHIRSLNFSYM 147
>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And
Compound 10
Length = 268
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 69 DHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPER 104
D GW V ++ C LPPE++ +M E+
Sbjct: 151 DFGWSVHAPSSRRXXLCGTLDYLPPEMIEGRMHDEK 186
>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1G|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 69 DHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPER 104
D GW V ++ C LPPE++ +M E+
Sbjct: 154 DFGWSVHAPSSRRXXLCGTLDYLPPEMIEGRMHDEK 189
>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287,
Thr288 And Bound To Tpx2 1-43
pdb|1OL7|A Chain A, Structure Of Human Aurora-A 122-403 Phosphorylated On
Thr287, Thr288
Length = 282
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 69 DHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPER 104
D GW V ++ C LPPE++ +M E+
Sbjct: 153 DFGWSVHAPSSRRXXLCGTLDYLPPEMIEGRMHDEK 188
>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly,
Lys240->arg, Met302- >leu) In Complex With
1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]-
Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea
pdb|3DJ5|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 290.
pdb|3DJ6|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 823.
pdb|3DJ7|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 130.
pdb|3D15|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
1-(3-Chloro-Phenyl)-3-
{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)-
Ethyl]-Thiazol-2- Yl}-Urea [sns-314]
pdb|3D2I|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With 1-{5-[2-(1-Methyl-1h-
Pyrazolo[4,
3-D]pyrimidin-7-Ylamino)-Ethyl]-Thiazol-2-Yl}-3-
(3-Trifluoromethyl-Phenyl)-Urea
pdb|3D2K|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
[7-(2-{2-[3-(3-Chloro-
Phenyl)-Ureido]-Thiazol-5-Yl}-Ethylamino)-Pyrazolo[4,3-
D]pyrimidin-1-Yl]-Acetic Acid
Length = 272
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 69 DHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPER 104
D GW V ++ C LPPE++ +M E+
Sbjct: 155 DFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEK 190
>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And
Tpx2
Length = 268
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 69 DHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPER 104
D GW V ++ C LPPE++ +M E+
Sbjct: 151 DFGWSVHAPSSRRTXLCGTLDYLPPEMIEGRMHDEK 186
>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase
pdb|2NP8|A Chain A, Structural Basis For The Inhibition Of Aurora A Kinase By
A Novel Class Of High Affinity Disubstituted Pyrimidine
Inhibitors
pdb|2X81|A Chain A, Structure Of Aurora A In Complex With Mln8054
pdb|3MYG|A Chain A, Aurora A Kinase Complexed With Sch 1473759
pdb|3VAP|A Chain A, Synthesis And Sar Studies Of Imidazo-[1,2-A]-Pyrazine
Aurora Kinase Inhibitors With Improved Off Target Kinase
Selectivity
Length = 272
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 69 DHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPER 104
D GW V ++ C LPPE++ +M E+
Sbjct: 155 DFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEK 190
>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor
pdb|2X6E|A Chain A, Aurora-A Bound To An Inhibitor
Length = 285
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 69 DHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPER 104
D GW V ++ C LPPE++ +M E+
Sbjct: 156 DFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEK 191
>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine
Inhibitor
Length = 283
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 69 DHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPER 104
D GW V ++ C LPPE++ +M E+
Sbjct: 154 DFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEK 189
>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358
pdb|2J50|B Chain B, Structure Of Aurora-2 In Complex With Pha-739358
Length = 280
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 69 DHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPER 104
D GW V ++ C LPPE++ +M E+
Sbjct: 151 DFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEK 186
>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine-
Threonine Kinase
Length = 297
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 69 DHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPER 104
D GW V ++ C LPPE++ +M E+
Sbjct: 168 DFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEK 203
>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form)
Length = 285
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 69 DHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPER 104
D GW V ++ C LPPE++ +M E+
Sbjct: 156 DFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEK 191
>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O50|B Chain B, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O51|A Chain A, Crystal Structure Of Anthranilamide 10 Bound To Auroraa
pdb|3EFW|A Chain A, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
pdb|3EFW|B Chain B, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
Length = 267
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 69 DHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPER 104
D GW V ++ C LPPE++ +M E+
Sbjct: 150 DFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEK 185
>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1E|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1F|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 69 DHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPER 104
