Query 048587
Match_columns 150
No_of_seqs 126 out of 1059
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 19:03:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048587.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048587hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w6k_A Lanosterol synthase; cy 100.0 2E-31 6.7E-36 239.1 12.4 148 1-150 378-528 (732)
2 2sqc_A Squalene-hopene cyclase 99.9 2.8E-28 9.7E-33 215.3 10.7 133 1-141 304-436 (631)
3 2sqc_A Squalene-hopene cyclase 99.6 4.3E-16 1.5E-20 137.6 10.4 106 6-122 373-485 (631)
4 1r76_A Pectate lyase; A-helica 99.6 3.9E-15 1.4E-19 125.4 8.6 107 29-141 81-212 (408)
5 1gxm_A Pectate lyase; mechanis 99.6 2E-15 6.8E-20 124.2 5.4 97 34-141 36-134 (332)
6 1w6k_A Lanosterol synthase; cy 99.3 2E-12 6.7E-17 116.1 8.5 103 6-124 584-689 (732)
7 1gxm_A Pectate lyase; mechanis 99.3 2.3E-12 8E-17 106.0 4.2 107 6-122 71-188 (332)
8 2h6f_B Protein farnesyltransfe 99.2 1.9E-11 6.4E-16 104.1 5.4 93 6-125 148-242 (437)
9 1r76_A Pectate lyase; A-helica 99.2 1.8E-11 6.1E-16 103.2 4.8 111 6-126 146-269 (408)
10 2h6f_B Protein farnesyltransfe 99.1 1.4E-10 4.9E-15 98.7 8.1 96 6-125 99-194 (437)
11 1n4q_B Geranyltransferase type 99.1 2.5E-10 8.5E-15 95.6 7.4 95 6-126 120-214 (377)
12 3dss_B Geranylgeranyl transfer 99.0 5.6E-10 1.9E-14 91.9 8.1 93 6-126 93-185 (331)
13 3q7a_B Farnesyltransferase bet 98.9 3E-09 1E-13 92.1 9.2 93 5-124 137-236 (520)
14 3dss_B Geranylgeranyl transfer 98.9 1.5E-09 5E-14 89.4 6.6 91 7-125 142-232 (331)
15 1qqf_A Protein (complement C3D 98.9 2.8E-09 9.7E-14 84.7 6.6 104 5-118 64-173 (277)
16 2wy7_A Complement C3D fragment 98.8 4.6E-09 1.6E-13 84.8 6.8 104 5-118 80-189 (310)
17 1hzf_A Complement factor C4A; 98.8 1.7E-08 5.8E-13 83.5 9.3 93 12-127 66-166 (367)
18 1qqf_A Protein (complement C3D 98.7 8.2E-08 2.8E-12 76.1 9.7 77 28-127 37-114 (277)
19 2wy7_A Complement C3D fragment 98.7 1.2E-07 4.2E-12 76.4 9.7 78 28-128 53-131 (310)
20 1hzf_A Complement factor C4A; 98.6 6.9E-08 2.4E-12 79.9 8.0 101 6-115 118-226 (367)
21 1n4q_B Geranyltransferase type 98.5 2.6E-07 8.8E-12 77.3 7.4 110 5-125 45-164 (377)
22 3q7a_B Farnesyltransferase bet 98.5 5.5E-07 1.9E-11 78.0 9.7 101 5-124 86-188 (520)
23 2bb6_A TCII, TC II, transcobal 98.4 8.7E-07 3E-11 74.9 8.5 90 5-123 133-226 (414)
24 4acq_A Alpha-2-macroglobulin; 98.4 9.1E-07 3.1E-11 84.5 8.8 92 6-115 1014-1108(1451)
25 2bb6_A TCII, TC II, transcobal 98.4 9.8E-07 3.3E-11 74.6 8.0 85 6-123 176-269 (414)
26 4acq_A Alpha-2-macroglobulin; 98.2 3.5E-06 1.2E-10 80.5 7.8 80 29-127 983-1062(1451)
27 2hr0_B Complement C3 alpha' ch 98.2 5.4E-06 1.8E-10 75.8 8.6 103 6-118 326-434 (915)
28 2pmv_A Gastric intrinsic facto 98.0 3.7E-06 1.3E-10 70.7 4.5 84 7-123 151-245 (399)
29 2pn5_A TEP1R, thioester-contai 98.0 1.8E-05 6.3E-10 74.6 8.7 75 28-124 871-945 (1325)
30 2pn5_A TEP1R, thioester-contai 97.9 8.4E-06 2.9E-10 76.9 5.4 101 5-123 898-1005(1325)
31 2hr0_B Complement C3 alpha' ch 97.9 3.5E-05 1.2E-09 70.5 8.7 75 29-126 299-374 (915)
32 2pmv_A Gastric intrinsic facto 97.6 0.00017 6E-09 60.6 8.1 87 6-123 112-203 (399)
33 3dra_B Geranylgeranyltransfera 97.1 0.0011 3.9E-08 55.5 7.2 114 5-126 91-214 (390)
34 4fxk_B Complement C4-A alpha c 96.8 0.011 3.8E-07 52.8 11.7 98 7-127 338-443 (767)
35 3dra_B Geranylgeranyltransfera 96.8 0.002 7E-08 53.9 6.5 61 30-117 192-252 (390)
36 4fxk_B Complement C4-A alpha c 96.7 0.0086 2.9E-07 53.5 10.2 106 6-124 509-622 (767)
37 2b39_A C3; thioester, immune d 96.7 0.0091 3.1E-07 57.7 11.0 100 6-115 1073-1178(1661)
38 3s9v_A Abietadiene synthase, c 96.7 0.0009 3.1E-08 60.6 3.5 83 5-115 53-135 (785)
39 3pya_A ENT-copalyl diphosphate 96.6 0.0019 6.4E-08 58.1 5.1 103 5-140 31-133 (727)
40 3p5p_A Taxadiene synthase; cla 96.6 0.0013 4.5E-08 59.4 3.6 103 5-140 30-134 (764)
41 3prx_B Cobra venom factor; imm 96.6 0.00037 1.3E-08 67.5 0.0 99 6-115 1057-1162(1642)
42 3sdr_A Alpha-bisabolene syntha 96.5 0.0016 5.4E-08 59.2 4.0 105 5-140 80-185 (817)
43 3cu7_A Complement C5; Mg domai 96.1 0.016 5.4E-07 56.1 8.3 72 31-125 1049-1121(1676)
44 2b39_A C3; thioester, immune d 95.9 0.024 8.3E-07 54.8 8.7 73 30-125 1047-1120(1661)
45 3cu7_A Complement C5; Mg domai 95.7 0.024 8.3E-07 54.8 8.0 100 8-125 1185-1287(1676)
46 3prx_B Cobra venom factor; imm 95.2 0.0032 1.1E-07 61.0 0.0 75 30-126 1031-1106(1642)
47 1ulv_A Glucodextranase; GH fam 92.5 0.28 9.7E-06 45.6 7.3 89 8-116 331-421 (1020)
48 3gt5_A N-acetylglucosamine 2-e 92.3 0.21 7.3E-06 41.0 5.6 102 7-127 50-162 (402)
49 1lf6_A Glucoamylase; (alpha/al 91.7 0.29 9.9E-06 43.3 6.2 85 9-116 343-429 (684)
50 2gz6_A N-acetyl-D-glucosamine 91.3 0.13 4.3E-06 41.6 3.2 103 7-123 51-159 (388)
51 3sdr_A Alpha-bisabolene syntha 90.6 0.046 1.6E-06 49.7 -0.1 42 73-124 81-122 (817)
52 3s9v_A Abietadiene synthase, c 90.3 0.043 1.5E-06 49.7 -0.5 42 73-124 54-95 (785)
53 2zbl_A Putative isomerase; N-a 90.2 0.46 1.6E-05 39.2 5.7 100 6-123 48-155 (421)
54 3p5p_A Taxadiene synthase; cla 90.0 0.049 1.7E-06 49.2 -0.4 44 73-124 31-74 (764)
55 3pya_A ENT-copalyl diphosphate 89.7 0.055 1.9E-06 48.6 -0.4 41 73-125 32-72 (727)
56 3k11_A Putative glycosyl hydro 87.4 0.47 1.6E-05 40.2 3.9 112 9-137 82-204 (445)
57 1nc5_A Hypothetical protein YT 87.0 2.2 7.4E-05 34.7 7.6 101 7-120 209-322 (373)
58 1lf6_A Glucoamylase; (alpha/al 86.5 1.2 4.3E-05 39.2 6.2 82 25-123 292-379 (684)
59 2ahf_A Unsaturated glucuronyl 85.8 0.64 2.2E-05 38.4 3.8 106 8-121 147-262 (377)
60 3pmm_A Putative cytoplasmic pr 85.3 4.5 0.00015 33.1 8.7 81 27-124 261-341 (382)
61 2vn4_A Glucoamylase; hydrolase 85.0 3.1 0.00011 36.3 8.0 114 8-128 52-181 (599)
62 1fp3_A N-acyl-D-glucosamine 2- 84.1 1.3 4.3E-05 36.0 4.8 101 6-124 53-168 (402)
63 3k11_A Putative glycosyl hydro 81.8 3 0.0001 35.2 6.3 80 27-122 292-371 (445)
64 1wgn_A UBAP1, ubiquitin associ 80.6 1.1 3.8E-05 27.8 2.4 17 104-120 46-62 (63)
65 1vg5_A RSGI RUH-014, rhomboid 80.5 1.9 6.5E-05 27.5 3.6 29 11-45 43-71 (73)
66 1wgn_A UBAP1, ubiquitin associ 79.5 2.2 7.7E-05 26.4 3.5 14 31-44 47-60 (63)
67 1wji_A Tudor domain containing 77.9 2.4 8.3E-05 26.1 3.4 28 12-45 24-51 (63)
68 2dna_A Unnamed protein product 77.4 1.8 6.1E-05 27.2 2.7 30 78-120 34-63 (67)
69 2fba_A Glucoamylase Glu1; (alp 77.3 3.8 0.00013 34.9 5.6 73 8-87 68-156 (492)
70 2dna_A Unnamed protein product 76.7 3.1 0.00011 26.1 3.7 28 11-44 34-61 (67)
71 2knz_A Ubiquilin-4; cytoplasm, 76.0 2.8 9.5E-05 24.8 3.2 26 11-42 26-51 (53)
72 1veg_A NEDD8 ultimate buster-1 72.0 3.6 0.00012 26.9 3.2 13 31-43 57-69 (83)
73 3eu8_A Putative glucoamylase; 71.0 7.6 0.00026 32.7 5.8 101 8-115 64-169 (430)
74 1gai_A Glucoamylase-471; hydro 71.0 16 0.00055 30.9 7.9 106 8-126 53-178 (472)
75 1wiv_A UBP14, ubiquitin-specif 69.4 4.4 0.00015 25.6 3.2 27 12-44 44-70 (73)
76 2gz6_A N-acetyl-D-glucosamine 68.7 6.2 0.00021 31.5 4.7 102 6-124 112-218 (388)
77 2zzr_A Unsaturated glucuronyl 68.6 7.5 0.00026 32.2 5.3 106 9-126 173-291 (397)
78 2cpw_A CBL-interacting protein 67.0 7.1 0.00024 23.9 3.7 28 12-44 34-61 (64)
79 1vej_A Riken cDNA 4931431F19; 66.9 6.2 0.00021 25.2 3.5 26 13-44 46-71 (74)
80 2jy5_A Ubiquilin-1; UBA, alter 65.3 5.8 0.0002 23.3 2.9 23 13-41 29-51 (52)
81 2crn_A Ubash3A protein; compac 65.2 6.4 0.00022 24.2 3.2 29 11-44 23-51 (64)
82 2bwb_A Ubiquitin-like protein 64.9 5.7 0.0002 22.7 2.8 24 11-40 22-45 (46)
83 3pmm_A Putative cytoplasmic pr 64.8 6.9 0.00024 32.0 4.3 48 78-125 235-285 (382)
84 2ekk_A UBA domain from E3 ubiq 64.6 6.6 0.00023 22.3 3.0 23 12-41 24-46 (47)
85 1wr1_B Ubiquitin-like protein 64.3 6.3 0.00022 23.8 3.0 23 13-41 34-56 (58)
86 2dah_A Ubiquilin-3; UBA domain 63.5 8.8 0.0003 22.7 3.5 14 31-44 38-51 (54)
87 2g3q_A Protein YBL047C; endocy 63.3 7.1 0.00024 21.6 3.0 23 12-40 19-41 (43)
88 1ulv_A Glucodextranase; GH fam 59.8 8.4 0.00029 35.8 4.3 36 77-123 333-369 (1020)
89 3gt5_A N-acetylglucosamine 2-e 58.6 8.2 0.00028 31.4 3.7 97 6-115 110-208 (402)
90 3ren_A Glycosyl hydrolase, fam 57.2 52 0.0018 26.8 8.2 37 101-137 298-340 (350)
91 1whc_A RSGI RUH-027, UBA/UBX 3 56.8 11 0.00037 23.0 3.2 28 12-44 24-51 (64)
92 2dak_A Ubiquitin carboxyl-term 56.2 6.9 0.00024 23.8 2.2 26 13-44 25-50 (63)
93 1ify_A HHR23A, UV excision rep 53.7 8.4 0.00029 22.2 2.2 24 12-41 23-46 (49)
94 2z07_A Putative uncharacterize 51.8 8.5 0.00029 31.3 2.7 38 8-52 33-70 (420)
95 2dai_A Ubadc1, ubiquitin assoc 51.7 14 0.00049 23.8 3.3 14 31-44 57-70 (83)
96 2dag_A Ubiquitin carboxyl-term 51.6 14 0.00049 23.2 3.2 14 31-44 38-51 (74)
97 4fnv_A Heparinase III protein, 50.2 19 0.00065 31.9 4.9 26 101-126 342-374 (702)
98 2vn4_A Glucoamylase; hydrolase 49.7 14 0.00049 32.1 3.9 36 77-123 54-99 (599)
99 2cos_A Serine/threonine protei 49.3 23 0.00077 21.2 3.6 15 31-45 38-52 (54)
100 2cwb_A Chimera of immunoglobul 48.7 15 0.00051 25.0 3.1 27 9-41 79-105 (108)
101 1q02_A Sequestosome 1; helical 48.2 22 0.00075 21.1 3.4 28 22-51 1-28 (52)
102 1vek_A UBP14, ubiquitin-specif 48.0 19 0.00065 23.2 3.4 14 31-44 58-71 (84)
103 1dv0_A DNA repair protein HHR2 48.0 8.2 0.00028 22.1 1.5 27 9-41 16-42 (47)
104 3e6u_A LANC-like protein 1; al 46.9 8.1 0.00028 31.8 1.8 45 78-126 233-277 (411)
105 2dkl_A Trinucleotide repeat co 43.5 25 0.00085 22.8 3.5 38 7-44 17-62 (85)
106 4gl3_A Putative glucoamylase; 42.6 55 0.0019 27.3 6.3 80 9-90 55-139 (424)
107 2g0d_A Nisin biosynthesis prot 41.9 81 0.0028 25.1 7.1 26 99-124 226-254 (409)
108 1nc5_A Hypothetical protein YT 41.5 15 0.0005 29.6 2.6 47 78-124 215-263 (373)
109 1v7w_A Chitobiose phosphorylas 36.6 11 0.00036 33.5 1.0 34 9-50 349-382 (807)
110 1z96_A DNA-damage, UBA-domain 36.1 37 0.0013 17.9 3.0 8 31-38 32-39 (40)
111 1g2y_A Hepatocyte nuclear fact 31.7 45 0.0015 17.7 2.6 18 15-35 13-30 (32)
112 3c68_A Uncharacterized protein 31.2 2.6E+02 0.0087 24.9 9.1 31 8-43 323-353 (761)
113 3rrs_A Cellobiose phosphorylas 31.1 1.3E+02 0.0046 27.0 7.3 101 7-119 365-478 (822)
114 2okx_A Rhamnosidase B; alpha b 31.0 58 0.002 29.6 5.0 92 9-122 578-674 (956)
115 2g0d_A Nisin biosynthesis prot 29.3 1.1E+02 0.0038 24.3 5.9 31 21-52 221-253 (409)
116 4ae4_A Ubiquitin-associated pr 28.1 42 0.0014 22.9 2.8 24 14-43 25-48 (118)
117 3k7x_A LIN0763 protein; Q92DQ0 27.7 62 0.0021 25.9 4.1 35 7-41 44-81 (349)
118 3qde_A Cellobiose phosphorylas 26.8 1.5E+02 0.0053 26.5 6.9 100 8-119 359-471 (811)
119 2cp9_A EF-TS, EF-TSMT, elongat 25.7 65 0.0022 19.7 3.0 24 15-44 28-51 (64)
120 3s88_J GP2, GP2, envelope glyc 24.7 81 0.0028 22.7 3.8 36 8-43 90-126 (167)
121 3e6u_A LANC-like protein 1; al 23.7 57 0.0019 26.6 3.2 24 27-53 252-275 (411)
122 1fp3_A N-acyl-D-glucosamine 2- 23.2 1.5E+02 0.0052 23.4 5.7 84 31-123 19-105 (402)
123 1ia6_A Cellulase CEL9M; cellul 23.1 81 0.0028 26.2 4.1 69 26-115 275-343 (441)
124 2fba_A Glucoamylase Glu1; (alp 22.6 61 0.0021 27.4 3.3 41 77-123 70-116 (492)
125 1wj7_A Hypothetical protein (R 22.2 1E+02 0.0035 20.7 3.7 32 13-53 56-87 (104)
126 1gai_A Glucoamylase-471; hydro 22.2 56 0.0019 27.6 3.0 36 77-123 55-99 (472)
127 2lbc_A Ubiquitin carboxyl-term 21.9 71 0.0024 21.6 3.0 13 31-43 106-118 (126)
128 1dj7_A Ferredoxin thioredoxin 20.1 77 0.0026 21.8 2.8 41 27-89 7-47 (117)
No 1
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.97 E-value=2e-31 Score=239.13 Aligned_cols=148 Identities=46% Similarity=0.758 Sum_probs=131.3
Q ss_pred CCcC-CCchhHHHHHHHHHHHcCCCC--CccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccc
Q 048587 1 MQSF-GSQTWDCAFAVQALLACNLTD--EIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDC 77 (150)
Q Consensus 1 ~q~~-~s~~wdTala~~AL~~aG~~~--~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~ 77 (150)
+|+| ||++|||+|+++||.++|.+. ++.+.++||++||+++|++++ +|+|...+++.++|||+|++.++++||+|+
T Consensus 378 ~q~~~gs~vwdTalal~AL~~ag~~~~~~~~~~l~ka~~~L~~~Q~~~~-~~d~~~~~r~~~~GGW~f~~~~~~~pd~d~ 456 (732)
T 1w6k_A 378 MQGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDN-PPDYQKYYRQMRKGGFSFSTLDCGWIVSDC 456 (732)
T ss_dssp ECSSSCCHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCC-CTTGGGGTCCCCTTCCBSSCTTTCCBCHHH
T ss_pred eCCCCCCchHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHHhccccc-CCcccccccCCCCCeecCCCCCCCCCcccc
Confidence 5889 799999999999999999864 468899999999999998753 688888899999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhccChhhhhhhhhhcC
Q 048587 78 TAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRRAPSWLESLNPIEFFDEVIIEH 150 (150)
Q Consensus 78 Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~~~~~~~~l~~~~~~e~f~~~~~~~ 150 (150)
|+++|++|..+...+. ..|.++..+++++|++||+++||+||||++|+++++..||+++||+|.|+++|+|+
T Consensus 457 TA~vl~aL~~~~~~~~-~~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~ 528 (732)
T 1w6k_A 457 TAEALKAVLLLQEKCP-HVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDY 528 (732)
T ss_dssp HHHHHHHHHHHHHHCT-TCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCC
T ss_pred HHHHHHHHHHHhcccc-cccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCC
Confidence 9999999998864221 12446788999999999999999999999999999999999999999999988873
No 2
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.95 E-value=2.8e-28 Score=215.35 Aligned_cols=133 Identities=26% Similarity=0.350 Sum_probs=118.7
Q ss_pred CCcCCCchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHH
Q 048587 1 MQSFGSQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAE 80 (150)
Q Consensus 1 ~q~~~s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~ 80 (150)
||+|+||+|||+++++||.++|.+.+ ++.++||++||++.|+.+ +|+|...+++.++|||+|++.++++|++|+||+
T Consensus 304 ~~~~~s~vwdta~~l~AL~~~G~~~~-~~~~~ka~~~L~~~q~~~--~g~~~~~~~~~s~GgW~f~~~~~~~p~v~dTA~ 380 (631)
T 2sqc_A 304 FQASISPVWDTGLAVLALRAAGLPAD-HDRLVKAGEWLLDRQITV--PGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAV 380 (631)
T ss_dssp ECSSCCHHHHHHHHHHHHHHTTCCTT-CHHHHHHHHHHHHTCCCS--CCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHH
T ss_pred eCCCCChHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCC--CCChhhhcCCCCCCCCccccCCCCCCchHHHHH
Confidence 58999999999999999999999766 899999999999999954 599998899999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhccChhh
Q 048587 81 ALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRRAPSWLESLNPIE 141 (150)
Q Consensus 81 al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~~~~~~~~l~~~~~~e 141 (150)
+++||..++. +. .+...+.++++++||+++|++||||+.|+.+++..+++.+||.+
T Consensus 381 al~AL~~~~~-~~----~~~~~~~l~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~~ 436 (631)
T 2sqc_A 381 VVWALNTLRL-PD----ERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSD 436 (631)
T ss_dssp HHHHHTTCCC-SC----HHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCS
T ss_pred HHHHHHHcCC-Cc----cchhHHHHHHHHHHHHhhcCCCCCCCccCCCCcccccccccccc
Confidence 9999998763 10 11246789999999999999999999999999999999997643
No 3
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.65 E-value=4.3e-16 Score=137.60 Aligned_cols=106 Identities=23% Similarity=0.194 Sum_probs=85.1
Q ss_pred CchhHHHHHHHHHHHcCCCCC--ccHHHHHHHHHHHhhccCCCCCCCcccccCCC---CCCccccCCCCCC--CCcccch
Q 048587 6 SQTWDCAFAVQALLACNLTDE--IGPILMKAHDFLKTSQVTDNPPGDFESMFRHT---SKGGWTFSNKDHG--WPVSDCT 78 (150)
Q Consensus 6 s~~wdTala~~AL~~aG~~~~--~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~---~~GgW~fs~~~~~--~pd~d~T 78 (150)
+.+|||+++++||.++|..++ +.+.++++++||+++|.++ |+|+.+.... -.++++|+..+.. +|++|+|
T Consensus 373 p~v~dTA~al~AL~~~~~~~~~~~~~~l~~a~~wLls~Q~~d---Ggf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~T 449 (631)
T 2sqc_A 373 PDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSN---GGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVT 449 (631)
T ss_dssp CBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCCTT---SCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHH
T ss_pred CchHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHhhcCCC---CCCCccCCCCccccccccccccCCcccCCCCchHH
Confidence 459999999999999997531 4678999999999999986 8997542221 2467787653322 4899999
Q ss_pred HHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCc
Q 048587 79 AEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGV 122 (150)
Q Consensus 79 a~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW 122 (150)
+.+|++|..++. +...+.++||++||+++|++||||
T Consensus 450 a~vl~aL~~~g~--------~~~~~~i~rai~~L~~~Q~~DGsw 485 (631)
T 2sqc_A 450 AHVLECFGSFGY--------DDAWKVIRRAVEYLKREQKPDGSW 485 (631)
T ss_dssp HHHHHHHHTTTC--------CTTSHHHHHHHHHHHHHCCTTSCC
T ss_pred HHHHHHHHhcCC--------CccHHHHHHHHHHHHHhcCCCCCC
Confidence 999999988752 345789999999999999999999
No 4
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=99.58 E-value=3.9e-15 Score=125.40 Aligned_cols=107 Identities=11% Similarity=0.079 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcccc--cCCC------------------CCCccc-c---CCCCCCCCcccchHHHHHH
Q 048587 29 PILMKAHDFLKTSQVTDNPPGDFESM--FRHT------------------SKGGWT-F---SNKDHGWPVSDCTAEALLC 84 (150)
Q Consensus 29 ~~i~ra~~wL~~~Q~~d~~~G~~~~~--~~~~------------------~~GgW~-f---s~~~~~~pd~d~Ta~al~a 84 (150)
+..++.++.|+.-|.++ |+|... +... .+|.|. . ...+.+++|.|+|+.+|++
T Consensus 81 ~~A~~iAd~ll~~Q~~~---GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~a 157 (408)
T 1r76_A 81 KAARHVADVIVSFQTPA---GGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRF 157 (408)
T ss_dssp HHHHHHHHHHHHHCCTT---SCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHH
T ss_pred HHHHHHHHHHHHccccC---CCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHH
Confidence 56799999999999997 999763 1111 012221 0 0124457999999999999
Q ss_pred HHHhcCC-CCcccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhccChhh
Q 048587 85 CLYFSML-PPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRRAPSWLESLNPIE 141 (150)
Q Consensus 85 L~~~~~~-~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~~~~~~~~l~~~~~~e 141 (150)
|..+... .. .+.+..+++++||++||++||++||||+.|+++| ..|+++|+|.+
T Consensus 158 L~rv~~~~t~--~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn-~~y~~~IpFnD 212 (408)
T 1r76_A 158 LAQVVSQLAP--EEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLE-GGYHDAITYND 212 (408)
T ss_dssp HHHHHHHSCG--GGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCC-CGGGGSEECGG
T ss_pred HHHHHhhccc--cccHHHHHHHHHHHHHHHHccCCCCCCcCcCccc-cccccCCCcCc
Confidence 9887531 00 0224568999999999999999999999999999 69999998877
No 5
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=99.56 E-value=2e-15 Score=124.21 Aligned_cols=97 Identities=15% Similarity=0.240 Sum_probs=74.4
Q ss_pred HHHHHHhhccCCCCCCCcccc--cCCCCCCccccCCCCCCCCcccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHH
Q 048587 34 AHDFLKTSQVTDNPPGDFESM--FRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNC 111 (150)
Q Consensus 34 a~~wL~~~Q~~d~~~G~~~~~--~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~w 111 (150)
.++-|+.-|.++ |+|... +.....+. ...+..++|.|+|+.+|++|..+... .+.+..+++++||++|
T Consensus 36 ~Ad~~l~~Q~~~---GGW~kn~d~~~~~~~~---~~~~~~t~DnddTa~vl~~Larv~~~----~~~~~y~~Ai~Rgl~w 105 (332)
T 1gxm_A 36 RADVVLSYQQNN---GGWPKNLDYNSVGNGG---GGNESGTIDNGATITEMVFLAEVYKS----GGNTKYRDAVRKAANF 105 (332)
T ss_dssp GHHHHHHTCCTT---SCCCSCCCTTTCCCCC---CCCSCEECGGGTTHHHHHHHHHHHHH----HCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcCC---CCCCcceecccccccC---CCCCCCCccCccHHHHHHHHHHHhcc----ccchHHHHHHHHHHHH
Confidence 378889999986 999863 22221111 11244579999999999999887421 1123468999999999
Q ss_pred HHhcccCCCCccccCCCCcchhhhccChhh
Q 048587 112 IISMQSQTGGVPAWEPRRAPSWLESLNPIE 141 (150)
Q Consensus 112 L~~~Qn~dGGW~~~~~~~~~~~l~~~~~~e 141 (150)
|++||++||||+.|++++ ..++++|||.+
T Consensus 106 lL~mQ~~nGGWpqFdpd~-~~Yl~~IpFnD 134 (332)
T 1gxm_A 106 LVNSQYSTGALPQFYPLK-GGYSDHATFND 134 (332)
T ss_dssp HHHHCCTTSCCBSEESCC-SGGGGSEECGG
T ss_pred HHhccCCCCCccccCCCc-ccccccCCcch
Confidence 999999999999999997 89999998877
No 6
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.34 E-value=2e-12 Score=116.11 Aligned_cols=103 Identities=20% Similarity=0.273 Sum_probs=79.3
Q ss_pred CchhHHHHHHHHHHHcCCCCCcc---HHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHH
Q 048587 6 SQTWDCAFAVQALLACNLTDEIG---PILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEAL 82 (150)
Q Consensus 6 s~~wdTala~~AL~~aG~~~~~~---~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al 82 (150)
..+..|++++.||..+|...... +.++||++||+++|..| |+|.+.+..+....|. ....+++..|++||
T Consensus 584 ~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls~Q~~D---GGWge~~~s~~~~~y~----~~~~s~v~~TAwAL 656 (732)
T 1w6k_A 584 CFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMAD---GGWGEDFESCEERRYV----QSAQSQIHNTCWAM 656 (732)
T ss_dssp SHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTT---SCCCBCTHHHHHTSCC----BCSSCCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHhcccC---CCCCCCCccccccccC----CCCCCCHHHHHHHH
Confidence 45788999999999999865422 89999999999999987 8887532111111111 12246788999999
Q ss_pred HHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 048587 83 LCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPA 124 (150)
Q Consensus 83 ~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~ 124 (150)
+||+.++. .+.+.++|+++||+++|++||||..
