Query 048588
Match_columns 615
No_of_seqs 268 out of 896
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 19:04:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048588.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048588hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dnp_A RNA-binding protein 14; 96.2 0.021 7.3E-07 47.0 8.9 72 33-173 5-78 (90)
2 2dnz_A Probable RNA-binding pr 96.1 0.058 2E-06 44.5 11.2 82 35-177 3-86 (95)
3 1fxl_A Paraneoplastic encephal 96.1 0.018 6E-07 52.4 8.5 38 36-78 1-38 (167)
4 4fxv_A ELAV-like protein 1; RN 96.0 0.038 1.3E-06 46.7 9.9 77 36-173 18-96 (99)
5 2jrs_A RNA-binding protein 39; 96.0 0.05 1.7E-06 46.7 10.7 84 34-178 23-108 (108)
6 2lkz_A RNA-binding protein 5; 96.0 0.013 4.6E-07 49.4 6.8 80 35-173 7-92 (95)
7 2dgt_A RNA-binding protein 30; 96.0 0.028 9.7E-07 46.4 8.6 72 33-173 6-79 (92)
8 3s8s_A Histone-lysine N-methyl 95.7 0.058 2E-06 46.6 10.0 80 35-175 4-85 (110)
9 1b7f_A Protein (SXL-lethal pro 95.7 0.027 9.1E-07 51.3 8.2 38 36-78 2-39 (168)
10 2cpd_A Apobec-1 stimulating pr 95.7 0.059 2E-06 45.0 9.7 73 34-173 12-86 (99)
11 2dgs_A DAZ-associated protein 95.6 0.13 4.3E-06 42.9 11.4 81 34-176 7-89 (99)
12 3nmr_A Cugbp ELAV-like family 95.6 0.066 2.2E-06 48.9 10.5 38 36-78 2-39 (175)
13 1x5s_A Cold-inducible RNA-bind 95.6 0.059 2E-06 45.2 9.3 79 34-173 9-89 (102)
14 2e5h_A Zinc finger CCHC-type a 95.6 0.067 2.3E-06 44.1 9.4 39 33-76 12-50 (94)
15 2do4_A Squamous cell carcinoma 95.5 0.1 3.4E-06 43.6 10.5 79 35-175 15-95 (100)
16 2dgu_A Heterogeneous nuclear r 95.5 0.052 1.8E-06 45.9 8.6 72 35-175 9-82 (103)
17 3md3_A Nuclear and cytoplasmic 95.5 0.027 9.2E-07 51.0 7.3 36 38-78 1-36 (166)
18 3mdf_A Peptidyl-prolyl CIS-tra 95.5 0.066 2.2E-06 43.2 8.9 37 35-76 5-41 (85)
19 2dnh_A Bruno-like 5, RNA bindi 95.5 0.14 4.8E-06 43.1 11.2 79 34-174 12-95 (105)
20 2cpz_A CUG triplet repeat RNA- 95.4 0.085 2.9E-06 45.4 9.8 79 35-174 23-103 (115)
21 3md1_A Nuclear and cytoplasmic 95.4 0.11 3.8E-06 41.5 9.9 76 38-174 2-79 (83)
22 3p5t_L Cleavage and polyadenyl 95.3 0.042 1.4E-06 45.3 7.3 80 38-176 2-83 (90)
23 1x5u_A Splicing factor 3B subu 95.3 0.12 4E-06 43.6 10.3 81 34-175 12-94 (105)
24 2dgp_A Bruno-like 4, RNA bindi 95.3 0.1 3.5E-06 44.0 10.0 81 34-175 10-95 (106)
25 2dgv_A HnRNP M, heterogeneous 95.3 0.15 5.1E-06 41.7 10.6 79 34-175 5-85 (92)
26 1whw_A Hypothetical protein ri 95.3 0.12 4.2E-06 42.9 10.2 81 35-176 6-88 (99)
27 2dhg_A TRNA selenocysteine ass 95.3 0.13 4.5E-06 43.2 10.4 79 34-173 6-87 (104)
28 2dgo_A Cytotoxic granule-assoc 95.3 0.14 4.9E-06 43.9 10.8 39 34-77 12-50 (115)
29 2cqc_A Arginine/serine-rich sp 95.2 0.11 3.7E-06 42.8 9.5 38 35-77 13-50 (95)
30 1p27_B RNA-binding protein 8A; 95.1 0.17 5.9E-06 42.6 10.7 78 35-173 21-100 (106)
31 2cpj_A Non-POU domain-containi 95.1 0.11 3.7E-06 43.4 9.3 76 34-176 12-89 (99)
32 2cqi_A Nucleolysin TIAR; RNA r 95.1 0.16 5.4E-06 42.7 10.3 78 35-175 13-92 (103)
33 2cq3_A RNA-binding protein 9; 95.0 0.25 8.6E-06 41.4 11.5 79 34-175 12-92 (103)
34 2cq0_A Eukaryotic translation 95.0 0.15 5.3E-06 42.7 10.1 79 34-173 12-92 (103)
35 2cph_A RNA binding motif prote 95.0 0.19 6.6E-06 42.3 10.7 81 35-175 13-96 (107)
36 2cqg_A TDP-43, TAR DNA-binding 95.0 0.15 5.2E-06 42.7 10.0 80 35-175 13-92 (103)
37 1x4c_A Splicing factor, argini 95.0 0.11 3.7E-06 44.4 9.0 36 35-75 13-48 (108)
38 2dng_A Eukaryotic translation 95.0 0.21 7.2E-06 41.9 10.8 37 35-77 13-49 (103)
39 2div_A TRNA selenocysteine ass 94.9 0.17 5.8E-06 42.1 10.0 40 33-77 5-45 (99)
40 2lxi_A RNA-binding protein 10; 94.9 0.032 1.1E-06 46.3 5.4 32 142-173 46-80 (91)
41 2dnm_A SRP46 splicing factor; 94.9 0.14 4.6E-06 43.1 9.4 78 35-173 11-90 (103)
42 2cqd_A RNA-binding region cont 94.9 0.15 5.1E-06 43.9 9.8 37 35-76 15-51 (116)
43 2khc_A Testis-specific RNP-typ 94.9 0.13 4.4E-06 44.4 9.4 37 35-76 38-74 (118)
44 2x1f_A MRNA 3'-END-processing 94.8 0.14 4.8E-06 42.4 9.1 79 37-176 2-82 (96)
45 4f25_A Polyadenylate-binding p 94.7 0.16 5.6E-06 43.8 9.7 74 37-173 5-80 (115)
46 2d9p_A Polyadenylate-binding p 94.7 0.27 9.1E-06 41.2 10.8 77 35-174 13-91 (103)
47 1h2v_Z 20 kDa nuclear CAP bind 94.7 0.19 6.3E-06 45.8 10.5 79 36-175 38-118 (156)
48 2fy1_A RNA-binding motif prote 94.7 0.19 6.4E-06 43.6 10.1 78 35-174 5-84 (116)
49 1wi8_A EIF-4B, eukaryotic tran 94.7 0.19 6.4E-06 42.3 9.8 37 35-77 13-49 (104)
50 1x5t_A Splicing factor 3B subu 94.7 0.11 3.6E-06 43.0 8.1 33 142-174 50-84 (96)
51 2dnq_A RNA-binding protein 4B; 94.7 0.26 9E-06 40.2 10.4 70 35-173 6-77 (90)
52 1x4g_A Nucleolysin TIAR; struc 94.6 0.19 6.4E-06 42.8 9.6 74 35-175 23-98 (109)
53 4a8x_A RNA-binding protein wit 94.6 0.12 4.2E-06 41.7 8.1 78 36-173 3-82 (88)
54 1oo0_B CG8781-PA, drosophila Y 94.6 0.17 5.7E-06 43.0 9.3 36 35-75 24-59 (110)
55 1x4h_A RNA-binding protein 28; 94.5 0.23 7.9E-06 42.1 10.1 37 35-76 13-49 (111)
56 2ku7_A MLL1 PHD3-CYP33 RRM chi 94.5 0.15 5E-06 45.2 9.1 36 35-75 61-96 (140)
57 2cqb_A Peptidyl-prolyl CIS-tra 94.5 0.11 3.7E-06 43.6 7.7 36 34-74 9-44 (102)
58 2la6_A RNA-binding protein FUS 94.5 0.27 9.3E-06 40.9 10.2 29 34-65 10-38 (99)
59 2a3j_A U1 small nuclear ribonu 94.2 0.21 7.3E-06 44.3 9.3 86 36-182 28-116 (127)
60 2kxn_B Transformer-2 protein h 94.2 0.31 1.1E-05 43.1 10.4 78 35-173 44-123 (129)
61 3ex7_B RNA-binding protein 8A; 94.1 0.25 8.7E-06 43.0 9.5 78 35-173 20-99 (126)
62 2dgx_A KIAA0430 protein; RRM d 94.1 0.16 5.6E-06 42.2 7.9 81 32-173 4-87 (96)
63 1whx_A Hypothetical protein ri 94.0 0.1 3.4E-06 45.0 6.6 74 35-175 8-83 (111)
64 1x5o_A RNA binding motif, sing 94.0 0.47 1.6E-05 40.4 11.0 38 35-77 23-60 (114)
65 1wf1_A RNA-binding protein RAL 94.0 0.18 6.2E-06 42.9 8.3 34 142-175 64-99 (110)
66 1wex_A Hypothetical protein (r 94.0 0.36 1.2E-05 41.1 10.0 36 35-75 13-48 (104)
67 2e44_A Insulin-like growth fac 93.9 0.29 9.8E-06 40.4 9.1 34 143-176 57-92 (96)
68 4f02_A Polyadenylate-binding p 93.9 0.42 1.4E-05 45.7 11.6 100 36-196 14-123 (213)
69 1x4a_A Splicing factor, argini 93.9 0.43 1.5E-05 40.4 10.4 35 35-74 20-54 (109)
70 2kt5_A RNA and export factor-b 93.9 0.29 1E-05 42.6 9.5 77 36-174 34-112 (124)
71 1wg1_A KIAA1579 protein, homol 93.8 0.1 3.6E-06 42.6 6.1 36 142-177 42-79 (88)
72 3sde_A Paraspeckle component 1 93.8 0.33 1.1E-05 48.1 10.9 95 35-196 20-116 (261)
73 2cqp_A RNA-binding protein 12; 93.8 0.13 4.5E-06 42.7 6.8 36 142-177 59-96 (98)
74 3lqv_A PRE-mRNA branch site pr 93.8 0.32 1.1E-05 41.6 9.4 94 35-194 6-101 (115)
75 3smz_A Protein raver-1, ribonu 93.7 0.38 1.3E-05 47.9 11.2 94 36-197 21-116 (284)
76 1p1t_A Cleavage stimulation fa 93.7 0.26 9E-06 41.2 8.5 80 36-176 7-88 (104)
77 3beg_B Splicing factor, argini 93.6 0.23 7.9E-06 42.9 8.3 35 36-75 15-49 (115)
78 2i2y_A Fusion protein consists 93.6 0.43 1.5E-05 43.0 10.5 75 35-175 71-147 (150)
79 2fc8_A NCL protein; structure 93.6 0.36 1.2E-05 40.3 9.3 34 142-175 56-91 (102)
80 1why_A Hypothetical protein ri 93.5 0.55 1.9E-05 38.8 10.2 72 35-173 15-90 (97)
81 2qfj_A FBP-interacting repress 93.5 0.67 2.3E-05 43.7 12.1 100 36-196 27-145 (216)
82 2cpi_A CCR4-NOT transcription 93.5 0.31 1.1E-05 41.6 8.8 82 35-174 13-99 (111)
83 1l3k_A Heterogeneous nuclear r 93.4 0.56 1.9E-05 43.5 11.3 101 35-196 11-124 (196)
84 2hvz_A Splicing factor, argini 93.4 0.26 8.9E-06 41.1 8.0 34 39-77 2-35 (101)
85 2jvo_A Nucleolar protein 3; nu 93.0 0.38 1.3E-05 41.0 8.5 70 35-173 29-100 (108)
86 3ns6_A Eukaryotic translation 92.9 0.21 7.1E-06 42.0 6.7 79 37-173 6-90 (100)
87 3n9u_C Cleavage and polyadenyl 92.9 0.44 1.5E-05 43.7 9.4 79 36-173 54-134 (156)
88 2cjk_A Nuclear polyadenylated 92.9 0.22 7.4E-06 45.1 7.2 100 36-196 2-107 (167)
89 2kvi_A Nuclear polyadenylated 92.8 0.33 1.1E-05 40.2 7.8 71 34-173 7-80 (96)
90 1u6f_A Tcubp1, RNA-binding pro 92.8 0.65 2.2E-05 41.0 10.3 77 36-173 41-119 (139)
91 2cpe_A RNA-binding protein EWS 92.8 0.42 1.4E-05 40.7 8.6 28 35-65 13-40 (113)
92 2la4_A Nuclear and cytoplasmic 92.7 0.44 1.5E-05 39.7 8.4 35 35-74 25-59 (101)
93 1rk8_A CG8781-PA, CG8781-PA pr 92.6 0.63 2.1E-05 42.7 10.2 38 35-77 70-107 (165)
94 2ki2_A SS-DNA binding protein 92.6 0.18 6.2E-06 41.1 5.8 77 38-176 2-80 (90)
95 2f3j_A RNA and export factor b 92.6 0.38 1.3E-05 45.1 8.7 83 37-181 88-172 (177)
96 2j76_E EIF-4B, EIF4B, eukaryot 92.5 0.42 1.4E-05 39.9 8.1 37 35-77 17-53 (100)
97 2ek1_A RNA-binding protein 12; 92.5 0.22 7.5E-06 40.9 6.2 29 34-65 12-40 (95)
98 2g4b_A Splicing factor U2AF 65 92.4 0.22 7.6E-06 45.3 6.7 39 36-77 3-50 (172)
99 2adc_A Polypyrimidine tract-bi 92.4 0.82 2.8E-05 44.2 11.1 36 35-75 32-68 (229)
100 2lea_A Serine/arginine-rich sp 92.2 0.31 1.1E-05 43.4 7.2 77 36-173 46-124 (135)
101 2e5g_A U6 snRNA-specific termi 92.2 0.89 3.1E-05 37.3 9.6 32 35-71 6-37 (94)
102 2kn4_A Immunoglobulin G-bindin 92.1 0.59 2E-05 42.3 9.1 77 36-173 69-147 (158)
103 2e5j_A Methenyltetrahydrofolat 92.1 0.8 2.7E-05 37.8 9.3 35 142-176 58-94 (97)
104 2dis_A Unnamed protein product 92.1 0.85 2.9E-05 38.4 9.6 36 35-74 6-41 (109)
105 2dnl_A Cytoplasmic polyadenyla 92.0 0.36 1.2E-05 41.5 7.1 28 35-65 6-33 (114)
106 2xnq_A Nuclear polyadenylated 91.9 1.1 3.6E-05 37.3 9.9 71 34-173 19-92 (97)
107 3smz_A Protein raver-1, ribonu 91.5 0.66 2.3E-05 46.1 9.5 40 34-78 92-131 (284)
108 1x4f_A Matrin 3; structural ge 91.2 0.7 2.4E-05 40.1 8.1 78 36-180 24-106 (112)
109 2qfj_A FBP-interacting repress 91.1 1.1 3.9E-05 42.0 10.4 77 36-173 124-202 (216)
110 1nu4_A U1A RNA binding domain; 90.8 1.1 3.8E-05 36.7 8.7 38 142-179 53-92 (97)
111 2cpx_A Hypothetical protein FL 90.8 0.95 3.2E-05 38.5 8.6 32 142-173 69-102 (115)
112 1qm9_A Polypyrimidine tract-bi 90.5 0.86 2.9E-05 42.5 8.8 34 36-74 2-36 (198)
113 2jvr_A Nucleolar protein 3; RN 90.5 0.54 1.9E-05 40.6 6.7 33 142-174 69-103 (111)
114 3q2s_C Cleavage and polyadenyl 90.5 0.88 3E-05 44.4 9.0 80 36-174 67-148 (229)
115 1fje_B Nucleolin RBD12, protei 89.8 0.38 1.3E-05 43.9 5.5 32 142-173 138-171 (175)
116 3tyt_A Heterogeneous nuclear r 89.4 2.4 8.1E-05 40.4 11.0 35 36-75 3-38 (205)
117 2pe8_A Splicing factor 45; RRM 89.4 2.4 8.2E-05 36.0 9.8 83 36-175 7-93 (105)
118 1fj7_A Nucleolin RBD1, protein 88.7 2.1 7.3E-05 35.3 8.9 31 142-173 60-92 (101)
119 3bs9_A Nucleolysin TIA-1 isofo 88.4 0.63 2.2E-05 37.3 5.3 38 35-77 4-41 (87)
120 3s7r_A Heterogeneous nuclear r 87.8 0.81 2.8E-05 36.8 5.5 39 34-77 8-46 (87)
121 2ghp_A U4/U6 snRNA-associated 87.5 2.2 7.4E-05 42.5 9.7 99 35-198 39-139 (292)
122 2diu_A KIAA0430 protein; struc 87.4 0.71 2.4E-05 38.9 5.0 40 142-181 48-89 (96)
123 2ywk_A Putative RNA-binding pr 87.4 0.9 3.1E-05 37.1 5.7 39 34-77 13-51 (95)
124 2dha_A FLJ20171 protein; RRM d 87.3 0.59 2E-05 41.1 4.7 47 24-77 14-62 (123)
125 4f02_A Polyadenylate-binding p 86.9 2.3 7.9E-05 40.4 9.2 74 37-173 103-178 (213)
126 2dgw_A Probable RNA-binding pr 86.4 0.87 3E-05 37.0 5.0 39 33-77 6-44 (91)
127 3u1l_A PRE-mRNA-splicing facto 85.2 2.9 9.9E-05 41.2 8.9 39 35-75 132-176 (240)
128 3ucg_A Polyadenylate-binding p 85.1 0.97 3.3E-05 36.3 4.7 37 36-77 5-41 (89)
129 3pgw_S U1-70K; protein-RNA com 84.5 2.7 9.1E-05 45.2 9.1 77 38-175 103-181 (437)
130 3pgw_A U1-A; protein-RNA compl 84.5 7 0.00024 38.5 11.6 39 35-75 7-46 (282)
131 1s79_A Lupus LA protein; RRM, 84.3 1.3 4.3E-05 37.5 5.2 38 35-77 9-46 (103)
132 2yh0_A Splicing factor U2AF 65 84.0 6.5 0.00022 36.1 10.6 26 36-64 3-28 (198)
133 3ulh_A THO complex subunit 4; 83.4 1.7 5.7E-05 36.4 5.6 39 34-77 26-64 (107)
134 3d2w_A TAR DNA-binding protein 83.3 1.1 3.6E-05 36.7 4.1 39 33-76 7-45 (89)
135 2do0_A HnRNP M, heterogeneous 83.2 1.8 6.3E-05 36.5 5.8 38 35-77 13-50 (114)
136 2ytc_A PRE-mRNA-splicing facto 83.0 1.8 6E-05 34.5 5.3 36 35-75 10-45 (85)
137 3sde_A Paraspeckle component 1 82.9 4.8 0.00016 39.5 9.6 37 36-77 95-131 (261)
138 1sjr_A Polypyrimidine tract-bi 81.6 6.6 0.00023 36.3 9.3 33 142-174 86-122 (164)
139 2cpf_A RNA binding motif prote 81.5 1.9 6.3E-05 35.4 5.1 39 35-78 3-41 (98)
140 2dh8_A DAZ-associated protein 81.3 1.6 5.6E-05 36.3 4.7 38 35-77 14-51 (105)
141 1x4e_A RNA binding motif, sing 81.1 1.8 6E-05 34.5 4.6 37 36-77 4-40 (85)
142 2cpy_A RNA-binding protein 12; 80.7 1.1 3.8E-05 38.3 3.5 36 35-75 13-49 (114)
143 2dnn_A RNA-binding protein 12; 80.5 0.93 3.2E-05 38.9 2.9 36 36-77 15-50 (109)
144 2err_A Ataxin-2-binding protei 80.3 1.8 6.1E-05 36.7 4.6 77 34-173 26-104 (109)
145 1wg5_A Heterogeneous nuclear r 80.2 2 6.8E-05 36.0 4.9 36 35-75 13-49 (104)
146 2xs2_A Deleted in azoospermia- 80.1 1.9 6.4E-05 35.7 4.7 37 35-76 7-43 (102)
147 1qm9_A Polypyrimidine tract-bi 79.9 5.1 0.00018 37.1 8.2 35 36-74 119-153 (198)
148 1wez_A HnRNP H', FTP-3, hetero 79.6 2.5 8.7E-05 35.4 5.4 37 35-77 13-49 (102)
149 1sjq_A Polypyrimidine tract-bi 79.5 2.1 7E-05 36.6 4.7 37 35-76 14-50 (105)
150 2adc_A Polypyrimidine tract-bi 79.1 9.3 0.00032 36.5 10.0 73 36-174 150-226 (229)
151 1uaw_A Mouse-musashi-1; RNP-ty 78.0 1.7 6E-05 33.7 3.6 34 39-77 2-35 (77)
152 2rs2_A Musashi-1, RNA-binding 77.7 2.1 7.2E-05 36.2 4.3 38 35-77 23-60 (109)
153 3r27_A HnRNP L, heterogeneous 77.3 3.5 0.00012 34.8 5.5 37 34-75 18-54 (100)
154 2db1_A Heterogeneous nuclear r 77.1 2.1 7.2E-05 36.8 4.2 40 35-77 15-55 (118)
155 1wf0_A TDP-43, TAR DNA-binding 76.8 1.8 6.1E-05 34.9 3.4 35 36-75 4-38 (88)
156 2cq1_A PTB-like protein L; RRM 76.7 3.5 0.00012 34.7 5.3 36 35-75 13-48 (101)
157 2hgm_A HNRPF protein, heteroge 76.0 2.7 9.3E-05 37.0 4.6 36 35-76 40-77 (126)
158 2ad9_A Polypyrimidine tract-bi 75.5 3.3 0.00011 36.2 4.9 37 35-76 29-65 (119)
159 2lmi_A GRSF-1, G-rich sequence 75.3 1.7 5.6E-05 36.7 2.9 29 34-65 8-36 (107)
160 2cq4_A RNA binding motif prote 75.2 2.8 9.7E-05 35.4 4.4 36 37-77 25-60 (114)
161 1x4d_A Matrin 3; structural ge 73.1 3.2 0.00011 35.1 4.2 35 36-75 14-49 (102)
162 2d9o_A DNAJ (HSP40) homolog, s 72.7 4.4 0.00015 34.1 4.9 33 142-174 56-88 (100)
163 1iqt_A AUF1, heterogeneous nuc 72.5 1.4 4.8E-05 34.1 1.6 31 39-74 1-31 (75)
164 2hgl_A HNRPF protein, heteroge 72.3 3 0.0001 37.2 4.0 40 35-77 42-82 (136)
165 1x4b_A Heterogeneous nuclear r 71.1 3.6 0.00012 34.9 4.1 36 37-77 27-62 (116)
166 2jwn_A Embryonic polyadenylate 70.8 3.5 0.00012 35.4 4.0 36 37-77 36-71 (124)
167 2mss_A Protein (musashi1); RNA 69.0 2.3 7.9E-05 32.9 2.2 31 39-74 1-31 (75)
168 1jmt_A Splicing factor U2AF 35 68.0 4.3 0.00015 34.2 3.9 33 142-174 70-104 (104)
169 2nlw_A Eukaryotic translation 67.3 9.2 0.00031 31.8 5.8 79 37-175 15-99 (105)
170 2hgn_A Heterogeneous nuclear r 67.2 2.7 9.1E-05 37.7 2.5 36 35-76 44-79 (139)
171 2krb_A Eukaryotic translation 67.1 7.1 0.00024 30.6 4.8 34 38-73 2-38 (81)
172 3md3_A Nuclear and cytoplasmic 66.7 8.8 0.0003 33.9 5.9 38 35-77 85-122 (166)
173 2dhx_A Poly (ADP-ribose) polym 66.6 6.3 0.00021 33.6 4.5 34 37-73 8-44 (104)
174 1fxl_A Paraneoplastic encephal 66.5 9.7 0.00033 33.6 6.2 55 142-196 46-108 (167)
175 2dit_A HIV TAT specific factor 66.3 6.3 0.00021 33.3 4.6 42 142-183 66-109 (112)
176 2m2b_A RNA-binding protein 10; 65.6 4.3 0.00015 35.4 3.5 27 36-65 22-48 (131)
177 2hzc_A Splicing factor U2AF 65 64.9 6.9 0.00023 30.9 4.4 26 36-64 5-30 (87)
178 2voo_A Lupus LA protein; RNA-b 63.8 7.5 0.00026 36.5 5.1 36 37-77 109-144 (193)
179 3nmr_A Cugbp ELAV-like family 62.4 11 0.00036 33.7 5.7 37 36-77 94-130 (175)
180 1b7f_A Protein (SXL-lethal pro 61.9 12 0.00043 33.0 6.0 55 142-196 47-109 (168)
181 1l3k_A Heterogeneous nuclear r 61.3 9.3 0.00032 34.9 5.2 37 36-77 103-139 (196)
182 2g4b_A Splicing factor U2AF 65 59.4 13 0.00044 33.1 5.7 37 36-77 93-129 (172)
183 3bs9_A Nucleolysin TIA-1 isofo 59.2 6.9 0.00024 30.9 3.4 32 142-173 50-83 (87)
184 2wbr_A GW182, gawky, LD47780P; 57.8 14 0.00046 30.6 4.9 72 35-173 5-78 (89)
185 2cqh_A IGF-II mRNA-binding pro 56.8 7.8 0.00027 31.2 3.4 33 142-174 46-81 (93)
186 2cpf_A RNA binding motif prote 56.8 11 0.00038 30.5 4.4 32 142-173 52-85 (98)
187 1wel_A RNA-binding protein 12; 56.8 9 0.00031 32.9 3.9 28 35-65 23-50 (124)
188 1fjc_A Nucleolin RBD2, protein 56.7 8.9 0.00031 31.0 3.7 33 142-174 55-89 (96)
189 1x5p_A Negative elongation fac 56.6 10 0.00035 30.9 4.1 33 142-174 51-85 (97)
190 2fc9_A NCL protein; structure 56.6 9.1 0.00031 31.3 3.8 27 35-64 13-39 (101)
191 2yh0_A Splicing factor U2AF 65 55.7 17 0.00057 33.2 5.9 77 36-173 113-191 (198)
192 2fc9_A NCL protein; structure 55.6 10 0.00035 31.0 3.9 32 142-173 55-88 (101)
193 2mss_A Protein (musashi1); RNA 55.3 11 0.00037 28.9 3.8 17 142-158 43-59 (75)
194 2diu_A KIAA0430 protein; struc 54.5 12 0.00042 31.4 4.1 41 31-72 3-44 (96)
195 2ytc_A PRE-mRNA-splicing facto 53.0 11 0.00039 29.5 3.7 19 142-160 50-68 (85)
196 2cqh_A IGF-II mRNA-binding pro 51.7 12 0.00041 30.0 3.7 29 35-66 6-34 (93)
197 2ywk_A Putative RNA-binding pr 51.0 12 0.00041 30.1 3.6 32 142-173 59-92 (95)
198 2e5i_A Heterogeneous nuclear r 49.6 21 0.00073 31.1 5.2 36 142-177 64-103 (124)
199 3v4m_A Splicing factor U2AF 65 49.1 10 0.00035 31.9 2.9 33 142-174 61-95 (105)
200 3ulh_A THO complex subunit 4; 48.3 13 0.00046 30.6 3.5 32 142-173 72-105 (107)
201 1uaw_A Mouse-musashi-1; RNP-ty 48.3 11 0.00039 28.8 2.9 32 142-173 44-76 (77)
202 2lcw_A RNA-binding protein FUS 53.9 3.8 0.00013 34.8 0.0 28 35-65 5-32 (116)
203 2bz2_A Negative elongation fac 48.0 20 0.0007 30.7 4.8 34 142-175 75-110 (121)
204 1fjc_A Nucleolin RBD2, protein 47.8 15 0.00052 29.6 3.7 27 35-64 14-40 (96)
205 2krb_A Eukaryotic translation 47.8 14 0.00046 28.9 3.3 21 142-162 49-69 (81)
206 3ucg_A Polyadenylate-binding p 47.6 17 0.00058 28.6 4.0 31 142-173 50-82 (89)
207 1wf0_A TDP-43, TAR DNA-binding 47.2 6.6 0.00023 31.3 1.4 34 142-175 44-77 (88)
208 3ue2_A Poly(U)-binding-splicin 47.2 8.7 0.0003 33.2 2.2 86 36-175 19-108 (118)
209 1iqt_A AUF1, heterogeneous nuc 46.1 12 0.00043 28.4 2.8 18 142-159 43-60 (75)
210 2j8a_A Histone-lysine N-methyl 44.6 18 0.00062 32.2 3.9 35 39-78 4-42 (136)
211 2do0_A HnRNP M, heterogeneous 44.4 23 0.00078 29.5 4.4 21 142-162 58-78 (114)
212 3pgw_A U1-A; protein-RNA compl 44.3 24 0.00081 34.5 5.2 36 35-75 205-240 (282)
213 2dgw_A Probable RNA-binding pr 42.5 17 0.0006 28.9 3.3 31 142-173 52-84 (91)
214 3s6e_A RNA-binding protein 39; 41.8 13 0.00045 31.9 2.5 33 142-174 57-91 (114)
215 3s7r_A Heterogeneous nuclear r 41.4 15 0.00052 28.9 2.7 18 142-159 55-72 (87)
216 3r27_A HnRNP L, heterogeneous 41.1 24 0.00083 29.6 4.0 21 142-162 59-79 (100)
217 3zzy_A Polypyrimidine tract-bi 40.8 19 0.00067 31.7 3.5 35 142-176 68-106 (130)
218 1x4e_A RNA binding motif, sing 39.6 20 0.00069 28.0 3.1 21 142-162 49-69 (85)
219 1x4d_A Matrin 3; structural ge 39.0 20 0.00069 30.0 3.2 34 142-175 54-91 (102)
220 3d2w_A TAR DNA-binding protein 38.8 16 0.00056 29.3 2.5 32 142-173 50-81 (89)
221 2cjk_A Nuclear polyadenylated 38.2 14 0.00047 32.7 2.2 35 37-76 87-121 (167)
222 1fje_B Nucleolin RBD12, protei 38.0 36 0.0012 30.3 5.0 55 142-197 56-120 (175)
223 3egn_A RNA-binding protein 40; 37.9 23 0.00079 30.9 3.6 32 142-173 94-127 (143)
224 2cq2_A Hypothetical protein LO 37.8 21 0.00072 30.7 3.1 22 142-163 65-86 (114)
225 1sjq_A Polypyrimidine tract-bi 37.5 29 0.00098 29.4 3.9 33 142-174 54-90 (105)
226 2dh8_A DAZ-associated protein 37.5 21 0.00071 29.3 3.0 18 142-159 60-77 (105)
227 2jwn_A Embryonic polyadenylate 36.9 33 0.0011 29.0 4.3 32 142-174 80-113 (124)
228 2hzc_A Splicing factor U2AF 65 36.6 26 0.00089 27.4 3.4 19 142-161 55-73 (87)
229 2ad9_A Polypyrimidine tract-bi 34.8 26 0.00089 30.3 3.3 32 142-173 69-104 (119)
230 2cq1_A PTB-like protein L; RRM 34.7 26 0.00088 29.1 3.2 33 142-174 53-89 (101)
231 1wez_A HnRNP H', FTP-3, hetero 34.1 31 0.0011 28.5 3.6 18 142-159 57-74 (102)
232 1x4b_A Heterogeneous nuclear r 33.3 31 0.001 28.8 3.5 31 142-173 71-103 (116)
233 1wg5_A Heterogeneous nuclear r 32.8 39 0.0013 27.7 4.0 38 142-181 59-98 (104)
234 1wel_A RNA-binding protein 12; 32.5 28 0.00096 29.6 3.1 31 142-173 69-101 (124)
235 3egn_A RNA-binding protein 40; 31.5 35 0.0012 29.7 3.7 27 36-65 44-70 (143)
236 2ghp_A U4/U6 snRNA-associated 31.0 32 0.0011 33.7 3.7 38 35-77 208-246 (292)
