Query 048587
Match_columns 150
No_of_seqs 126 out of 1059
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 10:55:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048587.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048587hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02993 lupeol synthase 100.0 6.8E-46 1.5E-50 332.6 13.2 150 1-150 411-560 (763)
2 PLN03012 Camelliol C synthase 100.0 1.1E-44 2.5E-49 324.3 13.2 150 1-150 411-560 (759)
3 TIGR03463 osq_cycl 2,3-oxidosq 100.0 1.8E-37 3.9E-42 275.7 12.6 148 1-150 299-447 (634)
4 TIGR01787 squalene_cyclas squa 100.0 2.9E-36 6.2E-41 267.6 12.9 145 1-150 289-435 (621)
5 TIGR01507 hopene_cyclase squal 100.0 2E-34 4.2E-39 256.4 13.0 140 1-150 309-448 (635)
6 cd02892 SQCY_1 Squalene cyclas 100.0 8.2E-33 1.8E-37 246.0 12.7 147 1-150 301-447 (634)
7 KOG0497 Oxidosqualene-lanoster 100.0 4.1E-33 8.8E-38 244.5 9.5 150 1-150 410-559 (760)
8 cd02889 SQCY Squalene cyclase 99.9 3.1E-21 6.7E-26 158.9 12.9 128 6-136 23-150 (348)
9 COG1657 SqhC Squalene cyclase 99.8 4.5E-20 9.8E-25 159.9 7.5 133 1-150 193-326 (517)
10 PF13249 Prenyltrans_2: Prenyl 99.7 6.8E-17 1.5E-21 113.1 5.7 92 5-124 20-113 (113)
11 TIGR01507 hopene_cyclase squal 99.7 4.2E-16 9.1E-21 139.3 10.1 111 5-126 377-495 (635)
12 PLN03012 Camelliol C synthase 99.7 5.4E-16 1.2E-20 140.1 10.5 107 7-125 617-723 (759)
13 PLN02993 lupeol synthase 99.6 3E-15 6.6E-20 135.4 10.9 109 5-125 615-723 (763)
14 TIGR03463 osq_cycl 2,3-oxidosq 99.6 9E-15 2E-19 130.8 10.1 102 7-125 504-605 (634)
15 TIGR01787 squalene_cyclas squa 99.5 9.2E-14 2E-18 124.1 10.7 102 7-124 487-588 (621)
16 cd02889 SQCY Squalene cyclase 99.4 1.2E-12 2.5E-17 107.9 10.8 102 6-124 217-318 (348)
17 cd00688 ISOPREN_C2_like This g 99.4 1.8E-12 4E-17 101.6 10.9 103 4-128 23-129 (300)
18 cd02897 A2M_2 Proteins similar 99.4 4.2E-12 9.1E-17 103.3 10.5 65 49-125 215-279 (292)
19 cd02892 SQCY_1 Squalene cyclas 99.4 4E-12 8.6E-17 113.8 11.0 103 6-124 502-604 (634)
20 PF13243 Prenyltrans_1: Prenyl 99.3 2.9E-13 6.2E-18 94.6 0.3 68 31-125 1-68 (109)
21 cd00688 ISOPREN_C2_like This g 99.3 2.3E-11 5.1E-16 95.3 10.5 100 5-122 79-179 (300)
22 PF13249 Prenyltrans_2: Prenyl 99.3 1.1E-11 2.4E-16 86.5 6.0 64 35-127 1-66 (113)
23 KOG0497 Oxidosqualene-lanoster 99.2 8E-11 1.7E-15 104.8 7.8 107 8-126 617-723 (760)
24 cd02896 complement_C3_C4_C5 Pr 99.1 2.7E-10 5.9E-15 93.3 9.8 115 5-127 78-229 (297)
25 PF13243 Prenyltrans_1: Prenyl 99.0 2E-10 4.4E-15 80.0 3.7 85 6-118 24-108 (109)
26 cd02897 A2M_2 Proteins similar 99.0 4.7E-09 1E-13 85.4 9.8 101 8-129 23-128 (292)
27 TIGR02474 pec_lyase pectate ly 98.9 2.1E-09 4.6E-14 88.1 6.4 63 74-141 42-104 (290)
28 cd02896 complement_C3_C4_C5 Pr 98.8 3E-08 6.5E-13 81.2 8.7 98 6-125 187-284 (297)
29 cd02891 A2M_like Proteins simi 98.8 4.7E-08 1E-12 78.2 9.7 81 27-129 47-127 (282)
30 cd02891 A2M_like Proteins simi 98.8 4.5E-08 9.7E-13 78.3 9.2 95 5-117 76-172 (282)
31 cd02890 PTase Protein prenyltr 98.8 4.9E-08 1.1E-12 79.0 9.4 94 5-125 74-168 (286)
32 cd02890 PTase Protein prenyltr 98.8 5.2E-08 1.1E-12 78.9 9.3 95 5-124 24-119 (286)
33 TIGR02474 pec_lyase pectate ly 98.6 3.6E-07 7.8E-12 75.0 9.3 89 24-122 62-156 (290)
34 cd02894 GGTase-II Geranylgeran 98.6 3.7E-07 8.1E-12 74.4 9.1 94 6-125 77-170 (287)
35 cd02893 FTase Protein farnesyl 98.4 3.8E-06 8.3E-11 69.2 9.9 97 5-125 24-120 (299)
36 cd02893 FTase Protein farnesyl 98.3 6.5E-06 1.4E-10 67.8 9.6 93 5-124 73-167 (299)
37 COG1657 SqhC Squalene cyclase 98.3 5E-07 1.1E-11 79.2 3.2 98 4-126 325-424 (517)
38 cd02894 GGTase-II Geranylgeran 98.3 5.5E-06 1.2E-10 67.6 8.8 90 6-123 127-216 (287)
39 PF07678 A2M_comp: A-macroglob 98.2 1.8E-06 3.9E-11 69.0 5.6 98 5-115 24-125 (246)
40 PLN03201 RAB geranylgeranyl tr 98.1 1.4E-05 3.1E-10 66.3 8.8 92 6-125 83-174 (316)
41 PLN03201 RAB geranylgeranyl tr 98.1 2.4E-05 5.2E-10 65.0 8.9 89 8-124 37-125 (316)
42 cd02895 GGTase-I Geranylgerany 98.0 3.3E-05 7.1E-10 63.9 9.1 99 5-125 89-187 (307)
43 cd02895 GGTase-I Geranylgerany 97.9 0.00011 2.5E-09 60.7 9.9 106 5-126 24-135 (307)
44 PF07678 A2M_comp: A-macroglob 97.8 0.00013 2.9E-09 58.2 8.6 102 5-124 129-230 (246)
45 PLN02710 farnesyltranstransfer 97.8 0.00018 3.9E-09 62.4 9.8 95 5-125 118-213 (439)
46 PLN02710 farnesyltranstransfer 97.8 0.00015 3.2E-09 62.9 9.2 97 5-125 69-165 (439)
47 PF09492 Pec_lyase: Pectic aci 97.7 5.5E-05 1.2E-09 62.2 4.2 59 74-137 37-95 (289)
48 PF09492 Pec_lyase: Pectic aci 97.5 0.00013 2.7E-09 60.2 4.5 105 11-125 41-158 (289)
49 KOG0366 Protein geranylgeranyl 97.4 0.0012 2.6E-08 53.9 8.2 92 5-126 92-185 (329)
50 PF00432 Prenyltrans: Prenyltr 97.3 0.00017 3.8E-09 42.8 2.6 22 105-126 3-24 (44)
51 COG5029 CAL1 Prenyltransferase 97.2 0.0019 4.1E-08 53.7 8.4 95 5-126 101-197 (342)
52 KOG0365 Beta subunit of farnes 97.2 0.0036 7.8E-08 52.8 9.3 117 5-146 97-224 (423)
53 PF00432 Prenyltrans: Prenyltr 97.2 0.0011 2.5E-08 39.2 4.7 41 31-88 3-43 (44)
54 COG1689 Uncharacterized protei 97.0 0.0055 1.2E-07 48.9 8.3 100 7-123 122-248 (274)
55 PLN02592 ent-copalyl diphospha 96.6 0.004 8.7E-08 57.7 5.8 81 6-114 95-175 (800)
56 COG5029 CAL1 Prenyltransferase 96.2 0.027 5.8E-07 47.0 8.0 84 11-123 160-243 (342)
57 KOG0367 Protein geranylgeranyl 96.0 0.015 3.2E-07 48.3 5.2 72 31-123 176-248 (347)
58 TIGR01577 oligosac_amyl oligos 95.8 0.02 4.4E-07 51.5 5.7 94 9-118 298-395 (616)
59 PLN02279 ent-kaur-16-ene synth 95.7 0.02 4.4E-07 53.1 5.4 83 6-114 53-135 (784)
60 TIGR01535 glucan_glucosid gluc 95.2 0.068 1.5E-06 48.7 7.1 87 9-115 298-385 (648)
61 PF01122 Cobalamin_bind: Eukar 95.0 0.16 3.4E-06 42.7 8.2 88 6-124 184-279 (326)
62 KOG0366 Protein geranylgeranyl 93.8 0.28 6E-06 40.4 6.9 66 31-122 68-133 (329)
63 cd00249 AGE AGE domain; N-acyl 93.2 0.23 4.9E-06 41.3 5.7 106 5-122 49-158 (384)
64 COG1689 Uncharacterized protei 92.7 0.12 2.6E-06 41.4 3.1 67 30-124 7-75 (274)
65 PF07221 GlcNAc_2-epim: N-acyl 92.6 0.31 6.7E-06 40.3 5.7 101 7-122 19-123 (346)
66 KOG0365 Beta subunit of farnes 92.0 0.66 1.4E-05 39.5 6.8 70 28-123 218-288 (423)
67 PF01122 Cobalamin_bind: Eukar 90.9 0.91 2E-05 38.2 6.7 90 6-123 143-235 (326)
68 TIGR01535 glucan_glucosid gluc 90.6 1.1 2.4E-05 40.9 7.5 81 25-122 247-333 (648)
69 PLN02592 ent-copalyl diphospha 90.6 0.14 3E-06 47.8 1.7 42 73-124 95-136 (800)
70 PLN02279 ent-kaur-16-ene synth 89.0 0.18 3.9E-06 47.0 1.2 24 102-125 72-95 (784)
71 TIGR01577 oligosac_amyl oligos 87.4 0.79 1.7E-05 41.3 4.2 36 77-123 299-334 (616)
72 KOG1366 Alpha-macroglobulin [P 86.7 1.5 3.3E-05 43.5 5.9 102 5-125 1095-1197(1436)
73 KOG0367 Protein geranylgeranyl 86.5 2.4 5.3E-05 35.5 6.2 70 29-127 228-301 (347)
74 PF07470 Glyco_hydro_88: Glyco 85.2 1.9 4.1E-05 35.6 5.1 80 27-121 213-294 (336)
75 KOG1366 Alpha-macroglobulin [P 80.1 4.5 9.7E-05 40.4 6.1 55 72-132 999-1053(1436)
76 cd04794 euk_LANCL eukaryotic L 74.0 40 0.00086 27.8 9.5 46 78-127 167-212 (343)
77 COG2942 N-acyl-D-glucosamine 2 72.1 26 0.00057 30.3 8.0 102 22-142 71-178 (388)
78 cd00249 AGE AGE domain; N-acyl 68.9 37 0.0008 28.0 8.2 106 10-126 243-350 (384)
79 PF07944 DUF1680: Putative gly 66.1 22 0.00049 31.4 6.7 77 24-112 78-157 (520)
80 cd04794 euk_LANCL eukaryotic L 65.9 25 0.00055 29.0 6.6 27 24-53 183-209 (343)
81 COG1331 Highly conserved prote 65.3 22 0.00048 32.8 6.5 97 10-126 412-515 (667)
82 PF05382 Amidase_5: Bacterioph 63.9 11 0.00024 28.1 3.7 43 31-90 2-44 (145)
83 PF07944 DUF1680: Putative gly 63.4 16 0.00035 32.3 5.3 98 27-129 9-109 (520)
84 cd04791 LanC_SerThrkinase Lant 63.3 40 0.00086 27.1 7.2 93 13-123 90-183 (321)
85 PF07470 Glyco_hydro_88: Glyco 61.9 14 0.00031 30.3 4.4 77 8-88 249-332 (336)
86 PF15144 DUF4576: Domain of un 57.9 12 0.00027 25.1 2.7 29 102-130 55-83 (88)
87 PLN00119 endoglucanase 56.8 96 0.0021 27.7 8.9 37 8-44 9-49 (489)
88 PLN02909 Endoglucanase 53.3 56 0.0012 29.1 6.8 99 26-125 34-146 (486)
89 PF00627 UBA: UBA/TS-N domain; 53.1 22 0.00048 19.7 2.9 20 13-38 18-37 (37)
90 PF07221 GlcNAc_2-epim: N-acyl 51.7 19 0.00041 29.6 3.5 39 6-44 78-118 (346)
91 COG3387 SGA1 Glucoamylase and 51.7 1.2E+02 0.0025 27.8 8.8 111 6-137 477-588 (612)
92 PF11329 DUF3131: Protein of u 49.1 1.3E+02 0.0028 25.9 8.2 82 5-90 30-120 (367)
93 COG2373 Large extracellular al 48.1 61 0.0013 33.2 6.8 72 27-119 1197-1269(1621)
94 COG2373 Large extracellular al 48.1 26 0.00057 35.6 4.4 61 74-134 1169-1231(1621)
95 cd00194 UBA Ubiquitin Associat 47.3 30 0.00065 18.9 2.9 21 13-39 17-37 (38)
96 COG2942 N-acyl-D-glucosamine 2 47.2 1.4E+02 0.003 25.9 8.0 100 7-122 114-216 (388)
97 PRK03430 hypothetical protein; 43.8 24 0.00053 26.6 2.7 25 15-42 27-51 (157)
98 smart00165 UBA Ubiquitin assoc 38.4 43 0.00093 18.2 2.6 8 31-38 29-36 (37)
99 KOG3760 Heparan sulfate-glucur 37.6 25 0.00054 30.9 2.1 26 102-127 379-404 (594)
100 COG3387 SGA1 Glucoamylase and 37.3 51 0.0011 30.1 4.2 36 77-123 289-324 (612)
101 cd04793 LanC LanC is the cycla 34.0 1.9E+02 0.0042 24.0 7.0 26 20-45 186-212 (382)
102 PF14850 Pro_dh-DNA_bdg: DNA-b 32.3 69 0.0015 23.0 3.4 35 11-54 16-52 (114)
103 PLN02567 alpha,alpha-trehalase 30.5 3.6E+02 0.0077 24.4 8.4 34 8-45 155-188 (554)
104 PF12899 Glyco_hydro_100: Alka 30.1 1.2E+02 0.0027 26.6 5.2 96 21-135 302-412 (436)
105 PF04361 DUF494: Protein of un 28.2 61 0.0013 24.3 2.7 25 15-42 27-51 (155)
106 cd04791 LanC_SerThrkinase Lant 28.1 3E+02 0.0066 21.8 7.0 21 25-45 158-178 (321)
107 PLN02340 endoglucanase 27.8 2.4E+02 0.0052 26.0 6.8 96 25-121 29-138 (614)
108 PF07499 RuvA_C: RuvA, C-termi 27.6 1.3E+02 0.0029 17.5 4.0 29 76-114 1-29 (47)
109 PLN02613 endoglucanase 26.9 2.6E+02 0.0057 25.0 6.8 95 25-122 25-135 (498)
110 COG3533 Uncharacterized protei 25.1 3E+02 0.0066 25.0 6.7 89 18-116 79-167 (589)
111 PF08169 RBB1NT: RBB1NT (NUC16 24.6 64 0.0014 22.4 2.0 18 28-45 78-95 (96)
112 PLN02973 beta-fructofuranosida 24.4 3.9E+02 0.0085 24.4 7.3 38 73-114 222-261 (571)
113 cd04434 LanC_like LanC-like pr 23.2 3.8E+02 0.0081 21.1 8.8 85 22-121 115-200 (343)
114 PLN02171 endoglucanase 23.0 5.9E+02 0.013 23.5 8.4 111 11-122 8-139 (629)
115 PF00759 Glyco_hydro_9: Glycos 22.8 67 0.0015 27.4 2.3 21 101-121 96-116 (444)
116 PLN02909 Endoglucanase 22.6 1.7E+02 0.0037 26.1 4.8 67 20-89 115-193 (486)
117 PLN02703 beta-fructofuranosida 22.1 2E+02 0.0043 26.4 5.1 67 55-135 486-553 (618)
118 COG4225 Predicted unsaturated 21.9 5.2E+02 0.011 22.2 8.9 78 27-119 230-307 (357)
119 PF09282 Mago-bind: Mago bindi 21.8 15 0.00033 19.6 -1.2 14 111-124 4-17 (27)
120 cd04792 LanM-like LanM-like pr 21.6 3.4E+02 0.0075 25.2 6.9 81 25-123 606-687 (825)
121 PHA01516 hypothetical protein 21.6 66 0.0014 21.8 1.6 37 3-46 52-88 (98)
122 PLN03009 cellulase 20.1 6.3E+02 0.014 22.5 9.2 27 99-125 113-139 (495)
No 1
>PLN02993 lupeol synthase
Probab=100.00 E-value=6.8e-46 Score=332.60 Aligned_cols=150 Identities=59% Similarity=1.139 Sum_probs=141.7
Q ss_pred CCcCCCchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHH
Q 048587 1 MQSFGSQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAE 80 (150)
Q Consensus 1 ~q~~~s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~ 80 (150)
||+|+||+|||||+++||+++|+.+++++.|+||++||+++|+.++++|+|..++++.++|||+||+.+++|||+||||+
T Consensus 411 ~q~~gSqvWDTa~a~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDdTAe 490 (763)
T PLN02993 411 MQSFGSQLWDTGFAIQALLASDLSDETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAE 490 (763)
T ss_pred EcCCCCchHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCchHH
Confidence 79999999999999999999999766799999999999999999888999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhccChhhhhhhhhhcC
Q 048587 81 ALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRRAPSWLESLNPIEFFDEVIIEH 150 (150)
Q Consensus 81 al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~~~~~~~~l~~~~~~e~f~~~~~~~ 150 (150)
+|+|++++...+.+.+|.++..+++.|||+||++|||+||||++||++|++.|||+|||+|+|+++|+||
T Consensus 491 ~lka~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~ 560 (763)
T PLN02993 491 ALKCCMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVER 560 (763)
T ss_pred HHHHHHHHhhCccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCC
Confidence 9999888876655556778888999999999999999999999999999999999999999999999997
No 2
>PLN03012 Camelliol C synthase
Probab=100.00 E-value=1.1e-44 Score=324.32 Aligned_cols=150 Identities=62% Similarity=1.165 Sum_probs=141.4
Q ss_pred CCcCCCchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHH
Q 048587 1 MQSFGSQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAE 80 (150)
Q Consensus 1 ~q~~~s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~ 80 (150)
||+|+||+|||+|+++||+++|+.+++.+.++||++||+++|+.++++|+|..++++.++|||+||+.+++|||+||||+
T Consensus 411 ~q~~gSqvWDTa~~~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sD~TAe 490 (759)
T PLN03012 411 MQSFGSQLWDSGFALQALLASNLSNEIPDVLRRGHDFIKNSQVGENPSGDFKNMYRHISKGAWTFSDRDHGWQASDCTAE 490 (759)
T ss_pred EcCCCCcHHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHhccCCCCChhhhhCCCCCCCcccccCCCCCCCCCCccHH
Confidence 79999999999999999999999887889999999999999999888999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhccChhhhhhhhhhcC
Q 048587 81 ALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRRAPSWLESLNPIEFFDEVIIEH 150 (150)
Q Consensus 81 al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~~~~~~~~l~~~~~~e~f~~~~~~~ 150 (150)
+|+|++.+...+.+.+|.++..+++.|||+||++|||+||||++||++|++.|||+|||+|.|+++|+||
T Consensus 491 ~Lka~lll~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~ 560 (759)
T PLN03012 491 GFKCCLLFSMIAPDIVGPKMDPEQLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEH 560 (759)
T ss_pred HHHHHHHHHhcccccccccccHHHHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCC
Confidence 9999777665554556778889999999999999999999999999999999999999999999999997
No 3
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=100.00 E-value=1.8e-37 Score=275.74 Aligned_cols=148 Identities=41% Similarity=0.693 Sum_probs=131.3
Q ss_pred CCcCCCchhHHHHHHHHHHHcCCC-CCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchH
Q 048587 1 MQSFGSQTWDCAFAVQALLACNLT-DEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTA 79 (150)
Q Consensus 1 ~q~~~s~~wdTala~~AL~~aG~~-~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta 79 (150)
||+|.|++|||+|+++||.++|+. +++++.|+||++||+++|+.++ +|+|...+++.++|||+|++.+++|||+||||
T Consensus 299 ~q~~~s~~WDTala~~AL~e~g~~~~~~~~~l~kA~~wL~~~Q~~~~-~gd~~~~~~~~~~GGW~f~~~~~~~pdsD~Ta 377 (634)
T TIGR03463 299 YNGYNSSEWDTAFAVQALAATPETAGRHRRMLERAARFLEANQMLED-TAEPQRFFRDPAKGGWCFSDGDHGWPVSDCTA 377 (634)
T ss_pred EeeCCCCchhHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHhcCCcC-CCCchhcCCCCCCCccccccCCCCCCccccHH
Confidence 689999999999999999999974 3567999999999999999753 68999899999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhccChhhhhhhhhhcC
Q 048587 80 EALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRRAPSWLESLNPIEFFDEVIIEH 150 (150)
Q Consensus 80 ~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~~~~~~~~l~~~~~~e~f~~~~~~~ 150 (150)
++|+||+++...+.. ..+++.+++++|||+||++|||+||||++|++++++.|||+|||+|+|+++|+|+
T Consensus 378 ~~L~Al~~~~~~~~~-~~~~~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~ 447 (634)
T TIGR03463 378 EALSASLVLEPLGLN-PEERVPQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDV 447 (634)
T ss_pred HHHHHHHHHhhcCCc-ccccccHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCC
Confidence 999999987642110 0023567899999999999999999999999999999999999999999999985
No 4
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=100.00 E-value=2.9e-36 Score=267.60 Aligned_cols=145 Identities=43% Similarity=0.711 Sum_probs=130.6
Q ss_pred CCcCCCchhHHHHHHHHHHHcCC--CCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccch
Q 048587 1 MQSFGSQTWDCAFAVQALLACNL--TDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCT 78 (150)
Q Consensus 1 ~q~~~s~~wdTala~~AL~~aG~--~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~T 78 (150)
||+|+||+|||+|+++||.++|. .+++++.|+||++||+++|++++++|+|..+.++..||||+|++.+++|||+|||
T Consensus 289 ~q~~~s~vWDTalai~AL~~ag~~~~~~~~~~i~ka~~wL~~~Q~~~~~~g~~~~~~~~~~pGgW~fs~~~~~~PdvdDt 368 (621)
T TIGR01787 289 MQGTGSQVWDTAFAIQALRESGDHRLPEFHPALVKAHEWLLLSQIPDNPPGDWKVYRHNLKPGGWAFSFLNCGYPDVDDT 368 (621)
T ss_pred EecCCCcHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhCCCCCCCchhhhCCCCCCCcccCccCCCCCCCchhH
Confidence 69999999999999999999995 3456899999999999999998778999987777778999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhccChhhhhhhhhhcC
Q 048587 79 AEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRRAPSWLESLNPIEFFDEVIIEH 150 (150)
Q Consensus 79 a~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~~~~~~~~l~~~~~~e~f~~~~~~~ 150 (150)
+.+++++..+... +.++..+++++|++||+++||+||||++|+++++..|||+|||+|.|+++|+||
T Consensus 369 a~~~la~~l~~~~-----~~~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~ 435 (621)
T TIGR01787 369 AVVALKAVLLLQE-----DEHVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDP 435 (621)
T ss_pred HHHHHHHHHhhcC-----cccccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhhccccccC
Confidence 9999887665421 235678999999999999999999999999999999999999999999999886
No 5
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=100.00 E-value=2e-34 Score=256.35 Aligned_cols=140 Identities=28% Similarity=0.396 Sum_probs=125.5
Q ss_pred CCcCCCchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHH
Q 048587 1 MQSFGSQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAE 80 (150)
Q Consensus 1 ~q~~~s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~ 80 (150)
||+|+||+|||+|+++||.++|++++ ++.|+||.+||+++|+.. +|+|...+++..+|||+|++.+++|||+|||++
T Consensus 309 ~~~~~s~vWDTa~ai~AL~~ag~~~~-~p~l~kA~~~L~~~Qi~~--~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~ 385 (635)
T TIGR01507 309 FQACVSPVWDTALAVLALREAGLPAD-HDALVKAGEWLLDKQITV--PGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAV 385 (635)
T ss_pred ecCCCCcHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHhhcccC--CCCccccCCCCCCCccCCCCCCCCCCCchhHHH
Confidence 58999999999999999999998776 899999999999999974 699999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhccChhhhhhhhhhcC
Q 048587 81 ALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRRAPSWLESLNPIEFFDEVIIEH 150 (150)
Q Consensus 81 al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~~~~~~~~l~~~~~~e~f~~~~~~~ 150 (150)
+|+||..++ .+ ..+..+++|+||++||+++||+||||++|+++|+..|+++||+++ .++|+|+
T Consensus 386 ~L~AL~~~~-~~----~~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d--~~~~~D~ 448 (635)
T TIGR01507 386 VVWALNGLR-LP----DERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCD--FGAVTDP 448 (635)
T ss_pred HHHHHHHcC-CC----ccccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCccc--cccccCC
Confidence 999998874 22 123467899999999999999999999999999999999998665 3477775
No 6
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=100.00 E-value=8.2e-33 Score=245.96 Aligned_cols=147 Identities=49% Similarity=0.839 Sum_probs=131.5
Q ss_pred CCcCCCchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHH
Q 048587 1 MQSFGSQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAE 80 (150)
Q Consensus 1 ~q~~~s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~ 80 (150)
+|.|+||+|||+|+++||.++|..+++++.|+||++||+++|+. +.+|+|...+++.++|||+|++.++++||+|||+.