T Consensus 657 lALl~ag~---------~~~~~i~r~v~wL~~~Q~~~Ggf~~ 689 (732)
T 1w6k_A 657 MGLMAVRH---------PDIEAQERGVRCLLEKQLPNGDWPQ 689 (732)
T ss_dssp HHHHHTTC---------SCHHHHHHHHHHHHHHCCTTSCCCC
T ss_pred HHHHHcCC---------CChHHHHHHHHHHHHhcCCCCCccC
Confidence 99998763 2678999999999999999999984
No 7
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=99.26 E-value=2.3e-12 Score=105.96 Aligned_cols=107 Identities=18% Similarity=0.173 Sum_probs=79.0
Q ss_pred CchhHHHHHHHHHHHcCC---CCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCC-CCCcccchHHH
Q 048587 6 SQTWDCAFAVQALLACNL---TDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDH-GWPVSDCTAEA 81 (150)
Q Consensus 6 s~~wdTala~~AL~~aG~---~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~-~~pd~d~Ta~a 81 (150)
-+.-+|+.++++|+.... .+.|++++.||++||+++|.++ |+|..++++. ++|- ++ .+.| |.|+.+
T Consensus 71 ~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~n---GGWpqFdpd~--~~Yl----~~IpFnD-Dvtarv 140 (332)
T 1gxm_A 71 IDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYST---GALPQFYPLK--GGYS----DHATFND-NGMAYA 140 (332)
T ss_dssp CGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTT---SCCBSEESCC--SGGG----GSEECGG-GHHHHH
T ss_pred ccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCC---CCccccCCCc--cccc----ccCCcch-HHHHHH
Confidence 456789999999987533 2348899999999999999996 9999888774 3322 11 1234 789999
Q ss_pred HHHHHHhcCCCCcccC-------CCCCHHHHHHHHHHHHhcccCCCCc
Q 048587 82 LLCCLYFSMLPPEIVG-------EKMEPERYYDAVNCIISMQSQTGGV 122 (150)
Q Consensus 82 l~aL~~~~~~~~~~~g-------~~~~~~~i~rav~wL~~~Qn~dGGW 122 (150)
|+.|..+........| .+...++++|||+||++.|-++|||
T Consensus 141 LelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw 188 (332)
T 1gxm_A 141 LTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGV 188 (332)
T ss_dssp HHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTE
T ss_pred HHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCC
Confidence 9999998631110000 0234689999999999999999987
No 8
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=99.17 E-value=1.9e-11 Score=104.13 Aligned_cols=93 Identities=16% Similarity=0.041 Sum_probs=71.0
Q ss_pred CchhHHHHHHHHHHHcCCC--CCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHH
Q 048587 6 SQTWDCAFAVQALLACNLT--DEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALL 83 (150)
Q Consensus 6 s~~wdTala~~AL~~aG~~--~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~ 83 (150)
+.+..|..|+++|...|.. .+ ...++|+++||++.|.+| |+|... .|+ ..|+--|-.|+.
T Consensus 148 ~~i~~T~~Al~aL~~lg~~~~~~-~i~i~kav~~L~s~Q~~D---Gsf~~~-------~~G-------e~d~~~ty~A~~ 209 (437)
T 2h6f_B 148 PHLAPTYAAVNALCIIGTEEAYD-IINREKLLQYLYSLKQPD---GSFLMH-------VGG-------EVDVRSAYCAAS 209 (437)
T ss_dssp BCHHHHHHHHHHHHHHCCHHHHT-TSCHHHHHHHHHTTBCTT---SCBBSS-------TTC-------CBSHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHhCCccccc-chHHHHHHHHHHHhCCCC---CCeeec-------CCC-------CccchhHHHHHH
Confidence 5678899999999999864 11 245899999999999997 887621 132 245556777888
Q ss_pred HHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 048587 84 CCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAW 125 (150)
Q Consensus 84 aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~ 125 (150)
+|.+++. .+.+.++|+++||+++||.||||+.-
T Consensus 210 ~L~llg~---------~~~~~v~k~~~~L~s~Q~~DGGwg~~ 242 (437)
T 2h6f_B 210 VASLTNI---------ITPDLFEGTAEWIARCQNWEGGIGGV 242 (437)
T ss_dssp HHHHTTC---------CCTTTTTTHHHHHHHHBCTTSSBCSS
T ss_pred HHHHhCC---------CChHHHHHHHHHHHHccCCCCCcCCC
Confidence 8777653 24567899999999999999999864
No 9
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=99.16 E-value=1.8e-11 Score=103.18 Aligned_cols=111 Identities=16% Similarity=0.206 Sum_probs=81.1
Q ss_pred CchhHHHHHHHHHHHcCC------CCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCC-CCCcccch
Q 048587 6 SQTWDCAFAVQALLACNL------TDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDH-GWPVSDCT 78 (150)
Q Consensus 6 s~~wdTala~~AL~~aG~------~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~-~~pd~d~T 78 (150)
-++-+|+.++++|..... .+.|++++.||++||+++|.++ |+|..+++++ ++|- ++ .+.| |.|
T Consensus 146 ~DnddTa~vl~aL~rv~~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~n---GGWpqFdpdn--~~y~----~~IpFnD-Dvt 215 (408)
T 1r76_A 146 IDNDATVTEIRFLAQVVSQLAPEEAAPYRDAALKGIEYLLASQFPN---GGWPQVWPLE--GGYH----DAITYND-DAL 215 (408)
T ss_dssp CGGGTTHHHHHHHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHSCTT---SCCBSBSSCC--CGGG----GSEECGG-GHH
T ss_pred CCCchHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHccCCC---CCCcCcCccc--cccc----cCCCcCc-HHH
Confidence 345789999999987532 2348999999999999999996 9999888876 2322 11 1234 789
Q ss_pred HHHHHHHHHhcCCCC--cccC---CCCCHHHHHHHHHHHHhcccC-CCCccccC
Q 048587 79 AEALLCCLYFSMLPP--EIVG---EKMEPERYYDAVNCIISMQSQ-TGGVPAWE 126 (150)
Q Consensus 79 a~al~aL~~~~~~~~--~~~g---~~~~~~~i~rav~wL~~~Qn~-dGGW~~~~ 126 (150)
+.+|+.|..+..... ..+. .....++++|||+||+..|-+ ||.|..+.
T Consensus 216 ~rvle~L~~~~~~~~~~~~~~~~~~~~~~~av~Rgi~~Ll~~Qe~~dGsw~rWg 269 (408)
T 1r76_A 216 VHVAELLSDIAAGRDGFGFVPPAIRTRALEATNAAIHCIVETQVVQDGKRLGWG 269 (408)
T ss_dssp HHHHHHHHHHHHTCTTCTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCC
T ss_pred HHHHHHHHHHHhccCcccccchhhhhhHHHHHHHHHHHHHHhhcccCCcccchh
Confidence 999999988763100 0000 013468999999999999999 99997543
No 10
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=99.11 E-value=1.4e-10 Score=98.72 Aligned_cols=96 Identities=15% Similarity=0.163 Sum_probs=72.7
Q ss_pred CchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHH
Q 048587 6 SQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCC 85 (150)
Q Consensus 6 s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL 85 (150)
+..|-+-+++.||...|...+ .+.++|+++||++.|.++ |+|... .| +.+.+.+|..||.+|
T Consensus 99 ~r~~l~y~~l~aL~lLg~~~~-~~~~~r~v~~l~s~Q~~d---GGf~g~-------~~-------~~~~i~~T~~Al~aL 160 (437)
T 2h6f_B 99 SRPWLCYWILHSLELLDEPIP-QIVATDVCQFLELCQSPE---GGFGGG-------PG-------QYPHLAPTYAAVNAL 160 (437)
T ss_dssp CHHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHBCTT---SSBBSS-------TT-------CCBCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHhCCCC---CCcCCc-------cC-------CCcchhHHHHHHHHH
Confidence 455777778889888886544 678999999999999986 887611 12 236778999999999
Q ss_pred HHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 048587 86 LYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAW 125 (150)
Q Consensus 86 ~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~ 125 (150)
..++... ......++|+++||+++|++||||+..
T Consensus 161 ~~lg~~~------~~~~i~i~kav~~L~s~Q~~DGsf~~~ 194 (437)
T 2h6f_B 161 CIIGTEE------AYDIINREKLLQYLYSLKQPDGSFLMH 194 (437)
T ss_dssp HHHCCHH------HHTTSCHHHHHHHHHTTBCTTSCBBSS
T ss_pred HHhCCcc------cccchHHHHHHHHHHHhCCCCCCeeec
Confidence 9986310 012234899999999999999999863
No 11
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=99.06 E-value=2.5e-10 Score=95.59 Aligned_cols=95 Identities=13% Similarity=-0.031 Sum_probs=71.1
Q ss_pred CchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHH
Q 048587 6 SQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCC 85 (150)
Q Consensus 6 s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL 85 (150)
+.+-.|..|+++|...|...+ ....+|+++||++.|.+| |+|.... .|+ -.|+--|-.|+.+|
T Consensus 120 ~~v~~T~~Al~~L~~lg~~~~-~id~~~~~~fL~~~Q~~D---GSf~g~~------~wG-------e~DirftY~Al~~l 182 (377)
T 1n4q_B 120 GHIAMTYTGLSCLIILGDDLS-RVDKEACLAGLRALQLED---GSFCAVP------EGS-------ENDMRFVYCASCIC 182 (377)
T ss_dssp CCHHHHHHHHHHHHHTTCCST-TSCHHHHHHHHHHHBCTT---SCBCSST------TCC-------CCBHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcccc-hhhHHHHHHHHHHhcCCC---CCeeecc------CCC-------cchhHHHHHHHHHH
Confidence 679999999999998885432 233589999999999997 8886110 233 23344477777777
Q ss_pred HHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccC
Q 048587 86 LYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWE 126 (150)
Q Consensus 86 ~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~ 126 (150)
.+++. ...+.++++++||+++||.||||+.-.
T Consensus 183 ~llg~---------~~~~~v~ka~~fL~scQn~DGGfGe~p 214 (377)
T 1n4q_B 183 YMLNN---------WSGMDMKKAISYIRRSMSYDNGLAQGA 214 (377)
T ss_dssp HHTTC---------GGGSCHHHHHHHHHHTBCTTSSBBSST
T ss_pred HHhcC---------CChHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 77653 245668999999999999999999754
No 12
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=99.03 E-value=5.6e-10 Score=91.87 Aligned_cols=93 Identities=16% Similarity=0.122 Sum_probs=71.1
Q ss_pred CchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHH
Q 048587 6 SQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCC 85 (150)
Q Consensus 6 s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL 85 (150)
+++-.|..|+++|...+.-+ ...++|+++||++.|.+| |+|... -|+ -+|+--|-.|+.+|
T Consensus 93 ~~l~~Ty~Al~~L~~l~~~~--~id~~k~~~fL~~~Q~~D---Gsf~~~-------~~g-------e~d~~~ty~Al~~L 153 (331)
T 3dss_B 93 PHLLYTLSAVQILTLYDSIH--VINVDKVVAYVQSLQKED---GSFAGD-------IWG-------EIDTRFSFCAVATL 153 (331)
T ss_dssp BCHHHHHHHHHHHHHTTCGG--GSCHHHHHHHHHHTBCTT---SCBBSS-------TTC-------CBCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCcc--HHHHHHHHHHHhccCCCC---CCEecc-------cCC-------CCchHHHHHHHHHH
Confidence 56788999999998876422 234899999999999987 887621 122 24566688899998
Q ss_pred HHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccC
Q 048587 86 LYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWE 126 (150)
Q Consensus 86 ~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~ 126 (150)
..++. .+.+.++++++||+++||.||||+.-.
T Consensus 154 ~llg~---------~~~~~~~k~v~~L~s~Q~~dGGfg~~p 185 (331)
T 3dss_B 154 ALLGK---------LDAINVEKAIEFVLSCMNFDGGFGCRP 185 (331)
T ss_dssp HHHTC---------GGGSCHHHHHHHHHTTBCTTSCBCSST
T ss_pred HhcCC---------CCHHHHHHHHHHHHHhCcCCCCcCCCC
Confidence 88863 234568999999999999999999764
No 13
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=98.93 E-value=3e-09 Score=92.07 Aligned_cols=93 Identities=14% Similarity=0.041 Sum_probs=72.3
Q ss_pred CCchhHHHHHHHHHHHcCCCC--CccHH----HHHHHHHHHhhccCCCCCCCcccccCCCCCC-ccccCCCCCCCCcccc
Q 048587 5 GSQTWDCAFAVQALLACNLTD--EIGPI----LMKAHDFLKTSQVTDNPPGDFESMFRHTSKG-GWTFSNKDHGWPVSDC 77 (150)
Q Consensus 5 ~s~~wdTala~~AL~~aG~~~--~~~~~----i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~G-gW~fs~~~~~~pd~d~ 77 (150)
.+++..|..|+++|...|... +..+. +.++++||++.|.+| |+|. | .|+ -.|+--
T Consensus 137 ~~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~D---GSF~--------g~~wG-------e~Dir~ 198 (520)
T 3q7a_B 137 IPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPD---GGFV--------VCEGG-------EVDVRG 198 (520)
T ss_dssp CCCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBCTT---SCBB--------SSTTC-------CBCHHH
T ss_pred CCcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhCCC---CCEe--------cCCCC-------CchHHH
Confidence 467999999999999988642 11122 668999999999997 8886 2 243 234555
Q ss_pred hHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 048587 78 TAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPA 124 (150)
Q Consensus 78 Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~ 124 (150)
|-.|+.+|.+++. ...+.++++++||+++||.||||+.
T Consensus 199 TY~Al~~L~lLg~---------~~~~~v~kav~fI~scQn~DGGfGe 236 (520)
T 3q7a_B 199 TYCLLVVATLLDI---------ITPELLHNVDKFVSACQTYEGGFAC 236 (520)
T ss_dssp HHHHHHHHHHHTC---------CCHHHHTTHHHHHHTTBCTTSSBCS
T ss_pred HHHHHHHHHHcCC---------CChHHHHHHHHHHHHhcCCCCCccC
Confidence 8888888888763 3678899999999999999999998
No 14
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=98.92 E-value=1.5e-09 Score=89.37 Aligned_cols=91 Identities=18% Similarity=-0.008 Sum_probs=67.6
Q ss_pred chhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHH
Q 048587 7 QTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCL 86 (150)
Q Consensus 7 ~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~ 86 (150)
++.-|-.|+.+|...|... .+.++|+++||+++|..| |+|+.. + ...++.--|.+|+.+|.
T Consensus 142 d~~~ty~Al~~L~llg~~~--~~~~~k~v~~L~s~Q~~d---GGfg~~-----p---------g~esh~~~T~~al~aL~ 202 (331)
T 3dss_B 142 DTRFSFCAVATLALLGKLD--AINVEKAIEFVLSCMNFD---GGFGCR-----P---------GSESHAGQIYCCTGFLA 202 (331)
T ss_dssp CHHHHHHHHHHHHHHTCGG--GSCHHHHHHHHHTTBCTT---SCBCSS-----T---------TCCCCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhCcCC---CCcCCC-----C---------CCCCcHHHHHHHHHHHH
Confidence 4556777777777777642 467999999999999986 777521 1 11345556999999999
Q ss_pred HhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 048587 87 YFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAW 125 (150)
Q Consensus 87 ~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~ 125 (150)
.++.. +...++|+++||+++|++||||..-
T Consensus 203 llg~~---------~~~~~~~~~~wL~~~Q~~dGGf~gr 232 (331)
T 3dss_B 203 ITSQL---------HQVNSDLLGWWLCERQLPSGGLNGR 232 (331)
T ss_dssp HTTCG---------GGSCHHHHHHHHHTTBCTTSCBCSS
T ss_pred hcccc---------chhhHHHHHHHHHHhCCCCCCcCCC
Confidence 88631 2234899999999999999999753
No 15
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=98.88 E-value=2.8e-09 Score=84.66 Aligned_cols=104 Identities=16% Similarity=0.080 Sum_probs=70.5
Q ss_pred CCchhHHHHHHHHHHHcCCC--CCccHHHHHHHHHHHh-hccCCCCCCCcccccCCCC---CCccccCCCCCCCCcccch
Q 048587 5 GSQTWDCAFAVQALLACNLT--DEIGPILMKAHDFLKT-SQVTDNPPGDFESMFRHTS---KGGWTFSNKDHGWPVSDCT 78 (150)
Q Consensus 5 ~s~~wdTala~~AL~~aG~~--~~~~~~i~ra~~wL~~-~Q~~d~~~G~~~~~~~~~~---~GgW~fs~~~~~~pd~d~T 78 (150)
.+..|.|++++.+|..+... .+ .+.|+|+++||++ +|.+| |.|....+-+. .|++. ....+++..|
T Consensus 64 ~~s~wlTa~v~~~l~~a~~~~~v~-~~~i~~a~~~L~~~~Q~~d---G~f~~~~~~~~~~~~g~~~----~~~~~~~~lt 135 (277)
T 1qqf_A 64 PPSTWLTAYVSRVFSLAANLIAID-SQVLCGAVKWLILEKQKPD---GVFQEDGPVIHQEMIGGFR----NTKEADVSLT 135 (277)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCCC-HHHHHHHHHHHHHHHBCTT---SCBCCSSCCSCGGGGGGGG----SCTTHHHHHH
T ss_pred CccHHHHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHhccCCC---CCccCCccccchhhcCCCC----CCccCccchH
Confidence 36799999999999988642 23 5799999999996 99987 88863211000 12211 0001345669
Q ss_pred HHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccC
Q 048587 79 AEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQ 118 (150)
Q Consensus 79 a~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~ 118 (150)
+.+|.+|...+.... -|.+...+.|++|++||.+.|+.
T Consensus 136 a~vl~aL~~~~~~~~--~~~~~~~~~i~~A~~~L~~~~~~ 173 (277)
T 1qqf_A 136 AFVLIALQEARDICE--GQVNSLPGSINKAGEYLEASYLN 173 (277)
T ss_dssp HHHHHHHHHHHHHHT--TTCTTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhccc--cCCCchHHHHHHHHHHHHHHhcc
Confidence 999999988742100 02334578999999999999885
No 16
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=98.84 E-value=4.6e-09 Score=84.84 Aligned_cols=104 Identities=17% Similarity=0.091 Sum_probs=70.9
Q ss_pred CCchhHHHHHHHHHHHcCCC--CCccHHHHHHHHHHHh-hccCCCCCCCcccccCCCC---CCccccCCCCCCCCcccch
Q 048587 5 GSQTWDCAFAVQALLACNLT--DEIGPILMKAHDFLKT-SQVTDNPPGDFESMFRHTS---KGGWTFSNKDHGWPVSDCT 78 (150)
Q Consensus 5 ~s~~wdTala~~AL~~aG~~--~~~~~~i~ra~~wL~~-~Q~~d~~~G~~~~~~~~~~---~GgW~fs~~~~~~pd~d~T 78 (150)
.+..|.|++++.+|..+... .+ .+.|+||++||++ +|.+| |.|....+-+. .|++. ....+++..|
T Consensus 80 ~~s~wlTa~v~~~l~~a~~~~~v~-~~~i~~a~~~L~~~~Q~~d---Gsf~~~~~~~~~~~~g~~~----~~~~~~~~~t 151 (310)
T 2wy7_A 80 APSTWLTAYVVKVFSLAVNLIAID-SQVLCGAVKWLILEKQKPD---GVFQEDAPVIHQEMIGGLR----NNNEKDMALT 151 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCCC-HHHHHHHHHHHHHHHBCTT---SCBCCSSCCSCGGGGGGGT----TCSCHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhhcCCC---CccccCCCccCHhhcCCcc----cccccccchH
Confidence 36799999999999988642 22 5799999999996 99987 88863221111 12221 0001345569
Q ss_pred HHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccC
Q 048587 79 AEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQ 118 (150)
Q Consensus 79 a~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~ 118 (150)
+.+|.+|...+... .-|.+...+.|++|++||.+.|+.
T Consensus 152 a~vl~aL~~~~~~~--~~~~~~~~~~i~~A~~~L~~~~~~ 189 (310)
T 2wy7_A 152 AFVLISLQEAKDIC--EEQVNSLPGSITKAGDFLEANYMN 189 (310)
T ss_dssp HHHHHHHHHHHHHH--TTTCTTHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhccccc--ccCCcchHHHHHHHHHHHHHHhhc
Confidence 99999998874210 002334578999999999999885
No 17
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=98.81 E-value=1.7e-08 Score=83.54 Aligned_cols=93 Identities=17% Similarity=0.119 Sum_probs=68.1
Q ss_pred HHHHHHHHHcCC----CC----CccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHH
Q 048587 12 AFAVQALLACNL----TD----EIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALL 83 (150)
Q Consensus 12 ala~~AL~~aG~----~~----~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~ 83 (150)
-++++.|...+. ++ +....|+++++||++.|..| |+|+. |. . ..++...|+.+++
T Consensus 66 ~~v~~~l~~~~~w~~~~~~~~~~~~~~i~~g~~~ll~~Q~~d---Ggf~~---------~~--~---~~~~~~lTa~v~~ 128 (367)
T 1hzf_A 66 LAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKAD---GSYAA---------WL--S---RDSSTWLTAFVLK 128 (367)
T ss_dssp HHHHHHHHHTTCSTTSCTTHHHHHHHHHHHHHHHHHTTBCTT---SCBCS---------ST--T---SCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccCChhHHHHHHHHHHHHHHHHHhccCCC---CCeec---------cC--C---CCCcHHHHHHHHH
Confidence 355666655442 22 23567999999999999987 77752 21 1 1245567999999
Q ss_pred HHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccCC
Q 048587 84 CCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEP 127 (150)
Q Consensus 84 aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~~ 127 (150)
+|..+++. ..++.+.++||++||++.|++||+|..-.+
T Consensus 129 ~l~~a~~~------~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~ 166 (367)
T 1hzf_A 129 VLSLAQEQ------VGGSPEKLQETSNWLLSQQQADGSFQDPCP 166 (367)
T ss_dssp HHHHHGGG------TCCCHHHHHHHHHHHGGGBCTTSCBCCSSC
T ss_pred HHHHHHHH------hCCCHHHHHHHHHHHHHhhccCCCcccccc
Confidence 99998742 245789999999999999999999976543
No 18
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=98.70 E-value=8.2e-08 Score=76.14 Aligned_cols=77 Identities=14% Similarity=0.035 Sum_probs=61.3
Q ss_pred cHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHHHhcCCCCcccCCCCCHHHHHH
Q 048587 28 GPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYD 107 (150)
Q Consensus 28 ~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~r 107 (150)
...|+++++++++.|..| |+|+. |+ ...++...|+.++++|..+.+. + .++.+.+++
T Consensus 37 ~~~i~~g~~~~l~~q~~d---Ggf~~---------f~-----~~~~s~wlTa~v~~~l~~a~~~-----~-~v~~~~i~~ 93 (277)
T 1qqf_A 37 LELIKKGYTQQLAFKQPI---SAYAA---------FN-----NRPPSTWLTAYVSRVFSLAANL-----I-AIDSQVLCG 93 (277)
T ss_dssp HHHHHHHHHHHHTTBCTT---SCBCS---------ST-----TSCCCHHHHHHHHHHHHHHTTT-----S-CCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCC---CCccc---------cC-----CCCccHHHHHHHHHHHHHHhhc-----C-CCCHHHHHH
Confidence 456899999999999987 77752 21 1246778899999999998742 1 467899999
Q ss_pred HHHHHHh-cccCCCCccccCC
Q 048587 108 AVNCIIS-MQSQTGGVPAWEP 127 (150)
Q Consensus 108 av~wL~~-~Qn~dGGW~~~~~ 127 (150)
|++||++ .|++||+|....+
T Consensus 94 a~~~L~~~~Q~~dG~f~~~~~ 114 (277)
T 1qqf_A 94 AVKWLILEKQKPDGVFQEDGP 114 (277)
T ss_dssp HHHHHHHHHBCTTSCBCCSSC
T ss_pred HHHHHHHhccCCCCCccCCcc
Confidence 9999996 9999999987653
No 19
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=98.66 E-value=1.2e-07 Score=76.43 Aligned_cols=78 Identities=15% Similarity=0.073 Sum_probs=61.6
Q ss_pred cHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHHHhcCCCCcccCCCCCHHHHHH
Q 048587 28 GPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYD 107 (150)
Q Consensus 28 ~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~r 107 (150)
...|+++++|+++.|..| |+|+. |+ ...++...|+.++++|..+.+. ..++.+.+++
T Consensus 53 ~~~i~~g~~~~l~~q~~d---Ggf~~---------f~-----~~~~s~wlTa~v~~~l~~a~~~------~~v~~~~i~~ 109 (310)
T 2wy7_A 53 LELIKKGYTQQLAFRQPS---SAFAA---------FV-----KRAPSTWLTAYVVKVFSLAVNL------IAIDSQVLCG 109 (310)
T ss_dssp HHHHHHHHHHHHTTBCTT---SCBCS---------ST-----TSCCCHHHHHHHHHHHHHHTTT------SCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCC---CCccc---------CC-----CCCccHHHHHHHHHHHHHHHhc------CCCCHHHHHH
Confidence 357899999999999987 77752 21 1246777899999999998742 1467899999
Q ss_pred HHHHHHh-cccCCCCccccCCC
Q 048587 108 AVNCIIS-MQSQTGGVPAWEPR 128 (150)
Q Consensus 108 av~wL~~-~Qn~dGGW~~~~~~ 128 (150)
|++||++ .|++||+|....+.