237 2rdd_B UPF0092 membrane protei 29.5 26 0.00089 23.8 1.8 18 404-421 4-21 (37)
238 3tyt_A Heterogeneous nuclear r 29.3 28 0.00096 32.7 2.8 27 36-65 122-148 (205)
239 2dnr_A Synaptojanin-1; RRM dom 28.9 38 0.0013 28.0 3.1 30 143-173 52-83 (91)
240 1s79_A Lupus LA protein; RRM, 28.8 33 0.0011 28.5 2.8 17 142-158 54-70 (103)
241 2m2b_A RNA-binding protein 10; 28.4 27 0.00091 30.1 2.3 21 142-163 69-89 (131)
242 2cq4_A RNA binding motif prote 27.3 25 0.00086 29.3 1.8 19 142-161 69-87 (114)
243 2cpy_A RNA-binding protein 12; 26.7 32 0.0011 28.8 2.5 18 142-159 59-76 (114)
244 2db1_A Heterogeneous nuclear r 25.6 39 0.0013 28.6 2.8 17 142-158 63-79 (118)
245 2lmi_A GRSF-1, G-rich sequence 25.5 39 0.0013 27.9 2.7 17 142-158 57-73 (107)
246 2lcw_A RNA-binding protein FUS 30.7 15 0.00053 30.8 0.0 32 142-173 59-92 (116)
247 3zzy_A Polypyrimidine tract-bi 24.7 91 0.0031 27.3 5.0 36 38-78 29-64 (130)
248 2dnn_A RNA-binding protein 12; 23.8 45 0.0016 28.0 2.8 17 142-158 58-74 (109)
249 2rs2_A Musashi-1, RNA-binding 23.5 45 0.0015 27.7 2.7 32 142-173 69-101 (109)
250 1wey_A Calcipressin 1; structu 22.7 80 0.0027 26.7 4.0 40 39-78 7-55 (104)
251 2dit_A HIV TAT specific factor 22.4 92 0.0032 25.7 4.6 37 36-74 14-58 (112)
252 2kn4_A Immunoglobulin G-bindin 21.6 1.5E+02 0.0053 25.7 6.1 57 142-198 15-92 (158)
253 2hgl_A HNRPF protein, heteroge 21.0 49 0.0017 29.0 2.6 31 142-173 90-122 (136)
254 2cq2_A Hypothetical protein LO 21.0 83 0.0029 26.8 3.9 35 36-75 24-60 (114)
255 2e5i_A Heterogeneous nuclear r 20.8 1.1E+02 0.0038 26.3 4.8 33 40-77 28-60 (124)
256 2hgm_A HNRPF protein, heteroge 20.0 47 0.0016 28.8 2.2 18 142-159 86-103 (126)
No 1
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.20 E-value=0.021 Score=46.96 Aligned_cols=72 Identities=15% Similarity=0.180 Sum_probs=51.6
Q ss_pred CCCCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcc
Q 048588 33 RQPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSM 112 (615)
Q Consensus 33 ~~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~ 112 (615)
.....++|.|.|||.+.++ +.|+++|+.+. .+.++.+.+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G--~v~~~~~~~------------------------------------ 43 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTS---QELRSLFERRG--RVIECDVVK------------------------------------ 43 (90)
T ss_dssp SSCCSCCEEEESCCTTCCH---HHHHHHHHHHS--CEEEEEECS------------------------------------
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHHcCC--CEEEEEEEC------------------------------------
Confidence 4456789999999998765 77888887763 355554320
Q ss_pred cccccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 113 KTGFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 113 r~g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
| .|||+|.+..+|..|.+.+... +...+.++.|
T Consensus 44 --------~--------------------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 44 --------D--------------------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp --------S--------------------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred --------C--------------------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 0 7999999999999998876543 3345566665
No 2
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.10 E-value=0.058 Score=44.55 Aligned_cols=82 Identities=9% Similarity=0.054 Sum_probs=56.5
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKT 114 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~ 114 (615)
+...||.|.|||.+.++ +.|+++|+.. +.+.++.+.+|-. ..++
T Consensus 3 ~~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~~~---------------------------~~~~---- 46 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITE---DMLRGIFEPF--GKIDNIVLMKDSD---------------------------TGRS---- 46 (95)
T ss_dssp SCCCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEECCSS---------------------------SCCC----
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCEeEEEEeecCC---------------------------CCce----
Confidence 35579999999998765 7899999876 4577776654320 0000
Q ss_pred cccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCCCC
Q 048588 115 GFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPEPR 177 (615)
Q Consensus 115 g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APeP~ 177 (615)
.=.|||+|++..+|..|.+.+... +...+.|+.|.++.
T Consensus 47 -------------------------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 86 (95)
T 2dnz_A 47 -------------------------KGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERL 86 (95)
T ss_dssp -------------------------CSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCC
T ss_pred -------------------------eeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccccc
Confidence 017999999999999999876543 33556777775543
No 3
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=96.07 E-value=0.018 Score=52.36 Aligned_cols=38 Identities=11% Similarity=0.207 Sum_probs=30.3
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecC
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNA 78 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~ 78 (615)
+..||.|+|||++.++ +.|+++|+.. |.+.++.+..|.
T Consensus 1 s~~~l~v~nlp~~~~~---~~l~~~f~~~--G~i~~v~~~~~~ 38 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQ---EEFRSLFGSI--GEIESCKLVRDK 38 (167)
T ss_dssp CCSEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEECT
T ss_pred CcceEEEcCCCCCCCH---HHHHHHHHhc--CCeEEEEEEeCC
Confidence 3569999999998765 7889999876 457888887765
No 4
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=96.03 E-value=0.038 Score=46.70 Aligned_cols=77 Identities=12% Similarity=0.153 Sum_probs=54.4
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccc
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTG 115 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~g 115 (615)
+..+|.|.|||.+.++ +.|+++|+.. |.+.++.+.+|-. ..++
T Consensus 18 ~gt~lfV~nLp~~~te---~~L~~~F~~~--G~I~~v~i~~d~~---------------------------tg~~----- 60 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQ---DELRSLFSSI--GEVESAKLIRDKV---------------------------AGHS----- 60 (99)
T ss_dssp CCSEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEECSS---------------------------SCCE-----
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEeEeeecCC---------------------------CCcc-----
Confidence 3458999999998775 7899999876 4677887775420 0000
Q ss_pred ccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 116 FLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 116 ~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
.=.|||+|.+..+|..|.+.+... +...+.|+.|
T Consensus 61 ------------------------kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 61 ------------------------LGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp ------------------------EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ------------------------cccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 117999999999999998876543 2345667666
No 5
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=96.01 E-value=0.05 Score=46.69 Aligned_cols=84 Identities=12% Similarity=0.145 Sum_probs=59.2
Q ss_pred CCCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccc
Q 048588 34 QPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMK 113 (615)
Q Consensus 34 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r 113 (615)
.+..+||.|+|||.+.++ +.|+++|+.. |.+.++.+.+|-. .
T Consensus 23 ~~~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~~~---------------------------~------ 64 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITE---DMLRGIFEPF--GRIESIQLMMDSE---------------------------T------ 64 (108)
T ss_dssp CSSCEEEEEECCCSSCCH---HHHHHHHTTT--SCEEEEEEEEETT---------------------------T------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEcCC---------------------------C------
Confidence 446689999999998765 7899999876 4577777664420 0
Q ss_pred ccccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCCCCc
Q 048588 114 TGFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPEPRD 178 (615)
Q Consensus 114 ~g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APeP~D 178 (615)
| ...=.|||+|.+..+|..|.+.+... +...+.++.|-+..|
T Consensus 65 -------g----------------~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k~d 108 (108)
T 2jrs_A 65 -------G----------------RSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTD 108 (108)
T ss_dssp -------T----------------EEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSSCC
T ss_pred -------C----------------ccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccCCC
Confidence 0 00117999999999999999876543 345677887766554
No 6
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=96.00 E-value=0.013 Score=49.38 Aligned_cols=80 Identities=15% Similarity=0.132 Sum_probs=53.0
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKT 114 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~ 114 (615)
.+.-||.|+|||++.++ +.|+++|+.+.+-.+.++.+++|- .+.+.
T Consensus 7 ~~m~tlfV~nL~~~~te---e~L~~~F~~~G~i~v~~v~i~~d~-------------------------------~tg~s 52 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVV---DSIMTALSPYASLAVNNIRLIKDK-------------------------------QTQQN 52 (95)
T ss_dssp CCCCEEEEESCCTTCCH---HHHHHHSTTTCCCCGGGEECCCCS-------------------------------SSSSC
T ss_pred CccCEEEEeCCCCcCCH---HHHHHHHHhhCCccEEEEEEEecC-------------------------------CCCCC
Confidence 45569999999998775 889999987754344444433221 01000
Q ss_pred cccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCCC------CCcceeecC
Q 048588 115 GFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTRN------PTLWLTDWA 173 (615)
Q Consensus 115 g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~~------p~~~~v~~A 173 (615)
+=.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 53 -------------------------rG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~A 92 (95)
T 2lkz_A 53 -------------------------RGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFA 92 (95)
T ss_dssp -------------------------SSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEEC
T ss_pred -------------------------ceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEc
Confidence 0179999999999999998876543 234555555
No 7
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.97 E-value=0.028 Score=46.40 Aligned_cols=72 Identities=14% Similarity=0.093 Sum_probs=50.5
Q ss_pred CCCCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcc
Q 048588 33 RQPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSM 112 (615)
Q Consensus 33 ~~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~ 112 (615)
......+|.|.|||.+.++ +.|+++|+.+. .+.++.+.+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~---~~l~~~F~~~G--~v~~v~~~~------------------------------------ 44 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTN---QELRAKFEEYG--PVIECDIVK------------------------------------ 44 (92)
T ss_dssp CCCSSEEEEEESCCSSCCH---HHHHHHHHTTS--CCCEEEECS------------------------------------
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CeEEEEEEC------------------------------------
Confidence 3456689999999998765 78889997763 344443320
Q ss_pred cccccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 113 KTGFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 113 r~g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
| .|||+|++..+|..|.+.+... +...+.++.|
T Consensus 45 --------~--------------------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 45 --------D--------------------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp --------S--------------------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred --------C--------------------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 0 7999999999999998765433 2345566665
No 8
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=95.75 E-value=0.058 Score=46.57 Aligned_cols=80 Identities=10% Similarity=0.035 Sum_probs=57.9
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKT 114 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~ 114 (615)
+...||.|.|+|.+.++ +.|+++|+.+ |.+.++.+.+|-. +.+
T Consensus 4 ~p~~~lfV~nL~~~~te---~~L~~~F~~~--G~i~~v~i~~d~~-------------------------------tg~- 46 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRE---TFLKDMCRKY--GEVEEVEILLHPR-------------------------------TRK- 46 (110)
T ss_dssp SCCCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEEECTT-------------------------------TCC-
T ss_pred CCCcEEEEECCCCCCCH---HHHHHHHHhc--CCeeEEEEEECCC-------------------------------CCc-
Confidence 45679999999998775 7899999876 5688888876531 000
Q ss_pred cccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCC
Q 048588 115 GFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPE 175 (615)
Q Consensus 115 g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APe 175 (615)
.+=.|||+|++..+|..|.+.+... ....+.|+.|+.
T Consensus 47 ------------------------~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 47 ------------------------HLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp ------------------------EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred ------------------------eeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 0117999999999999999877644 334566777753
No 9
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=95.74 E-value=0.027 Score=51.33 Aligned_cols=38 Identities=13% Similarity=0.214 Sum_probs=29.8
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecC
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNA 78 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~ 78 (615)
+..||.|+|||++.++ +.|+++|+.. |.+.++.+..|.
T Consensus 2 ~~~~l~v~nlp~~~~~---~~l~~~f~~~--G~i~~v~i~~~~ 39 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTD---RELYALFRAI--GPINTCRIMRDY 39 (168)
T ss_dssp CCSEEEEECCCTTCCH---HHHHHHHHTT--SCEEEEECCEET
T ss_pred CccEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEEEeC
Confidence 4579999999998765 7899999876 457777777664
No 10
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.70 E-value=0.059 Score=45.05 Aligned_cols=73 Identities=19% Similarity=0.178 Sum_probs=53.0
Q ss_pred CCCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccc
Q 048588 34 QPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMK 113 (615)
Q Consensus 34 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r 113 (615)
.....||.|.|||.+.++ +.|+++|+.+.++.+.++.+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~g~g~v~~~~~~-------------------------------------- 50 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSE---EMIEKEFNNIKPGAVERVKKI-------------------------------------- 50 (99)
T ss_dssp SSCCCEEEEESCCTTCCH---HHHHHHHHTTSTTCEEEEEEC--------------------------------------
T ss_pred cCCcCEEEEeCCCCCCCH---HHHHHHHHhcCCcceEEEEEe--------------------------------------
Confidence 345679999999998765 789999988766666554310
Q ss_pred ccccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 114 TGFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 114 ~g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
.| .|||+|.+..+|..|.+.+... +...+.++.|
T Consensus 51 ------~g--------------------~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 51 ------RD--------------------YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp ------SS--------------------EEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred ------CC--------------------eEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 01 7999999999999998866543 2345566665
No 11
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.64 E-value=0.13 Score=42.94 Aligned_cols=81 Identities=12% Similarity=0.164 Sum_probs=54.9
Q ss_pred CCCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccc
Q 048588 34 QPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMK 113 (615)
Q Consensus 34 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r 113 (615)
.....+|.|.|||.+.++ +.|+++|+.+ +.+.++.+.+|-. ..++
T Consensus 7 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~~---------------------------~~~~--- 51 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGE---TELREYFKKF--GVVTEVVMIYDAE---------------------------KQRP--- 51 (99)
T ss_dssp CSSCCEEEEESCCSSCCH---HHHHHHHSSS--SCEEEEEECCCTT---------------------------TCSC---
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEeCCC---------------------------CCCC---
Confidence 346689999999998765 7899999876 4577776654320 0000
Q ss_pred ccccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCCC
Q 048588 114 TGFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPEP 176 (615)
Q Consensus 114 ~g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APeP 176 (615)
.=.|||+|.+..+|..|.+ +... +...+.|+.|-.+
T Consensus 52 --------------------------~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~ 89 (99)
T 2dgs_A 52 --------------------------RGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPR 89 (99)
T ss_dssp --------------------------CSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCC
T ss_pred --------------------------CceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCC
Confidence 0179999999999999988 4322 2345667666443
No 12
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=95.63 E-value=0.066 Score=48.94 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=30.8
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecC
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNA 78 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~ 78 (615)
+.+||.|+|||.+.++ +.|+++|+.. |.+.++.+.+|.
T Consensus 2 ~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~~ 39 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSE---KDLRELFEQY--GAVYEINVLRDR 39 (175)
T ss_dssp CCEEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEEEC
T ss_pred CceEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEecC
Confidence 5679999999998775 7899999876 458888887764
No 13
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.61 E-value=0.059 Score=45.23 Aligned_cols=79 Identities=19% Similarity=0.180 Sum_probs=53.3
Q ss_pred CCCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccc
Q 048588 34 QPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMK 113 (615)
Q Consensus 34 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r 113 (615)
..+.+||.|.|||.+.++ +.|+++|+.+. .+.++.+..|- .+.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~---~~l~~~f~~~G--~i~~v~i~~~~-------------------------------~~~~ 52 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNE---QSLEQVFSKYG--QISEVVVVKDR-------------------------------ETQR 52 (102)
T ss_dssp CCCCSEEEEESCCTTCCH---HHHHHHHHHHS--CCCEEEECCCS-------------------------------SSCS
T ss_pred CCCCCEEEEECCCCCCCH---HHHHHHHHhcC--CeEEEEEEeCC-------------------------------CCCC
Confidence 456789999999998765 77888887763 45566554321 0000
Q ss_pred ccccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 114 TGFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 114 ~g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
..=.|||+|.+..+|..|.+.+... +...+.|+.|
T Consensus 53 -------------------------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 53 -------------------------SRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp -------------------------CCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred -------------------------cccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 0117999999999999999776543 3345666665
No 14
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.57 E-value=0.067 Score=44.09 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=29.2
Q ss_pred CCCCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEe
Q 048588 33 RQPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVS 76 (615)
Q Consensus 33 ~~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~ 76 (615)
..++..+|.|+|||.+.++ +.|+++|+.+ +.+.++.+..