T Consensus 301 ~~~~~s~~wDTala~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~-~~~gdw~~~~~~~~~GGW~fs~~~~~~pd~d~Ta~ 379 (634)
T cd02892 301 CQTNGSQVWDTALAVQALLEAGLAPEFDPALKKALDWLLESQIL-DNPGDWKVKYRHLRKGGWAFSTANQGYPDSDDTAE 379 (634)
T ss_pred EcCCCCchHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHcC-CCCCchhhhCCCCCCCCCCCCCCCCCCCCcCchHH
Confidence 36779999999999999999998766789999999999999984 34699999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhccChhhhhhhhhhcC
Q 048587 81 ALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRRAPSWLESLNPIEFFDEVIIEH 150 (150)
Q Consensus 81 al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~~~~~~~~l~~~~~~e~f~~~~~~~ 150 (150)
+|+||+.+...+. .|..+..+++++|++||+++||+||||++|+++++..|++.++|+|+|+++|+|+
T Consensus 380 ~l~AL~~~~~~~~--~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~ 447 (634)
T cd02892 380 ALKALLRLQELPP--FGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDP 447 (634)
T ss_pred HHHHHHHhhccCC--cchhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCC
Confidence 9999999875432 1345678999999999999999999999999999999888888999999998875
No 7
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=4.1e-33 Score=244.49 Aligned_cols=150 Identities=61% Similarity=1.101 Sum_probs=145.3
Q ss_pred CCcCCCchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHH
Q 048587 1 MQSFGSQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAE 80 (150)
Q Consensus 1 ~q~~~s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~ 80 (150)
||+++||+|||+|++++|.+++.++++.+.++|+.+||.+.|+++|++|+...+|++.++|+|+||...+|||.+||||+
T Consensus 410 mq~~~sQ~Wdt~falqalla~~~~~E~~~~l~k~~~yl~~sQv~~n~~gd~~~~yR~~~kG~wtfS~~d~gw~vsDctaE 489 (760)
T KOG0497|consen 410 MQGFNSQLWDTAFALQALLAAGLVDEFRSTLVKAYDFLKKSQVRENPPGDFKKMYRHISKGGWTFSDRDQGWPVSDCTAE 489 (760)
T ss_pred EeecchhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcccccCCCcchhhheeccccccccccccccceeeccccHH
Confidence 78999999999999999999999999999999999999999999998888888899999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhccChhhhhhhhhhcC
Q 048587 81 ALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRRAPSWLESLNPIEFFDEVIIEH 150 (150)
Q Consensus 81 al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~~~~~~~~l~~~~~~e~f~~~~~~~ 150 (150)
++.+++.+..++.+.+|++++.+++-.+|+.|+.+|+.+||+.++++.+...|||.|||+|.|+++|+||
T Consensus 490 al~~~lll~~~~~~~vg~~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~ 559 (760)
T KOG0497|consen 490 ALKCCLLLSSMPSEIVGEKIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEY 559 (760)
T ss_pred HHHHHHHhcCCChhhccCCCCHHHHHHHHHHHHhhhhccCccccccccchHHHHHhcCchhcccceeeee
Confidence 9999999988888899999999999999999999999999999999999999999999999999999997
No 8
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.86 E-value=3.1e-21 Score=158.94 Aligned_cols=128 Identities=48% Similarity=0.790 Sum_probs=109.2
Q ss_pred CchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHH
Q 048587 6 SQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCC 85 (150)
Q Consensus 6 s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL 85 (150)
+++|+|+++++||.++|..+++.+.++||++||+++|.+.+ +++|...+++.+.|||+|+...+++|++|+|+.++++|
T Consensus 23 ~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q~~~~-~~~~~~~~~~~~~Ggw~y~~~~~~~~~~~~Ta~~l~al 101 (348)
T cd02889 23 SQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQIRDN-PDDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKAL 101 (348)
T ss_pred CchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcCCCCC-CCchhhcCCCCCCCcCcccCcCCCCCCCCChHHHHHHH
Confidence 78999999999999999876778999999999999997653 34566678888899999998777889999999999999
Q ss_pred HHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhc
Q 048587 86 LYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRRAPSWLES 136 (150)
Q Consensus 86 ~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~~~~~~~~l~~ 136 (150)
..+..... .+..+..+.++++++||+++|++||||+.|...+...|++.
T Consensus 102 ~~~~~~~~--~~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~ 150 (348)
T cd02889 102 LRLQKKPP--DGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLEL 150 (348)
T ss_pred HHhhccCc--ccchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhc
Confidence 99875321 13456789999999999999999999999998887777664
No 9
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=99.81 E-value=4.5e-20 Score=159.90 Aligned_cols=133 Identities=32% Similarity=0.534 Sum_probs=121.2
Q ss_pred CCcCCCchhHHHHHHHHHHHcCCCCCcc-HHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchH
Q 048587 1 MQSFGSQTWDCAFAVQALLACNLTDEIG-PILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTA 79 (150)
Q Consensus 1 ~q~~~s~~wdTala~~AL~~aG~~~~~~-~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta 79 (150)
++.+++|+|||+|+..++..+|..+. + ++|.+++.||..+|.... .+|... ++..+|+|+|+..+.++||.|+|+
T Consensus 193 ~~~l~~q~wD~~f~~~~~~~~g~~~~-~~~aiaka~~~L~~kq~~~~--~~~~~~-~~~~~g~W~f~~~~~~ypd~d~T~ 268 (517)
T COG1657 193 AWLLGSQVWDGGFIRRALLVAGLAET-PIPAIAKALMFLLDKQVLKY--ADWAVK-RKFSPGGWGFSNINTGYPDADDTA 268 (517)
T ss_pred ccccccccccchhhhhhhhhcCcccc-chHhHHhhhhhhHHHHHHHh--hccccc-cccCCCccceeecccCCCCchhhh
Confidence 36789999999999999999999876 4 799999999999999863 788877 888899999999999999999999
Q ss_pred HHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhccChhhhhhhhhhcC
Q 048587 80 EALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRRAPSWLESLNPIEFFDEVIIEH 150 (150)
Q Consensus 80 ~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~~~~~~~~l~~~~~~e~f~~~~~~~ 150 (150)
.++++|.... +.+.+.++++|+..|||..|||.+|+.++...|++.+|+++.| +|+|+
T Consensus 269 ~~~~al~~~~-----------~~~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~--~~~~~ 326 (517)
T COG1657 269 GVVRALIGVQ-----------SLPNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVK--AMVDP 326 (517)
T ss_pred HHHHHHHhhc-----------chhhHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhcc--ccccC
Confidence 9999998876 4677888999999999999999999999999999999999988 66553
No 10
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.67 E-value=6.8e-17 Score=113.13 Aligned_cols=92 Identities=30% Similarity=0.326 Sum_probs=69.6
Q ss_pred CCchhHHHHHHHHHHHcCCCCCccHHHHHH--HHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHH
Q 048587 5 GSQTWDCAFAVQALLACNLTDEIGPILMKA--HDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEAL 82 (150)
Q Consensus 5 ~s~~wdTala~~AL~~aG~~~~~~~~i~ra--~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al 82 (150)
.+.+++|++|+++|...|..++ ..++ ++||+++|.+| |+|. . ......++++.|..++
T Consensus 20 ~~~~~~T~~al~aL~~~g~~~~----~~~~~~~~~L~~~q~~d---Gg~~------------~-~~~~~~~~~~~t~~~l 79 (113)
T PF13249_consen 20 PSDVWDTAFALLALAALGEEPD----RDRAAAVEWLLSQQNPD---GGWG------------S-NPDGGPPDVYTTYVAL 79 (113)
T ss_dssp -BEHHHHHHHHHHHHHHTSHHC----HHHHHHHHHHHHHB-TT---SGBB------------S-STTTT-BSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCccc----HHHHHHHHHHHHhCCCC---CCcc------------C-CCCCCCccHHHHHHHH
Confidence 5799999999999999998754 4555 99999999986 6654 2 1122357888999999
Q ss_pred HHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 048587 83 LCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPA 124 (150)
Q Consensus 83 ~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~ 124 (150)
.+|..++. +...+.++|+++||+++|++||||++
T Consensus 80 ~~l~~~~~--------~~~~~~~~~a~~~l~~~Q~~dGg~~y 113 (113)
T PF13249_consen 80 AALELLGR--------PDDEEAVRKAVDWLLSCQNPDGGWGY 113 (113)
T ss_dssp HHHHHHT---------GGCHTTHCCHHHHHHHTB-TTSSB-S
T ss_pred HHHHHcCC--------CcccHHHHHHHHHHHHhcCCCCCCCc
Confidence 99988763 12257899999999999999999974
No 11
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.66 E-value=4.2e-16 Score=139.28 Aligned_cols=111 Identities=22% Similarity=0.204 Sum_probs=83.4
Q ss_pred CCchhHHHHHHHHHHHcCCCC--CccHHHHHHHHHHHhhccCCCCCCCcccccCCCC---CCccccCC--CCCCCCcccc
Q 048587 5 GSQTWDCAFAVQALLACNLTD--EIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTS---KGGWTFSN--KDHGWPVSDC 77 (150)
Q Consensus 5 ~s~~wdTala~~AL~~aG~~~--~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~---~GgW~fs~--~~~~~pd~d~ 77 (150)
-+++|||+.++.||...+.++ .++++|+||++||+++|+++ |+|+.+.+++. .+--+|+. .--.+|++|+
T Consensus 377 ~pd~ddTa~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn~d---Ggw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~ 453 (635)
T TIGR01507 377 YPDVDDTAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQSSN---GGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADV 453 (635)
T ss_pred CCCchhHHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcCCC---CCEecccCCcchhHHhcCCccccccccCCCCccH
Confidence 489999999999999986432 35789999999999999986 99975432221 01112321 0113689999
Q ss_pred hHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCc-cccC
Q 048587 78 TAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGV-PAWE 126 (150)
Q Consensus 78 Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW-~~~~ 126 (150)
|+.+|++|...+. ...+++|+||++||+++|++|||| +.|.
T Consensus 454 Ta~~l~al~~~g~--------~~~~~~i~rav~~L~~~Q~~dG~W~g~wg 495 (635)
T TIGR01507 454 TARVLECLGSFGY--------DDAWPVIERAVEYLKREQEPDGSWFGRWG 495 (635)
T ss_pred HHHHHHHHHHhCC--------CchhHHHHHHHHHHHHccCCCCCCccCCC
Confidence 9999999998752 224789999999999999999999 5554
No 12
>PLN03012 Camelliol C synthase
Probab=99.65 E-value=5.4e-16 Score=140.08 Aligned_cols=107 Identities=21% Similarity=0.175 Sum_probs=86.0
Q ss_pred chhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHH
Q 048587 7 QTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCL 86 (150)
Q Consensus 7 ~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~ 86 (150)
-++.|++|+.||..+|.+....+.|+||++||+++|.+| |+|++.+..|....|. ....+.+.+..||+||+||+
T Consensus 617 y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~D---GGWGEs~~Sc~~~~y~--~~~~~~S~~~qTaWAl~aLi 691 (759)
T PLN03012 617 FTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDN---GGWGESYLSCPKKIYI--AQEGEISNLVQTAWALMGLI 691 (759)
T ss_pred CCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCC---CCcCCCCCCCCCcccc--CCCCCCCcHHHHHHHHHHHH
Confidence 456899999999999987554699999999999999997 9999887776655432 11123477889999999999
Q ss_pred HhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 048587 87 YFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAW 125 (150)
Q Consensus 87 ~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~ 125 (150)
+++... .+.++|+||++||++.|.+||+|..-
T Consensus 692 ~ag~~~-------~~~~~i~Rg~~~Ll~~Q~~dG~W~q~ 723 (759)
T PLN03012 692 HAGQAE-------RDPIPLHRAAKLIINSQLENGDFPQQ 723 (759)
T ss_pred HcCCCC-------CCcHHHHHHHHHHHHcccCCCCCCCc
Confidence 986421 24468999999999999999999764
No 13
>PLN02993 lupeol synthase
Probab=99.61 E-value=3e-15 Score=135.42 Aligned_cols=109 Identities=19% Similarity=0.118 Sum_probs=86.9
Q ss_pred CCchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHH
Q 048587 5 GSQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLC 84 (150)
Q Consensus 5 ~s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~a 84 (150)
...++.|++|+.||..+|.+++..+.|+||++||+++|.+| |+|++.+..+....|. ....+.+.+..||+||+|
T Consensus 615 v~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~D---GGWGEs~~S~~~~~y~--~~~~~~St~~qTAwAlla 689 (763)
T PLN02993 615 ICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDD---GGWGESYLSCPEQRYI--PLEGNRSNLVQTAWAMMG 689 (763)
T ss_pred cccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCC---CCcCcCcCcCCCcccc--cCCCCCCchhhHHHHHHH
Confidence 34567899999999999998664689999999999999997 9999877666554432 111234677889999999
Q ss_pred HHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 048587 85 CLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAW 125 (150)
Q Consensus 85 L~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~ 125 (150)
|++++.. ....++|+||++||++.|.+||+|..-
T Consensus 690 L~~aG~~-------~~~~~~l~Rgi~~L~~~Q~~~G~W~q~ 723 (763)
T PLN02993 690 LIHAGQA-------ERDLIPLHRAAKLIITSQLENGDFPQQ 723 (763)
T ss_pred HHHcCCC-------CCCcHHHHHHHHHHHhccCCCCCCCCc
Confidence 9998631 234578999999999999999999863
No 14
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.58 E-value=9e-15 Score=130.76 Aligned_cols=102 Identities=19% Similarity=0.169 Sum_probs=81.7
Q ss_pred chhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHH
Q 048587 7 QTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCL 86 (150)
Q Consensus 7 ~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~ 86 (150)
....|+++++||.++|.+.+ ++.|+||++||+++|.+| |+|++.+..+....+ .....+.+..||+||+||.
T Consensus 504 ~~Y~T~~al~aL~~~G~~~~-~~~i~rA~~~Ll~~Q~~D---GgWg~~~~s~~~~~y----~~~~~S~~~~TA~Al~aL~ 575 (634)
T TIGR03463 504 FTYGTFHGVMGLRAAGASPD-DMALQRAAAWLRSYQRAD---GGWGEVYESCLQARY----VEGKQSQAVMTSWALLALA 575 (634)
T ss_pred CcHHHHHHHHHHHHcCCCcC-cHHHHHHHHHHHHccCCC---CCccCccCccccccc----cCCCCCcHHHHHHHHHHHH
Confidence 45689999999999998766 799999999999999997 999854444332222 1223477889999999999
Q ss_pred HhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 048587 87 YFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAW 125 (150)
Q Consensus 87 ~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~ 125 (150)
.++. ...+.++||++||+++|++||||+.-
T Consensus 576 ~~g~---------~~~~~i~rgi~~L~~~Q~~dG~W~~~ 605 (634)
T TIGR03463 576 EAGE---------GGHDAVQRGVAWLRSRQQEDGRWPRE 605 (634)
T ss_pred HcCC---------cCCHHHHHHHHHHHHhCCCCCCCCCC
Confidence 8752 24688999999999999999999864
No 15
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.51 E-value=9.2e-14 Score=124.06 Aligned_cols=102 Identities=23% Similarity=0.259 Sum_probs=79.5
Q ss_pred chhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHH
Q 048587 7 QTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCL 86 (150)
Q Consensus 7 ~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~ 86 (150)
-++.|++++.||.++|.....++.|+||++||+++|..| |+|++.+..+....+ ...+.+++..|++||+||+
T Consensus 487 y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~D---GGWge~~~s~~~~~y----~~~~~S~~s~Ta~AL~AL~ 559 (621)
T TIGR01787 487 YTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMPD---GGWGEDCFSYEDPSY----VGSGGSTPSQTGWALMALI 559 (621)
T ss_pred CchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCCC---CCCCcCCcccccccc----CCCCCCCHHHHHHHHHHHH
Confidence 467899999999999976432589999999999999997 899764433222211 1123478889999999999
Q ss_pred HhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 048587 87 YFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPA 124 (150)
Q Consensus 87 ~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~ 124 (150)
.++. ...++|+||++||+++|++||||+.
T Consensus 560 ~ag~---------~~~~ai~rgv~~L~~~Q~~dG~w~~ 588 (621)
T TIGR01787 560 AAGE---------ADSEAIERGVKYLLETQRPDGDWPQ 588 (621)
T ss_pred HcCc---------cchHHHHHHHHHHHHhCCCCCCCCC
Confidence 8763 2356899999999999999999975
No 16
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.43 E-value=1.2e-12 Score=107.92 Aligned_cols=102 Identities=24% Similarity=0.308 Sum_probs=79.1
Q ss_pred CchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHH
Q 048587 6 SQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCC 85 (150)
Q Consensus 6 s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL 85 (150)
+..+.|++++.||..+|.... .+.++++++||+++|.++ |+|.........+.+ .....|++..|+.+|++|
T Consensus 217 ~~~y~ta~a~~aL~~~g~~~~-~~~~~~~~~~L~~~Q~~d---G~w~~~~~~~~~~~~----~~~~~~~~~~Ta~al~aL 288 (348)
T cd02889 217 CFIYGTWFALEALAAAGEDEN-SPYVRKACDWLLSKQNPD---GGWGESYESYEDPSY----AGGGRSTVVQTAWALLAL 288 (348)
T ss_pred cchHHHHHHHHHHHHcCCCcC-cHHHHHHHHHHHHccCCC---CCcCCcccccccccc----cCCCCCcHHHHHHHHHHH
Confidence 467889999999999997644 789999999999999986 888642111111111 112357899999999999
Q ss_pred HHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 048587 86 LYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPA 124 (150)
Q Consensus 86 ~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~ 124 (150)
+.++. ...+.++++++||+++||+||||+.
T Consensus 289 ~~~g~---------~~~~~v~~a~~wL~~~Q~~dG~f~~ 318 (348)
T cd02889 289 MAAGE---------PDSEAVKRGVKYLLNTQQEDGDWPQ 318 (348)
T ss_pred HhcCC---------CCHHHHHHHHHHHHHhcCCCCCcCC
Confidence 98763 2578999999999999999999986
No 17
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.42 E-value=1.8e-12 Score=101.59 Aligned_cols=103 Identities=27% Similarity=0.305 Sum_probs=83.9
Q ss_pred CCCchhHHHHHHHHHHHcCCC----CCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchH
Q 048587 4 FGSQTWDCAFAVQALLACNLT----DEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTA 79 (150)
Q Consensus 4 ~~s~~wdTala~~AL~~aG~~----~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta 79 (150)
|.+++|.|++++++|...+.. ....+.++++++||++.|..+ |+| ++.... ..+++..|+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~~d---G~~------------~~~~~~-~~~~~~~T~ 86 (300)
T cd00688 23 CGEQTWSTAWPLLALLLLLAATGIRDKADENIEKGIQRLLSYQLSD---GGF------------SGWGGN-DYPSLWLTA 86 (300)
T ss_pred CcCcHHHHHHHHHHHHHhCCcccccccchHHHHHHHHHHHhccCCC---CCc------------cCCCCC-CCcchHhHH
Confidence 789999999999999998763 245789999999999999876 555 332211 168899999
Q ss_pred HHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccCCC
Q 048587 80 EALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPR 128 (150)
Q Consensus 80 ~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~~~ 128 (150)
.++++|..++.. + ....+.++++++||+++|++||||..+...
T Consensus 87 ~~~~~l~~~~~~-----~-~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~ 129 (300)
T cd00688 87 YALKALLLAGDY-----I-AVDRIDLARALNWLLSLQNEDGGFREDGPG 129 (300)
T ss_pred HHHHHHHHcCCc-----c-ccCHHHHHHHHHHHHHccCCCCCeeeecCC
Confidence 999999998642 1 356789999999999999999999988654
No 18
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.37 E-value=4.2e-12 Score=103.27 Aligned_cols=65 Identities=14% Similarity=0.006 Sum_probs=47.7
Q ss_pred CCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 048587 49 GDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAW 125 (150)
Q Consensus 49 G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~ 125 (150)
|+|.+. +.+++|.+.......+++++||.+|++|+.++. ...+.+.++|+||.++||++|||++.
T Consensus 215 ~~W~~~---~~~~~~~~~~~~~~~~~ve~TAyaLlall~~~~---------~~~~~~~~~v~WL~~~q~~~Ggf~sT 279 (292)
T cd02897 215 KHWSRP---PPSEEGPSYYWQAPSAEVEMTAYALLALLSAGG---------EDLAEALPIVKWLAKQRNSLGGFSST 279 (292)
T ss_pred CCCCcC---CCcccccccCCCCCcchHHHHHHHHHHHHHcCC---------ccHhHHHHHHHHHHHcCCCCCCcccH
Confidence 555543 224445544444446799999999999998752 13478899999999999999999864
No 19
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.37 E-value=4e-12 Score=113.76 Aligned_cols=103 Identities=24% Similarity=0.281 Sum_probs=80.1
Q ss_pred CchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHH
Q 048587 6 SQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCC 85 (150)
Q Consensus 6 s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL 85 (150)
+.+..|++++.||..+|.....++.++|+++||+++|..| |+|.+.......+.+ ...+.+.+..||+||++|
T Consensus 502 ~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~D---GgWge~~~s~~~~~~----~~~~~s~~~~TA~AllaL 574 (634)
T cd02892 502 CYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQNPD---GGWGESYLSYEDKSY----AGGGRSTVVQTAWALLAL 574 (634)
T ss_pred ccHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcCCCC---CCCCCccccccCccc----CCCCCCcHHHHHHHHHHH
Confidence 3456899999999999976233789999999999999987 888754332222221 122346788899999999
Q ss_pred HHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 048587 86 LYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPA 124 (150)
Q Consensus 86 ~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~ 124 (150)
+.++. .+.+.++|+++||+++|++||+|..
T Consensus 575 l~~g~---------~~~~~i~r~i~wL~~~Q~~~G~w~~ 604 (634)
T cd02892 575 MAAGE---------PDSEAVERGIKYLLNTQLPDGDWPQ 604 (634)
T ss_pred HHcCC---------CChHHHHHHHHHHHHcCCCCCCCCC
Confidence 98753 2568899999999999999999976
No 20
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.31 E-value=2.9e-13 Score=94.55 Aligned_cols=68 Identities=21% Similarity=0.194 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHH
Q 048587 31 LMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVN 110 (150)
Q Consensus 31 i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~ 110 (150)
|+++++||++.|.+| |+| .++. .+++..|+.++.+|..++. +...++|+||++
T Consensus 1 i~~~~~~l~~~Q~~d---G~W------------~~~~----~~~~~~t~~~~~al~~~~~--------~~~~~ai~ka~~ 53 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPD---GSW------------GYNW----GSDVFVTAALILALAAAGD--------AAVDEAIKKAID 53 (109)
T ss_dssp -----------------------------------------------------------T--------S-SSBSSHHHHH
T ss_pred Ccccccccccccccc---ccc------------cccc----cccccccccccccccccCC--------CCcHHHHHHHHH
Confidence 689999999999997 665 3331 1467789999999888753 346788999999
Q ss_pred HHHhcccCCCCcccc
Q 048587 111 CIISMQSQTGGVPAW 125 (150)
Q Consensus 111 wL~~~Qn~dGGW~~~ 125 (150)
||++.|++||||+..
T Consensus 54 ~l~~~Q~~dG~w~~~ 68 (109)
T PF13243_consen 54 WLLSHQNPDGGWGYS 68 (109)
T ss_dssp HHHH---TTS--S-T
T ss_pred HHHHhcCCCCCCCCc
Confidence 999999999999976
No 21
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.30 E-value=2.3e-11 Score=95.29 Aligned_cols=100 Identities=23% Similarity=0.170 Sum_probs=77.4
Q ss_pred CCchhHHHHHHHHHHHcCCCC-CccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHH
Q 048587 5 GSQTWDCAFAVQALLACNLTD-EIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALL 83 (150)
Q Consensus 5 ~s~~wdTala~~AL~~aG~~~-~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~ 83 (150)
.+.+|.|++++++|...+... ...+.++|+++||+++|.++ |+|....+.... .....++++.|+.+|.