T Consensus 110 a~~~L~~~~Q~~dGsf~~~~~~ 131 (310)
T 2wy7_A 110 AVKWLILEKQKPDGVFQEDAPV 131 (310)
T ss_dssp HHHHHHHHHBCTTSCBCCSSCC
T ss_pred HHHHHHHhhcCCCCccccCCCc
Confidence 9999996 99999999876543
No 20
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=98.64 E-value=6.9e-08 Score=79.87 Aligned_cols=101 Identities=18% Similarity=0.133 Sum_probs=68.0
Q ss_pred CchhHHHHHHHHHHHcCCC--CCccHHHHHHHHHHHhhccCCCCCCCcccccCC---CCCCccccCCCCCCCCcccchHH
Q 048587 6 SQTWDCAFAVQALLACNLT--DEIGPILMKAHDFLKTSQVTDNPPGDFESMFRH---TSKGGWTFSNKDHGWPVSDCTAE 80 (150)
Q Consensus 6 s~~wdTala~~AL~~aG~~--~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~---~~~GgW~fs~~~~~~pd~d~Ta~ 80 (150)
+..|.|++++.+|..++.. .+ .+.|+||++||+++|.+| |+|.+..+- ...||+. +..+++..||+
T Consensus 118 ~~~~lTa~v~~~l~~a~~~~~v~-~~~i~~a~~~L~~~Q~~d---G~~~~~~~~~~~~~~gg~~-----~~~~~~~lTA~ 188 (367)
T 1hzf_A 118 SSTWLTAFVLKVLSLAQEQVGGS-PEKLQETSNWLLSQQQAD---GSFQDPCPVLDRSMQGGLV-----GNDETVALTAF 188 (367)
T ss_dssp CCHHHHHHHHHHHHHHGGGTCCC-HHHHHHHHHHHGGGBCTT---SCBCCSSCCSCGGGGGGGS-----STTHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhccC---CCcccccccccccccCCCC-----CCcccccchHH
Confidence 6789999999999988732 22 689999999999999987 888743111 1123221 11346778999
Q ss_pred HHHHHHHhcCCCCcccCC---CCCHHHHHHHHHHHHhc
Q 048587 81 ALLCCLYFSMLPPEIVGE---KMEPERYYDAVNCIISM 115 (150)
Q Consensus 81 al~aL~~~~~~~~~~~g~---~~~~~~i~rav~wL~~~ 115 (150)
+|.||...+....+.... ....+.|+||++||.+.
T Consensus 189 vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~ 226 (367)
T 1hzf_A 189 VTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEK 226 (367)
T ss_dssp HHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHh
Confidence 999998865311000000 01346899999999876
No 21
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=98.49 E-value=2.6e-07 Score=77.27 Aligned_cols=110 Identities=13% Similarity=-0.019 Sum_probs=72.0
Q ss_pred CCchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhcc-CCC-----CCCCcccccCCCCCCccccC----CCCCCCCc
Q 048587 5 GSQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQV-TDN-----PPGDFESMFRHTSKGGWTFS----NKDHGWPV 74 (150)
Q Consensus 5 ~s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~-~d~-----~~G~~~~~~~~~~~GgW~fs----~~~~~~pd 74 (150)
-+.+|-+=+++.+|.--|..++. ..+++++||++.|. ++. ..|+|+.+..+..+-. .+. .....+|.
T Consensus 45 ~~r~~~~yw~l~~L~lLg~l~~~--~~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~p~~-d~~~~~~~~~~d~~~ 121 (377)
T 1n4q_B 45 TSRLTIAFFALSGLDMLDSLDVV--NKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFN-PSKNPGTAHPYDSGH 121 (377)
T ss_dssp GGHHHHHHHHHHHHHHTTCGGGS--CHHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCCC-SSCSCCCCCTTCCCC
T ss_pred cchHHHHHHHHHHHHHhCCCCcc--CHHHHHHHHHHhcCCccccccCCCCCccCCCcccCCChh-hhccccccccCCCCC
Confidence 46788999999999888853322 27899999999998 210 0267654322211100 000 00011478
Q ss_pred ccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 048587 75 SDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAW 125 (150)
Q Consensus 75 ~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~ 125 (150)
+.+|..||.+|..++... +....+++++||.++|++||||...
T Consensus 122 v~~T~~Al~~L~~lg~~~--------~~id~~~~~~fL~~~Q~~DGSf~g~ 164 (377)
T 1n4q_B 122 IAMTYTGLSCLIILGDDL--------SRVDKEACLAGLRALQLEDGSFCAV 164 (377)
T ss_dssp HHHHHHHHHHHHHTTCCS--------TTSCHHHHHHHHHHHBCTTSCBCSS
T ss_pred HHHHHHHHHHHHHhCccc--------chhhHHHHHHHHHHhcCCCCCeeec
Confidence 999999999999886321 1222478999999999999999763
No 22
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=98.49 E-value=5.5e-07 Score=77.99 Aligned_cols=101 Identities=12% Similarity=0.041 Sum_probs=73.7
Q ss_pred CCchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHH
Q 048587 5 GSQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLC 84 (150)
Q Consensus 5 ~s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~a 84 (150)
-+..|-.=+++.+|.-.|...+ ....+++++||++.|.++ |+|+ ++... ...|.+-+|-.||.+
T Consensus 86 asr~wl~Yw~l~aL~LLg~~ld-~~~~~~~I~~Ils~Q~~d---GGFg---------g~p~~---~~~~hla~TysAV~a 149 (520)
T 3q7a_B 86 ASRPWLVFWTVHSLDLLGVALD-QGTKDRVVSTLLHFLSPK---GGFG---------GGPAN---SQIPHLLPTYASVCS 149 (520)
T ss_dssp GGHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHHTTBCTT---SSBC---------SSCTT---TSCCCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCC---CCCC---------CCCCC---CCCCcHHHHHHHHHH
Confidence 4677888889999988886544 567889999999999986 7764 22210 235788999999999
Q ss_pred HHHhcCCCCcccCCCCCHHH--HHHHHHHHHhcccCCCCccc
Q 048587 85 CLYFSMLPPEIVGEKMEPER--YYDAVNCIISMQSQTGGVPA 124 (150)
Q Consensus 85 L~~~~~~~~~~~g~~~~~~~--i~rav~wL~~~Qn~dGGW~~ 124 (150)
|..++...++ .....-. ++++++||.++|++||||..
T Consensus 150 L~ilg~~~p~---~~~~~Id~~r~k~v~fL~slQ~~DGSF~g 188 (520)
T 3q7a_B 150 LAIAGNDSST---GGWKDLAAARQSIYEFFMRCKRPDGGFVV 188 (520)
T ss_dssp HHHHCBSSTT---SBHHHHHHTHHHHHHHHHHHBCTTSCBBS
T ss_pred HHHhCccccc---hhhhhhhhHHHHHHHHHHHHhCCCCCEec
Confidence 9999743210 0111112 66899999999999999964
No 23
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=98.40 E-value=8.7e-07 Score=74.89 Aligned_cols=90 Identities=12% Similarity=0.006 Sum_probs=64.4
Q ss_pred CCchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHH
Q 048587 5 GSQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLC 84 (150)
Q Consensus 5 ~s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~a 84 (150)
.+..+..+|+++||+.+|.... .+.+..|+..|..+ .+. .|+ +-++|.||.|++|
T Consensus 133 ~tn~Yq~sL~vLALC~~g~~v~-----~~~v~~Ll~~~~~~----~~~-------~g~---------~~sVDT~AMA~lA 187 (414)
T 2bb6_A 133 RTSYYQYSLGILALCVHQKRVH-----DSVVGKLLYAVEHK----PHL-------LQD---------HVSVDTMAMAGMA 187 (414)
T ss_dssp SSCHHHHHHHHHHHHHTTCCCC-----HHHHHHHHHHHHSS----SCS-------CCT---------TTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcCCCcc-----HHHHHHHHHHhhcc----CcC-------CCC---------cccccHHHHHHHH
Confidence 4567899999999999998654 34566677766542 211 122 3489999999999
Q ss_pred HHHhcCCCCcccCCCCCHHHHHHHH----HHHHhcccCCCCcc
Q 048587 85 CLYFSMLPPEIVGEKMEPERYYDAV----NCIISMQSQTGGVP 123 (150)
Q Consensus 85 L~~~~~~~~~~~g~~~~~~~i~rav----~wL~~~Qn~dGGW~ 123 (150)
|..+.+... .+..++.|++|+ .+|++.|++||+||
T Consensus 188 L~C~~~~~~----~~~~~~~i~~al~~l~~~l~~~Q~~dG~FG 226 (414)
T 2bb6_A 188 FSCLELSNL----NPKQRNRINLALKRVQEKILKAQTPEGYFG 226 (414)
T ss_dssp HHHHHHHTS----CGGGHHHHHHHHHHHHHHHHHTBCTTSCBS
T ss_pred HHHHhhcCC----CcchHHHHHHHHHHHHHHHHHhhcCCCCcc
Confidence 999864110 012357788888 88889999999998
No 24
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=98.36 E-value=9.1e-07 Score=84.50 Aligned_cols=92 Identities=18% Similarity=0.224 Sum_probs=67.8
Q ss_pred CchhHHHHHHHHHHHcCC--CCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCC-CcccchHHHH
Q 048587 6 SQTWDCAFAVQALLACNL--TDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGW-PVSDCTAEAL 82 (150)
Q Consensus 6 s~~wdTala~~AL~~aG~--~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~-pd~d~Ta~al 82 (150)
+..|-||+++.+|.++.. .-+ .+.++||++||+++|..| |.|.+ .|.|.......|. .++..||.+|
T Consensus 1014 ~s~wlTAyv~~~l~~a~~~~~v~-~~~l~~a~~wL~~~Q~~d---G~f~~------~g~~~~~~m~gg~~~~~~lTAyvl 1083 (1451)
T 4acq_A 1014 GNTWLTAFVLKTFAQARAYIFID-EAHITQALIWLSQRQKDN---GCFRS------SGSLLNNAIKGGVEDEVTLSAYIT 1083 (1451)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCCC-THHHHHHHHHHHHTEETT---TEECC------CCCCSCGGGCCSCSCHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHhhhhcccC-HHHHHHHHHHHHhhcccC---Ccccc------cCcccchhhcCCCCCCccchHHHH
Confidence 678999999999998863 223 689999999999999986 88863 2333221111111 3556799999
Q ss_pred HHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhc
Q 048587 83 LCCLYFSMLPPEIVGEKMEPERYYDAVNCIISM 115 (150)
Q Consensus 83 ~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~ 115 (150)
.||..++. +..++.|++|++||.+.
T Consensus 1084 ~aL~~~g~--------~~~~~~i~~A~~~L~~~ 1108 (1451)
T 4acq_A 1084 IALLEIPL--------TVTHPVVRNALFCLESA 1108 (1451)
T ss_dssp HHHHHTTC--------CTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCC--------CCCCHHHHHHHHHHHHh
Confidence 99988752 34568999999999865
No 25
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=98.36 E-value=9.8e-07 Score=74.58 Aligned_cols=85 Identities=15% Similarity=-0.015 Sum_probs=63.5
Q ss_pred CchhHHHHHHHHHHHcCCC---CCccHHHHHHH----HHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccch
Q 048587 6 SQTWDCAFAVQALLACNLT---DEIGPILMKAH----DFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCT 78 (150)
Q Consensus 6 s~~wdTala~~AL~~aG~~---~~~~~~i~ra~----~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~T 78 (150)
..|..||+|++||...+.. +..++.|.+|+ ++|+++|.+| |.|+ ++--|
T Consensus 176 ~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al~~l~~~l~~~Q~~d---G~FG---------------------N~~ST 231 (414)
T 2bb6_A 176 VSVDTMAMAGMAFSCLELSNLNPKQRNRINLALKRVQEKILKAQTPE---GYFG---------------------NVYST 231 (414)
T ss_dssp THHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTBCTT---SCBS---------------------STTTH
T ss_pred ccccHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhcCC---CCcc---------------------chhhH
Confidence 3589999999999876542 23367788888 7777889986 6542 12239
Q ss_pred HHHHHHHHHhcCCCCcccCCCCCH--HHHHHHHHHHHhcccCCCCcc
Q 048587 79 AEALLCCLYFSMLPPEIVGEKMEP--ERYYDAVNCIISMQSQTGGVP 123 (150)
Q Consensus 79 a~al~aL~~~~~~~~~~~g~~~~~--~~i~rav~wL~~~Qn~dGGW~ 123 (150)
+.||.||...+.. ... -.+.+++++|++ |++||+|.
T Consensus 232 ~lA~QAL~~~~~~--------~~~~~w~~~~a~~~Ll~-q~~dG~F~ 269 (414)
T 2bb6_A 232 PLALQLLMGSLRP--------SVELGTACLKAKAALQA-SLQHKTFQ 269 (414)
T ss_dssp HHHHHHHTTCSSC--------CHHHHHHHHHHHHHHHH-HHTTTCCC
T ss_pred HHHHHHHHhcCCC--------cccccchHHHHHHHHHH-hccCCCCC
Confidence 9999999887532 122 367889999999 99999996
No 26
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=98.16 E-value=3.5e-06 Score=80.51 Aligned_cols=80 Identities=11% Similarity=-0.037 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHH
Q 048587 29 PILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDA 108 (150)
Q Consensus 29 ~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~ra 108 (150)
..|+++++||++.|..| |+|+.+... . .+..++...||.++.+|..+.+. ..++++.++||
T Consensus 983 ~~i~~g~~~ll~~q~~d---Ggf~~f~~~---------~-~~~~~s~wlTAyv~~~l~~a~~~------~~v~~~~l~~a 1043 (1451)
T 4acq_A 983 GYLNTGYQRQLNYKHYD---GSYSTFGER---------Y-GRNQGNTWLTAFVLKTFAQARAY------IFIDEAHITQA 1043 (1451)
T ss_dssp HHHHHHHHHHGGGBCTT---SCBCSSTTG---------G-GCCCCCHHHHHHHHHHHHHHTTT------SCCCTHHHHHH
T ss_pred HHHHHHHHHHHhhcCCC---CCeeeccCC---------C-CCCCCchhHHHHHHHHHHHhhhh------cccCHHHHHHH
Confidence 34789999999999987 777532110 0 01235677899999999998742 24678999999
Q ss_pred HHHHHhcccCCCCccccCC
Q 048587 109 VNCIISMQSQTGGVPAWEP 127 (150)
Q Consensus 109 v~wL~~~Qn~dGGW~~~~~ 127 (150)
++||++.|++||+|....+
T Consensus 1044 ~~wL~~~Q~~dG~f~~~g~ 1062 (1451)
T 4acq_A 1044 LIWLSQRQKDNGCFRSSGS 1062 (1451)
T ss_dssp HHHHHHTEETTTEECCCCC
T ss_pred HHHHHhhcccCCcccccCc
Confidence 9999999999999986543
No 27
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=98.15 E-value=5.4e-06 Score=75.83 Aligned_cols=103 Identities=18% Similarity=0.116 Sum_probs=69.2
Q ss_pred CchhHHHHHHHHHHHcCCC--CCccHHHHHHHHHHHh-hccCCCCCCCccccc--CC-CCCCccccCCCCCCCCcccchH
Q 048587 6 SQTWDCAFAVQALLACNLT--DEIGPILMKAHDFLKT-SQVTDNPPGDFESMF--RH-TSKGGWTFSNKDHGWPVSDCTA 79 (150)
Q Consensus 6 s~~wdTala~~AL~~aG~~--~~~~~~i~ra~~wL~~-~Q~~d~~~G~~~~~~--~~-~~~GgW~fs~~~~~~pd~d~Ta 79 (150)
+..|.||+++..|..+... -+ ...|++|++||++ +|..+ |.|.... .+ ...||+. ....+++..||
T Consensus 326 ~s~wlTAyv~~~l~~a~~~~~v~-~~~i~~al~~L~~~~Q~~d---G~f~~~~~~~~~~m~gg~~----~~~~~~~~ltA 397 (915)
T 2hr0_B 326 PSTWLTAYVVKVFSLAVNLIAID-SQVLCGAVKWLILEKQKPD---GVFQEDAPVIHQEMIGGLR----NNNEKDMALTA 397 (915)
T ss_dssp BCHHHHHHHHHHHHTTTTTSCCC-HHHHHHHHHHHHHHHBCTT---SCBCCCSCCSSSCCCCSCC----CCTTHHHHHHH
T ss_pred CcceehHHHHHHHHHhhhcCCCC-HHHHHHHHHHHHHhhccCC---CccccCccccchhhcCCcc----CccccccccHH
Confidence 5789999999999988532 22 5889999999995 89986 8885321 11 1122221 00013456699
Q ss_pred HHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccC
Q 048587 80 EALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQ 118 (150)
Q Consensus 80 ~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~ 118 (150)
.+|.+|...+.... -+.+...+.|++|++||.+.|+.
T Consensus 398 yvl~aL~~~g~~~~--~~~~~~~~~i~~A~~yL~~~~~~ 434 (915)
T 2hr0_B 398 FVLISLQEAKDICE--EQVNSLPGSITKAGDFLEANYMN 434 (915)
T ss_dssp HHHHHHHHHTTTST--TTCTTHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHhcccccc--cCcccchHHHHHHHHHHHHhhhc
Confidence 99999988753210 02334578999999999998765
No 28
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=98.02 E-value=3.7e-06 Score=70.70 Aligned_cols=84 Identities=14% Similarity=0.078 Sum_probs=64.5
Q ss_pred chhHHHHHHHHHHHcCC---C---CC----ccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCccc
Q 048587 7 QTWDCAFAVQALLACNL---T---DE----IGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSD 76 (150)
Q Consensus 7 ~~wdTala~~AL~~aG~---~---~~----~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d 76 (150)
.|..+|+|++||..... . +. ....|++++++|+++|.+| |.|+ +.-
T Consensus 151 sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~~~~l~~~q~~d---G~fG---------------------n~y 206 (399)
T 2pmv_A 151 NVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLKDIVEKISMKIKDN---GIIG---------------------DIY 206 (399)
T ss_dssp CHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHHHHHHHHHTTSBCTT---SCBS---------------------SHH
T ss_pred cchHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHhhcCC---Cccc---------------------ccc
Confidence 57889999999976644 1 12 3677889999999999986 6542 334
Q ss_pred chHHHHHHHHHhcCCCCcccCCCCCHH-HHHHHHHHHHhcccCCCCcc
Q 048587 77 CTAEALLCCLYFSMLPPEIVGEKMEPE-RYYDAVNCIISMQSQTGGVP 123 (150)
Q Consensus 77 ~Ta~al~aL~~~~~~~~~~~g~~~~~~-~i~rav~wL~~~Qn~dGGW~ 123 (150)
-|+.||.||...+..+ ..+ .+.++++||++ |++||+|.
T Consensus 207 ST~LA~QAL~~~~~~~--------~~~W~c~~al~~l~~-q~~~G~F~ 245 (399)
T 2pmv_A 207 STGLAMQALSVTPEPS--------KKEWNCKKTTDMILN-EIKQGKFH 245 (399)
T ss_dssp HHHHHHHHHHHCSSCC--------SSCCCHHHHHHHHHH-HHTTTTTC
T ss_pred cHHHHHHHHHhcCCCc--------cccccHHHHHHHHHH-HhhCCCcC
Confidence 6999999999986422 224 57889999999 99999996
No 29
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=97.97 E-value=1.8e-05 Score=74.59 Aligned_cols=75 Identities=15% Similarity=-0.022 Sum_probs=59.3
Q ss_pred cHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHHHhcCCCCcccCCCCCHHHHHH
Q 048587 28 GPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYD 107 (150)
Q Consensus 28 ~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~r 107 (150)
...|++++++|++.|..| |+|+.+ . ...++...|+.++.+|..+.. .|..++.+.+++
T Consensus 871 ~~~i~~g~~rll~~q~~d---Ggf~~f---------~-----~~~~s~~lTa~v~~~l~~a~~-----~~~~v~~~~l~~ 928 (1325)
T 2pn5_A 871 TNLLRQGYQNQMRYRQTD---GSFGLW---------E-----TTNGSVFLTAFVGTSMQTAVK-----YISDIDAAMVEK 928 (1325)
T ss_dssp HHHHHHHHHHHGGGBCTT---SCBCSS---------S-----SSCCCHHHHHHHHHHHHHHTT-----TCSCSCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCC---CCeecc---------C-----CCCCCeeehHHHHHHHHHHHh-----hEEcCCHHHHHH
Confidence 345888999999999987 777522 1 123667789999999999864 233567899999
Q ss_pred HHHHHHhcccCCCCccc
Q 048587 108 AVNCIISMQSQTGGVPA 124 (150)
Q Consensus 108 av~wL~~~Qn~dGGW~~ 124 (150)
|++||.+.|++||.|..
T Consensus 929 a~~~L~~~q~~dG~f~~ 945 (1325)
T 2pn5_A 929 ALDWLASKQHFSGRFDK 945 (1325)
T ss_dssp HHHHHHHTCCTTSCCCC
T ss_pred HHHHHHhhhccCCCccc
Confidence 99999999999999854
No 30
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=97.92 E-value=8.4e-06 Score=76.90 Aligned_cols=101 Identities=15% Similarity=0.140 Sum_probs=67.9
Q ss_pred CCchhHHHHHHHHHHHc---CCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCC---CCCccccCCCCCCCCcccch
Q 048587 5 GSQTWDCAFAVQALLAC---NLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHT---SKGGWTFSNKDHGWPVSDCT 78 (150)
Q Consensus 5 ~s~~wdTala~~AL~~a---G~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~---~~GgW~fs~~~~~~pd~d~T 78 (150)
.+..|-|++++.+|..+ |..-+ .+.++||++||+++|.+| |.|....+-. ..|+|. .+..-|
T Consensus 898 ~~s~~lTa~v~~~l~~a~~~~~~v~-~~~l~~a~~~L~~~q~~d---G~f~~~~~~~~~~~~g~~~--------~~~~~t 965 (1325)
T 2pn5_A 898 NGSVFLTAFVGTSMQTAVKYISDID-AAMVEKALDWLASKQHFS---GRFDKAGAEYHKEMQGGLR--------NGVALT 965 (1325)
T ss_dssp CCCHHHHHHHHHHHHHHTTTCSCSC-HHHHHHHHHHHHHTCCTT---SCCCCCSCCSCHHHHCCSS--------TTHHHH
T ss_pred CCCeeehHHHHHHHHHHHhhEEcCC-HHHHHHHHHHHHhhhccC---CCccccccccChhhcCccc--------CCcccc
Confidence 46789999999999987 43222 588999999999999986 8875321100 013322 123347
Q ss_pred HHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccC-CCCcc
Q 048587 79 AEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQ-TGGVP 123 (150)
Q Consensus 79 a~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~-dGGW~ 123 (150)
+.+|.+|...+..+ ....+.+++|++||.+.|+. +++|+
T Consensus 966 ayvl~aL~~~g~~~------~~~~~~i~~a~~~L~~~~~~~~~~~~ 1005 (1325)
T 2pn5_A 966 SYVLMALLENDIAK------AKHAEVIQKGMTYLSNQFGSINNAYD 1005 (1325)
T ss_dssp HHHHHHHHTCHHHH------HHTHHHHHHHHHHHHHHGGGCCCHHH
T ss_pred HHHHHHHhhCcccc------cccHHHHHHHHHHHHHhhcccCCHHH
Confidence 88888876543100 01246799999999999887 88884
No 31
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=97.89 E-value=3.5e-05 Score=70.48 Aligned_cols=75 Identities=15% Similarity=0.063 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHH
Q 048587 29 PILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDA 108 (150)
Q Consensus 29 ~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~ra 108 (150)
..|++++++|++.|..| |+|+. |+ ...++...||.++.+|..+.+. + .++.+.+++|
T Consensus 299 ~~i~~g~~rll~~Q~~D---Gsfs~---------w~-----~~~~s~wlTAyv~~~l~~a~~~-----~-~v~~~~i~~a 355 (915)
T 2hr0_B 299 ELIKKGYTQQLAFRQPS---SAFAA---------FV-----KRAPSTWLTAYVVKVFSLAVNL-----I-AIDSQVLCGA 355 (915)
T ss_dssp HHHHHHHHHHGGGCCTT---TCCBS---------SS-----SSCBCHHHHHHHHHHHHTTTTT-----S-CCCHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCC---CCccc---------cC-----CCCCcceehHHHHHHHHHhhhc-----C-CCCHHHHHHH
Confidence 46888999999999987 77752 22 1235677899999999998641 2 4678999999
Q ss_pred HHHHHh-cccCCCCccccC
Q 048587 109 VNCIIS-MQSQTGGVPAWE 126 (150)
Q Consensus 109 v~wL~~-~Qn~dGGW~~~~ 126 (150)
++||++ .|++||+|....