T Consensus 12 ~~~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~ 50 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTN---NDLYRIFSKY--GKVVKVTIMK 50 (94)
T ss_dssp CCCCTTSEEEESCCTTSCH---HHHHHHTTTT--SCEEEEEECC
T ss_pred CCCCCCEEEEECCCCCCCH---HHHHHHHHhc--CCeEEEEEEe
Confidence 3456789999999998765 7899999876 3566666553
No 15
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.54 E-value=0.1 Score=43.64 Aligned_cols=79 Identities=10% Similarity=0.183 Sum_probs=54.9
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKT 114 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~ 114 (615)
.+..+|.|+|||.+.++ +.|+++|+.+ |.+.++.+..|- +
T Consensus 15 ~~~~~l~v~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~--------------------------------~--- 54 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTK---EELEEICKAH--GTVKDLRLVTNR--------------------------------A--- 54 (100)
T ss_dssp CCCSCEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEEECT--------------------------------T---
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCeEEEEEEECC--------------------------------C---
Confidence 45679999999998765 7899999876 457777665431 0
Q ss_pred cccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCC
Q 048588 115 GFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPE 175 (615)
Q Consensus 115 g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APe 175 (615)
|+ ..=.|||+|++..+|..|.+.+... +...+.++.|-.
T Consensus 55 ------g~----------------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 95 (100)
T 2do4_A 55 ------GK----------------PKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS 95 (100)
T ss_dssp ------SC----------------EEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred ------CC----------------EEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 00 0117999999999999998776532 344567776633
No 16
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=95.52 E-value=0.052 Score=45.86 Aligned_cols=72 Identities=18% Similarity=0.169 Sum_probs=50.1
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKT 114 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~ 114 (615)
....+|.|.|||.+.++ +.|+++|+.+. .+.++.+.
T Consensus 9 ~~~~~l~V~nl~~~~t~---~~l~~~F~~~G--~i~~v~~~--------------------------------------- 44 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTE---EILEKAFSQFG--KLERVKKL--------------------------------------- 44 (103)
T ss_dssp CCCCCEEEECCCTTCCH---HHHHHHHHHHS--CEEEEEEC---------------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CEEEEEEE---------------------------------------
Confidence 34579999999998765 77888887763 45544321
Q ss_pred cccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCC
Q 048588 115 GFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPE 175 (615)
Q Consensus 115 g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APe 175 (615)
.| .|||+|.+..+|..|.+.+... +...+.|+.|-.
T Consensus 45 -----~~--------------------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 45 -----KD--------------------YAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp -----SS--------------------CEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred -----CC--------------------EEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 00 6999999999999998876543 234556666543
No 17
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=95.50 E-value=0.027 Score=51.03 Aligned_cols=36 Identities=14% Similarity=0.278 Sum_probs=29.5
Q ss_pred ceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecC
Q 048588 38 FTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNA 78 (615)
Q Consensus 38 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~ 78 (615)
+||.|+|||.+.++ +.|+++|+.. |.+.++.+.+|-
T Consensus 1 R~l~V~nlp~~~t~---~~l~~~f~~~--G~i~~v~i~~~~ 36 (166)
T 3md3_A 1 RVLYVGNLDKAITE---DILKQYFQVG--GPIANIKIMIDK 36 (166)
T ss_dssp CEEEEEEEETTCCH---HHHHHHHGGG--SCEEEEEEECCC
T ss_pred CEEEECCCCCcCCH---HHHHHHHHhc--CCeEEEEEEECC
Confidence 58999999998775 7899999877 458888887665
No 18
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=95.48 E-value=0.066 Score=43.16 Aligned_cols=37 Identities=11% Similarity=0.168 Sum_probs=28.3
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEe
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVS 76 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~ 76 (615)
++..+|.|+|+|.+.++ +.|+++|+.. |.+.++.+.+
T Consensus 5 ~~~~~l~V~nl~~~~~~---~~l~~~f~~~--G~i~~v~i~~ 41 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDD---KVLHAAFIPF--GDITDIQIPL 41 (85)
T ss_dssp CCSSEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEECCE
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHhcc--CCEEEEEEEE
Confidence 46679999999998765 7899999876 3566665543
No 19
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=95.47 E-value=0.14 Score=43.10 Aligned_cols=79 Identities=15% Similarity=0.148 Sum_probs=55.2
Q ss_pred CCCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccc
Q 048588 34 QPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMK 113 (615)
Q Consensus 34 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r 113 (615)
.+...||.|.|||.+.++ +.|+++|+.+. .+.++.+..|- +.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~---~~l~~~F~~~G--~i~~v~i~~~~--------------------------------~g~ 54 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSE---EDVLRLFQPFG--VIDECTVLRGP--------------------------------DGS 54 (105)
T ss_dssp CCCCCEEEEESCCTTCCH---HHHHHHHTTTS--CEEEEEEEECS--------------------------------SSC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CeEEEEEEECC--------------------------------CCC
Confidence 345689999999998765 78999998763 47676665331 000
Q ss_pred ccccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCCC--C---CcceeecCC
Q 048588 114 TGFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTRN--P---TLWLTDWAP 174 (615)
Q Consensus 114 ~g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~~--p---~~~~v~~AP 174 (615)
..=.|||+|.+..+|..|.+.+.... . ..+.|+.|-
T Consensus 55 -------------------------~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~ 95 (105)
T 2dnh_A 55 -------------------------SKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFAD 95 (105)
T ss_dssp -------------------------EEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESC
T ss_pred -------------------------cCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECc
Confidence 01179999999999999998765432 2 456777663
No 20
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=95.41 E-value=0.085 Score=45.38 Aligned_cols=79 Identities=13% Similarity=0.193 Sum_probs=53.9
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKT 114 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~ 114 (615)
+...||.|.|||.+.++ +.|+++|+.+. .+.++.+.+|-. +
T Consensus 23 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~G--~i~~v~i~~~~~-------------------------------~--- 63 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGD---QDLLQMFMPFG--NVVSAKVFIDKQ-------------------------------T--- 63 (115)
T ss_dssp STTCCEEEESCCSSCCH---HHHHHHHGGGS--CCSEEEEEECSS-------------------------------S---
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHhcC--CeEEEEEEECCC-------------------------------C---
Confidence 45689999999998765 78999998763 466666654320 0
Q ss_pred cccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecCC
Q 048588 115 GFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAP 174 (615)
Q Consensus 115 g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~AP 174 (615)
|+ ..=.|||+|.+..+|..|.+.+... +...+.|+.|-
T Consensus 64 ------g~----------------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 64 ------NL----------------SKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103 (115)
T ss_dssp ------CS----------------EEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred ------CC----------------cCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence 00 0118999999999999998776543 23445666653
No 21
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=95.38 E-value=0.11 Score=41.54 Aligned_cols=76 Identities=21% Similarity=0.338 Sum_probs=53.1
Q ss_pred ceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccc
Q 048588 38 FTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTGFL 117 (615)
Q Consensus 38 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~g~~ 117 (615)
+||.|.|||.+.++ +.|+++|+.. |.+.++.+.+|.. ..+
T Consensus 2 ~~l~V~nlp~~~t~---~~l~~~f~~~--G~i~~~~i~~~~~---------------------------~~~-------- 41 (83)
T 3md1_A 2 FNLFVGDLNVNVDD---ETLRNAFKDF--PSYLSGHVMWDMQ---------------------------TGS-------- 41 (83)
T ss_dssp EEEEEECCCTTCCH---HHHHHHHTTS--TTEEEEEEEECTT---------------------------TCC--------
T ss_pred eEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEEEcCC---------------------------CCC--------
Confidence 69999999998765 7889999876 4577777665430 000
Q ss_pred CCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecCC
Q 048588 118 GLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAP 174 (615)
Q Consensus 118 g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~AP 174 (615)
..=.|||+|.+..+|..|.+.+... +...+.++.|-
T Consensus 42 ---------------------~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 42 ---------------------SRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp ---------------------EEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ---------------------ccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 0117999999999999998876543 23345666653
No 22
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=95.34 E-value=0.042 Score=45.25 Aligned_cols=80 Identities=8% Similarity=-0.031 Sum_probs=50.9
Q ss_pred ceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccc
Q 048588 38 FTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTGFL 117 (615)
Q Consensus 38 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~g~~ 117 (615)
+||.|.|+|.+.++ +.|+++|+...+..+.++.+.+|-. +.+
T Consensus 2 ~~l~V~nL~~~~t~---~~l~~~F~~~G~~~v~~v~i~~~~~-------------------------------~g~---- 43 (90)
T 3p5t_L 2 IALYIGNLTWWTTD---EDLTEAVHSLGVNDILEIKFFENRA-------------------------------NGQ---- 43 (90)
T ss_dssp --CEEESCCTTCCH---HHHHHHHHTTTCCCCCCEEEEECTT-------------------------------TCC----
T ss_pred eEEEEeCCCCCCCH---HHHHHHHHHhCCCceEEEEEEecCC-------------------------------CCc----
Confidence 68999999998765 7889999877533566666664420 000
Q ss_pred CCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCCC
Q 048588 118 GLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPEP 176 (615)
Q Consensus 118 g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APeP 176 (615)
.+=.|||+|.+..+|..|.+.+... +...+.|+.|..|
T Consensus 44 ---------------------~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~ 83 (90)
T 3p5t_L 44 ---------------------SKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKL 83 (90)
T ss_dssp ---------------------EEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC---
T ss_pred ---------------------cCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCC
Confidence 0117999999999999998876543 3345666666444
No 23
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.33 E-value=0.12 Score=43.58 Aligned_cols=81 Identities=15% Similarity=0.127 Sum_probs=55.0
Q ss_pred CCCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccc
Q 048588 34 QPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMK 113 (615)
Q Consensus 34 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r 113 (615)
....+||.|.|||.+.++ +.|+++|+.+ +.+.++.+.+|-. +.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~~-------------------------------~~~ 55 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSE---PLLWELFLQA--GPVVNTHMPKDRV-------------------------------TGQ 55 (105)
T ss_dssp CCTTTEEEEECCCTTCCH---HHHHHHHHTT--SCEEEEECCBCSS-------------------------------SCS
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecCC-------------------------------CCc
Confidence 346689999999998765 7889999876 4566665543320 000
Q ss_pred ccccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCC
Q 048588 114 TGFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPE 175 (615)
Q Consensus 114 ~g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APe 175 (615)
..=.|||+|.+..+|..|.+.+... +...+.++.|-.
T Consensus 56 -------------------------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 94 (105)
T 1x5u_A 56 -------------------------HQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASA 94 (105)
T ss_dssp -------------------------BCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTT
T ss_pred -------------------------CCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 0016999999999999999876543 334567776643
No 24
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=95.32 E-value=0.1 Score=44.00 Aligned_cols=81 Identities=14% Similarity=0.146 Sum_probs=54.4
Q ss_pred CCCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccc
Q 048588 34 QPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMK 113 (615)
Q Consensus 34 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r 113 (615)
.....+|.|.|||.+.++ +.|+++|+.+. .+.++.+.+|.. +.+
T Consensus 10 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G--~i~~v~i~~~~~-------------------------------~g~ 53 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDE---KDLKPLFEEFG--KIYELTVLKDRF-------------------------------TGM 53 (106)
T ss_dssp CTTCEEEEEESCCTTCCH---HHHHHHHHHHS--CCCEEECCCCSS-------------------------------SCS
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CeeEEEEEecCC-------------------------------CCC
Confidence 346689999999998765 77888888763 455555443210 000
Q ss_pred ccccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC-----CCCcceeecCCC
Q 048588 114 TGFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR-----NPTLWLTDWAPE 175 (615)
Q Consensus 114 ~g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~-----~p~~~~v~~APe 175 (615)
..=.|||+|.+..+|..|.+.+... ....+.++.|-.
T Consensus 54 -------------------------~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 95 (106)
T 2dgp_A 54 -------------------------HKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADS 95 (106)
T ss_dssp -------------------------CCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCC
T ss_pred -------------------------cceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCc
Confidence 0017999999999999999876543 335567777643
No 25
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=95.29 E-value=0.15 Score=41.70 Aligned_cols=79 Identities=15% Similarity=0.124 Sum_probs=54.1
Q ss_pred CCCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccc
Q 048588 34 QPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMK 113 (615)
Q Consensus 34 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r 113 (615)
.+..++|.|.|||.+.++ +.|+++|+.+ +.+.++.+.++.+ +
T Consensus 5 ~~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~v~~~~i~~~~g-----------------------------~---- 46 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTW---KMLKDKFNEC--GHVLYADIKMENG-----------------------------K---- 46 (92)
T ss_dssp SSSCCEEEECSCCTTCCH---HHHHHHHHTT--SCEEEEEEEESSS-----------------------------C----
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEccCC-----------------------------C----
Confidence 356789999999998765 7889999876 4566665543210 0
Q ss_pred ccccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCC
Q 048588 114 TGFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPE 175 (615)
Q Consensus 114 ~g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APe 175 (615)
..-.|||+|.+..+|..|.+.+... +...+.++.|-.
T Consensus 47 -------------------------~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 47 -------------------------SKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp -------------------------EEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred -------------------------cceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 0117999999999999998876543 234556666543
No 26
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.29 E-value=0.12 Score=42.92 Aligned_cols=81 Identities=15% Similarity=0.069 Sum_probs=54.3
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKT 114 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~ 114 (615)
.+..||.|.|||.+.++ +.|+++|+.+ |.+.++.+.+|- .+.+
T Consensus 6 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~-------------------------------~~~~- 48 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSE---EDLEKLFSAY--GPLSELHYPIDS-------------------------------LTKK- 48 (99)
T ss_dssp CSCEEEEEECCCTTCCH---HHHHHHHHTT--SCEEEEECCCCT-------------------------------TTCC-
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEeEEEEEecC-------------------------------CCCC-
Confidence 45679999999998765 7889999876 356665544322 0000
Q ss_pred cccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCCC
Q 048588 115 GFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPEP 176 (615)
Q Consensus 115 g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APeP 176 (615)
..=.|||+|.+..+|..|.+.+... +...+.|+.|-.+
T Consensus 49 ------------------------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 88 (99)
T 1whw_A 49 ------------------------PKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIK 88 (99)
T ss_dssp ------------------------CCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCC
T ss_pred ------------------------cCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 0017999999999999998766543 3345667666443
No 27
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.28 E-value=0.13 Score=43.18 Aligned_cols=79 Identities=16% Similarity=0.196 Sum_probs=53.8
Q ss_pred CCCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccc
Q 048588 34 QPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMK 113 (615)
Q Consensus 34 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r 113 (615)
....+||.|.|||.+.++ +.|+++|+..+ +.+.++.+.+|. +.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~~-G~v~~v~i~~~~--------------------------------~g~ 49 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDD---GMLYEFFVKVY-PSCRGGKVVLDQ--------------------------------TGV 49 (104)
T ss_dssp SSCCCCEEEECCCTTCCH---HHHHHHHHHHC-TTEEEEEEEECT--------------------------------TCC
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHHhC-CCeEEEEEEECC--------------------------------CCC
Confidence 346689999999998765 78899998722 457777666431 000
Q ss_pred ccccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCCC---CCcceeecC
Q 048588 114 TGFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTRN---PTLWLTDWA 173 (615)
Q Consensus 114 ~g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~~---p~~~~v~~A 173 (615)
..=.|||+|.+..+|..|.+.+.... ...+.++.|
T Consensus 50 -------------------------~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a 87 (104)
T 2dhg_A 50 -------------------------SKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 87 (104)
T ss_dssp -------------------------EEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred -------------------------ccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence 01179999999999999988665432 334556555
No 28
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=95.27 E-value=0.14 Score=43.88 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=30.2
Q ss_pred CCCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 34 QPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 34 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
..+.+||.|.|||.+.++ +.|+++|+.+ |.+.++.+.+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 50 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITT---EDIKAAFAPF--GRISDARVVKD 50 (115)
T ss_dssp STTCEEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEc
Confidence 346689999999998765 7899999877 45777776644
No 29
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.19 E-value=0.11 Score=42.77 Aligned_cols=38 Identities=11% Similarity=0.010 Sum_probs=29.2
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
+...+|.|.|||.+.++ +.|+++|+.+ +.+.++.+.+|
T Consensus 13 ~~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~ 50 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTE---RDLREVFSKY--GPIADVSIVYD 50 (95)
T ss_dssp CGGGCEEEESCCSSCCH---HHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHHhc--CCeeEEEEEEc
Confidence 45689999999998765 7889999876 45777776643
No 30
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=95.11 E-value=0.17 Score=42.59 Aligned_cols=78 Identities=12% Similarity=0.131 Sum_probs=54.0
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKT 114 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~ 114 (615)
.+..||.|.|||.+.++ +.|+++|+.+ |.+.++.+..|-. +.+
T Consensus 21 ~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~i~~v~i~~~~~-------------------------------~~~- 63 (106)
T 1p27_B 21 VEGWILFVTGVHEEATE---EDIHDKFAEY--GEIKNIHLNLDRR-------------------------------TGY- 63 (106)
T ss_dssp TTBEEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEEEECTT-------------------------------TSS-
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHhcc--CCeEEEEEEecCC-------------------------------CCc-
Confidence 35579999999998765 7899999877 4677777664420 000
Q ss_pred cccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 115 GFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 115 g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
..=.|||+|.+..+|..|.+.+... +...+.++.|
T Consensus 64 ------------------------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 64 ------------------------LKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp ------------------------EEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred ------------------------eeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 0117999999999999998876543 2344566554
No 31
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.09 E-value=0.11 Score=43.38 Aligned_cols=76 Identities=16% Similarity=0.167 Sum_probs=53.6
Q ss_pred CCCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccc
Q 048588 34 QPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMK 113 (615)
Q Consensus 34 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r 113 (615)
.++..||.|.|||.+.++ +.|+++|+... .+.++.+..+
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G--~i~~v~~~~~------------------------------------ 50 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITE---EEMRKLFEKYG--KAGEVFIHKD------------------------------------ 50 (99)
T ss_dssp CCCTTEEEEESCCTTCCH---HHHHHHTSTTC--CCSEEEEETT------------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHhhcC--CeEEEEEecC------------------------------------
Confidence 346679999999998765 78999998763 4545444310
Q ss_pred ccccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCCC
Q 048588 114 TGFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPEP 176 (615)
Q Consensus 114 ~g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APeP 176 (615)
+=.|||+|++..+|..|.+.+... +...+.++.|-.+
T Consensus 51 --------------------------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 51 --------------------------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp --------------------------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred --------------------------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 017999999999999998876543 3345677777443
No 32
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.08 E-value=0.16 Score=42.66 Aligned_cols=78 Identities=21% Similarity=0.243 Sum_probs=54.5
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKT 114 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~ 114 (615)
....+|.|.|||.+.++ +.|+++|+.+ +.+.++.+.+|.. +.
T Consensus 13 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~~-------------------------------~~-- 54 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTE---VLILQLFSQI--GPCKSCKMITEHT-------------------------------SN-- 54 (103)
T ss_dssp CCCCEEEEESCCTTCCH---HHHHHHHHHH--SCEEEEEEECCCC-------------------------------SS--
T ss_pred CCCCEEEEeCCCccCCH---HHHHHHHHhc--CCEeEEEEEecCC-------------------------------CC--
Confidence 45679999999998765 7888888877 4577777664310 00
Q ss_pred cccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCC
Q 048588 115 GFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPE 175 (615)
Q Consensus 115 g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APe 175 (615)
+=.|||+|.+..+|..|.+.+... +...+.|+.|-.
T Consensus 55 -------------------------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 55 -------------------------DPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp -------------------------CCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred -------------------------CCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 017999999999999998866533 234566666643
No 33
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.04 E-value=0.25 Score=41.37 Aligned_cols=79 Identities=14% Similarity=0.129 Sum_probs=55.4
Q ss_pred CCCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccc
Q 048588 34 QPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMK 113 (615)
Q Consensus 34 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r 113 (615)
.....+|.|.|||.+.++ +.|+++|+.+ +.+.++.+.+|.+ ++
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~~~-----------------------------~~--- 54 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRD---PDLRQMFGQF--GKILDVEIIFNER-----------------------------GS--- 54 (103)
T ss_dssp SCCCCEEEEESCCTTCCH---HHHHHHGGGT--SCEEEEEEECCTT-----------------------------TT---
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecCC-----------------------------CC---
Confidence 345689999999998765 7899999876 4577777664320 00
Q ss_pred ccccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCC
Q 048588 114 TGFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPE 175 (615)
Q Consensus 114 ~g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APe 175 (615)
.=.|||+|.+..+|..|.+.+... +...+.|+.|-.
T Consensus 55 --------------------------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 55 --------------------------KGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp --------------------------CCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred --------------------------cEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 017999999999999998866543 334566666543
No 34
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.02 E-value=0.15 Score=42.72 Aligned_cols=79 Identities=20% Similarity=0.253 Sum_probs=54.8
Q ss_pred CCCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccc
Q 048588 34 QPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMK 113 (615)
Q Consensus 34 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r 113 (615)
..+..||.|.|||.+.++ +.|+++|+.+ +.+.++.+.+|-.. . +
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~i~~v~i~~~~~~--------------------------~-~---- 55 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRE---TDLQELFRPF--GSISRIYLAKDKTT--------------------------G-Q---- 55 (103)
T ss_dssp CSSSEEEEEESCCTTCCH---HHHHTTSTTT--CCEEEEEEEECSSS--------------------------C-S----
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCeEEEEEeecCCC--------------------------C-c----
Confidence 346689999999998765 7899999876 45777766644210 0 0
Q ss_pred ccccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 114 TGFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 114 ~g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
..=.|||+|.+..+|..|.+.+... +...+.|+.|
T Consensus 56 -------------------------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 56 -------------------------SKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp -------------------------EEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred -------------------------eeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 0117999999999999999876543 2334556655
No 35
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.00 E-value=0.19 Score=42.30 Aligned_cols=81 Identities=17% Similarity=0.262 Sum_probs=54.7
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKT 114 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~ 114 (615)
....+|.|.|||.+.++ +.|+++|+.+ |.+.++.+..|. +.+.+
T Consensus 13 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~------------------------------~~~~~- 56 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQ---REIRELFSTF--GELKTVRLPKKM------------------------------TGTGA- 56 (107)
T ss_dssp SCCCCEEEESCCTTCCH---HHHHHHHHTT--SCEEEEECCCCC------------------------------SSSCS-
T ss_pred CCCCEEEEeCCCCcCCH---HHHHHHHHcc--CCeEEEEEecCC------------------------------CCCCC-
Confidence 45689999999998765 7889999876 356666554331 00000
Q ss_pred cccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhh-cCC--CCCcceeecCCC
Q 048588 115 GFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQ-QTR--NPTLWLTDWAPE 175 (615)
Q Consensus 115 g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~-~~~--~p~~~~v~~APe 175 (615)
..=.|||+|.+..+|..|.+.+ ... +...+.|+.|-.