T Consensus 79 ~~~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~d---G~~~~~~~~~~~-------~~~~~~~~~~t~~al~ 148 (300)
T cd00688 79 YPSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNED---GGFREDGPGNHR-------IGGDESDVRLTAYALI 148 (300)
T ss_pred CcchHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCC---CCeeeecCCCCc-------ccCCCCcccHHHHHHH
Confidence 368999999999999987641 23688999999999999986 777643222111 1123578899999999
Q ss_pred HHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCc
Q 048587 84 CCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGV 122 (150)
Q Consensus 84 aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW 122 (150)
+|..++.. ...+.++++++||.++|++||||
T Consensus 149 aL~~~~~~--------~~~~~~~~~~~~l~~~q~~~g~~ 179 (300)
T cd00688 149 ALALLGKL--------DPDPLIEKALDYLLSCQNYDGGF 179 (300)
T ss_pred HHHHcCCC--------CCcHHHHHHHHHHHHHhcCCCCc
Confidence 99987631 12678999999999999999999
No 22
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.26 E-value=1.1e-11 Score=86.53 Aligned_cols=64 Identities=27% Similarity=0.129 Sum_probs=48.1
Q ss_pred HHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHH--HHHH
Q 048587 35 HDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDA--VNCI 112 (150)
Q Consensus 35 ~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~ra--v~wL 112 (150)
|+||+++|.+| |+| ++. ...|++.+|+.||.+|..++.. +..+++ ++||
T Consensus 1 v~~L~~~Q~~d---Ggw------------~~~---~~~~~~~~T~~al~aL~~~g~~-----------~~~~~~~~~~~L 51 (113)
T PF13249_consen 1 VDWLLSRQNPD---GGW------------GGF---GGPSDVWDTAFALLALAALGEE-----------PDRDRAAAVEWL 51 (113)
T ss_dssp HHHHHHHB-TT---SSB------------BSS---TS-BEHHHHHHHHHHHHHHTSH-----------HCHHHHHHHHHH
T ss_pred CHhhHHHcCCC---CCC------------cCC---CCCCCHHHHHHHHHHHHHhCCc-----------ccHHHHHHHHHH
Confidence 68999999997 555 432 3368999999999999998741 124455 9999
Q ss_pred HhcccCCCCccccCC
Q 048587 113 ISMQSQTGGVPAWEP 127 (150)
Q Consensus 113 ~~~Qn~dGGW~~~~~ 127 (150)
+++|++||||..+..
T Consensus 52 ~~~q~~dGg~~~~~~ 66 (113)
T PF13249_consen 52 LSQQNPDGGWGSNPD 66 (113)
T ss_dssp HHHB-TTSGBBSSTT
T ss_pred HHhCCCCCCccCCCC
Confidence 999999999999763
No 23
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.16 E-value=8e-11 Score=104.77 Aligned_cols=107 Identities=24% Similarity=0.249 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHHH
Q 048587 8 TWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLY 87 (150)
Q Consensus 8 ~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~ 87 (150)
++.|.|++-+|.++|.+.++.+.++||++||++.|..+ |+|++.+..|+...+.-+-.+ -+.++.|++|+++|+.
T Consensus 617 tY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~~Q~~~---GGWgEs~lscp~~~Yi~~~gn--~s~vv~T~wAlm~Li~ 691 (760)
T KOG0497|consen 617 TYGTWFALRGLAAAGKTYENCEAIRKACDFLLSKQNPD---GGWGESYLSCPEKRYIPLEGN--KSNVVQTAWALMALIM 691 (760)
T ss_pred HHHHHHhcchhhhcchhhhccHHHHHHHHHHHhhhccc---CCCccccccCccccccccccc--cccchhHHHHHHHHHh
Confidence 56799999999999999877899999999999999997 999999888875543322212 3678999999999999
Q ss_pred hcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccC
Q 048587 88 FSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWE 126 (150)
Q Consensus 88 ~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~ 126 (150)
++.. .++.-.+.||++.|+..|..+|.|+-.+
T Consensus 692 ~~q~-------~rd~~P~hr~ak~linsQ~~nGdfpqq~ 723 (760)
T KOG0497|consen 692 AGQA-------ERDPLPLHRAAKVLINSQLENGDFPQQE 723 (760)
T ss_pred cCCc-------ccccchHHHHHHHHHhcccccCCcchhH
Confidence 8632 1233379999999999999999998764
No 24
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.15 E-value=2.7e-10 Score=93.27 Aligned_cols=115 Identities=18% Similarity=0.165 Sum_probs=78.5
Q ss_pred CCchhHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHHhhccCCCCCCCcccccCCCC---CCccccCCCCCCCCcccchHH
Q 048587 5 GSQTWDCAFAVQALLACNLTDE-IGPILMKAHDFLKTSQVTDNPPGDFESMFRHTS---KGGWTFSNKDHGWPVSDCTAE 80 (150)
Q Consensus 5 ~s~~wdTala~~AL~~aG~~~~-~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~---~GgW~fs~~~~~~pd~d~Ta~ 80 (150)
.+.+|.|++++.+|..+..... ..+.|+|+++||+++|.+| |+|.+..+-+. .|++. ...++++.||+
T Consensus 78 ~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~d---G~f~e~~~~~~~~m~gg~~-----~~~~~~~lTA~ 149 (297)
T cd02896 78 PSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPD---GSFQEPSPVIHREMTGGVE-----GSEGDVSLTAF 149 (297)
T ss_pred CcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCC---CeeCCCCCccChhccCCcc-----ccCCCccchHH
Confidence 6789999999999988754211 2679999999999999986 99986543322 23332 11368899999
Q ss_pred HHHHHHHhcCCCC------------------ccc-CC-C-------------CCHHHHHHHHHHHHhcccCCCCccccCC
Q 048587 81 ALLCCLYFSMLPP------------------EIV-GE-K-------------MEPERYYDAVNCIISMQSQTGGVPAWEP 127 (150)
Q Consensus 81 al~aL~~~~~~~~------------------~~~-g~-~-------------~~~~~i~rav~wL~~~Qn~dGGW~~~~~ 127 (150)
++++|...+...+ +.. .. . ...+...++.++|+++|+.||||+.+..
T Consensus 150 vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~~~~~~Y~~Al~ayALal~~~~~~~~a~~~L~~~~~~d~~~~~~~~ 229 (297)
T cd02896 150 VLIALQEARSICPPEVQNLDQSIRKAISYLENQLPNLQRPYALAITAYALALADSPLSHAANRKLLSLAKRDGNGWYWWT 229 (297)
T ss_pred HHHHHHhhhccccccchhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHcCChhhHHHHHHHHHHhhhCCCcceecc
Confidence 9999998753210 000 00 0 0112346788888899999999986543
No 25
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.03 E-value=2e-10 Score=80.03 Aligned_cols=85 Identities=25% Similarity=0.247 Sum_probs=42.2
Q ss_pred CchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHH
Q 048587 6 SQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCC 85 (150)
Q Consensus 6 s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL 85 (150)
+.+-.|+.++++|...+.. .+.++|+|+++||+++|.+| |+| ++. +...+.+|+.++.+|
T Consensus 24 ~~~~~t~~~~~al~~~~~~-~~~~ai~ka~~~l~~~Q~~d---G~w------------~~~----~~~~~~~t~~~~~~l 83 (109)
T PF13243_consen 24 SDVFVTAALILALAAAGDA-AVDEAIKKAIDWLLSHQNPD---GGW------------GYS----GGEYVSMTAAAIAAL 83 (109)
T ss_dssp -----------------TS--SSBSSHHHHHHHHH---TT---S--------------S-T----S--HHHHHHHHHHHH
T ss_pred ccccccccccccccccCCC-CcHHHHHHHHHHHHHhcCCC---CCC------------CCc----CCCCHHHHHHHHHHH
Confidence 4466788889999888854 45899999999999999986 554 432 123456788887777
Q ss_pred HHhcCCCCcccCCCCCHHHHHHHHHHHHhcccC
Q 048587 86 LYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQ 118 (150)
Q Consensus 86 ~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~ 118 (150)
..... ...+++++|+++||++.|.+
T Consensus 84 ~~~~~--------~~~~~~~~r~~~wi~~~~~~ 108 (109)
T PF13243_consen 84 ALAGV--------YPDDEAVERGLEWILSHQLD 108 (109)
T ss_dssp HHHHT--------T--HHHHHHHHHHHHHH---
T ss_pred HHhCC--------CCCCHHHHHHHHHHHHccCC
Confidence 66542 22789999999999998753
No 26
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=98.96 E-value=4.7e-09 Score=85.38 Aligned_cols=101 Identities=16% Similarity=-0.017 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHHHcCC-CCCc----cHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHH
Q 048587 8 TWDCAFAVQALLACNL-TDEI----GPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEAL 82 (150)
Q Consensus 8 ~wdTala~~AL~~aG~-~~~~----~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al 82 (150)
.+=+-+++..|...+. +++. .+.|+.+++.|++.|..| |+|+.+ +- ....++.-.||+|+
T Consensus 23 ~~p~~~~~~yl~~~~~~~~~~~~~~~~~l~~g~~~~~~~q~~d---Gsf~~w---------~~---~~~~~~~wlTa~v~ 87 (292)
T cd02897 23 FAPNIYVLDYLKATGQLTPEIESKALGFLRTGYQRQLTYKHSD---GSYSAF---------GE---SDKSGSTWLTAFVL 87 (292)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhccCCC---CCeecc---------cC---CCCCcchhhHHHHH
Confidence 3444456666666663 3211 112444555555688886 877532 10 00123445799999
Q ss_pred HHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCC
Q 048587 83 LCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRR 129 (150)
Q Consensus 83 ~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~~~~ 129 (150)
++|..+.. +..+++..|+||++||+++|++||||+++++..
T Consensus 88 ~~L~~a~~------~~~v~~~~i~ra~~wL~~~Q~~dG~f~~~~~~~ 128 (292)
T cd02897 88 KSFAQARP------FIYIDENVLQQALTWLSSHQKSNGCFREVGRVF 128 (292)
T ss_pred HHHHHHhc------cCCCCHHHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 99999863 335778999999999999999999999887643
No 27
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=98.92 E-value=2.1e-09 Score=88.06 Aligned_cols=63 Identities=10% Similarity=0.145 Sum_probs=52.9
Q ss_pred cccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhccChhh
Q 048587 74 VSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRRAPSWLESLNPIE 141 (150)
Q Consensus 74 d~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~~~~~~~~l~~~~~~e 141 (150)
|.+.|...|..|+.+-. +.+.+...+++.||++||+++|+++|||+.|.+.++ .++++|.+.+
T Consensus 42 DN~aT~~e~~fLa~~y~----~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~-~Y~~~ITfND 104 (290)
T TIGR02474 42 DNGATVTEIRYLAQVYQ----QEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKG-GYSDAITYND 104 (290)
T ss_pred cCccHHHHHHHHHHHHH----hcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcC-CcccccccCc
Confidence 55569999999988743 235677899999999999999999999999998887 8999996655
No 28
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=98.79 E-value=3e-08 Score=81.23 Aligned_cols=98 Identities=17% Similarity=0.131 Sum_probs=71.3
Q ss_pred CchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHH
Q 048587 6 SQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCC 85 (150)
Q Consensus 6 s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL 85 (150)
..++.++++..||..+|.+ ...+++++|++.|..+ |+|..+.... ...|... .....++..||+||++|
T Consensus 187 ~~~Y~~Al~ayALal~~~~-----~~~~a~~~L~~~~~~d---~~~~~~~~~~-~~~~~~~--~~~~~~vE~TAYALLal 255 (297)
T cd02896 187 QRPYALAITAYALALADSP-----LSHAANRKLLSLAKRD---GNGWYWWTID-SPYWPVP--GPSAITVETTAYALLAL 255 (297)
T ss_pred CChHHHHHHHHHHHHcCCh-----hhHHHHHHHHHHhhhC---CCcceeccCc-CccCCCC--CCchhhhHHHHHHHHHH
Confidence 4678899999999888853 5789999999999987 6665433221 1122110 11123788999999999
Q ss_pred HHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 048587 86 LYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAW 125 (150)
Q Consensus 86 ~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~ 125 (150)
+..+ ..+...++|+||.+.||.+|||.+.
T Consensus 256 l~~~-----------~~~~a~~iv~WL~~qr~~~Ggf~sT 284 (297)
T cd02896 256 LKLG-----------DIEYANPIARWLTEQRNYGGGFGST 284 (297)
T ss_pred HhcC-----------CchhHHHHHHHHHhcCCCCCCeehH
Confidence 9875 2346788999999999999999863
No 29
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=98.79 E-value=4.7e-08 Score=78.22 Aligned_cols=81 Identities=17% Similarity=0.128 Sum_probs=64.2
Q ss_pred ccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHHHhcCCCCcccCCCCCHHHHH
Q 048587 27 IGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYY 106 (150)
Q Consensus 27 ~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~ 106 (150)
....|++++++|.+.|.+| |+|+ -|+ ....++.-.|+.++++|..+.. .| .++++.|+
T Consensus 47 ~~~~i~~~~~~l~~~Q~~d---Ggf~---------~w~----~~~~~~~~~Ta~~~~~L~~a~~-----~~-~v~~~~i~ 104 (282)
T cd02891 47 ALEYIRKGYQRLLTYQRSD---GSFS---------AWG----NSDSGSTWLTAYVVKFLSQARK-----YI-DVDENVLA 104 (282)
T ss_pred HHHHHHHHHHHHHhhcCCC---CCcc---------ccC----CCCCCchHHHHHHHHHHHHHHH-----cC-CCCHHHHH
Confidence 4688999999999999987 7764 222 1113566689999999998864 23 56789999
Q ss_pred HHHHHHHhcccCCCCccccCCCC
Q 048587 107 DAVNCIISMQSQTGGVPAWEPRR 129 (150)
Q Consensus 107 rav~wL~~~Qn~dGGW~~~~~~~ 129 (150)
||++||++.|++||+|..+.+..
T Consensus 105 ra~~~L~~~q~~~g~~~~~~~~~ 127 (282)
T cd02891 105 RALGWLVPQQKEDGSFRELGPVI 127 (282)
T ss_pred HHHHHHHhccCCCCCcCCCCCcc
Confidence 99999999999999999887544
No 30
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=98.77 E-value=4.5e-08 Score=78.34 Aligned_cols=95 Identities=17% Similarity=0.107 Sum_probs=70.9
Q ss_pred CCchhHHHHHHHHHHHcCC--CCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHH
Q 048587 5 GSQTWDCAFAVQALLACNL--TDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEAL 82 (150)
Q Consensus 5 ~s~~wdTala~~AL~~aG~--~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al 82 (150)
.+.+|.|++++++|.+++. ..+ .+.|.|+++||+++|..+ |+|....+....+. + +...++++.|+.++
T Consensus 76 ~~~~~~Ta~~~~~L~~a~~~~~v~-~~~i~ra~~~L~~~q~~~---g~~~~~~~~~~~~~--~---~~~~~~~~~tA~al 146 (282)
T cd02891 76 SGSTWLTAYVVKFLSQARKYIDVD-ENVLARALGWLVPQQKED---GSFRELGPVIHREM--K---GGVDDSVSLTAYVL 146 (282)
T ss_pred CCchHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhccCCC---CCcCCCCCccCHhh--c---CCcCCCcchHHHHH
Confidence 6799999999999987643 222 688999999999999986 88875444332221 1 22357788999999
Q ss_pred HHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhccc
Q 048587 83 LCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQS 117 (150)
Q Consensus 83 ~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn 117 (150)
.+|...+. ...+.+.++++||.+.+.
T Consensus 147 ~~L~~~g~---------~~~~~~~~a~~~L~~~~~ 172 (282)
T cd02891 147 IALAEAGK---------ACDASIEKALAYLETQLD 172 (282)
T ss_pred HHHHHhcc---------cchHHHHHHHHHHHHhcc
Confidence 99988752 125788999999998765
No 31
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=98.77 E-value=4.9e-08 Score=79.04 Aligned_cols=94 Identities=19% Similarity=0.062 Sum_probs=69.9
Q ss_pred CCchhHHHHHHHHHHHcCCC-CCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHH
Q 048587 5 GSQTWDCAFAVQALLACNLT-DEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALL 83 (150)
Q Consensus 5 ~s~~wdTala~~AL~~aG~~-~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~ 83 (150)
.+.++.|..|+.+|...|.. -+ .....++++||.+.|.++ |+|. .+. .+-+|+--|-.++.
T Consensus 74 ~~~~~~T~~al~~l~llg~~~~~-~~~~~~~~~~l~~~q~~d---Ggf~------------~~~--~~~~d~~~ty~al~ 135 (286)
T cd02890 74 DPHLASTYAAVLSLAILGDDALS-RIDREKIYKFLSSLQNPD---GSFR------------GDL--GGEVDTRFVYCALS 135 (286)
T ss_pred CccHHHHHHHHHHHHHcCccccc-hhhHHHHHHHHHHhcCCC---CCcc------------cCC--CCCchHHHHHHHHH
Confidence 57899999999999999863 11 244678999999999987 6664 111 11234555777888
Q ss_pred HHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 048587 84 CCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAW 125 (150)
Q Consensus 84 aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~ 125 (150)
+|..++. ..++.+++.++||+++|++||||+.-
T Consensus 136 ~l~ll~~---------~~~~~~~~~~~~l~~~Q~~dGGf~~~ 168 (286)
T cd02890 136 ILSLLNI---------LTDIDKEKLIDYILSCQNYDGGFGGV 168 (286)
T ss_pred HHHHhCC---------chhhhHHHHHHHHHHhCCCCCCcCCC
Confidence 8877763 12567899999999999999999863
No 32
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=98.76 E-value=5.2e-08 Score=78.89 Aligned_cols=95 Identities=17% Similarity=0.109 Sum_probs=73.8
Q ss_pred CCchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhc-cCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHH
Q 048587 5 GSQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQ-VTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALL 83 (150)
Q Consensus 5 ~s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q-~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~ 83 (150)
.+.+|-|=+++.+|.-.|..-. ...++|+++||+++| .++ |+|+ ++ +...+++..|..|+.
T Consensus 24 ~~~~~~~y~~l~~l~ll~~~~~-~~~~~~~i~~l~~~q~~~~---Ggf~------------~~--~~~~~~~~~T~~al~ 85 (286)
T cd02890 24 ASRLWLLYWILSSLDLLGEDLD-DENKDEIIDFIYSCQVNED---GGFG------------GG--PGQDPHLASTYAAVL 85 (286)
T ss_pred hhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHhhcCCC---CCCC------------CC--CCCCccHHHHHHHHH
Confidence 5678999999999988887333 678999999999999 775 5553 22 234678889999999
Q ss_pred HHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 048587 84 CCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPA 124 (150)
Q Consensus 84 aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~ 124 (150)
+|..++.. .......+++++||.++|++||||..
T Consensus 86 ~l~llg~~-------~~~~~~~~~~~~~l~~~q~~dGgf~~ 119 (286)
T cd02890 86 SLAILGDD-------ALSRIDREKIYKFLSSLQNPDGSFRG 119 (286)
T ss_pred HHHHcCcc-------ccchhhHHHHHHHHHHhcCCCCCccc
Confidence 99998631 01234467899999999999999965
No 33
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=98.59 E-value=3.6e-07 Score=75.05 Aligned_cols=89 Identities=15% Similarity=0.236 Sum_probs=60.0
Q ss_pred CCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccc-hHHHHHHHHHhcCCCC--cccC---
Q 048587 24 TDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDC-TAEALLCCLYFSMLPP--EIVG--- 97 (150)
Q Consensus 24 ~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~-Ta~al~aL~~~~~~~~--~~~g--- 97 (150)
.+.|.+++.||++||++.|.++ |+|..+++.. +++ .++ .+=.|+ +..+|.+|..+.+... ..+.
T Consensus 62 d~~y~~A~~rgld~LL~aQypn---GGWPQf~p~~--~~Y----~~~-ITfND~am~~vl~lL~~i~~~~~~~~~~~~~~ 131 (290)
T TIGR02474 62 NAKYRDAARKGIEYLLKAQYPN---GGWPQFYPLK--GGY----SDA-ITYNDNAMVNVLTLLDDIANGKDPFDVFPDST 131 (290)
T ss_pred chhHHHHHHHHHHHHHhhhCCC---CCcCcccCCc--CCc----ccc-cccCcHHHHHHHHHHHHHHhccCCcccccHHH
Confidence 4558999999999999999996 9999877654 221 111 222232 6678888876632110 0011
Q ss_pred CCCCHHHHHHHHHHHHhcccCCCCc
Q 048587 98 EKMEPERYYDAVNCIISMQSQTGGV 122 (150)
Q Consensus 98 ~~~~~~~i~rav~wL~~~Qn~dGGW 122 (150)
.....++++||++||++.|-++|||
T Consensus 132 ~~r~~~Ai~Rgid~ILktQ~~~gg~ 156 (290)
T TIGR02474 132 RTRAKTAVTKGIECILKTQVVQNGK 156 (290)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCc
Confidence 1234688999999999999888755
No 34
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=98.57 E-value=3.7e-07 Score=74.44 Aligned_cols=94 Identities=22% Similarity=0.258 Sum_probs=63.2
Q ss_pred CchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHH
Q 048587 6 SQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCC 85 (150)
Q Consensus 6 s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL 85 (150)
+.+..|-.|+..|...+.....++.++++++||++.|.++ |+|.. + ..+.+|+--|=.|+.+|
T Consensus 77 ~~~~~t~~a~~~L~ll~~~~~i~~~~~~~~~~i~~~q~~d---Ggf~~------------~--~~~e~d~~~ty~a~~~l 139 (287)
T cd02894 77 PHILSTLSAIQILALYDLLNKIDENKEKIAKFIKGLQNED---GSFSG------------D--KWGEVDTRFSYCAVLCL 139 (287)
T ss_pred chHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHcCCC---CCeec------------C--CCCCchHHHHHHHHHHH
Confidence 4566777777777654432233556899999999999986 77641 1 11123443366666666
Q ss_pred HHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 048587 86 LYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAW 125 (150)
Q Consensus 86 ~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~ 125 (150)
..++. .....++++++||+++|++||||+.-
T Consensus 140 ~ll~~---------~~~i~~~~~~~~l~~~q~~dGGF~~~ 170 (287)
T cd02894 140 TLLGK---------LDLIDVDKAVDYLLSCYNFDGGFGCR 170 (287)
T ss_pred HHhCC---------cchhhHHHHHHHHHHcCCCCCCcCCC
Confidence 66542 12345799999999999999999863
No 35
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=98.35 E-value=3.8e-06 Score=69.15 Aligned_cols=97 Identities=14% Similarity=0.148 Sum_probs=70.9
Q ss_pred CCchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHH
Q 048587 5 GSQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLC 84 (150)
Q Consensus 5 ~s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~a 84 (150)
.+.+|-|-+++.+|.--|...+ ....++.++||.++|.++ |+|.. + ....+++-.|=.|+..
T Consensus 24 ~~~~~~~y~~l~~l~lL~~~~~-~~~~~~~i~~i~~~q~~~---GgF~~--------~------~~~~~h~~~Ty~A~~~ 85 (299)
T cd02893 24 ASRPWLLYWILHSLELLGEELD-QSYADDVISFLRRCQNPS---GGFGG--------G------PGQLPHLATTYAAVNA 85 (299)
T ss_pred cccHHHHHHHHHHHHHhCCccc-HHHHHHHHHHHHHhcCCC---CCCCC--------C------CCCCccHHHHHHHHHH
Confidence 6789999999999988876322 456789999999999986 77651 1 1124666778888888
Q ss_pred HHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 048587 85 CLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAW 125 (150)
Q Consensus 85 L~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~ 125 (150)
|..++... ....-..++.++||.++|++||||+.-
T Consensus 86 L~ll~~~~------~~~~id~~~~~~~l~~~q~~dGgf~~~ 120 (299)
T cd02893 86 LAIIGTEE------AYDVIDREALYKFLLSLKQPDGSFRMH 120 (299)
T ss_pred HHHhCCch------hhhHhhHHHHHHHHHHhcCCCCCeeCC
Confidence 88876210 012223355899999999999999875
No 36
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=98.28 E-value=6.5e-06 Score=67.79 Aligned_cols=93 Identities=19% Similarity=0.160 Sum_probs=61.1
Q ss_pred CCchhHHHHHHHHHHHcCCCCCccHHH--HHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHH
Q 048587 5 GSQTWDCAFAVQALLACNLTDEIGPIL--MKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEAL 82 (150)
Q Consensus 5 ~s~~wdTala~~AL~~aG~~~~~~~~i--~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al 82 (150)
.+++.-|=.|+..|...|..+. .+.| .++++||.+.|.+| |+|.. . ..+-+|+--|=.|+
T Consensus 73 ~~h~~~Ty~A~~~L~ll~~~~~-~~~id~~~~~~~l~~~q~~d---Ggf~~------------~--~~~e~D~r~tycav 134 (299)
T cd02893 73 LPHLATTYAAVNALAIIGTEEA-YDVIDREALYKFLLSLKQPD---GSFRM------------H--VGGEVDVRGTYCAI 134 (299)
T ss_pred CccHHHHHHHHHHHHHhCCchh-hhHhhHHHHHHHHHHhcCCC---CCeeC------------C--CCCCchHhHHHHHH
Confidence 4678889899999888875321 2233 45999999999986 66642 1 11122222233344
Q ss_pred HHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 048587 83 LCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPA 124 (150)
Q Consensus 83 ~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~ 124 (150)
..+..++. ..++.+++.++||+++|+.|||++.
