Query 048588
Match_columns 615
No_of_seqs 268 out of 896
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 10:56:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048588.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048588hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1134 Uncharacterized conser 100.0 4E-107 9E-112 922.5 47.2 561 1-564 151-728 (728)
2 COG5594 Uncharacterized integr 100.0 4.3E-91 9.4E-96 767.7 40.1 497 2-502 164-721 (827)
3 PF02714 DUF221: Domain of unk 100.0 3.4E-69 7.4E-74 569.9 35.0 323 143-466 1-325 (325)
4 PF14703 DUF4463: Domain of un 99.1 4.1E-11 8.9E-16 101.8 5.2 65 74-138 1-85 (85)
5 PF04547 Anoctamin: Calcium-ac 99.1 7.7E-08 1.7E-12 106.7 31.0 266 182-467 108-398 (452)
6 KOG2513 Protein required for m 98.0 0.0051 1.1E-07 68.6 26.8 253 185-467 260-557 (647)
7 TIGR01659 sex-lethal sex-letha 95.4 0.15 3.2E-06 54.8 11.7 40 35-79 105-144 (346)
8 TIGR01628 PABP-1234 polyadenyl 93.3 0.88 1.9E-05 52.0 12.8 156 39-199 2-201 (562)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 92.8 0.96 2.1E-05 48.2 11.5 37 37-78 3-39 (352)
10 TIGR01648 hnRNP-R-Q heterogene 92.4 1.3 2.8E-05 50.8 12.2 39 36-79 57-95 (578)
11 PLN03134 glycine-rich RNA-bind 92.4 1.2 2.5E-05 41.8 10.0 76 37-173 34-111 (144)
12 TIGR01661 ELAV_HUD_SF ELAV/HuD 90.2 1.4 3.1E-05 46.9 9.4 35 38-77 270-304 (352)
13 TIGR01648 hnRNP-R-Q heterogene 89.8 1.4 3.1E-05 50.3 9.3 73 37-176 233-307 (578)
14 KOG0144 RNA-binding protein CU 89.7 0.6 1.3E-05 50.3 5.7 37 38-79 35-71 (510)
15 KOG0122 Translation initiation 89.5 1.5 3.2E-05 44.2 7.9 77 36-173 188-266 (270)
16 PF07810 TMC: TMC domain; Int 88.5 1.3 2.8E-05 39.6 6.2 56 379-437 47-105 (111)
17 KOG2514 Uncharacterized conser 87.5 5.1 0.00011 47.0 11.6 53 245-297 435-487 (861)
18 TIGR01628 PABP-1234 polyadenyl 82.8 6.1 0.00013 45.2 9.8 36 38-78 179-214 (562)
19 KOG0125 Ataxin 2-binding prote 82.7 7.9 0.00017 40.7 9.3 87 37-187 96-195 (376)
20 TIGR01622 SF-CC1 splicing fact 80.0 15 0.00033 40.6 11.4 38 36-78 88-125 (457)
21 PLN03121 nucleic acid binding 77.9 2.9 6.4E-05 42.3 4.4 37 36-77 4-40 (243)
22 KOG0117 Heterogeneous nuclear 76.5 14 0.00031 40.3 9.2 123 38-173 84-245 (506)
23 KOG0109 RNA-binding protein LA 76.4 4.9 0.00011 41.5 5.5 112 40-160 5-132 (346)
24 PF14259 RRM_6: RNA recognitio 74.8 5.3 0.00012 31.6 4.4 31 40-75 1-31 (70)
25 TIGR01645 half-pint poly-U bin 74.3 20 0.00043 41.5 10.3 38 36-78 106-143 (612)
26 TIGR01649 hnRNP-L_PTB hnRNP-L/ 73.7 11 0.00023 42.5 8.0 36 37-77 2-37 (481)
27 KOG0148 Apoptosis-promoting RN 73.1 5.6 0.00012 40.7 4.9 133 37-196 6-184 (321)
28 PF04059 RRM_2: RNA recognitio 73.0 5.6 0.00012 34.7 4.3 23 39-61 3-26 (97)
29 PF00076 RRM_1: RNA recognitio 71.7 5.9 0.00013 30.8 4.0 32 40-76 1-32 (70)
30 PF02654 CobS: Cobalamin-5-pho 69.2 69 0.0015 32.4 12.0 124 369-497 85-213 (235)
31 PLN03120 nucleic acid binding 69.0 6.7 0.00015 40.3 4.5 35 37-76 4-38 (260)
32 KOG4211 Splicing factor hnRNP- 68.8 25 0.00053 39.0 8.9 37 35-77 8-44 (510)
33 PF15176 LRR19-TM: Leucine-ric 68.2 15 0.00033 32.0 5.8 24 435-458 8-31 (102)
34 TIGR01649 hnRNP-L_PTB hnRNP-L/ 66.4 52 0.0011 37.0 11.5 37 36-77 274-311 (481)
35 KOG0145 RNA-binding protein EL 65.5 30 0.00065 35.4 8.1 120 39-167 43-196 (360)
36 PF13893 RRM_5: RNA recognitio 65.3 8.1 0.00018 29.3 3.4 22 142-163 23-44 (56)
37 smart00362 RRM_2 RNA recogniti 65.0 10 0.00022 28.9 4.0 32 39-75 1-32 (72)
38 cd00590 RRM RRM (RNA recogniti 62.9 12 0.00027 28.6 4.2 32 39-75 1-32 (74)
39 KOG0149 Predicted RNA-binding 58.8 10 0.00022 38.1 3.5 18 142-159 56-73 (247)
40 TIGR01659 sex-lethal sex-letha 58.1 25 0.00055 37.8 6.7 56 142-197 151-214 (346)
41 TIGR01642 U2AF_lg U2 snRNP aux 56.8 60 0.0013 36.4 9.9 35 37-76 295-329 (509)
42 PF07292 NID: Nmi/IFP 35 domai 56.4 2.4 5.1E-05 36.3 -1.2 30 34-63 49-79 (88)
43 PRK12438 hypothetical protein; 55.7 4.8E+02 0.01 32.2 22.2 33 419-451 225-257 (991)
44 COG0368 CobS Cobalamin-5-phosp 53.1 2.6E+02 0.0057 28.6 12.8 127 369-498 89-218 (246)
45 PRK00068 hypothetical protein; 51.6 5.5E+02 0.012 31.7 23.1 33 417-451 225-257 (970)
46 KOG3832 Predicted amino acid t 50.8 13 0.00029 36.8 2.8 48 450-497 14-63 (319)
47 KOG4206 Spliceosomal protein s 50.3 17 0.00037 36.3 3.5 41 142-182 54-96 (221)
48 smart00361 RRM_1 RNA recogniti 49.4 20 0.00044 28.7 3.3 22 142-163 39-60 (70)
49 PF00076 RRM_1: RNA recognitio 48.9 21 0.00045 27.6 3.3 21 142-162 41-61 (70)
50 PF04835 Pox_A9: A9 protein co 48.6 39 0.00084 26.0 4.4 46 424-471 4-49 (54)
51 PF03699 UPF0182: Uncharacteri 43.4 6.6E+02 0.014 30.2 25.2 18 415-432 211-228 (774)
52 PF14362 DUF4407: Domain of un 41.1 1.6E+02 0.0035 30.7 9.5 29 406-434 44-72 (301)
53 PF14259 RRM_6: RNA recognitio 38.9 35 0.00077 26.7 3.2 20 142-161 41-60 (70)
54 PF03208 PRA1: PRA1 family pro 38.3 1.3E+02 0.0027 28.0 7.4 40 389-428 40-80 (153)
55 COG5438 Predicted multitransme 36.3 3E+02 0.0066 29.9 10.4 60 246-305 206-265 (385)
56 KOG0117 Heterogeneous nuclear 35.9 65 0.0014 35.5 5.4 56 142-197 127-185 (506)
57 PF06570 DUF1129: Protein of u 34.3 3.3E+02 0.0071 26.8 9.9 21 477-497 182-202 (206)
58 KOG0108 mRNA cleavage and poly 33.8 1.3E+02 0.0028 33.5 7.5 76 38-174 19-96 (435)
59 PF09726 Macoilin: Transmembra 33.2 2.8E+02 0.0061 32.9 10.5 53 390-448 73-125 (697)
60 KOG1457 RNA binding protein (c 32.7 50 0.0011 33.2 3.6 22 141-162 78-99 (284)
61 PF05620 DUF788: Protein of un 32.1 3.4E+02 0.0073 26.0 9.3 58 415-472 51-117 (170)
62 KOG1365 RNA-binding protein Fu 31.7 2.4E+02 0.0052 30.7 8.6 20 142-161 326-345 (508)
63 smart00362 RRM_2 RNA recogniti 28.9 63 0.0014 24.2 3.1 20 142-161 41-60 (72)
64 PRK09702 PTS system arbutin-sp 28.4 62 0.0013 31.0 3.4 23 410-432 12-34 (161)
65 PRK13735 conjugal transfer mat 28.3 1.6E+02 0.0034 36.1 7.6 52 389-448 323-374 (942)
66 COG0724 RNA-binding proteins ( 27.4 79 0.0017 30.9 4.3 35 37-76 115-149 (306)
67 smart00360 RRM RNA recognition 27.2 68 0.0015 23.9 3.0 20 142-161 40-59 (71)
68 PF09874 DUF2101: Predicted me 27.0 2.8E+02 0.0061 27.5 7.6 93 401-502 50-146 (206)
69 KOG0226 RNA-binding proteins [ 26.5 75 0.0016 32.6 3.7 19 142-160 234-252 (290)
70 PF06790 UPF0259: Uncharacteri 26.2 6.4E+02 0.014 25.9 10.6 83 278-360 71-154 (248)
71 cd00590 RRM RRM (RNA recogniti 25.8 83 0.0018 23.7 3.3 22 142-163 42-63 (74)
72 KOG2568 Predicted membrane pro 25.1 4.7E+02 0.01 29.8 9.9 19 442-460 379-397 (518)
73 KOG0107 Alternative splicing f 24.8 58 0.0013 31.6 2.5 31 142-172 49-81 (195)
74 PF10309 DUF2414: Protein of u 23.8 1.6E+02 0.0034 23.6 4.4 41 39-79 7-52 (62)
75 PLN03074 auxin influx permease 21.9 2.1E+02 0.0045 32.2 6.7 21 251-271 382-402 (473)
76 PF11823 DUF3343: Protein of u 20.8 1.3E+02 0.0028 24.4 3.6 35 142-179 3-37 (73)
77 KOG0127 Nucleolar protein fibr 20.7 1.2E+02 0.0026 34.4 4.2 33 38-75 293-325 (678)
78 TIGR00769 AAA ADP/ATP carrier 20.4 3.5E+02 0.0077 30.5 8.1 82 391-485 264-345 (472)
79 TIGR01622 SF-CC1 splicing fact 20.2 1.4E+02 0.003 33.0 4.8 39 35-78 184-222 (457)
80 KOG4050 Glutamate transporter 20.2 5.6E+02 0.012 24.6 7.9 15 172-186 33-48 (188)
81 PRK02868 hypothetical protein; 20.1 9.5E+02 0.021 24.6 16.1 82 277-358 67-149 (245)
No 1
>KOG1134 consensus Uncharacterized conserved protein [General function prediction only]
Probab=100.00 E-value=4.2e-107 Score=922.47 Aligned_cols=561 Identities=50% Similarity=0.878 Sum_probs=530.4
Q ss_pred CeEeehHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCc
Q 048588 1 MAYAFTFWTCYVLKREYEIVAAMRLHFLASEHRQPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANK 80 (615)
Q Consensus 1 ~~y~ft~~~~y~l~~ey~~~~~~R~~~l~s~~~~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~ 80 (615)
++|+|++|+||++++||++++.+|++|++++.++++++|++++|+|+..+.+..+.++++|...+|+++.+++++||.++
T Consensus 151 ~~y~~~~~~~~~l~~e~~~~~~~R~~~l~~~~~~~~~~s~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (728)
T KOG1134|consen 151 FTYLFTFFTLFILYREYKHVASIRQAYLASPKYRPDQSSVLVRNVPPPDGVSVSVIVRHFFSLNHPVKVRSHQVVYNESK 230 (728)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcCccccchhhhcccCCCCCchhhHHhhhhhccCCceeehhHHHhhHHH
Confidence 57999999999999999999999999999999999999999999998767778899999999999999999999999999
Q ss_pred hhHHHHHHHHH-HHHHHHHHHHhccCCCCCCcccccccCCCCCcccHHHHHHHHHhhhccce--------------EEEE
Q 048588 81 PSELVNKKKKM-QNWLDFYELKYSRNPSQKPSMKTGFLGLWGETVDPIDFYTSKIETLKKEA--------------TAFV 145 (615)
Q Consensus 81 L~~L~~~r~~~-~~~Le~~~~k~~~~~~~RP~~r~g~~g~~g~kVDaI~~~~~ki~~l~~~I--------------~AFV 145 (615)
+.++.++++++ ++++.+...+..+++++||++|.|+||++|+||||||||++|+++++++| +|||
T Consensus 231 l~~l~~~~~k~~~~~l~~~~~~~~~~~~~rP~~k~~~~~l~gkkvdai~yy~~kl~~l~~~i~~~~~~~~~~~~~~~aFV 310 (728)
T KOG1134|consen 231 LSKLLSKLKKLRENKLYKEHKRLKSNPKKRPKRKLGFCGLFGKKVDAIDYYSEKLQELSEDIEELRESLYEEKPLPAAFV 310 (728)
T ss_pred HHHHHHHHHHHhHHHHHHhhhhhccccccCCcceeeeeeeecceecHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 99999999999 66777666666666668999999999999999999999999999999887 9999
Q ss_pred EecCHHHHHHHHHhhcCCCCCcceeecCCCCCcceecccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 048588 146 SFKTRWGAAVCAQTQQTRNPTLWLTDWAPEPRDVYWDNLAIPFVSLTIRRLIIFVAYFFLTFFFMIPIAIVQSLANIEGI 225 (615)