T Consensus 57 ------------------------~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~ 96 (107)
T 2cph_A 57 ------------------------HRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADS 96 (107)
T ss_dssp ------------------------SCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCC
T ss_pred ------------------------cCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCC
Confidence 0117999999999999998876 332 334667777643
No 36
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.99 E-value=0.15 Score=42.74 Aligned_cols=80 Identities=15% Similarity=0.160 Sum_probs=54.0
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKT 114 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~ 114 (615)
....||.|.|||.+.++ +.|+++|+.+ +.+.++.+.+|-. +
T Consensus 13 ~~~~~l~v~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~~-------------------------------~--- 53 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTE---QDLKEYFSTF--GEVLMVQVKKDLK-------------------------------T--- 53 (103)
T ss_dssp CCCCCEEEESCCSSCCH---HHHHHHHGGG--SCEEEEEEEECSS-------------------------------S---
T ss_pred CCCCEEEEEcCCCcCCH---HHHHHHHHhc--CCeEEEEEEecCC-------------------------------C---
Confidence 35579999999998765 7899999877 4577777665421 0
Q ss_pred cccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCCCCCcceeecCCC
Q 048588 115 GFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTRNPTLWLTDWAPE 175 (615)
Q Consensus 115 g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~~p~~~~v~~APe 175 (615)
|+ ..=.|||+|.+..+|..|.+....-+...+.++.|-.
T Consensus 54 ------g~----------------~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~~ 92 (103)
T 2cqg_A 54 ------GH----------------SKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS 92 (103)
T ss_dssp ------CS----------------EEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCCT
T ss_pred ------CC----------------ccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecCC
Confidence 00 0117999999999999988742222334566666533
No 37
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.97 E-value=0.11 Score=44.35 Aligned_cols=36 Identities=17% Similarity=0.141 Sum_probs=27.7
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEE
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVV 75 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~ 75 (615)
...++|.|.|||.+.++ +.|+++|+.+. .+.++.+.
T Consensus 13 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~G--~i~~~~i~ 48 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSW---QDLKDHMREAG--DVCYADVY 48 (108)
T ss_dssp SCCCEEEEESCCSSCCH---HHHHHHHGGGS--CEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CEeEEEEe
Confidence 45689999999998765 78999998763 46666554
No 38
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=94.96 E-value=0.21 Score=41.92 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=29.7
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
...+||.|.|||.+.++ +.|+++|+.+ + +.++.+.+|
T Consensus 13 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--g-i~~v~i~~~ 49 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQ---GDIDAIFKDL--S-IRSVRLVRD 49 (103)
T ss_dssp SSCEEEEEESCCTTCCH---HHHHHHTTTS--C-EEEEEEEEC
T ss_pred CCCeEEEEeCCCCCCCH---HHHHHHHHhC--C-ceEEEEeec
Confidence 45689999999998775 7899999876 4 777777654
No 39
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.94 E-value=0.17 Score=42.08 Aligned_cols=40 Identities=13% Similarity=0.234 Sum_probs=29.1
Q ss_pred CCCCcceEEEecCCCCCCccHHHHHHHHhcccCCCceE-EEEEEec
Q 048588 33 RQPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYL-THQVVSN 77 (615)
Q Consensus 33 ~~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~-~v~i~~d 77 (615)
......||.|.|||.+.++ +.|+++|+... .+. ++.+.+|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~---~~l~~~F~~~G--~i~~~v~i~~~ 45 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDE---NFISRAFATMG--ETVMSVKIIRN 45 (99)
T ss_dssp CCSSSSEEEECSCCTTCCH---HHHHHHHHHTT--CCCCEEEEEEC
T ss_pred CCCCccEEEEeCCCCCCCH---HHHHHHHHHhC--CcceEEEEeec
Confidence 3445679999999998765 78889998763 455 6666543
No 40
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=94.93 E-value=0.032 Score=46.32 Aligned_cols=32 Identities=19% Similarity=0.116 Sum_probs=23.7
Q ss_pred EEEEEecCHHHHHHHHHhhcCC---CCCcceeecC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR---NPTLWLTDWA 173 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~---~p~~~~v~~A 173 (615)
.|||+|.+..+|..|.+...+. +...+.++.|
T Consensus 46 ~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 46 FAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp EEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred eEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 7999999999999998765332 3345667665
No 41
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.89 E-value=0.14 Score=43.07 Aligned_cols=78 Identities=14% Similarity=0.087 Sum_probs=52.8
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKT 114 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~ 114 (615)
....||.|.|||.+.++ +.|+++|+.+ +.+.++.+.+|-. +.+
T Consensus 11 ~~~~~l~V~nLp~~~t~---~~l~~~f~~~--G~i~~v~i~~~~~-------------------------------~~~- 53 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSP---DSLRRVFEKY--GRVGDVYIPREPH-------------------------------TKA- 53 (103)
T ss_dssp SCCCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEECCBCSS-------------------------------SCS-
T ss_pred CCCeEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEeCCC-------------------------------CCC-
Confidence 45689999999998765 7899999876 4566665443210 000
Q ss_pred cccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 115 GFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 115 g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
..=.|||+|.+..+|..|.+.+... +...+.|+.|
T Consensus 54 ------------------------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 54 ------------------------PRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp ------------------------BCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred ------------------------CCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 0017999999999999999876543 2334566665
No 42
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.88 E-value=0.15 Score=43.85 Aligned_cols=37 Identities=11% Similarity=0.171 Sum_probs=28.2
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEe
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVS 76 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~ 76 (615)
....||.|.|||.+.++ +.|+++|+.+ +.+.++.+.+
T Consensus 15 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 51 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTD---ASLRKYFEGF--GDIEEAVVIT 51 (116)
T ss_dssp CSSSEEEEECCCSSCCH---HHHHHHHHTT--SCEEEEEESC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCeeEEEEEE
Confidence 45679999999998765 7889999876 4566666553
No 43
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=94.86 E-value=0.13 Score=44.36 Aligned_cols=37 Identities=14% Similarity=0.312 Sum_probs=28.3
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEe
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVS 76 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~ 76 (615)
++.+||.|.|||.+.++ +.|+++|+++ |.+.++.+.+
T Consensus 38 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~~~i~~ 74 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTD---TDLASTFLPF--GNVISAKVFI 74 (118)
T ss_dssp CCSEEEEEECSCTTCCH---HHHHHHTTTS--CEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEe
Confidence 35589999999998765 7899999876 4566666553
No 44
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=94.82 E-value=0.14 Score=42.43 Aligned_cols=79 Identities=11% Similarity=0.213 Sum_probs=53.3
Q ss_pred cceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccccc
Q 048588 37 QFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTGF 116 (615)
Q Consensus 37 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~g~ 116 (615)
..||.|.|||.+.++ +.|+++|+.. |.+.++.+.+|-. +
T Consensus 2 ~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~~-------------------------------~----- 40 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTE---EQILDLCSNV--GPVINLKMMFDPQ-------------------------------T----- 40 (96)
T ss_dssp CSEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEECCBCTT-------------------------------T-----
T ss_pred CcEEEEECCCCCCCH---HHHHHHHHhc--CCEEEEEEEeCCC-------------------------------C-----
Confidence 459999999998765 7889999876 4566665443210 0
Q ss_pred cCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCCC
Q 048588 117 LGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPEP 176 (615)
Q Consensus 117 ~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APeP 176 (615)
|+ ..-.|||+|.+..+|..|.+.+... +...+.++.|-.+
T Consensus 41 ----g~----------------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 82 (96)
T 2x1f_A 41 ----GR----------------SKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNS 82 (96)
T ss_dssp ----CC----------------BCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred ----Cc----------------cceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCC
Confidence 00 0117999999999999999876543 3345667776443
No 45
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=94.73 E-value=0.16 Score=43.81 Aligned_cols=74 Identities=18% Similarity=0.202 Sum_probs=52.8
Q ss_pred cceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccccc
Q 048588 37 QFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTGF 116 (615)
Q Consensus 37 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~g~ 116 (615)
.-+|.|.|||.+.++ +.|+++|+.+ |.+.++.+.+|.+ + .
T Consensus 5 ~~~lfV~nLp~~~te---~~L~~~F~~~--G~v~~v~i~~d~~-----------------------------~--~---- 44 (115)
T 4f25_A 5 SGNIFIKNLDKSIDN---KALYDTFSAF--GNILSCKVVCDEN-----------------------------G--S---- 44 (115)
T ss_dssp CCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEETT-----------------------------E--E----
T ss_pred CCEEEECCCCCCCCH---HHHHHHHhcc--CCEEEEEEeecCC-----------------------------C--C----
Confidence 448999999998776 7899999887 4677777765420 0 0
Q ss_pred cCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 117 LGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 117 ~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
+=.|||+|.+..+|+.|.+.+... +...+.|+.|
T Consensus 45 -----------------------kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 45 -----------------------KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp -----------------------EEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred -----------------------CceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 016999999999999998876543 2234555554
No 46
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.73 E-value=0.27 Score=41.19 Aligned_cols=77 Identities=14% Similarity=0.168 Sum_probs=54.1
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKT 114 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~ 114 (615)
.+..||.|.|||.+.++ +.|+++|+.+ +.+.++.+..|. . +
T Consensus 13 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~----------------------------g-~----- 53 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDD---ERLRKAFSPF--GTITSAKVMMEG----------------------------G-R----- 53 (103)
T ss_dssp SSCCCEEEECCCTTCCH---HHHHHTTTTT--SCEEEEEEEECS----------------------------S-S-----
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEcCC----------------------------C-C-----
Confidence 45679999999998765 7899999876 357666665331 0 0
Q ss_pred cccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecCC
Q 048588 115 GFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAP 174 (615)
Q Consensus 115 g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~AP 174 (615)
..=.|||+|.+..+|..|.+.+... +...+.|+.|-
T Consensus 54 ------------------------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 54 ------------------------SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp ------------------------EEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred ------------------------cCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 0117999999999999998876543 33456666653
No 47
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=94.73 E-value=0.19 Score=45.77 Aligned_cols=79 Identities=15% Similarity=0.154 Sum_probs=55.7
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccc
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTG 115 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~g 115 (615)
...||.|.|||.+.++ +.|+++|+.+. .+.++.+.+|.. ..+
T Consensus 38 ~~~~l~V~nlp~~~t~---~~l~~~F~~~G--~i~~v~i~~~~~---------------------------~~~------ 79 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTE---EQIYELFSKSG--DIKKIIMGLDKM---------------------------KKT------ 79 (156)
T ss_dssp TCCEEEEESCCTTCCH---HHHHHHHGGGS--CEEEEEEEECTT---------------------------TCC------
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhcC--CeEEEEEEecCC---------------------------CCc------
Confidence 5579999999998765 78999998773 577777765431 000
Q ss_pred ccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCC
Q 048588 116 FLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPE 175 (615)
Q Consensus 116 ~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APe 175 (615)
..=.|||+|.+..+|..|.+.+... +...+.|++|..
T Consensus 80 -----------------------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 118 (156)
T 1h2v_Z 80 -----------------------ACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAG 118 (156)
T ss_dssp -----------------------EEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred -----------------------cceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 0117999999999999998876543 334566777643
No 48
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=94.72 E-value=0.19 Score=43.56 Aligned_cols=78 Identities=12% Similarity=0.170 Sum_probs=52.9
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKT 114 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~ 114 (615)
.+..||.|.|||.+.++ +.|+++|+.. |.+.++.+..|- +.+
T Consensus 5 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~--------------------------------~g~- 46 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNE---KMLKAVFGKH--GPISEVLLIKDR--------------------------------TSK- 46 (116)
T ss_dssp CSCCEEEEECCTTTCCH---HHHHHHHHTS--SCCSEEEEECST--------------------------------TTT-
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEECC--------------------------------CCC-
Confidence 35579999999998765 7889999876 346666655321 000
Q ss_pred cccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecCC
Q 048588 115 GFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAP 174 (615)
Q Consensus 115 g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~AP 174 (615)
..=.|||+|.+..+|..|.+.+... +...+.|+.|-
T Consensus 47 ------------------------~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 47 ------------------------SRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp ------------------------CCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred ------------------------cccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 0117999999999999999876543 23345666653
No 49
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.71 E-value=0.19 Score=42.33 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=28.6
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
...+||.|.|||.+.++ +.|+++|+.+ + +.++.+.+|
T Consensus 13 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G-i~~v~i~~~ 49 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTE---ESIKEFFRGL--N-ISAVRLPRE 49 (104)
T ss_dssp SSCEEEEEESCCSSCCH---HHHHHHTTTS--C-EEEEECCBC
T ss_pred CCCCEEEEeCCCCcCCH---HHHHHHHHHC--C-ceEEEEecC
Confidence 45689999999998765 7899999876 4 767665533
No 50
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.69 E-value=0.11 Score=43.01 Aligned_cols=33 Identities=12% Similarity=0.099 Sum_probs=24.7
Q ss_pred EEEEEecCHHHHHHHHHhhcCC--CCCcceeecCC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAP 174 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~AP 174 (615)
.|||+|.+..+|..|.+.+... +...+.++.|-
T Consensus 50 ~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (96)
T 1x5t_A 50 YAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF 84 (96)
T ss_dssp EEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESC
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence 7999999999999999876543 23455666663
No 51
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.66 E-value=0.26 Score=40.17 Aligned_cols=70 Identities=13% Similarity=0.215 Sum_probs=51.3
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKT 114 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~ 114 (615)
.+..||.|.|||.+.++ +.|+++|+.+ +.+.++.+. +
T Consensus 6 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~~~----------------------------~---------- 42 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATE---QEIRSLFEQY--GKVLECDII----------------------------K---------- 42 (90)
T ss_dssp SCCEEEEEESCCSSCCH---HHHHHHHHTS--SCEEEEEEE----------------------------T----------
T ss_pred CCCeEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEE----------------------------C----------
Confidence 46679999999998765 7889999876 346555543 0
Q ss_pred cccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 115 GFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 115 g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
| .|||+|.+..+|..|.+.+... +...+.++.|
T Consensus 43 ---g-----------------------~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 43 ---N-----------------------YGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp ---T-----------------------EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred ---C-----------------------EEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 0 6999999999999998766543 3345666665
No 52
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.62 E-value=0.19 Score=42.78 Aligned_cols=74 Identities=20% Similarity=0.270 Sum_probs=53.1
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKT 114 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~ 114 (615)
+...||.|.|||.+.++ +.|+++|+.+. .+.++.+..+
T Consensus 23 ~~~~~l~V~nl~~~~t~---~~l~~~F~~~G--~i~~v~i~~~------------------------------------- 60 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTD---QLMRQTFSPFG--QIMEIRVFPE------------------------------------- 60 (109)
T ss_dssp SSCCEEEEECCSSCCCH---HHHHHHHHHHS--CEEEEEEETT-------------------------------------
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHhcC--CeEEEEEeCC-------------------------------------
Confidence 45679999999998765 78888887763 5666665532
Q ss_pred cccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCC
Q 048588 115 GFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPE 175 (615)
Q Consensus 115 g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APe 175 (615)
+-.|||+|.+..+|..|.+.+... +...+.+++|-.
T Consensus 61 -------------------------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 61 -------------------------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp -------------------------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred -------------------------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 017999999999999998776543 234556666643
No 53
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=94.61 E-value=0.12 Score=41.73 Aligned_cols=78 Identities=8% Similarity=0.015 Sum_probs=51.8
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccc
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTG 115 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~g 115 (615)
...||.|+|||.+.++ +.|+++|+.. |.+.++.+..|... .+
T Consensus 3 ~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~~~i~~~~~~-------------------------------~~-- 44 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTK---DHIMEIFSTY--GKIKMIDMPVERMH-------------------------------PH-- 44 (88)
T ss_dssp CCCEEEEECCCTTCCH---HHHHHHHHTT--SCEEEEECCEETTE-------------------------------EE--
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEeCCCC-------------------------------CC--
Confidence 4569999999998765 7889999876 35666554433210 00
Q ss_pred ccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 116 FLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 116 ~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
...-.|||+|.+..+|..|.+.+... +...+.++.|
T Consensus 45 ----------------------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 45 ----------------------LSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp ----------------------EECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred ----------------------CCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 00117999999999999999876543 2334556655
No 54
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=94.59 E-value=0.17 Score=43.04 Aligned_cols=36 Identities=8% Similarity=0.167 Sum_probs=27.5
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEE
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVV 75 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~ 75 (615)
.+..||.|.|||.+.++ +.|+++|+.+ |.+.++.+.
T Consensus 24 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~ 59 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQE---DEIQEKFCDY--GEIKNIHLN 59 (110)
T ss_dssp TTBEEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEECC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEE
Confidence 45679999999998765 7899999877 456666544
No 55
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.54 E-value=0.23 Score=42.08 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=27.9
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEe
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVS 76 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~ 76 (615)
...+||.|.|||.+.++ +.|+++|+.+ +.+.++.+.+
T Consensus 13 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 49 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEE---EALGEVLQQF--GDLKYVRVVL 49 (111)
T ss_dssp CCCCCEEEESCCTTCCH---HHHHHHHHTT--SCEEEEECCB
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHHhc--CCeEEEEEEe
Confidence 35679999999998765 7889999876 3566666543
No 56
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=94.53 E-value=0.15 Score=45.21 Aligned_cols=36 Identities=11% Similarity=0.192 Sum_probs=27.6
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEE
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVV 75 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~ 75 (615)
....||.|+|||.+.++ +.|+++|+.. |.+.++.+.
T Consensus 61 ~~~~~l~v~nlp~~~~~---~~l~~~f~~~--G~i~~v~i~ 96 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDD---KVLHAAFIPF--GDITDIQIP 96 (140)
T ss_dssp SSCCEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEECC
T ss_pred CCCcEEEEEeCCCCCCH---HHHHHHHHhc--CCEEEEEEe
Confidence 35679999999998765 7899999876 456666554
No 57
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.50 E-value=0.11 Score=43.58 Aligned_cols=36 Identities=11% Similarity=0.206 Sum_probs=26.5
Q ss_pred CCCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEE
Q 048588 34 QPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQV 74 (615)
Q Consensus 34 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i 74 (615)
..+..+|.|.|||.+.++ +.|+++|+.+ +.+.++.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~---~~l~~~f~~~--G~i~~v~i 44 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDD---KVLHAAFIPF--GDITDIQI 44 (102)
T ss_dssp CCCCSCEEEESCCSSCCH---HHHHHHHTTT--SCCCCEEC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHhhcc--CCEEEEEE
Confidence 346689999999998765 7899999876 34544443
No 58
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=94.48 E-value=0.27 Score=40.86 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=23.6
Q ss_pred CCCcceEEEecCCCCCCccHHHHHHHHhcccC
Q 048588 34 QPDQFTVLVRNVPPDPDESVTQLVEHFFLVNH 65 (615)
Q Consensus 34 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~ 65 (615)
.+...+|.|.|+|.+.++ +.|+++|+...
T Consensus 10 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~G 38 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTI---ESVADYFKQIG 38 (99)
T ss_dssp CCCCSEEEEECCCSSCCH---HHHHHHHTTTS
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHHhC
Confidence 356689999999998765 78999998763
No 59
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=94.21 E-value=0.21 Score=44.29 Aligned_cols=86 Identities=17% Similarity=0.224 Sum_probs=59.1
Q ss_pred CcceEEEecCCCCC-CccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 048588 36 DQFTVLVRNVPPDP-DESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKT 114 (615)
Q Consensus 36 ~~~TVlV~~IP~~~-~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~ 114 (615)
...||.|+|||.+. ++.+++.|.++|+.+ |.+.++.+.. .+ ++ .
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~--G~I~~v~i~~----------------------------~~--~~---r 72 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQ--GDILDIVVDL----------------------------SD--DN---S 72 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHH--SCEEEEEECC----------------------------CC--SS---C
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccC--CCeEEEEecc----------------------------CC--Cc---C
Confidence 45799999999965 456677788899887 4565543310 00 00 0
Q ss_pred cccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCCC--CCcceeecCCCCCcceec
Q 048588 115 GFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTRN--PTLWLTDWAPEPRDVYWD 182 (615)
Q Consensus 115 g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~~--p~~~~v~~APeP~DIiW~ 182 (615)
| .|||+|.+..+|..|.+.+.... ...+.|+.|-.+.|....
T Consensus 73 ---G-----------------------~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~~~~~ 116 (127)
T 2a3j_A 73 ---G-----------------------KAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQSQVAE 116 (127)
T ss_dssp ---C-----------------------CEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCHHHHC
T ss_pred ---C-----------------------EEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcchhccc
Confidence 1 59999999999999998765442 346778888777776654
No 60
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=94.20 E-value=0.31 Score=43.14 Aligned_cols=78 Identities=14% Similarity=0.098 Sum_probs=53.8
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKT 114 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~ 114 (615)
....+|.|.|||.+.++ +.|+++|+.+ |.+.++.+.+|-. ..++
T Consensus 44 ~~~~~l~V~nLp~~~te---~~L~~~F~~~--G~I~~v~i~~d~~---------------------------tg~~---- 87 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTE---RDLREVFSKY--GPIADVSIVYDQQ---------------------------SRRS---- 87 (129)
T ss_dssp CCSSCBCEETCTTSCCH---HHHHHHHTTT--SCEEEEEEECCSS---------------------------SSCC----
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecCC---------------------------CCcc----
Confidence 35579999999998765 7899999876 4577777664320 0000
Q ss_pred cccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 115 GFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 115 g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
.=.|||+|++..+|..|.+.+... +...+.|+.|
T Consensus 88 -------------------------~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 88 -------------------------RGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp -------------------------CCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred -------------------------ceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 017999999999999998876543 2344566655
No 61
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=94.08 E-value=0.25 Score=43.00 Aligned_cols=78 Identities=12% Similarity=0.131 Sum_probs=52.7
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKT 114 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~ 114 (615)
++..||.|.|||.+.++ +.|+++|+.+ |.+.++.+.+|.. +.+
T Consensus 20 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~~-------------------------------~~~- 62 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATE---EDIHDKFAEY--GEIKNIHLNLDRR-------------------------------TGY- 62 (126)
T ss_dssp SSSEEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEECCBCTT-------------------------------TSS-
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecCC-------------------------------CCc-
Confidence 45679999999998765 7889999876 3566665543320 000
Q ss_pred cccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 115 GFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 115 g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
..=.|||+|.+..+|..|.+.+... +...+.|+.|
T Consensus 63 ------------------------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 63 ------------------------LKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp ------------------------BCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred ------------------------cceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 0017999999999999999876543 2344556655
No 62
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.08 E-value=0.16 Score=42.16 Aligned_cols=81 Identities=14% Similarity=0.098 Sum_probs=53.6
Q ss_pred CCCCCcceEEEecCCCCCCc-cHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 048588 32 HRQPDQFTVLVRNVPPDPDE-SVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKP 110 (615)
Q Consensus 32 ~~~~~~~TVlV~~IP~~~~~-~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP 110 (615)
....+..+|.|.|||.+.++ .+++.|+++|+.. |.+.++.+..|-.
T Consensus 4 ~~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~--G~v~~v~i~~~~~------------------------------- 50 (96)
T 2dgx_A 4 GSSGNGADVQVSNIDYRLSRKELQQLLQEAFARH--GKVKSVELSPHTD------------------------------- 50 (96)
T ss_dssp CCCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHH--SCEEEEEECSCCS-------------------------------
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhcccc--CcEEEEEEEeCCC-------------------------------
Confidence 34556789999999997543 4444444888876 4566666543220
Q ss_pred cccccccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 111 SMKTGFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 111 ~~r~g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
+ | | .|||+|.+..+|+.|.+.+... +...+.|+.|
T Consensus 51 ~-r----g-----------------------~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 51 Y-Q----L-----------------------KAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp T-T----C-----------------------CEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred C-C----e-----------------------EEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 0 0 0 4999999999999998876543 3345666666
No 63
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.02 E-value=0.1 Score=44.96 Aligned_cols=74 Identities=16% Similarity=0.160 Sum_probs=52.0
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKT 114 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~ 114 (615)
.+..||.|+|||.+.++ +.|+++|+.+ |.+.++.+..
T Consensus 8 ~~~~~l~V~nLp~~~te---~~L~~~F~~~--G~i~~v~i~~-------------------------------------- 44 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLA---AEIQETFSRF--GSLGRVLLPE-------------------------------------- 44 (111)
T ss_dssp EEEEEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEECCS--------------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEeC--------------------------------------
Confidence 35679999999998765 7889999876 3455544320
Q ss_pred cccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCC
Q 048588 115 GFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPE 175 (615)
Q Consensus 115 g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APe 175 (615)
..-.|||+|.+..+|..|.+.+... +...+.+++|+.