T Consensus 135 a~~~lL~~---------~~~~~~~~~~~~l~~cQ~~dGGF~~ 167 (299)
T cd02893 135 SVASLLNI---------LTDELFEGVAEYILSCQTYEGGFGG 167 (299)
T ss_pred HHHHHhCC---------CchhhHHHHHHHHHHcCCCCCCcCC
Confidence 33433431 2346689999999999999999985
No 37
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=98.28 E-value=5e-07 Score=79.17 Aligned_cols=98 Identities=22% Similarity=0.149 Sum_probs=75.5
Q ss_pred CCCchhHHHHHHHHHHHcCCCCC-c-cHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHH
Q 048587 4 FGSQTWDCAFAVQALLACNLTDE-I-GPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEA 81 (150)
Q Consensus 4 ~~s~~wdTala~~AL~~aG~~~~-~-~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~a 81 (150)
.+|-+++|+-++.+|.+...-.+ + ...|++|++||++.|.++ |.|. |.|+-.+.+ .|..+
T Consensus 325 ~~s~adct~~~~~~l~a~~~yl~~~~~~~i~~a~e~LL~~Q~~~---GsW~--------g~w~v~~iY-------~~s~a 386 (517)
T COG1657 325 DPSTADCTHRVVLALAALNAYLEAYDGQPIERALEWLLSDQEPD---GSWY--------GRWGVCYIY-------GTSGA 386 (517)
T ss_pred cCCcccCCCccHHHHhhhhhccccccCCcccHHHhhhhhhcccc---Ccee--------eEEEEEEEE-------ehhhh
Confidence 36778888888888877643222 2 466999999999999997 9997 788765543 48888
Q ss_pred HHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccC
Q 048587 82 LLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWE 126 (150)
Q Consensus 82 l~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~ 126 (150)
+.+|..++... -+...+++++.||.+.|++||||+...
T Consensus 387 ~~~l~~~g~~~-------~~~~~v~~~~~~l~~~~~~~~Gw~e~~ 424 (517)
T COG1657 387 LSALALVGETD-------ENEVLVRKLISWLVSKQMPDGGWGEAK 424 (517)
T ss_pred hhhhhccCccc-------cchHHHHHHHHHhhhccccCCCccccc
Confidence 88887765321 245689999999999999999998653
No 38
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=98.26 E-value=5.5e-06 Score=67.57 Aligned_cols=90 Identities=18% Similarity=0.007 Sum_probs=61.5
Q ss_pred CchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHH
Q 048587 6 SQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCC 85 (150)
Q Consensus 6 s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL 85 (150)
+++.-|=.|+.+|.-.+... ...++++++||+++|..| |+|.. . ..+-+|+--|.+|+.+|
T Consensus 127 ~d~~~ty~a~~~l~ll~~~~--~i~~~~~~~~l~~~q~~d---GGF~~------------~--~~~es~~~~t~cavasL 187 (287)
T cd02894 127 VDTRFSYCAVLCLTLLGKLD--LIDVDKAVDYLLSCYNFD---GGFGC------------R--PGAESHAGQIFCCVGAL 187 (287)
T ss_pred chHHHHHHHHHHHHHhCCcc--hhhHHHHHHHHHHcCCCC---CCcCC------------C--CCCCCchhHHHHHHHHH
Confidence 34444545555554445332 345899999999999986 77642 1 11234555589999999
Q ss_pred HHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCcc
Q 048587 86 LYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVP 123 (150)
Q Consensus 86 ~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~ 123 (150)
..++.. +...+++.++||+++|+.+||+.
T Consensus 188 ~llg~~---------~~~~~~~~~~~L~~~q~~~GGf~ 216 (287)
T cd02894 188 AILGSL---------DLIDRDRLGWWLCERQLPSGGLN 216 (287)
T ss_pred HHcCcc---------cccCHHHHHHHHHHhCCCCCCcC
Confidence 888642 22348899999999999999996
No 39
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=98.25 E-value=1.8e-06 Score=69.01 Aligned_cols=98 Identities=23% Similarity=0.183 Sum_probs=68.3
Q ss_pred CCchhHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHHhhccCCCCCCCcccccC--CCC-CCccccCCCCCCCCcccchHH
Q 048587 5 GSQTWDCAFAVQALLACNLTDE-IGPILMKAHDFLKTSQVTDNPPGDFESMFR--HTS-KGGWTFSNKDHGWPVSDCTAE 80 (150)
Q Consensus 5 ~s~~wdTala~~AL~~aG~~~~-~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~--~~~-~GgW~fs~~~~~~pd~d~Ta~ 80 (150)
.+.+|-|||++..|..+..--. -...|.++++||+++|.+| |.|.+..+ +.. .|+. ..++..||.
T Consensus 24 ~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~d---G~F~e~~~~~~~~~~g~~--------~~~~~lTA~ 92 (246)
T PF07678_consen 24 PSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPD---GSFEEDGPVIHREMQGGV--------EDDIALTAY 92 (246)
T ss_dssp SBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETT---SEB--SSS-SSGGGSGGG--------THHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCC---CccccCCCccccccCCCC--------CCCeeehHH
Confidence 6889999999999998854321 1678999999999999987 88864311 111 1221 246778999
Q ss_pred HHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhc
Q 048587 81 ALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISM 115 (150)
Q Consensus 81 al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~ 115 (150)
++.||+..+.... ...+.....++||++||...
T Consensus 93 VliAL~e~~~~~~--~~~~~~~~~i~kA~~~L~~~ 125 (246)
T PF07678_consen 93 VLIALLEAGSLCD--SEKPEYENAINKALNYLERH 125 (246)
T ss_dssp HHHHHHHCHCCHT--TTHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhcc--ccchhhHHHHHHHHHHHHHh
Confidence 9999999863211 01234578899999999765
No 40
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=98.14 E-value=1.4e-05 Score=66.29 Aligned_cols=92 Identities=22% Similarity=0.180 Sum_probs=57.5
Q ss_pred CchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHH
Q 048587 6 SQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCC 85 (150)
Q Consensus 6 s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL 85 (150)
+++=-|-.|+.+|...+.-. .-...++++||.+.|.+| |+|.. ...+-.|+--|=.|+.+|
T Consensus 83 ~h~~~Ty~al~~L~ll~~~~--~id~~~~~~~l~s~Q~~d---GgF~~--------------~~~ge~D~r~ty~a~a~l 143 (316)
T PLN03201 83 PHILYTLSAVQILALFDRLD--LLDADKVASYVAGLQNED---GSFSG--------------DEWGEIDTRFSYCALCCL 143 (316)
T ss_pred ccHHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHhcCCC---CCccC--------------CCCCCccHHHHHHHHHHH
Confidence 34555766777766543221 223567999999999986 77651 011112222255555555
Q ss_pred HHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 048587 86 LYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAW 125 (150)
Q Consensus 86 ~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~ 125 (150)
..++. .....++++++||+++|+.||||+.-
T Consensus 144 ~LL~~---------~~~i~~~~~~~~i~scq~~dGGF~~~ 174 (316)
T PLN03201 144 SLLKR---------LDKINVEKAVDYIVSCKNFDGGFGCT 174 (316)
T ss_pred HHhCc---------cchhHHHHHHHHHHHhcCCCCCcCCC
Confidence 55542 12345799999999999999999864
No 41
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=98.07 E-value=2.4e-05 Score=64.96 Aligned_cols=89 Identities=13% Similarity=0.074 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHHH
Q 048587 8 TWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLY 87 (150)
Q Consensus 8 ~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~ 87 (150)
+|.+=+++.+|.--|... ....+++++||+++|.++ |+|... + ...|..-.|-.|+.+|..
T Consensus 37 ~~~~y~~l~~L~lL~~~~--~~~~~~~i~~l~~cq~~~---GGF~~~-----~---------~~~~h~~~Ty~al~~L~l 97 (316)
T PLN03201 37 MNGAYWGLTALDLLGKLD--DVDRDEVVSWVMRCQHES---GGFGGN-----T---------GHDPHILYTLSAVQILAL 97 (316)
T ss_pred HHHHHHHHHHHHHhCCCc--cccHHHHHHHHHHhcCCC---CCcCCC-----C---------CCcccHHHHHHHHHHHHH
Confidence 335644555554444432 234689999999999986 777511 1 112556678888888887
Q ss_pred hcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 048587 88 FSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPA 124 (150)
Q Consensus 88 ~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~ 124 (150)
+.. ...-..++.++||.++|++||||..
T Consensus 98 l~~---------~~~id~~~~~~~l~s~Q~~dGgF~~ 125 (316)
T PLN03201 98 FDR---------LDLLDADKVASYVAGLQNEDGSFSG 125 (316)
T ss_pred hhh---------hhhhhHHHHHHHHHHhcCCCCCccC
Confidence 742 1222356799999999999999985
No 42
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=98.04 E-value=3.3e-05 Score=63.91 Aligned_cols=99 Identities=21% Similarity=0.110 Sum_probs=66.8
Q ss_pred CCchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHH
Q 048587 5 GSQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLC 84 (150)
Q Consensus 5 ~s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~a 84 (150)
.++++.|=+|+.+|.-.|.+.+ .-...+.++||++.|..| |+|+. ... ...+.+|+--|=.|+.+
T Consensus 89 ~~~l~~ty~Al~~L~lL~~~~~-~idr~~i~~~l~~~q~~d---GgF~~--------~~~---~~~~e~d~r~ty~Av~~ 153 (307)
T cd02895 89 TGNLAMTYFALLSLLILGDDLS-RVDRKAILNFLSKLQLPD---GSFGS--------VLD---SEGGENDMRFCYCAVAI 153 (307)
T ss_pred cccHHHHHHHHHHHHHhCCchh-hhhHHHHHHHHHHhCCCC---CCccC--------CcC---CcCCCccHHHHHHHHHH
Confidence 5788999999988887764322 224578999999999986 77752 110 01123445556677777
Q ss_pred HHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 048587 85 CLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAW 125 (150)
Q Consensus 85 L~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~ 125 (150)
|..++... ......++.++||+++|+.||||+..
T Consensus 154 l~lL~~~~-------~~~~d~~~li~~l~s~Q~~dGGF~~~ 187 (307)
T cd02895 154 CYMLDDWS-------EEDIDKEKLIDYIKSSQSYDGGFGQG 187 (307)
T ss_pred HHHhCCCc-------cccccHHHHHHHHHHccCCCCCccCC
Confidence 77665211 01224688999999999999999854
No 43
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=97.90 E-value=0.00011 Score=60.68 Aligned_cols=106 Identities=15% Similarity=0.035 Sum_probs=70.0
Q ss_pred CCchhHHHHHHHHHHHcCCCC--CccHHHHHHHHHHHhhc----cCCCCCCCcccccCCCCCCccccCCCCCCCCcccch
Q 048587 5 GSQTWDCAFAVQALLACNLTD--EIGPILMKAHDFLKTSQ----VTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCT 78 (150)
Q Consensus 5 ~s~~wdTala~~AL~~aG~~~--~~~~~i~ra~~wL~~~Q----~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~T 78 (150)
.+.+|-|=+++.+|.--|... + ...-++.++||.++| .++ |+|.....+..++ .......+++-.|
T Consensus 24 ~~r~~~~yf~l~~L~lL~~~~~~~-~~~r~~~i~~i~~~q~~~~~~~---GgF~~~~~~~~~~----~~~~~~~~~l~~t 95 (307)
T cd02895 24 TNRLTIAFFALSGLDLLGALDSIL-VEEKDDIIEWIYSLQVLSNLPR---GGFRGSSTLGLPG----TASKYDTGNLAMT 95 (307)
T ss_pred hhhHHHHHHHHHHHHHhCCCcccc-HHHHHHHHHHHHHHhcccCCCC---CCCCCCCCCcccc----ccccCCcccHHHH
Confidence 567889999999988877643 2 344577899999999 654 7775321110000 0011124666678
Q ss_pred HHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccC
Q 048587 79 AEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWE 126 (150)
Q Consensus 79 a~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~ 126 (150)
=+|+.+|..++. +...-..++.++||+++|++||||+...
T Consensus 96 y~Al~~L~lL~~--------~~~~idr~~i~~~l~~~q~~dGgF~~~~ 135 (307)
T cd02895 96 YFALLSLLILGD--------DLSRVDRKAILNFLSKLQLPDGSFGSVL 135 (307)
T ss_pred HHHHHHHHHhCC--------chhhhhHHHHHHHHHHhCCCCCCccCCc
Confidence 888888888763 1112234678999999999999998653
No 44
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=97.81 E-value=0.00013 Score=58.22 Aligned_cols=102 Identities=21% Similarity=0.128 Sum_probs=68.5
Q ss_pred CCchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHH
Q 048587 5 GSQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLC 84 (150)
Q Consensus 5 ~s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~a 84 (150)
....+..|++..||..+|. ++...++++-|.+....++..-.|....... ...+.+.. ..-.++-.|+.||++
T Consensus 129 ~~~~Y~lAl~aYAL~la~~----~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~-~~~~~~~~--~~s~~vEtTaYaLLa 201 (246)
T PF07678_consen 129 IQDPYTLALVAYALALAGD----SPQASKLLNKLNSMATTEGGLRYWSSDESSS-SSSSPWSR--GSSLDVETTAYALLA 201 (246)
T ss_dssp TSSHHHHHHHHHHHHHTTT----CHHHHHHHHHHHCHCEETTTTCEE-SSSSSS-SSSSTTT---SHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhcc----cchHHHHHHHHHHhhhhccccCcccCCcccc-cccccccc--cchHHHHHHHHHHHH
Confidence 3456778889999999883 4677888888988887762111232211111 11111110 112467789999999
Q ss_pred HHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 048587 85 CLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPA 124 (150)
Q Consensus 85 L~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~ 124 (150)
++... ..+...+.++||.+.||.+|||++
T Consensus 202 ~l~~~-----------~~~~~~~iv~WL~~qr~~~Ggf~S 230 (246)
T PF07678_consen 202 LLKRG-----------DLEEASPIVRWLISQRNSGGGFGS 230 (246)
T ss_dssp HHHHT-----------CHHHHHHHHHHHHHCTTTTSSTSS
T ss_pred HHhcc-----------cHHHHHHHHHHHHHhcCCCCccCc
Confidence 99874 567788999999999999999986
No 45
>PLN02710 farnesyltranstransferase subunit beta
Probab=97.80 E-value=0.00018 Score=62.42 Aligned_cols=95 Identities=18% Similarity=0.119 Sum_probs=62.3
Q ss_pred CCchhHHHHHHHHHHHcCCCCCc-cHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHH
Q 048587 5 GSQTWDCAFAVQALLACNLTDEI-GPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALL 83 (150)
Q Consensus 5 ~s~~wdTala~~AL~~aG~~~~~-~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~ 83 (150)
.+++--|=.|+.+|.-.|..+.+ .-...+.++||++.|.++ |+|... ..+-+|+.-|=.|+.
T Consensus 118 ~~hl~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~q~~d---GgF~~~--------------~~gE~D~R~tYcAla 180 (439)
T PLN02710 118 LPHLATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPS---GGFRMH--------------DGGEMDVRACYTAIS 180 (439)
T ss_pred CccHHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHcCCCC---CCcccC--------------CCCCCCcCCcHHHHH
Confidence 35667777888888777743211 112467899999999986 876521 112234444555555
Q ss_pred HHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 048587 84 CCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAW 125 (150)
Q Consensus 84 aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~ 125 (150)
.|..++. ....-+++.++||+++|+.|||++.-
T Consensus 181 il~LL~~---------l~~~~~e~~~~~I~scQ~~dGGF~g~ 213 (439)
T PLN02710 181 VASLLNI---------LDDELVKGVGDYILSCQTYEGGIGGE 213 (439)
T ss_pred HHHHhCc---------CchhhHHHHHHHHHHhCCCCCCCCCC
Confidence 5555542 23456789999999999999999854
No 46
>PLN02710 farnesyltranstransferase subunit beta
Probab=97.80 E-value=0.00015 Score=62.93 Aligned_cols=97 Identities=15% Similarity=0.280 Sum_probs=68.1
Q ss_pred CCchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHH
Q 048587 5 GSQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLC 84 (150)
Q Consensus 5 ~s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~a 84 (150)
-+.+|-|=+++.+|.--|.+-+ ...-++.++||.+.|.++ |+|+ |+ ....|+.-.|=.|+.+
T Consensus 69 a~r~~~~Yw~L~sL~lLg~~l~-~~~~~~ii~~l~~cQ~~d---GGFg--------g~------pg~~~hl~~TY~Av~~ 130 (439)
T PLN02710 69 ANRPWLCYWILHSIALLGESLD-DELENDTIDFLSRCQDPN---GGYG--------GG------PGQLPHLATTYAAVNT 130 (439)
T ss_pred hhhHHHHHHHHHHHHHhCCccc-HHHHHHHHHHHHHhcCCC---cCCC--------CC------CCCCccHHHHHHHHHH
Confidence 4678999999999887776322 345678999999999986 7765 11 1113566678888888
Q ss_pred HHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 048587 85 CLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAW 125 (150)
Q Consensus 85 L~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~ 125 (150)
|..++.... . ..++ .++.++||+++|++||||+.-
T Consensus 131 L~iLg~~~~-l--~~Id---r~~l~~fl~s~q~~dGgF~~~ 165 (439)
T PLN02710 131 LVTIGGERA-L--SSIN---REKLYTFLLRMKDPSGGFRMH 165 (439)
T ss_pred HHHcCCchh-h--cccC---HHHHHHHHHHcCCCCCCcccC
Confidence 888763100 0 0122 356799999999999999853
No 47
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=97.65 E-value=5.5e-05 Score=62.24 Aligned_cols=59 Identities=15% Similarity=0.271 Sum_probs=41.7
Q ss_pred cccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhcc
Q 048587 74 VSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRRAPSWLESL 137 (150)
Q Consensus 74 d~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~~~~~~~~l~~~ 137 (150)
|.+.|...|..|+.+.. ..+.+..++++.||++||++.|-++|||+-|=+.+.. +-.+|
T Consensus 37 DN~aT~~ei~fLa~~y~----~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~-Y~~~I 95 (289)
T PF09492_consen 37 DNDATTTEIRFLARVYQ----ATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGG-YHDHI 95 (289)
T ss_dssp GGGTTHHHHHHHHHHHH----HCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SG-GGGSE
T ss_pred cChhHHHHHHHHHHHHH----HhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCC-CCCce
Confidence 66679999999988753 2345567899999999999999999999988666444 55555
No 48
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=97.51 E-value=0.00013 Score=60.16 Aligned_cols=105 Identities=15% Similarity=0.227 Sum_probs=56.6
Q ss_pred HHHHHHHHHHc---CCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCccc-chHHHHHHHH
Q 048587 11 CAFAVQALLAC---NLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSD-CTAEALLCCL 86 (150)
Q Consensus 11 Tala~~AL~~a---G~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d-~Ta~al~aL~ 86 (150)
|.-.+.-|+.+ -.++.|++++.|+++||++.|.++ |+|...|+.. ++ |+. + ..=.| ....+|..|.
T Consensus 41 T~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypn---GGWPQ~yP~~--~~--Y~~--~-ITfNDdam~~vl~lL~ 110 (289)
T PF09492_consen 41 TTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPN---GGWPQFYPLR--GG--YHD--H-ITFNDDAMVNVLELLR 110 (289)
T ss_dssp THHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TT---S--BSECS----SG--GGG--S-EE-GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCC---CCCCccCCCC--CC--CCC--c-eEEccHHHHHHHHHHH
Confidence 34444444433 123458999999999999999995 9998777763 22 211 1 11223 3566777777
Q ss_pred HhcCCCCc--ccCC---CCCHHHHHHHHHHHHhcccC----CCCcccc
Q 048587 87 YFSMLPPE--IVGE---KMEPERYYDAVNCIISMQSQ----TGGVPAW 125 (150)
Q Consensus 87 ~~~~~~~~--~~g~---~~~~~~i~rav~wL~~~Qn~----dGGW~~~ 125 (150)
.+.+.... .+.. ....+++.||+++|+..|-. --+|+..
T Consensus 111 ~v~~~~~~~~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQ 158 (289)
T PF09492_consen 111 DVAEGKGDFAFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQ 158 (289)
T ss_dssp HHHCT-TTSTTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SE
T ss_pred HHHhhcCCccccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhc
Confidence 66542210 0000 03467899999999999983 3678765
No 49
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0012 Score=53.89 Aligned_cols=92 Identities=21% Similarity=0.224 Sum_probs=61.4
Q ss_pred CCchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccc--hHHHH
Q 048587 5 GSQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDC--TAEAL 82 (150)
Q Consensus 5 ~s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~--Ta~al 82 (150)
.+++=-|=-|+|-|+-...-+. --..+-..|+.+.|++| |++.- ..|+ .+|. +-.|+
T Consensus 92 d~hll~TlsAvQiL~~ydsi~~--~d~d~v~~yi~gLq~ed---GsF~g-------D~wG---------EvDTRfs~~av 150 (329)
T KOG0366|consen 92 DPHLLYTLSAVQILALYDSINV--LDRDKVASYIKGLQQED---GSFSG-------DIWG---------EVDTRFSYCAV 150 (329)
T ss_pred ChHHHHHHHHHHHHHHHccccc--ccHHHHHHHHHhhcCcC---CcccC-------Cccc---------ccchhhhHHHH
Confidence 4666677778887776542111 12455679999999997 77641 2343 2222 44455
Q ss_pred HHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccC
Q 048587 83 LCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWE 126 (150)
Q Consensus 83 ~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~ 126 (150)
.+|..++. ++.-.+++||+|++++-|-||||+.-.
T Consensus 151 ~~L~lLg~---------ld~~nve~aVd~~~~CyN~DGGFG~~p 185 (329)
T KOG0366|consen 151 ACLALLGK---------LDTINVEKAVDFVLSCYNFDGGFGCRP 185 (329)
T ss_pred HHHHHHhh---------HHHhhHHHHHHHHHhhcccCCCcCCCC
Confidence 55555553 356778999999999999999999753
No 50
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=97.35 E-value=0.00017 Score=42.78 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=20.0
Q ss_pred HHHHHHHHHhcccCCCCccccC
Q 048587 105 YYDAVNCIISMQSQTGGVPAWE 126 (150)
Q Consensus 105 i~rav~wL~~~Qn~dGGW~~~~ 126 (150)
++++++||+++|++||||+...
T Consensus 3 ~~~~~~~l~~~Q~~dGGf~~~~ 24 (44)
T PF00432_consen 3 VEKLIRFLLSCQNPDGGFGGRP 24 (44)
T ss_dssp HHHHHHHHHHTBBTTSSBBSST
T ss_pred HHHHHHHHHHHCCCCCCCCCCC
Confidence 6899999999999999999764
No 51
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0019 Score=53.72 Aligned_cols=95 Identities=20% Similarity=0.245 Sum_probs=60.9
Q ss_pred CCchhHHHHHHHHHHHcCCCCCccHHHH--HHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHH
Q 048587 5 GSQTWDCAFAVQALLACNLTDEIGPILM--KAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEAL 82 (150)
Q Consensus 5 ~s~~wdTala~~AL~~aG~~~~~~~~i~--ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al 82 (150)
.+++=.|=+|++.|+..+... .-..++ +-.+||.+.|.+| |++. .+ .| +-.|.+. +.
T Consensus 101 ~~hL~sT~~Ai~~L~~~d~~~-~~~~idr~~l~~fi~~lk~pd---GsF~----~~---~~-------gevDtr~---~Y 159 (342)
T COG5029 101 DSHLASTVFAIQSLAMLDSLD-VLSRIDRDSLASFISGLKNPD---GSFR----SD---LE-------GEVDTRF---LY 159 (342)
T ss_pred chhHHHHHHHHHHHHHhcccc-ccchhhHHHHHHHHHhccCCC---Ccee----cc---cC-------CcchHHH---HH
Confidence 466778889999998876332 123334 5889999999997 7753 11 11 1123333 33
Q ss_pred HHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccC
Q 048587 83 LCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWE 126 (150)
Q Consensus 83 ~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~ 126 (150)
.||..+. ..| ..+.+-.+-+|+||+++||=|||++...