Q Consensus 146 tF~s~~~A~~~~Q~~~~~~p~~~~v~~APeP~DIiW~NL~~~~~~r~~R~~~~~~~~~~l~if~~iPva~v~~l~nl~~L 225 (615)
||+|+++|+.|+|+.++.+|+.|.++.||||+||+|+|+.++..+|+.|+++++++++++++||++|+++||+++|+++|
T Consensus 311 tf~sr~~A~~~aq~~~~~~~~~w~~~~APeP~Di~W~nl~i~~~~~~~~~~~~~~~~~~li~f~~iPva~V~~l~nl~~l 390 (728)
T KOG1134|consen 311 TFKSRYGAAVAAQTQQSLNPTKWLTEFAPEPRDIYWDNLAISYVERYLRRFLVNVALFLLLFFWIIPVAFVQALTNLEGL 390 (728)
T ss_pred EEEeeHHHHHHHHhhhcCCCCceEEEecCCcccceecccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHhhhhhhHHHHHHHHHHHhhhhhc
Q 048588 226 EKALPFLKPIIEVKVIKSFIQGFLPGIALKIFLIFLPDILMLMSKSEGFISRAALGRRSATRYYIFQFINVFLGSIITGT 305 (615)
Q Consensus 226 ~~~~p~l~~~~~~~~~~~li~g~LPslil~i~~~llP~il~~ls~~eg~~S~S~~e~s~~~k~f~F~~~Nvflv~~l~gs 305 (615)
++.+||++.+.+.++++++++|+||++++.++++++|.++++++++|||.|+|+.|++++.|+|+|+++|+|++++++|+
T Consensus 391 ~~~~Pflk~i~~~~~i~~vI~gfLP~l~l~~~~~~lP~~l~~ls~~eG~~s~S~~e~~a~~k~~~F~~~nvFl~~~l~~s 470 (728)
T KOG1134|consen 391 SKVFPFLKPILEMKFISSVITGFLPTLALVIFLALLPPFLRYLSKLEGLISRSEEERSALNKYYIFLLVNVFLVVTLSGS 470 (728)
T ss_pred hhccchhhhhhhcchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHhHHHHHHhhhHHHhhhhHH
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCHHHHHhhhcCchhHHHHHHHHHHhhhhhhHhhhchHHHHHHHHHHhhccCCHHHHHHhcCC-CCC
Q 048588 306 AFQQLDNFMHQSANDIPKTIGISIPMKAMFFITYIMVDGWAGVAGEILRLKPLIVYHLKIFFLVKTVNDREEAMDP-GAI 384 (615)
Q Consensus 306 ~~~~l~~~~~~p~~~i~~~Lg~~lp~~s~FFi~yii~~~~~~~~~~Llr~~~li~~~~~~~~~~kT~re~~~~~~~-~~f 384 (615)
+++++..++++| .+++..+|.++|++++||++|++++||+|.++||+|+++|+++++++.+..+|||++++.++| +.+
T Consensus 471 a~~~~~~~l~~p-~~i~~~la~~lP~~a~Ff~~yii~~g~~g~~~ellrl~~Li~~~i~~~~~~~t~~~~~e~~~p~~~~ 549 (728)
T KOG1134|consen 471 ALRQLLSILSTP-RLIPKLLAAALPKQASFFITYIITSGWAGFAGELLRLVPLIIYLLKKLFLKSTPRDREERYEPLSSF 549 (728)
T ss_pred HHHHHHHHhcCH-hHHHHHHhhhChhhHHHHHHHHHHhccchhhHHHhcchhHHHHHHHHHHcccchhhhhhhcCCcccc
Confidence 999999999887 899999999999999999999999999999999999999999999999889999999999998 789
Q ss_pred CccchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhheeccCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 048588 385 GFNTGEPQIQLYFLLGLVYAVVAPFLLPFIIVFFALAFVVYIHQVINVYNQEYESAAAFWPDVHGRIITALIVSQLLLMG 464 (615)
Q Consensus 385 ~~g~~y~~~ll~~~i~l~Ys~i~Plilpf~~~yF~l~y~v~Ky~llyvy~~~~eSgG~~wp~~~~~i~~~l~l~ql~~~g 464 (615)
++|..||..+++++||++||+++|+|+|||++||+++|+|||||++|||.++|||||++||.+|+++++|+++||++|+|
T Consensus 550 ~~g~~yP~~~~~f~i~i~YsviaPlILpF~lvyF~l~y~vyr~ql~yvy~~~yes~g~~wp~ih~~ii~~l~l~ql~l~g 629 (728)
T KOG1134|consen 550 YFGTIYPRILLIFTIGICYSVIAPLILPFGLVYFCLAYLVYRYQLIYVYNQKYESGGRFWPDIHRRIIFGLILFQLILFG 629 (728)
T ss_pred chhhhccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhheeecccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccccchhHHHHHHHHHHHHHHHhhccccccccCChhHhhhcchhhhhcCCCc-chhhhhhhccCCCCCCCCCCC
Q 048588 465 LLSTKEAAQSTPLLITLPILTIWFHRFCKGRYEPAFVRYPLQEAMMKDTLERAREPNL-NLKSFLQIAYIHPVFKEVQES 543 (615)
Q Consensus 465 l~~lk~~~~~~~~~i~L~i~ti~f~~~~~~~f~~~~~~~pl~~a~~~d~~~~~~~~~~-~~~~~l~~~Y~~P~l~~~~~~ 543 (615)
+|++|+++..+.+++|++++|++||.+|+.+|.|.+..+|+++++.+|+.++..+++. +..+++.++|.||++.+.+++
T Consensus 630 l~~~k~~~~~s~~~~~l~~lTi~~~~~c~~rf~p~f~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 709 (728)
T KOG1134|consen 630 LFSLKKGAVASVLLFPLIVLTILFHIYCKGRFLPLFIAYPIEEAEVDDTLDEEREPNMENLYNYLKSAYVLPVFLSGSDS 709 (728)
T ss_pred HHHhccccccchHHHHHHHHHHHHHHHHhhhccccccccchhhhhhccCCccccCCChhhccccccccccCccccccccc
Confidence 9999999999999999999999999999999999999999999999999998777755 577889999999999988744
Q ss_pred CCCcCccccCCCCcccccccc
Q 048588 544 ESDPASEESDQEPVLIPTKRQ 564 (615)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~ 564 (615)
+. ..+..+++++++.|||+
T Consensus 710 ~~--~~~~~~~~~~~~~~~~~ 728 (728)
T KOG1134|consen 710 DG--SELSSEEKSPIVLTKRN 728 (728)
T ss_pred cc--cccccccCCcHhhcCCC
Confidence 32 11233444777777763
No 2
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=100.00 E-value=4.3e-91 Score=767.70 Aligned_cols=497 Identities=25% Similarity=0.462 Sum_probs=464.2
Q ss_pred eEeehHHHHHHHHHHHHHHHHHHHHHHcCCCCC---------CCcceEEEecCCCCC-CccHHHHHHHHhcccCCCceEE
Q 048588 2 AYAFTFWTCYVLKREYEIVAAMRLHFLASEHRQ---------PDQFTVLVRNVPPDP-DESVTQLVEHFFLVNHPDHYLT 71 (615)
Q Consensus 2 ~y~ft~~~~y~l~~ey~~~~~~R~~~l~s~~~~---------~~~~TVlV~~IP~~~-~~~~~~~l~~~F~~~~p~~v~~ 71 (615)
.|+|.++++|.+++||+.|..+||++++++.++ .+++||+++++|.+. ++ +.+.++|.+..-+++.+
T Consensus 164 ~~~f~~~vlfii~~el~~y~~lr~a~~~~p~y~qs~~~~~~~~ssRTvlis~LP~~~~~~---e~L~~~~~kl~~~~i~~ 240 (827)
T COG5594 164 SWFFFGYVLFIIFRELRFYVVLRQAYLRSPLYQQSLLTLQNNLSSRTVLISGLPSELRSD---EELKELFDKLKVGEIDS 240 (827)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHhhccCCCCceEEeecCChhhcCc---hhHHHHHhhcCeeeecc
Confidence 588999999999999999999999999998743 378999999999953 22 45888888888888888
Q ss_pred EEEEecCCchhHHHHHHHHHHHHHHHHHH-------Hh-----cc--------------------CCCCCCccccccc--
Q 048588 72 HQVVSNANKPSELVNKKKKMQNWLDFYEL-------KY-----SR--------------------NPSQKPSMKTGFL-- 117 (615)
Q Consensus 72 v~i~~d~~~L~~L~~~r~~~~~~Le~~~~-------k~-----~~--------------------~~~~RP~~r~g~~-- 117 (615)
..+|||.+.|+++.++|++..+++|.+.. |. .+ ..++||+||.+-.
T Consensus 241 ~~l~~~~~~l~~l~k~R~ki~~klE~~~~~~~~~~~K~~~~~~~K~~~~L~~~~~k~~~~~~~y~~~~~Rp~~~i~k~~~ 320 (827)
T COG5594 241 DVLCRDLGTLQELYKERDKILKKLEKALNELLNKLLKKSHLKTNKKSGKLTPSRKKEFEILPEYVPDKKRPKHRIKKLNK 320 (827)
T ss_pred chhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCCCCCCcccccchhhhhhccccccchhhhhhhhh
Confidence 89999999999999999999999985331 11 01 0145999998755
Q ss_pred CCCCCcccHHHHHHHHHhhhccce--------------EEEEEecCHHHHHHHHHhhcCCCCCcce-eecCCCCCcceec
Q 048588 118 GLWGETVDPIDFYTSKIETLKKEA--------------TAFVSFKTRWGAAVCAQTQQTRNPTLWL-TDWAPEPRDVYWD 182 (615)
Q Consensus 118 g~~g~kVDaI~~~~~ki~~l~~~I--------------~AFVtF~s~~~A~~~~Q~~~~~~p~~~~-v~~APeP~DIiW~ 182 (615)
|+.|+|||+||||++|+.+++++| +|||||+|+..||+|+|....+++.... ++.||+|+||+|+
T Consensus 321 ~i~gKkVdaI~y~s~~l~~l~~~i~~~r~~~~~~t~~~~~FItFkSq~~Aq~~aQ~~~~sr~~~~~~v~iapaPnDi~W~ 400 (827)
T COG5594 321 GIFGKKVDAIDYYSAKLTKLDAEIENARKSLYENTPTKSGFITFKSQASAQIAAQSQIYSRVLGKLKVEIAPAPNDIIWD 400 (827)
T ss_pred hhccceecHHHHHHHHHHHHHHHHHHHHhCccccCccccEEEEEehhHHHHHHHHhhhhhhhhcceeeeecCCccccccc
Confidence 789999999999999999999888 9999999999999999999999998776 9999999999999
Q ss_pred ccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhcCCcchh-hhhhhHHHHHHHHHHHHHHHHHHHHH
Q 048588 183 NLAIPFVSLTIRRLIIFVAYFFLTFFFMIPIAIVQSLANIEGIEKALPFLKPI-IEVKVIKSFIQGFLPGIALKIFLIFL 261 (615)
Q Consensus 183 NL~~~~~~r~~R~~~~~~~~~~l~if~~iPva~v~~l~nl~~L~~~~p~l~~~-~~~~~~~~li~g~LPslil~i~~~ll 261 (615)
|+..++++|..+++.+++++++++++|++|||+|+.++|+++|++.|||++.+ .+.|++.++++|+||++++.+++.++
T Consensus 401 Nl~ls~~~r~~k~~~~ni~~il~II~w~~pVa~v~~i~Nl~~l~~~~p~l~~il~~~~~l~~iltglLptv~~~~l~~iv 480 (827)
T COG5594 401 NLRLSRKERLFKRISANILFILLIILWAFPVAFVGTISNLNTLSSLWPFLKFILKDPPFLAGILTGLLPTVALSLLMSIV 480 (827)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHhhhhHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999 66789999999999999999999999
Q ss_pred HHHHHHHhhhccccchhHHHHhhhhhhHHHHHHHHHHHhhhhhcHHHHHHHHHhccCCCHHHHHhhhcCchhHHHHHHHH
Q 048588 262 PDILMLMSKSEGFISRAALGRRSATRYYIFQFINVFLGSIITGTAFQQLDNFMHQSANDIPKTIGISIPMKAMFFITYIM 341 (615)
Q Consensus 262 P~il~~ls~~eg~~S~S~~e~s~~~k~f~F~~~Nvflv~~l~gs~~~~l~~~~~~p~~~i~~~Lg~~lp~~s~FFi~yii 341 (615)
|+++++|+++||..|+|+.|+.++.|||.|+|+|+|++.+++|++.+.+.+.+++| .++..++|+++|+.|+||++||+
T Consensus 481 P~fir~Ls~~qG~~S~se~E~~~~~k~~~f~fv~~FlV~Tl~s~fss~v~~~~ke~-~s~~~llA~~lpk~SnFfi~~ii 559 (827)
T COG5594 481 PYFIRWLSYMQGLVSYSEEEIYVQNKYFAFLFVNLFLVVTLASSFSSIVWSLLKEP-TSIMTLLANNLPKASNFFISYII 559 (827)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHhhhhhheeeeehheeeehhHHHHHHHHHhcCh-HhHHHHHHhccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888888889998 89999999999999999999999
Q ss_pred HHhhhhhhHhhhchHHHHHHHHHHhhccCCHHHH-HHhcCCCCCCccchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 048588 342 VDGWAGVAGEILRLKPLIVYHLKIFFLVKTVNDR-EEAMDPGAIGFNTGEPQIQLYFLLGLVYAVVAPFLLPFIIVFFAL 420 (615)
Q Consensus 342 ~~~~~~~~~~Llr~~~li~~~~~~~~~~kT~re~-~~~~~~~~f~~g~~y~~~ll~~~i~l~Ys~i~Plilpf~~~yF~l 420 (615)
++|+++.+++|+|+++|+.+.++.+|..+|||++ +++..|+.|+||..||+.+++++|+++||+|+|+|+.||++||++
T Consensus 560 lqgl~~~~~~LLqi~~Ll~~~vl~kf~~~TpR~k~nr~~~~~~f~~G~v~P~~~~l~~I~icYSiisPlILlf~~v~F~~ 639 (827)
T COG5594 560 LQGLSGFPGTLLQIVPLLLSLVLGKFKDSTPRQKWNRLETPPSFQFGTVLPQPILLFTITICYSIISPLILLFGAVYFIL 639 (827)
T ss_pred HhcccccchHHHHHHHHHHHHhhhhhcCCChHHHHhhccCCCccccccccchhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999999888889999986 778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhheeccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHhhcccccc
Q 048588 421 AFVVYIHQVINVYNQEYESAAAFWPDVHGRIITALIVSQLLLMGLLSTKEAAQSTPLLITLPILTIWFHRFCKGRYEPAF 500 (615)
Q Consensus 421 ~y~v~Ky~llyvy~~~~eSgG~~wp~~~~~i~~~l~l~ql~~~gl~~lk~~~~~~~~~i~L~i~ti~f~~~~~~~f~~~~ 500 (615)
.|++|||+++|++++++||||++||.+++|+++|+++||+||+|+|++.++|..+.+++|++.+|++||.+|+..|.|+.