T Consensus 356 l~~L~~~~Q~~dG~f~~~~ 374 (915)
T 2hr0_B 356 VKWLILEKQKPDGVFQEDA 374 (915)
T ss_dssp HHHHHHHHBCTTSCBCCCS
T ss_pred HHHHHHhhccCCCccccCc
Confidence 999995 999999997654
No 32
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=97.62 E-value=0.00017 Score=60.57 Aligned_cols=87 Identities=17% Similarity=0.021 Sum_probs=60.9
Q ss_pred CchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHH
Q 048587 6 SQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCC 85 (150)
Q Consensus 6 s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL 85 (150)
+..+.-||+++||+..|... -.+.+.=|+..|..+ |+ .-++|.+|.|++||
T Consensus 112 t~~Yq~sL~vLALC~~~~~v-----~~~~v~kLl~~~~~~---g~---------------------~~sVDT~AMa~LAL 162 (399)
T 2pmv_A 112 SAFYGPSLAILALCQKNSEA-----TLPIAVRFAKTLLAN---SS---------------------PFNVDTGAMATLAL 162 (399)
T ss_dssp GGGHHHHHHHHHHHHHCHHH-----HHHHHHHHHHHHHHC---CS---------------------CCCHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHcc---CC---------------------cccchHHHHHHHHH
Confidence 45688899999999998643 344444455555543 32 12799999999999
Q ss_pred HHhcCCCCcccCCCC-----CHHHHHHHHHHHHhcccCCCCcc
Q 048587 86 LYFSMLPPEIVGEKM-----EPERYYDAVNCIISMQSQTGGVP 123 (150)
Q Consensus 86 ~~~~~~~~~~~g~~~-----~~~~i~rav~wL~~~Qn~dGGW~ 123 (150)
.-+.+.- ..+... ...+|++++.+|++.|++||+||
T Consensus 163 ~C~~~~~--~~~~~~~~~~~i~~ai~~~~~~l~~~q~~dG~fG 203 (399)
T 2pmv_A 163 TCMYNKI--PVGSEEGYRSLFGQVLKDIVEKISMKIKDNGIIG 203 (399)
T ss_dssp HHHHTBC--CTTCCSSHHHHHHHHHHHHHHHHTTSBCTTSCBS
T ss_pred HHHhhcc--ccccchhhHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence 9887400 011111 25789999999999999999998
No 33
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.10 E-value=0.0011 Score=55.47 Aligned_cols=114 Identities=18% Similarity=0.119 Sum_probs=62.9
Q ss_pred CCchhHHHHHHHHHHHcCCCC-CccHHHHHHHHHHHhhcc---CCCCCCCcccccC-CCCCCccccCCCCCCCCcccchH
Q 048587 5 GSQTWDCAFAVQALLACNLTD-EIGPILMKAHDFLKTSQV---TDNPPGDFESMFR-HTSKGGWTFSNKDHGWPVSDCTA 79 (150)
Q Consensus 5 ~s~~wdTala~~AL~~aG~~~-~~~~~i~ra~~wL~~~Q~---~d~~~G~~~~~~~-~~~~GgW~fs~~~~~~pd~d~Ta 79 (150)
.+++.-|=+|+++|+-.|.+. + .-.-.+.++||.+.|. +++ |+|..... +...|.| + ..+-.|+=-|=
T Consensus 91 ~~hl~~Ty~Al~~L~ilg~~~~~-~vdr~~i~~~l~~lQ~~~~~~d--GsF~~~~~~~~~dg~~--~--~~ge~D~R~~Y 163 (390)
T 3dra_B 91 CPNLSSTLFALYNLLILKSPYHT-IINRKKIMNFLCKCQVKDGINK--GGFVPTLYYNEENGDY--K--QYGEPDLRVCY 163 (390)
T ss_dssp CCBHHHHHHHHHHHHHTTCCGGG-TCCHHHHHHHHHHHBCCSSTTT--TCBCSEEEEETTTTEE--E--EESCCCHHHHH
T ss_pred cccHHHHHHHHHHHHHhCchhhc-cccHHHHHHHHHHHhCCCCCCC--Cceeeecccccccccc--c--cCCcchHHHHH
Confidence 378999999999999887641 1 1113678899999998 522 88763210 0000100 0 01123333344
Q ss_pred HHHHHHHHhcCCC---CcccCCC--CCHHHHHHHHHHHHhcccCCCCccccC
Q 048587 80 EALLCCLYFSMLP---PEIVGEK--MEPERYYDAVNCIISMQSQTGGVPAWE 126 (150)
Q Consensus 80 ~al~aL~~~~~~~---~~~~g~~--~~~~~i~rav~wL~~~Qn~dGGW~~~~ 126 (150)
.|+..+..++... .+ .+.+ ....-++++++||+++||-|||++.-.
T Consensus 164 cA~~i~~lL~~~~~~~~~-~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~p 214 (390)
T 3dra_B 164 MALLIRHLMKYDDNNNNN-NREDSNETDIDLISLQQFILDRININGGFSSTI 214 (390)
T ss_dssp HHHHHHHHTTCC--------------CCCCHHHHHHHHHTTBCTTSCBCSST
T ss_pred HHHHHHHHhCCCcccccc-cccccccccccHHHHHHHHHHhcCCCCCcCCCC
Confidence 4444444444211 00 0000 001237899999999999999998543
No 34
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=96.85 E-value=0.011 Score=52.76 Aligned_cols=98 Identities=17% Similarity=0.094 Sum_probs=68.6
Q ss_pred chhHHHHHHHHHHHcCC----CCCc----cHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccch
Q 048587 7 QTWDCAFAVQALLACNL----TDEI----GPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCT 78 (150)
Q Consensus 7 ~~wdTala~~AL~~aG~----~~~~----~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~T 78 (150)
...-+-+++..|.+.+. .++. ...|+++++=|++.|..| |+|+- |+ ...++.=.|
T Consensus 338 ~~~p~i~v~~yl~~t~q~~~l~~~~~~~a~~~l~~gyqrll~~q~~D---Gsfs~---------w~-----~~~~s~wLT 400 (767)
T 4fxk_B 338 YLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKAD---GSYAA---------WL-----SRDSSTWLT 400 (767)
T ss_dssp GTHHHHHHHHHHHHTCTTTTSCSSHHHHHHHHHHHHHHHHTTTBCTT---SCBBS---------SS-----SSCBCHHHH
T ss_pred hhhhhhhHHHHHHhhhhhcccCHHHHHHHHHHHHHHHHHHHHhhcCC---CCccc---------CC-----CCCCCchhH
Confidence 34445667777777664 2321 233777888888889887 87752 21 112344479
Q ss_pred HHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccCC
Q 048587 79 AEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEP 127 (150)
Q Consensus 79 a~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~~ 127 (150)
|.++..|..+... ..+....+.+++.||++.|++||.|....+
T Consensus 401 AyV~~~l~~A~~~------i~id~~~i~~a~~wL~~~Q~~~G~f~e~g~ 443 (767)
T 4fxk_B 401 AFVLKVLSLAQEQ------VGGSPEKLQETSNWLLSQQQADGSFQDPCP 443 (767)
T ss_dssp HHHHHHHHHTCSS------SSCCHHHHHHHHHHHHHTBCTTSCBCCSSC
T ss_pred HHHHHHHHHHHhh------cCcchHHHHHHHHHHHHhhhhcccchhcch
Confidence 9999999998752 235788999999999999999999977654
No 35
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=96.84 E-value=0.002 Score=53.92 Aligned_cols=61 Identities=18% Similarity=0.160 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHH
Q 048587 30 ILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAV 109 (150)
Q Consensus 30 ~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav 109 (150)
.+.++++||+++|.-| |+++.. ||+ ..|+ --|-.||.+|..++. . ...+.+-+
T Consensus 192 d~~~~~~~I~~cq~yd---GGfg~~-----p~~-----EsH~----G~TfCalaaL~lL~~--------~--~~d~~~l~ 244 (390)
T 3dra_B 192 DLISLQQFILDRININ---GGFSST-----IMD-----ESHL----GFTFCAIASLKLLNY--------P--LEKLKSTK 244 (390)
T ss_dssp CHHHHHHHHHTTBCTT---SCBCSS-----TTS-----CCCH----HHHHHHHHHHHHTTC--------C--GGGCHHHH
T ss_pred cHHHHHHHHHHhcCCC---CCcCCC-----CCc-----cccc----chhHHHHHHHHHhCc--------c--cccHHHHH
Confidence 3799999999999987 887632 121 1221 126677888887763 1 13467889
Q ss_pred HHHHhccc
Q 048587 110 NCIISMQS 117 (150)
Q Consensus 110 ~wL~~~Qn 117 (150)
.||.++|.
T Consensus 245 ~WL~~RQ~ 252 (390)
T 3dra_B 245 EWLIHRQV 252 (390)
T ss_dssp HHHHTTBC
T ss_pred HHHHHcCc
Confidence 99999998
No 36
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=96.74 E-value=0.0086 Score=53.46 Aligned_cols=106 Identities=18% Similarity=0.018 Sum_probs=60.2
Q ss_pred CchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCC--------CCCCccccCCCCCCCCcccc
Q 048587 6 SQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRH--------TSKGGWTFSNKDHGWPVSDC 77 (150)
Q Consensus 6 s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~--------~~~GgW~fs~~~~~~pd~d~ 77 (150)
...+..|++..||..+|... .....+++-|...-..++....|...... ..+..+.+......-.++-.
T Consensus 509 ~~~y~~Al~ayaL~l~~~~~---~~~~~~~~~L~~~a~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEt 585 (767)
T 4fxk_B 509 LGAHAAAITAYALSLTKAPV---DLLGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIET 585 (767)
T ss_dssp CCHHHHHHHHHHHHHHTCTT---HHHHHHHHHHHTTCCBCSSCBCCCCCCCCCGGGGCCSSSCCCSSSCBCCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCcH---HHHHHHHHHHHhhcEEcCCeeEEeccCCCcccccccccccccccccccccchHHHHH
Confidence 34677788888888877542 44455566666654443211223211100 01111111110000013557
Q ss_pred hHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 048587 78 TAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPA 124 (150)
Q Consensus 78 Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~ 124 (150)
||.||++++.... ..+.+.+.+.||+.+||..|||.+
T Consensus 586 tayaLla~l~~~~----------~~~~a~~iv~WL~~Qr~~~Ggf~S 622 (767)
T 4fxk_B 586 TAYALLHLLLHEG----------KAEMADQASAWLTRQGSFQGGFRS 622 (767)
T ss_dssp HHHHHHHHHHHTS----------SCHHHHHHHHHHHHTCCTTSSCSS
T ss_pred HHHHHHHHHhcCC----------chhHHHHHHHHHHHhhcCCCCCcC
Confidence 9999999887642 345678899999999999999975
No 37
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=96.74 E-value=0.0091 Score=57.73 Aligned_cols=100 Identities=17% Similarity=0.115 Sum_probs=65.7
Q ss_pred CchhHHHHHHHHHHHcCCC--CCccHHHHHHHHHHHh-hccCCCCCCCcccc---cCCCCCCccccCCCCCCCCcccchH
Q 048587 6 SQTWDCAFAVQALLACNLT--DEIGPILMKAHDFLKT-SQVTDNPPGDFESM---FRHTSKGGWTFSNKDHGWPVSDCTA 79 (150)
Q Consensus 6 s~~wdTala~~AL~~aG~~--~~~~~~i~ra~~wL~~-~Q~~d~~~G~~~~~---~~~~~~GgW~fs~~~~~~pd~d~Ta 79 (150)
+..|-||+++..|.++..- -+ ...|.+|++||++ +|..+ |.|.+. +.....||+. ....+++..||
T Consensus 1073 ~s~wLTAyv~~~l~~A~~~~~v~-~~~l~~a~~~L~~~~q~~~---g~f~~~~~~~~~~~~gg~~----~~~~~~~~ltA 1144 (1661)
T 2b39_A 1073 PSTWLTAYVVKVFALAANLIAID-SKDLCETVKWLILEKQKPD---GIFQEDGPVIHQEMIGGFR----DTREKDVSLTA 1144 (1661)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCCC-HHHHHHHHHHHHHHTBCTT---SCBCCCSCCCCTTSCCCTT----CCTTSSHHHHH
T ss_pred CchhhhHHHHHHHHhhhhcccCC-HHHHHHHHHHhhHhhCCCC---CccccccceechhhcCCcc----ccccCccccHH
Confidence 5689999999999887432 22 6889999999995 88876 887532 1111234421 00123555689
Q ss_pred HHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhc
Q 048587 80 EALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISM 115 (150)
Q Consensus 80 ~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~ 115 (150)
.+|.+|...+.... -+.+.....+++|++||.+.
T Consensus 1145 yvl~aL~~~~~~~~--~~~~~~~~~i~~a~~yL~~~ 1178 (1661)
T 2b39_A 1145 FVLIALHEAKDICE--AQVNSLGRSIAKAGDFLENH 1178 (1661)
T ss_dssp HHHHHHHHTTTTTT--TTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccc--ccCcchhHHHHHHHHHHHHh
Confidence 99999988653210 02233567889999999765
No 38
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=96.70 E-value=0.0009 Score=60.62 Aligned_cols=83 Identities=10% Similarity=0.167 Sum_probs=54.3
Q ss_pred CCchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHH
Q 048587 5 GSQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLC 84 (150)
Q Consensus 5 ~s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~a 84 (150)
...++|||++ ||+..-.... .|.--.+++||+..|.+| |+|+. ......+-..-.|..||+|
T Consensus 53 S~S~YDTAWV--amvp~~~~~~-~p~Fp~~~~wil~nQ~~D---GsWg~------------~~~~~~~d~l~~TlAcvlA 114 (785)
T 3s9v_A 53 NPSAYDTAWV--ARIPAVDGSD-NPHFPETVEWILQNQLKD---GSWGE------------GFYFLAYDRILATLACIIT 114 (785)
T ss_dssp CCCHHHHHHH--TTSBCTTSCS-SBSSHHHHHHHHHCCCTT---SCCSC------------SSSCCHHHHHHHHHHHHHH
T ss_pred cCcHHHhhHH--hccccCCCCC-CCCchHHHHHHHHccCCC---CCCCC------------CCCCchHHHHHHHHHHHHH
Confidence 3568999994 4433211112 455678999999999997 77751 1000011114569999999
Q ss_pred HHHhcCCCCcccCCCCCHHHHHHHHHHHHhc
Q 048587 85 CLYFSMLPPEIVGEKMEPERYYDAVNCIISM 115 (150)
Q Consensus 85 L~~~~~~~~~~~g~~~~~~~i~rav~wL~~~ 115 (150)
|..-. +..++|+||+.||.+.
T Consensus 115 L~~w~----------~~~~~i~~Gl~fl~~n 135 (785)
T 3s9v_A 115 LTLWR----------TGETQVQKGIEFFRTQ 135 (785)
T ss_dssp HHHTT----------CCHHHHHHHHHHHHHH
T ss_pred HHHcc----------cCHHHHHHHHHHHHHH
Confidence 98743 3568999999999865
No 39
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=96.64 E-value=0.0019 Score=58.07 Aligned_cols=103 Identities=17% Similarity=0.210 Sum_probs=62.9
Q ss_pred CCchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHH
Q 048587 5 GSQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLC 84 (150)
Q Consensus 5 ~s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~a 84 (150)
...++|||++ ||+-.- +. .|.--.+++||+..|.+| |+|+. +++ |+. +-..-.|..|++|
T Consensus 31 S~S~YDTAWV--Amvp~~--~~-~p~Fp~~~~wil~nQ~~D---GsWG~------~~~--~~~----~D~ll~TLAcvlA 90 (727)
T 3pya_A 31 TISAYDTAWV--ALIDAG--DK-TPAFPSAVKWIAENQLSD---GSWGD------AYL--FSY----HDRLINTLACVVA 90 (727)
T ss_dssp CCCHHHHHHH--HTCBCS--SS-SBSCHHHHHHHHHTCCTT---SCCSC------SSS--CCH----HHHHHHHHHHHHH
T ss_pred cCcHHHhHHH--hhccCC--CC-CCCCHHHHHHHHhcCCCC---CCCCC------CCC--cch----hhHHHHHHHHHHH
Confidence 4568999995 544321 22 344678999999999997 77751 010 111 1124459999999
Q ss_pred HHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhccChh
Q 048587 85 CLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRRAPSWLESLNPI 140 (150)
Q Consensus 85 L~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~~~~~~~~l~~~~~~ 140 (150)
|..-. +..++|+||+.||.+.=. .|..=.....+-..|+|-|+
T Consensus 91 L~~w~----------~~~~~i~rGl~fl~~nl~---~~~~~~~~~~pvGfeiifP~ 133 (727)
T 3pya_A 91 LRSWN----------LFPHQCNKGITFFRENIG---KLEDENDEHMPIGFEVAFPS 133 (727)
T ss_dssp HHHTT----------CCHHHHHHHHHHHHHHGG---GTTCCSSCCCCTTHHHHHHH
T ss_pred HHHcc----------CCHHHHHHHHHHHHHHHH---HhhccCCCCCCceeeeeHHH
Confidence 88742 356899999999987422 12100123455566666554
No 40
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=96.56 E-value=0.0013 Score=59.36 Aligned_cols=103 Identities=16% Similarity=0.142 Sum_probs=64.7
Q ss_pred CCchhHHHHHHHHHHHcC--CCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHH
Q 048587 5 GSQTWDCAFAVQALLACN--LTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEAL 82 (150)
Q Consensus 5 ~s~~wdTala~~AL~~aG--~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al 82 (150)
...++|||++ ||+..- .... .|.--.+++||+..|.+| |+|+.. +. |+. +-..-.|..||
T Consensus 30 S~S~YDTAWV--amvp~~~~~~~~-~p~Fp~~~~wil~nQ~~D---GsWg~~------~~--~~~----~d~ll~TlAcv 91 (764)
T 3p5p_A 30 SPSAYDTAWV--ARLATISSDGSE-KPRFPQALNWVFNNQLQD---GSWGIE------SH--FSL----CDRLLNTTNSV 91 (764)
T ss_dssp CCCHHHHHHH--HHCEEECTTSCE-EESCHHHHHHHHHCCCTT---SCCSCT------TS--CCH----HHHHHHHHHHH
T ss_pred cCcHHHHHHH--HhCccccCCCCC-CCCChHHHHHHHHccCCC---CCCCCC------CC--cch----HHHHHHHHHHH
Confidence 4568999994 444331 1112 455678999999999997 777510 00 111 11344599999
Q ss_pred HHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccCCCCcchhhhccChh
Q 048587 83 LCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPRRAPSWLESLNPI 140 (150)
Q Consensus 83 ~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~~~~~~~~l~~~~~~ 140 (150)
+||..-. +..++|+||+.||.+.= .-|.. ....+-..|+|-|+
T Consensus 92 lAL~~w~----------~~~~~i~~Gl~fl~~nl---~~~~~--~~~~~vgfeiifP~ 134 (764)
T 3p5p_A 92 IALSVWK----------TGHSQVQQGAEFIAENL---RLLNE--EDELSPDFQIIFPA 134 (764)
T ss_dssp HHHHHTT----------CCHHHHHHHHHHHHHHH---TTCCT--TSCCCTTHHHHHHH
T ss_pred HHHHHcc----------CCHHHHHHHHHHHHHHH---HhhcC--CCCCCceeeeeHHH
Confidence 9988743 35689999999998753 22432 34555566766555
No 41
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=96.55 E-value=0.00037 Score=67.46 Aligned_cols=99 Identities=18% Similarity=0.119 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHHcCCC---CCccHHHHHHHHHHHh-hccCCCCCCCccccc--CCC-CCCccccCCCCCCCCcccch
Q 048587 6 SQTWDCAFAVQALLACNLT---DEIGPILMKAHDFLKT-SQVTDNPPGDFESMF--RHT-SKGGWTFSNKDHGWPVSDCT 78 (150)
Q Consensus 6 s~~wdTala~~AL~~aG~~---~~~~~~i~ra~~wL~~-~Q~~d~~~G~~~~~~--~~~-~~GgW~fs~~~~~~pd~d~T 78 (150)
+..|-||+++..|.++..- -+ ...|.++++||++ +|.+| |.|.+.- .|. -.||-. . .-.++..|
T Consensus 1057 ~stWLTAyV~k~f~~A~~~i~~Vd-~~~l~~~~~wL~~~~Q~~d---G~F~e~~~v~~~~m~Gg~~----~-~~~~~~lT 1127 (1642)
T 3prx_B 1057 SSSWLTAYVVKVFAMAAKMVAGIS-HEIICGGVRWLILNRQQPD---GAFKENAPVLSGTMQGGIQ----G-AEEEVYLT 1127 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccccHHHHHHHHHHHHhhccCCC-HHHHHHHHHHHHhhccCCC---CcccccccccchhccCCcc----C-CCCcccch
Confidence 5789999999999887431 12 4789999999998 78776 8886431 111 133311 0 01356789
Q ss_pred HHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhc
Q 048587 79 AEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISM 115 (150)
Q Consensus 79 a~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~ 115 (150)
|.++.||+..+.... ...+....++++|++||.+.
T Consensus 1128 A~vliaL~e~~~~~~--~~~~~~~~~i~~a~~~L~~~ 1162 (1642)
T 3prx_B 1128 AFILVALLESKTICN--DYVNSLDSSIKKATNYLLKK 1162 (1642)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHhcccccc--cccccchHHHHHHHHHHHHh
Confidence 999999998753210 01123456899999999864
No 42
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=96.53 E-value=0.0016 Score=59.24 Aligned_cols=105 Identities=15% Similarity=0.146 Sum_probs=63.9
Q ss_pred CCchhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHH
Q 048587 5 GSQTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLC 84 (150)
Q Consensus 5 ~s~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~a 84 (150)
...++|||++ ||+..-.... .+.--.+++||+..|.+| |+|+.. +. |+. +-..-.|..||+|
T Consensus 80 S~S~YDTAWV--Amvp~~~~~~-~p~Fp~~~~wil~nQ~~D---GsWg~~------~~--~~~----~d~ll~TlAcvlA 141 (817)
T 3sdr_A 80 TPSAYDTAWV--ARVPAIDGSA-RPQFPQTVDWILKNQLKD---GSWGIQ------SH--FLL----SDRLLATLSCVLV 141 (817)
T ss_dssp CCCHHHHHHH--HTCBCTTSCS-SBSSHHHHHHHHHCCCTT---SCCSCT------TC--CCH----HHHHHHHHHHHHH
T ss_pred ccCHHHhhHH--heeecCCCCC-CCCchHHHHHHHHccCCC---CCCCCC------CC--cch----HHHHHHHHHHHHH
Confidence 3568999994 4443311112 455678999999999997 777510 00 111 1134459999999
Q ss_pred HHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccC-CCCccccCCCCcchhhhccChh
Q 048587 85 CLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQ-TGGVPAWEPRRAPSWLESLNPI 140 (150)
Q Consensus 85 L~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~-dGGW~~~~~~~~~~~l~~~~~~ 140 (150)
|..-. +..++|+||+.||.+.=.. +.-+ .....+-..|+|-|+
T Consensus 142 L~~w~----------~~~~~i~~Gl~fl~~nl~~~~~~~---~~~~~~vgfeiifP~ 185 (817)
T 3sdr_A 142 LLKWN----------VGDLQVEQGIEFIKSNLELVKDET---DQDSLVTDFEIIFPS 185 (817)
T ss_dssp HHHTT----------CCHHHHHHHHHHHHHHHTTCCSGG---GSCSCCTTHHHHHHH
T ss_pred HHHcc----------CCHHHHHHHHHHHHHHHHHhhccc---ccCCCCcceeeeHHH
Confidence 88743 3568999999999975322 1111 133455566666554
No 43
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=96.07 E-value=0.016 Score=56.13 Aligned_cols=72 Identities=13% Similarity=0.022 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHH
Q 048587 31 LMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVN 110 (150)
Q Consensus 31 i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~ 110 (150)
|+.+++=+++.|..| |+|+-+ ....++.=.||.++..|..+.+. + .++...+.+|++
T Consensus 1049 i~~g~~r~l~~q~~d---Gsfs~w--------------~~~~~s~wLTAyv~~~l~~A~~~-----~-~v~~~~l~~a~~ 1105 (1676)
T 3cu7_A 1049 LKEGMLSIMSYRNAD---YSYSVW--------------KGGSASTWLTAFALRVLGQVNKY-----V-EQNQNSICNSLL 1105 (1676)
T ss_dssp HHHHHHHGGGGBCTT---SCBCSS--------------SSSCCCHHHHHHHHHHHHHHHTT-----S-CCCHHHHHHHHH
T ss_pred HHHHHHHHhhccCCC---CCcccc--------------CCCCCcEEEeHHHHHHHHHHHhc-----c-cCCHHHHHHHHH
Confidence 333444455677765 776522 11234555799999999998752 2 578899999999
Q ss_pred HHHh-cccCCCCcccc
Q 048587 111 CIIS-MQSQTGGVPAW 125 (150)
Q Consensus 111 wL~~-~Qn~dGGW~~~ 125 (150)
||.+ .|++||.|..-
T Consensus 1106 ~L~~~~q~~~g~f~~~ 1121 (1676)
T 3cu7_A 1106 WLVENYQLDNGSFKEN 1121 (1676)
T ss_dssp HHHHHSBCTTSCBCCC
T ss_pred HHHHhhCCCCCcccCC
Confidence 9999 99999998653
No 44
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=95.89 E-value=0.024 Score=54.80 Aligned_cols=73 Identities=12% Similarity=0.049 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHH
Q 048587 30 ILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAV 109 (150)
Q Consensus 30 ~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav 109 (150)
.|+.+++=|++.|..| |+|+ -|+ + ..++.=.||.++..|..+.+. + .++...+.+|+
T Consensus 1047 ~i~~g~~r~l~~q~~d---Gsfs---------~w~----~-~~~s~wLTAyv~~~l~~A~~~-----~-~v~~~~l~~a~ 1103 (1661)
T 2b39_A 1047 LIRKGYTQQLAFRQKS---SAYA---------AFQ----Y-RPPSTWLTAYVVKVFALAANL-----I-AIDSKDLCETV 1103 (1661)
T ss_dssp HHHHHHHHHHTTBCTT---SCBC---------SST----T-SCCCHHHHHHHHHHHHHHTTT-----S-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCC---CCcc---------ccC----C-CCCchhhhHHHHHHHHhhhhc-----c-cCCHHHHHHHH
Confidence 4566777777888886 7775 232 1 123455799999999998742 2 47889999999
Q ss_pred HHHHh-cccCCCCcccc
Q 048587 110 NCIIS-MQSQTGGVPAW 125 (150)
Q Consensus 110 ~wL~~-~Qn~dGGW~~~ 125 (150)
+||.+ .|+.||.|...