T Consensus 160 ~al~ils-----llg-~~~~~~~e~~vdyl~kCqnyeGGFg~~p 197 (342)
T COG5029 160 IALSILS-----LLG-DLDKELFEGAVDYLKKCQNYEGGFGLCP 197 (342)
T ss_pred HHHHHHH-----HHh-hcchhhhHHHHHHHHHhhccCCcccCCC
Confidence 3332221 011 2466778889999999999999999764
No 52
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0036 Score=52.84 Aligned_cols=117 Identities=21% Similarity=0.243 Sum_probs=77.8
Q ss_pred CCchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHH
Q 048587 5 GSQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLC 84 (150)
Q Consensus 5 ~s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~a 84 (150)
-|..|-.=+.+.+|.--+..-+ +..+.++++||...|.++ |+|+ || +.-+|-.--|=.|+.+
T Consensus 97 ASR~Wm~YWil~sl~lL~~~~d-d~v~~~~i~fL~~c~~Pe---GGfg--------GG------PGQl~HLA~TYAAVna 158 (423)
T KOG0365|consen 97 ASRPWMCYWILNSLALLDEWLD-DDVKENAIDFLFTCQGPE---GGFG--------GG------PGQLPHLAPTYAAVNA 158 (423)
T ss_pred cCcchhHHHHHHHHHHhcCcCC-HHHHHHHHHHHHhcCCCC---CCCC--------CC------CccchhhhHHHHHHHH
Confidence 4778888888888877776545 789999999999999987 7765 33 1113444458899999
Q ss_pred HHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccC-----------CCCcchhhhccChhhhhhhh
Q 048587 85 CLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWE-----------PRRAPSWLESLNPIEFFDEV 146 (150)
Q Consensus 85 L~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~-----------~~~~~~~l~~~~~~e~f~~~ 146 (150)
|..++... +=..+++ ++-.+||.++-++||||..-+ .-.-.+.||++-+ |.|..+
T Consensus 159 L~~~~~e~---A~~~InR---~~l~~fL~slK~~dGgFrmh~~GE~DvRs~YcA~svasllni~~d-eL~eG~ 224 (423)
T KOG0365|consen 159 LCLCGSED---AYSSINR---EKLYQFLFSLKDPDGGFRMHVEGEVDVRSAYCALSVASLLNIPMD-ELFEGT 224 (423)
T ss_pred HHhcCcHH---HHHHhhH---HHHHHHHHHhcCCCCCeEeecCCcchHHHHHHHHHHHHHHCCCcH-HHHHHH
Confidence 99887311 0001111 235899999999999995432 2223455665544 666543
No 53
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=97.15 E-value=0.0011 Score=39.21 Aligned_cols=41 Identities=29% Similarity=0.250 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHHHh
Q 048587 31 LMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYF 88 (150)
Q Consensus 31 i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~ 88 (150)
++++++||+++|.++ |+|+ +. ....||+--|-+++.+|..+
T Consensus 3 ~~~~~~~l~~~Q~~d---GGf~--------~~------~~~~~d~~~t~~~~~~L~ll 43 (44)
T PF00432_consen 3 VEKLIRFLLSCQNPD---GGFG--------GR------PGGESDTCYTYCALAALSLL 43 (44)
T ss_dssp HHHHHHHHHHTBBTT---SSBB--------SS------TTSSBBHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCC---CCCC--------CC------CCCCCChHHHHHHHHHHHHc
Confidence 689999999999986 7775 21 22257777899999888765
No 54
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.98 E-value=0.0055 Score=48.91 Aligned_cols=100 Identities=17% Similarity=0.032 Sum_probs=65.7
Q ss_pred chhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCC-------------------------C--C
Q 048587 7 QTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRH-------------------------T--S 59 (150)
Q Consensus 7 ~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~-------------------------~--~ 59 (150)
++=+|=++..+|...+.... ...-+|+++-|..+..-+++++..++ | .
T Consensus 122 ~Le~ty~~~~~l~~~n~~~~-----eE~k~~v~~~~re~~~g~~YGv~~pnt~~t~~aly~l~~k~~~~~v~~Fe~~c~~ 196 (274)
T COG1689 122 PLEATYWMMSALNMVNYEYL-----EEMKEKVIEFVREFGIGDAYGVTHPNTTMTYQALYTLGSKGPKEEVRHFELCCGD 196 (274)
T ss_pred hHHHHHHHHHHHHHhCcCch-----HHHHHHHHHHhhhhccccccccCCcchHHHHHHHHhhccccchHHHHhHHhcccc
Confidence 36677778888888776542 33445566655554211223321111 1 2
Q ss_pred CCccccCCCCCCCCcccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCcc
Q 048587 60 KGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVP 123 (150)
Q Consensus 60 ~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~ 123 (150)
.|||.+. ++..+|=...|-.|+..|..++. +-.+.+.+.||.+.||+||||.
T Consensus 197 ~Ggf~~~-P~syPPYiE~t~ya~r~lelL~~-----------k~~i~~~~rFI~slqN~nGGFR 248 (274)
T COG1689 197 WGGFTEV-PNSYPPYIEPTFYALRGLELLGG-----------KYCISDHIRFIRSLQNQNGGFR 248 (274)
T ss_pred CCCcccC-CCCCCCccchHHHHHhHHHHHcc-----------CcCchHHHHHHHHhhcCCCCee
Confidence 4788764 34556788999999999988873 2346788999999999999994
No 55
>PLN02592 ent-copalyl diphosphate synthase
Probab=96.61 E-value=0.004 Score=57.70 Aligned_cols=81 Identities=16% Similarity=0.226 Sum_probs=53.5
Q ss_pred CchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHH
Q 048587 6 SQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCC 85 (150)
Q Consensus 6 s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL 85 (150)
..++|||++ ||+-.-.... .|.--.+++||+..|.+| |+|+.. +. |... -..-.|..|++||
T Consensus 95 ~S~YDTAWV--AmVp~~~g~~-~p~FP~~~~wIl~nQ~~D---GsWG~~------~~--~~~~----D~ll~TLAcvlAL 156 (800)
T PLN02592 95 ISAYDTAWV--ALVEDINGSG-TPQFPSSLQWIANNQLSD---GSWGDA------YL--FSAH----DRLINTLACVVAL 156 (800)
T ss_pred CcHHHhHHH--hhcccCCCCC-CCCCHHHHHHHHHccCCC---CCCCCC------CC--cchH----HHHHhHHHHHHHH
Confidence 457999994 4443311112 456678999999999997 887621 00 1111 1234599999998
Q ss_pred HHhcCCCCcccCCCCCHHHHHHHHHHHHh
Q 048587 86 LYFSMLPPEIVGEKMEPERYYDAVNCIIS 114 (150)
Q Consensus 86 ~~~~~~~~~~~g~~~~~~~i~rav~wL~~ 114 (150)
..-. +.+..|+||+.||.+
T Consensus 157 ~~w~----------~~~~~i~rGl~fi~~ 175 (800)
T PLN02592 157 KSWN----------LHPEKCEKGMSFFRE 175 (800)
T ss_pred HHhh----------ccHHHHHHHHHHHHH
Confidence 7743 356889999999986
No 56
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.027 Score=47.03 Aligned_cols=84 Identities=24% Similarity=0.311 Sum_probs=53.6
Q ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHHHhcC
Q 048587 11 CAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSM 90 (150)
Q Consensus 11 Tala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~ 90 (150)
+|+++.+|+. -++ .+....+++||.++|+-| |+|+.- |+ .-...+ -|-.||.+|..+..
T Consensus 160 ~al~ilsllg-~~~---~~~~e~~vdyl~kCqnye---GGFg~~-----p~----aEaHag-----~tFcalaalalL~~ 218 (342)
T COG5029 160 IALSILSLLG-DLD---KELFEGAVDYLKKCQNYE---GGFGLC-----PY----AEAHAG-----YTFCALAALALLGK 218 (342)
T ss_pred HHHHHHHHHh-hcc---hhhhHHHHHHHHHhhccC---CcccCC-----Cc----hhhccc-----hHHHHHHHHHHHhc
Confidence 4555666654 222 456788999999999987 887521 11 111112 25566666666654
Q ss_pred CCCcccCCCCCHHHHHHHHHHHHhcccCCCCcc
Q 048587 91 LPPEIVGEKMEPERYYDAVNCIISMQSQTGGVP 123 (150)
Q Consensus 91 ~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~ 123 (150)
.. .+++ +++-+.||..+|-+.||+.
T Consensus 219 Ld------~ls~--~E~l~~Wl~~RQ~ssgGl~ 243 (342)
T COG5029 219 LD------KLSD--VEKLIRWLAERQLSSGGLN 243 (342)
T ss_pred cc------ccch--HHHHHHHHHHcccccCCcC
Confidence 22 2333 7888999999999999885
No 57
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.015 Score=48.27 Aligned_cols=72 Identities=26% Similarity=0.360 Sum_probs=48.5
Q ss_pred HHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHHHhcCCCCcccCCCCCHH-HHHHHH
Q 048587 31 LMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPE-RYYDAV 109 (150)
Q Consensus 31 i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~-~i~rav 109 (150)
-.+++.||+++|.=| |+++.. +|+ ..|+. .|-.||..|...+..- .+.+..+ .++|-+
T Consensus 176 ~ek~~~yI~~~q~Yd---gGfg~~-----pg~-----EsHgG----~TfCAlAsL~L~~~l~----~e~l~~~~~~erli 234 (347)
T KOG0367|consen 176 KEKLIGYIRSSQRYD---GGFGQH-----PGG-----ESHGG----ATFCALASLALMGKLI----PEELSNTSKVERLI 234 (347)
T ss_pred HHHHHHHHHHhhccc---cccccC-----CCC-----CCCcc----hhHHHHHHHHHHhhhh----hhhhccccCHHHHH
Confidence 478999999999987 777632 222 22322 3777777776665421 1122333 389999
Q ss_pred HHHHhcccCCCCcc
Q 048587 110 NCIISMQSQTGGVP 123 (150)
Q Consensus 110 ~wL~~~Qn~dGGW~ 123 (150)
.|++.+|-.+||+-
T Consensus 235 rWli~RQ~~sgGfq 248 (347)
T KOG0367|consen 235 RWLIQRQVSSGGFQ 248 (347)
T ss_pred HHHHHHhhccCCcC
Confidence 99999999999985
No 58
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=95.75 E-value=0.02 Score=51.45 Aligned_cols=94 Identities=14% Similarity=0.071 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccc-cCCCCCCccccCCCCCCCCcccchHHHHHHHHH
Q 048587 9 WDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESM-FRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLY 87 (150)
Q Consensus 9 wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~-~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~ 87 (150)
-|++++++||..+|.. +..++.++||.+.|.++ |.|... +.+..+..|.+ ....|.|+..|.++..
T Consensus 298 RD~~~~a~Al~~~G~~----~~a~~~l~~l~~~q~~~---G~~~~~~~~dG~~~~~~~------~~Q~D~~g~~l~al~~ 364 (616)
T TIGR01577 298 RDASYIATALDRAGYH----DRVDRFFRWAMQTQSRD---GSWQQRYYLNGRLAPLQW------GLQIDETGSILWAMDQ 364 (616)
T ss_pred ccHHHHHHHHHHCCCH----HHHHHHHHHHHHhhCcC---CCcceEEecCCCCCCCCC------CccccchhHHHHHHHH
Confidence 3899999999999985 56899999999999986 877443 33322221111 2456779988888744
Q ss_pred hcCCCCcccCCC---CCHHHHHHHHHHHHhcccC
Q 048587 88 FSMLPPEIVGEK---MEPERYYDAVNCIISMQSQ 118 (150)
Q Consensus 88 ~~~~~~~~~g~~---~~~~~i~rav~wL~~~Qn~ 118 (150)
....-. ... ..-+.|+++++|+.....+
T Consensus 365 y~~~t~---d~~~~~~~~~~v~~a~~fl~~~~~~ 395 (616)
T TIGR01577 365 HYRLTN---DRAFLEEIWESVQKAAQYLILFIDP 395 (616)
T ss_pred HHHHHC---CHHHHHHHHHHHHHHHHHHHHhccC
Confidence 321000 000 1126789999999996643
No 59
>PLN02279 ent-kaur-16-ene synthase
Probab=95.67 E-value=0.02 Score=53.07 Aligned_cols=83 Identities=14% Similarity=0.232 Sum_probs=51.2
Q ss_pred CchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHH
Q 048587 6 SQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCC 85 (150)
Q Consensus 6 s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL 85 (150)
..++|||++.+- ..-.... .|.--.+++||+..|.+| |+|+....+ .|.. .-..-.|..||+||
T Consensus 53 ~s~YDTAWvamv--~~~~~~~-~p~Fp~~~~wil~nQ~~d---GsWg~~~~~------~~~~----~D~ll~TlAcvlAL 116 (784)
T PLN02279 53 VSSYDTAWVAMV--PSPNSQQ-APLFPECVKWLLENQLED---GSWGLPHDH------PLLV----KDALSSTLASILAL 116 (784)
T ss_pred CchhhhHHHHhc--ccCCCCC-CCCChHHHHHHHhcCCCC---CCCCCCCCC------cchh----HHhhHHHHHHHHHH
Confidence 356999998543 3311222 466778999999999997 777521000 0000 11234699999998
Q ss_pred HHhcCCCCcccCCCCCHHHHHHHHHHHHh
Q 048587 86 LYFSMLPPEIVGEKMEPERYYDAVNCIIS 114 (150)
Q Consensus 86 ~~~~~~~~~~~g~~~~~~~i~rav~wL~~ 114 (150)
..=. +.+..+++++.+|.+
T Consensus 117 ~~w~----------~~~~~~~~gl~fi~~ 135 (784)
T PLN02279 117 KKWG----------VGEEQINKGLQFIEL 135 (784)
T ss_pred HHHh----------cCcccchhhHHHHHH
Confidence 7743 234556788877774
No 60
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=95.20 E-value=0.068 Score=48.69 Aligned_cols=87 Identities=20% Similarity=0.172 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccc-cCCCCCCccccCCCCCCCCcccchHHHHHHHHH
Q 048587 9 WDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESM-FRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLY 87 (150)
Q Consensus 9 wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~-~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~ 87 (150)
-|.+++++||..+|.. +..++.++||.+.|..+ |.|... ..+..++ |. -=..|.||..|.++..
T Consensus 298 RD~a~~a~AL~~~G~~----~~a~~~~~~l~~~~~~~---G~~lq~y~vdG~~~-~~-------~iQlD~~g~~i~~~~~ 362 (648)
T TIGR01535 298 RDLYQVANAFLAAGDV----DSALRSLDYLAKVQQDN---GMFPQNSWVDGKPY-WT-------GIQLDETAFPILLAYR 362 (648)
T ss_pred hhHHHHHHHHHHCCCH----HHHHHHHHHHHHHhccC---CCcCceeccCCCCC-CC-------CccccHHHHHHHHHHH
Confidence 4899999999999975 55899999999999986 776422 2232211 21 0357899999998876
Q ss_pred hcCCCCcccCCCCCHHHHHHHHHHHHhc
Q 048587 88 FSMLPPEIVGEKMEPERYYDAVNCIISM 115 (150)
Q Consensus 88 ~~~~~~~~~g~~~~~~~i~rav~wL~~~ 115 (150)
+.+. |.....+.|+++++||...
T Consensus 363 l~~~-----~~~~~~~~vk~aadfl~~~ 385 (648)
T TIGR01535 363 LHRY-----DHAFYDKMLKPAADFIVKN 385 (648)
T ss_pred HHHc-----CcHHHHHHHHHHHHHHHHc
Confidence 6531 2223357799999999985
No 61
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=95.00 E-value=0.16 Score=42.73 Aligned_cols=88 Identities=18% Similarity=0.098 Sum_probs=55.4
Q ss_pred CchhHHHHHHHHHHHc---CCC-CC----ccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccc
Q 048587 6 SQTWDCAFAVQALLAC---NLT-DE----IGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDC 77 (150)
Q Consensus 6 s~~wdTala~~AL~~a---G~~-~~----~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~ 77 (150)
-.|..+|.|++||.-. ... ++ +...|++.++.|+++|.++ |-++ ++--
T Consensus 184 ~sVDT~AmA~LALtCv~~~~~~~~~~~~~i~~~i~~~~~kIl~~q~~~---G~~G---------------------NiyS 239 (326)
T PF01122_consen 184 FSVDTGAMAVLALTCVKNSNPNGPELRRRIQQAIRSLVEKILSQQKPN---GLFG---------------------NIYS 239 (326)
T ss_dssp CHHHHHHHHHHHHHHHHTTTSTTGGGHHHHHHHHHHHHHHHHHTB-TT---S-BS---------------------STTT
T ss_pred CCccHHHHHHHHHHHHhccCcCcHhHHHHHHHHHHHHHHHHHHhcCCC---Cccc---------------------chhh
Confidence 3577889999999654 222 22 3455666777777788775 5532 1114
Q ss_pred hHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 048587 78 TAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPA 124 (150)
Q Consensus 78 Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~ 124 (150)
|+.|+.||......+. ...-...++.++|+.. -++|.|.-
T Consensus 240 TglAmQAL~~~~~~~~------~~~w~C~k~~~~ll~~-i~~G~F~n 279 (326)
T PF01122_consen 240 TGLAMQALSVSPSPPS------ESEWNCQKALDALLKE-ISQGAFQN 279 (326)
T ss_dssp HHHHHHHHTT-SS-SS------HHHHHHHHHHHHHHHH-HTTTTT-S
T ss_pred HHHHHHHHhcCCCCCc------chhhHHHHHHHHHHHH-hhcCCCCC
Confidence 9999999988764221 0135789999999985 46998863
No 62
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.83 E-value=0.28 Score=40.36 Aligned_cols=66 Identities=17% Similarity=0.131 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHH
Q 048587 31 LMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVN 110 (150)
Q Consensus 31 i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~ 110 (150)
-.+-+.|++++|..+ |+++. . ..+-|-.--|-.|+.-|......+ .--.++-+.
T Consensus 68 ~eeiv~~v~~C~~~~---GGfa~--------~------~Ghd~hll~TlsAvQiL~~ydsi~---------~~d~d~v~~ 121 (329)
T KOG0366|consen 68 REEIVSFVLSCQHED---GGFAG--------C------PGHDPHLLYTLSAVQILALYDSIN---------VLDRDKVAS 121 (329)
T ss_pred HHHHHHHHHheecCC---CCcCC--------C------CCCChHHHHHHHHHHHHHHHcccc---------cccHHHHHH
Confidence 456789999999965 77651 1 111244556777888777765321 112344589
Q ss_pred HHHhcccCCCCc
Q 048587 111 CIISMQSQTGGV 122 (150)
Q Consensus 111 wL~~~Qn~dGGW 122 (150)
|+.+.||+||++
T Consensus 122 yi~gLq~edGsF 133 (329)
T KOG0366|consen 122 YIKGLQQEDGSF 133 (329)
T ss_pred HHHhhcCcCCcc
Confidence 999999999975
No 63
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=93.17 E-value=0.23 Score=41.30 Aligned_cols=106 Identities=14% Similarity=0.077 Sum_probs=68.0
Q ss_pred CCchhHHHHHHHHHHHcCC---CCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHH
Q 048587 5 GSQTWDCAFAVQALLACNL---TDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEA 81 (150)
Q Consensus 5 ~s~~wdTala~~AL~~aG~---~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~a 81 (150)
..++|.+++.+.+|+.+.. .+++.+...++++||.+.-...+ .|+|...... .|. ... ..++..+-+.+
T Consensus 49 ~k~~~~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~-~Gg~~~~~~~--~g~----~~~-~~~~l~~~a~~ 120 (384)
T cd00249 49 DRRLWLQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPD-HGGWYFALDQ--DGR----PVD-ATKDLYSHAFA 120 (384)
T ss_pred CCeEEEecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCC-CCCEEEEEcC--CCC----Ccc-cccchHHHHHH
Confidence 4678999999999987632 35567788999999999655320 1666433210 121 001 12467789999
Q ss_pred HHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhccc-CCCCc
Q 048587 82 LLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQS-QTGGV 122 (150)
Q Consensus 82 l~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn-~dGGW 122 (150)
|.||..+.+. .|++...+..++.+++|....- ++||+
T Consensus 121 l~ala~~~~a----t~d~~~l~~A~~~~~~l~~~~~~~~g~~ 158 (384)
T cd00249 121 LLAAAQAAKV----GGDPEARALAEETIDLLERRFWEDHPGA 158 (384)
T ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 9999987642 2344455667777888877653 45765
No 64
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=92.67 E-value=0.12 Score=41.43 Aligned_cols=67 Identities=22% Similarity=0.321 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcc-cchHHHHHHHHHhcCCCCcccCCCCCHHHHHHH
Q 048587 30 ILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVS-DCTAEALLCCLYFSMLPPEIVGEKMEPERYYDA 108 (150)
Q Consensus 30 ~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~-d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~ra 108 (150)
.+.|-++||.++|..| ||++|.. .-||+ .+|=.|+.-+..++. ..+..++.
T Consensus 7 ~l~rvi~fi~~Rrhed---------------GGy~f~~---~Lpdti~~TyYAi~i~s~lg~----------evPr~Ekt 58 (274)
T COG1689 7 NLNRVIEFIEKRRHED---------------GGYCFVS---QLPDTINDTYYAIKIYSLLGH----------EVPRKEKT 58 (274)
T ss_pred hHHHHHHHHHHhhcCC---------------CCeEEec---cCcchhhhhhhhhhhhhhcCC----------cCchHHHH
Confidence 4678999999999986 5555532 24666 889999999888763 33567899
Q ss_pred HHHHHh-cccCCCCccc
Q 048587 109 VNCIIS-MQSQTGGVPA 124 (150)
Q Consensus 109 v~wL~~-~Qn~dGGW~~ 124 (150)
|+||.+ ||..-+|...
T Consensus 59 iefL~d~~qt~~~~~a~ 75 (274)
T COG1689 59 IEFLYDQMQTAGVGVAM 75 (274)
T ss_pred HHHHHHHHHHhhhHHHH
Confidence 999998 7888888754
No 65
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=92.60 E-value=0.31 Score=40.30 Aligned_cols=101 Identities=17% Similarity=0.118 Sum_probs=61.9
Q ss_pred chhHHHHHHHHHHH---cCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHH
Q 048587 7 QTWDCAFAVQALLA---CNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALL 83 (150)
Q Consensus 7 ~~wdTala~~AL~~---aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~ 83 (150)
.+|-++--+.+++. .| .+++.+.++++++||.+.-... ..|+|.... +.|+ +... ..+..+.+++|+
T Consensus 19 ~~~~q~R~~~~fa~a~~~g-~~~~l~~A~~~~~fl~~~~~D~-~~Gg~~~~~---~~~~-~~~~----~~~~Y~~af~l~ 88 (346)
T PF07221_consen 19 RLWVQARQLYTFARAYRLG-RPEYLELAEHGFDFLRKHFRDP-EYGGWYRSL---DDGG-PLDP----QKDLYDQAFALL 88 (346)
T ss_dssp EHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHHTTBTT-TTSSBSSEE---ETTE-EEE------EEHHHHHHHHH
T ss_pred eeeeeHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHhcccC-CCCCEEEEe---CCCC-CCcc----ccchHHHHHHHH
Confidence 34555555555542 45 4457889999999999987621 125554222 1233 2111 235557889999
Q ss_pred HHHHhcCCCCcccCCCCCHHHHHHHHHHHHhc-ccCCCCc
Q 048587 84 CCLYFSMLPPEIVGEKMEPERYYDAVNCIISM-QSQTGGV 122 (150)
Q Consensus 84 aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~-Qn~dGGW 122 (150)
||..+. ..|.+...+.+++++++|... .++++|.
T Consensus 89 ala~~~-----~tg~~~~~~~A~~~~~~l~~~~~d~~~g~ 123 (346)
T PF07221_consen 89 ALAEAR-----ATGDPEALELAEQTLEFLERRFWDPEGGG 123 (346)
T ss_dssp HHHHHH-----CTT-TTHHHHHHHHHHHHHHHTEETTTTE
T ss_pred HHHHHH-----HhCChhHHHHHHHHHHHHHHHhcccccCc
Confidence 998853 245566677888899998876 5665443
No 66
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.96 E-value=0.66 Score=39.51 Aligned_cols=70 Identities=19% Similarity=0.264 Sum_probs=48.4
Q ss_pred cHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHHHhcCCCCcccCCCCCHHHHHH
Q 048587 28 GPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYD 107 (150)
Q Consensus 28 ~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~r 107 (150)
++--+-.++||.++|.=+ |+++ |=++.-+..|| |=.++.||..+.+ ++.-.+++
T Consensus 218 deL~eG~~~wi~~CQtyE---GG~G---------G~P~~EAHGGY-----TFCalAalalLn~---------~d~ln~~~ 271 (423)
T KOG0365|consen 218 DELFEGTLDWIASCQTYE---GGFG---------GEPGVEAHGGY-----TFCALAALALLNE---------MDQLNLEK 271 (423)
T ss_pred HHHHHHHHHHHHhccccc---CCcC---------CCccccccCCe-----eHHHHHHHHHHhh---------hhhhCHHH
Confidence 367788999999999986 8864 22333333344 6666777776664 23445677
Q ss_pred HHHHHHhcccC-CCCcc
Q 048587 108 AVNCIISMQSQ-TGGVP 123 (150)
Q Consensus 108 av~wL~~~Qn~-dGGW~ 123 (150)
=++|...+|.+ .|||.