T Consensus 640 ~ylaykY~l~Yv~~~~~es~G~~w~~al~qiivGl~l~qv~l~glf~~~k~~~ls~~~~p~~~~Tvi~~~~~~~~f~pl~ 719 (827)
T COG5594 640 NYLAYKYNLIYVSNHSPESGGGYWPRALFQIIVGLYLFQVCLLGLFSLAKGWGLSVLLFPLIVFTVIFHYYFKKMFDPLS 719 (827)
T ss_pred HHHHHHHHhhhccCCCcccCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCcceeEeehHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999775
Q ss_pred cc
Q 048588 501 VR 502 (615)
Q Consensus 501 ~~ 502 (615)
.+
T Consensus 720 ~~ 721 (827)
T COG5594 720 KY 721 (827)
T ss_pred cc
Confidence 43
No 3
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=100.00 E-value=3.4e-69 Score=569.93 Aligned_cols=323 Identities=34% Similarity=0.660 Sum_probs=314.2
Q ss_pred EEEEecCHHHHHHHHHhhcCCCCCcceeecCCCCCcceecccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 048588 143 AFVSFKTRWGAAVCAQTQQTRNPTLWLTDWAPEPRDVYWDNLAIPFVSLTIRRLIIFVAYFFLTFFFMIPIAIVQSLANI 222 (615)
Q Consensus 143 AFVtF~s~~~A~~~~Q~~~~~~p~~~~v~~APeP~DIiW~NL~~~~~~r~~R~~~~~~~~~~l~if~~iPva~v~~l~nl 222 (615)
|||||+++++|+.|+|...+++|++|.+++||||+||+|+||+.+..+|..|++++++++++++++|++|++++++++|+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~~~~~~~l~i~~~ipv~~v~~l~~l 80 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIVNILLFLLIIFWTIPVAFVSALSNL 80 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeCCCcccccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhcCCcchh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHhhhhhhHHHHHHHHHHHhh
Q 048588 223 EGIEKALPFLKPI-IEVKVIKSFIQGFLPGIALKIFLIFLPDILMLMSKSEGFISRAALGRRSATRYYIFQFINVFLGSI 301 (615)
Q Consensus 223 ~~L~~~~p~l~~~-~~~~~~~~li~g~LPslil~i~~~llP~il~~ls~~eg~~S~S~~e~s~~~k~f~F~~~Nvflv~~ 301 (615)
+++++.+|++++. ..++...++++|++|++++.++|.++|.+++.++++|||.|+|+.|+++++|+|+|+++|++++++
T Consensus 81 ~~l~~~~~~l~~~~~~~~~~~~~i~~~lp~l~l~~~~~llp~ii~~ls~~e~~~s~S~~~~sv~~k~f~f~~~n~~lv~~ 160 (325)
T PF02714_consen 81 DTLKKVIPFLQWIISFSPWLLSLIQGILPSLLLSIFNALLPIIIRFLSKFEGHKSRSEVERSVLRKLFFFLFFNVFLVPS 160 (325)
T ss_pred cchhccchhhHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 456788899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcHHHHHHHHHhccCCCHHHHHhhhcCchhHHHHHHHHHHhhhhhhHhhhchHHHHHHHHHHhhccCCHHHHHHhc-C
Q 048588 302 ITGTAFQQLDNFMHQSANDIPKTIGISIPMKAMFFITYIMVDGWAGVAGEILRLKPLIVYHLKIFFLVKTVNDREEAM-D 380 (615)
Q Consensus 302 l~gs~~~~l~~~~~~p~~~i~~~Lg~~lp~~s~FFi~yii~~~~~~~~~~Llr~~~li~~~~~~~~~~kT~re~~~~~-~ 380 (615)
+++++++.+.+++++| +++.+.+|.++|++++||+||++++++.+.+++|+|+++++++.+++++..+||||+++.+ +
T Consensus 161 l~~~~~~~~~~~~~~~-~~i~~~l~~~lp~~s~ffi~~ii~~~~~~~~~~Ll~~~~l~~~~~~~~~~~~t~r~~~~~~~~ 239 (325)
T PF02714_consen 161 LAGTILSALKNIINNP-GSILQLLGNFLPNSSNFFINYIILQAFIGSPLELLRPPPLIIYYIRRKFFSKTPRELNELYTE 239 (325)
T ss_pred hhHHHHHHHHHHHhCc-chHHHHHHHHhhhhhHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCC
Confidence 9999999999999888 8999999999999999999999999999999999999999999998887779999999987 9
Q ss_pred CCCCCccchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhheeccCCCCCCCchHHHHHHHHHHHHHHHH
Q 048588 381 PGAIGFNTGEPQIQLYFLLGLVYAVVAPFLLPFIIVFFALAFVVYIHQVINVYNQEYESAAAFWPDVHGRIITALIVSQL 460 (615)
Q Consensus 381 ~~~f~~g~~y~~~ll~~~i~l~Ys~i~Plilpf~~~yF~l~y~v~Ky~llyvy~~~~eSgG~~wp~~~~~i~~~l~l~ql 460 (615)
+++|+||..||..+++++++++||+++|+++|+|++||++.|++||||++|||++++||||++||.+++++++|++++|+
T Consensus 240 ~~~f~~~~~ya~~l~v~~i~l~ys~i~Plil~~~~~yf~l~y~v~ky~llyvy~~~~es~G~~~~~~~~~~~~~l~i~q~ 319 (325)
T PF02714_consen 240 PPPFDYGYQYAQMLLVFFIGLFYSPIAPLILPFGLVYFLLKYFVDKYNLLYVYRPKYESGGRLWPTAFNRLLFGLVIFQF 319 (325)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhheeeeccCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 048588 461 LLMGLL 466 (615)
Q Consensus 461 ~~~gl~ 466 (615)
+|+|+|
T Consensus 320 ~~~g~f 325 (325)
T PF02714_consen 320 TMIGLF 325 (325)
T ss_pred HHHHhC
Confidence 999986
No 4
>PF14703 DUF4463: Domain of unknown function (DUF4463)
Probab=99.15 E-value=4.1e-11 Score=101.82 Aligned_cols=65 Identities=35% Similarity=0.671 Sum_probs=53.7
Q ss_pred EEecCCchhHHHHHHHHHHHHHHHHHHHhccCCC-------------------CCCcccccccCCCC-CcccHHHHHHHH
Q 048588 74 VVSNANKPSELVNKKKKMQNWLDFYELKYSRNPS-------------------QKPSMKTGFLGLWG-ETVDPIDFYTSK 133 (615)
Q Consensus 74 i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~-------------------~RP~~r~g~~g~~g-~kVDaI~~~~~k 133 (615)
|+||+++|++|+++|++++++||++..++.+++. .||+++.|++|++| +||||||||++|
T Consensus 1 i~rd~~~L~~Lv~~R~~~~~kLE~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kVDaIdyy~~e 80 (85)
T PF14703_consen 1 ICRDWSKLEKLVEEREKAVRKLESAESKYLKNANKRPKKRPKKKKKSESSSNKKRPRHRTGFLGLFGGKKVDAIDYYREE 80 (85)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCccccCccccccccCCCCCCCcCCCCCCCcchHHHHHHHH
Confidence 5899999999999999999999987765543221 24555669999998 999999999999
Q ss_pred Hhhhc
Q 048588 134 IETLK 138 (615)
Q Consensus 134 i~~l~ 138 (615)
|++|+
T Consensus 81 l~~Ln 85 (85)
T PF14703_consen 81 LKELN 85 (85)
T ss_pred HHHhC
Confidence 99885
No 5
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [].
Probab=99.12 E-value=7.7e-08 Score=106.71 Aligned_cols=266 Identities=12% Similarity=0.153 Sum_probs=165.6
Q ss_pred cccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hHhhcCCcchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 048588 182 DNLAIPFVSLTIRRLIIFVAYFFLTFFFMIPIAIVQSLANIEG-IEKALPFLKPIIEVKVIKSFIQGFLPGIALKIFLIF 260 (615)
Q Consensus 182 ~NL~~~~~~r~~R~~~~~~~~~~l~if~~iPva~v~~l~nl~~-L~~~~p~l~~~~~~~~~~~li~g~LPslil~i~~~l 260 (615)
.+...+.++|..|...+..++++++. +-++++.++..++. +.+..... ......+++.+++=++++.++|.+
T Consensus 108 ~~~~~p~~~r~~r~~~s~~ivl~~i~---i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~vl~~v~i~il~~i 180 (452)
T PF04547_consen 108 MEPYYPPWKRILRYLVSVPIVLLFIL---IVIGIVIGVFYLRIYLTEIYSGP----GKQFLASLIPTVLNAVVILILNFI 180 (452)
T ss_pred CccCCcHHHHhhhhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhccc----chhHHHHHHHHHHHHHHHHhhhhH
Confidence 35567778888888655544433322 22222223322221 11111000 012233444555555556666777
Q ss_pred HHHHHHHHhhhccccchhHHHHhhhhhhHHHHHHHHHHHhhhhhcHHHHHHHHHhccCCCHHHHHhhhcCchhHHHHHHH
Q 048588 261 LPDILMLMSKSEGFISRAALGRRSATRYYIFQFINVFLGSIITGTAFQQLDNFMHQSANDIPKTIGISIPMKAMFFITYI 340 (615)
Q Consensus 261 lP~il~~ls~~eg~~S~S~~e~s~~~k~f~F~~~Nvflv~~l~gs~~~~l~~~~~~p~~~i~~~Lg~~lp~~s~FFi~yi 340 (615)
...+...|+++|.|.|.|+.|.|...|.|.|+++|.+...... +.+.. ..++. -+. .+..-+.-+++++
T Consensus 181 y~~~a~~Lt~~EnhrT~~~ye~sli~K~F~f~fvn~y~~Lfyi-aF~~~---~~~~~-~~~------~~~~L~~ql~~~~ 249 (452)
T PF04547_consen 181 YRKLAKKLTDWENHRTESEYENSLIIKVFLFQFVNSYAPLFYI-AFFYG---VRQEE-CQP------CLSRLRIQLFTIM 249 (452)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh---hcccc-cCC------CHHHHHHHHHHHH
Confidence 7788889999999999999999999999999999998754443 22221 11111 000 1112233344455
Q ss_pred HHHhhhhhhHhhhchHHHHHHHHHHh-hc---cCCH-----------H---HHHHhcCCCCCCc---cchHHHHHHHHHH
Q 048588 341 MVDGWAGVAGEILRLKPLIVYHLKIF-FL---VKTV-----------N---DREEAMDPGAIGF---NTGEPQIQLYFLL 399 (615)
Q Consensus 341 i~~~~~~~~~~Llr~~~li~~~~~~~-~~---~kT~-----------r---e~~~~~~~~~f~~---g~~y~~~ll~~~i 399 (615)
+++-+.+...|.. .|.+.+..+++ .. .+++ + +.++-.+.++++- -..|..+..-+-.
T Consensus 250 ~~~qi~~~~~e~~--~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~y~~~g~~~dY~emviQFGy 327 (452)
T PF04547_consen 250 VTKQIINNLLEVV--LPYLKKRYRRKKIRKKQRKKQQDERQENEEENQFLQQWEKEYELPPYDPDGLFDDYLEMVIQFGY 327 (452)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhhhcccccccccccccchHHHHHHHhcCCCCCcCCchHHHHHHHHHHHH
Confidence 5555555556653 55655555433 11 1111 0 0111134555554 3789999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhheeccCC---CCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 048588 400 GLVYAVVAPFLLPFIIVFFALAFVVYIHQVINVYNQEY---ESAAAFWPDVHGRIITALIVSQLLLMGLLS 467 (615)
Q Consensus 400 ~l~Ys~i~Plilpf~~~yF~l~y~v~Ky~llyvy~~~~---eSgG~~wp~~~~~i~~~l~l~ql~~~gl~~ 467 (615)
...|+++.|+...++++.-++-.-+|++.+++.++++. .++=..|-.++.-+...-++....++++.+
T Consensus 328 v~lF~~afPlapl~allnN~~eir~D~~Kl~~~~rRP~p~~~~~IG~W~~il~~i~~lav~tN~~li~~~s 398 (452)
T PF04547_consen 328 VTLFSAAFPLAPLFALLNNIVEIRLDAFKLLYLYRRPVPRRASSIGIWNNILEIISWLAVITNAALIAFTS 398 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999997653 233357999999888888888877777764
No 6
>KOG2513 consensus Protein required for meiotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=97.96 E-value=0.0051 Score=68.64 Aligned_cols=253 Identities=13% Similarity=0.188 Sum_probs=145.0
Q ss_pred ccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhcCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 048588 185 AIPFVSLTIRRLIIFVAYFFLTFFFMIPIAIVQSLANIEGIEKALPFLKPIIEVKVIKSFIQGFLPGIALKIFLIFLPDI 264 (615)
Q Consensus 185 ~~~~~~r~~R~~~~~~~~~~l~if~~iPva~v~~l~nl~~L~~~~p~l~~~~~~~~~~~li~g~LPslil~i~~~llP~i 264 (615)
..+.|.|.+|+..+.+-+++++++...++.+...-...-. ......| +.+ +-.++|++++.++..++..+
T Consensus 260 ~yp~w~~~~~~~~vsvPv~l~c~~i~l~f~l~~f~ie~~~--------~s~~~~~-~~s-ils~lP~iv~~~li~~~t~~ 329 (647)
T KOG2513|consen 260 YYPEWKRILRRYLVSVPVILLCLCILLSFMLYCFQIEVWV--------LSDYGGP-LIS-ILSYLPTIVYAVLIPVLTRI 329 (647)
T ss_pred cccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHcCCc-hHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3466888999999888887777766666655543322111 1111223 223 34678988888887777666
Q ss_pred HHH----HhhhccccchhHHHHhhhhhhHHHHHHHHHHHhhhhhcHHHHHHHHHhccCCCHHHHHhhhcCchhHHHHHHH
Q 048588 265 LML----MSKSEGFISRAALGRRSATRYYIFQFINVFLGSIITGTAFQQLDNFMHQSANDIPKTIGISIPMKAMFFITYI 340 (615)
Q Consensus 265 l~~----ls~~eg~~S~S~~e~s~~~k~f~F~~~Nvflv~~l~gs~~~~l~~~~~~p~~~i~~~Lg~~lp~~s~FFi~yi 340 (615)
..+ |.++|.|.++|..+++...|.+.|+|+|.++.-...+-+..-+. ..-..++.-+-..-.
T Consensus 330 Y~k~Ae~Lt~~EN~r~~s~y~~hli~K~~lf~f~nsy~sLFyi~f~l~d~~--------~Lk~~l~~~li~sQ~------ 395 (647)
T KOG2513|consen 330 YKKLAEFLTKLENHRLESAYQKHLIAKVFLFNFVNSYLSLFYIAFLLRDME--------LLKQQLATLLITSQS------ 395 (647)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--------HHHHHHHHHHHHHHH------
Confidence 654 55889999999999999999999999999975444322211111 111111111100000
Q ss_pred HHHhhhhhhHhhhchHHH--------HHHHHHHhhc---cCCHHHHH---------------H--------hcCCCCCCc
Q 048588 341 MVDGWAGVAGEILRLKPL--------IVYHLKIFFL---VKTVNDRE---------------E--------AMDPGAIGF 386 (615)
Q Consensus 341 i~~~~~~~~~~Llr~~~l--------i~~~~~~~~~---~kT~re~~---------------~--------~~~~~~f~~ 386 (615)
....++...+.-. ..+.-++.+. ..++.+.+ + -.+++--.|
T Consensus 396 -----l~~~~e~~~p~f~~~~~r~~~~~~f~t~~~ae~~~s~~~~i~~~~~~~~~~s~~~~a~~~~~~~qa~~E~~~~~y 470 (647)
T KOG2513|consen 396 -----LLNLMEIALPYFKIRTKRYENYIRFRTKSFAEELASAQAKIDGESPGFPAPSREPEAQLFPSLKQAELESGLAEY 470 (647)
T ss_pred -----HHHHHhhcchHHHHhhhhhhhhhhHHHHHHHHhhccchhhhcccccCCCCcccccchhhcccchhhhhcchhhhh
Confidence 0000111100000 0000000000 01111110 0 011222222
Q ss_pred c---chHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhheeccCC----CCCCCchHHHHHHHHHHHHHHH
Q 048588 387 N---TGEPQIQLYFLLGLVYAVVAPFLLPFIIVFFALAFVVYIHQVINVYNQEY----ESAAAFWPDVHGRIITALIVSQ 459 (615)
Q Consensus 387 g---~~y~~~ll~~~i~l~Ys~i~Plilpf~~~yF~l~y~v~Ky~llyvy~~~~----eSgG~~wp~~~~~i~~~l~l~q 459 (615)
. ..|=.+.+-|-...+||++.|+-..++++-=.+.+=++-+.+..+..++. ++=| .|..++..+-+--++..