T Consensus 45 ------------------------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 45 ------------------------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp ------------------------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred ------------------------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 0004999999999999999877643 334566777654
No 64
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.01 E-value=0.47 Score=40.45 Aligned_cols=38 Identities=18% Similarity=0.355 Sum_probs=28.8
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
.+..+|.|.|||.+.++ +.|+++|+.+ +.+.++.+.+|
T Consensus 23 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~~~i~~~ 60 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDE---QELENMLKPF--GQVISTRILRD 60 (114)
T ss_dssp CCTTEEEEESCCTTCCH---HHHHHTTTTT--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEEC
Confidence 35579999999998765 7899999876 35767666543
No 65
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=94.00 E-value=0.18 Score=42.91 Aligned_cols=34 Identities=21% Similarity=0.170 Sum_probs=25.3
Q ss_pred EEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPE 175 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APe 175 (615)
.|||+|.+..+|..|.+.+... +...+.++.|-.
T Consensus 64 ~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 64 YAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp EEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 7999999999999998776543 334566777643
No 66
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.99 E-value=0.36 Score=41.14 Aligned_cols=36 Identities=11% Similarity=-0.130 Sum_probs=27.4
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEE
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVV 75 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~ 75 (615)
+...+|.|+|||.+.++ +.|+++|+.+ |.+.++.+.
T Consensus 13 ~p~~~l~V~nLp~~~te---~~L~~~F~~f--G~V~~v~i~ 48 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVE---ADLVEALEKF--GTICYVMMM 48 (104)
T ss_dssp CCCSEEEEESCCSSCCH---HHHHHHHTTT--SCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEE
Confidence 45679999999998765 7889999876 456666544
No 67
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.94 E-value=0.29 Score=40.36 Aligned_cols=34 Identities=9% Similarity=0.071 Sum_probs=26.0
Q ss_pred EEEEecCHHHHHHHHHhhcCC--CCCcceeecCCCC
Q 048588 143 AFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPEP 176 (615)
Q Consensus 143 AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APeP 176 (615)
|||+|.+..+|..|.+.+... +...+.++.|.+.
T Consensus 57 afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 57 VNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred EEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 999999999999998866543 3456777777654
No 68
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=93.92 E-value=0.42 Score=45.69 Aligned_cols=100 Identities=15% Similarity=0.179 Sum_probs=66.0
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccc
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTG 115 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~g 115 (615)
...||.|.|||.+.++ +.|+++|+.. |.+.++.+.+|-. ..|
T Consensus 14 p~~tlfVgnLp~~~te---~~L~~~F~~~--G~I~~v~i~~d~~---------------------------tg~------ 55 (213)
T 4f02_A 14 PMASLYVGDLHPDVTE---AMLYEKFSPA--GPILSIRVCRDMI---------------------------TRR------ 55 (213)
T ss_dssp -CCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECTT---------------------------TCC------
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHhh--CCEEEEEEecccC---------------------------CCC------
Confidence 3469999999998776 7899999887 4688887775421 000
Q ss_pred ccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCCC--CCcceeecCCC--------CCcceecccc
Q 048588 116 FLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTRN--PTLWLTDWAPE--------PRDVYWDNLA 185 (615)
Q Consensus 116 ~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~~--p~~~~v~~APe--------P~DIiW~NL~ 185 (615)
..-.|||+|.+..+|..|.+...... ...+.+..+.. ..-|+=.||.
T Consensus 56 -----------------------~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~l~v~nl~ 112 (213)
T 4f02_A 56 -----------------------SLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 112 (213)
T ss_dssp -----------------------EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHHHHCTTEEEEESCC
T ss_pred -----------------------ccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccccccccccccceECCcc
Confidence 01179999999999999987765432 12233444332 2347777777
Q ss_pred cChhhHHHHHH
Q 048588 186 IPFVSLTIRRL 196 (615)
Q Consensus 186 ~~~~~r~~R~~ 196 (615)
....+..++.+
T Consensus 113 ~~~t~~~l~~~ 123 (213)
T 4f02_A 113 KSIDNKALYDT 123 (213)
T ss_dssp TTCCHHHHHHH
T ss_pred cccHHHHHHHH
Confidence 76666665554
No 69
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.89 E-value=0.43 Score=40.41 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=26.5
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEE
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQV 74 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i 74 (615)
....||.|.|||.+.++ +.|+++|+.+. .+.++.+
T Consensus 20 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~G--~v~~~~i 54 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRT---KDIEDVFYKYG--AIRDIDL 54 (109)
T ss_dssp CCSSEEEEESCCTTCCH---HHHHHHHGGGS--CEEEEEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CeEEEEE
Confidence 35579999999998765 78999998863 4655543
No 70
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=93.89 E-value=0.29 Score=42.57 Aligned_cols=77 Identities=16% Similarity=0.053 Sum_probs=52.0
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccc
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTG 115 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~g 115 (615)
...||.|+|||.+.++ +.|+++|+.. |.+.++.+.+|- +.+
T Consensus 34 ~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~v~~v~i~~~~--------------------------------~g~-- 74 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSD---ADIQELFAEF--GTLKKAAVDYDR--------------------------------SGR-- 74 (124)
T ss_dssp SCEEEEEESCCSSCCH---HHHHHHHHTT--SCCSEEEEECCS--------------------------------SSS--
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEEECC--------------------------------CCC--
Confidence 4479999999998765 7789999876 345566554321 000
Q ss_pred ccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecCC
Q 048588 116 FLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAP 174 (615)
Q Consensus 116 ~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~AP 174 (615)
..=.|||+|.+..+|..|.+.+... +...+.|+.|.
T Consensus 75 -----------------------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 75 -----------------------SLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp -----------------------CCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred -----------------------EeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 0117999999999999998866543 33456666653
No 71
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=93.84 E-value=0.1 Score=42.58 Aligned_cols=36 Identities=19% Similarity=0.119 Sum_probs=27.9
Q ss_pred EEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCCCC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPEPR 177 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APeP~ 177 (615)
.|||+|.+..+|..|.+.+... +...+.++.||...
T Consensus 42 ~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 42 TAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp EEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred EEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 7999999999999999876543 34567788887643
No 72
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=93.80 E-value=0.33 Score=48.11 Aligned_cols=95 Identities=13% Similarity=0.127 Sum_probs=69.8
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKT 114 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~ 114 (615)
.+..||.|.|||.+.++ +.|+++|+.+. .+.++.+..+
T Consensus 20 ~~~~~l~V~nLp~~~te---~~l~~~F~~~G--~i~~v~i~~~------------------------------------- 57 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITE---EDFKRLFERYG--EPSEVFINRD------------------------------------- 57 (261)
T ss_dssp CGGGEEEEESCCTTCCH---HHHHHHTGGGC--CCSEEEEETT-------------------------------------
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHHhcC--CEEEEEEeCC-------------------------------------
Confidence 45579999999998765 78999998763 3555544210
Q ss_pred cccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCCCCcceecccccChhhHH
Q 048588 115 GFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPEPRDVYWDNLAIPFVSLT 192 (615)
Q Consensus 115 g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APeP~DIiW~NL~~~~~~r~ 192 (615)
.=.|||+|.+..+|..|.+.+... ....+.++.|....-|+=.||.....+..
T Consensus 58 -------------------------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~l~v~nl~~~~t~~~ 112 (261)
T 3sde_A 58 -------------------------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNEL 112 (261)
T ss_dssp -------------------------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSSEEEEESCCTTCCHHH
T ss_pred -------------------------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCCcccccCCCCCCCHHH
Confidence 017999999999999998866543 34567788888888899999987766666
Q ss_pred HHHH
Q 048588 193 IRRL 196 (615)
Q Consensus 193 ~R~~ 196 (615)
++.+
T Consensus 113 l~~~ 116 (261)
T 3sde_A 113 LEQA 116 (261)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 73
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.79 E-value=0.13 Score=42.68 Aligned_cols=36 Identities=19% Similarity=0.176 Sum_probs=27.2
Q ss_pred EEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCCCC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPEPR 177 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APeP~ 177 (615)
.|||+|.+..+|..|.+.+... +...+.++.|-.|.
T Consensus 59 ~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (98)
T 2cqp_A 59 EAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGPS 96 (98)
T ss_dssp EEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCSS
T ss_pred EEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Confidence 7999999999999999876543 33456777776553
No 74
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=93.77 E-value=0.32 Score=41.59 Aligned_cols=94 Identities=12% Similarity=0.113 Sum_probs=60.8
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKT 114 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~ 114 (615)
....||.|+|||.+.++ +.|+++|+.+ |.+.++.+.+|- . + .
T Consensus 6 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~v~~v~i~~~~----------------------------~--~---~ 47 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITA---EEMYDIFGKY--GPIRQIRVGNTP----------------------------E--T---R 47 (115)
T ss_dssp TCCSEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEECST----------------------------T--T---T
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEeeCC----------------------------C--C---C
Confidence 34579999999998765 7789999876 457777665321 0 0 0
Q ss_pred cccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCCCCcceecccccChhhHH
Q 048588 115 GFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPEPRDVYWDNLAIPFVSLT 192 (615)
Q Consensus 115 g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APeP~DIiW~NL~~~~~~r~ 192 (615)
| .|||+|.+..+|..|.+.+... +...+.++.|-.+.+- .|+.....+..
T Consensus 48 ---g-----------------------~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~--~~~~~~~~~~~ 99 (115)
T 3lqv_A 48 ---G-----------------------TAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRAF--QKMDTKKKEEQ 99 (115)
T ss_dssp ---T-----------------------CEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHHT--TTSCHHHHHHH
T ss_pred ---c-----------------------EEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChhh--hhhhHhHhHHH
Confidence 1 6999999999999999876543 3345677776433322 44444333333
Q ss_pred HH
Q 048588 193 IR 194 (615)
Q Consensus 193 ~R 194 (615)
++
T Consensus 100 l~ 101 (115)
T 3lqv_A 100 LK 101 (115)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 75
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=93.67 E-value=0.38 Score=47.92 Aligned_cols=94 Identities=18% Similarity=0.185 Sum_probs=69.6
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccc
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTG 115 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~g 115 (615)
+..||.|+|||.+.++ +.|+++|+.. | +.++.+. +.
T Consensus 21 ~~~~l~V~nLp~~~te---~~l~~~F~~~--G-i~~~~~~----------------------------~~---------- 56 (284)
T 3smz_A 21 NRRKILIRGLPGDVTN---QEVHDLLSDY--E-LKYCFVD----------------------------KY---------- 56 (284)
T ss_dssp CCCEEEEECCCTTCCH---HHHHHHTTTS--C-EEEEEEE----------------------------TT----------
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHc--C-CEEEEEe----------------------------cC----------
Confidence 5569999999998775 7899999876 3 5554430 00
Q ss_pred ccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCCCCcceecccccChhhHHH
Q 048588 116 FLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPEPRDVYWDNLAIPFVSLTI 193 (615)
Q Consensus 116 ~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APeP~DIiW~NL~~~~~~r~~ 193 (615)
.| .|||+|.+..+|..|.+.+... +...+.++.+|...-|+=.||..+..+..+
T Consensus 57 ----~g--------------------~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~v~nlp~~~t~~~l 112 (284)
T 3smz_A 57 ----KG--------------------TAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQF 112 (284)
T ss_dssp ----TT--------------------EEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCSCEEEEESCCTTCCHHHH
T ss_pred ----CC--------------------EEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCCCEEEEcCCCCcCCHHHH
Confidence 00 6999999999999998776543 345677888988888999999887776666
Q ss_pred HHHH
Q 048588 194 RRLI 197 (615)
Q Consensus 194 R~~~ 197 (615)
+.++
T Consensus 113 ~~~f 116 (284)
T 3smz_A 113 EELV 116 (284)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 76
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.65 E-value=0.26 Score=41.20 Aligned_cols=80 Identities=18% Similarity=0.249 Sum_probs=54.2
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccc
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTG 115 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~g 115 (615)
+.+||.|.|||.+.++ +.|+++|+.+. .+.++.+.+|-. +
T Consensus 7 ~~~~l~V~nlp~~~~~---~~l~~~f~~~G--~i~~~~i~~~~~-------------------------------~---- 46 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATE---EQLKDIFSEVG--PVVSFRLVYDRE-------------------------------T---- 46 (104)
T ss_dssp HHSCEEEESCCTTSCH---HHHHHHHHTTS--CCSEEEEEEETT-------------------------------T----
T ss_pred CccEEEEeCCCCcCCH---HHHHHHHHhcC--CeeEEEEEeCCC-------------------------------C----
Confidence 4579999999998765 78899998763 465665554320 0
Q ss_pred ccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCCC
Q 048588 116 FLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPEP 176 (615)
Q Consensus 116 ~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APeP 176 (615)
| ...=.|||+|.+..+|..|.+.+... +...+.++.|-.+
T Consensus 47 -----g----------------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 88 (104)
T 1p1t_A 47 -----G----------------KPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASE 88 (104)
T ss_dssp -----T----------------EEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCT
T ss_pred -----C----------------ccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCc
Confidence 0 00117999999999999999876543 3345667766443
No 77
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=93.64 E-value=0.23 Score=42.86 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=24.9
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEE
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVV 75 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~ 75 (615)
..++|.|.|||.+.++ +.|+++|+.. +.+.++.+.
T Consensus 15 ~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~v~~~~i~ 49 (115)
T 3beg_B 15 SENRVVVSGLPPSGSW---QDLKDHMREA--GDVCYADVY 49 (115)
T ss_dssp --CCEEEEECCSSCCT---THHHHHHGGG--SCEEEEEEC
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEe
Confidence 5689999999998765 6788899876 346555443
No 78
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=93.63 E-value=0.43 Score=42.96 Aligned_cols=75 Identities=20% Similarity=0.143 Sum_probs=54.0
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKT 114 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~ 114 (615)
....||.|.|||.+.++ +.|+++|+.+ |.+.++.+.+|
T Consensus 71 ~~~~~l~V~nl~~~~t~---~~l~~~F~~~--G~i~~v~i~~~------------------------------------- 108 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNK---TELERAFGYY--GPLRSVWVARN------------------------------------- 108 (150)
T ss_dssp TTSCEEEEESCCSCCSC---HHHHHHHHHH--SCEEEEEECSS-------------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhh--CCEEEEEEeeC-------------------------------------
Confidence 35579999999998765 6788888876 45666665533
Q ss_pred cccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCC
Q 048588 115 GFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPE 175 (615)
Q Consensus 115 g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APe 175 (615)
..=.|||+|.+..+|..|.+.+... +...+.++.|-.
T Consensus 109 ------------------------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 109 ------------------------PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp ------------------------SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred ------------------------CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 0016999999999999998876543 334566777644
No 79
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.62 E-value=0.36 Score=40.26 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=25.2
Q ss_pred EEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPE 175 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APe 175 (615)
.|||+|.+..+|..|.+.+... +...+.|+.|-.
T Consensus 56 ~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 56 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp EEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred EEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 7999999999999998876543 234566766643
No 80
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.50 E-value=0.55 Score=38.80 Aligned_cols=72 Identities=14% Similarity=0.119 Sum_probs=51.0
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKT 114 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~ 114 (615)
+...+|.|.|||.+.++ +.|+++|+.+. .+.++.+..
T Consensus 15 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~G--~v~~v~~~~-------------------------------------- 51 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSL---AALAREFDRFG--SIRTIDHVK-------------------------------------- 51 (97)
T ss_dssp CCCSCEEEECCCSSCCH---HHHHHHHHTTS--CEEEEEECS--------------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CeeEEEEeC--------------------------------------
Confidence 34579999999998765 78899997763 455543320
Q ss_pred cccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--C--CCcceeecC
Q 048588 115 GFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--N--PTLWLTDWA 173 (615)
Q Consensus 115 g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~--p~~~~v~~A 173 (615)
+ +=.|||+|.+..+|..|.+.+... + ...+.++.|
T Consensus 52 ------~------------------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 52 ------G------------------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp ------S------------------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred ------C------------------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 0 016999999999999998876543 2 456677766
No 81
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=93.49 E-value=0.67 Score=43.73 Aligned_cols=100 Identities=11% Similarity=0.057 Sum_probs=63.6
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccc
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTG 115 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~g 115 (615)
...||.|+|||.+.++ +.|+++|+.+ |.+.++.+.+|... .+
T Consensus 27 ~~~~l~V~nLp~~~t~---~~l~~~f~~~--G~i~~v~i~~~~~~---------------------------g~------ 68 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGE---DTIRQAFAPF--GPIKSIDMSWDSVT---------------------------MK------ 68 (216)
T ss_dssp HHTEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEECCC-CC----------------------------C------
T ss_pred cCCEEEEECCCCCCCH---HHHHHHHHhC--CCEEEEEEeecCCC---------------------------Cc------
Confidence 3469999999998775 7899999877 45767665533200 00
Q ss_pred ccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCCC--CCcceeecCC-----------------CC
Q 048588 116 FLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTRN--PTLWLTDWAP-----------------EP 176 (615)
Q Consensus 116 ~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~~--p~~~~v~~AP-----------------eP 176 (615)
..=.|||+|.+..+|..|.+.+.... ...+.+..+. ..
T Consensus 69 -----------------------~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~ 125 (216)
T 2qfj_A 69 -----------------------HKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAF 125 (216)
T ss_dssp -----------------------CCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTS
T ss_pred -----------------------cCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCC
Confidence 01179999999999999998665432 2334444432 22
Q ss_pred CcceecccccChhhHHHHHH
Q 048588 177 RDVYWDNLAIPFVSLTIRRL 196 (615)
Q Consensus 177 ~DIiW~NL~~~~~~r~~R~~ 196 (615)
.-|+-.||.....+.-++.+
T Consensus 126 ~~l~v~nlp~~~t~~~l~~~ 145 (216)
T 2qfj_A 126 NRIYVASVHQDLSDDDIKSV 145 (216)
T ss_dssp CEEEEECCCTTCCHHHHHHH
T ss_pred cEEEEeCCCCcCCHHHHHHH
Confidence 45667777666555555443
No 82
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.46 E-value=0.31 Score=41.62 Aligned_cols=82 Identities=13% Similarity=0.072 Sum_probs=54.5
Q ss_pred CCcceEEEecCCCCCCccHHHHHH---HHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCc
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVE---HFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPS 111 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~---~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~ 111 (615)
.+..+|.|.|||.+.++ +.|+ ++|+.+ |.+.++.+..|... .+ .++
T Consensus 13 ~~~~~l~V~nLp~~~~~---~~l~~~~~~F~~~--G~i~~v~i~~~~~~----------------------~~--~~~-- 61 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLAD---PEVLKRPEYFGKF--GKIHKVVINNSTSY----------------------AG--SQG-- 61 (111)
T ss_dssp CCSSCEEEEEECTTTCC---HHHHHSTTTTTTT--SCEEEEEEECCSSC----------------------CS--SSC--
T ss_pred cCCCEEEEECCCCCCCH---HHHHHHHHHhhcc--CCEEEEEEecCCCc----------------------Cc--cCC--
Confidence 45679999999998765 5677 899876 45777776543210 00 000
Q ss_pred ccccccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecCC
Q 048588 112 MKTGFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAP 174 (615)
Q Consensus 112 ~r~g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~AP 174 (615)
..=.|||+|.+..+|..|.+.+... +...+.|+.|-
T Consensus 62 ---------------------------~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~ 99 (111)
T 2cpi_A 62 ---------------------------PSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGT 99 (111)
T ss_dssp ---------------------------CCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCC
T ss_pred ---------------------------CCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEecc
Confidence 0127999999999999999876543 23456666663
No 83
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=93.44 E-value=0.56 Score=43.53 Aligned_cols=101 Identities=8% Similarity=0.131 Sum_probs=64.2
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKT 114 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~ 114 (615)
.+.+||.|.|||.+.++ +.|+++|+.+ |.+.++.+..|-. ..+
T Consensus 11 ~~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~~~---------------------------~g~----- 53 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTD---ESLRSHFEQW--GTLTDCVVMRDPN---------------------------TKR----- 53 (196)
T ss_dssp GGGGEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECTT---------------------------TCC-----
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEEcCC---------------------------CCC-----
Confidence 35689999999998765 7899999877 4577777665431 000
Q ss_pred cccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC-CCCcceeecCC------------CCCccee
Q 048588 115 GFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR-NPTLWLTDWAP------------EPRDVYW 181 (615)
Q Consensus 115 g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~-~p~~~~v~~AP------------eP~DIiW 181 (615)
..=.|||.|.+..+|..|.+..... +...+.+..|. .+..|+=
T Consensus 54 ------------------------~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V 109 (196)
T 1l3k_A 54 ------------------------SRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFV 109 (196)
T ss_dssp ------------------------EEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC-----------CCSEEEE
T ss_pred ------------------------ccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCcccccccccCCCcceEEE
Confidence 0017999999999999998762111 11223333332 2245777
Q ss_pred cccccChhhHHHHHH
Q 048588 182 DNLAIPFVSLTIRRL 196 (615)
Q Consensus 182 ~NL~~~~~~r~~R~~ 196 (615)
.||.....+..++.+
T Consensus 110 ~nLp~~~t~~~l~~~ 124 (196)
T 1l3k_A 110 GGIKEDTEEHHLRDY 124 (196)
T ss_dssp ECCTTTCCHHHHHHH
T ss_pred eCCCCCCCHHHHHHH
Confidence 777766666555554
No 84
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=93.37 E-value=0.26 Score=41.09 Aligned_cols=34 Identities=21% Similarity=0.138 Sum_probs=24.8
Q ss_pred eEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 39 TVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 39 TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
||.|.|||.+.++ +.|+++|+... .+.++.+..|
T Consensus 2 ~l~V~nLp~~~t~---~~l~~~F~~~G--~i~~v~i~~~ 35 (101)
T 2hvz_A 2 KVYVGNLGTGAGK---GELERAFSYYG--PLRTVWIARN 35 (101)
T ss_dssp EEEEECCCSSCSH---HHHHHHHHHHC--CCSEEEEESS
T ss_pred EEEEeCCCCCCCH---HHHHHHHHhcC--CeEEEEEeeC
Confidence 7899999998765 77888887763 4555555533
No 85
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=92.96 E-value=0.38 Score=41.04 Aligned_cols=70 Identities=17% Similarity=0.172 Sum_probs=49.9
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKT 114 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~ 114 (615)
....+|.|.|||.+.++ +.|+++|+.+. .+.++.+.