T Consensus 1104 ~~L~~~~q~~~g~f~~~ 1120 (1661)
T 2b39_A 1104 KWLILEKQKPDGIFQED 1120 (1661)
T ss_dssp HHHHHHTBCTTSCBCCC
T ss_pred HHhhHhhCCCCCccccc
Confidence 99995 99999999653
No 45
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=95.74 E-value=0.024 Score=54.83 Aligned_cols=100 Identities=19% Similarity=0.154 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCC---CcccccCCCCCCccccCCCCCCCCcccchHHHHHH
Q 048587 8 TWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPG---DFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLC 84 (150)
Q Consensus 8 ~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G---~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~a 84 (150)
....|++..||..+|... ....++++.|++....++..+ .|..........+|.. ....++-.||.+|++
T Consensus 1185 ~y~~A~lA~Al~l~g~~~---~~a~~~l~~L~~~a~~~~~~~~~~~w~~~~~~~~~~~~~~----~~~~~ve~tayaLla 1257 (1676)
T 3cu7_A 1185 TFTLAISAYALSLGDKTH---PQFRSIVSALKREALVKGNPPIYRFWKDNLQHKDSSVPNT----GTARMVETTAYALLT 1257 (1676)
T ss_dssp HHHHHHHHHHHTTSCTTC---HHHHHHHHHHHHHCEEETTTTSEEECCSCSSCCSSCCCSC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCch---hhHHHHHHHHHhhhhhccCCccccCCCCCCCCccccccCC----CccchHHHHHHHHHH
Confidence 355566666676667542 225666777877666432112 2321100000001110 000155679999999
Q ss_pred HHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 048587 85 CLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAW 125 (150)
Q Consensus 85 L~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~ 125 (150)
|+..+ ..+.+.+.++||+..||.+|||.+.
T Consensus 1258 ll~~~-----------~~~~~~~iv~wL~~qr~~~Gg~~ST 1287 (1676)
T 3cu7_A 1258 SLNLK-----------DINYVNPVIKWLSEEQRYGGGFYST 1287 (1676)
T ss_dssp HHHTT-----------CHHHHHHHHHHHHHHSCSSSCCSTT
T ss_pred HHhcC-----------ChhHHHHHHHHHHhccCCCCCcccc
Confidence 98864 3456788899999999999999764
No 46
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=95.22 E-value=0.0032 Score=61.01 Aligned_cols=75 Identities=13% Similarity=0.033 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHH
Q 048587 30 ILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAV 109 (150)
Q Consensus 30 ~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav 109 (150)
.|+++++=+++.|..| |+|+. |+-+ .++.=.||.+++.|..+.+. +-.++...+.+++
T Consensus 1031 ~i~~Gyqr~l~yq~~D---Gsfs~---------w~~~-----~~stWLTAyV~k~f~~A~~~-----i~~Vd~~~l~~~~ 1088 (1642)
T 3prx_B 1031 QIVTGYAQQMVYKKAD---HSYAA---------FTNR-----ASSSWLTAYVVKVFAMAAKM-----VAGISHEIICGGV 1088 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcCCC---CCeec---------CCCC-----CCccccHHHHHHHHHHHHhh-----ccCCCHHHHHHHH
Confidence 3555666666677765 77652 2211 12223699999999988742 2236788999999
Q ss_pred HHHHh-cccCCCCccccC
Q 048587 110 NCIIS-MQSQTGGVPAWE 126 (150)
Q Consensus 110 ~wL~~-~Qn~dGGW~~~~ 126 (150)
+||++ .|++||.|..-.
T Consensus 1089 ~wL~~~~Q~~dG~F~e~~ 1106 (1642)
T 3prx_B 1089 RWLILNRQQPDGAFKENA 1106 (1642)
T ss_dssp ------------------
T ss_pred HHHHhhccCCCCcccccc
Confidence 99998 899999997654
No 47
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=92.51 E-value=0.28 Score=45.56 Aligned_cols=89 Identities=21% Similarity=0.148 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhc-cCCCCCCCcccccC-CCCCCccccCCCCCCCCcccchHHHHHHH
Q 048587 8 TWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQ-VTDNPPGDFESMFR-HTSKGGWTFSNKDHGWPVSDCTAEALLCC 85 (150)
Q Consensus 8 ~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q-~~d~~~G~~~~~~~-~~~~GgW~fs~~~~~~pd~d~Ta~al~aL 85 (150)
+.|++++++||+..|.. +..++.++||.+.| .++ |.+...|. +..++ |. .+..|.|+..|.++
T Consensus 331 ~RDaa~t~~all~~G~~----e~A~~~l~~L~~~Q~~~~---G~~~~~y~i~G~~~-w~-------~~Q~D~~g~~l~~~ 395 (1020)
T 1ulv_A 331 ARDMYQSVTALLAAGDE----EAAARGVEWLFTYQQQPD---GHFPQTSRVDGTIG-QN-------GIQLDETAFPILLA 395 (1020)
T ss_dssp HHHHHHHHHHHHHHTCH----HHHHHHHHHHHHHTCCTT---SCCCSCBCTTSCBC-CC-------CCBTHHHHHHHHHH
T ss_pred cchHHHHHHHHHHcCCH----HHHHHHHHHHHHHhcCCC---CCeeeEEecCCCcC-CC-------CccCccchHHHHHH
Confidence 37999999999999964 56889999999999 543 77765442 22211 11 25789999999999
Q ss_pred HHhcCCCCcccCCCCCHHHHHHHHHHHHhcc
Q 048587 86 LYFSMLPPEIVGEKMEPERYYDAVNCIISMQ 116 (150)
Q Consensus 86 ~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Q 116 (150)
..+.+. +...-.+.|+++++|+...-
T Consensus 396 ~~~~~~-----d~~~w~~~v~~al~~i~~~g 421 (1020)
T 1ulv_A 396 NQIGRT-----DAGFYRNELKPAADYLVAAG 421 (1020)
T ss_dssp HHHTCC-----CHHHHHHTHHHHHHHHHHHC
T ss_pred HHHHhc-----CHHHHHHHHHHHHHHHHHhC
Confidence 887531 11111127999999999873
No 48
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=92.28 E-value=0.21 Score=41.04 Aligned_cols=102 Identities=12% Similarity=-0.004 Sum_probs=64.2
Q ss_pred chhHHHHHHHHHHHcCC---CCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCC-----Ccccch
Q 048587 7 QTWDCAFAVQALLACNL---TDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGW-----PVSDCT 78 (150)
Q Consensus 7 ~~wdTala~~AL~~aG~---~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~-----pd~d~T 78 (150)
.+|++++.+.+++.+.. .+++.+.++++++||++.-...+ .|+| .++. ..|- ...++-
T Consensus 50 ~l~~n~r~i~~~a~a~~~~g~~~~l~~A~~~~~fl~~~~~d~~-~Gg~------------~~~~-~dG~~~~~~~~lyd~ 115 (402)
T 3gt5_A 50 HLVSSTRFVFNYAMAYLQFGTAEYLDAVHHGLSYVRDVHRNPA-TGGY------------AWTL-CDDRVEDDTNHCYGL 115 (402)
T ss_dssp EHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTBCTT-TSCB------------CSEE-ETTEEEECCEEHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHhCccCC-CCcE------------EEEe-eCCCCCcCCcchHHH
Confidence 47999999999987642 34577889999999998533210 1443 3333 2221 245778
Q ss_pred HHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhc-ccCC-CCcc-ccCC
Q 048587 79 AEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISM-QSQT-GGVP-AWEP 127 (150)
Q Consensus 79 a~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~-Qn~d-GGW~-~~~~ 127 (150)
|.++.||..+.. .|++...+..++..++|... ..+. ||+- ++.+
T Consensus 116 Af~i~al~~~~~-----tgd~~~l~~A~~l~~~i~~~f~d~~~G~~~~~~~~ 162 (402)
T 3gt5_A 116 AFVMLAYSCGLK-----VGIKQAREWMDETWCLLERHFWDAEYGLYKDEADA 162 (402)
T ss_dssp HHHHHHHHHHHH-----TTCTTHHHHHHHHHHHHHHHTEETTTTEECCEECT
T ss_pred HHHHHHHHHHHH-----hCChhHHHHHHHHHHHHHHHhcCCcCCCchhhhCC
Confidence 999999988542 34555556666677777764 3443 5543 3543
No 49
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=91.73 E-value=0.29 Score=43.30 Aligned_cols=85 Identities=13% Similarity=0.116 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCccc-ccCCCCCCccccCCCCCCCCcccchHHHHHHHHH
Q 048587 9 WDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFES-MFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLY 87 (150)
Q Consensus 9 wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~-~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~ 87 (150)
-|.+++++||+..|.. +..++.++||.+.|.++ |.+.. ++.+ |. ++ -+.+..|.|+..|.++..
T Consensus 343 RD~~~~~~al~~~G~~----~~a~~~l~~l~~~q~~~---G~~~~~~~~~---G~-p~----w~~~Q~D~~g~~l~~~~~ 407 (684)
T 1lf6_A 343 RDLYHVANAFIAAGDV----DSANRSLDYLAKVVKDN---GMIPQNTWIS---GK-PY----WTGIQLDEQADPIILSYR 407 (684)
T ss_dssp HHHHHHHHHHHHHTCH----HHHHHHHHHHHHHHHHH---SSCCSCBCTT---SC-BC----CCCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCCH----HHHHHHHHHHHhhcCCC---CCcccceeCC---CC-cc----cCCccccchHHHHHHHHH
Confidence 6899999999999953 56889999999999875 77642 2322 22 11 123678999999998876
Q ss_pred hcCCCCcccCCCCCHHH-HHHHHHHHHhcc
Q 048587 88 FSMLPPEIVGEKMEPER-YYDAVNCIISMQ 116 (150)
Q Consensus 88 ~~~~~~~~~g~~~~~~~-i~rav~wL~~~Q 116 (150)
+.+ .| .-+. |+++++|+...-
T Consensus 408 ~~~-----~g---~~~~~v~~al~~i~~~~ 429 (684)
T 1lf6_A 408 LKR-----YD---LYDSLVKPLADFIIKIG 429 (684)
T ss_dssp TTC-----GG---GTTTTHHHHHHHHHHHC
T ss_pred HHH-----cC---chHHHHHHHHHHHHHhC
Confidence 643 23 2356 999999999864
No 50
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=91.33 E-value=0.13 Score=41.64 Aligned_cols=103 Identities=15% Similarity=0.075 Sum_probs=57.6
Q ss_pred chhHHHHHHHHHHHcCC----CCCccHHHHHHHHHHHhhccCCCCCCCccccc-CCCCCCccccCCCCCCCCcccchHHH
Q 048587 7 QTWDCAFAVQALLACNL----TDEIGPILMKAHDFLKTSQVTDNPPGDFESMF-RHTSKGGWTFSNKDHGWPVSDCTAEA 81 (150)
Q Consensus 7 ~~wdTala~~AL~~aG~----~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~-~~~~~GgW~fs~~~~~~pd~d~Ta~a 81 (150)
.+|+.++.+.+++.+.. .+++.+.++++++||++.-... .|+|.... ++ |... . ......+-|.+
T Consensus 51 ~l~~nar~i~~~a~a~~~~~~~~~~~~~A~~~~~~l~~~~~~~--~Gg~~~~~d~d---g~~~----~-~~~~~~~~af~ 120 (388)
T 2gz6_A 51 FIWLQNRQVWTFSMLCNQLEKRENWLKIARNGAKFLAQHGRDD--EGNWYFALTRG---GEPL----V-QPYNIFSDCFA 120 (388)
T ss_dssp EHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHSBCT--TSCBCSEECTT---SCBC----C-CCCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCC--CCCEEEEEcCC---CCcc----c-CCcchHHHHHH
Confidence 47899999999987533 2457888999999999974432 26664321 22 1100 0 01345678899
Q ss_pred HHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhccc-CCCCcc
Q 048587 82 LLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQS-QTGGVP 123 (150)
Q Consensus 82 l~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn-~dGGW~ 123 (150)
+.||..+.+ ..|++...+..++..++++.... ++|.|.
T Consensus 121 i~al~~~y~----~tg~~~~l~~A~~~~~~i~~~~~d~~g~~~ 159 (388)
T 2gz6_A 121 AMAFSQYAL----ASGEEWAKDVAMQAYNNVLRRKDNPKGKYT 159 (388)
T ss_dssp HHHHHHHHH----HHCCHHHHHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHH----HhCCHHHHHHHHHHHHHHHHHhcCCCcccC
Confidence 999887542 12333333445556667776553 345443
No 51
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=90.62 E-value=0.046 Score=49.69 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=28.6
Q ss_pred CcccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 048587 73 PVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPA 124 (150)
Q Consensus 73 pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~ 124 (150)
|.+-|||++ |+ +.... | ...+.-..+++||+..|.+|||||.
T Consensus 81 ~S~YDTAWV--Am--vp~~~----~--~~~p~Fp~~~~wil~nQ~~DGsWg~ 122 (817)
T 3sdr_A 81 PSAYDTAWV--AR--VPAID----G--SARPQFPQTVDWILKNQLKDGSWGI 122 (817)
T ss_dssp CCHHHHHHH--HT--CBCTT----S--CSSBSSHHHHHHHHHCCCTTSCCSC
T ss_pred cCHHHhhHH--he--eecCC----C--CCCCCchHHHHHHHHccCCCCCCCC
Confidence 566799994 32 22111 1 1234457889999999999999996
No 52
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=90.33 E-value=0.043 Score=49.67 Aligned_cols=42 Identities=19% Similarity=0.238 Sum_probs=28.3
Q ss_pred CcccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 048587 73 PVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPA 124 (150)
Q Consensus 73 pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~ 124 (150)
|.+-|||++ |++ .... | ...+.-..+++||+..|.+|||||.
T Consensus 54 ~S~YDTAWV--amv--p~~~----~--~~~p~Fp~~~~wil~nQ~~DGsWg~ 95 (785)
T 3s9v_A 54 PSAYDTAWV--ARI--PAVD----G--SDNPHFPETVEWILQNQLKDGSWGE 95 (785)
T ss_dssp CCHHHHHHH--TTS--BCTT----S--CSSBSSHHHHHHHHHCCCTTSCCSC
T ss_pred CcHHHhhHH--hcc--ccCC----C--CCCCCchHHHHHHHHccCCCCCCCC
Confidence 556689994 222 2111 1 1234557889999999999999995
No 53
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*
Probab=90.24 E-value=0.46 Score=39.22 Aligned_cols=100 Identities=12% Similarity=0.028 Sum_probs=65.0
Q ss_pred CchhHHHHHHHHHHHcCCC--CCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCC----CCcccchH
Q 048587 6 SQTWDCAFAVQALLACNLT--DEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHG----WPVSDCTA 79 (150)
Q Consensus 6 s~~wdTala~~AL~~aG~~--~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~----~pd~d~Ta 79 (150)
-.+|++++.+.+++.++.. +++.+.+.++++||++. ..|...|+|. ++....+ --...+-|
T Consensus 48 k~~~~nar~i~~~a~a~~~g~~~~l~~A~~~~~fl~~~-~~D~~~GG~~------------~s~d~dg~~~~~k~lyd~A 114 (421)
T 2zbl_A 48 THLWITARMLHVYSVAASMGRPGAYDLVDHGIKAMNGA-LRDKKYGGWY------------ACVNDQGVVDASKQGYQHF 114 (421)
T ss_dssp EEHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHTTT-TBCTTTSSBC------------SEEETTEEEECCEEHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHh-ccCcCCCeEE------------EEeCCCCCcCCchhHHHHH
Confidence 3579999999999887542 35678899999999987 4331114443 3321111 12345678
Q ss_pred HHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHh-cccC-CCCcc
Q 048587 80 EALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIIS-MQSQ-TGGVP 123 (150)
Q Consensus 80 ~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~-~Qn~-dGGW~ 123 (150)
+++.+|.... ..|.+...+.+++.++++.. +..+ .|||-
T Consensus 115 f~i~al~~~~-----~tg~~~~l~~a~~~~~~l~~~~~d~~~Ggf~ 155 (421)
T 2zbl_A 115 FALLGAASAV-----TTGHPEARKLLDYTIEVIEKYFWSEEEQMCL 155 (421)
T ss_dssp HHHHHHHHHH-----TTTCTTHHHHHHHHHHHHHHHTEETTTTEEC
T ss_pred HHHHHHHHHH-----HhCCccHHHHHHHHHHHHHHHhccCCCCCee
Confidence 8888888742 23555567777888888886 4455 67764
No 54
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=90.02 E-value=0.049 Score=49.20 Aligned_cols=44 Identities=27% Similarity=0.189 Sum_probs=28.6
Q ss_pred CcccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 048587 73 PVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPA 124 (150)
Q Consensus 73 pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~ 124 (150)
|.+-|||++ |++.-.... | ...+.-..+++||+..|.+|||||.
T Consensus 31 ~S~YDTAWV--amvp~~~~~----~--~~~p~Fp~~~~wil~nQ~~DGsWg~ 74 (764)
T 3p5p_A 31 PSAYDTAWV--ARLATISSD----G--SEKPRFPQALNWVFNNQLQDGSWGI 74 (764)
T ss_dssp CCHHHHHHH--HHCEEECTT----S--CEEESCHHHHHHHHHCCCTTSCCSC
T ss_pred CcHHHHHHH--HhCccccCC----C--CCCCCChHHHHHHHHccCCCCCCCC
Confidence 556699994 332211001 0 1234566889999999999999995
No 55
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=89.69 E-value=0.055 Score=48.61 Aligned_cols=41 Identities=17% Similarity=-0.044 Sum_probs=27.9
Q ss_pred CcccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 048587 73 PVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAW 125 (150)
Q Consensus 73 pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~ 125 (150)
|.+-|||++ |+ +.. + .|. +.-..+++||+..|.+|||||..
T Consensus 32 ~S~YDTAWV--Am--vp~-~---~~~----p~Fp~~~~wil~nQ~~DGsWG~~ 72 (727)
T 3pya_A 32 ISAYDTAWV--AL--IDA-G---DKT----PAFPSAVKWIAENQLSDGSWGDA 72 (727)
T ss_dssp CCHHHHHHH--HT--CBC-S---SSS----BSCHHHHHHHHHTCCTTSCCSCS
T ss_pred CcHHHhHHH--hh--ccC-C---CCC----CCCHHHHHHHHhcCCCCCCCCCC
Confidence 456689994 33 221 1 122 33567899999999999999964
No 56
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=87.39 E-value=0.47 Score=40.21 Aligned_cols=112 Identities=13% Similarity=0.181 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHcCC---CCCccHHHHHHHHHHHhh------ccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchH
Q 048587 9 WDCAFAVQALLACNL---TDEIGPILMKAHDFLKTS------QVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTA 79 (150)
Q Consensus 9 wdTala~~AL~~aG~---~~~~~~~i~ra~~wL~~~------Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta 79 (150)
|.-++.+.+|..+.. +++|.+.+++.++||... +...+ |.....+++ + + .+ .-.|+.+
T Consensus 82 y~~Gv~l~gl~~ay~~Tgd~kY~~ya~~~~dfi~~~~p~~~~~~~~~--G~l~~~~r~----~--~--~~---~~LDD~g 148 (445)
T 3k11_A 82 YEWGVTYSALIAAAETTGDKRYTDYVQNRFRFLAEVAPHFKRVYEEK--GKTDSQLLQ----I--L--TP---HALDDAG 148 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHH----H--H--SC---CSGGGTH
T ss_pred cCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhccchhhhhhhcc--CCeeccccc----c--c--CC---CcchhHH
Confidence 888999999988754 234778889999988752 22211 443211111 0 1 11 2367788
Q ss_pred HHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcc--cCCCCccccCCCCcchhhhcc
Q 048587 80 EALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQ--SQTGGVPAWEPRRAPSWLESL 137 (150)
Q Consensus 80 ~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Q--n~dGGW~~~~~~~~~~~l~~~ 137 (150)
..+.+|+.+-+ ..+.+...+.+.+..+||+..| +++||+--........|+.-+
T Consensus 149 ~~~~~Li~lY~----~T~d~~yl~~a~~~ad~L~~~~pRt~~Ggf~h~~~~~~q~WiD~l 204 (445)
T 3k11_A 149 AVCTAMIKLRL----KDESLPVDGLIQNYFDFIINKEYRLADGTFARNRPQRNTLWLDDM 204 (445)
T ss_dssp HHHHHHHHHHH----HCTTCCCHHHHHHHHHHHHHTSCBCTTCCBCBCSSSTTEEETHHH
T ss_pred HHHHHHHHHHH----hcCCHHHHHHHHHHHHHHHHcCCCCCCCceeecCCCCCceEecch
Confidence 77777776642 2245567899999999999998 568998865555566666654
No 57
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=87.00 E-value=2.2 Score=34.68 Aligned_cols=101 Identities=13% Similarity=0.091 Sum_probs=61.0
Q ss_pred chhHH--HHHHHHHHHc-CCCC-------CccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCccc
Q 048587 7 QTWDC--AFAVQALLAC-NLTD-------EIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSD 76 (150)
Q Consensus 7 ~~wdT--ala~~AL~~a-G~~~-------~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d 76 (150)
..|.. ++++.+|.+. ...| ++-+..++.+++|++.|.+++ |.|.. ..+. +.+ ...+++++
T Consensus 209 ~~WaRg~gW~~~gl~~~l~~lp~~~~~~~~~~~~~~~~a~~l~~~q~~~d--G~W~~-~ld~--~~~-----~~~~~EsS 278 (373)
T 1nc5_A 209 EFWARSIGWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSICRYQDKET--GLWYQ-IVDK--GDR-----SDNWLESS 278 (373)
T ss_dssp CCBHHHHHHHHHHHHHHGGGSCTTCHHHHHHHHHHHHHHHHHHTTSCTTT--SCCBS-BTTC--TTS-----TTCCBCHH
T ss_pred CcccchHhHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhcCCCC--Cceee-ecCC--CCC-----CCCCcccc
Confidence 35544 4467777654 2211 255667888999999998632 77752 1111 111 12357888
Q ss_pred chHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhc---ccCCC
Q 048587 77 CTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISM---QSQTG 120 (150)
Q Consensus 77 ~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~---Qn~dG 120 (150)
.||...-+|+.+.+.. .+. +...++++|+.+.|.+. .++||
T Consensus 279 atA~~ay~l~~g~~~g--~l~-~~Y~~~a~k~~~~l~~~~~~~~~dG 322 (373)
T 1nc5_A 279 GSCLYMYAIAKGINKG--YLD-RAYETTLLKAYQGLIQHKTETSEDG 322 (373)
T ss_dssp HHHHHHHHHHHHHHHT--SSC-GGGHHHHHHHHHHHHHHHEEECTTS
T ss_pred HHHHHHHHHHHHHHCC--CCc-HHHHHHHHHHHHHHHHhceeECCCC
Confidence 8888888877652110 011 24678899999999883 57888
No 58
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=86.46 E-value=1.2 Score=39.23 Aligned_cols=82 Identities=10% Similarity=0.170 Sum_probs=50.4
Q ss_pred CCccHHHHHHHHHHHhhccCCCCCCCccccc----C--CCCCCccccCCCCCCCCcccchHHHHHHHHHhcCCCCcccCC
Q 048587 25 DEIGPILMKAHDFLKTSQVTDNPPGDFESMF----R--HTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGE 98 (150)
Q Consensus 25 ~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~----~--~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~ 98 (150)
..+.+.+.+++.-|+.++.+. +.|...... + ......|.|.+. | .=|++.++++|+.++
T Consensus 292 ~~~~~~~~rs~~~Lk~l~~~~-~~G~iiAs~t~~~~e~~~~~~~~dY~~~---W--~RD~~~~~~al~~~G--------- 356 (684)
T 1lf6_A 292 GKANSLYYNSMMILKASEDKT-NKGAYIASLSIPWGDGQRDDNTGGYHLV---W--SRDLYHVANAFIAAG--------- 356 (684)
T ss_dssp TTCCHHHHHHHHHHHTTBCSS-STTCBCSCSSCTTGGGSBSBSCCGGGSB---C--HHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHHHHHHHhccCCC-CCccEEeecCCCCccccCCCCCCCCEEE---e--ccHHHHHHHHHHHcC---------
Confidence 345677888888888777631 236542110 0 000122333221 1 125677888888876
Q ss_pred CCCHHHHHHHHHHHHhcccCCCCcc
Q 048587 99 KMEPERYYDAVNCIISMQSQTGGVP 123 (150)
Q Consensus 99 ~~~~~~i~rav~wL~~~Qn~dGGW~ 123 (150)
..+..++.++||.+.|+++|+|.