T Consensus 471 dgtf~Dylel~lQFGyvVlFS~~~PLA~~~aLvnNv~eirsda~Kl~~~~krPfp~r~~~IG-~Wq~~l~~lSvls~vtn 549 (647)
T KOG2513|consen 471 DGTFDDYLELLLQFGYVVLFSCAFPLAAIFALVNNVIEIRSDALKLCLVLKRPFPRRVANIG-AWQNALELLSVLSCVTN 549 (647)
T ss_pred cchhHHHHHHHHHhhHHHHHHhHhhHHHHHHHHHHHhhhhHHHHHHHHhcCCCCcchhhhhH-HHHHHHHHHHHHHHHHh
Confidence 2 34556778888889999999999999999999999999999999998764 3444 48888776655545444
Q ss_pred HHHHHHHh
Q 048588 460 LLLMGLLS 467 (615)
Q Consensus 460 l~~~gl~~ 467 (615)
..++|...
T Consensus 550 caLi~~~~ 557 (647)
T KOG2513|consen 550 CALIGMYP 557 (647)
T ss_pred HHHHhccc
Confidence 45555444
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=95.38 E-value=0.15 Score=54.81 Aligned_cols=40 Identities=13% Similarity=0.175 Sum_probs=32.3
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCC
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNAN 79 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~ 79 (615)
++..||.|.|||.+.++ +.|+++|+... .|.++.++.|.+
T Consensus 105 ~~~~~LfVgnLp~~~te---~~L~~lF~~~G--~V~~v~i~~d~~ 144 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTD---RELYALFRTIG--PINTCRIMRDYK 144 (346)
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHhcC--CEEEEEEEecCC
Confidence 46679999999998775 78999998764 588888888754
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=93.31 E-value=0.88 Score=52.04 Aligned_cols=156 Identities=18% Similarity=0.231 Sum_probs=81.9
Q ss_pred eEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhH------HHHHHHHHHHHHHHHHHH-h-cc-----C
Q 048588 39 TVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSE------LVNKKKKMQNWLDFYELK-Y-SR-----N 105 (615)
Q Consensus 39 TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~------L~~~r~~~~~~Le~~~~k-~-~~-----~ 105 (615)
||.|.|||.+.+| +.|+++|+.. |.+.+|.+++|...=.. -....+.+.+.++....+ . ++ .
T Consensus 2 sl~VgnLp~~vte---~~L~~~F~~~--G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~ 76 (562)
T TIGR01628 2 SLYVGDLDPDVTE---AKLYDLFKPF--GPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMW 76 (562)
T ss_pred eEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeec
Confidence 7999999998775 7889999877 46889999988652111 023344444444432111 0 00 0
Q ss_pred CCCCCcccc-c----ccCCCCCcccH---HHHHHH--HHhhh---cc-----ceEEEEEecCHHHHHHHHHhhcCC--CC
Q 048588 106 PSQKPSMKT-G----FLGLWGETVDP---IDFYTS--KIETL---KK-----EATAFVSFKTRWGAAVCAQTQQTR--NP 165 (615)
Q Consensus 106 ~~~RP~~r~-g----~~g~~g~kVDa---I~~~~~--ki~~l---~~-----~I~AFVtF~s~~~A~~~~Q~~~~~--~p 165 (615)
....|..+. | +.+-..+.+|. .+++.+ ++... .+ +-+|||.|.+.++|..|.+.+... +.
T Consensus 77 s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~ 156 (562)
T TIGR01628 77 SQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLND 156 (562)
T ss_pred ccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecC
Confidence 001122111 1 11111233332 122221 11111 00 018999999999999998765432 11
Q ss_pred Ccceee-----------cCCCCCcceecccccChhhHHHHHHHHH
Q 048588 166 TLWLTD-----------WAPEPRDVYWDNLAIPFVSLTIRRLIIF 199 (615)
Q Consensus 166 ~~~~v~-----------~APeP~DIiW~NL~~~~~~r~~R~~~~~ 199 (615)
....+. ..+..+.|+-.||..+..+..++.++..
T Consensus 157 ~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~ 201 (562)
T TIGR01628 157 KEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAK 201 (562)
T ss_pred ceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHh
Confidence 112211 2233455888899888777777776543
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=92.78 E-value=0.96 Score=48.17 Aligned_cols=37 Identities=11% Similarity=0.243 Sum_probs=30.7
Q ss_pred cceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecC
Q 048588 37 QFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNA 78 (615)
Q Consensus 37 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~ 78 (615)
.-+|.|+|||.+.++ +.|+++|+.. |.+.++.+++|-
T Consensus 3 ~~~l~V~nLp~~~~e---~~l~~~F~~~--G~i~~v~i~~d~ 39 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQ---EEIRSLFTSI--GEIESCKLVRDK 39 (352)
T ss_pred CcEEEEeCCCCCCCH---HHHHHHHHcc--CCEEEEEEEEcC
Confidence 348999999998776 7899999886 468888888874
No 10
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=92.39 E-value=1.3 Score=50.78 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=31.2
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCC
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNAN 79 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~ 79 (615)
...+|.|.|||++.+| +.|.++|++. +.+.++.+.+|..
T Consensus 57 ~~~~lFVgnLp~~~tE---d~L~~~F~~~--G~I~~vrl~~D~s 95 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYE---DELVPLFEKA--GPIYELRLMMDFS 95 (578)
T ss_pred CCCEEEeCCCCCCCCH---HHHHHHHHhh--CCEEEEEEEECCC
Confidence 3479999999998776 7888888876 5688888888844
No 11
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=92.38 E-value=1.2 Score=41.75 Aligned_cols=76 Identities=12% Similarity=0.155 Sum_probs=52.1
Q ss_pred cceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccccc
Q 048588 37 QFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTGF 116 (615)
Q Consensus 37 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~g~ 116 (615)
..+|.|.|||.+.++ +.|+++|+.. +.+.++.++.|.. .+ +
T Consensus 34 ~~~lfVgnL~~~~te---~~L~~~F~~~--G~I~~v~i~~d~~-------------------------tg--~------- 74 (144)
T PLN03134 34 STKLFIGGLSWGTDD---ASLRDAFAHF--GDVVDAKVIVDRE-------------------------TG--R------- 74 (144)
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHhcC--CCeEEEEEEecCC-------------------------CC--C-------
Confidence 348999999998765 7889999875 4677777664430 00 0
Q ss_pred cCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 117 LGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 117 ~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
.+=.|||+|++.++|+.|.+.+... +...+.+++|
T Consensus 75 ----------------------~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 75 ----------------------SRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred ----------------------cceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 0117999999999999998765433 2334556555
No 12
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=90.18 E-value=1.4 Score=46.88 Aligned_cols=35 Identities=20% Similarity=0.411 Sum_probs=28.0
Q ss_pred ceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 38 FTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 38 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
++|.|.|||.++++ +.|+++|+.+ |.+.++.+++|
T Consensus 270 ~~lfV~NL~~~~~e---~~L~~~F~~f--G~v~~v~i~~d 304 (352)
T TIGR01661 270 YCIFVYNLSPDTDE---TVLWQLFGPF--GAVQNVKIIRD 304 (352)
T ss_pred cEEEEeCCCCCCCH---HHHHHHHHhC--CCeEEEEEeEc
Confidence 57999999998775 7899999876 45777877754
No 13
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=89.75 E-value=1.4 Score=50.34 Aligned_cols=73 Identities=21% Similarity=0.198 Sum_probs=53.0
Q ss_pred cceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccccc
Q 048588 37 QFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTGF 116 (615)
Q Consensus 37 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~g~ 116 (615)
..+|.|+|+|.+.++ +.|+++|+.+.|+++.++.+.
T Consensus 233 ~k~LfVgNL~~~~te---e~L~~~F~~f~~G~I~rV~~~----------------------------------------- 268 (578)
T TIGR01648 233 VKILYVRNLMTTTTE---EIIEKSFSEFKPGKVERVKKI----------------------------------------- 268 (578)
T ss_pred ccEEEEeCCCCCCCH---HHHHHHHHhcCCCceEEEEee-----------------------------------------
Confidence 368999999997765 788999987767776543210
Q ss_pred cCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCCC
Q 048588 117 LGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPEP 176 (615)
Q Consensus 117 ~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APeP 176 (615)
. | .|||.|++.++|..|.+.+... ....+.|++|..+
T Consensus 269 ---r----g----------------fAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~ 307 (578)
T TIGR01648 269 ---R----D----------------YAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPV 307 (578)
T ss_pred ---c----C----------------eEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 0 0 6999999999999998876544 3356778888544
No 14
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=89.70 E-value=0.6 Score=50.35 Aligned_cols=37 Identities=11% Similarity=0.279 Sum_probs=27.6
Q ss_pred ceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCC
Q 048588 38 FTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNAN 79 (615)
Q Consensus 38 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~ 79 (615)
--+.|-.||+...| +.++++|+++ +.|.++.+.+|-.
T Consensus 35 vKlfVgqIprt~sE---~dlr~lFe~y--g~V~einl~kDk~ 71 (510)
T KOG0144|consen 35 VKLFVGQIPRTASE---KDLRELFEKY--GNVYEINLIKDKS 71 (510)
T ss_pred hhheeccCCccccH---HHHHHHHHHh--CceeEEEeecccc
Confidence 35668999997554 6788888776 5688888888753
No 15
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=89.48 E-value=1.5 Score=44.18 Aligned_cols=77 Identities=26% Similarity=0.304 Sum_probs=51.1
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccc
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTG 115 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~g 115 (615)
+.-||.|+|+|.+++| +.|++.|..+. .+.++.+++|- + +|
T Consensus 188 D~~tvRvtNLsed~~E---~dL~eLf~~fg--~i~rvylardK--------------------------~--------TG 228 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMRE---DDLEELFRPFG--PITRVYLARDK--------------------------E--------TG 228 (270)
T ss_pred ccceeEEecCccccCh---hHHHHHhhccC--ccceeEEEEcc--------------------------c--------cC
Confidence 5569999999998765 55677775553 46677777542 0 11
Q ss_pred ccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCCCCC--cceeecC
Q 048588 116 FLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTRNPT--LWLTDWA 173 (615)
Q Consensus 116 ~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~~p~--~~~v~~A 173 (615)
.+ .| -|||||.++.+|+.|..-+....-. .+.|++|
T Consensus 229 ~~--kG--------------------FAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 229 LS--KG--------------------FAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred cc--cc--------------------eEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 11 01 5999999999999888877554332 3456665
No 16
>PF07810 TMC: TMC domain; InterPro: IPR012496 These sequences are similar to a region conserved amongst various protein products of the transmembrane channel-like (TMC) gene family, such as Transmembrane channel-like protein 3 (Q7TN63 from SWISSPROT) and EVIN2 (Q8IU68 from SWISSPROT) - this region is termed the TMC domain []. Mutations in these genes are implicated in a number of human conditions, such as deafness and epidermodysplasia verruciformis []. TMC proteins are thought to have important cellular roles, and may be modifiers of ion channels or transporters []. ; GO: 0016021 integral to membrane
Probab=88.50 E-value=1.3 Score=39.62 Aligned_cols=56 Identities=9% Similarity=0.109 Sum_probs=43.1
Q ss_pred cCCCCCCccchH---HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhheeccCC
Q 048588 379 MDPGAIGFNTGE---PQIQLYFLLGLVYAVVAPFLLPFIIVFFALAFVVYIHQVINVYNQEY 437 (615)
Q Consensus 379 ~~~~~f~~g~~y---~~~ll~~~i~l~Ys~i~Plilpf~~~yF~l~y~v~Ky~llyvy~~~~ 437 (615)
...++|+.+... -+...+..+|+.|||+.|+ ++++-+++.+++.|+.+++.+.|+.
T Consensus 47 ~g~~eF~i~~nvL~liY~Qtl~WiG~ffsPlLP~---i~~ik~~i~FYvKk~sll~~c~p~~ 105 (111)
T PF07810_consen 47 PGKPEFDIPKNVLDLIYNQTLVWIGMFFSPLLPA---INVIKLFILFYVKKFSLLYNCQPPQ 105 (111)
T ss_pred CCCCCccHhhhHHHHHHcchhhhhhHHhchhHHH---HHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 456777776644 3344567889999888887 5777888889999999999998863
No 17
>KOG2514 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.45 E-value=5.1 Score=46.95 Aligned_cols=53 Identities=11% Similarity=0.261 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHhhhhhhHHHHHHHHH
Q 048588 245 IQGFLPGIALKIFLIFLPDILMLMSKSEGFISRAALGRRSATRYYIFQFINVF 297 (615)
Q Consensus 245 i~g~LPslil~i~~~llP~il~~ls~~eg~~S~S~~e~s~~~k~f~F~~~Nvf 297 (615)
.+..+-.+++.++|.+---+-.+|+..|.+.|.|+.|.|..-|.|+||++|..
T Consensus 435 ~a~~in~~~i~~L~~iy~~~a~~lt~~e~prTe~~~ensl~~KiflfqfvN~y 487 (861)
T KOG2514|consen 435 TAVIINLVVIMILNAIYSNLASRLTNLENPRTESEFENSLILKIFLFQFVNYY 487 (861)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhcCccchhhhcchhHHHHHHHHHHHhc
Confidence 33444445566666677777788999999999999999999999999999954
No 18
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=82.80 E-value=6.1 Score=45.20 Aligned_cols=36 Identities=17% Similarity=0.320 Sum_probs=27.6
Q ss_pred ceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecC
Q 048588 38 FTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNA 78 (615)
Q Consensus 38 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~ 78 (615)
.+|.|+|+|.+.++ +.|+++|+.+ |.+.++.+..|.
T Consensus 179 ~~l~V~nl~~~~te---e~L~~~F~~f--G~i~~~~i~~~~ 214 (562)
T TIGR01628 179 TNLYVKNLDPSVNE---DKLRELFAKF--GEITSAAVMKDG 214 (562)
T ss_pred CeEEEeCCCCcCCH---HHHHHHHHhc--CCEEEEEEEECC
Confidence 47999999998765 7888888776 457777776654
No 19
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=82.68 E-value=7.9 Score=40.71 Aligned_cols=87 Identities=17% Similarity=0.139 Sum_probs=56.5
Q ss_pred cceEEEecCCCCC-CccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccc
Q 048588 37 QFTVLVRNVPPDP-DESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTG 115 (615)
Q Consensus 37 ~~TVlV~~IP~~~-~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~g 115 (615)
..-+-|+|||=+- |.+++.+.++ + |.|++|.|++|- |.