T Consensus 29 ~~~~~l~V~nLp~~~t~---~~L~~~F~~~G--~i~~v~i~--------------------------------------- 64 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQE---SELNEIFGPFG--PMKEVKIL--------------------------------------- 64 (108)
T ss_dssp CSCSEEEECSSCTTCCH---HHHHHHHTTTS--CCCEEEEE---------------------------------------
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHHhcC--CEEEEEEE---------------------------------------
Confidence 45679999999998765 78899997763 34444432
Q ss_pred cccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 115 GFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 115 g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
+=.|||+|.+..+|..|.+.+... +...+.|+.|
T Consensus 65 -------------------------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 65 -------------------------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp -------------------------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred -------------------------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 017999999999999998876543 3344566665
No 86
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=92.94 E-value=0.21 Score=41.97 Aligned_cols=79 Identities=11% Similarity=0.089 Sum_probs=52.3
Q ss_pred cceEEEecCCCCCC---ccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccc
Q 048588 37 QFTVLVRNVPPDPD---ESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMK 113 (615)
Q Consensus 37 ~~TVlV~~IP~~~~---~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r 113 (615)
+.||.|.|||...+ +...+.|+++|+.. |.+.++.+.+|-. +.+
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~--G~i~~v~i~~d~~-------------------------------tg~ 52 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKA--GKVVNMEFPIDEA-------------------------------TGK 52 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTT--SCEEEEECCEETT-------------------------------TTE
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhc--CCEeEEEEEEcCC-------------------------------CCc
Confidence 46999999998221 23457899999876 4577776654421 000
Q ss_pred ccccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCCC--C-CcceeecC
Q 048588 114 TGFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTRN--P-TLWLTDWA 173 (615)
Q Consensus 114 ~g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~~--p-~~~~v~~A 173 (615)
. +=.|||+|.+..+|..|.+.+.... . ..+.|+.|
T Consensus 53 ~-------------------------kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a 90 (100)
T 3ns6_A 53 T-------------------------KGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTM 90 (100)
T ss_dssp E-------------------------CSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEES
T ss_pred c-------------------------ceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEEC
Confidence 0 0179999999999999998765432 2 34566655
No 87
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=92.89 E-value=0.44 Score=43.71 Aligned_cols=79 Identities=10% Similarity=-0.081 Sum_probs=54.6
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccc
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTG 115 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~g 115 (615)
..++|.|.|||.+.++ +.|+++|+.+.+..+.++.+++|-. ..++
T Consensus 54 ~~~~lfVgnLp~~~te---~~L~~~F~~~G~i~v~~v~i~~d~~---------------------------tg~s----- 98 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTD---QQLIQVIRSIGVYDVVELKFAENRA---------------------------NGQS----- 98 (156)
T ss_dssp --CEEEEECCCTTCCH---HHHHHHHHHTTCCCEEEEEEEECTT---------------------------TCCE-----
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHHCCccEEEEEEEecCC---------------------------CCcc-----
Confidence 4579999999998765 7889999877543688887775531 0000
Q ss_pred ccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 116 FLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 116 ~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
+=.|||+|.+..+|..|.+.+... +...+.|+.|
T Consensus 99 ------------------------kGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 99 ------------------------KGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp ------------------------EEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred ------------------------ceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 117999999999999998876543 2334556555
No 88
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=92.86 E-value=0.22 Score=45.13 Aligned_cols=100 Identities=9% Similarity=0.154 Sum_probs=63.1
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccc
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTG 115 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~g 115 (615)
+..||.|+|||.+.++ +.|+++|+.. |.+.++.+.+|.. ..++
T Consensus 2 ~~~~l~v~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~~---------------------------~g~~----- 44 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTE---DNLREYFGKY--GTVTDLKIMKDPA---------------------------TGRS----- 44 (167)
T ss_dssp GGGEEEECSCCTTCCH---HHHHHHHTTT--CCEEEEECCCCTT---------------------------TSSC-----
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEECCC---------------------------CCCc-----
Confidence 3569999999998775 7899999876 4576666543310 0000
Q ss_pred ccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCCCCCcceeecCC------CCCcceecccccChh
Q 048588 116 FLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTRNPTLWLTDWAP------EPRDVYWDNLAIPFV 189 (615)
Q Consensus 116 ~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~~p~~~~v~~AP------eP~DIiW~NL~~~~~ 189 (615)
.=.|||+|.+..+|..|.+....-+...+.+..|. .+..|+=.||..+..
T Consensus 45 ------------------------~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~V~nlp~~~t 100 (167)
T 2cjk_A 45 ------------------------RGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDEQDKTGKIFVGGIGPDVR 100 (167)
T ss_dssp ------------------------CSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCHHHHHHCEEEEEEEECTTCC
T ss_pred ------------------------cceEEEEEccHHHHHHHHhcccccCCeEcccccccchhhccCCCeEEECCCCCCCC
Confidence 01699999999999999875322222233444432 233567777777666
Q ss_pred hHHHHHH
Q 048588 190 SLTIRRL 196 (615)
Q Consensus 190 ~r~~R~~ 196 (615)
+..++.+
T Consensus 101 ~~~l~~~ 107 (167)
T 2cjk_A 101 PKEFEEF 107 (167)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 89
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=92.85 E-value=0.33 Score=40.17 Aligned_cols=71 Identities=11% Similarity=0.188 Sum_probs=49.6
Q ss_pred CCCcceEEEecCCC-CCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcc
Q 048588 34 QPDQFTVLVRNVPP-DPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSM 112 (615)
Q Consensus 34 ~~~~~TVlV~~IP~-~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~ 112 (615)
.+...||.|.|||. +.++ +.|+++|+.+. .+.++.+.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~---~~l~~~F~~~G--~v~~v~i~------------------------------------- 44 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSK---EDLFRIFSPYG--HIMQINIK------------------------------------- 44 (96)
T ss_dssp --CCEEEEEESSTTSCCCH---HHHHHHHTTTC--CCCEEEEE-------------------------------------
T ss_pred CCCCCEEEEeCCCcccCCH---HHHHHHHHhcC--CEEEEEEe-------------------------------------
Confidence 45667999999997 7765 78999998763 45444430
Q ss_pred cccccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 113 KTGFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 113 r~g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
+=.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 45 ---------------------------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 45 ---------------------------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp ---------------------------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred ---------------------------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 017999999999999999876543 2345566665
No 90
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=92.83 E-value=0.65 Score=41.04 Aligned_cols=77 Identities=14% Similarity=0.131 Sum_probs=53.0
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccc
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTG 115 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~g 115 (615)
...||.|.|||.+.++ +.|+++|+.+ |.+.++.+.+|-. +.+
T Consensus 41 ~~~~l~V~nLp~~~~~---~~l~~~F~~~--G~i~~v~i~~~~~-------------------------------~~~-- 82 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDE---VQLRQLFERY--GPIESVKIVCDRE-------------------------------TRQ-- 82 (139)
T ss_dssp TTSEEEEESCSTTCCH---HHHHHHHHHH--SCEEEEEEEEETT-------------------------------TTE--
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEcCC-------------------------------CCC--
Confidence 3479999999998765 7788888876 4577777664420 000
Q ss_pred ccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 116 FLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 116 ~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
..-.|||+|++..+|..|...+... +...+.|+.|
T Consensus 83 -----------------------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 83 -----------------------SRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp -----------------------EEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred -----------------------cceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 0117999999999999998876543 2345566655
No 91
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.80 E-value=0.42 Score=40.68 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=22.6
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccC
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNH 65 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~ 65 (615)
....||.|.|||.+.++ +.|+++|+.+.
T Consensus 13 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~G 40 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTL---DDLADFFKQCG 40 (113)
T ss_dssp CCCCEEEEECCCTTCCH---HHHHHHHTTTS
T ss_pred CCCCEEEEcCCCCCCCH---HHHHHHHHhcC
Confidence 45679999999998765 78899997763
No 92
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=92.71 E-value=0.44 Score=39.67 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=25.5
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEE
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQV 74 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i 74 (615)
++..||.|.|||.+.++ +.|+++|+.. |.+.++.+
T Consensus 25 ~~~~~l~V~nlp~~~~~---~~l~~~f~~~--G~i~~~~~ 59 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATE---ADLIPLFQNF--GFILDFKH 59 (101)
T ss_dssp SSCCEEEEESCCTTCCH---HHHHHHHHTT--SCCSEEEE
T ss_pred CCCCEEEEcCCCcccCH---HHHHHHHHhC--CCEEEEEE
Confidence 45679999999998765 7888899776 34444443
No 93
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=92.65 E-value=0.63 Score=42.72 Aligned_cols=38 Identities=8% Similarity=0.159 Sum_probs=28.9
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
...+||.|.|||...++ +.|+++|+.+ |.+.++.+..|
T Consensus 70 ~~~~~l~V~nLp~~~t~---~~L~~~F~~~--G~i~~v~i~~~ 107 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQE---DEIQEKFCDY--GEIKNIHLNLD 107 (165)
T ss_dssp C-CEEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHhhcC--CCEEEEEEEec
Confidence 35579999999998765 7899999887 46777776644
No 94
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=92.64 E-value=0.18 Score=41.06 Aligned_cols=77 Identities=9% Similarity=0.065 Sum_probs=49.2
Q ss_pred ceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccc
Q 048588 38 FTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTGFL 117 (615)
Q Consensus 38 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~g~~ 117 (615)
.||.|.|||.+.++ +.|+++|+... .+.++.+.+|-. +
T Consensus 2 ~~l~V~nLp~~~t~---~~l~~~F~~~G--~i~~v~i~~~~~-------------------------------~------ 39 (90)
T 2ki2_A 2 RNIYVGNLVYSATS---EQVKELFSQFG--KVFNVKLIYDRE-------------------------------T------ 39 (90)
T ss_dssp EEEEEEEECTTSSH---HHHTTTHHHHT--CCSEEEECCCSS-------------------------------S------
T ss_pred cEEEECCCCCCCCH---HHHHHHHHhcC--CEEEEEEEEcCC-------------------------------C------
Confidence 48999999998765 77888888763 455555543220 0
Q ss_pred CCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCCC
Q 048588 118 GLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPEP 176 (615)
Q Consensus 118 g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APeP 176 (615)
|+ .+=.|||+|.+.. |..|.+.+... +...+.++.|..+
T Consensus 40 ---~~----------------~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 40 ---KK----------------PKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp ---CC----------------CCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred ---CC----------------cceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 00 0117999999999 88888876543 3345667776443
No 95
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=92.62 E-value=0.38 Score=45.11 Aligned_cols=83 Identities=16% Similarity=0.046 Sum_probs=55.5
Q ss_pred cceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccccc
Q 048588 37 QFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTGF 116 (615)
Q Consensus 37 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~g~ 116 (615)
..||.|.|||.+.++ +.|+++|+.+. .+.++.+.+|- +.+
T Consensus 88 ~~~l~V~nLp~~~te---~~L~~~F~~~G--~I~~v~i~~d~--------------------------------~g~--- 127 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSD---ADIQELFAEFG--TLKKAAVDYDR--------------------------------SGR--- 127 (177)
T ss_dssp CEEEEEECCCSCCCH---HHHHHHHHHTS--CCSEEEECCCT--------------------------------TSS---
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhcC--CeEEEEEEECC--------------------------------CCC---
Confidence 469999999998765 77888998763 45555554321 000
Q ss_pred cCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCCCCccee
Q 048588 117 LGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPEPRDVYW 181 (615)
Q Consensus 117 ~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APeP~DIiW 181 (615)
..=.|||+|.+..+|..|.+.+... +...+.|+.|..+....|
T Consensus 128 ----------------------~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~~~~~ 172 (177)
T 2f3j_A 128 ----------------------SLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDLEH 172 (177)
T ss_dssp ----------------------CSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGGGGCC
T ss_pred ----------------------EeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCCC
Confidence 0016999999999999998866543 334567777765544433
No 96
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=92.54 E-value=0.42 Score=39.89 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=26.5
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
...+||.|.|||.+.++ +.|+++|+.. | +.++.+.+|
T Consensus 17 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G-i~~v~i~~~ 53 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTE---ESIKEFFRGL--N-ISAVRLPRE 53 (100)
T ss_dssp ---CEEEESCCSSCCSS---SHHHHHSCSS--C-EEEEECSCC
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHhc--C-CeEEEEEec
Confidence 46689999999998765 6789999876 4 777765533
No 97
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=92.52 E-value=0.22 Score=40.94 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=21.8
Q ss_pred CCCcceEEEecCCCCCCccHHHHHHHHhcccC
Q 048588 34 QPDQFTVLVRNVPPDPDESVTQLVEHFFLVNH 65 (615)
Q Consensus 34 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~ 65 (615)
.+...+|.|.|||.+.++ +.|+++|+...
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G 40 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSI---DEILDFFYGYQ 40 (95)
T ss_dssp ---CEEEEEECCCTTCCH---HHHHHHTTTSC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhcC
Confidence 345689999999998765 78999997653
No 98
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=92.41 E-value=0.22 Score=45.30 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=27.3
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhccc----C----CC-ceEEEEEEec
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVN----H----PD-HYLTHQVVSN 77 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~----~----p~-~v~~v~i~~d 77 (615)
+.+||.|+|||.+.++ +.|+++|+.. . |+ .+.++.+..+
T Consensus 3 ~~~~l~V~nLp~~~t~---~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~ 50 (172)
T 2g4b_A 3 SARRLYVGNIPFGITE---EAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD 50 (172)
T ss_dssp GGGEEEEESCCTTCCH---HHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT
T ss_pred cccEEEEcCCCcccCH---HHHHHHHHHHhhhcccccCCCCceeeeEecCC
Confidence 4579999999998765 6778888765 2 11 5666666544
No 99
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=92.39 E-value=0.82 Score=44.16 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=27.7
Q ss_pred CCcceEEEecCCC-CCCccHHHHHHHHhcccCCCceEEEEEE
Q 048588 35 PDQFTVLVRNVPP-DPDESVTQLVEHFFLVNHPDHYLTHQVV 75 (615)
Q Consensus 35 ~~~~TVlV~~IP~-~~~~~~~~~l~~~F~~~~p~~v~~v~i~ 75 (615)
+...||.|+|||. +.++ +.|+++|+.+ |.+.++.+.
T Consensus 32 ~~~~~l~V~nLp~~~~te---~~L~~~F~~~--G~i~~v~i~ 68 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTP---QSLFILFGVY--GDVQRVKIL 68 (229)
T ss_dssp CCCSEEEEESCCTTTCCH---HHHHHHHHHH--TCEEEEEEC
T ss_pred CCCCEEEEeCCCcccCCH---HHHHHHHHhC--CCeEEEEEE
Confidence 4568999999999 7775 7889999876 346666554
No 100
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=92.23 E-value=0.31 Score=43.44 Aligned_cols=77 Identities=12% Similarity=0.064 Sum_probs=50.7
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccc
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTG 115 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~g 115 (615)
...||.|.|||.+.++ +.|+++|+... .+.++.+.+|. .+.+
T Consensus 46 ~~~~l~V~nLp~~~te---~~L~~~F~~~G--~i~~v~i~~~~-------------------------------~~g~-- 87 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSP---DTLRRVFEKYG--RVGDVYIPRDR-------------------------------YTKE-- 87 (135)
T ss_dssp GCCCEEEECCCSSCHH---HHHHHHHGGGS--CCSEEECCCCS-------------------------------SSSS--
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhcC--CEEEEEEEecC-------------------------------CCCc--
Confidence 3469999999998654 78899998764 45555443221 0000
Q ss_pred ccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 116 FLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 116 ~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
..=.|||+|.+..+|..|.+.+... +...+.|+.|
T Consensus 88 -----------------------~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 88 -----------------------SRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp -----------------------CCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred -----------------------cceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 0116999999999999998876543 2345566655
No 101
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.17 E-value=0.89 Score=37.27 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=24.5
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEE
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLT 71 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~ 71 (615)
...++|.|.|||.+.++ +.|+++|+... .+.+
T Consensus 6 ~~~~~l~V~nl~~~~t~---~~l~~~F~~~G--~v~~ 37 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDS---AQLSEYFLAFG--PVAS 37 (94)
T ss_dssp TTCCEEEEECCCTTCCH---HHHHHHGGGTS--CEEE
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHHhcC--CeEE
Confidence 35579999999998775 78999998763 4544
No 102
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=92.12 E-value=0.59 Score=42.29 Aligned_cols=77 Identities=12% Similarity=0.071 Sum_probs=51.6
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccc
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTG 115 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~g 115 (615)
...+|.|.|||.+.++ +.|+++|+.+ |.+.++.+.+|. .+.+
T Consensus 69 ~~~~l~v~nl~~~~~~---~~l~~~F~~~--G~v~~~~i~~~~-------------------------------~~g~-- 110 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSP---DTLRRVFEKY--GRVGDVYIPRDR-------------------------------YTKE-- 110 (158)
T ss_dssp BCCEEEEESCCTTCCH---HHHHHHHHHH--SCEEEEECCCCS-------------------------------SCTT--
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEeecC-------------------------------CCCc--
Confidence 4679999999998765 7888889776 356666544321 0000
Q ss_pred ccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 116 FLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 116 ~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
..=.|||+|.+..+|..|.+.+... +...+.++.|
T Consensus 111 -----------------------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 111 -----------------------SRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp -----------------------SCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred -----------------------cceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 0117999999999999999876543 2344556554
No 103
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.12 E-value=0.8 Score=37.82 Aligned_cols=35 Identities=14% Similarity=0.089 Sum_probs=26.2
Q ss_pred EEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCCC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPEP 176 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APeP 176 (615)
.|||+|.+..+|..|.+.+... +...+.|+.|-.+
T Consensus 58 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 58 RAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp EEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 6999999999999998876543 3455777776443
No 104
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.11 E-value=0.85 Score=38.37 Aligned_cols=36 Identities=8% Similarity=0.069 Sum_probs=26.2
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEE
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQV 74 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i 74 (615)
.+..||.|.|||.+.++ +.|+++|+.+.++ +.++.+
T Consensus 6 ~~~~~l~V~nLp~~~t~---~~l~~~f~~~G~~-v~~v~i 41 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKR---EEILEEIAKVTEG-VLDVIV 41 (109)
T ss_dssp CCSEEEEEECCCTTSCH---HHHHHHHHHHSTT-EEEEEC
T ss_pred cCCCEEEEeCCCCcCCH---HHHHHHHHHhcCC-ceEEEE
Confidence 46679999999998765 7788888876432 555543
No 105
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.96 E-value=0.36 Score=41.47 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=23.0
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccC
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNH 65 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~ 65 (615)
.+..||.|.|||.+.++ +.|+++|+++.
T Consensus 6 ~~~~~lfVgnLp~~~te---~~L~~~F~~~G 33 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDE---DEITASFRRFG 33 (114)
T ss_dssp SCCCCEEEECCCTTCCH---HHHHHHTTTTC
T ss_pred CCCCEEEEcCCCCCCCH---HHHHHHHHhcC
Confidence 35679999999998765 78999998764
No 106
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=91.94 E-value=1.1 Score=37.27 Aligned_cols=71 Identities=10% Similarity=0.139 Sum_probs=51.2
Q ss_pred CCCcceEEEecCCC-CCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcc
Q 048588 34 QPDQFTVLVRNVPP-DPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSM 112 (615)
Q Consensus 34 ~~~~~TVlV~~IP~-~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~ 112 (615)
.+...||.|.|||. +.++ +.|+++|+.+ |.+.++.+.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~---~~L~~~F~~~--G~v~~v~i~------------------------------------- 56 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSK---EDLFRIFSPY--GHIMQINIK------------------------------------- 56 (97)
T ss_dssp CCTTCEEEEESCCSSCCCH---HHHHHHHGGG--SCEEEEEEC-------------------------------------
T ss_pred CCCCCEEEEeCCCcccCCH---HHHHHHHHhc--CCEEEEEEe-------------------------------------
Confidence 35678999999997 8765 7889999876 446555440
Q ss_pred cccccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 113 KTGFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 113 r~g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
+=.|||+|.+..+|..|.+.+... +...+.++.|
T Consensus 57 ---------------------------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 57 ---------------------------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp ---------------------------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred ---------------------------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 017999999999999999876543 2344556655
No 107
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=91.48 E-value=0.66 Score=46.11 Aligned_cols=40 Identities=23% Similarity=0.242 Sum_probs=31.4
Q ss_pred CCCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecC
Q 048588 34 QPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNA 78 (615)
Q Consensus 34 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~ 78 (615)
.+.+.+|.|+|+|.+.++ +.|+++|+.. |.+.++.+.+|.
T Consensus 92 ~~~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~i~~~~i~~~~ 131 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQ---QQFEELVRPF--GSLERCFLVYSE 131 (284)
T ss_dssp CCCSCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECT
T ss_pred cCCCCEEEEcCCCCcCCH---HHHHHHHHhc--CCeeEEEEEeeC
Confidence 356679999999998765 7899999876 457778777764
No 108
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.22 E-value=0.7 Score=40.06 Aligned_cols=78 Identities=13% Similarity=0.055 Sum_probs=54.2
Q ss_pred CcceEEEecCCCC-CCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 048588 36 DQFTVLVRNVPPD-PDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKT 114 (615)
Q Consensus 36 ~~~TVlV~~IP~~-~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~ 114 (615)
...+|.|+|||.+ .++ +.|+++|+.+ |.+.++.+.. . |
T Consensus 24 p~~~l~V~NLp~~~~te---~~L~~lF~~f--G~V~~v~i~~----------------------------~---k----- 62 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSD---SAVLKLAEPY--GKIKNYILMR----------------------------M---K----- 62 (112)
T ss_dssp CCCEEEEESCCCSSCCS---HHHHTTTTTT--SCCSEEEEET----------------------------T---T-----
T ss_pred CCCEEEEeCCCCccCCH---HHHHHHHHhc--CCEEEEEEec----------------------------C---C-----
Confidence 4569999999997 766 7889999876 4566665530 0 0
Q ss_pred cccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcC----CCCCcceeecCCCCCcce
Q 048588 115 GFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQT----RNPTLWLTDWAPEPRDVY 180 (615)
Q Consensus 115 g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~----~~p~~~~v~~APeP~DIi 180 (615)
| .|||+|.+..+|..|.+.+.. -+...+.|+.|-...++.
T Consensus 63 ---g-----------------------~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~~~ 106 (112)
T 1x4f_A 63 ---S-----------------------QAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLV 106 (112)
T ss_dssp ---T-----------------------EEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSSSS
T ss_pred ---C-----------------------EEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccccccc
Confidence 0 699999999999999886532 233456777765554443
No 109
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=91.07 E-value=1.1 Score=42.04 Aligned_cols=77 Identities=9% Similarity=0.108 Sum_probs=53.3
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccc
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTG 115 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~g 115 (615)
...+|.|+|||.+.++ +.|+++|+.+ |.+.++.+..|.. ..+
T Consensus 124 ~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~~~---------------------------~g~------ 165 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSD---DDIKSVFEAF--GKIKSATLARDPT---------------------------TGK------ 165 (216)
T ss_dssp TSCEEEEECCCTTCCH---HHHHHHHTTS--SCEEEEEEEECTT---------------------------TCC------
T ss_pred CCcEEEEeCCCCcCCH---HHHHHHHhcc--CCeeEEEEEecCC---------------------------CCC------
Confidence 4469999999998765 7899999876 4677777765420 000
Q ss_pred ccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCCC--CCcceeecC
Q 048588 116 FLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTRN--PTLWLTDWA 173 (615)
Q Consensus 116 ~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~~--p~~~~v~~A 173 (615)
..=.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 166 -----------------------~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 166 -----------------------HKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp -----------------------EEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred -----------------------cCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 01179999999999999998775432 334555554
No 110
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=90.80 E-value=1.1 Score=36.72 Aligned_cols=38 Identities=24% Similarity=0.197 Sum_probs=28.1
Q ss_pred EEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCCCCcc
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPEPRDV 179 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APeP~DI 179 (615)
.|||+|.+..+|..|.+.+... +...+.++.|-.+.+.
T Consensus 53 ~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 92 (97)
T 1nu4_A 53 QAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDI 92 (97)
T ss_dssp CEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCTH
T ss_pred EEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCCcc
Confidence 6999999999999998876543 3345677777555543
No 111
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.76 E-value=0.95 Score=38.47 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=24.3
Q ss_pred EEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
.|||+|.+..+|..|.+.+... +...+.++.|
T Consensus 69 ~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 69 QAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp EEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred EEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 7999999999999998876543 2345666665
No 112
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=90.53 E-value=0.86 Score=42.55 Aligned_cols=34 Identities=21% Similarity=0.181 Sum_probs=25.1
Q ss_pred CcceEEEecCCC-CCCccHHHHHHHHhcccCCCceEEEEE
Q 048588 36 DQFTVLVRNVPP-DPDESVTQLVEHFFLVNHPDHYLTHQV 74 (615)
Q Consensus 36 ~~~TVlV~~IP~-~~~~~~~~~l~~~F~~~~p~~v~~v~i 74 (615)
+..||.|+|||. +.++ +.|+++|+.+. .+.++.+
T Consensus 2 ~~~~l~v~nlp~~~~~~---~~l~~~F~~~G--~i~~v~i 36 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTP---QSLFILFGVYG--DVQRVKI 36 (198)
T ss_dssp CCCEEEEECCCSSSCCH---HHHHHHHHTTC--CCSEEEC
T ss_pred CCcEEEEeCCCcccCCH---HHHHHHHHhcC--CEEEEEE
Confidence 457999999999 7775 78899998763 3544443
No 113
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=90.50 E-value=0.54 Score=40.59 Aligned_cols=33 Identities=6% Similarity=-0.036 Sum_probs=24.6
Q ss_pred EEEEEecCHHHHHHHHHhhcCC--CCCcceeecCC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAP 174 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~AP 174 (615)
.|||+|++.++|..|.+.+... +...+.|+.|.