T Consensus 357 --~~~~a~~~l~~l~~~q~~~G~~~ 379 (684)
T 1lf6_A 357 --DVDSANRSLDYLAKVVKDNGMIP 379 (684)
T ss_dssp --CHHHHHHHHHHHHHHHHHHSSCC
T ss_pred --CHHHHHHHHHHHHhhcCCCCCcc
Confidence 35677899999999999999984
No 59
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Probab=85.78 E-value=0.64 Score=38.40 Aligned_cols=106 Identities=13% Similarity=0.066 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHHHcCC---CCCccHHHHHHHHHHHhhccCCCCCCCccc-ccCCCCCCccccCCCCCCCCcccch-----
Q 048587 8 TWDCAFAVQALLACNL---TDEIGPILMKAHDFLKTSQVTDNPPGDFES-MFRHTSKGGWTFSNKDHGWPVSDCT----- 78 (150)
Q Consensus 8 ~wdTala~~AL~~aG~---~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~-~~~~~~~GgW~fs~~~~~~pd~d~T----- 78 (150)
+=||.+.+.+|..++. +++|.+...++++++++...+++ |.... .+-++..|.+-.....+|+ .|+.
T Consensus 147 iID~mmni~~L~~A~~~~gd~~y~~~A~~~a~~~l~~~~r~d--gs~~h~~~~D~~tG~~~~~~t~qG~--~dds~WaRG 222 (377)
T 2ahf_A 147 IIDCLLNLPLLLWAGEQTGDPEYRRVAEAHALKSRRFLVRGD--DSSYHTFYFDPENGNAIRGGTHQGN--TDGSTWTRG 222 (377)
T ss_dssp EGGGGGGHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHTBBTT--SCBCSEEEECTTTCCEEEEECSSSS--STTSCBHHH
T ss_pred EechHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCcCCC--CCeEEEEEeeCCCCCeeeCCCcCCc--CCcchhHHH
Confidence 3477777778875533 35678888899999999887643 54432 2323334443111112333 3455
Q ss_pred -HHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCC
Q 048587 79 -AEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGG 121 (150)
Q Consensus 79 -a~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGG 121 (150)
|+++.+|..+-+. .+++..-+.-++..++++.....||+
T Consensus 223 qAw~i~gl~~ly~~----T~d~~yL~~A~~la~~~l~~~~~d~~ 262 (377)
T 2ahf_A 223 QAWGIYGFALNSRY----LGNADLLETAKRMARHFLARVPEDGV 262 (377)
T ss_dssp HHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTCCTTSS
T ss_pred HHHHHHHHHHHHHH----HCChHHHHHHHHHHHHHHHhhHHhCC
Confidence 9999999887431 12222223445557888888866777
No 60
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=85.34 E-value=4.5 Score=33.12 Aligned_cols=81 Identities=17% Similarity=0.094 Sum_probs=56.0
Q ss_pred ccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHHHhcCCCCcccCCCCCHHHHH
Q 048587 27 IGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYY 106 (150)
Q Consensus 27 ~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~ 106 (150)
+-+.+++.+++|++.|.++ |.|.. ..+. +..+++++.||...-||+...+.. .+. +...++.+
T Consensus 261 ~~~~~~~~a~~~~~~q~~~---G~W~~-~~d~----------~~~y~EsSatA~~ay~ll~~~~~g--~l~-~~Y~~~a~ 323 (382)
T 3pmm_A 261 LITVLDAQIAALAECQDDS---GLWHT-LLDD----------PHSYLEASATAGFAYGILKAVRKR--YVG-QHYAGVAE 323 (382)
T ss_dssp HHHHHHHHHHHHHHHCCTT---SCEES-BTTC----------TTSCEEHHHHHHHHHHHHHHHHTT--SSC-GGGHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCC---CChhh-ccCC----------CCCCccccHHHHHHHHHHHHHHcC--CCc-HHHHHHHH
Confidence 4567889999999999865 77752 1111 113678888888888877754311 111 23578899
Q ss_pred HHHHHHHhcccCCCCccc
Q 048587 107 DAVNCIISMQSQTGGVPA 124 (150)
Q Consensus 107 rav~wL~~~Qn~dGGW~~ 124 (150)
|+.+-|.+.-++||-..-
T Consensus 324 ka~~~l~~~i~~dG~l~~ 341 (382)
T 3pmm_A 324 KAIRGIVQNISPQGELLQ 341 (382)
T ss_dssp HHHHHHHHTBCTTSCBCS
T ss_pred HHHHHHHhhCCCCCCEeC
Confidence 999999999999986643
No 61
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=85.01 E-value=3.1 Score=36.34 Aligned_cols=114 Identities=18% Similarity=0.151 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHH----HcCCCCCccHHHHHHHHHHHh---hccCCCCCCCcccc----cCCCCCCccccCCCCCCCCccc
Q 048587 8 TWDCAFAVQALL----ACNLTDEIGPILMKAHDFLKT---SQVTDNPPGDFESM----FRHTSKGGWTFSNKDHGWPVSD 76 (150)
Q Consensus 8 ~wdTala~~AL~----~aG~~~~~~~~i~ra~~wL~~---~Q~~d~~~G~~~~~----~~~~~~GgW~fs~~~~~~pd~d 76 (150)
+-|.+++++||+ ..|. .+..++..+||.. .|...++.|.|... -+.-...|..|. ..-+.|..|
T Consensus 52 ~RDaa~t~~aL~~~~~~~G~----~~~a~~~~~~l~~~~~lQ~~y~~~G~~~~~~~l~E~~~~ldG~~~~-~~w~~~Q~D 126 (599)
T 2vn4_A 52 TRDSALVFKNLIDRFTETYD----AGLQRRIEQYITAQVTLQGLSNPSGSLADGSGLGEPKFELTLKPFT-GNWGRPQRD 126 (599)
T ss_dssp HHHHHHHHHHHHHHHHHSBC----HHHHHHHHHHHHHHHHHHHCCBTTBCSTTSGGGGCCEECTTSCBCC-SCCSCCCTH
T ss_pred hhhHHHHHHHHHHHHHhCCC----HHHHHHHHHHHhcccceeeeeCCCCCcccccCcCceEEecCCcccc-CcCCCeecc
Confidence 469999999999 8785 3567889999974 66433334776310 000011222221 111246777
Q ss_pred c-----hHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccCCC
Q 048587 77 C-----TAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWEPR 128 (150)
Q Consensus 77 ~-----Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~~~ 128 (150)
. ++..+.++........+.+ ....-+.|+++++|+...-+.- +.+-+|..
T Consensus 127 ~~glr~~~~~~~~~~~~~~g~~~~~-~~~~w~~v~~~l~~v~~~w~~~-d~dlWEer 181 (599)
T 2vn4_A 127 GPALRAIALIGYSKWLINNNYQSTV-SNVIWPIVRNDLNYVAQYWNQT-GFDLWEEV 181 (599)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHH-HHHTHHHHHHHHHHHHHHTTSC-EECTTSCC
T ss_pred ccchhHHHHHHHHHHHHHhCCcccc-cHHHHHHHHHHHHHHHHhCCCC-CCCeeeec
Confidence 7 5566555543221000000 0012478999999999987652 44555533
No 62
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=84.13 E-value=1.3 Score=35.98 Aligned_cols=101 Identities=12% Similarity=0.003 Sum_probs=58.2
Q ss_pred CchhHHHHHHHHHHHcCC------CCCccHHHHHHHHHHHhhccCCCCCC--CcccccCCCCCCccccCCCCCC-----C
Q 048587 6 SQTWDCAFAVQALLACNL------TDEIGPILMKAHDFLKTSQVTDNPPG--DFESMFRHTSKGGWTFSNKDHG-----W 72 (150)
Q Consensus 6 s~~wdTala~~AL~~aG~------~~~~~~~i~ra~~wL~~~Q~~d~~~G--~~~~~~~~~~~GgW~fs~~~~~-----~ 72 (150)
..+|+.++.+.++..+.. .+++.+.+.++++||++.-... .| +|. ++....+ .
T Consensus 53 k~l~~nar~l~~~a~a~~~~~~~~~~~~l~~A~~~~~fl~~~~~d~--~gg~g~~------------~s~d~dg~~~~~~ 118 (402)
T 1fp3_A 53 KYVWLQGRQVWMYCRLYRKLERFHRPELLDAAKAGGEFLLRHARVA--PPEKKCA------------FVLTRDGRPVKVQ 118 (402)
T ss_dssp EEHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHTBSS--TTSCCBC------------SEECTTSCEEECC
T ss_pred cchhhhHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhccCc--CCCCceE------------EEECCCCCccccc
Confidence 458999999999976432 3457788999999999975321 23 443 3321111 1
Q ss_pred CcccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcc--cCCCCccc
Q 048587 73 PVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQ--SQTGGVPA 124 (150)
Q Consensus 73 pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Q--n~dGGW~~ 124 (150)
-...+-|.++.++..+... .|++...+..++.+++++..- .+.|+|..
T Consensus 119 ~~lyd~af~~~a~~~~~~a----tgd~~~~~~A~~l~~~~~~~~~d~~~G~f~~ 168 (402)
T 1fp3_A 119 RSIFSECFYTMAMNELWRV----TAEARYQSEAVDMMDQIVHWVREDPSGLGRP 168 (402)
T ss_dssp SSSHHHHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHHHHTCGGGGCCC
T ss_pred cchHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhccCCCcccCc
Confidence 2455678888888765421 122222333444455555432 45676643
No 63
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=81.75 E-value=3 Score=35.20 Aligned_cols=80 Identities=9% Similarity=-0.007 Sum_probs=53.3
Q ss_pred ccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHHHhcCCCCcccCCCCCHHHHH
Q 048587 27 IGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYY 106 (150)
Q Consensus 27 ~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~ 106 (150)
+-+.+++.++.|++.|..+ |.|.. ..+. ...+++++.||...-+|+...+.. .+......++.+
T Consensus 292 l~~~~~~~a~~l~~~Q~~~---G~W~~-vld~----------~~~y~EsSaTAmfaygllkgvr~G--~Ld~~~Y~~~A~ 355 (445)
T 3k11_A 292 VMDYFRAHVRGVTALQSGE---GFWHQ-LLDC----------NDSYLETSATAIYVYCLAHAINKG--WIDAIAYGPVAQ 355 (445)
T ss_dssp HHHHHHHHHHHHHTTCCTT---SCEES-BTTC----------TTSCEEHHHHHHHHHHHHHHHHHT--SSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCC---Cchhh-ccCC----------CCCCCCccHHHHHHHHHHHHHHcC--CCCHHHHHHHHH
Confidence 4577889999999999865 77752 2221 123678888888877776653210 000011346789
Q ss_pred HHHHHHHhcccCCCCc
Q 048587 107 DAVNCIISMQSQTGGV 122 (150)
Q Consensus 107 rav~wL~~~Qn~dGGW 122 (150)
||.+.|++.-++||--
T Consensus 356 ka~~~L~~~i~~dG~l 371 (445)
T 3k11_A 356 LGWHAVAGKINEEGQV 371 (445)
T ss_dssp HHHHHHHTTBCTTSCB
T ss_pred HHHHHHHHhCCCCCCE
Confidence 9999999988899854
No 64
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=80.59 E-value=1.1 Score=27.84 Aligned_cols=17 Identities=0% Similarity=0.128 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhcccCCC
Q 048587 104 RYYDAVNCIISMQSQTG 120 (150)
Q Consensus 104 ~i~rav~wL~~~Qn~dG 120 (150)
.|+||++||.+...+.-
T Consensus 46 NvErAaDWLFSH~D~~~ 62 (63)
T 1wgn_A 46 NIEQILDYLFAHSGPSS 62 (63)
T ss_dssp CHHHHHHHHHHHSCCCC
T ss_pred CHHHHHHHHHhCCCCCC
Confidence 38999999999776643
No 65
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=80.52 E-value=1.9 Score=27.49 Aligned_cols=29 Identities=21% Similarity=0.076 Sum_probs=20.1
Q ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCC
Q 048587 11 CAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTD 45 (150)
Q Consensus 11 Tala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d 45 (150)
-..|+.||..++.. +.+|++||+..|.+.
T Consensus 43 r~~a~~AL~~~~~n------ve~Ave~Ll~~~~p~ 71 (73)
T 1vg5_A 43 RTQVEVALAAADDD------LTVAVEILMSQSGPS 71 (73)
T ss_dssp HHHHHHHHHHHTSC------HHHHHHHHHTCSCSS
T ss_pred HHHHHHHHHHhCCC------HHHHHHHHHHCCCCC
Confidence 34455555555432 789999999988764
No 66
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=79.46 E-value=2.2 Score=26.44 Aligned_cols=14 Identities=14% Similarity=0.180 Sum_probs=12.3
Q ss_pred HHHHHHHHHhhccC
Q 048587 31 LMKAHDFLKTSQVT 44 (150)
Q Consensus 31 i~ra~~wL~~~Q~~ 44 (150)
|.||++||-++..+
T Consensus 47 vErAaDWLFSH~D~ 60 (63)
T 1wgn_A 47 IEQILDYLFAHSGP 60 (63)
T ss_dssp HHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhCCCC
Confidence 89999999998765
No 67
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=77.92 E-value=2.4 Score=26.08 Aligned_cols=28 Identities=29% Similarity=0.181 Sum_probs=19.8
Q ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCC
Q 048587 12 AFAVQALLACNLTDEIGPILMKAHDFLKTSQVTD 45 (150)
Q Consensus 12 ala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d 45 (150)
..|+.||..++.. +.+|++||..++.+.
T Consensus 24 ~~a~~AL~~~~~n------ve~A~e~L~~~~~~~ 51 (63)
T 1wji_A 24 EASRQALMDNGNN------LEAALNVLLTSNKQK 51 (63)
T ss_dssp HHHHHHHHHTTSC------HHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHhCCC------HHHHHHHHHHCCCCc
Confidence 3456666665532 899999999988763
No 68
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=77.43 E-value=1.8 Score=27.24 Aligned_cols=30 Identities=17% Similarity=0.023 Sum_probs=22.6
Q ss_pred hHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCC
Q 048587 78 TAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTG 120 (150)
Q Consensus 78 Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dG 120 (150)
...++.||.+... .|++||+||++.+...|
T Consensus 34 ~~an~~AL~at~G-------------nve~Ave~L~~~~~~~~ 63 (67)
T 2dna_A 34 YNANLQALIATDG-------------DTNAAIYKLKSSQGFSG 63 (67)
T ss_dssp HHHHHHHHHHTTS-------------CHHHHHHHHHHCCSSSC
T ss_pred HHHHHHHHHHcCC-------------CHHHHHHHHHhCCCccC
Confidence 4566788877642 27899999999887665
No 69
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A
Probab=77.30 E-value=3.8 Score=34.93 Aligned_cols=73 Identities=22% Similarity=0.246 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHHcCCCCC----ccHHHHHHHHHHHhhccCCCCCCCcc----------cccCCCC--CCccccCCCCCC
Q 048587 8 TWDCAFAVQALLACNLTDE----IGPILMKAHDFLKTSQVTDNPPGDFE----------SMFRHTS--KGGWTFSNKDHG 71 (150)
Q Consensus 8 ~wdTala~~AL~~aG~~~~----~~~~i~ra~~wL~~~Q~~d~~~G~~~----------~~~~~~~--~GgW~fs~~~~~ 71 (150)
+-|.++++.||+..|...+ ..+.+++-++|....|...++.|.|. .+..+.+ .+.|+
T Consensus 68 ~RDaa~t~~aL~~~g~~~~~~~~l~~~a~~y~~~~~~lq~~~~~~G~~~~~~~~glgep~y~vdG~~~~~~w~------- 140 (492)
T 2fba_A 68 TRDSAITFLTVLSELEDNNFNTTLAKAVEYYINTSYNLQRTSNPSGSFDDENHKGLGEPKFNTDGSAYTGAWG------- 140 (492)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTSCBTTBCTTSGGGGGGGCCEECTTSCBCCSCCS-------
T ss_pred cchHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHhcccCCCCCcCcccccccCceeeccCCCcCCcccC-------
Confidence 4589999999999986322 13445555555224553323347765 2222222 23332
Q ss_pred CCcccchHHHHHHHHH
Q 048587 72 WPVSDCTAEALLCCLY 87 (150)
Q Consensus 72 ~pd~d~Ta~al~aL~~ 87 (150)
.|..|.++..+.+|..
T Consensus 141 ~~Q~D~~g~~~~al~~ 156 (492)
T 2fba_A 141 RPQNDGPALRAYAISR 156 (492)
T ss_dssp CCBTTHHHHHHHHHHH
T ss_pred CccccchhHHHHHHHH
Confidence 4788999998888764
No 70
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=76.72 E-value=3.1 Score=26.12 Aligned_cols=28 Identities=32% Similarity=0.101 Sum_probs=19.5
Q ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccC
Q 048587 11 CAFAVQALLACNLTDEIGPILMKAHDFLKTSQVT 44 (150)
Q Consensus 11 Tala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~ 44 (150)
.-..+.||.+++-+ |.+|++||.+.+..
T Consensus 34 ~~an~~AL~at~Gn------ve~Ave~L~~~~~~ 61 (67)
T 2dna_A 34 YNANLQALIATDGD------TNAAIYKLKSSQGF 61 (67)
T ss_dssp HHHHHHHHHHTTSC------HHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHcCCC------HHHHHHHHHhCCCc
Confidence 33446666665533 89999999998764
No 71
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=76.04 E-value=2.8 Score=24.78 Aligned_cols=26 Identities=31% Similarity=0.161 Sum_probs=17.7
Q ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHhhc
Q 048587 11 CAFAVQALLACNLTDEIGPILMKAHDFLKTSQ 42 (150)
Q Consensus 11 Tala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q 42 (150)
...++.||..++-+ +.+|++||.+.+
T Consensus 26 ~~~~~~AL~~t~gn------ve~Ave~L~~~~ 51 (53)
T 2knz_A 26 REANLQALIATGGD------INAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHHHTSC------HHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCC------HHHHHHHHHHcC
Confidence 34455666665532 789999999865
No 72
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=72.03 E-value=3.6 Score=26.90 Aligned_cols=13 Identities=15% Similarity=-0.054 Sum_probs=11.7
Q ss_pred HHHHHHHHHhhcc
Q 048587 31 LMKAHDFLKTSQV 43 (150)
Q Consensus 31 i~ra~~wL~~~Q~ 43 (150)
+.+|++||.++|-
T Consensus 57 ve~A~e~L~sh~~ 69 (83)
T 1veg_A 57 VQLAAQTLAHHGG 69 (83)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHhCCC
Confidence 8999999999876
No 73
>3eu8_A Putative glucoamylase; YP_210071.1, structural genomics, JOI for structural genomics, JCSG; 2.12A {Bacteroides fragilis nctc 9343}
Probab=71.04 E-value=7.6 Score=32.72 Aligned_cols=101 Identities=16% Similarity=0.085 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHHc---CCCC--CccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHH
Q 048587 8 TWDCAFAVQALLAC---NLTD--EIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEAL 82 (150)
Q Consensus 8 ~wdTala~~AL~~a---G~~~--~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al 82 (150)
+=.++|.|+|++.+ |.-. +.-+++.+.+++|.+.+.- .|-|..++...+..--+|+..+. .-++.+||..+
T Consensus 64 ~tniGfgL~A~~vA~e~G~I~r~ea~~R~~~tL~~l~~~~r~---~G~fyhwyD~~Tg~~lpf~~~d~-~~StVDTa~L~ 139 (430)
T 3eu8_A 64 SGGSGFGIMAILAGIDRGYVSREEGLRRMEKIVGFLEKADRF---KGAYPHWWNGETGHVQPFGQKDN-GGDLVETAFLM 139 (430)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCCB---TTBCCSEEETTTCCBCCBTTTBC-SEEHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhchhc---CCcCccccCCCCCCcCCCCcccC-cccHHHHHHHH
Confidence 44678888888654 6543 2357788899999976664 48888776544433234433222 35677899999
Q ss_pred HHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhc
Q 048587 83 LCCLYFSMLPPEIVGEKMEPERYYDAVNCIISM 115 (150)
Q Consensus 83 ~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~ 115 (150)
.+|+.+++.-. +.......|+.-++-|...
T Consensus 140 ~GlL~ar~YF~---~~~~~E~~i~~~~~~L~~~ 169 (430)
T 3eu8_A 140 QGLLAVHQYYA---EGSAEEKKLAGRIDKLWRE 169 (430)
T ss_dssp HHHHHHHHHHT---TSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---CCChhHHHHHHHHHHHHHh
Confidence 99988764210 1111234566656655553
No 74
>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A {Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A* 3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A*
Probab=70.97 E-value=16 Score=30.94 Aligned_cols=106 Identities=22% Similarity=0.315 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHH---HcCCCCCccHHHHHHHHHHHh---hccCCCCCCCcc------ccc-CCCC--CCccccCCCCCCC
Q 048587 8 TWDCAFAVQALL---ACNLTDEIGPILMKAHDFLKT---SQVTDNPPGDFE------SMF-RHTS--KGGWTFSNKDHGW 72 (150)
Q Consensus 8 ~wdTala~~AL~---~aG~~~~~~~~i~ra~~wL~~---~Q~~d~~~G~~~------~~~-~~~~--~GgW~fs~~~~~~ 72 (150)
+-|.++++.||+ ..|...+ .++..+||.. .|...++.|.|. ..| .+.+ .+.| +.
T Consensus 53 ~RDaa~t~~aL~~~~~~G~~~~----a~~~~~~l~~~~~lQ~~~~~~G~l~~~glgE~~y~vdG~~~~~~w-------~~ 121 (472)
T 1gai_A 53 TRDSGLVIKTLVDLFRNGDTDL----LSTIEHYISSQAIIQGVSNPSGDLSSGGLGEPKFNVDETAYTGSW-------GR 121 (472)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGG----HHHHHHHHHHHHHHHHCCBTTBCTTTTGGGCCEECTTSCBCCSCC-------SC
T ss_pred hhhHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHHHHhhcccCCCCccccCCCCCceEccCCCccCCcC-------CC
Confidence 459999999999 7887533 5667777776 452223347665 332 2221 2334 24
Q ss_pred Ccccc-----hHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccC
Q 048587 73 PVSDC-----TAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWE 126 (150)
Q Consensus 73 pd~d~-----Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~ 126 (150)
|..|. ++..+.++..........+ ....-+.|++.++||...=+. =+.+-+|
T Consensus 122 ~Q~D~~g~ra~~~~~~~~~l~~~g~~~~~-~~~~w~~i~~~l~~v~~~w~~-pd~dlWE 178 (472)
T 1gai_A 122 PQRDGPALRATAMIGFGQWLLDNGYTSAA-TEIVWPLVRNDLSYVAQYWNQ-TGYDLWE 178 (472)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHTTCHHHH-HHTHHHHHHHHHHHHHHHTTS-CEECTTS
T ss_pred ccccccchhHHHHHHHHHHHHHcCCcccc-chhHHHHHHHHHHHHHHhcCC-CCCCCCc
Confidence 77888 5666666542221000000 001235699999999875332 1444444
No 75
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=69.44 E-value=4.4 Score=25.59 Aligned_cols=27 Identities=26% Similarity=0.150 Sum_probs=18.0
Q ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHHhhccC
Q 048587 12 AFAVQALLACNLTDEIGPILMKAHDFLKTSQVT 44 (150)
Q Consensus 12 ala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~ 44 (150)
..|..||..++- .+.+|++||.+++..
T Consensus 44 ~~a~~AL~~t~~------nve~Ave~L~~~~~d 70 (73)
T 1wiv_A 44 DVARKALKASGG------DIEKATDWVFNNSGP 70 (73)
T ss_dssp HHHHHHHHHTTS------CHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHhCC------CHHHHHHHHHhCCCC
Confidence 344555555543 288999999997763
No 76
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=68.66 E-value=6.2 Score=31.48 Aligned_cols=102 Identities=11% Similarity=0.060 Sum_probs=49.7
Q ss_pred CchhHHHHHHHHHHHcCC---CCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHH
Q 048587 6 SQTWDCAFAVQALLACNL---TDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEAL 82 (150)
Q Consensus 6 s~~wdTala~~AL~~aG~---~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al 82 (150)
..+++-||++.||++... .+++.+..++.+++|+++...+ .|.|...+++ +. .....+..+..+
T Consensus 112 ~~~~~~af~i~al~~~y~~tg~~~~l~~A~~~~~~i~~~~~d~--~g~~~~~~~~-----~~------~~~~~~~~~~~~ 178 (388)
T 2gz6_A 112 YNIFSDCFAAMAFSQYALASGEEWAKDVAMQAYNNVLRRKDNP--KGKYTKTYPG-----TR------PMKALAVPMILA 178 (388)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTC---------------------CC------CCEETHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC--CcccCcccCC-----CC------CCCCCCHHHHHH
Confidence 467899999999987422 2345566777888888765422 2443322211 10 012245566777
Q ss_pred HHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhc--ccCCCCccc
Q 048587 83 LCCLYFSMLPPEIVGEKMEPERYYDAVNCIISM--QSQTGGVPA 124 (150)
Q Consensus 83 ~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~--Qn~dGGW~~ 124 (150)
.+|+.+.+. .|++...+..++.++.+... +.++|+...
T Consensus 179 ~all~l~~~----t~d~~~~~~A~~~~~~~~~~~~~~~~g~~~e 218 (388)
T 2gz6_A 179 NLTLEMEWL----LPQETLENVLAATVQEVMGDFLDQEQGLMYE 218 (388)
T ss_dssp HHHHHTGGG----SCHHHHHHHHHHHHHHHHHTTEETTTTEECS
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHhccCCCeEEE
Confidence 777776531 12222234444555555543 234565433
No 77
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Probab=68.60 E-value=7.5 Score=32.24 Aligned_cols=106 Identities=12% Similarity=0.115 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHcCC---CCCccHHHHHHHHHHHhhccCCCCCCCcccc-cCCCCCCccccCCCCCCCCcccch------
Q 048587 9 WDCAFAVQALLACNL---TDEIGPILMKAHDFLKTSQVTDNPPGDFESM-FRHTSKGGWTFSNKDHGWPVSDCT------ 78 (150)
Q Consensus 9 wdTala~~AL~~aG~---~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~-~~~~~~GgW~fs~~~~~~pd~d~T------ 78 (150)
=|+.+-+.+|..++. +++|.+...++++++++...+++ |+.... +-++..|.+......+|+ .|+.