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~k----f--G~VldVEIIfNE-------------------------RG---------- 134 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEK----F--GKVLDVEIIFNE-------------------------RG---------- 134 (376)
T ss_pred CceeEeecCCccccCccHHHHHHh----h--CceeeEEEEecc-------------------------CC----------
Confidence 3579999999853 4445555444 3 679999999874 11
Q ss_pred ccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCCC--CCcceee----------cCCCCCcceecc
Q 048588 116 FLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTRN--PTLWLTD----------WAPEPRDVYWDN 183 (615)
Q Consensus 116 ~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~~--p~~~~v~----------~APeP~DIiW~N 183 (615)
..| -|||||++..+|-.|.+.++... ..+..|. .-|-|.-.-|.+
T Consensus 135 SKG-----------------------FGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATarV~n~K~~v~p~~~g~~~ 191 (376)
T KOG0125|consen 135 SKG-----------------------FGFVTMENPADADRARAELHGTVVEGRKIEVNNATARVHNKKKKVLPYPNGWKL 191 (376)
T ss_pred CCc-----------------------cceEEecChhhHHHHHHHhhcceeeceEEEEeccchhhccCCcccCCCcccccc
Confidence 112 48999999999999999887532 1122222 235566667877
Q ss_pred cccC
Q 048588 184 LAIP 187 (615)
Q Consensus 184 L~~~ 187 (615)
+...
T Consensus 192 ~~a~ 195 (376)
T KOG0125|consen 192 LPAV 195 (376)
T ss_pred ccch
Confidence 7653
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=79.95 E-value=15 Score=40.63 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=30.6
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecC
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNA 78 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~ 78 (615)
+.+||.|.|||.+.++ +.|+++|+.. |.+.++.+..|.
T Consensus 88 ~~~~l~V~nlp~~~~~---~~l~~~F~~~--G~v~~v~i~~d~ 125 (457)
T TIGR01622 88 DDRTVFVLQLALKARE---RDLYEFFSKV--GKVRDVQCIKDR 125 (457)
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEeecC
Confidence 3579999999998765 7789999876 478888888764
No 21
>PLN03121 nucleic acid binding protein; Provisional
Probab=77.92 E-value=2.9 Score=42.29 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=30.1
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
+-|||.|+||+++..+ +.|++||+.. |++.++.+.+|
T Consensus 4 ~g~TV~V~NLS~~tTE---~dLrefFS~~--G~I~~V~I~~D 40 (243)
T PLN03121 4 GGYTAEVTNLSPKATE---KDVYDFFSHC--GAIEHVEIIRS 40 (243)
T ss_pred CceEEEEecCCCCCCH---HHHHHHHHhc--CCeEEEEEecC
Confidence 4589999999998776 8999999865 67888887743
No 22
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=76.51 E-value=14 Score=40.34 Aligned_cols=123 Identities=17% Similarity=0.226 Sum_probs=69.6
Q ss_pred ceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec-CCchh--------HHHHHHHHHHHHHHHHHHHhccCCCC
Q 048588 38 FTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN-ANKPS--------ELVNKKKKMQNWLDFYELKYSRNPSQ 108 (615)
Q Consensus 38 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d-~~~L~--------~L~~~r~~~~~~Le~~~~k~~~~~~~ 108 (615)
--|.|-.||.|.-| +.|.-+|++. |++-++.+-.| .+--. .--++.+++.+.|..++ -
T Consensus 84 ~EVfvGkIPrD~~E---deLvplfEki--G~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~E--------i 150 (506)
T KOG0117|consen 84 CEVFVGKIPRDVFE---DELVPLFEKI--GKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYE--------I 150 (506)
T ss_pred ceEEecCCCccccc---hhhHHHHHhc--cceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcc--------c
Confidence 47999999998644 5677777765 34445554444 11000 00122334444444332 2
Q ss_pred CCccccccc------CC-CC--CcccHHHHHHHHHhhhccce-----------------EEEEEecCHHHHHHHHHhhcC
Q 048588 109 KPSMKTGFL------GL-WG--ETVDPIDFYTSKIETLKKEA-----------------TAFVSFKTRWGAAVCAQTQQT 162 (615)
Q Consensus 109 RP~~r~g~~------g~-~g--~kVDaI~~~~~ki~~l~~~I-----------------~AFVtF~s~~~A~~~~Q~~~~ 162 (615)
||....|+| .+ .| .|-..-|-..+++++..+-+ -|||.|.|-++|+++.|.+.+
T Consensus 151 r~GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~ 230 (506)
T KOG0117|consen 151 RPGKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMP 230 (506)
T ss_pred cCCCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccC
Confidence 454444433 11 12 22223344456666554332 899999999999999999877
Q ss_pred CCCC----cceeecC
Q 048588 163 RNPT----LWLTDWA 173 (615)
Q Consensus 163 ~~p~----~~~v~~A 173 (615)
.+-. ...|+||
T Consensus 231 g~~klwgn~~tVdWA 245 (506)
T KOG0117|consen 231 GKIKLWGNAITVDWA 245 (506)
T ss_pred CceeecCCcceeecc
Confidence 6543 3467777
No 23
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=76.42 E-value=4.9 Score=41.54 Aligned_cols=112 Identities=21% Similarity=0.219 Sum_probs=62.9
Q ss_pred EEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCch--hHHHHHHHHHHHHHHHHHH-------HhccCCCCCC
Q 048588 40 VLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKP--SELVNKKKKMQNWLDFYEL-------KYSRNPSQKP 110 (615)
Q Consensus 40 VlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L--~~L~~~r~~~~~~Le~~~~-------k~~~~~~~RP 110 (615)
+.|-|+|...++ .+++..|+.+ ++|+++-|+.|.+=+ +.--. -+.+.+.|.+|.. +..++ +.++
T Consensus 5 LFIGNLp~~~~~---~elr~lFe~y--gkVlECDIvKNYgFVHiEdkta-aedairNLhgYtLhg~nInVeaSks-Ksk~ 77 (346)
T KOG0109|consen 5 LFIGNLPREATE---QELRSLFEQY--GKVLECDIVKNYGFVHIEDKTA-AEDAIRNLHGYTLHGVNINVEASKS-KSKA 77 (346)
T ss_pred hhccCCCcccch---HHHHHHHHhh--CceEeeeeecccceEEeecccc-cHHHHhhcccceecceEEEEEeccc-cCCC
Confidence 568899987665 6788888877 689999999888733 22222 2333444555531 11122 2334
Q ss_pred cccccccCCCCCcccHHHHHHHHHhhh----ccce---EEEEEecCHHHHHHHHHhh
Q 048588 111 SMKTGFLGLWGETVDPIDFYTSKIETL----KKEA---TAFVSFKTRWGAAVCAQTQ 160 (615)
Q Consensus 111 ~~r~g~~g~~g~kVDaI~~~~~ki~~l----~~~I---~AFVtF~s~~~A~~~~Q~~ 160 (615)
+.|++.-.++ .+-.+-| ++++.++- |-+| +|||-|+...+|..+..-+
T Consensus 78 stkl~vgNis-~tctn~E-lRa~fe~ygpviecdivkdy~fvh~d~~eda~~air~l 132 (346)
T KOG0109|consen 78 STKLHVGNIS-PTCTNQE-LRAKFEKYGPVIECDIVKDYAFVHFDRAEDAVEAIRGL 132 (346)
T ss_pred ccccccCCCC-ccccCHH-HhhhhcccCCceeeeeecceeEEEEeeccchHHHHhcc
Confidence 4444321111 1111111 33343332 2334 9999999999999888543
No 24
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=74.80 E-value=5.3 Score=31.59 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=23.2
Q ss_pred EEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEE
Q 048588 40 VLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVV 75 (615)
Q Consensus 40 VlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~ 75 (615)
|.|+|||++.++ +.|.++|+.. +.+.++.+.
T Consensus 1 v~i~nlp~~~~~---~~l~~~f~~~--g~v~~v~~~ 31 (70)
T PF14259_consen 1 VYISNLPPSTTE---EDLRNFFSRF--GPVEKVRLI 31 (70)
T ss_dssp EEEESSTTT--H---HHHHHHCTTS--SBEEEEEEE
T ss_pred CEEeCCCCCCCH---HHHHHHHHhc--CCcceEEEE
Confidence 689999998765 7899999876 457777766
No 25
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=74.26 E-value=20 Score=41.54 Aligned_cols=38 Identities=11% Similarity=0.001 Sum_probs=30.4
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecC
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNA 78 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~ 78 (615)
...+|.|.|||.+.++ +.|+++|+.+ |.+.++.+.+|-
T Consensus 106 ~~~rLfVGnLp~~~tE---e~Lr~lF~~f--G~I~sV~I~~D~ 143 (612)
T TIGR01645 106 IMCRVYVGSISFELRE---DTIRRAFDPF--GPIKSINMSWDP 143 (612)
T ss_pred CCCEEEEcCCCCCCCH---HHHHHHHHcc--CCEEEEEEeecC
Confidence 3468999999998765 7889999876 468888888774
No 26
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=73.69 E-value=11 Score=42.49 Aligned_cols=36 Identities=19% Similarity=0.108 Sum_probs=28.1
Q ss_pred cceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 37 QFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 37 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
+++|.|+|||.+.++ +.|+++|+.. |.+.++.++.+
T Consensus 2 s~vv~V~nLp~~~te---~~L~~~f~~f--G~V~~v~i~~~ 37 (481)
T TIGR01649 2 SPVVHVRNLPQDVVE---ADLVEALIPF--GPVSYVMMLPG 37 (481)
T ss_pred ccEEEEcCCCCCCCH---HHHHHHHHhc--CCeeEEEEECC
Confidence 469999999998765 7788888876 46777777654
No 27
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=73.06 E-value=5.6 Score=40.72 Aligned_cols=133 Identities=20% Similarity=0.245 Sum_probs=73.1
Q ss_pred cceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccccc
Q 048588 37 QFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTGF 116 (615)
Q Consensus 37 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~g~ 116 (615)
-+|+.|-|+.++..| +.|...|+... .+.+.-+++| ++....+-.. ...++|+.+.++
T Consensus 6 prtlyvgnld~~vte---~~i~~lf~qig--~v~~~k~i~~----------------e~~v~wa~~p-~nQsk~t~~~hf 63 (321)
T KOG0148|consen 6 PRTLYVGNLDSTVTE---DFIATLFNQIG--SVTKTKVIFD----------------ELKVNWATAP-GNQSKPTSNQHF 63 (321)
T ss_pred CceEEeeccChhhHH---HHHHHHHHhcc--ccccceeehh----------------hhccccccCc-ccCCCCccccce
Confidence 369999999886554 67888898775 4666667766 2222111111 123456555432
Q ss_pred ---cCCCCCcccHHHHHHHHHhhhc--------cce-----------EEEEEecCHHHHHHHHHhhcC------------
Q 048588 117 ---LGLWGETVDPIDFYTSKIETLK--------KEA-----------TAFVSFKTRWGAAVCAQTQQT------------ 162 (615)
Q Consensus 117 ---~g~~g~kVDaI~~~~~ki~~l~--------~~I-----------~AFVtF~s~~~A~~~~Q~~~~------------ 162 (615)
.|.....+| + ++|++.- .+| +|||+|-+.++|..|.|..-.
T Consensus 64 hvfvgdls~eI~---~--e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNW 138 (321)
T KOG0148|consen 64 HVFVGDLSPEID---N--EKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNW 138 (321)
T ss_pred eEEehhcchhcc---h--HHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccc
Confidence 233333333 2 2333321 122 999999999999988775321
Q ss_pred --CCCCcc----------eeecCCCCCcceecccccChhhHHHHHH
Q 048588 163 --RNPTLW----------LTDWAPEPRDVYWDNLAIPFVSLTIRRL 196 (615)
Q Consensus 163 --~~p~~~----------~v~~APeP~DIiW~NL~~~~~~r~~R~~ 196 (615)
++|..+ -=+-+|.-.-|+-.|+.-...+..+|+.
T Consensus 139 ATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~ 184 (321)
T KOG0148|consen 139 ATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQT 184 (321)
T ss_pred cccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHh
Confidence 122111 0123455555666666665555566654
No 28
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=73.00 E-value=5.6 Score=34.71 Aligned_cols=23 Identities=35% Similarity=0.712 Sum_probs=16.2
Q ss_pred eEEEecCCCCC-CccHHHHHHHHh
Q 048588 39 TVLVRNVPPDP-DESVTQLVEHFF 61 (615)
Q Consensus 39 TVlV~~IP~~~-~~~~~~~l~~~F 61 (615)
|||+||||..- .+.+.+.+++.|
T Consensus 3 TvMirNIPn~~t~~~L~~~l~~~~ 26 (97)
T PF04059_consen 3 TVMIRNIPNKYTQEMLIQILDEHF 26 (97)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhc
Confidence 99999999964 444555555543
No 29
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=71.70 E-value=5.9 Score=30.84 Aligned_cols=32 Identities=28% Similarity=0.450 Sum_probs=24.2
Q ss_pred EEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEe
Q 048588 40 VLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVS 76 (615)
Q Consensus 40 VlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~ 76 (615)
|.|.|||++.++ +.|+++|+.. |.+..+.+..
T Consensus 1 l~v~nlp~~~t~---~~l~~~f~~~--g~i~~~~~~~ 32 (70)
T PF00076_consen 1 LYVGNLPPDVTE---EELRDFFSQF--GKIESIKVMR 32 (70)
T ss_dssp EEEESETTTSSH---HHHHHHHHTT--STEEEEEEEE
T ss_pred cEEcCCCCcCCH---HHHHHHHHHh--hhcccccccc
Confidence 679999998775 7899999885 3456666554
No 30
>PF02654 CobS: Cobalamin-5-phosphate synthase; InterPro: IPR003805 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CobS protein, a cobalamin-5-phosphate synthase that catyalzes the reactions: Adenosylcobinamide-GDP + alpha-ribazole-5'-P = adenosylcobalamin-5'-phosphate + GMP Adenosylcobinamide-GDP + alpha-ribazole = adenosylcobalamin + GMP The protein product from these catalyses is associated with a large complex of proteins and is induced by cobinamide. CobS is involved in part III of cobalamin biosynthesis, one of the late steps in adenosylcobalamin synthesis that, together with CobU, CobT, and CobC proteins, defines the nucleotide loop assembly pathway [, ].; GO: 0008818 cobalamin 5'-phosphate synthase activity, 0009236 cobalamin biosynthetic process
Probab=69.19 E-value=69 Score=32.40 Aligned_cols=124 Identities=19% Similarity=0.207 Sum_probs=62.0
Q ss_pred cCCHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh---heeccCCCCCCCchH
Q 048588 369 VKTVNDREEAMDPGAIGFNTGEPQIQLYFLLGLVYAVVAPFLLPFIIVFFALAFVVYIHQVI---NVYNQEYESAAAFWP 445 (615)
Q Consensus 369 ~kT~re~~~~~~~~~f~~g~~y~~~ll~~~i~l~Ys~i~Plilpf~~~yF~l~y~v~Ky~ll---yvy~~~~eSgG~~wp 445 (615)
.++++++.|.++.+..-- |+...+++.+.+-|+.++-+...-......+....-|...+ ....|+.+.-|+.+.