T Consensus 69 faFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 69 TGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 6999999999999998876543 33456666663
No 114
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=90.46 E-value=0.88 Score=44.40 Aligned_cols=80 Identities=8% Similarity=-0.022 Sum_probs=54.5
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccc
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTG 115 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~g 115 (615)
...||.|.|||.+.++ +.|+++|+.+....+.++.+.+|-. +.+
T Consensus 67 ~~~~lfVgnL~~~~te---~~L~~~F~~~G~~~v~~v~i~~d~~-------------------------------tg~-- 110 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTD---EDLTEAVHSLGVNDILEIKFFENRA-------------------------------NGQ-- 110 (229)
T ss_dssp --CEEEEESCCTTCCH---HHHHHHHHTTTCCCEEEEEEEECTT-------------------------------TCC--
T ss_pred CccEEEEeCCCCCCCH---HHHHHHHHHHCCcceEEEEEEecCC-------------------------------CCc--
Confidence 4568999999998765 7899999877433688888776531 000
Q ss_pred ccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecCC
Q 048588 116 FLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAP 174 (615)
Q Consensus 116 ~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~AP 174 (615)
.+=.|||+|.+..+|..|.+.+... +...+.|+.|-
T Consensus 111 -----------------------skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~ 148 (229)
T 3q2s_C 111 -----------------------SKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVN 148 (229)
T ss_dssp -----------------------EEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECC
T ss_pred -----------------------cceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECC
Confidence 0117999999999999998866533 23345666653
No 115
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=89.78 E-value=0.38 Score=43.94 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=24.7
Q ss_pred EEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
.|||+|.+..+|..|.+.+... +...+.++.|
T Consensus 138 ~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 138 IAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp EEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred EEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 8999999999999999876543 2345667666
No 116
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=89.40 E-value=2.4 Score=40.43 Aligned_cols=35 Identities=11% Similarity=0.103 Sum_probs=26.4
Q ss_pred CcceEEEecCC-CCCCccHHHHHHHHhcccCCCceEEEEEE
Q 048588 36 DQFTVLVRNVP-PDPDESVTQLVEHFFLVNHPDHYLTHQVV 75 (615)
Q Consensus 36 ~~~TVlV~~IP-~~~~~~~~~~l~~~F~~~~p~~v~~v~i~ 75 (615)
+..||.|.|+| .+.++ +.|+++|+.+ |.+.++.+.
T Consensus 3 ~~~~l~V~nL~~~~~~~---~~L~~~F~~~--G~v~~v~i~ 38 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNC---DRVFNVFCLY--GNVEKVKFM 38 (205)
T ss_dssp CCSEEEEECCCTTTCCH---HHHHHHHTTT--SCEEEEEEC
T ss_pred CCCEEEEeCCCcccCCH---HHHHHHHHhc--CCeEEEEEe
Confidence 45699999999 56665 7899999876 467776654
No 117
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=89.36 E-value=2.4 Score=35.96 Aligned_cols=83 Identities=12% Similarity=0.032 Sum_probs=56.2
Q ss_pred CcceEEEecCCC--CCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccc
Q 048588 36 DQFTVLVRNVPP--DPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMK 113 (615)
Q Consensus 36 ~~~TVlV~~IP~--~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r 113 (615)
...+|.++|+.. +.++.+.+.|++.|+++ |.+.++.+..|-+. ..++
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~--G~V~~v~i~~~~~~--------------------------~~~~--- 55 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKY--GKVGKCVIFEIPGA--------------------------PDDE--- 55 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGG--SCEEEEEEEECSSC--------------------------CTTT---
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhc--CCEEEEEEecCCCC--------------------------CCCC---
Confidence 345999999974 33445678999999877 56888887765310 0000
Q ss_pred ccccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCC
Q 048588 114 TGFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPE 175 (615)
Q Consensus 114 ~g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APe 175 (615)
.-.|||+|.+..+|..|.+.+..+ ....+.++.|++
T Consensus 56 --------------------------~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 56 --------------------------AVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp --------------------------SEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred --------------------------cEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 117999999999999999987654 334566777754
No 118
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=88.68 E-value=2.1 Score=35.32 Aligned_cols=31 Identities=6% Similarity=-0.075 Sum_probs=23.3
Q ss_pred EEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
.|||+|.+..+|..|.+ +... +...+.++.|
T Consensus 60 ~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 60 FGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp EEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred EEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 79999999999999998 5433 2345666665
No 119
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=88.37 E-value=0.63 Score=37.31 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=29.1
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
++.+||.|.|||.+.++ +.|+++|+.. |.+.++.+.+|
T Consensus 4 ~~~~~l~v~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 41 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITT---AAIAAAFAPF--GRISDARVVKD 41 (87)
T ss_dssp --CEEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCceEEEEeCCCCCCCH---HHHHHHHHhc--CCEeEEEEEec
Confidence 46789999999998765 7899999876 45777777654
No 120
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=87.76 E-value=0.81 Score=36.76 Aligned_cols=39 Identities=10% Similarity=0.170 Sum_probs=30.9
Q ss_pred CCCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 34 QPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 34 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
..+..||.|.|||.+.++ +.|+++|+.. |.+.++.+.+|
T Consensus 8 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 46 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSK---KDLKDYFTKF--GEVVDCTIKMD 46 (87)
T ss_dssp CSCTTEEEEECCCTTCCH---HHHHHHHTTT--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEeec
Confidence 346679999999998765 7899999876 46778877755
No 121
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=87.45 E-value=2.2 Score=42.47 Aligned_cols=99 Identities=17% Similarity=0.225 Sum_probs=66.9
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKT 114 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~ 114 (615)
.+..||.|+|||.+.++ +.|+++|+.. |.+.++.+..|.+ .
T Consensus 39 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~~---------------------------~------- 79 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQ---NKVYKYFKHC--GPIIHVDVADSLK---------------------------K------- 79 (292)
T ss_dssp ---CEEEEEEECTTCCH---HHHHHHHGGG--SCEEEEEEEECTT---------------------------S-------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEECCC---------------------------C-------
Confidence 35679999999998765 7899999887 4577777664320 0
Q ss_pred cccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCCCCcceecccccChhhHH
Q 048588 115 GFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPEPRDVYWDNLAIPFVSLT 192 (615)
Q Consensus 115 g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APeP~DIiW~NL~~~~~~r~ 192 (615)
..=.|||+|.+..+|..|.+ +... +...+.+++++ ..-|+=.||.....+..
T Consensus 80 ------------------------~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~~-~~~l~v~nlp~~~t~~~ 133 (292)
T 2ghp_A 80 ------------------------NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLT-ECTLWMTNFPPSYTQRN 133 (292)
T ss_dssp ------------------------SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEECC-SCEEEEECCCTTCCHHH
T ss_pred ------------------------CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEECC-CCEEEEECCCCCCCHHH
Confidence 01179999999999999985 3222 22345566653 56688888887777766
Q ss_pred HHHHHH
Q 048588 193 IRRLII 198 (615)
Q Consensus 193 ~R~~~~ 198 (615)
++.++.
T Consensus 134 l~~~f~ 139 (292)
T 2ghp_A 134 IRDLLQ 139 (292)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
No 122
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.38 E-value=0.71 Score=38.92 Aligned_cols=40 Identities=13% Similarity=0.244 Sum_probs=33.7
Q ss_pred EEEEEecCHHHHHHHHHhhcCCC--CCcceeecCCCCCccee
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTRN--PTLWLTDWAPEPRDVYW 181 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~~--p~~~~v~~APeP~DIiW 181 (615)
.|||.|.++.+|+.|.+.++... ...++++.|+..+|++=
T Consensus 48 ~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~~~ 89 (96)
T 2diu_A 48 SAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRELCE 89 (96)
T ss_dssp CEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCCCC
T ss_pred EEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcceeE
Confidence 69999999999999998777653 45788999999999863
No 123
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=87.36 E-value=0.9 Score=37.11 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=30.5
Q ss_pred CCCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 34 QPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 34 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
....+||.|.|||.+.++ +.|+++|+.. +.+.++.+.+|
T Consensus 13 ~~~~~~l~v~nlp~~~~~---~~l~~~F~~~--G~i~~v~i~~~ 51 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVRE---EILYELFLQA--GPLTKVTICKD 51 (95)
T ss_dssp TTGGGEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCH---HHHHHHHHhc--CCEEEEEEEEC
Confidence 346689999999998765 7899999887 45777777654
No 124
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.29 E-value=0.59 Score=41.15 Aligned_cols=47 Identities=23% Similarity=0.254 Sum_probs=33.6
Q ss_pred HHHHHcCCCCCCCcceEEEecCCCCCCccHHHHHHHHhcccCC--CceEEEEEEec
Q 048588 24 RLHFLASEHRQPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHP--DHYLTHQVVSN 77 (615)
Q Consensus 24 R~~~l~s~~~~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p--~~v~~v~i~~d 77 (615)
+++++.+ .+.++|.|+|||.+.++ +.|++||+.+.+ +.+.++.+++|
T Consensus 14 ~~~~~~~----~~~~~v~V~nLp~~~te---~dl~~~F~~~g~v~g~v~~v~i~~d 62 (123)
T 2dha_A 14 VAQFLSK----ENQVIVRMRGLPFTATA---EEVVAFFGQHCPITGGKEGILFVTY 62 (123)
T ss_dssp HHHHHHC----CSCCEEEECSCCTTCCH---HHHHHHHHTTSCCTTGGGGEEEEEC
T ss_pred HHhhccC----CCCCEEEEeCCCCCCCH---HHHHHHHHhhCCccCCcceEEEEEC
Confidence 4556643 45679999999998775 889999988754 33456666643
No 125
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=86.94 E-value=2.3 Score=40.39 Aligned_cols=74 Identities=18% Similarity=0.208 Sum_probs=52.5
Q ss_pred cceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccccc
Q 048588 37 QFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTGF 116 (615)
Q Consensus 37 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~g~ 116 (615)
..+|.|.|+|.+.++ +.|+++|+.+ |.+.++.+.+|.+ +
T Consensus 103 ~~~l~v~nl~~~~t~---~~l~~~F~~~--G~i~~~~i~~d~~-------------------------------~----- 141 (213)
T 4f02_A 103 VGNIFIKNLDKSIDN---KALYDTFSAF--GNILSCKVVCDEN-------------------------------G----- 141 (213)
T ss_dssp TTEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEETT-------------------------------E-----
T ss_pred cccceECCcccccHH---HHHHHHHhhc--CCeEEEEeeccCC-------------------------------C-----
Confidence 458999999998765 7899999877 4677777765420 0
Q ss_pred cCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 117 LGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 117 ~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
.+=.|||+|.+..+|..|.+.+... +...+.|+.|
T Consensus 142 ----------------------~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a 178 (213)
T 4f02_A 142 ----------------------SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 178 (213)
T ss_dssp ----------------------EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ----------------------CceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 0116999999999999998876543 2234556555
No 126
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.44 E-value=0.87 Score=36.98 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=29.4
Q ss_pred CCCCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 33 RQPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 33 ~~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
...+.++|.|.|||.+.++ +.|+++|+.. .+.++.+.+|
T Consensus 6 ~~~~~~~l~v~nLp~~~t~---~~l~~~F~~~---~i~~v~i~~~ 44 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTE---KNVMEFLAPL---KPVAIRIVRN 44 (91)
T ss_dssp CCCCCCEEEEECCCSSCCH---HHHHHHHTTS---CCSEEEEEEC
T ss_pred CCCCccEEEEECCCCCCCH---HHHHHHHhhC---CceEEEEEEC
Confidence 3356789999999998765 7899999876 3556666643
No 127
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=85.16 E-value=2.9 Score=41.18 Aligned_cols=39 Identities=10% Similarity=0.059 Sum_probs=28.6
Q ss_pred CCcceEEEecCCCCCC------ccHHHHHHHHhcccCCCceEEEEEE
Q 048588 35 PDQFTVLVRNVPPDPD------ESVTQLVEHFFLVNHPDHYLTHQVV 75 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~------~~~~~~l~~~F~~~~p~~v~~v~i~ 75 (615)
.+..||.|.|||.+.+ +...+.|+++|+++ |.+.++.++
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f--G~I~~v~v~ 176 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL--GDIDRIRYV 176 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT--SCEEEEEEE
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHcc--CCEEEEEEE
Confidence 3557999999998642 12458899999877 567777665
No 128
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=85.14 E-value=0.97 Score=36.33 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=29.5
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
+.+||.|+|||.+.++ +.|+++|+.. |.+.++.+.+|
T Consensus 5 ~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 41 (89)
T 3ucg_A 5 DARSIYVGNVDYGATA---EELEAHFHGC--GSVNRVTILCD 41 (89)
T ss_dssp HHTEEEEESCCTTCCH---HHHHHHHGGG--CCEEEEEEEES
T ss_pred cCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEec
Confidence 4579999999998765 7899999876 46777777755
No 129
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=84.51 E-value=2.7 Score=45.16 Aligned_cols=77 Identities=18% Similarity=0.146 Sum_probs=53.6
Q ss_pred ceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccc
Q 048588 38 FTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTGFL 117 (615)
Q Consensus 38 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~g~~ 117 (615)
.||.|.|||...++ +.|.++|+.+ |.|.++.|+.|.. +.+
T Consensus 103 ~~lfV~nL~~~~te---~~L~~~F~~~--G~I~~v~i~~d~~-------------------------------tg~---- 142 (437)
T 3pgw_S 103 KTLFVARVNYDTTE---SKLRREFEVY--GPIKRIHMVYSKR-------------------------------SGK---- 142 (437)
T ss_pred CEEEEeCCCCCCCH---HHHHHHHHHc--CCeeEEEeeccCC-------------------------------CCC----
Confidence 69999999998765 7889999876 4577776664410 000
Q ss_pred CCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCC
Q 048588 118 GLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPE 175 (615)
Q Consensus 118 g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APe 175 (615)
..=.|||+|.+..+|..|.+.+... ....+.|+.|-.
T Consensus 143 ---------------------~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~ 181 (437)
T 3pgw_S 143 ---------------------PRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181 (437)
T ss_pred ---------------------ccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence 0017999999999999999876544 234566776643
No 130
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=84.46 E-value=7 Score=38.45 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=26.3
Q ss_pred CCcceEEEecCCCCCC-ccHHHHHHHHhcccCCCceEEEEEE
Q 048588 35 PDQFTVLVRNVPPDPD-ESVTQLVEHFFLVNHPDHYLTHQVV 75 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~-~~~~~~l~~~F~~~~p~~v~~v~i~ 75 (615)
....||.|+|||.+.+ +.+++.|.++|+.+ |.+.++.+.
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~--G~i~~v~~~ 46 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQF--GQILDILVS 46 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhcc--CCeEEEEEc
Confidence 3466999999999754 44555566888765 456655443
No 131
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.34 E-value=1.3 Score=37.49 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=30.4
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
.+..||.|.|+|.+.++ +.|+++|+.+ |.+.++.+.+|
T Consensus 9 ~~~~~lfV~~Lp~~~te---~~L~~~F~~~--G~v~~v~i~~d 46 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATL---DDIKEWLEDK--GQVLNIQMRRT 46 (103)
T ss_dssp SGGGCEEEECCCTTCCH---HHHHHHHHTS--SCEEEEEEECC
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHhhc--CCEEEEEEEEC
Confidence 45689999999998765 7899999876 46888877744
No 132
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=83.96 E-value=6.5 Score=36.11 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=20.2
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhccc
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVN 64 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~ 64 (615)
..+||.|.|||.+.++ +.|+++|+..
T Consensus 3 ~~~~l~V~nLp~~~te---~~l~~~F~~~ 28 (198)
T 2yh0_A 3 MARRLYVGNIPFGITE---EAMMDFFNAQ 28 (198)
T ss_dssp -CCEEEEESCCTTCCH---HHHHHHHHHH
T ss_pred ceeEEEEcCCCCCCCH---HHHHHHHHHH
Confidence 4579999999998765 6788888654
No 133
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=83.42 E-value=1.7 Score=36.36 Aligned_cols=39 Identities=13% Similarity=0.052 Sum_probs=30.1
Q ss_pred CCCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 34 QPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 34 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
....++|.|.|||.+.++ +.|+++|+.+ |.+.++.+.+|
T Consensus 26 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 64 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSD---ADIQELFAEF--GTLKKAAVHYD 64 (107)
T ss_dssp CCCSEEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEC
Confidence 345689999999998765 7889999876 45777777644
No 134
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=83.29 E-value=1.1 Score=36.73 Aligned_cols=39 Identities=13% Similarity=0.161 Sum_probs=28.8
Q ss_pred CCCCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEe
Q 048588 33 RQPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVS 76 (615)
Q Consensus 33 ~~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~ 76 (615)
..++..||.|.|+|.+.++ +.|+++|+++ |.+.++.+.+
T Consensus 7 ~~~~~~~l~V~~Lp~~~te---~~L~~~F~~~--G~i~~v~i~~ 45 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTA---EELQQFFCQY--GEVVDVFIPK 45 (89)
T ss_dssp ----CCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEECCS
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHhcc--CCEEEEEEee
Confidence 3457789999999998876 7899999876 4677776654
No 135
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.15 E-value=1.8 Score=36.53 Aligned_cols=38 Identities=13% Similarity=0.120 Sum_probs=29.4
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
....||.|.|||.+.++ +.|+++|+.+ +.+.++.+.+|
T Consensus 13 ~~~~~l~V~nlp~~~~~---~~l~~~f~~~--G~i~~~~i~~~ 50 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGW---KKLKEVFSMA--GVVVRADILED 50 (114)
T ss_dssp CCCSCEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEC
Confidence 45679999999998765 7899999876 46777776643
No 136
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.01 E-value=1.8 Score=34.46 Aligned_cols=36 Identities=19% Similarity=0.088 Sum_probs=28.3
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEE
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVV 75 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~ 75 (615)
+...||.|.|||.+.++ +.|+++|+.. |.+.++.+.
T Consensus 10 ~~~~~l~V~~l~~~~t~---~~l~~~f~~~--G~i~~~~~~ 45 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITE---TDLRNHFYQF--GEIRTITVV 45 (85)
T ss_dssp SSCCCEEEECCTTTSCH---HHHHHHHHTT--SCEEEEEEE
T ss_pred CCccEEEEcCCCCCCCH---HHHHHHHHhC--CCEeEEEEE
Confidence 45679999999998765 7889999876 357777766
No 137
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=82.89 E-value=4.8 Score=39.50 Aligned_cols=37 Identities=22% Similarity=0.234 Sum_probs=28.5
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
+..+|.|.|+|.+.++ +.|+++|+.+ |.+.++.+.+|
T Consensus 95 ~~~~l~v~nl~~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 131 (261)
T 3sde_A 95 HGAALTVKNLSPVVSN---ELLEQAFSQF--GPVEKAVVVVD 131 (261)
T ss_dssp CSSEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEE
T ss_pred cCCcccccCCCCCCCH---HHHHHHHHhc--CCeEEEEeeeC
Confidence 4569999999997765 7899999876 46777776654
No 138
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=81.60 E-value=6.6 Score=36.30 Aligned_cols=33 Identities=12% Similarity=0.129 Sum_probs=26.1
Q ss_pred EEEEEecCHHHHHHHHHhhcCCCC----CcceeecCC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTRNP----TLWLTDWAP 174 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~~p----~~~~v~~AP 174 (615)
.|||.|.+..+|..|.+.+....- ..++|+.|=
T Consensus 86 fAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 86 QALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred EEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 799999999999999998766532 456777763
No 139
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=81.52 E-value=1.9 Score=35.42 Aligned_cols=39 Identities=8% Similarity=0.121 Sum_probs=30.0
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecC
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNA 78 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~ 78 (615)
.+..||.|.|||.+.++ +.|+++|+.+ +.+.++.+.+|.
T Consensus 3 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~ 41 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTE---ETLKGVFSKV--GAIKSCTISKKK 41 (98)
T ss_dssp CCCCCEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecC
Confidence 34579999999998765 7889999876 457777777554
No 140
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.26 E-value=1.6 Score=36.34 Aligned_cols=38 Identities=5% Similarity=0.133 Sum_probs=30.1
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
...++|.|.|||.+.++ +.|+++|+.+ +.+.++.+.+|
T Consensus 14 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~v~~v~i~~~ 51 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQ---ETLRSYFSQY--GEVVDCVIMKD 51 (105)
T ss_dssp SSSSEECCBSCCTTCCH---HHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEeeC
Confidence 45689999999998765 7889999876 46777777754
No 141
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.10 E-value=1.8 Score=34.53 Aligned_cols=37 Identities=8% Similarity=0.199 Sum_probs=28.9
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
...||.|.|||.+.++ +.|+++|+.. |.+.++.+.+|
T Consensus 4 ~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~i~~~~i~~~ 40 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTD---QDLVKLCQPY--GKIVSTKAILD 40 (85)
T ss_dssp CCCEEEEESCCTTCCH---HHHHTTSTTT--SCEEEEEEECC
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEec
Confidence 4569999999998765 7899999876 46777776644
No 142
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.69 E-value=1.1 Score=38.28 Aligned_cols=36 Identities=14% Similarity=0.053 Sum_probs=26.9
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCce-EEEEEE
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHY-LTHQVV 75 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v-~~v~i~ 75 (615)
.+.+||.|.|||.+.++ +.|+++|+.. +.+ .++.+.
T Consensus 13 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--g~v~~~v~i~ 49 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITK---MDVLQFLEGI--PVDENAVHVL 49 (114)
T ss_dssp SCCCEEEEESCCTTSCH---HHHHHHTTTS--CCCSTTEEEC
T ss_pred CCccEEEEeCcCCcCCH---HHHHHHHHhC--CCcCCeEEEE
Confidence 45689999999998765 7899999876 344 344444
No 143
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.46 E-value=0.93 Score=38.88 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=27.8
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
+.++|.|+|||.+.++ +.|+++|+.. .+.++.+.+|
T Consensus 15 ~~~~v~V~nLp~~~te---~dl~~~F~~~---~v~~v~i~~d 50 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAME---NDVRDFFHGL---RVDAVHLLKD 50 (109)
T ss_dssp HHHEEEEECCCSSCCH---HHHHHHTTTS---CCCEEEECCC
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHhccC---CeeEEEEEEC
Confidence 4589999999998775 7899999876 3556666543
No 144
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.33 E-value=1.8 Score=36.67 Aligned_cols=77 Identities=16% Similarity=0.151 Sum_probs=53.0
Q ss_pred CCCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccc
Q 048588 34 QPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMK 113 (615)
Q Consensus 34 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r 113 (615)
..+..||.|.|||.+.++ +.|+++|+... .+.++.+.+|.+ ++
T Consensus 26 ~~~~~~l~V~nLp~~~te---~~l~~~F~~~G--~i~~v~i~~~~~-----------------------------~~--- 68 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRD---PDLRQMFGQFG--KILDVEIIFNER-----------------------------GS--- 68 (109)
T ss_dssp TTCCCEEEEESCCTTCCH---HHHHHHGGGTC--CCSCEEECCBTT-----------------------------BC---
T ss_pred CCCCCEEEEECCCCcCCH---HHHHHHHHhcC--CEEEEEEEECCC-----------------------------CC---
Confidence 345689999999998765 78999998773 465666554320 00
Q ss_pred ccccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 114 TGFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 114 ~g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
. | .|||+|.+..+|..|.+.+... +...+.|+.|
T Consensus 69 k---g-----------------------~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 69 K---G-----------------------FGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp T---T-----------------------EEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred c---e-----------------------EEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 0 1 6999999999999998866543 2334556555
No 145
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.20 E-value=2 Score=35.98 Aligned_cols=36 Identities=14% Similarity=0.109 Sum_probs=26.9
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEE-EEEE
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLT-HQVV 75 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~-v~i~ 75 (615)
.+.++|.|.|||.+.++ +.|+++|+.. +.+.+ +.+.