D GW V ++ C LPPE++ +M E+
Sbjct: 154 DFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEK 189
>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626
pdb|2J4Z|B Chain B, Structure Of Aurora-2 In Complex With Pha-680626
Length = 306
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 69 DHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPER 104
D GW V ++ C LPPE++ +M E+
Sbjct: 177 DFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEK 212
>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors
Length = 283
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 69 DHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPER 104
D GW V ++ C LPPE++ +M E+
Sbjct: 154 DFGWSVHAPSSRRAALCGTLDYLPPEMIEGRMHDEK 189
>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant
Length = 262
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 69 DHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPER 104
D GW V ++ C LPPE++ +M E+
Sbjct: 148 DFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEK 183
>pdb|3AOF|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Mannotriose Substrate
pdb|3AOF|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Mannotriose Substrate
Length = 317
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 94 EIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRRAPSW-------LESLNPIEF 142
E++ E ++ R D + II ++ GG+ A E P W + NP EF
Sbjct: 148 ELLEEALKVIRSIDKKHTIIIGTAEWGGISALEKLSVPKWEKNSIVTIHYYNPFEF 203
>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
pdb|3COH|B Chain B, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
Length = 268
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 69 DHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPER 104
D GW V ++ C LPPE++ +M E+
Sbjct: 151 DFGWSVHAPSSRRAALCGTLDYLPPEMIEGRMHDEK 186
>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|B Chain B, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|C Chain C, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H10|A Chain A, Aurora A Inhibitor Complex
pdb|3H10|B Chain B, Aurora A Inhibitor Complex
pdb|3H10|D Chain D, Aurora A Inhibitor Complex
pdb|3P9J|A Chain A, Aurora A Kinase Domain With Phthalazinone Pyrazole
Inhibitor
Length = 268
Score = 25.8 bits (55), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 69 DHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPER 104
D GW V ++ C LPPE++ +M E+
Sbjct: 151 DFGWSVHAPSSRRAALCGTLDYLPPEMIEGRMHDEK 186
>pdb|3AMG|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Cellobiose Substrate, Mutant Form
pdb|3AMG|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Cellobiose Substrate, Mutant Form
Length = 317
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 94 EIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRRAPSW-------LESLNPIEF 142
E++ E ++ R D + II ++ GG+ A E P W + NP EF
Sbjct: 148 ELLEEALKVIRSIDKKHTIIIGTAEWGGISALEKLSVPKWEKNSIVTIHYYNPFEF 203
>pdb|3AZR|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellobiose
pdb|3AZR|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellobiose
pdb|3AZS|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Mannotriose
pdb|3AZS|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Mannotriose
pdb|3AZT|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
pdb|3AZT|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
pdb|3AZT|C Chain C, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
pdb|3AZT|D Chain D, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
Length = 317
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 94 EIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRRAPSW-------LESLNPIEF 142
E++ E ++ R D + II ++ GG+ A E P W + NP EF
Sbjct: 148 ELLEEALKVIRSIDKKHTIIIGTAEWGGISALEKLSVPKWEKNSIVTIHYYNPFEF 203
>pdb|3MMU|A Chain A, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|B Chain B, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|C Chain C, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|D Chain D, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|E Chain E, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|F Chain F, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|G Chain G, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|H Chain H, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|A Chain A, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|B Chain B, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|C Chain C, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|D Chain D, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3AMC|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And DimerAU
pdb|3AMC|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And DimerAU
pdb|3AMD|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|C Chain C, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|D Chain D, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
Length = 317
Score = 25.8 bits (55), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 94 EIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRRAPSW-------LESLNPIEF 142
E++ E ++ R D + II ++ GG+ A E P W + NP EF
Sbjct: 148 ELLEEALKVIRSIDKKHTIIIGTAEWGGISALEKLSVPKWEKNSIVTIHYYNPFEF 203
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,876,144
Number of Sequences: 62578
Number of extensions: 192125
Number of successful extensions: 377
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 32
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)