T Consensus 85 ~~~~er~LeIMKDsriG~---~Gv~al~~~lllk~~~l~~l~~~~~~~~l~i~~~~~r~~~~~~~~~~~p~~~Glg~~f~ 161 (235)
T PF02654_consen 85 GRDRERRLEIMKDSRIGA---FGVLALVLVLLLKYAALSSLPSHGLALALLIAPVLARLSMLLLAAFSKPRPEGLGALFV 161 (235)
T ss_pred CCCHHHHHHHHhCCCCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhHHh
Confidence 355556678887665432 45555555555555555544432223333444455566444 333444444455553
Q ss_pred HHH--HHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHhhccc
Q 048588 446 DVH--GRIITALIVSQLLLMGLLSTKEAAQSTPLLITLPILTIWFHRFCKGRYE 497 (615)
Q Consensus 446 ~~~--~~i~~~l~l~ql~~~gl~~lk~~~~~~~~~i~L~i~ti~f~~~~~~~f~ 497 (615)
.-. +++..++++.=+.. ++.....+.....++.-.+.++.+.+++++++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~lG 213 (235)
T PF02654_consen 162 GSAKKRQVLIALIILLLLA--LFLGGIPWIGLLALLVALLLALLLARYARRRLG 213 (235)
T ss_pred ccCChhHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 322 34444554432222 222211122233344455677788899998876
No 31
>PLN03120 nucleic acid binding protein; Provisional
Probab=69.01 E-value=6.7 Score=40.28 Aligned_cols=35 Identities=26% Similarity=0.232 Sum_probs=28.8
Q ss_pred cceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEe
Q 048588 37 QFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVS 76 (615)
Q Consensus 37 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~ 76 (615)
.+||.|.|||.+.++ +.|++||+.. |++.++.+..
T Consensus 4 ~rtVfVgNLs~~tTE---~dLrefFS~~--G~I~~V~I~~ 38 (260)
T PLN03120 4 VRTVKVSNVSLKATE---RDIKEFFSFS--GDIEYVEMQS 38 (260)
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEee
Confidence 479999999998776 7899999766 5788887763
No 32
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=68.81 E-value=25 Score=39.04 Aligned_cols=37 Identities=19% Similarity=0.255 Sum_probs=26.5
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
.+.|-|.+|++|-.+.+ +.|.+||+.. .+.++.+.++
T Consensus 8 ~~~~~vr~rGLPwsat~---~ei~~Ff~~~---~I~~~~~~r~ 44 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATE---KEILDFFSNC---GIENLEIPRR 44 (510)
T ss_pred CcceEEEecCCCccccH---HHHHHHHhcC---ceeEEEEecc
Confidence 35688999999998765 7899999755 3444444444
No 33
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=68.20 E-value=15 Score=32.02 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=18.2
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHH
Q 048588 435 QEYESAAAFWPDVHGRIITALIVS 458 (615)
Q Consensus 435 ~~~eSgG~~wp~~~~~i~~~l~l~ 458 (615)
+....||+-||.++.-++.+++++
T Consensus 8 ~~~~~~g~sW~~LVGVv~~al~~S 31 (102)
T PF15176_consen 8 PGPGEGGRSWPFLVGVVVTALVTS 31 (102)
T ss_pred CCCCCCCcccHhHHHHHHHHHHHH
Confidence 456778999998887777766665
No 34
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=66.44 E-value=52 Score=36.96 Aligned_cols=37 Identities=11% Similarity=0.108 Sum_probs=27.6
Q ss_pred CcceEEEecCCC-CCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 36 DQFTVLVRNVPP-DPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 36 ~~~TVlV~~IP~-~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
...+|.|.|+|. ..++ +.|++.|+.+ |.+.++.+..|
T Consensus 274 ~~~~l~v~nL~~~~vt~---~~L~~lF~~y--G~V~~vki~~~ 311 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNC---DRLFNLFCVY--GNVERVKFMKN 311 (481)
T ss_pred CCCEEEEeCCCCCCCCH---HHHHHHHHhc--CCeEEEEEEeC
Confidence 446999999997 4554 7888889876 46777776654
No 35
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=65.53 E-value=30 Score=35.36 Aligned_cols=120 Identities=18% Similarity=0.227 Sum_probs=66.5
Q ss_pred eEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHH-------H--HHHHHHHHHHHH--HHHHhccCCC
Q 048588 39 TVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSEL-------V--NKKKKMQNWLDF--YELKYSRNPS 107 (615)
Q Consensus 39 TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L-------~--~~r~~~~~~Le~--~~~k~~~~~~ 107 (615)
-+.|.=+|....+ |+++..|... |+++++-+++|--.=+.| + ++.+++.+.|.- ++.|--+-.-
T Consensus 43 NLIvNYLPQ~MTq---dE~rSLF~Si--GeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 43 NLIVNYLPQNMTQ---DELRSLFGSI--GEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred eeeeeecccccCH---HHHHHHhhcc--cceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 3556778886654 7899999765 678888888875322221 1 334555555542 2222211122
Q ss_pred CCCc---ccccccCCCC-CcccHHHHHHHHHhhh-------------ccce------EEEEEecCHHHHHHHHHhhcCCC
Q 048588 108 QKPS---MKTGFLGLWG-ETVDPIDFYTSKIETL-------------KKEA------TAFVSFKTRWGAAVCAQTQQTRN 164 (615)
Q Consensus 108 ~RP~---~r~g~~g~~g-~kVDaI~~~~~ki~~l-------------~~~I------~AFVtF~s~~~A~~~~Q~~~~~~ 164 (615)
.||. +|-.-+=..| .|-- -++|++.+ .+++ +|||-|+.+..|..|...+...+
T Consensus 118 ARPSs~~Ik~aNLYvSGlPktM----tqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~ 193 (360)
T KOG0145|consen 118 ARPSSDSIKDANLYVSGLPKTM----TQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK 193 (360)
T ss_pred ccCChhhhcccceEEecCCccc----hHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC
Confidence 3554 2211110112 1111 12233322 2222 99999999999999999998888
Q ss_pred CCc
Q 048588 165 PTL 167 (615)
Q Consensus 165 p~~ 167 (615)
|..
T Consensus 194 P~g 196 (360)
T KOG0145|consen 194 PSG 196 (360)
T ss_pred CCC
Confidence 864
No 36
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=65.35 E-value=8.1 Score=29.32 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=19.3
Q ss_pred EEEEEecCHHHHHHHHHhhcCC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR 163 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~ 163 (615)
.|||+|.+..+|..|.+.+...
T Consensus 23 ~a~V~f~~~~~A~~a~~~l~~~ 44 (56)
T PF13893_consen 23 FAFVEFASVEDAQKAIEQLNGR 44 (56)
T ss_dssp EEEEEESSHHHHHHHHHHHTTS
T ss_pred EEEEEECCHHHHHHHHHHhCCC
Confidence 7999999999999999877543
No 37
>smart00362 RRM_2 RNA recognition motif.
Probab=65.02 E-value=10 Score=28.89 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=21.9
Q ss_pred eEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEE
Q 048588 39 TVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVV 75 (615)
Q Consensus 39 TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~ 75 (615)
||.|+|+|+..++ +.|+++|+... .+..+.+.
T Consensus 1 ~v~i~~l~~~~~~---~~l~~~~~~~g--~v~~~~~~ 32 (72)
T smart00362 1 TLFVGNLPPDVTE---EDLKELFSKFG--PIESVKIP 32 (72)
T ss_pred CEEEcCCCCcCCH---HHHHHHHHhcC--CEEEEEEe
Confidence 6899999997654 67888887653 34444433
No 38
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=62.94 E-value=12 Score=28.56 Aligned_cols=32 Identities=28% Similarity=0.446 Sum_probs=23.0
Q ss_pred eEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEE
Q 048588 39 TVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVV 75 (615)
Q Consensus 39 TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~ 75 (615)
+|.|+|+|+..++ +.++++|+.. +.+.++.+.
T Consensus 1 ~i~i~~l~~~~~~---~~i~~~~~~~--g~i~~~~~~ 32 (74)
T cd00590 1 TLFVGNLPPDVTE---EDLRELFSKF--GKVESVRIV 32 (74)
T ss_pred CEEEeCCCCccCH---HHHHHHHHhc--CCEEEEEEe
Confidence 5889999997654 6788888765 455555544
No 39
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=58.78 E-value=10 Score=38.11 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=16.4
Q ss_pred EEEEEecCHHHHHHHHHh
Q 048588 142 TAFVSFKTRWGAAVCAQT 159 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~ 159 (615)
+|||||++.++|..|++-
T Consensus 56 yGfVTf~d~~aa~rAc~d 73 (247)
T KOG0149|consen 56 YGFVTFRDAEAATRACKD 73 (247)
T ss_pred eeeEEeecHHHHHHHhcC
Confidence 999999999999988874
No 40
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=58.10 E-value=25 Score=37.83 Aligned_cols=56 Identities=16% Similarity=0.239 Sum_probs=37.2
Q ss_pred EEEEEecCHHHHHHHHHhhcCC--CCCcceeecC-C-----CCCcceecccccChhhHHHHHHH
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA-P-----EPRDVYWDNLAIPFVSLTIRRLI 197 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A-P-----eP~DIiW~NL~~~~~~r~~R~~~ 197 (615)
+|||+|.+.++|..|...+... ....+.++.| | ....|+-.||.....+..+|.++
T Consensus 151 yaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F 214 (346)
T TIGR01659 151 YAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIF 214 (346)
T ss_pred EEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccccccccceeEEeCCCCcccHHHHHHHH
Confidence 7999999999999998766543 2334555544 2 23347777777766666666543
No 41
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=56.78 E-value=60 Score=36.37 Aligned_cols=35 Identities=9% Similarity=0.151 Sum_probs=25.5
Q ss_pred cceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEe
Q 048588 37 QFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVS 76 (615)
Q Consensus 37 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~ 76 (615)
..+|.|.|||...++ +.|+++|+.+. .+..+.++.
T Consensus 295 ~~~l~v~nlp~~~~~---~~l~~~f~~~G--~i~~~~~~~ 329 (509)
T TIGR01642 295 KDRIYIGNLPLYLGE---DQIKELLESFG--DLKAFNLIK 329 (509)
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhcC--CeeEEEEEe
Confidence 368999999997665 67888887763 466666553
No 42
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=56.41 E-value=2.4 Score=36.33 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=22.9
Q ss_pred CCCcceEEEecCCCC-CCccHHHHHHHHhcc
Q 048588 34 QPDQFTVLVRNVPPD-PDESVTQLVEHFFLV 63 (615)
Q Consensus 34 ~~~~~TVlV~~IP~~-~~~~~~~~l~~~F~~ 63 (615)
..+.+||+|+|||.. .+|.+.+.|+=||++
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~LeIhFqK 79 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLEIHFQK 79 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEEEEEec
Confidence 467889999999994 455677777777764
No 43
>PRK12438 hypothetical protein; Provisional
Probab=55.69 E-value=4.8e+02 Score=32.19 Aligned_cols=33 Identities=15% Similarity=0.183 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhhheeccCCCCCCCchHHHHHHH
Q 048588 419 ALAFVVYIHQVINVYNQEYESAAAFWPDVHGRI 451 (615)
Q Consensus 419 ~l~y~v~Ky~llyvy~~~~eSgG~~wp~~~~~i 451 (615)
++.||.+||.++|--.-..--.|.-|-.++-.+
T Consensus 225 A~~ywLdRy~LL~s~~g~~~~~GAgYTDv~a~L 257 (991)
T PRK12438 225 AVAYWLDRYELLSSGRKEPTFTGAGYTDINAVL 257 (991)
T ss_pred HHHHHHhhhhheecCCCCceEecCChhhhhhHH
Confidence 578999999999876432112355566665443
No 44
>COG0368 CobS Cobalamin-5-phosphate synthase [Coenzyme metabolism]
Probab=53.07 E-value=2.6e+02 Score=28.62 Aligned_cols=127 Identities=16% Similarity=0.112 Sum_probs=58.3
Q ss_pred cCCHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh--hhhe-eccCCCCCCCchH
Q 048588 369 VKTVNDREEAMDPGAIGFNTGEPQIQLYFLLGLVYAVVAPFLLPFIIVFFALAFVVYIHQ--VINV-YNQEYESAAAFWP 445 (615)
Q Consensus 369 ~kT~re~~~~~~~~~f~~g~~y~~~ll~~~i~l~Ys~i~Plilpf~~~yF~l~y~v~Ky~--llyv-y~~~~eSgG~~wp 445 (615)
.++++++.|.++.+..-= ++....++.+.+-++.++=+..-.......+.-+--|.. .+.. ..+++...|.+..
T Consensus 89 ~~~~er~leiMkDsrvG~---~Gv~ali~vlll~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 165 (246)
T COG0368 89 GGSRERKLEIMKDSRVGA---GGVAALILVLLLKVLALASLLDLGAAALLALAEVLAKSRMLLVALLSKPPYAGLGGLGK 165 (246)
T ss_pred CCCHHHHHHHHhCCCcCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhH
Confidence 345656677887665433 344445555555555544443312222222222333333 3333 3456665565665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHhhcccc
Q 048588 446 DVHGRIITALIVSQLLLMGLLSTKEAAQSTPLLITLPILTIWFHRFCKGRYEP 498 (615)
Q Consensus 446 ~~~~~i~~~l~l~ql~~~gl~~lk~~~~~~~~~i~L~i~ti~f~~~~~~~f~~ 498 (615)
...+..-...........++..+--.......++...++..++.++|.+++.=
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~r~~GG 218 (246)
T COG0368 166 EFADPRKGLIGALLLLVLLLLALLFGLSGAIAVAVALLAAALLGRLAKRRFGG 218 (246)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 55432222222222222111111111112234444566777899999988863
No 45
>PRK00068 hypothetical protein; Validated
Probab=51.65 E-value=5.5e+02 Score=31.66 Aligned_cols=33 Identities=9% Similarity=0.114 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhhheeccCCCCCCCchHHHHHHH
Q 048588 417 FFALAFVVYIHQVINVYNQEYESAAAFWPDVHGRI 451 (615)
Q Consensus 417 yF~l~y~v~Ky~llyvy~~~~eSgG~~wp~~~~~i 451 (615)
.-++.||.+||+++|.-.-. -.|.-|-.++-.+
T Consensus 225 l~a~~ywL~ry~Ll~s~~g~--v~GA~YTDv~a~L 257 (970)
T PRK00068 225 LKAVGYWLDRYNLLYSTRGV--FTGASYTDINAVL 257 (970)
T ss_pred HHHHHHHHhhhhheecCCCE--EecCChHhhhhHH
Confidence 34678999999999876432 3355566666443
No 46
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=50.82 E-value=13 Score=36.79 Aligned_cols=48 Identities=21% Similarity=0.360 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHH-HHHhhccccccchhHHHHHHHHH-HHHHHHhhccc
Q 048588 450 RIITALIVSQLLLM-GLLSTKEAAQSTPLLITLPILTI-WFHRFCKGRYE 497 (615)
Q Consensus 450 ~i~~~l~l~ql~~~-gl~~lk~~~~~~~~~i~L~i~ti-~f~~~~~~~f~ 497 (615)
+.+.-++.+.++.. |-+.+-++...+..++-+.++|+ .|..|+...|.
T Consensus 14 q~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfv 63 (319)
T KOG3832|consen 14 QTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFV 63 (319)
T ss_pred hhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566665433 66667677666665555555554 57777776663
No 47
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=50.31 E-value=17 Score=36.31 Aligned_cols=41 Identities=22% Similarity=0.174 Sum_probs=31.1
Q ss_pred EEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCCCCcceec
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPEPRDVYWD 182 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APeP~DIiW~ 182 (615)
.|||+|++..+|..|...++.- -...++++.|-+++||+=.