T Consensus 173 ID~~mni~~L~~A~~~~gd~~y~~~A~~ha~~~l~~~~r~d--gs~~h~~~~d~~~G~~~~~~t~qGy--~dds~WaRGq 248 (397)
T 2zzr_A 173 IDCLLNIQLLFFAYEQTGDEKYRQVAVNHFYASANNVVRDD--SSAFHTFYFDPETGEPLKGVTRQGY--SDESSWARGQ 248 (397)
T ss_dssp TTHHHHTHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTBCTT--SCBCSEEEECTTTCCEEEEECTTSS--STTSCBHHHH
T ss_pred echHhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCcCCC--CCeEEEEEeeCCCCCcccCCccccc--CcchhhHHHH
Confidence 478888888886643 34577778888999999888753 543322 222223443211122333 3455
Q ss_pred HHHHHHHHHhcCCCCcccCCCCCHHHHHHH---HHHHHhcccCCCCccccC
Q 048587 79 AEALLCCLYFSMLPPEIVGEKMEPERYYDA---VNCIISMQSQTGGVPAWE 126 (150)
Q Consensus 79 a~al~aL~~~~~~~~~~~g~~~~~~~i~ra---v~wL~~~Qn~dGGW~~~~ 126 (150)
|+++.||..+-+. .+ +.+.++.| .++++..=..||+ +.|+
T Consensus 249 Aw~i~gl~~lY~~----T~---d~~yL~~A~~la~~~l~~~~~d~~-pywd 291 (397)
T 2zzr_A 249 AWGIYGIPLSYRK----MK---DYQQIILFKGMTNYFLNRLPEDKV-SYWD 291 (397)
T ss_dssp HHHHHHHHHHHHH----HC---CHHHHHHHHHHHHHHHHTCCTTSC-CBSB
T ss_pred HHHHHHHHHHHHH----HC---CHHHHHHHHHHHHHHHHhhHHhCC-cccc
Confidence 9999999886431 11 33444444 4556654444555 3443
No 78
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=66.99 E-value=7.1 Score=23.92 Aligned_cols=28 Identities=25% Similarity=0.121 Sum_probs=18.5
Q ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHHhhccC
Q 048587 12 AFAVQALLACNLTDEIGPILMKAHDFLKTSQVT 44 (150)
Q Consensus 12 ala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~ 44 (150)
..|..||..++- ..+++|++||.+++..
T Consensus 34 ~~a~~AL~~t~~-----~nve~A~ewL~~~~~d 61 (64)
T 2cpw_A 34 ARAQKALASTGG-----RSVQTACDWLFSHSGP 61 (64)
T ss_dssp HHHHHHHHHTTT-----SCHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHcCC-----CCHHHHHHHHHhCCCC
Confidence 345556655543 1388999999987753
No 79
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=66.92 E-value=6.2 Score=25.15 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=17.7
Q ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHHhhccC
Q 048587 13 FAVQALLACNLTDEIGPILMKAHDFLKTSQVT 44 (150)
Q Consensus 13 la~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~ 44 (150)
.++.||.+++-+ |.+|++||.+.+.+
T Consensus 46 ~~~~AL~~t~Gn------ve~Ave~L~~~~~~ 71 (74)
T 1vej_A 46 ANLQALVATDGD------IHAAIEMLLGASGP 71 (74)
T ss_dssp HHHHHHHHTTSC------HHHHHHHHHTCCCC
T ss_pred HHHHHHHHhCCC------HHHHHHHHHhCCCC
Confidence 345555555432 78999999987665
No 80
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=65.26 E-value=5.8 Score=23.27 Aligned_cols=23 Identities=30% Similarity=0.174 Sum_probs=14.5
Q ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHHhh
Q 048587 13 FAVQALLACNLTDEIGPILMKAHDFLKTS 41 (150)
Q Consensus 13 la~~AL~~aG~~~~~~~~i~ra~~wL~~~ 41 (150)
.++.||..++-+ +.+|++||.++
T Consensus 29 ~~~~AL~~t~gn------~e~A~e~L~~~ 51 (52)
T 2jy5_A 29 ANLQALIATGGD------INAAIERLLGS 51 (52)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHTTC
T ss_pred HHHHHHHHhCCC------HHHHHHHHHhC
Confidence 345555555432 78999999763
No 81
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=65.23 E-value=6.4 Score=24.20 Aligned_cols=29 Identities=21% Similarity=0.107 Sum_probs=20.4
Q ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccC
Q 048587 11 CAFAVQALLACNLTDEIGPILMKAHDFLKTSQVT 44 (150)
Q Consensus 11 Tala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~ 44 (150)
...|..||..+|.. .+++|++||..++..
T Consensus 23 ~~~a~~AL~~t~n~-----~~e~A~~wL~~h~~d 51 (64)
T 2crn_A 23 VHTALKALAATGRK-----TAEEALAWLHDHCND 51 (64)
T ss_dssp HHHHHHHHHHHTSC-----CHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHhCCC-----CHHHHHHHHHhCCCC
Confidence 34566666666542 278999999998864
No 82
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=64.91 E-value=5.7 Score=22.74 Aligned_cols=24 Identities=25% Similarity=0.062 Sum_probs=15.6
Q ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHh
Q 048587 11 CAFAVQALLACNLTDEIGPILMKAHDFLKT 40 (150)
Q Consensus 11 Tala~~AL~~aG~~~~~~~~i~ra~~wL~~ 40 (150)
.-.++.||.+++-+ +.+|++||.+
T Consensus 22 ~~~~~~AL~~~~gn------v~~Ave~L~~ 45 (46)
T 2bwb_A 22 FDRNVAALRRSGGS------VQGALDSLLN 45 (46)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHHC
T ss_pred HHHHHHHHHHhCCC------HHHHHHHHHc
Confidence 33455666665533 7899999975
No 83
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=64.78 E-value=6.9 Score=32.00 Aligned_cols=48 Identities=10% Similarity=-0.002 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhcC---CCCcccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 048587 78 TAEALLCCLYFSM---LPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAW 125 (150)
Q Consensus 78 Ta~al~aL~~~~~---~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~ 125 (150)
-++++.||..+-+ .|.++.+.+.-.+.+++-++.|+..|.+||-|...
T Consensus 235 ~gW~~~gl~~~l~~l~~p~~~~~~~~~~~~~~~~a~~~~~~q~~~G~W~~~ 285 (382)
T 3pmm_A 235 NSWLTMVIPDFLELVDLPEGNAVRRYLITVLDAQIAALAECQDDSGLWHTL 285 (382)
T ss_dssp HHHHHHHHHHHHHHHCCCTTCHHHHHHHHHHHHHHHHHHHHCCTTSCEESB
T ss_pred ccHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHcCCCCCChhhc
Confidence 6788888876532 22111111122356788899999999999999843
No 84
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.60 E-value=6.6 Score=22.29 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=15.2
Q ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHHhh
Q 048587 12 AFAVQALLACNLTDEIGPILMKAHDFLKTS 41 (150)
Q Consensus 12 ala~~AL~~aG~~~~~~~~i~ra~~wL~~~ 41 (150)
..|..||..+| .+.+|++||.++
T Consensus 24 ~~a~~AL~~~~-------n~e~A~~~L~~h 46 (47)
T 2ekk_A 24 EHAMEALLNTS-------TMEQATEYLLTH 46 (47)
T ss_dssp HHHHHHHHHSC-------SHHHHHHHHHTC
T ss_pred HHHHHHHHHcC-------CHHHHHHHHHcC
Confidence 34555665554 178999999865
No 85
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=64.27 E-value=6.3 Score=23.81 Aligned_cols=23 Identities=26% Similarity=0.086 Sum_probs=14.9
Q ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHHhh
Q 048587 13 FAVQALLACNLTDEIGPILMKAHDFLKTS 41 (150)
Q Consensus 13 la~~AL~~aG~~~~~~~~i~ra~~wL~~~ 41 (150)
.++.||.+++-+ |.+|++||.+.
T Consensus 34 ~~~~AL~~~~gn------ve~Ave~L~~~ 56 (58)
T 1wr1_B 34 RNVAALRRSGGS------VQGALDSLLNG 56 (58)
T ss_dssp HHHHHHHHHTSC------HHHHHHHHHHT
T ss_pred HHHHHHHHhCCC------HHHHHHHHHhC
Confidence 345555555432 78999999874
No 86
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=63.48 E-value=8.8 Score=22.74 Aligned_cols=14 Identities=21% Similarity=0.100 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhccC
Q 048587 31 LMKAHDFLKTSQVT 44 (150)
Q Consensus 31 i~ra~~wL~~~Q~~ 44 (150)
|.+|++||.+....
T Consensus 38 v~~Ave~L~~~~~~ 51 (54)
T 2dah_A 38 VDAAVEKLRQSSGP 51 (54)
T ss_dssp HHHHHHHHHHHSCS
T ss_pred HHHHHHHHHhCCCc
Confidence 88999999987654
No 87
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=63.32 E-value=7.1 Score=21.64 Aligned_cols=23 Identities=39% Similarity=0.433 Sum_probs=14.8
Q ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHHh
Q 048587 12 AFAVQALLACNLTDEIGPILMKAHDFLKT 40 (150)
Q Consensus 12 ala~~AL~~aG~~~~~~~~i~ra~~wL~~ 40 (150)
..|..||..++.+ +.+|++||.+
T Consensus 19 ~~a~~AL~~~~~n------~e~A~~~L~~ 41 (43)
T 2g3q_A 19 EEAHNALEKCNWD------LEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHHHTSC------HHHHHHHHHT
T ss_pred HHHHHHHHHhCcC------HHHHHHHHHc
Confidence 3455566555432 7888899875
No 88
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=59.78 E-value=8.4 Score=35.78 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=29.7
Q ss_pred chHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcc-cCCCCcc
Q 048587 77 CTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQ-SQTGGVP 123 (150)
Q Consensus 77 ~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Q-n~dGGW~ 123 (150)
|++.++++|+.++ ..+..++.++||.+.| +++|.|.
T Consensus 333 Daa~t~~all~~G-----------~~e~A~~~l~~L~~~Q~~~~G~~~ 369 (1020)
T 1ulv_A 333 DMYQSVTALLAAG-----------DEEAAARGVEWLFTYQQQPDGHFP 369 (1020)
T ss_dssp HHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHTCCTTSCCC
T ss_pred hHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHhcCCCCCee
Confidence 6778888888876 3566789999999999 8999874
No 89
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=58.64 E-value=8.2 Score=31.37 Aligned_cols=97 Identities=13% Similarity=0.094 Sum_probs=50.3
Q ss_pred CchhHHHHHHHHHHHcCC--CCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHH
Q 048587 6 SQTWDCAFAVQALLACNL--TDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALL 83 (150)
Q Consensus 6 s~~wdTala~~AL~~aG~--~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~ 83 (150)
-.++|-||+++||++.-. ++++.+.+.+..++|++.-... ..|.+..... ..|... .++.....+.++.
T Consensus 110 ~~lyd~Af~i~al~~~~~tgd~~~l~~A~~l~~~i~~~f~d~-~~G~~~~~~~----~~~~~~----~~~~~n~~m~l~e 180 (402)
T 3gt5_A 110 NHCYGLAFVMLAYSCGLKVGIKQAREWMDETWCLLERHFWDA-EYGLYKDEAD----AQWNFT----RYRGQNANMHMCE 180 (402)
T ss_dssp EEHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHTEET-TTTEECCEEC----TTCCBC----SCEEHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcCC-cCCCchhhhC----CCCCCC----CCCCCCHHHHHHH
Confidence 367999999999987322 3445677777888887763321 1244321111 122210 1122333444555
Q ss_pred HHHHhcCCCCcccCCCCCHHHHHHHHHHHHhc
Q 048587 84 CCLYFSMLPPEIVGEKMEPERYYDAVNCIISM 115 (150)
Q Consensus 84 aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~ 115 (150)
+|+++.. ..|++.-.+.+++.+++++..
T Consensus 181 all~L~~----~tgd~~~~~~a~~l~~~~~~~ 208 (402)
T 3gt5_A 181 AMLAAYE----ASGEQRYLERALVLADRITRR 208 (402)
T ss_dssp HHHHHHH----HHCCHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHH----hhCCHHHHHHHHHHHHHHHHH
Confidence 6665542 123333445566666666653
No 90
>3ren_A Glycosyl hydrolase, family 8; (alpha/alpha)6-barrel fold, alpha-amylase; 2.00A {Clostridium perfringens}
Probab=57.19 E-value=52 Score=26.80 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHhcccCC------CCccccCCCCcchhhhcc
Q 048587 101 EPERYYDAVNCIISMQSQT------GGVPAWEPRRAPSWLESL 137 (150)
Q Consensus 101 ~~~~i~rav~wL~~~Qn~d------GGW~~~~~~~~~~~l~~~ 137 (150)
+.+-.+.+++-|...|..| ||++.-+.++..+|=|++
T Consensus 298 D~~la~~~~~rm~~fq~~d~~s~yyGG~~~~~~~~~~sfdNL~ 340 (350)
T 3ren_A 298 DKELFNKAIDKLKYYQIKNKDSVLYGGFGDEKTNSVYSFDNLN 340 (350)
T ss_dssp CHHHHHHHHHHHHHHSCCCTTSTTTTSCSBTTTTBCBHHHHHH
T ss_pred CHHHHHHHHHHHHhcccCCCCcccCCcccccCCCceeeeccHH
Confidence 5778889999999999988 888876667777775544
No 91
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=56.81 E-value=11 Score=23.02 Aligned_cols=28 Identities=21% Similarity=0.081 Sum_probs=19.4
Q ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHHhhccC
Q 048587 12 AFAVQALLACNLTDEIGPILMKAHDFLKTSQVT 44 (150)
Q Consensus 12 ala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~ 44 (150)
..|..||..+|.. .+.+|++||..++..
T Consensus 24 ~~a~~AL~~t~~~-----nve~A~ewLl~~~~d 51 (64)
T 1whc_A 24 GRAEKALALTGNQ-----GIEAAMDWLMEHEDD 51 (64)
T ss_dssp HHHHHHHHHHTSC-----CHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCC-----CHHHHHHHHHhCCCC
Confidence 4466666666421 289999999998764
No 92
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.17 E-value=6.9 Score=23.75 Aligned_cols=26 Identities=31% Similarity=0.227 Sum_probs=17.1
Q ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHHhhccC
Q 048587 13 FAVQALLACNLTDEIGPILMKAHDFLKTSQVT 44 (150)
Q Consensus 13 la~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~ 44 (150)
.|..||..++. .+.+|++||..++..
T Consensus 25 ~a~~AL~~t~~------nve~A~e~L~~~~~d 50 (63)
T 2dak_A 25 QALKALRATNN------SLERAVDWIFSHIDD 50 (63)
T ss_dssp HHHHHHHHTTS------CSHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCC------CHHHHHHHHHhCCCC
Confidence 34455555442 278999999997764
No 93
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=53.72 E-value=8.4 Score=22.20 Aligned_cols=24 Identities=29% Similarity=0.210 Sum_probs=15.2
Q ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHHhh
Q 048587 12 AFAVQALLACNLTDEIGPILMKAHDFLKTS 41 (150)
Q Consensus 12 ala~~AL~~aG~~~~~~~~i~ra~~wL~~~ 41 (150)
..|..||..++.. +.+|++||.+.
T Consensus 23 ~~a~~AL~~~~~n------~e~A~e~L~~g 46 (49)
T 1ify_A 23 ERVVAALRASYNN------PHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHTTTSC------SHHHHHHHHHC
T ss_pred HHHHHHHHHhCCC------HHHHHHHHHhC
Confidence 3455555555432 67899999873
No 94
>2z07_A Putative uncharacterized protein TTHA0978; uncharacterized conserved protein, structural genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=51.81 E-value=8.5 Score=31.26 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcc
Q 048587 8 TWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFE 52 (150)
Q Consensus 8 ~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~ 52 (150)
.|||.+++++|+..+. ..+.+.-++++...|.++ |-..
T Consensus 33 ~wDs~~~~~gl~~~~~----~~a~~~l~~~~~~~q~~~---G~ip 70 (420)
T 2z07_A 33 LWDSAFIALGWTQVDW----ERAWQELLCLFDYGQGPD---GMLP 70 (420)
T ss_dssp HHHHHHHHHHHTTTCH----HHHHHHHHHHHHHHCCTT---CCCC
T ss_pred HHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHhhC---CCcc
Confidence 6999999999987553 233333444443378765 6543
No 95
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.67 E-value=14 Score=23.80 Aligned_cols=14 Identities=14% Similarity=0.187 Sum_probs=12.1
Q ss_pred HHHHHHHHHhhccC
Q 048587 31 LMKAHDFLKTSQVT 44 (150)
Q Consensus 31 i~ra~~wL~~~Q~~ 44 (150)
+++|++||..++..
T Consensus 57 ve~A~ewL~~~~~d 70 (83)
T 2dai_A 57 VPQAMEWLIEHAED 70 (83)
T ss_dssp HHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHCCCC
Confidence 78999999998764
No 96
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.64 E-value=14 Score=23.20 Aligned_cols=14 Identities=7% Similarity=0.029 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhccC
Q 048587 31 LMKAHDFLKTSQVT 44 (150)
Q Consensus 31 i~ra~~wL~~~Q~~ 44 (150)
+++|++||..++..
T Consensus 38 ve~A~ewL~~~~~d 51 (74)
T 2dag_A 38 AEAAMNWVMSHMDD 51 (74)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCC
Confidence 88999999998764
No 97
>4fnv_A Heparinase III protein, heparitin sulfate lyase; toroid fold, -sandwich fold, heparan sulfate degradation; 1.60A {Bacteroides thetaiotaomicron}
Probab=50.24 E-value=19 Score=31.92 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHhcccCCC-------CccccC
Q 048587 101 EPERYYDAVNCIISMQSQTG-------GVPAWE 126 (150)
Q Consensus 101 ~~~~i~rav~wL~~~Qn~dG-------GW~~~~ 126 (150)
-.+.|+|++.+|+.+..+|| ..+.|.
T Consensus 342 ~~~~L~km~~~l~~l~~PDG~~~g~~~~lp~fn 374 (702)
T 4fnv_A 342 FTEPLRKAAEVVMYFTYPNYFIKGSDNVVPMFN 374 (702)
T ss_dssp TTHHHHHHHHHHHHTSCGGGGSCCSSCCSCCCS
T ss_pred HHHHHHHHHHHHHHHcCCCCCccccccccCccC
Confidence 35799999999999999999 888774
No 98
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=49.70 E-value=14 Score=32.13 Aligned_cols=36 Identities=11% Similarity=0.054 Sum_probs=27.6
Q ss_pred chHHHHHHHH----HhcCCCCcccCCCCCHHHHHHHHHHHHh---cc---cCCCCcc
Q 048587 77 CTAEALLCCL----YFSMLPPEIVGEKMEPERYYDAVNCIIS---MQ---SQTGGVP 123 (150)
Q Consensus 77 ~Ta~al~aL~----~~~~~~~~~~g~~~~~~~i~rav~wL~~---~Q---n~dGGW~ 123 (150)
|.+.+++||+ .++ ..+..++..+||.. .| |+||+|.
T Consensus 54 Daa~t~~aL~~~~~~~G-----------~~~~a~~~~~~l~~~~~lQ~~y~~~G~~~ 99 (599)
T 2vn4_A 54 DSALVFKNLIDRFTETY-----------DAGLQRRIEQYITAQVTLQGLSNPSGSLA 99 (599)
T ss_dssp HHHHHHHHHHHHHHHSB-----------CHHHHHHHHHHHHHHHHHHHCCBTTBCST
T ss_pred hHHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHhcccceeeeeCCCCCcc
Confidence 5777777777 655 45677889999974 78 8999983
No 99
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=49.35 E-value=23 Score=21.21 Aligned_cols=15 Identities=7% Similarity=0.175 Sum_probs=12.3
Q ss_pred HHHHHHHHHhhccCC
Q 048587 31 LMKAHDFLKTSQVTD 45 (150)
Q Consensus 31 i~ra~~wL~~~Q~~d 45 (150)
|+.|++||++.-.++
T Consensus 38 le~AmewL~k~~~~~ 52 (54)
T 2cos_A 38 IEAALEYISKMSGPS 52 (54)
T ss_dssp HHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHhcCCC
Confidence 889999999876654
No 100
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=48.69 E-value=15 Score=25.05 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhh
Q 048587 9 WDCAFAVQALLACNLTDEIGPILMKAHDFLKTS 41 (150)
Q Consensus 9 wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~ 41 (150)
+|...++.||.+++-+ |.+|++||.+.
T Consensus 79 ~d~~~ni~AL~~t~Gd------ve~AVe~L~~~ 105 (108)
T 2cwb_A 79 QDDELSLRALQATGGD------IQAALELIFAG 105 (108)
T ss_dssp CCHHHHHHHHHHHTSC------HHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCCC------HHHHHHHHHhc
Confidence 3445566666666543 78999999874
No 101
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=48.16 E-value=22 Score=21.09 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=20.9
Q ss_pred CCCCCccHHHHHHHHHHHhhccCCCCCCCc
Q 048587 22 NLTDEIGPILMKAHDFLKTSQVTDNPPGDF 51 (150)
Q Consensus 22 G~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~ 51 (150)
|.+++-++.|..++.-++++=-.++ |+|
T Consensus 1 ~~p~~~D~rl~~al~qMl~MGF~ne--gGW 28 (52)
T 1q02_A 1 GSPPEADPRLIESLSQMLSMGFSDE--GGW 28 (52)
T ss_dssp CCCTTSCHHHHHHHHHHHTTTCCCT--TSH
T ss_pred CCCCCcChHHHHHHHHHHHcCCCcc--ccH
Confidence 4455557999999999999877753 555
No 102
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=47.97 E-value=19 Score=23.19 Aligned_cols=14 Identities=14% Similarity=0.173 Sum_probs=12.0
Q ss_pred HHHHHHHHHhhccC
Q 048587 31 LMKAHDFLKTSQVT 44 (150)
Q Consensus 31 i~ra~~wL~~~Q~~ 44 (150)
+.+|++||.+++..
T Consensus 58 ~e~A~ewL~~h~~d 71 (84)
T 1vek_A 58 VEEAMNWLLSHMDD 71 (84)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCc
Confidence 78999999998764
No 103
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=47.97 E-value=8.2 Score=22.13 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhh
Q 048587 9 WDCAFAVQALLACNLTDEIGPILMKAHDFLKTS 41 (150)
Q Consensus 9 wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~ 41 (150)
++...|+.||.+++-+ +.+|++||.++
T Consensus 16 F~~~~a~~Al~a~~~n------~e~A~~~Lf~~ 42 (47)
T 1dv0_A 16 FPESLVIQAYFACEKN------ENLAANFLLSQ 42 (47)
T ss_dssp CCHHHHHHHHTTTTSC------HHHHHHHTTSC
T ss_pred CCHHHHHHHHHHcCCC------HHHHHHHHHhC
Confidence 4456788899888843 68999999874
No 104
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=46.91 E-value=8.1 Score=31.76 Aligned_cols=45 Identities=13% Similarity=0.094 Sum_probs=30.4
Q ss_pred hHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhcccCCCCccccC
Q 048587 78 TAEALLCCLYFSMLPPEIVGEKMEPERYYDAVNCIISMQSQTGGVPAWE 126 (150)
Q Consensus 78 Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~wL~~~Qn~dGGW~~~~ 126 (150)
++-.+.+|+.+.. ..+++...+.++++++|+++.|.++|.|+...
T Consensus 233 ~aGI~~~Ll~~~~----~~~~~~~~~~i~~~l~~l~~~~~~~g~wp~~~ 277 (411)
T 3e6u_A 233 LAGIYYYLMQPSL----QVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCI 277 (411)
T ss_dssp HHHHHHHHTCGGG----CCCHHHHHHTHHHHHHHHHHTCCTTSCCCSBT
T ss_pred HHHHHHHHHHHHh----hcChHHHHHHHHHHHHHHHHhhccCCCCCCCC
Confidence 4455556655532 12222334678999999999999999998754
No 105
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=43.49 E-value=25 Score=22.76 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=23.7
Q ss_pred chhHHHHHHHHHHHcCCCCC--------ccHHHHHHHHHHHhhccC
Q 048587 7 QTWDCAFAVQALLACNLTDE--------IGPILMKAHDFLKTSQVT 44 (150)
Q Consensus 7 ~~wdTala~~AL~~aG~~~~--------~~~~i~ra~~wL~~~Q~~ 44 (150)
..|----++.-|.+-|.+.+ ..-.+.+|++||..+...
T Consensus 17 ~~~~n~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 17 EAWIMSRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKKVD 62 (85)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHTTSCC
T ss_pred ccccCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHCcCC
Confidence 34544445666777777532 011278899999997764
No 106
>4gl3_A Putative glucoamylase; PF10091 family protein, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 2.01A {Bacteroides uniformis}
Probab=42.64 E-value=55 Score=27.32 Aligned_cols=80 Identities=19% Similarity=0.166 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHc---CCCC--CccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHH
Q 048587 9 WDCAFAVQALLAC---NLTD--EIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALL 83 (150)
Q Consensus 9 wdTala~~AL~~a---G~~~--~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~ 83 (150)
=.++|.++|++.+ |.-. +.-+++.+.+++|..... +.+.|-|..++...+...-.++..+.+ -++.+|+.-+.