T Consensus 272 Ll~W~~~RQm~~E~GFq 288 (423)
T KOG0365|consen 272 LLEWAVRRQMRFEGGFQ 288 (423)
T ss_pred HHHHHHHhhhhhhcccc
Confidence 79999999994 78874
No 67
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=90.91 E-value=0.91 Score=38.20 Aligned_cols=90 Identities=21% Similarity=0.167 Sum_probs=53.3
Q ss_pred CchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHH
Q 048587 6 SQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCC 85 (150)
Q Consensus 6 s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL 85 (150)
+..+.=+|+++||+-.+.... ...+.+++.. +..+ +. .++.=.||.+|.|++||
T Consensus 143 TnyYq~sL~vLALCv~~~~~~----~~~v~kL~~~-~~~~-----~~----------------~~~~~sVDT~AmA~LAL 196 (326)
T PF01122_consen 143 TNYYQYSLGVLALCVHNKRVS----LSVVAKLLKA-ENHN-----FY----------------HGSQFSVDTGAMAVLAL 196 (326)
T ss_dssp SGHHHHHHHHHHHHHTTHHHH----HHHHHHHHHH-HHSS-----TS----------------S-STCHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHccCCCcC----HHHHHHHHHH-HHhh-----cc----------------cCCCCCccHHHHHHHHH
Confidence 445788999999999874321 2223333333 2221 00 01123689999999999
Q ss_pred HHhcCCCCcccCC---CCCHHHHHHHHHHHHhcccCCCCcc
Q 048587 86 LYFSMLPPEIVGE---KMEPERYYDAVNCIISMQSQTGGVP 123 (150)
Q Consensus 86 ~~~~~~~~~~~g~---~~~~~~i~rav~wL~~~Qn~dGGW~ 123 (150)
.=+.+... .|. .....+|++.++.|++.|.+||-+|
T Consensus 197 tCv~~~~~--~~~~~~~~i~~~i~~~~~kIl~~q~~~G~~G 235 (326)
T PF01122_consen 197 TCVKNSNP--NGPELRRRIQQAIRSLVEKILSQQKPNGLFG 235 (326)
T ss_dssp HHHHTTTS--TTGGGHHHHHHHHHHHHHHHHHTB-TTS-BS
T ss_pred HHHhccCc--CcHhHHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 87764221 110 1224567888888999999999987
No 68
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=90.62 E-value=1.1 Score=40.92 Aligned_cols=81 Identities=11% Similarity=0.181 Sum_probs=54.3
Q ss_pred CCccHHHHHHHHHHHhhccCCCCCCCcccc----cCCCC--CCccccCCCCCCCCcccchHHHHHHHHHhcCCCCcccCC
Q 048587 25 DEIGPILMKAHDFLKTSQVTDNPPGDFESM----FRHTS--KGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGE 98 (150)
Q Consensus 25 ~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~----~~~~~--~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~ 98 (150)
.++.+.++|++-=|+.++..+ ++|..-.. .+... ...|+|.+. || =|.+.+++||.+++
T Consensus 247 ~~~~~~~~rS~lvLK~~~d~~-~~GAiIAA~Tts~pe~~g~~~n~dYryv---W~--RD~a~~a~AL~~~G--------- 311 (648)
T TIGR01535 247 GKGNSLYYVSMMILKAHEDKT-NPGAYIASLSIPWGDGQADDNTGGYHLV---WP--RDLYQVANAFLAAG--------- 311 (648)
T ss_pred chHHHHHHHHHHHHHHhcCCC-CCCcEEEecCCCCCccCCCCCCCceEEE---eh--hhHHHHHHHHHHCC---------
Confidence 345778888888888887763 35765221 11111 112544332 32 26788888999887
Q ss_pred CCCHHHHHHHHHHHHhcccCCCCc
Q 048587 99 KMEPERYYDAVNCIISMQSQTGGV 122 (150)
Q Consensus 99 ~~~~~~i~rav~wL~~~Qn~dGGW 122 (150)
..+..++.++||...|.++|.|
T Consensus 312 --~~~~a~~~~~~l~~~~~~~G~~ 333 (648)
T TIGR01535 312 --DVDSALRSLDYLAKVQQDNGMF 333 (648)
T ss_pred --CHHHHHHHHHHHHHHhccCCCc
Confidence 4677899999999999999987
No 69
>PLN02592 ent-copalyl diphosphate synthase
Probab=90.62 E-value=0.14 Score=47.78 Aligned_cols=42 Identities=14% Similarity=-0.006 Sum_probs=28.5
Q ss_pred CcccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 048587 73 PVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPA 124 (150)
Q Consensus 73 pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~ 124 (150)
|.+-|||++ |++.-. . | ...+..-.+++||+..|.+||||+.
T Consensus 95 ~S~YDTAWV--AmVp~~--~----g--~~~p~FP~~~~wIl~nQ~~DGsWG~ 136 (800)
T PLN02592 95 ISAYDTAWV--ALVEDI--N----G--SGTPQFPSSLQWIANNQLSDGSWGD 136 (800)
T ss_pred CcHHHhHHH--hhcccC--C----C--CCCCCCHHHHHHHHHccCCCCCCCC
Confidence 455689994 332211 1 1 1235566899999999999999987
No 70
>PLN02279 ent-kaur-16-ene synthase
Probab=89.02 E-value=0.18 Score=46.96 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhcccCCCCcccc
Q 048587 102 PERYYDAVNCIISMQSQTGGVPAW 125 (150)
Q Consensus 102 ~~~i~rav~wL~~~Qn~dGGW~~~ 125 (150)
.+.--.+++||+..|.+||+|+..
T Consensus 72 ~p~Fp~~~~wil~nQ~~dGsWg~~ 95 (784)
T PLN02279 72 APLFPECVKWLLENQLEDGSWGLP 95 (784)
T ss_pred CCCChHHHHHHHhcCCCCCCCCCC
Confidence 455678999999999999999974
No 71
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=87.44 E-value=0.79 Score=41.33 Aligned_cols=36 Identities=11% Similarity=-0.070 Sum_probs=31.5
Q ss_pred chHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCcc
Q 048587 77 CTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVP 123 (150)
Q Consensus 77 ~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~ 123 (150)
|++.+++||++++ ..+..++.++||.+.|.+||+|.
T Consensus 299 D~~~~a~Al~~~G-----------~~~~a~~~l~~l~~~q~~~G~~~ 334 (616)
T TIGR01577 299 DASYIATALDRAG-----------YHDRVDRFFRWAMQTQSRDGSWQ 334 (616)
T ss_pred cHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhhCcCCCcc
Confidence 6888999999987 45778999999999999999973
No 72
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=86.66 E-value=1.5 Score=43.53 Aligned_cols=102 Identities=17% Similarity=0.165 Sum_probs=59.0
Q ss_pred CCchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCC-CCCcccccCCCCCCccccCCCCCCCCcccchHHHHH
Q 048587 5 GSQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNP-PGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALL 83 (150)
Q Consensus 5 ~s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~-~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~ 83 (150)
.+.+..-+....||.-++.+.. ...+.+ |++.-...+. ...|........+.+|.+... --+++.|+.||.
T Consensus 1095 ~~~~~~~a~~ayAl~l~~sp~a-~~~~~~----l~~~a~~~~d~~~~~~~~~~~~~~~~~~~q~~---s~~VE~tsYaLL 1166 (1436)
T KOG1366|consen 1095 SMDVYTVAITAYALQLAKSPQA-AKALAK----LKSLARVEGDRRYWWASALKAKNAVKYSPQAR---SIDVETTAYALL 1166 (1436)
T ss_pred ccccchHHHHHHHHHhccCchH-HHHHHh----hhhhhcccCCceeeeeccccccCcccCCCccc---hhhccchHHHHH
Confidence 3566777778888887776533 344444 3333222210 112322222222222222111 138899999999
Q ss_pred HHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 048587 84 CCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAW 125 (150)
Q Consensus 84 aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~ 125 (150)
+++.+... + .+--.+.||.+.||..|||++-
T Consensus 1167 ~~~~~~~~-------~----~~~pivrWl~~qr~~~GGf~ST 1197 (1436)
T KOG1366|consen 1167 AYLLLAQV-------D----YALPIVRWLVEQRNALGGFSST 1197 (1436)
T ss_pred HHHHhccc-------C----cCchhHhhhhhhhcccCceeeh
Confidence 99887631 1 4455689999999999999753
No 73
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.48 E-value=2.4 Score=35.46 Aligned_cols=70 Identities=20% Similarity=0.228 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHH---HHHHHHhcCCCCcccCCCCCHHHH
Q 048587 29 PILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEA---LLCCLYFSMLPPEIVGEKMEPERY 105 (150)
Q Consensus 29 ~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~a---l~aL~~~~~~~~~~~g~~~~~~~i 105 (150)
..|.|-++||+.+|..+ |++- |+ .+- | +||-.| ...|..+... ...+ -
T Consensus 228 ~~~erlirWli~RQ~~s---gGfq--------GR------~NK-p--~DTCYaFWigasLklL~~~-------~~~d--~ 278 (347)
T KOG0367|consen 228 SKVERLIRWLIQRQVSS---GGFQ--------GR------TNK-P--VDTCYAFWIGASLKLLDAD-------WLID--K 278 (347)
T ss_pred cCHHHHHHHHHHHhhcc---CCcC--------CC------CCC-C--chhHHHHHHHHHHHHccch-------Hhhh--H
Confidence 44899999999999986 6653 21 111 2 234333 3333333311 1111 1
Q ss_pred HHHHHHHHhcccCC-CCccccCC
Q 048587 106 YDAVNCIISMQSQT-GGVPAWEP 127 (150)
Q Consensus 106 ~rav~wL~~~Qn~d-GGW~~~~~ 127 (150)
.+-.+||++.|.+= |||+-|..
T Consensus 279 ~~lr~fll~~Q~~~iGGFsK~P~ 301 (347)
T KOG0367|consen 279 QVLRKFLLSTQDKLIGGFSKWPE 301 (347)
T ss_pred HHHHHHHHHhhhhhcCcccCCCc
Confidence 24468999999986 99988763
No 74
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=85.17 E-value=1.9 Score=35.57 Aligned_cols=80 Identities=16% Similarity=0.090 Sum_probs=49.4
Q ss_pred ccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHHH-hcCCCCcccCCCCCHHHH
Q 048587 27 IGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLY-FSMLPPEIVGEKMEPERY 105 (150)
Q Consensus 27 ~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~-~~~~~~~~~g~~~~~~~i 105 (150)
+.+.+++.++.|.+.|..+ |.|......+. ...++|++.||.+.-+|+. +... ....+...+.+
T Consensus 213 ~~~~~~~~~~~l~~~q~~~---G~w~~~~~~~~---------~~~~~etSatA~~a~~l~~gi~~g---~~d~~~y~~~a 277 (336)
T PF07470_consen 213 LLEIAKKLADALARYQDED---GLWYQDLDDPD---------PGNYRETSATAMFAYGLLRGIRLG---LLDPEEYRPAA 277 (336)
T ss_dssp HHHHHHHHHHHHHTTSTTT---SBEBSBTTTTT---------TTS-BEHHHHHHHHHHHHHHHHTT---SSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCC---CCcceecCCCC---------CCCcccHHHHHHHHHHHHHHHHcC---CCccHHHHHHH
Confidence 4556777788888888864 66643222210 0136788888888888865 3221 11112346789
Q ss_pred HHHHHHHHhc-ccCCCC
Q 048587 106 YDAVNCIISM-QSQTGG 121 (150)
Q Consensus 106 ~rav~wL~~~-Qn~dGG 121 (150)
+|+.+.|++. =++||.
T Consensus 278 ~~a~~~l~~~~~~~dG~ 294 (336)
T PF07470_consen 278 EKALEALLSNAIDPDGK 294 (336)
T ss_dssp HHHHHHHHHCEB-TTSS
T ss_pred HHHHHHHHhCccCCCCC
Confidence 9999999999 666776
No 75
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=80.08 E-value=4.5 Score=40.36 Aligned_cols=55 Identities=15% Similarity=-0.040 Sum_probs=42.5
Q ss_pred CCcccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcch
Q 048587 72 WPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRRAPS 132 (150)
Q Consensus 72 ~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~~~~~~~ 132 (150)
.+.+..||.+|+.+..+.+ + ..++...+.+|++||..+|.++|.+-.-..--..+
T Consensus 999 ~~stWLtafvlr~f~~a~~-~-----i~id~~~i~~a~~wl~~~Qk~~GsF~e~~~v~~~~ 1053 (1436)
T KOG1366|consen 999 SGSTWLTAFVLRVFSQAKE-Y-----IFIDPNVITQALNWLSQQQKENGSFKEVGEVLHNE 1053 (1436)
T ss_pred cccHHHHHHHHHHhhhccC-c-----eEecHHHHHHHHHHHHHhhccCceEeccccccchh
Confidence 4567789999999988864 2 24678899999999999999999997654333333
No 76
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=74.03 E-value=40 Score=27.80 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=31.8
Q ss_pred hHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccCC
Q 048587 78 TAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEP 127 (150)
Q Consensus 78 Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~~ 127 (150)
.+-.+.+|+.+... .+.+...+.++++++|+.+.+.++|.|+....
T Consensus 167 ~aGI~~~L~~~~~~----~~~~~~~~~i~~~i~~~~~~~~~~g~w~~~~~ 212 (343)
T cd04794 167 LAGILYILLQTPLF----LLKPSLAPLIKRSLDYLLSLQFPSGNFPSSLG 212 (343)
T ss_pred HHHHHHHHHhhhhh----cCCccHHHHHHHHHHHHHHhhccCCCCCCccC
Confidence 44445556555421 23345678899999999999999999976543
No 77
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=72.07 E-value=26 Score=30.27 Aligned_cols=102 Identities=17% Similarity=0.110 Sum_probs=61.8
Q ss_pred CCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCC-----cccchHHHHHHHHHhcCCCCccc
Q 048587 22 NLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWP-----VSDCTAEALLCCLYFSMLPPEIV 96 (150)
Q Consensus 22 G~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~p-----d~d~Ta~al~aL~~~~~~~~~~~ 96 (150)
|..+++...+..+++|+.+.-... .|+ |.|-..+.+-| |.-..++||+|+..+.. +
T Consensus 71 g~~~~~~~~v~hG~~y~~~~~R~~--~gg------------~~~~~~~dg~~~Dat~d~Y~haFallA~A~~a~-----a 131 (388)
T COG2942 71 GWRGPWLDAVAHGIAYLARVGRDP--EGG------------WYFALDNDGGPVDATKDLYGHAFALLAAAHAAT-----A 131 (388)
T ss_pred cCCccHHHHHHhHHHHHHhcCcCC--CCC------------eEEEecCCCCcccccHhHHHHHHHHHHHHHHHh-----c
Confidence 444557889999999998755542 244 44433333221 34457899999988652 4
Q ss_pred CCCCCHHHHHHHHHHHHhcccC-CCCccccCCCCcchhhhccChhhh
Q 048587 97 GEKMEPERYYDAVNCIISMQSQ-TGGVPAWEPRRAPSWLESLNPIEF 142 (150)
Q Consensus 97 g~~~~~~~i~rav~wL~~~Qn~-dGGW~~~~~~~~~~~l~~~~~~e~ 142 (150)
|.+...+...++.+.|...=-+ +=+=+-|+.+++.+....=||-.+
T Consensus 132 ~~~~a~~~~~~a~~~l~~~~~~~~~pl~~~e~~~~~~~pl~sNp~MH 178 (388)
T COG2942 132 GPPRADELLDEALDVLERRFWREEHPLGGFEEDNPGSAPLGSNPHMH 178 (388)
T ss_pred CChhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCccCCCcchH
Confidence 5566678888888887754221 114444666666666545556554
No 78
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=68.89 E-value=37 Score=28.00 Aligned_cols=106 Identities=14% Similarity=0.098 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHHHhc
Q 048587 10 DCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFS 89 (150)
Q Consensus 10 dTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~ 89 (150)
..+..++.|.+.--++++.+.+++.++++.+.-...+ .|+|.....+. .|. ........|| .++++.+|+.+.
T Consensus 243 e~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~d~~-~G~~~~~~~~~-~~~-~~~~~~~~w~----~~E~~~a~~~l~ 315 (384)
T cd00249 243 EWAWLLLRIASRSGQAWLIEKARRLFDLALALGWDPE-RGGLYYSFLDD-GGL-LEDDDKRWWP----QTEALKAALALA 315 (384)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCcCcc-CCCEEEeeECC-CCC-cccccccccH----HHHHHHHHHHHH
Confidence 4455555555543344567778888888887664321 25544311110 011 1111111232 678989988875
Q ss_pred CCCCcccCCCCCHHHHHHHHHHHHhcc--cCCCCccccC
Q 048587 90 MLPPEIVGEKMEPERYYDAVNCIISMQ--SQTGGVPAWE 126 (150)
Q Consensus 90 ~~~~~~~g~~~~~~~i~rav~wL~~~Q--n~dGGW~~~~ 126 (150)
.. .|++...+..++..+++...- ...|||-.+-
T Consensus 316 ~~----tgd~~~~~~~~~~~~~~~~~~~d~~~G~w~~~~ 350 (384)
T cd00249 316 GI----TGDERYWQWYQRAWAYLWRHFIDPEYGLWFGYL 350 (384)
T ss_pred Hh----cCCHHHHHHHHHHHHHHHHhcCCCCCCcceeeE
Confidence 32 233334455666666676522 2379997654
No 79
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=66.11 E-value=22 Score=31.41 Aligned_cols=77 Identities=13% Similarity=0.126 Sum_probs=50.6
Q ss_pred CCCccHHHHHHHHHHHhhccCCCCCCCcccccCCC---CCCccccCCCCCCCCcccchHHHHHHHHHhcCCCCcccCCCC
Q 048587 24 TDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHT---SKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKM 100 (150)
Q Consensus 24 ~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~---~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~ 100 (150)
+++....+.+.+++|++.|.+| |..+.+.... ....|.= . ..+.-+-...|.||+...+ ..|...
T Consensus 78 D~~l~~~~d~~V~~l~~~Q~~d---GYl~~~~~~~~~~~~~~w~~--~---~he~Y~~~~ll~gl~~~y~----~tG~~~ 145 (520)
T PF07944_consen 78 DPELKAKADEIVDELAAAQQPD---GYLGTYPEERNFNPDDRWAP--D---MHELYCLGKLLEGLIDYYE----ATGNER 145 (520)
T ss_pred CHHHHHHHHHHHHHHHHhccCC---ceecccccccccccccCCCC--C---ccceehHhHHHHHHHHHHH----HHCcHH
Confidence 4456788999999999999987 6544332222 2344442 1 1235567778888887643 235555
Q ss_pred CHHHHHHHHHHH
Q 048587 101 EPERYYDAVNCI 112 (150)
Q Consensus 101 ~~~~i~rav~wL 112 (150)
--+.+.|..+|+
T Consensus 146 ~L~v~~k~ad~~ 157 (520)
T PF07944_consen 146 ALDVATKLADWV 157 (520)
T ss_pred HHHHHHHHHHHH
Confidence 667888999999
No 80
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=65.94 E-value=25 Score=28.96 Aligned_cols=27 Identities=26% Similarity=0.600 Sum_probs=20.9
Q ss_pred CCCccHHHHHHHHHHHhhccCCCCCCCccc
Q 048587 24 TDEIGPILMKAHDFLKTSQVTDNPPGDFES 53 (150)
Q Consensus 24 ~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~ 53 (150)
.+++.+.++++++|+.+.+..+ |.|..
T Consensus 183 ~~~~~~~i~~~i~~~~~~~~~~---g~w~~ 209 (343)
T cd04794 183 KPSLAPLIKRSLDYLLSLQFPS---GNFPS 209 (343)
T ss_pred CccHHHHHHHHHHHHHHhhccC---CCCCC
Confidence 3557889999999999887654 77754
No 81
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=65.31 E-value=22 Score=32.81 Aligned_cols=97 Identities=15% Similarity=0.040 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHcCCC---CCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHH
Q 048587 10 DCAFAVQALLACNLT---DEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCL 86 (150)
Q Consensus 10 dTala~~AL~~aG~~---~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~ 86 (150)
.-++.+.||+.+|.. +++-+..+++.+|+++....+ .....+++..... .+-..|=|..+.||+
T Consensus 412 wNglmi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~----rl~~~~~~G~a~~---------~g~leDYA~~i~gll 478 (667)
T COG1331 412 WNGLMIAALAEAGRVLGDPEYLEAAERAADFILDNLYVD----RLLRRYRGGEAAV---------AGLLEDYAFLILGLL 478 (667)
T ss_pred cHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhccc----chheeeecCcccc---------cccchhHHHHHHHHH
Confidence 357888899888653 346778899999999988863 2222222211111 234556777888887
Q ss_pred HhcCCCCcccCCCCCHHHHHHH----HHHHHhcccCCCCccccC
Q 048587 87 YFSMLPPEIVGEKMEPERYYDA----VNCIISMQSQTGGVPAWE 126 (150)
Q Consensus 87 ~~~~~~~~~~g~~~~~~~i~ra----v~wL~~~Qn~dGGW~~~~ 126 (150)
.+-+.- -..+.++.| -+.+...+.+.|||-...
T Consensus 479 ~lye~t-------~d~~yL~~A~~L~~~~i~~f~d~~gGf~~t~ 515 (667)
T COG1331 479 ALYEAT-------GDLAYLEKAIELADEAIADFWDDEGGFYDTP 515 (667)
T ss_pred HHHHhh-------CcHHHHHHHHHHHHHHHHHhcCCCCCcccCC
Confidence 775321 123444444 445556677778864433
No 82
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=63.92 E-value=11 Score=28.08 Aligned_cols=43 Identities=12% Similarity=0.078 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHHHhcC
Q 048587 31 LMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSM 90 (150)
Q Consensus 31 i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~ 90 (150)
|+++++|++.++-. . .++ +. .+|+ .+..||+..+..||..++-
T Consensus 2 ie~~I~w~~~r~~~---v-~YS-m~-----~R~G-------~~s~DCSs~V~~ALr~aG~ 44 (145)
T PF05382_consen 2 IEKAINWMEARKGK---V-TYS-MD-----SRNG-------PDSYDCSSFVYQALRAAGF 44 (145)
T ss_pred HHHHHHHHHHhcCC---c-eEh-hh-----hcCC-------CCcCchHHHHHHHHHHcCC
Confidence 78999999876543 1 111 00 1111 2336999999999998764
No 83
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=63.44 E-value=16 Score=32.30 Aligned_cols=98 Identities=11% Similarity=0.004 Sum_probs=54.4
Q ss_pred ccHHHHHHHHHHHhhccCC-CCCCCccc--ccCCCCCCccccCCCCCCCCcccchHHHHHHHHHhcCCCCcccCCCCCHH
Q 048587 27 IGPILMKAHDFLKTSQVTD-NPPGDFES--MFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPE 103 (150)
Q Consensus 27 ~~~~i~ra~~wL~~~Q~~d-~~~G~~~~--~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~ 103 (150)
+.++.+...++++..|... ...+.... .......|+|.-......+.+. +++.-|.|+..+.. ..+.+.-.+
T Consensus 9 ~~~~~~~~~~~~l~~~~d~ll~~~r~~agl~~~~~~~g~we~~~~~~~~~~~-~~g~wl~a~a~~~~----~~~D~~l~~ 83 (520)
T PF07944_consen 9 WKRRQELNRAYLLPLDPDRLLYNFRSHAGLPNFAIAYGGWEGEFPGWWFRGH-DVGKWLEAAAYAYA----YTGDPELKA 83 (520)
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhcCcccCCCCccccCCCCccCCCCCccCCC-cHHHHHHHHHHHHH----HCCCHHHHH
Confidence 3566777888888766532 00111111 1123346777622222222222 35566666555431 113344567
Q ss_pred HHHHHHHHHHhcccCCCCccccCCCC
Q 048587 104 RYYDAVNCIISMQSQTGGVPAWEPRR 129 (150)
Q Consensus 104 ~i~rav~wL~~~Qn~dGGW~~~~~~~ 129 (150)
.+++-|++|+++|.+||=.++|....
T Consensus 84 ~~d~~V~~l~~~Q~~dGYl~~~~~~~ 109 (520)
T PF07944_consen 84 KADEIVDELAAAQQPDGYLGTYPEER 109 (520)
T ss_pred HHHHHHHHHHHhccCCceeccccccc
Confidence 88999999999999999777776444
No 84
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=63.25 E-value=40 Score=27.06 Aligned_cols=93 Identities=12% Similarity=0.000 Sum_probs=47.2
Q ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHHHhcCCC
Q 048587 13 FAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLP 92 (150)
Q Consensus 13 la~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~ 92 (150)
+++.-|.+. -++++.+.+.+++++|++....+ ..+..+ ......--+| ...++..+.+|..+.+.