T Consensus 54 QA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~ 96 (221)
T KOG4206|consen 54 QAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQ 96 (221)
T ss_pred ceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhc
Confidence 9999999998888777655532 1235778888888888765
No 48
>smart00361 RRM_1 RNA recognition motif.
Probab=49.43 E-value=20 Score=28.68 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=19.3
Q ss_pred EEEEEecCHHHHHHHHHhhcCC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR 163 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~ 163 (615)
.|||+|++..+|..|.+.+...
T Consensus 39 ~~fV~f~~~~dA~~A~~~l~g~ 60 (70)
T smart00361 39 NVYITFERSEDAARAIVDLNGR 60 (70)
T ss_pred EEEEEECCHHHHHHHHHHhCCC
Confidence 7999999999999999877654
No 49
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=48.92 E-value=21 Score=27.61 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=18.8
Q ss_pred EEEEEecCHHHHHHHHHhhcC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQT 162 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~ 162 (615)
.|||+|++..+|..|.+.++.
T Consensus 41 ~a~V~F~~~~~a~~a~~~l~g 61 (70)
T PF00076_consen 41 YAFVEFESEEDAEKALEELNG 61 (70)
T ss_dssp EEEEEESSHHHHHHHHHHHTT
T ss_pred eEEEEEcCHHHHHHHHHHcCC
Confidence 999999999999999987654
No 50
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=48.57 E-value=39 Score=26.03 Aligned_cols=46 Identities=15% Similarity=0.338 Sum_probs=32.5
Q ss_pred HHHHhhhheeccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 048588 424 VYIHQVINVYNQEYESAAAFWPDVHGRIITALIVSQLLLMGLLSTKEA 471 (615)
Q Consensus 424 v~Ky~llyvy~~~~eSgG~~wp~~~~~i~~~l~l~ql~~~gl~~lk~~ 471 (615)
..||.++|.|+.+.... .+|- ++-+++++++++-+.-++++.+.+.
T Consensus 4 l~rH~~myfce~k~R~N-sF~f-Viik~vismimylilGi~L~yis~~ 49 (54)
T PF04835_consen 4 LFRHCFMYFCENKLRPN-SFWF-VIIKSVISMIMYLILGIALIYISSN 49 (54)
T ss_pred HHHHHHHHHHHhhcCCc-hHHH-HHHHHHHHHHHHHHHHHHHhhhccC
Confidence 46999999999876654 4664 4557778888887766676665443
No 51
>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins.; GO: 0016021 integral to membrane
Probab=43.37 E-value=6.6e+02 Score=30.23 Aligned_cols=18 Identities=6% Similarity=0.132 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhhhhe
Q 048588 415 IVFFALAFVVYIHQVINV 432 (615)
Q Consensus 415 ~~yF~l~y~v~Ky~llyv 432 (615)
++-.++.||.+||+++|.
T Consensus 211 ~l~~a~~y~L~ry~Ll~s 228 (774)
T PF03699_consen 211 FLLKAVGYWLDRYELLYS 228 (774)
T ss_pred HHHHHHHHHHHHHhHeec
Confidence 445678899999999998
No 52
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=41.11 E-value=1.6e+02 Score=30.73 Aligned_cols=29 Identities=17% Similarity=0.129 Sum_probs=23.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhheec
Q 048588 406 VAPFLLPFIIVFFALAFVVYIHQVINVYN 434 (615)
Q Consensus 406 i~Plilpf~~~yF~l~y~v~Ky~llyvy~ 434 (615)
-.|..+++|+++.++.+.+||+-+.-+-.
T Consensus 44 ~~~~ai~~glvwgl~I~~lDR~ivss~~~ 72 (301)
T PF14362_consen 44 PVWAAIPFGLVWGLVIFNLDRFIVSSIRK 72 (301)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 33888999999999999999998875543
No 53
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=38.93 E-value=35 Score=26.70 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=18.3
Q ss_pred EEEEEecCHHHHHHHHHhhc
Q 048588 142 TAFVSFKTRWGAAVCAQTQQ 161 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~ 161 (615)
.|||+|.|..+|..|.+...
T Consensus 41 ~a~v~f~~~~~a~~al~~~~ 60 (70)
T PF14259_consen 41 FAFVEFSSEEDAKRALELLN 60 (70)
T ss_dssp EEEEEESSHHHHHHHHHHHT
T ss_pred EEEEEeCCHHHHHHHHHHCC
Confidence 89999999999999998764
No 54
>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1.
Probab=38.27 E-value=1.3e+02 Score=28.03 Aligned_cols=40 Identities=25% Similarity=0.415 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHh
Q 048588 389 GEPQIQLYFLLGLVYAVV-APFLLPFIIVFFALAFVVYIHQ 428 (615)
Q Consensus 389 ~y~~~ll~~~i~l~Ys~i-~Plilpf~~~yF~l~y~v~Ky~ 428 (615)
...+...++++.++|+.+ .|..+...++.....+++++.+
T Consensus 40 F~~NY~~i~~~~~~~~ll~~P~~l~~~~~~~~~~~~~~~~~ 80 (153)
T PF03208_consen 40 FQTNYLLIFLLLFLIFLLTNPFFLLVLLLVVALWAFIYKSR 80 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 344444444444444443 5776666666555555555543
No 55
>COG5438 Predicted multitransmembrane protein [Function unknown]
Probab=36.28 E-value=3e+02 Score=29.90 Aligned_cols=60 Identities=22% Similarity=0.308 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHhhhhhhHHHHHHHHHHHhhhhhc
Q 048588 246 QGFLPGIALKIFLIFLPDILMLMSKSEGFISRAALGRRSATRYYIFQFINVFLGSIITGT 305 (615)
Q Consensus 246 ~g~LPslil~i~~~llP~il~~ls~~eg~~S~S~~e~s~~~k~f~F~~~Nvflv~~l~gs 305 (615)
..+..+++.+++..++-++...+.+.+|.......+.....+.--.-+-+.++..++.|+
T Consensus 206 ~A~~~Ti~~~~ls~il~~~~i~~~~l~G~~~E~~~~l~~~~~~v~i~~~~~~~~~viIg~ 265 (385)
T COG5438 206 AAFIGTILGTLLSIILAYISIYMTNLSGFGDEDLDELTYLSKNVGINFSGLFLAGVIIGS 265 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhHHHhcCCcccCcchhhhHHHHHHHHH
Confidence 344455556666677888888999999999988888888887755555556665555443
No 56
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=35.93 E-value=65 Score=35.48 Aligned_cols=56 Identities=16% Similarity=0.042 Sum_probs=36.2
Q ss_pred EEEEEecCHHHHHHHHHhhcCC---CCCcceeecCCCCCcceecccccChhhHHHHHHH
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR---NPTLWLTDWAPEPRDVYWDNLAIPFVSLTIRRLI 197 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~---~p~~~~v~~APeP~DIiW~NL~~~~~~r~~R~~~ 197 (615)
+|||||.+...|+.|...+.+. ....+.+...-.-.-..=.|+-.++.+--++.-+
T Consensus 127 YAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK~k~keeIlee~ 185 (506)
T KOG0117|consen 127 YAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPKTKKKEEILEEM 185 (506)
T ss_pred eEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEeccCCccccHHHHHHHH
Confidence 9999999999999999887654 2223333333344556666666666555544433
No 57
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=34.29 E-value=3.3e+02 Score=26.84 Aligned_cols=21 Identities=14% Similarity=0.426 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHhhccc
Q 048588 477 LLITLPILTIWFHRFCKGRYE 497 (615)
Q Consensus 477 ~~i~L~i~ti~f~~~~~~~f~ 497 (615)
..+.+-++++...+|.+++|.
T Consensus 182 ~~iiig~i~~~~~~~lkkk~~ 202 (206)
T PF06570_consen 182 VYIIIGVIAFALRFYLKKKYN 202 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 444555667778899998885
No 58
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=33.82 E-value=1.3e+02 Score=33.54 Aligned_cols=76 Identities=20% Similarity=0.271 Sum_probs=51.7
Q ss_pred ceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccc
Q 048588 38 FTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTGFL 117 (615)
Q Consensus 38 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~g~~ 117 (615)
++|.|.|||.+..| +.|...|.+. |.+.++.++||- . ..+|+
T Consensus 19 ~~v~vgnip~~~se---~~l~~~~~~~--g~v~s~~~v~D~--------------------------~-tG~~~------ 60 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSE---EQLLSIFSGV--GPVLSFRLVYDR--------------------------E-TGKPK------ 60 (435)
T ss_pred cceEecCCCCcccH---HHHHHHHhcc--Cccceeeecccc--------------------------c-CCCcC------
Confidence 89999999997654 6788888765 457777666553 1 11111
Q ss_pred CCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCCC--CCcceeecCC
Q 048588 118 GLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTRN--PTLWLTDWAP 174 (615)
Q Consensus 118 g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~~--p~~~~v~~AP 174 (615)
| .||+.|.+..+|..|...+.+.+ +..+++..|.
T Consensus 61 G-----------------------~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~ 96 (435)
T KOG0108|consen 61 G-----------------------FGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYAS 96 (435)
T ss_pred c-----------------------eeeEecCchhhHHHHHHhcCCcccCCceEEeeccc
Confidence 1 78999999999988888776543 3455555544
No 59
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=33.16 E-value=2.8e+02 Score=32.92 Aligned_cols=53 Identities=17% Similarity=0.388 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhheeccCCCCCCCchHHHH
Q 048588 390 EPQIQLYFLLGLVYAVVAPFLLPFIIVFFALAFVVYIHQVINVYNQEYESAAAFWPDVH 448 (615)
Q Consensus 390 y~~~ll~~~i~l~Ys~i~Plilpf~~~yF~l~y~v~Ky~llyvy~~~~eSgG~~wp~~~ 448 (615)
.+..+++.+|+++==.|+=+.+|.-++||+..-+||=+- |+.. -+|-..|++.
T Consensus 73 ~~~~~~~~~~~~~~d~~~~~~~p~~~~~~~~~~~v~~~~---~~~~---~~~~~~~~~~ 125 (697)
T PF09726_consen 73 LAFSVFFVCIAFTSDLICLFFIPVHWLFFAASTYVWVQY---VWHT---DRGICLPTVS 125 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---hhhc---cCCccHHHHH
Confidence 345666777777777899999999999999998888543 3322 2566677765
No 60
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=32.70 E-value=50 Score=33.16 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=19.1
Q ss_pred eEEEEEecCHHHHHHHHHhhcC
Q 048588 141 ATAFVSFKTRWGAAVCAQTQQT 162 (615)
Q Consensus 141 I~AFVtF~s~~~A~~~~Q~~~~ 162 (615)
.+|||||.|.+.|..|...+..
T Consensus 78 pvaFatF~s~q~A~aamnaLNG 99 (284)
T KOG1457|consen 78 PVAFATFTSHQFALAAMNALNG 99 (284)
T ss_pred ceEEEEecchHHHHHHHHHhcC
Confidence 4899999999999999887654
No 61
>PF05620 DUF788: Protein of unknown function (DUF788); InterPro: IPR008506 This family consists of several eukaryotic proteins of unknown function.
Probab=32.15 E-value=3.4e+02 Score=25.99 Aligned_cols=58 Identities=5% Similarity=0.125 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhhhheeccCCCCCCCchHH---------HHHHHHHHHHHHHHHHHHHHhhcccc
Q 048588 415 IVFFALAFVVYIHQVINVYNQEYESAAAFWPD---------VHGRIITALIVSQLLLMGLLSTKEAA 472 (615)
Q Consensus 415 ~~yF~l~y~v~Ky~llyvy~~~~eSgG~~wp~---------~~~~i~~~l~l~ql~~~gl~~lk~~~ 472 (615)
.+.+.+.+++-=|.+-+.-+|.|+.+|++=.. +...+.--+++.=++-++.+.....|
T Consensus 51 ~~~~~~~~~~~~~~l~~~~rp~~~~~g~Lv~~G~DL~~~G~l~ey~~Diiylt~~vq~l~~~s~~~w 117 (170)
T PF05620_consen 51 YLLFSLPAIFCYYFLEKMARPKYDETGELVDAGEDLNQPGGLTEYMFDIIYLTWFVQVLSIISNKFW 117 (170)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcCCCCCeecCcccccCCcchHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444445666778888744433211 34555555555545544444433343
No 62
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=31.68 E-value=2.4e+02 Score=30.70 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=17.8
Q ss_pred EEEEEecCHHHHHHHHHhhc
Q 048588 142 TAFVSFKTRWGAAVCAQTQQ 161 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~ 161 (615)
-|||.|++.++|..|+|..+
T Consensus 326 eAFIqm~nae~a~aaaqk~h 345 (508)
T KOG1365|consen 326 EAFIQMRNAERARAAAQKCH 345 (508)
T ss_pred hhhhhhhhhHHHHHHHHHHH
Confidence 79999999999999998654
No 63
>smart00362 RRM_2 RNA recognition motif.
Probab=28.90 E-value=63 Score=24.23 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=17.7
Q ss_pred EEEEEecCHHHHHHHHHhhc
Q 048588 142 TAFVSFKTRWGAAVCAQTQQ 161 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~ 161 (615)
.|||+|++..+|..|.+.+.
T Consensus 41 ~~~v~f~~~~~a~~a~~~~~ 60 (72)
T smart00362 41 FAFVEFESEEDAEKAIEALN 60 (72)
T ss_pred eEEEEeCCHHHHHHHHHHhC
Confidence 89999999999999887654
No 64
>PRK09702 PTS system arbutin-specific transporter subunit IIB; Provisional
Probab=28.42 E-value=62 Score=30.98 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhe
Q 048588 410 LLPFIIVFFALAFVVYIHQVINV 432 (615)
Q Consensus 410 ilpf~~~yF~l~y~v~Ky~llyv 432 (615)
.+|+|++||++.|+++|+.+.+-
T Consensus 12 ~i~iGl~~f~iYyfvF~flI~kf 34 (161)
T PRK09702 12 QIAIGLCFTLLYFVVFRTLILQF 34 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 45667777777777777777544
No 65
>PRK13735 conjugal transfer mating pair stabilization protein TraG; Provisional
Probab=28.35 E-value=1.6e+02 Score=36.08 Aligned_cols=52 Identities=15% Similarity=0.154 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhheeccCCCCCCCchHHHH
Q 048588 389 GEPQIQLYFLLGLVYAVVAPFLLPFIIVFFALAFVVYIHQVINVYNQEYESAAAFWPDVH 448 (615)
Q Consensus 389 ~y~~~ll~~~i~l~Ys~i~Plilpf~~~yF~l~y~v~Ky~llyvy~~~~eSgG~~wp~~~ 448 (615)
.|=.++..++.+++|+ +.|++.+++++.-.-.-+...|-..++|-. +||.++
T Consensus 323 ~~LP~m~svl~~i~yg-lFPlV~llallp~~g~~vLkgY~~~~iwLq-------lWppLf 374 (942)
T PRK13735 323 RTLPMMQTILMGIAIG-IFPLLVLAAVFNKLTLSVLKGYVFALMWLQ-------SWPLLY 374 (942)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHhccchHHHHHHHHHHHHHHH-------HHHHHH
Confidence 3444566667777777 568888888876422224556666666653 588765
No 66
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=27.43 E-value=79 Score=30.86 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=25.7
Q ss_pred cceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEe
Q 048588 37 QFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVS 76 (615)
Q Consensus 37 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~ 76 (615)
.+||.|.|||.+.++ +.|.++|....+ +.++.+.+
T Consensus 115 ~~~l~v~nL~~~~~~---~~l~~~F~~~g~--~~~~~~~~ 149 (306)
T COG0724 115 NNTLFVGNLPYDVTE---EDLRELFKKFGP--VKRVRLVR 149 (306)
T ss_pred CceEEEeCCCCCCCH---HHHHHHHHhcCc--eeEEEeee
Confidence 489999999997665 788888887754 44444443
No 67
>smart00360 RRM RNA recognition motif.