T Consensus 55 tniGf~L~a~~va~e~G~I~~~e~~~R~~~tL~~l~~~~~-~r~~G~fyhwyd~~Tg~~l~~~~~d~~-vStVDtg~L~~ 132 (424)
T 4gl3_A 55 GGSGFGVMAIIVGIERGFVTREQGAERMLKIVRFLSDKNT-DSYHGMWAHWMNGKTGKTIPFSRKDDG-ADIVESAFMFE 132 (424)
T ss_dssp HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHCTTS-CCBTTBCCSEEETTTCCEECSBTTBCS-EEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhccc-cccCCccccceeCCCCCCCCCcCCCCc-ccHHHHHHHHH
Confidence 3578888888643 5533 235677788888842222 224588887765444333444443332 46678999999
Q ss_pred HHHHhcC
Q 048587 84 CCLYFSM 90 (150)
Q Consensus 84 aL~~~~~ 90 (150)
+|+.+++
T Consensus 133 gLl~~~~ 139 (424)
T 4gl3_A 133 GLLAAHQ 139 (424)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
No 107
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A
Probab=41.86 E-value=81 Score=25.14 Aligned_cols=26 Identities=0% Similarity=-0.193 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHHHHHhccc--CCCC-ccc
Q 048587 99 KMEPERYYDAVNCIISMQS--QTGG-VPA 124 (150)
Q Consensus 99 ~~~~~~i~rav~wL~~~Qn--~dGG-W~~ 124 (150)
+...+.++++++|+++.+. ++|. |+.
T Consensus 226 ~~~~~~~~~~~~~l~~~~~~~~~g~~wp~ 254 (409)
T 2g0d_A 226 EASLSALQKIIFIYEKFELERKKQFLWKD 254 (409)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGTTCCCS
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCcCCC
Confidence 3456789999999977544 6788 876
No 108
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=41.51 E-value=15 Score=29.65 Aligned_cols=47 Identities=15% Similarity=0.071 Sum_probs=30.4
Q ss_pred hHHHHHHHHHhcC-CCCcccCCCCCHHHHHHHHHHHHhcccC-CCCccc
Q 048587 78 TAEALLCCLYFSM-LPPEIVGEKMEPERYYDAVNCIISMQSQ-TGGVPA 124 (150)
Q Consensus 78 Ta~al~aL~~~~~-~~~~~~g~~~~~~~i~rav~wL~~~Qn~-dGGW~~ 124 (150)
-++++.+|..+-+ .|.++.+.+.-.+..++-++.|+..|.+ ||-|-.
T Consensus 215 ~gW~~~gl~~~l~~lp~~~~~~~~~~~~~~~~a~~l~~~q~~~dG~W~~ 263 (373)
T 1nc5_A 215 IGWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSICRYQDKETGLWYQ 263 (373)
T ss_dssp HHHHHHHHHHHGGGSCTTCHHHHHHHHHHHHHHHHHHTTSCTTTSCCBS
T ss_pred HhHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhcCCCCCceee
Confidence 5788888877543 2221111112235567778999999997 999985
No 109
>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A*
Probab=36.61 E-value=11 Score=33.52 Aligned_cols=34 Identities=21% Similarity=-0.012 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCC
Q 048587 9 WDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGD 50 (150)
Q Consensus 9 wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~ 50 (150)
.|+..++++|+ .+. .+..++.+.+|.+.|.++ |+
T Consensus 349 RD~~~~~~~l~-~~~----p~~ar~~l~~~~~~Q~~~---G~ 382 (807)
T 1v7w_A 349 RDTAQDAISVP-HAN----PEMTRKRIVDLLRGQVKA---GY 382 (807)
T ss_dssp HHHHHHTTSCT-TTC----HHHHHHHHHHHHHTBCTT---SC
T ss_pred hHHhHHHHHHh-hcC----HHHHHHHHHHHHhccccC---CC
Confidence 57888877765 443 466888999999999986 75
No 110
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=36.10 E-value=37 Score=17.89 Aligned_cols=8 Identities=50% Similarity=0.517 Sum_probs=5.1
Q ss_pred HHHHHHHH
Q 048587 31 LMKAHDFL 38 (150)
Q Consensus 31 i~ra~~wL 38 (150)
+.+|++||
T Consensus 32 ~e~A~~~L 39 (40)
T 1z96_A 32 LDVAASFL 39 (40)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56666666
No 111
>1g2y_A Hepatocyte nuclear factor 1-alpha; dimerization domain, four-helix bundle, transcription factor, selenomethionine; 1.00A {Synthetic} SCOP: a.34.2.1 PDB: 1g39_A 1f93_E 1g2z_A 1jb6_A 2gyp_A
Probab=31.75 E-value=45 Score=17.68 Aligned_cols=18 Identities=33% Similarity=0.447 Sum_probs=13.8
Q ss_pred HHHHHHcCCCCCccHHHHHHH
Q 048587 15 VQALLACNLTDEIGPILMKAH 35 (150)
Q Consensus 15 ~~AL~~aG~~~~~~~~i~ra~ 35 (150)
+.||+++|.+ .+.+.+|+
T Consensus 13 L~aLL~SGls---Ke~LiqaL 30 (32)
T 1g2y_A 13 LAALLESGLS---KEALIQAL 30 (32)
T ss_dssp HHHHHHTTCC---HHHHHHHH
T ss_pred HHHHHHcCCc---HHHHHHHh
Confidence 6789999998 56677664
No 112
>3c68_A Uncharacterized protein YGJK; GH63, processing alpha-glucosidase, alpha/alpha barrel, hydrolase; HET: BMA; 1.50A {Escherichia coli} PDB: 3c67_A* 2ds3_A* 3c69_A* 3d3i_A
Probab=31.25 E-value=2.6e+02 Score=24.88 Aligned_cols=31 Identities=16% Similarity=0.104 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhcc
Q 048587 8 TWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQV 43 (150)
Q Consensus 8 ~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~ 43 (150)
.||+.+++++|+.. . .+..++.++.|.+.|+
T Consensus 323 ~wDs~~~a~gL~~~--~---~elAr~~L~~l~~~Q~ 353 (761)
T 3c68_A 323 PWDTWKQAFAMAHF--N---PDIAKENIRAVFSWQI 353 (761)
T ss_dssp HHHHHHHHHHHTTT--C---HHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHc--C---HHHHHHHHHHHHHhhh
Confidence 69999999988632 2 3567888999999884
No 113
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*
Probab=31.07 E-value=1.3e+02 Score=26.96 Aligned_cols=101 Identities=10% Similarity=-0.018 Sum_probs=60.2
Q ss_pred chhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHH
Q 048587 7 QTWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCL 86 (150)
Q Consensus 7 ~~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~ 86 (150)
...|+....++|+-.. .+.+++.+..+.+.|..+ |+....+... .+.+. ..-...-+|++.+.+.++.
T Consensus 365 G~RD~~qd~~~~~~~~-----pe~ar~~il~~~~~Q~~d---G~v~h~~~p~--~~~g~--~~~~~~~~D~~lWl~~av~ 432 (822)
T 3rrs_A 365 GFRDSNQDLLGFVHLI-----PERARERIIDIASTQFAD---GSAYHQYQPL--TKRGN--NDIGSGFNDDPLWLIAGTA 432 (822)
T ss_dssp EHHHHHHHHHHHTTTC-----HHHHHHHHHHHHTTCCTT---SCCCSEEETT--TTEEC--TTTCSCBTTHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcC-----HHHHHHHHHHHHHhhccc---CcccceecCc--CCCCc--cCCCCcccchHhHHHHHHH
Confidence 4578888888886431 467888999999999987 8765443211 11111 1111234788999999886
Q ss_pred HhcC-C-CCcccCCCC-----------CHHHHHHHHHHHHhcccCC
Q 048587 87 YFSM-L-PPEIVGEKM-----------EPERYYDAVNCIISMQSQT 119 (150)
Q Consensus 87 ~~~~-~-~~~~~g~~~-----------~~~~i~rav~wL~~~Qn~d 119 (150)
..-+ + ..+.+.+.+ --+.++|+++|++....++
T Consensus 433 ~Yi~~TGD~~~L~e~~p~~~~~~~~~tl~eh~~ra~~~~~~~~g~~ 478 (822)
T 3rrs_A 433 AYIKETGDFSILDEPVPFDNEPGSEVPLFEHLTRSFEFTVTHRGPH 478 (822)
T ss_dssp HHHHHHCCGGGGGSEECSTTCTTCCEEHHHHHHHHHHHHHHSBCTT
T ss_pred HHHHHHCCHHHHHhhhhhhccccccccHHHHHHHHHHHHHhcCCCC
Confidence 5411 0 000111100 1258999999999755544
No 114
>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP}
Probab=31.01 E-value=58 Score=29.61 Aligned_cols=92 Identities=10% Similarity=0.071 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHH-cCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHHH
Q 048587 9 WDCAFAVQALLA-CNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLY 87 (150)
Q Consensus 9 wdTala~~AL~~-aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~ 87 (150)
+|+.+..++++. .|. .+.+++.+++|...|..+ |.+....+ .+|. ....|-+.+.+.++..
T Consensus 578 gD~~~~a~~~l~~~g~----~~lar~~L~~l~~~Q~~d---G~ip~~~p----~~~~-------~~~~~~~~~~i~~~~~ 639 (956)
T 2okx_A 578 GDSRNEALVNYYVFGE----TEIVERCLNLVPGSADET---PLYLDQVP----SAWS-------SVIPNWTFFWILACRE 639 (956)
T ss_dssp HHHHHHHHHHHHHTCC----CHHHHHHHHHGGGGTTTC---TTCCSBSS----CSSC-------CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC----HHHHHHHHHHHHhhcccC---CCcCcccc----cccc-------CCCcChHHHHHHHHHH
Confidence 388888777654 463 467899999999999876 76543222 2221 1122334444444433
Q ss_pred hcCCCCcccCCC----CCHHHHHHHHHHHHhcccCCCCc
Q 048587 88 FSMLPPEIVGEK----MEPERYYDAVNCIISMQSQTGGV 122 (150)
Q Consensus 88 ~~~~~~~~~g~~----~~~~~i~rav~wL~~~Qn~dGGW 122 (150)
.-.. .|.. ..-+.++++++|+.+..+++|=|
T Consensus 640 yy~~----tGD~~~L~e~yp~lk~~l~~~~~~~d~~GLl 674 (956)
T 2okx_A 640 YAAH----TGNEAFAARIWPAVKHTLTHYLEHIDDSGLL 674 (956)
T ss_dssp HHHH----HTCHHHHHHHHHHHHHHHHHHHTTBCTTSSB
T ss_pred HHHH----hCCHHHHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 2110 0111 12367899999999877667644
No 115
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A
Probab=29.25 E-value=1.1e+02 Score=24.34 Aligned_cols=31 Identities=6% Similarity=-0.066 Sum_probs=20.8
Q ss_pred cCC-CCCccHHHHHHHHHHHhhccCCCCCCC-cc
Q 048587 21 CNL-TDEIGPILMKAHDFLKTSQVTDNPPGD-FE 52 (150)
Q Consensus 21 aG~-~~~~~~~i~ra~~wL~~~Q~~d~~~G~-~~ 52 (150)
.|. .+.+.+.++++++|+++.+..+ ..|. |.
T Consensus 221 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~g~~wp 253 (409)
T 2g0d_A 221 KGYSNEASLSALQKIIFIYEKFELER-KKQFLWK 253 (409)
T ss_dssp HTCCCHHHHHHHHHHHHHHHHHCCCG-GGTTCCC
T ss_pred hCCCChhHHHHHHHHHHHHHHHHhcC-CCCCcCC
Confidence 353 4456788999999998876642 2365 54
No 116
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=28.13 E-value=42 Score=22.92 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=16.1
Q ss_pred HHHHHHHcCCCCCccHHHHHHHHHHHhhcc
Q 048587 14 AVQALLACNLTDEIGPILMKAHDFLKTSQV 43 (150)
Q Consensus 14 a~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~ 43 (150)
+..||...|. .+.++++||..++.
T Consensus 25 ~~kAl~~~g~------~~e~amewL~~h~~ 48 (118)
T 4ae4_A 25 VLRAMKAAGA------NIEQILDYLFAHGQ 48 (118)
T ss_dssp HHHHHHHHCS------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHCc------CHHHHHHHHHHhch
Confidence 3445555553 16789999999874
No 117
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua}
Probab=27.68 E-value=62 Score=25.86 Aligned_cols=35 Identities=20% Similarity=0.073 Sum_probs=26.4
Q ss_pred chhHHHHHHHHHHHcCC---CCCccHHHHHHHHHHHhh
Q 048587 7 QTWDCAFAVQALLACNL---TDEIGPILMKAHDFLKTS 41 (150)
Q Consensus 7 ~~wdTala~~AL~~aG~---~~~~~~~i~ra~~wL~~~ 41 (150)
.-|.++.++.+|+.+.. +++|.+.+.+++++++..
T Consensus 44 ~yWW~a~~~~~l~d~~~~tgd~~y~~~a~~~~~~~~~~ 81 (349)
T 3k7x_A 44 NYWWLAHLVEVRLDAYLRTKKQADLEVAEKTYLHNKNR 81 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 55889998888887633 234778888999988774
No 118
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=26.83 E-value=1.5e+02 Score=26.48 Aligned_cols=100 Identities=11% Similarity=0.001 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHHH
Q 048587 8 TWDCAFAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLY 87 (150)
Q Consensus 8 ~wdTala~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~ 87 (150)
..|+....++|+-.. .+.+++.+..+.+.|..+ |+....+.... +.+.. .-...-+|++.+-+.++..
T Consensus 359 ~RD~~qd~~~~~~~~-----p~~~r~~il~~~~~Q~~d---G~~~h~~~p~~--~~g~~--~~~~~~~D~~lW~i~av~~ 426 (811)
T 3qde_A 359 FRDSNQDLLGFVHQI-----PERARERLLDLAATQLED---GSAYHQYQPLT--KKGNN--EIGSNFNDDPLWLILATAA 426 (811)
T ss_dssp HHHHHHHHHTTTTTC-----HHHHHHHHHHHHTTBCTT---SCBCSEECTTT--CCEEC--TTCCCBTTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcC-----HHHHHHHHHHHHhhcccC---CCccceecCCC--CCCCC--CCCCCcccchhHHHHHHHH
Confidence 478888887775421 467888999999999987 88654432111 11111 1112347889999888865
Q ss_pred hcCC--CCcccCCCC-----------CHHHHHHHHHHHHhcccCC
Q 048587 88 FSML--PPEIVGEKM-----------EPERYYDAVNCIISMQSQT 119 (150)
Q Consensus 88 ~~~~--~~~~~g~~~-----------~~~~i~rav~wL~~~Qn~d 119 (150)
.-+. ..+.+.+.+ -=+.++|+++|++....++
T Consensus 427 Y~~~TGD~~~L~e~~p~~~~~~~~~tl~eh~~ra~~~~~~~~g~~ 471 (811)
T 3qde_A 427 YIKETGDYSILKEQVPFNNDPSKADTMFEHLTRSFYHVVNNLGPH 471 (811)
T ss_dssp HHHHHCCGGGGGSEEEETTEEEEEEEHHHHHHHHHHHHHTCBCTT
T ss_pred HHHHHCCHHHHHhhhhhhcCCcccccHHHHHHHHHHHHHhcCCCC
Confidence 4110 001111100 1258999999999755554
No 119
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=25.69 E-value=65 Score=19.72 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=17.5
Q ss_pred HHHHHHcCCCCCccHHHHHHHHHHHhhccC
Q 048587 15 VQALLACNLTDEIGPILMKAHDFLKTSQVT 44 (150)
Q Consensus 15 ~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~ 44 (150)
=.||.+++-+ |.+|++||+.+...
T Consensus 28 KkAL~e~~GD------i~~Ai~~Lr~kg~~ 51 (64)
T 2cp9_A 28 KKALETCGGD------LKQAEIWLHKEAQK 51 (64)
T ss_dssp HHHHHHHTSC------HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCC------HHHHHHHHHHHhHH
Confidence 3566666543 89999999987654
No 120
>3s88_J GP2, GP2, envelope glycoprotein; glycosylation, viral membrane, immune system-viral protein C; HET: NAG; 3.35A {Sudan ebolavirus} PDB: 3ve0_J* 3csy_J* 2lcy_A 2lcz_A
Probab=24.66 E-value=81 Score=22.70 Aligned_cols=36 Identities=22% Similarity=0.077 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHcCCCC-CccHHHHHHHHHHHhhcc
Q 048587 8 TWDCAFAVQALLACNLTD-EIGPILMKAHDFLKTSQV 43 (150)
Q Consensus 8 ~wdTala~~AL~~aG~~~-~~~~~i~ra~~wL~~~Q~ 43 (150)
.-.|..+++.|+++--.- .+.-.=++|++||+..|-
T Consensus 90 AN~Tt~~L~l~Lr~ttelRt~sl~NR~AIDFLL~rwG 126 (167)
T 3s88_J 90 ANETTQALQLFLRATTELRTYTILNRKAIDFLLRRWG 126 (167)
T ss_dssp HHHHHHHHHHHHHHCCCSEECTHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhC
Confidence 346889999999874332 244455789999998764
No 121
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=23.67 E-value=57 Score=26.58 Aligned_cols=24 Identities=8% Similarity=0.365 Sum_probs=19.5
Q ss_pred ccHHHHHHHHHHHhhccCCCCCCCccc
Q 048587 27 IGPILMKAHDFLKTSQVTDNPPGDFES 53 (150)
Q Consensus 27 ~~~~i~ra~~wL~~~Q~~d~~~G~~~~ 53 (150)
+.+.++++++|+++.+.++ |.|..
T Consensus 252 ~~~~i~~~l~~l~~~~~~~---g~wp~ 275 (411)
T 3e6u_A 252 LHSLVKPSVDYVCQLKFPS---GNYPP 275 (411)
T ss_dssp HHHTHHHHHHHHHHTCCTT---SCCCS
T ss_pred HHHHHHHHHHHHHHhhccC---CCCCC
Confidence 5578999999999998875 77754
No 122
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=23.16 E-value=1.5e+02 Score=23.38 Aligned_cols=84 Identities=6% Similarity=-0.021 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHH
Q 048587 31 LMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERYYDAVN 110 (150)
Q Consensus 31 i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i~rav~ 110 (150)
+.+++.|........ ..|+|...+.. .| .+... .-.+...+..|.++..+...-. ..|.+...+.++++++
T Consensus 19 ~~~~l~~w~~~~~D~-~~GGf~~~~~~--dg-~~~~~----~k~l~~nar~l~~~a~a~~~~~-~~~~~~~l~~A~~~~~ 89 (402)
T 1fp3_A 19 LDRVMAFWLEHSHDR-EHGGFFTCLGR--DG-RVYDD----LKYVWLQGRQVWMYCRLYRKLE-RFHRPELLDAAKAGGE 89 (402)
T ss_dssp HHHHHHHHHHHSBCT-TTSSBCCCBCT--TS-CBSCC----CEEHHHHHHHHHHHHHHHHHCG-GGCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCC-CCCCEeeEECC--CC-CCCCC----ccchhhhHHHHHHHHHHHHHhc-ccCCHHHHHHHHHHHH
Confidence 577888887533321 23665432211 11 12111 1224456777777765432000 0033345678899999
Q ss_pred HHHhc-ccCCC--Ccc
Q 048587 111 CIISM-QSQTG--GVP 123 (150)
Q Consensus 111 wL~~~-Qn~dG--GW~ 123 (150)
||+.. +.++| ||-
T Consensus 90 fl~~~~~d~~gg~g~~ 105 (402)
T 1fp3_A 90 FLLRHARVAPPEKKCA 105 (402)
T ss_dssp HHHHHTBSSTTSCCBC
T ss_pred HHHHhccCcCCCCceE
Confidence 99985 66665 776
No 123
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A*
Probab=23.11 E-value=81 Score=26.18 Aligned_cols=69 Identities=16% Similarity=0.171 Sum_probs=36.6
Q ss_pred CccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHHHhcCCCCcccCCCCCHHHH
Q 048587 26 EIGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFSMLPPEIVGEKMEPERY 105 (150)
Q Consensus 26 ~~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~g~~~~~~~i 105 (150)
.+...|++.++++....... | ||+.|- ..+.+-.-.+..+++++....- .+.....+..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~t--p------------~Gl~~~--~~WGs~~~~~~~a~l~~~~~~~-----~~~~~y~~~A 333 (441)
T 1ia6_A 275 IYKDAIEFNFNYWKTQVTTT--P------------GGLKWL--SNWGVLRYAAAESMVMLVYCKQ-----NPDQSLLDLA 333 (441)
T ss_dssp HHHHHHHHHHHHHHHTSCBC--T------------TSCBCC--CSTTHHHHHHHHHHHHHHHHHH-----SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccC--C------------CCceec--CCcchHHHHHHHHHHHHHHHhh-----cCHHHHHHHH
Confidence 46677888887776333221 3 333321 1111222235666666655331 1222345667
Q ss_pred HHHHHHHHhc
Q 048587 106 YDAVNCIISM 115 (150)
Q Consensus 106 ~rav~wL~~~ 115 (150)
++.++||+..
T Consensus 334 ~~qldYiLG~ 343 (441)
T 1ia6_A 334 KKQVDYILGD 343 (441)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHhcCC
Confidence 7899999994
No 124
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A
Probab=22.60 E-value=61 Score=27.40 Aligned_cols=41 Identities=12% Similarity=0.046 Sum_probs=23.8
Q ss_pred chHHHHHHHHHhcCCCCcccCCCCC---HHHHHHHHHH---HHhcccCCCCcc
Q 048587 77 CTAEALLCCLYFSMLPPEIVGEKME---PERYYDAVNC---IISMQSQTGGVP 123 (150)
Q Consensus 77 ~Ta~al~aL~~~~~~~~~~~g~~~~---~~~i~rav~w---L~~~Qn~dGGW~ 123 (150)
|.+.++.+|+.++.. +. .. .+.+++-++| |....|++|.|.
T Consensus 70 Daa~t~~aL~~~g~~-----~~-~~~~l~~~a~~y~~~~~~lq~~~~~~G~~~ 116 (492)
T 2fba_A 70 DSAITFLTVLSELED-----NN-FNTTLAKAVEYYINTSYNLQRTSNPSGSFD 116 (492)
T ss_dssp HHHHHHHHHHHHHHH-----TT-TCHHHHHHHHHHHHHHHHHHTSCBTTBCTT
T ss_pred hHHHHHHHHHHhCcc-----cc-cccchHHHHHHHHHHHHHHhcccCCCCCcC
Confidence 567777777776520 00 01 3455666665 444448899987
No 125
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=22.21 E-value=1e+02 Score=20.73 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=22.0
Q ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHHhhccCCCCCCCccc
Q 048587 13 FAVQALLACNLTDEIGPILMKAHDFLKTSQVTDNPPGDFES 53 (150)
Q Consensus 13 la~~AL~~aG~~~~~~~~i~ra~~wL~~~Q~~d~~~G~~~~ 53 (150)
-|..||.+++.+ |.+|+.+|++.-.. .|.|..
T Consensus 56 eAr~AL~~~ngD------l~~AI~~Lleg~~~---~~~W~~ 87 (104)
T 1wj7_A 56 ECVIALHDCNGD------VNRAINVLLEGNPD---THSWEM 87 (104)
T ss_dssp HHHHHHHHHTSC------HHHHHHHHHTCSSS---CSSCSS
T ss_pred HHHHHHHHcCCC------HHHHHHHHHhCCCc---CCceee
Confidence 456667666654 78999999986542 267764
No 126
>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A {Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A* 3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A*
Probab=22.18 E-value=56 Score=27.56 Aligned_cols=36 Identities=11% Similarity=0.115 Sum_probs=24.8
Q ss_pred chHHHHHHHH---HhcCCCCcccCCCCCHHHHHHHHHHHHh---cc---cCCCCcc
Q 048587 77 CTAEALLCCL---YFSMLPPEIVGEKMEPERYYDAVNCIIS---MQ---SQTGGVP 123 (150)
Q Consensus 77 ~Ta~al~aL~---~~~~~~~~~~g~~~~~~~i~rav~wL~~---~Q---n~dGGW~ 123 (150)
|.+.++.||+ .++ ..+..++..+||.. .| +++|.|.
T Consensus 55 Daa~t~~aL~~~~~~G-----------~~~~a~~~~~~l~~~~~lQ~~~~~~G~l~ 99 (472)
T 1gai_A 55 DSGLVIKTLVDLFRNG-----------DTDLLSTIEHYISSQAIIQGVSNPSGDLS 99 (472)
T ss_dssp HHHHHHHHHHHHHHTT-----------CGGGHHHHHHHHHHHHHHHHCCBTTBCTT
T ss_pred hHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHHhhcccCCCCccc
Confidence 6778888887 655 23445677777776 44 8889885
No 127
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=21.90 E-value=71 Score=21.59 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=10.4
Q ss_pred HHHHHHHHHhhcc
Q 048587 31 LMKAHDFLKTSQV 43 (150)
Q Consensus 31 i~ra~~wL~~~Q~ 43 (150)
+.+|++||.++..
T Consensus 106 ~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 106 LERALDWIFSHPE 118 (126)
T ss_dssp HHHHHHHHHTCCS
T ss_pred HHHHHHHHHhCCC
Confidence 7789999988654
No 128
>1dj7_A Ferredoxin thioredoxin reductase: catalytic chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: g.36.1.1 PDB: 2pu9_A 2pvo_A 2puo_A 2puk_A 2pvg_A 2pvd_A
Probab=20.08 E-value=77 Score=21.78 Aligned_cols=41 Identities=12% Similarity=-0.017 Sum_probs=31.2
Q ss_pred ccHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCccccCCCCCCCCcccchHHHHHHHHHhc
Q 048587 27 IGPILMKAHDFLKTSQVTDNPPGDFESMFRHTSKGGWTFSNKDHGWPVSDCTAEALLCCLYFS 89 (150)
Q Consensus 27 ~~~~i~ra~~wL~~~Q~~d~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~ 89 (150)
....+.+..+|+.+-+... ||-| .||-+.|..++++|+.-.
T Consensus 7 ~~~~~e~~~~f~ek~ae~~----------------G~~~------NpD~evt~~vi~GLa~nk 47 (117)
T 1dj7_A 7 NNKTLAAMKNFAEQYAKRT----------------DTYF------CSDLSVTAVVIEGLARHK 47 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHT----------------TCBC------BSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHh----------------CCEE------CCCHHHHHHHHHHHHHHH
Confidence 3577888889998876652 3444 489999999999998743
Done!