T Consensus 90 ~~ll~l~~~-~~~~~l~~a~~~~~~l~~~~~~~---~~~~~~-~~~~~~~~G~---------~hG~aGi~~~L~~l~~~- 154 (321)
T cd04791 90 LALLYFART-GDPALLEAAAKIAELLAEALERG---DPALLW-PDFDRVDHGL---------LHGWAGIALFLLRLYKA- 154 (321)
T ss_pred HHHHHHHhc-CChHHHHHHHHHHHHHHHHhhcc---cccccc-ccCCCCCCcc---------ccCcHHHHHHHHHHHHH-
Confidence 344444444 34557788899999998865542 111111 1100011111 22355555566555421
Q ss_pred CcccCCCCCHHHHHHHHHHHHhccc-CCCCcc
Q 048587 93 PEIVGEKMEPERYYDAVNCIISMQS-QTGGVP 123 (150)
Q Consensus 93 ~~~~g~~~~~~~i~rav~wL~~~Qn-~dGGW~ 123 (150)
.+.+...+..+++++++++... .++||.
T Consensus 155 ---t~d~~~l~~A~~~~~~~~~~~~~~~~g~~ 183 (321)
T cd04791 155 ---TGDSRYLELAEEALDKELARAVVDDGGLL 183 (321)
T ss_pred ---HCCHHHHHHHHHHHHHHHHhhccCCCCce
Confidence 2333345667777888776544 457774
No 85
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=61.88 E-value=14 Score=30.28 Aligned_cols=77 Identities=23% Similarity=0.256 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHH---HcCCCC--CccHHHHHHHHHHHhhccCCCCCCC--cccccCCCCCCccccCCCCCCCCcccchHH
Q 048587 8 TWDCAFAVQALL---ACNLTD--EIGPILMKAHDFLKTSQVTDNPPGD--FESMFRHTSKGGWTFSNKDHGWPVSDCTAE 80 (150)
Q Consensus 8 ~wdTala~~AL~---~aG~~~--~~~~~i~ra~~wL~~~Q~~d~~~G~--~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~ 80 (150)
+=.||++.-+|+ ..|..+ +|.+.+.|+++.|.+.++.++ |. +..-..+...|+ |........+.-..+.
T Consensus 249 tSatA~~a~~l~~gi~~g~~d~~~y~~~a~~a~~~l~~~~~~~d--G~~~~~~~~~~~~~~~--Y~~~~~~~~~~~G~g~ 324 (336)
T PF07470_consen 249 TSATAMFAYGLLRGIRLGLLDPEEYRPAAEKALEALLSNAIDPD--GKLGLKGVCGGTPVGG--YQGRDYNVNDPYGDGY 324 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHCEB-TT--SSSBBTCEBETTTS-S--HHTEEEECCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhCccCCC--CCeEEeeeEeecCCCC--CCCCCCCCCcCcHHHH
Confidence 446777777884 467763 488999999999999944332 54 322122222233 1111111122234667
Q ss_pred HHHHHHHh
Q 048587 81 ALLCCLYF 88 (150)
Q Consensus 81 al~aL~~~ 88 (150)
.|+|+.++
T Consensus 325 fl~A~~e~ 332 (336)
T PF07470_consen 325 FLLALAEY 332 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777665
No 86
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=57.93 E-value=12 Score=25.13 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhcccCCCCccccCCCCc
Q 048587 102 PERYYDAVNCIISMQSQTGGVPAWEPRRA 130 (150)
Q Consensus 102 ~~~i~rav~wL~~~Qn~dGGW~~~~~~~~ 130 (150)
.+-|+.||+||++.-.+.-||-.|+-+++
T Consensus 55 teIiEnAVefiLrSMtR~tgF~E~~dk~g 83 (88)
T PF15144_consen 55 TEIIENAVEFILRSMTRSTGFMEFEDKQG 83 (88)
T ss_pred HHHHHHHHHHHHHHhhcccCceecCCCCC
Confidence 58899999999999999999999985544
No 87
>PLN00119 endoglucanase
Probab=56.82 E-value=96 Score=27.65 Aligned_cols=37 Identities=14% Similarity=0.313 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHc---CCC-CCccHHHHHHHHHHHhhccC
Q 048587 8 TWDCAFAVQALLAC---NLT-DEIGPILMKAHDFLKTSQVT 44 (150)
Q Consensus 8 ~wdTala~~AL~~a---G~~-~~~~~~i~ra~~wL~~~Q~~ 44 (150)
+|.-++++.-|... |.. .+|.+++++++.|...+..-
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~nY~~aL~~sl~Ff~aQRsG 49 (489)
T PLN00119 9 LWTLSICIVLLVMSMARGAVSTNYGEALTKSLLYFEAQRSG 49 (489)
T ss_pred hhHHHHHHHHHHHHHhcccccccHHHHHHHHHHHhHhcCCC
Confidence 57666666555432 433 46999999999999886654
No 88
>PLN02909 Endoglucanase
Probab=53.34 E-value=56 Score=29.09 Aligned_cols=99 Identities=11% Similarity=0.057 Sum_probs=49.5
Q ss_pred CccHHHHHHHHHHHhhccCCC---CCCCcccc--cCC------CCCCccccCCCCC---CCCcccchHHHHHHHHHhcCC
Q 048587 26 EIGPILMKAHDFLKTSQVTDN---PPGDFESM--FRH------TSKGGWTFSNKDH---GWPVSDCTAEALLCCLYFSML 91 (150)
Q Consensus 26 ~~~~~i~ra~~wL~~~Q~~d~---~~G~~~~~--~~~------~~~GgW~fs~~~~---~~pd~d~Ta~al~aL~~~~~~ 91 (150)
+|.+++++++.|...+..-.- -+..|... ..+ .-.|||- .-.++ +.|..-.+...+.+.......
T Consensus 34 nY~~aL~~sl~Fy~aQRsG~lp~~~~~~Wr~ds~l~Dg~~~~~DlsGGwy-DAGD~~Kf~~p~a~s~~~L~w~~~~y~~~ 112 (486)
T PLN02909 34 NYKDALTKSIIFLEAQRSGKLPPNNRVPWRGDSALDDGKLANVDLVGGYY-DAGDNVKYGLPMAFTVTTLAWSTLAYEKE 112 (486)
T ss_pred cHHHHHHHHHHHHHHhcCcCCCCCCCCCCCcccccccCCccccCCCCCce-eCCCCceeCCchHHHHHHHHHHHHHhHHH
Confidence 589999999999988665421 11234321 111 1256663 11111 123222222111222222111
Q ss_pred CCcccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 048587 92 PPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAW 125 (150)
Q Consensus 92 ~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~ 125 (150)
....-+.+...+.|+=+++||+.||..+|+.-..
T Consensus 113 ~~~~g~~~d~ldeikw~~D~llk~~~~~~~~y~q 146 (486)
T PLN02909 113 LRATGELENVRAAIRWGTDYFLKAASRKNRLYVQ 146 (486)
T ss_pred HhhcCChHHHHHHHHHHHHHHHHhccCCCeEEEE
Confidence 1100123444577888999999999988876443
No 89
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=53.13 E-value=22 Score=19.68 Aligned_cols=20 Identities=45% Similarity=0.546 Sum_probs=11.2
Q ss_pred HHHHHHHHcCCCCCccHHHHHHHHHH
Q 048587 13 FAVQALLACNLTDEIGPILMKAHDFL 38 (150)
Q Consensus 13 la~~AL~~aG~~~~~~~~i~ra~~wL 38 (150)
.+..||..++.+ +.+|++||
T Consensus 18 ~~~~AL~~~~~n------ve~A~~~L 37 (37)
T PF00627_consen 18 QAREALRACNGN------VERAVDWL 37 (37)
T ss_dssp HHHHHHHHTTTS------HHHHHHHH
T ss_pred HHHHHHHHcCCC------HHHHHHhC
Confidence 344555554432 67777776
No 90
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=51.71 E-value=19 Score=29.62 Aligned_cols=39 Identities=23% Similarity=0.251 Sum_probs=29.5
Q ss_pred CchhHHHHHHHHHHHcCC--CCCccHHHHHHHHHHHhhccC
Q 048587 6 SQTWDCAFAVQALLACNL--TDEIGPILMKAHDFLKTSQVT 44 (150)
Q Consensus 6 s~~wdTala~~AL~~aG~--~~~~~~~i~ra~~wL~~~Q~~ 44 (150)
.++++.+|+++||.++.. .+++.+.+++++++|.+.-..
T Consensus 78 ~~~Y~~af~l~ala~~~~tg~~~~~~~A~~~~~~l~~~~~d 118 (346)
T PF07221_consen 78 KDLYDQAFALLALAEARATGDPEALELAEQTLEFLERRFWD 118 (346)
T ss_dssp EEHHHHHHHHHHHHHHHCTT-TTHHHHHHHHHHHHHHHTEE
T ss_pred cchHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcc
Confidence 467899999999988522 245678888999999887543
No 91
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=51.71 E-value=1.2e+02 Score=27.85 Aligned_cols=111 Identities=13% Similarity=0.093 Sum_probs=72.0
Q ss_pred CchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCC-CcccccCCCCCCccccCCCCCCCCcccchHHHHHH
Q 048587 6 SQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPG-DFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLC 84 (150)
Q Consensus 6 s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G-~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~a 84 (150)
+.+-|.++-. |.-.|+-+..++++.+.++=|.+.-..+ | ++..+......|. . ....|=..+|.+-...
T Consensus 477 ~~~vDasll~--l~~fg~i~~~D~~~~~t~~~I~~~L~~~---~~gi~RY~~~~~d~~-~----~~~~~w~i~t~Wl~~~ 546 (612)
T COG3387 477 DDTVDASLLG--LVLFGFIPPDDPRILATVEAIERELLVD---GGGIRRYNNEYDDGL-G----GDNGPWIITTLWLSEY 546 (612)
T ss_pred cccccHHHhh--ccccCccCCCCHHHHHHHHHHHHHHhhc---CCcEEcCcccccccc-C----CCCCcceeehhHHHHH
Confidence 6667776544 3347775433788888888887766664 4 4543321001111 1 1112445689999999
Q ss_pred HHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhcc
Q 048587 85 CLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRRAPSWLESL 137 (150)
Q Consensus 85 L~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~~~~~~~~l~~~ 137 (150)
+.++++ .+..++-++||++.++++|=.++....+..+.+..+
T Consensus 547 ~~~~g~-----------~~~a~~ll~~l~~~a~~~gll~EQv~~~~G~~~g~~ 588 (612)
T COG3387 547 YLALGR-----------LDEAKKLLEWLLAFASPLGLLPEQVDDGSGEPLGAF 588 (612)
T ss_pred HHHccc-----------hHHHHHHHHHHHHhcCCCCCcchhhcCCCCccCCCC
Confidence 999873 345566799999999999999988766665555544
No 92
>PF11329 DUF3131: Protein of unknown function (DUF3131); InterPro: IPR021478 This bacterial family of proteins has no known function.
Probab=49.13 E-value=1.3e+02 Score=25.86 Aligned_cols=82 Identities=17% Similarity=0.272 Sum_probs=49.6
Q ss_pred CCchhHHHHHHHHHHHc---CCC--CCccHHHHHHHHHHHhhccCCCCCCCccc-ccCCCC--CCccccCCCC-CCCCcc
Q 048587 5 GSQTWDCAFAVQALLAC---NLT--DEIGPILMKAHDFLKTSQVTDNPPGDFES-MFRHTS--KGGWTFSNKD-HGWPVS 75 (150)
Q Consensus 5 ~s~~wdTala~~AL~~a---G~~--~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~-~~~~~~--~GgW~fs~~~-~~~pd~ 75 (150)
....||++.-++||+++ |+- ++.+.+|.|.+..|.+...-+ |.... .|.-.+ +-...-.... .+| ..
T Consensus 30 ~tT~wdiG~yL~al~AA~~lglIs~~e~~~Rl~~~L~tL~~lpl~~---g~lPn~~Y~t~T~~~~~~~~~p~~~~gw-Sa 105 (367)
T PF11329_consen 30 STTMWDIGSYLMALVAARELGLISREEFDQRLEKTLATLEKLPLFR---GHLPNKWYNTQTGQPVDYGNQPGERIGW-SA 105 (367)
T ss_pred ccChHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCcccC---CcCccceeecCcCcccccCCCCCccCCc-cH
Confidence 45689999999999877 442 246788999999999877764 54321 221111 1110001111 233 34
Q ss_pred cchHHHHHHHHHhcC
Q 048587 76 DCTAEALLCCLYFSM 90 (150)
Q Consensus 76 d~Ta~al~aL~~~~~ 90 (150)
-|.+.-+.+|..+..
T Consensus 106 vD~GrLl~~L~il~~ 120 (367)
T PF11329_consen 106 VDIGRLLIALRILKQ 120 (367)
T ss_pred hhHHHHHHHHHHHHH
Confidence 567888888888764
No 93
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=48.14 E-value=61 Score=33.16 Aligned_cols=72 Identities=19% Similarity=0.123 Sum_probs=52.8
Q ss_pred ccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHHHhcCCCCcccCCCCCHHHHH
Q 048587 27 IGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYY 106 (150)
Q Consensus 27 ~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~ 106 (150)
.+..++.++.=|.+.|..+ |.|+ =|+-. +.+|-=.|+.++.+|+.+++ .|..+..+++.
T Consensus 1197 ~~~~l~~a~~rL~~~Q~~~---G~F~---------~W~~~----~~~d~~ltaYa~~Fl~~A~e-----~g~~vp~~~~~ 1255 (1621)
T COG2373 1197 LRARLQDAIGRLLSLQGSN---GAFG---------LWGGN----GSGDPWLTAYAVDFLLRARE-----QGYSVPSDALN 1255 (1621)
T ss_pred HHHHHHHHHHHHHhhhhcC---Ccee---------ecCCC----CCcchhhhHHHHHHHhhhhh-----cCcCCCHHHHH
Confidence 4678999999999999986 6654 33311 23444579999999999853 46678899999
Q ss_pred HHHHHHH-hcccCC
Q 048587 107 DAVNCII-SMQSQT 119 (150)
Q Consensus 107 rav~wL~-~~Qn~d 119 (150)
++.++++ .+||+-
T Consensus 1256 ~~~~~~~~~l~n~~ 1269 (1621)
T COG2373 1256 QMLERLLEYLQNPG 1269 (1621)
T ss_pred HHHHHHHHHHhCcC
Confidence 9977544 578764
No 94
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=48.13 E-value=26 Score=35.60 Aligned_cols=61 Identities=25% Similarity=0.403 Sum_probs=40.9
Q ss_pred cccchHHHHHHHHHhcCCCCcc-cCCCCCHHHHHHHHHHHHhcccCCCCccccCC-CCcchhh
Q 048587 74 VSDCTAEALLCCLYFSMLPPEI-VGEKMEPERYYDAVNCIISMQSQTGGVPAWEP-RRAPSWL 134 (150)
Q Consensus 74 d~d~Ta~al~aL~~~~~~~~~~-~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~~-~~~~~~l 134 (150)
..-.|+..++.|+.+.+..... +.....+..++.++.=|+++|+.+|+|+.|.. .....||
T Consensus 1169 c~EQt~S~~~pll~~~~~~~~~~~~~~~~~~~l~~a~~rL~~~Q~~~G~F~~W~~~~~~d~~l 1231 (1621)
T COG2373 1169 CAEQTASRLLPLLYAQKATADPGAADNDLRARLQDAIGRLLSLQGSNGAFGLWGGNGSGDPWL 1231 (1621)
T ss_pred chhhhhhhHHHHHhhhhhhccccccchhHHHHHHHHHHHHHhhhhcCCceeecCCCCCcchhh
Confidence 3344777777777765432211 23334467899999999999999999999987 3333343
No 95
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=47.31 E-value=30 Score=18.92 Aligned_cols=21 Identities=33% Similarity=0.264 Sum_probs=12.7
Q ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHH
Q 048587 13 FAVQALLACNLTDEIGPILMKAHDFLK 39 (150)
Q Consensus 13 la~~AL~~aG~~~~~~~~i~ra~~wL~ 39 (150)
.+..||..++.+ +.+|++||.
T Consensus 17 ~~~~AL~~~~~d------~~~A~~~L~ 37 (38)
T cd00194 17 EARKALRATNNN------VERAVEWLL 37 (38)
T ss_pred HHHHHHHHhCCC------HHHHHHHHh
Confidence 455555555432 677888875
No 96
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=47.22 E-value=1.4e+02 Score=25.94 Aligned_cols=100 Identities=22% Similarity=0.156 Sum_probs=55.1
Q ss_pred chhHHHHHHHHHHHcCC--CCCccHHHHHHHHHHHhhccCC-CCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHH
Q 048587 7 QTWDCAFAVQALLACNL--TDEIGPILMKAHDFLKTSQVTD-NPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALL 83 (150)
Q Consensus 7 ~~wdTala~~AL~~aG~--~~~~~~~i~ra~~wL~~~Q~~d-~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~ 83 (150)
++++.+||++|+..+-. .++-++.+.++.+.|.+.-... ++.+.+.+.++...+= ..+| .=..++
T Consensus 114 d~Y~haFallA~A~~a~a~~~~a~~~~~~a~~~l~~~~~~~~~pl~~~e~~~~~~~pl--------~sNp----~MHl~E 181 (388)
T COG2942 114 DLYGHAFALLAAAHAATAGPPRADELLDEALDVLERRFWREEHPLGGFEEDNPGSAPL--------GSNP----HMHLLE 181 (388)
T ss_pred hHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCcc--------CCCc----chHHHH
Confidence 57889999999976422 2333678889999988755443 1234433322211111 1122 224555
Q ss_pred HHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCc
Q 048587 84 CCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGV 122 (150)
Q Consensus 84 aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW 122 (150)
|+++..+. .|+..-.+...+-++-+++.+-....+
T Consensus 182 A~LA~~e~----~~~~~~~~~A~~ia~l~~~rf~d~~~g 216 (388)
T COG2942 182 AMLAAYEA----TGEKTWLDRADRIADLIISRFADAESG 216 (388)
T ss_pred HHHHHHhc----cCchhHHHHHHHHHHHHHHHhhhcccC
Confidence 66655432 233344556666778888876554333
No 97
>PRK03430 hypothetical protein; Validated
Probab=43.75 E-value=24 Score=26.64 Aligned_cols=25 Identities=12% Similarity=0.068 Sum_probs=20.0
Q ss_pred HHHHHHcCCCCCccHHHHHHHHHHHhhc
Q 048587 15 VQALLACNLTDEIGPILMKAHDFLKTSQ 42 (150)
Q Consensus 15 ~~AL~~aG~~~~~~~~i~ra~~wL~~~Q 42 (150)
..-|.++|.. .+-|.||++||.+-.
T Consensus 27 ~~~L~~aGF~---~~eI~~AL~WLe~L~ 51 (157)
T PRK03430 27 EDDLTDAGFH---REDIYNALLWLEKLA 51 (157)
T ss_pred HHHHHHcCCC---HHHHHHHHHHHHHHH
Confidence 3457889987 568999999998854
No 98
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=38.37 E-value=43 Score=18.16 Aligned_cols=8 Identities=25% Similarity=0.663 Sum_probs=5.3
Q ss_pred HHHHHHHH
Q 048587 31 LMKAHDFL 38 (150)
Q Consensus 31 i~ra~~wL 38 (150)
+.+|++||
T Consensus 29 ~~~A~~~L 36 (37)
T smart00165 29 VERAAEYL 36 (37)
T ss_pred HHHHHHHH
Confidence 56666666
No 99
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=37.62 E-value=25 Score=30.87 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhcccCCCCccccCC
Q 048587 102 PERYYDAVNCIISMQSQTGGVPAWEP 127 (150)
Q Consensus 102 ~~~i~rav~wL~~~Qn~dGGW~~~~~ 127 (150)
..+.-.|.+||..-|++-|||+--.+
T Consensus 379 ~aaFyaAadWlV~NQd~kGGW~~pV~ 404 (594)
T KOG3760|consen 379 SAAFYAAADWLVKNQDDKGGWSVPVE 404 (594)
T ss_pred HHHHHHHHHHHhhCCCCCCCCcchhh
Confidence 45667899999999999999986553
No 100
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=37.25 E-value=51 Score=30.13 Aligned_cols=36 Identities=14% Similarity=0.075 Sum_probs=29.9
Q ss_pred chHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCcc
Q 048587 77 CTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVP 123 (150)
Q Consensus 77 ~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~ 123 (150)
+++.+..||..++ ..+..++..+||..+|+++|-|.
T Consensus 289 D~~~~~~AL~~~G-----------~~~~a~~~f~~l~~~~~~~~~~~ 324 (612)
T COG3387 289 DASYAALALLAIG-----------YKKEALRFFEFLPDVQTPNGKLY 324 (612)
T ss_pred cHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhhCCCCcee
Confidence 5778888898887 56778899999999999988653
No 101
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=33.99 E-value=1.9e+02 Score=24.01 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=19.4
Q ss_pred HcC-CCCCccHHHHHHHHHHHhhccCC
Q 048587 20 ACN-LTDEIGPILMKAHDFLKTSQVTD 45 (150)
Q Consensus 20 ~aG-~~~~~~~~i~ra~~wL~~~Q~~d 45 (150)
..+ ..+.+.+.++++++|+.+....+
T Consensus 186 ~~~~~~~~~~~~i~~~l~~~~~~~~~~ 212 (382)
T cd04793 186 ERGIRVDGQLEAIQKIIAWLDRWRLKN 212 (382)
T ss_pred HcCCCcCChHHHHHHHHHHHHHHHHhC
Confidence 345 34556889999999999977654
No 102
>PF14850 Pro_dh-DNA_bdg: DNA-binding domain of Proline dehydrogenase; PDB: 2FZM_A 3E2Q_A 3E2S_A 2FZN_A 1K87_A 1TJ2_A 3ITG_B 3E2R_A 1TJ1_A 1TIW_A ....
Probab=32.31 E-value=69 Score=22.99 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=23.0
Q ss_pred HHHHHHHHHHc--CCCCCccHHHHHHHHHHHhhccCCCCCCCcccc
Q 048587 11 CAFAVQALLAC--NLTDEIGPILMKAHDFLKTSQVTDNPPGDFESM 54 (150)
Q Consensus 11 Tala~~AL~~a--G~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~ 54 (150)
=++++|-|+|+ -. |+ ....+-|++-++.. |+|..+
T Consensus 16 EGvaLMcLAEALLRV-PD-----~~T~d~LI~DKl~~---~dW~~H 52 (114)
T PF14850_consen 16 EGVALMCLAEALLRV-PD-----AATADALIRDKLGS---GDWKSH 52 (114)
T ss_dssp HHHHHHHHHHHHHTS-SS-----HHHHHHHHHHTTTT---T-HHHH
T ss_pred HHHHHHHHHHHHHcC-CC-----HHHHHHHHHHHHhc---CChhhc
Confidence 36788888887 44 34 34457777777775 899754
No 103
>PLN02567 alpha,alpha-trehalase
Probab=30.52 E-value=3.6e+02 Score=24.43 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCC
Q 048587 8 TWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTD 45 (150)
Q Consensus 8 ~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d 45 (150)
.|||-+++.+|+.+|+. +.++..++=|+..|.+.
T Consensus 155 yWDSy~i~~GLl~s~~~----~~A~~mi~Nf~~~i~~~ 188 (554)
T PLN02567 155 YWDSYWVIRGLLASKMY----ETAKGVVENLLYLVDTY 188 (554)
T ss_pred hHHHHHHHHHHHhCCCH----HHHHHHHHHHHHHHHHc
Confidence 59999999999999984 45666666666666653
No 104
>PF12899 Glyco_hydro_100: Alkaline and neutral invertase; InterPro: IPR024746 This is a family of endo-alpha-N-acetylgalactosaminidases. This is a unique enzyme that hydrolyses core 1-type O-glycan from glycoproteins. The proteins are produced in the gut-flora bacteria from Actinobacteria and Firmicutes [].; GO: 0033926 glycopeptide alpha-N-acetylgalactosaminidase activity
Probab=30.06 E-value=1.2e+02 Score=26.57 Aligned_cols=96 Identities=11% Similarity=0.141 Sum_probs=54.7
Q ss_pred cCCCCCccHHHHHHHHHHHhhcc------C--------CCCCCCcccccCCCCCCccccCCCCCC-CCcccchHHHHHHH
Q 048587 21 CNLTDEIGPILMKAHDFLKTSQV------T--------DNPPGDFESMFRHTSKGGWTFSNKDHG-WPVSDCTAEALLCC 85 (150)
Q Consensus 21 aG~~~~~~~~i~ra~~wL~~~Q~------~--------d~~~G~~~~~~~~~~~GgW~fs~~~~~-~pd~d~Ta~al~aL 85 (150)
+|+.. .+.-++.++++++.-. + ++ ..|.. +.++.+.-+++|+.|.| ||.+ ...-+.|+
T Consensus 302 sgLat--~~qa~~I~~lIe~~~~~L~g~mPlki~yPale~--~eWri-~tg~dpKN~PwsYHNGG~WP~L--lW~~~aA~ 374 (436)
T PF12899_consen 302 SGLAT--PEQAEAIMDLIEERWEDLVGPMPLKICYPALEG--EEWRI-YTGCDPKNTPWSYHNGGSWPVL--LWFLTAAL 374 (436)
T ss_pred hcCCC--HHHHHHHHHHHHHHHhhhccccchhhccCCCCC--CCCcc-ccCcCcCccccccccCCCcHHH--HHHHHHHH
Confidence 35544 3566777788766521 1 10 23432 34456677788887765 7866 44444555
Q ss_pred HHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhh
Q 048587 86 LYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRRAPSWLE 135 (150)
Q Consensus 86 ~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~~~~~~~~l~ 135 (150)
+..+ ..+..++++. ....|..+.+|++|=..++..++.