Probab=27.23 E-value=68 Score=23.91 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=17.4
Q ss_pred EEEEEecCHHHHHHHHHhhc
Q 048588 142 TAFVSFKTRWGAAVCAQTQQ 161 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~ 161 (615)
.|||+|.+..+|..|.+.+.
T Consensus 40 ~a~v~f~~~~~a~~a~~~~~ 59 (71)
T smart00360 40 FAFVEFESEEDAEKALEALN 59 (71)
T ss_pred eEEEEeCCHHHHHHHHHHcC
Confidence 79999999999998877654
No 68
>PF09874 DUF2101: Predicted membrane protein (DUF2101); InterPro: IPR018663 This family of conserved hypothetical proteins has no known function.
Probab=26.95 E-value=2.8e+02 Score=27.50 Aligned_cols=93 Identities=13% Similarity=0.217 Sum_probs=49.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHhhhheeccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccccc---cchh
Q 048588 401 LVYAVVAPFLLPFIIVFFALAFVVYIHQVINVYNQEYESAAAFWPDVHGRIITALIVSQLLLMGLLSTKEAAQ---STPL 477 (615)
Q Consensus 401 l~Ys~i~Plilpf~~~yF~l~y~v~Ky~llyvy~~~~eSgG~~wp~~~~~i~~~l~l~ql~~~gl~~lk~~~~---~~~~ 477 (615)
.++..-.|+.++.+++||+...++-+.|.=+.++. |- |.. + ..-+|++.+- +..|...+++... ....
T Consensus 50 ~v~~~~~~~~i~~~i~yf~yLrYiL~~~~~f~id~--ep----YR~-F-Y~~Isli~~l-~~~gyvlvr~~s~~~~~y~~ 120 (206)
T PF09874_consen 50 YVFFISPLILIPLFIFYFIYLRYILIRNRNFMIDF--EP----YRF-F-YYGISLIGFL-SFLGYVLVRRFSFEVYPYYT 120 (206)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhccceeEech--hH----HHH-H-HHHHhhhhhe-eecchhhheeccchhhhHHH
Confidence 34444566677788888887766655555444432 21 111 1 3333444332 3344444444322 2222
Q ss_pred HHHH-HHHHHHHHHHHhhcccccccc
Q 048588 478 LITL-PILTIWFHRFCKGRYEPAFVR 502 (615)
Q Consensus 478 ~i~L-~i~ti~f~~~~~~~f~~~~~~ 502 (615)
.+.+ .+..++|.+|.+.+|.+...+
T Consensus 121 yL~~v~laVl~fr~~Fr~ky~RdyTy 146 (206)
T PF09874_consen 121 YLGFVFLAVLAFRYYFRSKYGRDYTY 146 (206)
T ss_pred HHHHHHHHHHHHhhheeeeeccccee
Confidence 2222 235567999999999987765
No 69
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=26.47 E-value=75 Score=32.56 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=16.8
Q ss_pred EEEEEecCHHHHHHHHHhh
Q 048588 142 TAFVSFKTRWGAAVCAQTQ 160 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~ 160 (615)
+|||+|.+..++..|....
T Consensus 234 ygfVSf~~pad~~rAmrem 252 (290)
T KOG0226|consen 234 YGFVSFRDPADYVRAMREM 252 (290)
T ss_pred ceeeeecCHHHHHHHHHhh
Confidence 9999999999998887654
No 70
>PF06790 UPF0259: Uncharacterised protein family (UPF0259); InterPro: IPR009627 This is a group of proteins of unknown function.
Probab=26.18 E-value=6.4e+02 Score=25.86 Aligned_cols=83 Identities=10% Similarity=0.191 Sum_probs=44.7
Q ss_pred hHHHHhhhhhhHHHHHHHHHHH-hhhhhcHHHHHHHHHhccCCCHHHHHhhhcCchhHHHHHHHHHHhhhhhhHhhhchH
Q 048588 278 AALGRRSATRYYIFQFINVFLG-SIITGTAFQQLDNFMHQSANDIPKTIGISIPMKAMFFITYIMVDGWAGVAGEILRLK 356 (615)
Q Consensus 278 S~~e~s~~~k~f~F~~~Nvflv-~~l~gs~~~~l~~~~~~p~~~i~~~Lg~~lp~~s~FFi~yii~~~~~~~~~~Llr~~ 356 (615)
|..|..+.-|......+..+++ +.+.|++...++...++-..++.+.++.++|.--.+++-.++..-....++-++=++
T Consensus 71 s~eqq~~ll~~sa~~~~s~Lig~~lL~g~li~li~~~s~g~~~s~~~~i~~~~~~lp~LllL~~l~tllI~lG~~L~ivP 150 (248)
T PF06790_consen 71 SPEQQNVLLKASAASTFSSLIGNTLLSGGLITLIQAVSNGQRVSILQAIGASLPLLPRLLLLIFLCTLLIQLGFMLFIVP 150 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4555666666666666555555 334566666666554332256777788877754444443333333334444455455
Q ss_pred HHHH
Q 048588 357 PLIV 360 (615)
Q Consensus 357 ~li~ 360 (615)
+++.
T Consensus 151 GI~l 154 (248)
T PF06790_consen 151 GIIL 154 (248)
T ss_pred HHHH
Confidence 5443
No 71
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=25.84 E-value=83 Score=23.71 Aligned_cols=22 Identities=23% Similarity=0.278 Sum_probs=18.9
Q ss_pred EEEEEecCHHHHHHHHHhhcCC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR 163 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~ 163 (615)
.|||+|++..+|+.|.+.....
T Consensus 42 ~~~v~f~s~~~a~~a~~~~~~~ 63 (74)
T cd00590 42 FAFVEFEDEEDAEKALEALNGK 63 (74)
T ss_pred EEEEEECCHHHHHHHHHHhCCC
Confidence 8999999999999998876543
No 72
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=25.09 E-value=4.7e+02 Score=29.81 Aligned_cols=19 Identities=5% Similarity=0.197 Sum_probs=10.6
Q ss_pred CchHHHHHHHHHHHHHHHH
Q 048588 442 AFWPDVHGRIITALIVSQL 460 (615)
Q Consensus 442 ~~wp~~~~~i~~~l~l~ql 460 (615)
.+|++.-+-+.++++.+=.
T Consensus 379 ~lYr~F~n~l~~~Vvas~~ 397 (518)
T KOG2568|consen 379 SLYRKFTNTLAFSVVASFA 397 (518)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4565666666666555433
No 73
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=24.79 E-value=58 Score=31.55 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=25.3
Q ss_pred EEEEEecCHHHHHHHHHhhcCCC--CCcceeec
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTRN--PTLWLTDW 172 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~~--p~~~~v~~ 172 (615)
.|||.|++..+|..|...+-.++ ...+.||+
T Consensus 49 fAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~ 81 (195)
T KOG0107|consen 49 FAFVEFEDPRDAEDAVRYLDGKDICGSRIRVEL 81 (195)
T ss_pred ceEEeccCcccHHHHHhhcCCccccCceEEEEe
Confidence 69999999999999999887666 34577765
No 74
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=23.78 E-value=1.6e+02 Score=23.61 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=27.7
Q ss_pred eEEEecCCCCCCccHHHHHHHHhcccCCCceE-----EEEEEecCC
Q 048588 39 TVLVRNVPPDPDESVTQLVEHFFLVNHPDHYL-----THQVVSNAN 79 (615)
Q Consensus 39 TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~-----~v~i~~d~~ 79 (615)
+|.|+|+-.-+.+.++..+.+||....|..+. ++.+++.-.
T Consensus 7 avhirGvd~lsT~dI~~y~~~y~~~~~~~~IEWIdDtScNvvf~d~ 52 (62)
T PF10309_consen 7 AVHIRGVDELSTDDIKAYFSEYFDEEGPFRIEWIDDTSCNVVFKDE 52 (62)
T ss_pred eEEEEcCCCCCHHHHHHHHHHhcccCCCceEEEecCCcEEEEECCH
Confidence 79999998765555666666665544676554 677888654
No 75
>PLN03074 auxin influx permease; Provisional
Probab=21.92 E-value=2.1e+02 Score=32.23 Aligned_cols=21 Identities=5% Similarity=0.333 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 048588 251 GIALKIFLIFLPDILMLMSKS 271 (615)
Q Consensus 251 slil~i~~~llP~il~~ls~~ 271 (615)
++..+.+..++|.++.....+
T Consensus 382 s~~~s~l~~i~P~l~~l~~~~ 402 (473)
T PLN03074 382 ALLVSFTVYIIPSLAHMLTYR 402 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 344556667788888887544
No 76
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=20.75 E-value=1.3e+02 Score=24.35 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=26.8
Q ss_pred EEEEEecCHHHHHHHHHhhcCCCCCcceeecCCCCCcc
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTRNPTLWLTDWAPEPRDV 179 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~~p~~~~v~~APeP~DI 179 (615)
...++|.|..+|-.+-+.+... +..++..|-|++|
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~---gi~~~liP~P~~i 37 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKN---GIPVRLIPTPREI 37 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHC---CCcEEEeCCChhc
Confidence 3689999999998888876544 3456777888877
No 77
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=20.74 E-value=1.2e+02 Score=34.40 Aligned_cols=33 Identities=30% Similarity=0.300 Sum_probs=24.7
Q ss_pred ceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEE
Q 048588 38 FTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVV 75 (615)
Q Consensus 38 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~ 75 (615)
+||.|||+|=++.+ +.|.++|+++.+ +..+.+|
T Consensus 293 ~tVFvRNL~fD~tE---Eel~~~fskFG~--v~ya~iV 325 (678)
T KOG0127|consen 293 KTVFVRNLPFDTTE---EELKEHFSKFGE--VKYAIIV 325 (678)
T ss_pred ceEEEecCCccccH---HHHHHHHHhhcc--ceeEEEE
Confidence 79999999998765 788888888754 4334444
No 78
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=20.45 E-value=3.5e+02 Score=30.45 Aligned_cols=82 Identities=21% Similarity=0.209 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhheeccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048588 391 PQIQLYFLLGLVYAVVAPFLLPFIIVFFALAFVVYIHQVINVYNQEYESAAAFWPDVHGRIITALIVSQLLLMGLLSTKE 470 (615)
Q Consensus 391 ~~~ll~~~i~l~Ys~i~Plilpf~~~yF~l~y~v~Ky~llyvy~~~~eSgG~~wp~~~~~i~~~l~l~ql~~~gl~~lk~ 470 (615)
|..+.+.++.++|++..-++ |.++|.++--.| |..+.-+.++...-.-+=+..+++|++. +-+.-+.
T Consensus 264 ~yL~~ia~~vi~y~~~~nlv-----------e~~~k~~v~~~~-p~~~~~~~f~g~~~~~~gi~tl~~~l~~-~~l~~~~ 330 (472)
T TIGR00769 264 PYILDLALLVIAYGISINLV-----------EVTWKSKLKAQY-PSPNEYSAFMGDFSTWTGVVSVTMMLLS-GNVIRKY 330 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 45666666666777666544 688898887777 5555556677775444444445667666 7777677
Q ss_pred ccccchhHHHHHHHH
Q 048588 471 AAQSTPLLITLPILT 485 (615)
Q Consensus 471 ~~~~~~~~i~L~i~t 485 (615)
++..+.+..|+.++.
T Consensus 331 Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 331 GWLTAALITPLVMLL 345 (472)
T ss_pred hHHHHHHHHHHHHHH
Confidence 777666666665544
No 79
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=20.24 E-value=1.4e+02 Score=33.01 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=29.0
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecC
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNA 78 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~ 78 (615)
+...||.|.|||...++ +.|+++|+.+ |.+.++.+.+|-
T Consensus 184 p~~~~l~v~nl~~~~te---~~l~~~f~~~--G~i~~v~~~~d~ 222 (457)
T TIGR01622 184 PNFLKLYVGNLHFNITE---QELRQIFEPF--GDIEDVQLHRDP 222 (457)
T ss_pred CCCCEEEEcCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEcC
Confidence 34579999999997665 7788888765 457777777553
No 80
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=20.21 E-value=5.6e+02 Score=24.57 Aligned_cols=15 Identities=33% Similarity=0.609 Sum_probs=9.6
Q ss_pred cCCCCCcc-eeccccc
Q 048588 172 WAPEPRDV-YWDNLAI 186 (615)
Q Consensus 172 ~APeP~DI-iW~NL~~ 186 (615)
.+|+++|. -|.|=-+
T Consensus 33 a~Pd~~D~~kW~nRVi 48 (188)
T KOG4050|consen 33 ARPDFNDFKKWNNRVI 48 (188)
T ss_pred cCCCCccHHHHHHHHH
Confidence 57999986 3555333
No 81
>PRK02868 hypothetical protein; Provisional
Probab=20.13 E-value=9.5e+02 Score=24.63 Aligned_cols=82 Identities=9% Similarity=0.091 Sum_probs=45.8
Q ss_pred hhHHHHhhhhhhHHHHHHHHHHHhh-hhhcHHHHHHHHHhccCCCHHHHHhhhcCchhHHHHHHHHHHhhhhhhHhhhch
Q 048588 277 RAALGRRSATRYYIFQFINVFLGSI-ITGTAFQQLDNFMHQSANDIPKTIGISIPMKAMFFITYIMVDGWAGVAGEILRL 355 (615)
Q Consensus 277 ~S~~e~s~~~k~f~F~~~Nvflv~~-l~gs~~~~l~~~~~~p~~~i~~~Lg~~lp~~s~FFi~yii~~~~~~~~~~Llr~ 355 (615)
-|..|+.+.-|......+..+++.+ +.|++...++...++-..+..+.++.+.|.-..+|+=.++..-....++-++-+
T Consensus 67 ms~eqq~~ll~~s~~~~~s~lig~~lL~g~il~~I~~~s~g~~v~~~~~~~~s~~~lp~l~lL~fl~tLlI~lG~~L~ii 146 (245)
T PRK02868 67 MSPEQQQILLKASAASTFSGLIGNTLLLGGILTLIQLVSAGQRVSALRAIGASAPILPKLLILIFLTTLLIQLGFMLVVV 146 (245)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3567777777777666665555543 356677777766543324566677777776655554333322223333444434
Q ss_pred HHH
Q 048588 356 KPL 358 (615)
Q Consensus 356 ~~l 358 (615)
+++
T Consensus 147 PGI 149 (245)
T PRK02868 147 PGI 149 (245)
T ss_pred HHH
Confidence 443
Done!