T Consensus 375 ik~g-----------r~~lA~~al~-~a~~rL~~dewpEyydGktGrp~G 412 (436)
T PF12899_consen 375 IKMG-----------RPELAERALE-AAENRLSKDEWPEYYDGKTGRPMG 412 (436)
T ss_pred HHcC-----------CHHHHHHHHH-HHHHhhcccCCcccccCCCCCccc
Confidence 5544 2334444433 355666777899886666655544
No 105
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=28.22 E-value=61 Score=24.27 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=19.5
Q ss_pred HHHHHHcCCCCCccHHHHHHHHHHHhhc
Q 048587 15 VQALLACNLTDEIGPILMKAHDFLKTSQ 42 (150)
Q Consensus 15 ~~AL~~aG~~~~~~~~i~ra~~wL~~~Q 42 (150)
..-|.++|.. ..-|.+|++||.+-.
T Consensus 27 ~~~L~~aGF~---~~eI~~Al~WL~~L~ 51 (155)
T PF04361_consen 27 TRELSAAGFE---DEEINKALDWLEGLA 51 (155)
T ss_pred HHHHHHcCCC---HHHHHHHHHHHHHHH
Confidence 3457788987 567999999998643
No 106
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=28.15 E-value=3e+02 Score=21.84 Aligned_cols=21 Identities=19% Similarity=0.025 Sum_probs=15.6
Q ss_pred CCccHHHHHHHHHHHhhccCC
Q 048587 25 DEIGPILMKAHDFLKTSQVTD 45 (150)
Q Consensus 25 ~~~~~~i~ra~~wL~~~Q~~d 45 (150)
+++.+.+++++++++++...+
T Consensus 158 ~~~l~~A~~~~~~~~~~~~~~ 178 (321)
T cd04791 158 SRYLELAEEALDKELARAVVD 178 (321)
T ss_pred HHHHHHHHHHHHHHHHhhccC
Confidence 446778888999988876553
No 107
>PLN02340 endoglucanase
Probab=27.84 E-value=2.4e+02 Score=25.97 Aligned_cols=96 Identities=15% Similarity=0.119 Sum_probs=46.1
Q ss_pred CCccHHHHHHHHHHHhhccCC---CCCCCcccc--cCC------CCCCccccCCCCC---CCCcccchHHHHHHHHHhcC
Q 048587 25 DEIGPILMKAHDFLKTSQVTD---NPPGDFESM--FRH------TSKGGWTFSNKDH---GWPVSDCTAEALLCCLYFSM 90 (150)
Q Consensus 25 ~~~~~~i~ra~~wL~~~Q~~d---~~~G~~~~~--~~~------~~~GgW~fs~~~~---~~pd~d~Ta~al~aL~~~~~ 90 (150)
.+|.+++++++.|...+..-. +.++.|... ..+ .-.|||- .-.++ +.|..-.+..-+.+......
T Consensus 29 ~nY~~aL~~Sl~Fy~aQRsG~Lp~~~~~~WR~ds~l~Dg~~~~~DlsGGwy-DAGD~vKf~~p~a~t~t~L~w~~~ef~~ 107 (614)
T PLN02340 29 FNYGGALDKTLLFFEAQRSGKLPANQRVKWRGDSGLKDGFLQGVDLVGGYY-DAGDHVKFGLPMAFAVTMLSWGAVDFRK 107 (614)
T ss_pred CcHHHHHHHHHHHHHHhcCcCCCccCCCcccccccCCCcccccCCCCCCce-eCCCcceecchhHHHHHHHHHHHHHHHH
Confidence 469999999999998766432 223445321 111 1246663 11111 11211112211122222211
Q ss_pred CCCcccCCCCCHHHHHHHHHHHHhcccCCCC
Q 048587 91 LPPEIVGEKMEPERYYDAVNCIISMQSQTGG 121 (150)
Q Consensus 91 ~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGG 121 (150)
...+.-+.+...+.|+=+.|||+.||.+++.
T Consensus 108 ~~~~~~~~~~~ldeirw~~Dyllk~~~~~~~ 138 (614)
T PLN02340 108 EITALNQMQRTLWAIRWGTDYFIKAHTQPNV 138 (614)
T ss_pred HhhhcCChHHHHHHHHHHHHHHHHhcCCCCe
Confidence 1111112233456788899999999877543
No 108
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=27.62 E-value=1.3e+02 Score=17.47 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=20.6
Q ss_pred cchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHh
Q 048587 76 DCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIIS 114 (150)
Q Consensus 76 d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~ 114 (150)
|....++.||..++- ....+++++.=+..
T Consensus 1 d~~~d~~~AL~~LGy----------~~~e~~~av~~~~~ 29 (47)
T PF07499_consen 1 DALEDALEALISLGY----------SKAEAQKAVSKLLE 29 (47)
T ss_dssp HHHHHHHHHHHHTTS-----------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCC----------CHHHHHHHHHHhhc
Confidence 446678899999873 56677777777665
No 109
>PLN02613 endoglucanase
Probab=26.91 E-value=2.6e+02 Score=24.98 Aligned_cols=95 Identities=11% Similarity=0.065 Sum_probs=46.3
Q ss_pred CCccHHHHHHHHHHHhhccCC---CCCCCcccc--cCC------CCCCccccCCCCCC-CCcccchHHHHHHH----HHh
Q 048587 25 DEIGPILMKAHDFLKTSQVTD---NPPGDFESM--FRH------TSKGGWTFSNKDHG-WPVSDCTAEALLCC----LYF 88 (150)
Q Consensus 25 ~~~~~~i~ra~~wL~~~Q~~d---~~~G~~~~~--~~~------~~~GgW~fs~~~~~-~pd~d~Ta~al~aL----~~~ 88 (150)
..|.+.+++++.|...+..-. +.++.|... ..+ .-.|||- .-.++. +. -..+.++.-| ...
T Consensus 25 ~~Y~~aL~~sl~Fy~~QRsG~lp~~~~~~Wr~ds~l~Dg~~~~~DlsGGwy-DAGD~~Ky~--~p~a~s~t~L~w~~~e~ 101 (498)
T PLN02613 25 PDYGDALNKSILFFEGQRSGKLPTNQRVKWRADSALSDGKPENVNLTGGYY-DAGDNVKFG--WPMAFTVTLLSWAAIEY 101 (498)
T ss_pred chHHHHHHHHHHHHHHhcCcCCCcccCCCCcccccCCCcccCcccCCCCce-eCCCCceec--CchHHHHHHHHHHHHHh
Confidence 358999999999998765432 112445321 111 1256663 111111 11 1122222222 222
Q ss_pred cCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCc
Q 048587 89 SMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGV 122 (150)
Q Consensus 89 ~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW 122 (150)
.....+.-+.+...+.|+=+.+||+.||..+|++
T Consensus 102 ~~~~~s~~~~~d~ldeikw~lD~llkm~~~~~~~ 135 (498)
T PLN02613 102 QNEISSVNQLGYLRSAIRWGTDFILRAHTSPTTL 135 (498)
T ss_pred HHHHhhcCCchHHHHHHHHHHHHHHHhccCCCeE
Confidence 1111111123344567888999999998775544
No 110
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.08 E-value=3e+02 Score=25.02 Aligned_cols=89 Identities=12% Similarity=0.099 Sum_probs=55.4
Q ss_pred HHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHHHhcCCCCcccC
Q 048587 18 LLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVG 97 (150)
Q Consensus 18 L~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g 97 (150)
|..-| +++..+.|.+.++-+.+.|..|.+.|+|.. ++.+.-.|+-=-.+| ..-|-+.-+.++++... ..|
T Consensus 79 l~~~~-dp~Lekr~D~vi~~~a~~QdedGYl~~~~q--~~~pe~Rw~nlr~~H---elY~aghLieg~va~~q----aTG 148 (589)
T COG3533 79 LANKG-DPELEKRIDEVVEELARAQDEDGYLGGWFQ--ADFPEERWGNLRPNH---ELYCAGHLIEGGVAAHQ----ATG 148 (589)
T ss_pred HhcCC-CHHHHHHHHHHHHHHHHhhccCCcccceee--ccCchhhhhccccch---HHHHhHHHHhhhhHHHH----hhC
Confidence 33334 344568888999999999998755555542 233334555211122 24466677777776542 346
Q ss_pred CCCCHHHHHHHHHHHHhcc
Q 048587 98 EKMEPERYYDAVNCIISMQ 116 (150)
Q Consensus 98 ~~~~~~~i~rav~wL~~~Q 116 (150)
++.--+.+.|=.+||.+.=
T Consensus 149 kr~lldV~~rlADhi~tvf 167 (589)
T COG3533 149 KRRLLDVVCRLADHIATVF 167 (589)
T ss_pred cchHHHHHHHHHHhhhhhc
Confidence 6667788888899998753
No 111
>PF08169 RBB1NT: RBB1NT (NUC162) domain; InterPro: IPR012603 This domain is found N-terminal to the ARID/BRIGHT domain in DNA-binding proteins of the Retinoblastoma-binding protein 1 family [].; PDB: 2YRV_A.
Probab=24.65 E-value=64 Score=22.45 Aligned_cols=18 Identities=56% Similarity=0.665 Sum_probs=12.0
Q ss_pred cHHHHHHHHHHHhhccCC
Q 048587 28 GPILMKAHDFLKTSQVTD 45 (150)
Q Consensus 28 ~~~i~ra~~wL~~~Q~~d 45 (150)
.+.+++|+.||...+.++
T Consensus 78 k~al~~A~~Fl~~~~vP~ 95 (96)
T PF08169_consen 78 KPALDKASTFLKTGVVPD 95 (96)
T ss_dssp -HHHHHHHHHHHS----T
T ss_pred hHHHHHHHHHHhcCCCCC
Confidence 578999999999988875
No 112
>PLN02973 beta-fructofuranosidase
Probab=24.41 E-value=3.9e+02 Score=24.36 Aligned_cols=38 Identities=11% Similarity=0.098 Sum_probs=27.4
Q ss_pred CcccchHHHHHHHHHhcCCCCcccCCC--CCHHHHHHHHHHHHh
Q 048587 73 PVSDCTAEALLCCLYFSMLPPEIVGEK--MEPERYYDAVNCIIS 114 (150)
Q Consensus 73 pd~d~Ta~al~aL~~~~~~~~~~~g~~--~~~~~i~rav~wL~~ 114 (150)
.-||.+-+=+++|.+..+. .|+. ...+.++||+.||+.
T Consensus 222 ~pVDS~LWWIIllraY~k~----TgD~s~~e~pevQrgi~lil~ 261 (571)
T PLN02973 222 APVDSGFWWIILLRAYTKS----TGDSSLADMPECQKGIRLILS 261 (571)
T ss_pred cccchhhHHHHHHHHHHHh----ccchhhhhcHHHHHHHHHHHH
Confidence 3488888888888776542 1222 346889999999998
No 113
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=23.24 E-value=3.8e+02 Score=21.13 Aligned_cols=85 Identities=16% Similarity=0.101 Sum_probs=44.3
Q ss_pred CCCCCccHHHHHHHHHHHhhccCCCCCCCccc-ccCCCCCCccccCCCCCCCCcccchHHHHHHHHHhcCCCCcccCCCC
Q 048587 22 NLTDEIGPILMKAHDFLKTSQVTDNPPGDFES-MFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKM 100 (150)
Q Consensus 22 G~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~-~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~ 100 (150)
..++.+.+.+.+.+++|...+..+.....|.. .......-||. || .+-.+.+|..+... ...+.
T Consensus 115 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~-----HG------~~Gi~~~l~~~~~~----~~~~~ 179 (343)
T cd04434 115 FGEEIFLELIRKILDYLLELGKNGDGKIRWPMYFPEGRVNLGLA-----HG------LAGILLALLLLYKK----TVDKS 179 (343)
T ss_pred cCCcCHHHHHHHHHHHHHHhhhhccCCCceeeeccCCccccchh-----hh------hHHHHHHHHHHHHh----cCChh
Confidence 33455678899999999998776421111110 00111112222 22 44455555555421 11223
Q ss_pred CHHHHHHHHHHHHhcccCCCC
Q 048587 101 EPERYYDAVNCIISMQSQTGG 121 (150)
Q Consensus 101 ~~~~i~rav~wL~~~Qn~dGG 121 (150)
..+.++.++.++...+..+++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~ 200 (343)
T cd04434 180 LEALIKALLKYERRLQDDSGG 200 (343)
T ss_pred HHHHHHHHHHHHHHccCCCCC
Confidence 456677778888888776654
No 114
>PLN02171 endoglucanase
Probab=22.97 E-value=5.9e+02 Score=23.54 Aligned_cols=111 Identities=14% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCCC-------ccHHHHHHHHHHHhhccCCCCCCCcccccCCCC-----------CCccccCCCCCC-
Q 048587 11 CAFAVQALLACNLTDE-------IGPILMKAHDFLKTSQVTDNPPGDFESMFRHTS-----------KGGWTFSNKDHG- 71 (150)
Q Consensus 11 Tala~~AL~~aG~~~~-------~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~-----------~GgW~fs~~~~~- 71 (150)
..++++.|+.+-.... |.+.+++++.|...+..-..+......++++.. .|||- .-.++.
T Consensus 8 ~~~~~~~~~~~~~s~~~~~~~~~Y~~al~~sl~Fy~~QRsG~lp~~~~~~Wr~~s~~~Dg~~~~vDlsGGwy-DAGD~vK 86 (629)
T PLN02171 8 ILLALLLLAAAQLCFPVAFGGHDYGQALSKSILFFEAQRSGVLPPNQRVTWRANSGLFDGKASGVDLVGGYY-DAGDNVK 86 (629)
T ss_pred HHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHccCCCCCcccCCCCccCCCCCCCCcCcccCCCCce-eCCCCce
Q ss_pred --CCcccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCc
Q 048587 72 --WPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGV 122 (150)
Q Consensus 72 --~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW 122 (150)
.|..-.+..-+.++........+.-..+-..+.++=+.|||+.||..+|+.
T Consensus 87 f~~p~a~s~t~L~w~~~e~~~~~~~~g~~~~~Ldeikw~~Dyllk~~~~~~~~ 139 (629)
T PLN02171 87 FGLPMAFTVTMMSWSIIEYGKQMAAAGELGHAMDAVKWGTDYFIKAHPEPNVL 139 (629)
T ss_pred eccchHHHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHHHHhccCCCeE
No 115
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=22.83 E-value=67 Score=27.38 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHhcccCCCC
Q 048587 101 EPERYYDAVNCIISMQSQTGG 121 (150)
Q Consensus 101 ~~~~i~rav~wL~~~Qn~dGG 121 (150)
-.+.++=+++||++||.++|+
T Consensus 96 llde~kwg~D~llkm~~~~~~ 116 (444)
T PF00759_consen 96 LLDEAKWGLDWLLKMQDSDGT 116 (444)
T ss_dssp HHHHHHHHHHHHHHTBSCTTE
T ss_pred HHHHHHHHHHHHHhccCCCCc
Confidence 456678899999999999554
No 116
>PLN02909 Endoglucanase
Probab=22.62 E-value=1.7e+02 Score=26.09 Aligned_cols=67 Identities=12% Similarity=0.126 Sum_probs=37.8
Q ss_pred HcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCC--CCCccccC----------CCCCCCCcccchHHHHHHHHH
Q 048587 20 ACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHT--SKGGWTFS----------NKDHGWPVSDCTAEALLCCLY 87 (150)
Q Consensus 20 ~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~--~~GgW~fs----------~~~~~~pd~d~Ta~al~aL~~ 87 (150)
.+|..+++-+.|+=.++||+++|..+ |....+-.+. ....|.=. ..+...|-+|.|++..-||.+
T Consensus 115 ~~g~~~d~ldeikw~~D~llk~~~~~---~~~y~qVg~~~~Dh~~W~~Pe~~~~~R~~~~i~~~~pgtd~a~~~AAAlA~ 191 (486)
T PLN02909 115 ATGELENVRAAIRWGTDYFLKAASRK---NRLYVQVGDPNLDHQCWVRPENMKTPRTVLEIDEKTPGTEIAAETAAAMAA 191 (486)
T ss_pred hcCChHHHHHHHHHHHHHHHHhccCC---CeEEEEeCCCCCCcccCCChhhccCCceeEecCCCCCCcHHHHHHHHHHHH
Confidence 34555566777888999999999875 5554332111 12234210 011113567777777666666
Q ss_pred hc
Q 048587 88 FS 89 (150)
Q Consensus 88 ~~ 89 (150)
+.
T Consensus 192 as 193 (486)
T PLN02909 192 SS 193 (486)
T ss_pred HH
Confidence 54
No 117
>PLN02703 beta-fructofuranosidase
Probab=22.10 E-value=2e+02 Score=26.40 Aligned_cols=67 Identities=13% Similarity=0.210 Sum_probs=38.5
Q ss_pred cCCCCCCccccCCCCCC-CCcccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchh
Q 048587 55 FRHTSKGGWTFSNKDHG-WPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRRAPSW 133 (150)
Q Consensus 55 ~~~~~~GgW~fs~~~~~-~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~~~~~~~~ 133 (150)
+.++.|.-+++|+.|.| ||.+ -..-..|++.+++ .+..+|++.-+. .++.-.+|++|=..++..+
T Consensus 486 ~TG~DpKN~PWSYHNGGsWP~L--lWf~~aA~iK~Gr-----------~~lA~ral~~ae-~rl~~d~WpEYyDGktGr~ 551 (618)
T PLN02703 486 ITGSDPKNTPWSYHNGGAWPTL--LWQLTVASIKMGR-----------PEIAEKAVELAE-RRISLDKWPEYYDTKRARF 551 (618)
T ss_pred eeCcCCCCCCccccCCCcchHH--HHHHHHHHHHcCC-----------HHHHHHHHHHHH-HHhhhccChhhccCCCCcC
Confidence 34455677888888876 7743 3333344555442 344455555444 3566679988865555554
Q ss_pred hh
Q 048587 134 LE 135 (150)
Q Consensus 134 l~ 135 (150)
+.
T Consensus 552 iG 553 (618)
T PLN02703 552 IG 553 (618)
T ss_pred cc
Confidence 43
No 118
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=21.89 E-value=5.2e+02 Score=22.22 Aligned_cols=78 Identities=15% Similarity=0.112 Sum_probs=50.7
Q ss_pred ccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHHHhcCCCCcccCCCCCHHHHH
Q 048587 27 IGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYY 106 (150)
Q Consensus 27 ~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~ 106 (150)
+...++.-++=|++.|..+ |-|..--.+.+++ .|+.++.||.-.-||+..-+.. .. .+...+.++
T Consensus 230 l~~~l~d~v~al~r~Qde~---GlW~tiLDd~~~~---------sy~EsSaSa~faYallkgi~~G--~l-~~~~~~~~~ 294 (357)
T COG4225 230 LLNVLRDLVDALIRYQDES---GLWHTILDDGRPG---------SYLESSASAGFAYALLKGINLG--IL-DPEYAPVAE 294 (357)
T ss_pred HHHHHHHHHHHHHHhhccc---cchhhhhccCCCC---------CchhhhHHHHHHHHHHHHHhcC--CC-CchhhHHHH
Confidence 5667888888999999965 8885332222233 2567778888888888732210 00 122457899
Q ss_pred HHHHHHHhcccCC
Q 048587 107 DAVNCIISMQSQT 119 (150)
Q Consensus 107 rav~wL~~~Qn~d 119 (150)
||.+=|+..=.++
T Consensus 295 kA~~aLl~~i~~~ 307 (357)
T COG4225 295 KALDALLGHIDEE 307 (357)
T ss_pred HHHHHHHhhcccc
Confidence 9999999876554
No 119
>PF09282 Mago-bind: Mago binding; InterPro: IPR015362 Members of this family adopt a structure consisting of a small globular all-beta-domain, with a three-stranded beta-sheet and a contiguous beta-hairpin. They bind to Mago alpha-helices via extensive electrostatic interactions and at a beta2-beta3 loop via hydrophobic interactions []. ; GO: 0005515 protein binding; PDB: 1RK8_C.
Probab=21.78 E-value=15 Score=19.62 Aligned_cols=14 Identities=21% Similarity=0.095 Sum_probs=7.1
Q ss_pred HHHhcccCCCCccc
Q 048587 111 CIISMQSQTGGVPA 124 (150)
Q Consensus 111 wL~~~Qn~dGGW~~ 124 (150)
++-+.|.+||.|.-
T Consensus 4 ~I~~s~RpDGt~RK 17 (27)
T PF09282_consen 4 IIPASQRPDGTWRK 17 (27)
T ss_dssp EE--EE-TTS-EE-
T ss_pred CcCcccCCCCCccc
Confidence 34578999999964
No 120
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=21.64 E-value=3.4e+02 Score=25.19 Aligned_cols=81 Identities=14% Similarity=0.101 Sum_probs=41.4
Q ss_pred CCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHHHhcCCCCcccCCCCCHHH
Q 048587 25 DEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPER 104 (150)
Q Consensus 25 ~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~ 104 (150)
+.+.+.+.+++++|.+.+..++ .+.| .......-||+ | .++-.+.+|..+... .+.+...+.
T Consensus 606 ~~~l~~a~~~~~~l~~~~~~~~-~~~~--~~~~~~~~G~a-----H------G~sGi~~aL~~l~~~----~~d~~~~~~ 667 (825)
T cd04792 606 ERFLDLALKCGDHLLENASNED-GGIG--PAEQPNLTGFA-----H------GASGIAWALLRLYKV----TGDSRYLKL 667 (825)
T ss_pred hHHHHHHHHHHHHHHHhhhhcc-CCcc--ccccccccccc-----c------cHHHHHHHHHHHHHH----cCcHHHHHH
Confidence 3466778889999988766541 1222 00111122332 2 244555556555421 123334556
Q ss_pred HHHHHHHHHhcccC-CCCcc
Q 048587 105 YYDAVNCIISMQSQ-TGGVP 123 (150)
Q Consensus 105 i~rav~wL~~~Qn~-dGGW~ 123 (150)
+++++++..+...+ .++|.
T Consensus 668 a~~~l~~~~~~~~~~~~~w~ 687 (825)
T cd04792 668 AHKALKYERRLFSEEGWNWP 687 (825)
T ss_pred HHHHHHHHHHhcCHhhcCCC
Confidence 77777777665433 35664
No 121
>PHA01516 hypothetical protein
Probab=21.63 E-value=66 Score=21.75 Aligned_cols=37 Identities=30% Similarity=0.376 Sum_probs=29.7
Q ss_pred cCCCchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCC
Q 048587 3 SFGSQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDN 46 (150)
Q Consensus 3 ~~~s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~ 46 (150)
..|.+.||-++.-.-|.+.|++ .|=++|--.+|.-|+
T Consensus 52 ~~glqm~de~ltd~dleem~lt-------drwvdwy~e~~~~d~ 88 (98)
T PHA01516 52 ANGLQMWDESLTDQDLEEMELT-------DRWVDWYSECQCYDD 88 (98)
T ss_pred ccchhhhhhhcchhHHHHccch-------hhhhhhhhhhccccC
Confidence 3488999999999999999987 456788888887664
No 122
>PLN03009 cellulase
Probab=20.07 E-value=6.3e+02 Score=22.52 Aligned_cols=27 Identities=11% Similarity=-0.034 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHHHhcccCCCCcccc
Q 048587 99 KMEPERYYDAVNCIISMQSQTGGVPAW 125 (150)
Q Consensus 99 ~~~~~~i~rav~wL~~~Qn~dGGW~~~ 125 (150)
+...+.|+=+++||+.||..+|+.-..
T Consensus 113 ~diLdeikw~~D~llkm~~~~~~~y~q 139 (495)
T PLN03009 113 RNSLVAIRWATDYLLKTVSQPNRIFVQ 139 (495)
T ss_pred HHHHHHHHHHHHHHHHcccCcCeEEEE
Confidence 334566777899999999888776443
Done!