T Consensus 13 ~~~~~l~V~nLp~~~te---~~l~~~F~~~--G~v~~~v~i~ 49 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSK---EEIVQFFSGL--EIVPNGMTLP 49 (104)
T ss_dssp SCCCEEEEESCCTTCCH---HHHHHHTTTC--CEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCcceeEEEE
Confidence 46689999999998775 7899999876 34544 4444
No 146
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=80.15 E-value=1.9 Score=35.72 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=29.1
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEe
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVS 76 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~ 76 (615)
....||.|.|||.+.++ +.|+++|+.. |.+.++.+.+
T Consensus 7 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 43 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDE---TEIRSFFARY--GSVKEVKIIT 43 (102)
T ss_dssp EEEEEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCeEEEEEEE
Confidence 45679999999998765 7899999877 4577777664
No 147
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=79.88 E-value=5.1 Score=37.06 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=24.7
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEE
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQV 74 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i 74 (615)
...||.|+|+|.+.++ +.|+++|+...+ .+.++.+
T Consensus 119 ~~~~l~v~nl~~~~~~---~~l~~~f~~~G~-~v~~v~i 153 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSE---EDLKVLFSSNGG-VVKGFKF 153 (198)
T ss_dssp CCCEEEECCCCTTCCH---HHHHHHHHHTTS-CCCEEEE
T ss_pred CccEEEEeCCCCCCCH---HHHHHHHHHcCC-CceEEEE
Confidence 3679999999997665 778888876621 4544443
No 148
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.65 E-value=2.5 Score=35.36 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=28.3
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
...++|.|+|||.+.++ +.|+++|+...+ + ++.+++|
T Consensus 13 ~~~~~l~V~nLp~~~te---~~l~~~F~~~G~--~-~v~i~~d 49 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATE---NDIYNFFSPLNP--M-RVHIEIG 49 (102)
T ss_dssp SSSCEEEEESCCTTCCH---HHHHHSSCSCCC--S-EEEEEES
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHcCc--e-EEEEEEC
Confidence 35679999999998775 889999987642 3 6666643
No 149
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.50 E-value=2.1 Score=36.64 Aligned_cols=37 Identities=16% Similarity=0.083 Sum_probs=29.3
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEe
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVS 76 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~ 76 (615)
+...+|.|+|||.+.++ +.|+++|+.+ |.+.++.+..
T Consensus 14 ~~~~~LfV~nLp~~vte---~dL~~lF~~f--G~V~~v~i~~ 50 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTE---GEVISLGLPF--GKVTNLLMLK 50 (105)
T ss_dssp CCCCEEEECSCCTTSCH---HHHHHHHHHH--CCEEEEEEET
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEc
Confidence 45679999999998765 7788888877 4688887763
No 150
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=79.13 E-value=9.3 Score=36.50 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=50.9
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccCCC-ceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPD-HYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKT 114 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~-~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~ 114 (615)
...||.|+|+|.+.++ +.|+++|+.. | .+.++.+..+-
T Consensus 150 ~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~~i~~v~i~~~~------------------------------------ 188 (229)
T 2adc_A 150 PSATLHLSNIPPSVSE---EDLKVLFSSN--GGVVKGFKFFQKD------------------------------------ 188 (229)
T ss_dssp SCSEEEEECCCTTCCH---HHHHHHHHTT--SCCEEEEEECSSS------------------------------------
T ss_pred CCCEEEEeCCCccCCH---HHHHHHHHHc--CCCeeEEEEEECC------------------------------------
Confidence 3579999999997765 7889999876 4 56555543200
Q ss_pred cccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCCC---CCcceeecCC
Q 048588 115 GFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTRN---PTLWLTDWAP 174 (615)
Q Consensus 115 g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~~---p~~~~v~~AP 174 (615)
+=.|||.|.+..+|..|.+.+.... ...+.++.|-
T Consensus 189 -------------------------~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 189 -------------------------RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp -------------------------TTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred -------------------------CcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 0169999999999999998765432 3455566553
No 151
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=77.95 E-value=1.7 Score=33.69 Aligned_cols=34 Identities=6% Similarity=0.090 Sum_probs=25.3
Q ss_pred eEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 39 TVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 39 TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
||.|.|+|.+.++ +.|+++|+... .+.++.+.+|
T Consensus 2 ~l~v~nlp~~~t~---~~l~~~F~~~G--~v~~v~i~~~ 35 (77)
T 1uaw_A 2 KMFIGGLSWQTTQ---EGLREYFGQFG--EVKECLVMRD 35 (77)
T ss_dssp CEEEESCCSSCCS---HHHHHHHTTTS--CCCCEEEECC
T ss_pred EEEEeCCCCCCCH---HHHHHHHHhcC--CEEEEEEecC
Confidence 7999999998765 67899998763 4555655543
No 152
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=77.73 E-value=2.1 Score=36.24 Aligned_cols=38 Identities=5% Similarity=0.086 Sum_probs=28.2
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
.+..||.|.|||.+.++ +.|+++|+.+ |.+.++.+.+|
T Consensus 23 ~~~~~lfV~nLp~~~te---~~L~~~F~~~--G~i~~v~i~~~ 60 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQ---EGLREYFGQF--GEVKECLVMRD 60 (109)
T ss_dssp ---CCEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHcc--CCeEEEEEEEC
Confidence 35579999999998765 7899999876 46777776654
No 153
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=77.27 E-value=3.5 Score=34.82 Aligned_cols=37 Identities=14% Similarity=-0.034 Sum_probs=28.9
Q ss_pred CCCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEE
Q 048588 34 QPDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVV 75 (615)
Q Consensus 34 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~ 75 (615)
.+...+|.|+|+|.+.++ +.|++.|+.+ |.+.++.+.
T Consensus 18 ~~ps~~l~V~NLp~~~te---~~L~~lF~~f--G~V~~v~i~ 54 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVE---ADLVEALQEF--GPISYVVVM 54 (100)
T ss_dssp CCCCSEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHhcc--CCEEEEEEE
Confidence 345679999999998765 7889999876 567777664
No 154
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=77.09 E-value=2.1 Score=36.84 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=29.0
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCC-CceEEEEEEec
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHP-DHYLTHQVVSN 77 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p-~~v~~v~i~~d 77 (615)
.+.+||.|+|||.+.++ +.|+++|+.+.+ +.+.++.+.+|
T Consensus 15 ~~~~~l~V~nLp~~~te---~~l~~~F~~~G~~~~v~~v~i~~~ 55 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSI---EDVQNFLSDCTIHDGVAGVHFIYT 55 (118)
T ss_dssp CCCCEEEEESCCTTCCH---HHHHHHTTTSCBTTGGGGEEEEEC
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHHcCCccCceeEEEEEC
Confidence 35689999999998775 789999987643 12555666544
No 155
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.79 E-value=1.8 Score=34.86 Aligned_cols=35 Identities=17% Similarity=0.154 Sum_probs=27.1
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEE
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVV 75 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~ 75 (615)
...||.|.|||.+.++ +.|+++|+.+. .+.++.+.
T Consensus 4 ~~~~l~V~nLp~~~te---~~l~~~F~~~G--~i~~v~i~ 38 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTE---DELREFFSQYG--DVMDVFIP 38 (88)
T ss_dssp CCCEEEEESCCSSSCH---HHHHHHSTTTS--CCCEEECC
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHHcC--CeeEEEEe
Confidence 4579999999998765 78999998763 46666554
No 156
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.73 E-value=3.5 Score=34.70 Aligned_cols=36 Identities=14% Similarity=0.084 Sum_probs=28.2
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEE
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVV 75 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~ 75 (615)
+...+|.|+|+|.+.++ +.|+++|+.+ |.+.++.+.
T Consensus 13 ~p~~~l~V~nLp~~~te---~~L~~~F~~f--G~v~~v~i~ 48 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTE---TEVIALGLPF--GKVTNILML 48 (101)
T ss_dssp SCCSEEEEESCCTTCCH---HHHHHTTTTT--SCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEE
Confidence 35579999999998765 7899999876 467777665
No 157
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=76.02 E-value=2.7 Score=37.03 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=27.2
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceE--EEEEEe
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYL--THQVVS 76 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~--~v~i~~ 76 (615)
.+..+|.|+|||.+.++ +.|+++|+.+ + +. ++.+.+
T Consensus 40 ~~~~~lfVgnLp~~~te---~dL~~~F~~~--~-i~~~~v~i~~ 77 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTK---EEIVQFFSGL--E-IVPNGITLPV 77 (126)
T ss_dssp SSCCEEEEECCCTTCCH---HHHHHHTTTS--C-EEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHhcC--C-ceeeEEEEEE
Confidence 35689999999998776 8899999876 3 44 555553
No 158
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.52 E-value=3.3 Score=36.17 Aligned_cols=37 Identities=16% Similarity=0.083 Sum_probs=29.0
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEe
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVS 76 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~ 76 (615)
+...+|.|+|||.+.++ +.|+++|+.+ |.+.++.+..
T Consensus 29 ~ps~~LfVgNLp~~vte---~dL~~lF~~f--G~V~~v~i~~ 65 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTE---GEVISLGLPF--GKVTNLLMLK 65 (119)
T ss_dssp SCCSEEEEESCCTTCCH---HHHHHHHTTT--SCCCEEEEEG
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEeC
Confidence 35679999999998765 7899999876 4677777663
No 159
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=75.25 E-value=1.7 Score=36.69 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=23.7
Q ss_pred CCCcceEEEecCCCCCCccHHHHHHHHhcccC
Q 048588 34 QPDQFTVLVRNVPPDPDESVTQLVEHFFLVNH 65 (615)
Q Consensus 34 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~ 65 (615)
..+.++|.|.|||.+.++ +.|+++|+...
T Consensus 8 ~~~~~~l~V~nLp~~~te---~~l~~~F~~~g 36 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTM---EDVLNFFSDCR 36 (107)
T ss_dssp CSSCCEEEEECCCSSCCS---HHHHHHTTTSC
T ss_pred CCCccEEEEeCCCCCCCH---HHHHHHHHhcC
Confidence 346789999999998766 78999998753
No 160
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.18 E-value=2.8 Score=35.42 Aligned_cols=36 Identities=17% Similarity=0.213 Sum_probs=28.1
Q ss_pred cceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 37 QFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 37 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
.+||.|.|||.+.++ +.|+++|+.+ |.+.++.+.+|
T Consensus 25 ~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 60 (114)
T 2cq4_A 25 ARTVFCMQLAARIRP---RDLEDFFSAV--GKVRDVRIISD 60 (114)
T ss_dssp HTEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEECCS
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhC--CCEeEEEEEec
Confidence 369999999998765 7899999876 46777776543
No 161
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=73.12 E-value=3.2 Score=35.06 Aligned_cols=35 Identities=6% Similarity=-0.047 Sum_probs=28.4
Q ss_pred CcceEEEecCCC-CCCccHHHHHHHHhcccCCCceEEEEEE
Q 048588 36 DQFTVLVRNVPP-DPDESVTQLVEHFFLVNHPDHYLTHQVV 75 (615)
Q Consensus 36 ~~~TVlV~~IP~-~~~~~~~~~l~~~F~~~~p~~v~~v~i~ 75 (615)
...+|.|+|||. +.++ +.|+++|+.+ |.+.++.++
T Consensus 14 p~~~l~V~nLp~~~~te---~dL~~lF~~f--G~V~~v~i~ 49 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLR---YQLLQLVEPF--GVISNHLIL 49 (102)
T ss_dssp CCCEEEEESCCCSSSHH---HHHHTTTGGG--SCEEEEEEC
T ss_pred CCCEEEEeCCCCCcCCH---HHHHHHHHhc--CCEEEEEEE
Confidence 457999999999 7765 7899999877 568888765
No 162
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.69 E-value=4.4 Score=34.06 Aligned_cols=33 Identities=24% Similarity=0.229 Sum_probs=25.0
Q ss_pred EEEEEecCHHHHHHHHHhhcCCCCCcceeecCC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTRNPTLWLTDWAP 174 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~~p~~~~v~~AP 174 (615)
.|||+|.+..+|..|.+.........+.|++|-
T Consensus 56 faFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~ 88 (100)
T 2d9o_A 56 TAVVEFATVKAAELAVQNEVGLVDNPLKISWLE 88 (100)
T ss_dssp EEEEEESCHHHHHHHHHTCCBCSSSBCEEECSS
T ss_pred EEEEEECCHHHHHHHHHhcCCCCCCeEEEEEcc
Confidence 799999999999999887544344456677663
No 163
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=72.45 E-value=1.4 Score=34.15 Aligned_cols=31 Identities=16% Similarity=0.305 Sum_probs=22.8
Q ss_pred eEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEE
Q 048588 39 TVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQV 74 (615)
Q Consensus 39 TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i 74 (615)
||.|.|||.+.++ +.|+++|+... .+.++.+
T Consensus 1 ~l~v~nLp~~~t~---~~l~~~F~~~G--~i~~v~i 31 (75)
T 1iqt_A 1 KIFVGGLSPDTPE---EKIREYFGGFG--EVESIEL 31 (75)
T ss_dssp CEEESCCCSSCCH---HHHHHHHHHHS--CCSEECC
T ss_pred CEEEeCCCCCCCH---HHHHHHHHhcC--CeEEEEE
Confidence 6899999998765 78888998764 3444443
No 164
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=72.29 E-value=3 Score=37.20 Aligned_cols=40 Identities=15% Similarity=0.123 Sum_probs=29.0
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCC-ceEEEEEEec
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPD-HYLTHQVVSN 77 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~-~v~~v~i~~d 77 (615)
.+.++|.|+|||.+.++ +.|+++|+...+- .+.++.+.+|
T Consensus 42 ~~~~~lfVgnLp~~~te---~dL~~~F~~~G~v~~v~~v~i~~d 82 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSV---EDVQNFLSDCTIHDGAAGVHFIYT 82 (136)
T ss_dssp CTTCEEEEESCCTTCCH---HHHHHHTTTCCCSSSSTTEEEEEC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHhCCcCceeEEEEEEC
Confidence 35689999999998775 7899999876431 1455666644
No 165
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.15 E-value=3.6 Score=34.87 Aligned_cols=36 Identities=6% Similarity=0.135 Sum_probs=28.0
Q ss_pred cceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 37 QFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 37 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
..+|.|.|||.+.++ +.|+++|+.+ +.+.++.+.+|
T Consensus 27 ~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~ 62 (116)
T 1x4b_A 27 FRKLFIGGLSFETTE---ESLRNYYEQW--GKLTDCVVMRD 62 (116)
T ss_dssp HTEEEEECCTTCCCH---HHHHHHHTSS--CCCSEEEEECC
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEEC
Confidence 379999999998765 7899999876 35667776654
No 166
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=70.83 E-value=3.5 Score=35.38 Aligned_cols=36 Identities=19% Similarity=0.148 Sum_probs=28.9
Q ss_pred cceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 37 QFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 37 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
.+||.|.|||.+.++ +.|+++|+.+ |.+.++.+.+|
T Consensus 36 ~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 71 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTA---QDLEAHFSSC--GSINRITILCD 71 (124)
T ss_dssp HTEEEEEEECTTCCH---HHHHHHHHTT--SCEEEEEEEEE
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEec
Confidence 479999999998765 7889999876 46777877754
No 167
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=68.97 E-value=2.3 Score=32.89 Aligned_cols=31 Identities=13% Similarity=0.173 Sum_probs=22.7
Q ss_pred eEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEE
Q 048588 39 TVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQV 74 (615)
Q Consensus 39 TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i 74 (615)
+|.|.|||.+.++ +.|+++|+... .+.++.+
T Consensus 1 ~l~v~nlp~~~t~---~~l~~~F~~~G--~i~~v~i 31 (75)
T 2mss_A 1 KIFVGGLSVNTTV---EDVKHYFEQFG--KVDDAML 31 (75)
T ss_dssp CEEEECCCSSCCH---HHHHHHHHTTS--CCSEECC
T ss_pred CEEEecCCCCCCH---HHHHHHHHhcC--CEEEEEE
Confidence 4789999998765 78899998763 4545443
No 168
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=68.02 E-value=4.3 Score=34.20 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=25.4
Q ss_pred EEEEEecCHHHHHHHHHhhcCC--CCCcceeecCC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAP 174 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~AP 174 (615)
.|||+|.+..+|..|.+.+... +.....++.+|
T Consensus 70 ~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 70 NVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred EEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence 8999999999999999887654 23345666665
No 169
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=67.34 E-value=9.2 Score=31.78 Aligned_cols=79 Identities=11% Similarity=0.172 Sum_probs=54.0
Q ss_pred cceEEEecCCCCCCcc---HHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccc
Q 048588 37 QFTVLVRNVPPDPDES---VTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMK 113 (615)
Q Consensus 37 ~~TVlV~~IP~~~~~~---~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r 113 (615)
..||.|.|||.+.++. ..+.|+++|+... .+.++.+..+. .++
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G--~v~~v~i~~~~-----------------------------g~~--- 60 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFG--KITNDFYPEED-----------------------------GKT--- 60 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGS--CEEEEECCCBT-----------------------------TBS---
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCC--CEEEEEeeCCC-----------------------------CCe---
Confidence 4699999999976543 5688999998873 56665433110 011
Q ss_pred ccccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCC-cceeecCCC
Q 048588 114 TGFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPT-LWLTDWAPE 175 (615)
Q Consensus 114 ~g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~-~~~v~~APe 175 (615)
. | .|||+|.+..+|..|.+.+... ... .+.|+.|-+
T Consensus 61 ~---G-----------------------~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 61 K---G-----------------------YIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTD 99 (105)
T ss_dssp C---C-----------------------EEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCC
T ss_pred e---e-----------------------EEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcch
Confidence 0 1 6999999999999999876543 233 567777754
No 170
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=67.21 E-value=2.7 Score=37.70 Aligned_cols=36 Identities=17% Similarity=0.197 Sum_probs=26.8
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEe
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVS 76 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~ 76 (615)
...++|.|+|||.+.++ +.|+++|+.+. +.++.+++
T Consensus 44 ~~~~~lfV~nLp~~~te---~dL~~~F~~~G---i~~v~i~~ 79 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATE---NDIYNFFSPLN---PVRVHIEI 79 (139)
T ss_dssp -CCCCEECCSCCTTCCH---HHHHHHHCSCC---CSEEECCC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhcC---CeEEEEEE
Confidence 35679999999998775 88999998764 23555543
No 171
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=67.10 E-value=7.1 Score=30.64 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=24.8
Q ss_pred ceEEEecCCCCCCcc---HHHHHHHHhcccCCCceEEEE
Q 048588 38 FTVLVRNVPPDPDES---VTQLVEHFFLVNHPDHYLTHQ 73 (615)
Q Consensus 38 ~TVlV~~IP~~~~~~---~~~~l~~~F~~~~p~~v~~v~ 73 (615)
.||.|.|||.+.++. ..+.|+++|+... .+.++.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G--~i~~v~ 38 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFG--KITNDF 38 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTC--CEEEEE
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcC--CeEEEE
Confidence 589999999976432 3578999998763 466654
No 172
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=66.66 E-value=8.8 Score=33.87 Aligned_cols=38 Identities=21% Similarity=0.381 Sum_probs=29.5
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
....+|.|+|+|.+.++ +.|+++|+.+ |.+.++.+.+|
T Consensus 85 ~~~~~l~v~nl~~~~t~---~~l~~~f~~~--G~i~~~~i~~~ 122 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDD---ETLRNAFKDF--PSYLSGHVMWD 122 (166)
T ss_dssp TTCEEEEEESCCTTCCH---HHHHHHHTTS--TTEEEEEEEEC
T ss_pred CCCceEEECCCCCCCCH---HHHHHHHhcc--CCeeEEEEEec
Confidence 35679999999998765 7889999776 46777777654
No 173
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.63 E-value=6.3 Score=33.56 Aligned_cols=34 Identities=26% Similarity=0.408 Sum_probs=26.8
Q ss_pred cceEEEecCCCCCCccHHHHHHHHhcc---cCCCceEEEE
Q 048588 37 QFTVLVRNVPPDPDESVTQLVEHFFLV---NHPDHYLTHQ 73 (615)
Q Consensus 37 ~~TVlV~~IP~~~~~~~~~~l~~~F~~---~~p~~v~~v~ 73 (615)
..+|.|+|+|++.++ +.|+-||++ ...|.+.+++
T Consensus 8 ~~~I~V~~lPp~~~~---e~L~LYFEn~rrsGGG~V~~v~ 44 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPD---ELLTLYFENRRRSGGGPVLSWQ 44 (104)
T ss_dssp CCEEEEESCCTTSCH---HHHHHHHHCTTTTCCCCEEEEE
T ss_pred ccEEEEECCCCCCCh---hHheEEEeCCCcCCCceeeEEE
Confidence 459999999998775 789999987 4566777664
No 174
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=66.55 E-value=9.7 Score=33.59 Aligned_cols=55 Identities=15% Similarity=0.176 Sum_probs=37.3
Q ss_pred EEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCC------CCcceecccccChhhHHHHHH
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPE------PRDVYWDNLAIPFVSLTIRRL 196 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APe------P~DIiW~NL~~~~~~r~~R~~ 196 (615)
.|||+|.+..+|..|.+.+... ....+.++.|.. ...++-.||.....+..++.+
T Consensus 46 ~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~ 108 (167)
T 1fxl_A 46 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQL 108 (167)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHH
Confidence 8999999999999999866543 223455555543 234777888776666555554
No 175
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.26 E-value=6.3 Score=33.32 Aligned_cols=42 Identities=24% Similarity=0.106 Sum_probs=31.0
Q ss_pred EEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCCCCcceecc
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPEPRDVYWDN 183 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APeP~DIiW~N 183 (615)
.|||+|.+..+|..|.+.+... +...+.++.|.+..|.-+..
T Consensus 66 ~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~ 109 (112)
T 2dit_A 66 VASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQSGP 109 (112)
T ss_dssp EEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCCSSCCC
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCcccCC
Confidence 7999999999999999877544 34456778876666654443
No 176
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=65.65 E-value=4.3 Score=35.38 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=22.3
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccC
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNH 65 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~ 65 (615)
...||.|.|||.+.++ +.|+++|+.+.
T Consensus 22 ~~~~lfV~nL~~~~te---~~L~~~F~~~G 48 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTM---DSILGALAPYA 48 (131)
T ss_dssp CCCEEEECSCCTTCCS---HHHHHHHGGGC
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHhC
Confidence 4569999999998766 78899998774
No 177
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=64.95 E-value=6.9 Score=30.93 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=20.9
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhccc
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVN 64 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~ 64 (615)
+.+||.|.|||.+.++ +.|+++|+..
T Consensus 5 ~~~~l~V~nLp~~~t~---~~l~~~F~~~ 30 (87)
T 2hzc_A 5 SARRLYVGNIPFGITE---EAMMDFFNAQ 30 (87)
T ss_dssp GGGEEEEESCCTTCCH---HHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHH
Confidence 5679999999998765 6778888765
No 178
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=63.80 E-value=7.5 Score=36.52 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=29.1
Q ss_pred cceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 37 QFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 37 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
.+||.|.|+|.+.++ +.|+++|+.. |.+.++.+.+|
T Consensus 109 ~~~l~V~nLp~~~t~---~~L~~~F~~~--G~v~~v~i~~~ 144 (193)
T 2voo_A 109 NRSVYIKGFPTDATL---DDIKEWLEDK--GQVLNIQMRRT 144 (193)
T ss_dssp HTEEEEECCCTTCCH---HHHHHHHTTS--CCEEEEEEEEC
T ss_pred cCEEEecCCCCcCCH---HHHHHHHhcC--CCEEEEEEEEC
Confidence 479999999998765 7899999876 45888887754
No 179
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=62.43 E-value=11 Score=33.72 Aligned_cols=37 Identities=5% Similarity=0.108 Sum_probs=28.7
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
...+|.|+|+|.+.++ +.|+++|+.+ |.+.++.+.+|
T Consensus 94 ~~~~l~v~nl~~~~t~---~~l~~~F~~~--G~i~~v~~~~~ 130 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTE---NDIRVMFSSF--GQIEECRILRG 130 (175)
T ss_dssp GGSEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCeEEEcCCCCcCCH---HHHHHHHHhC--CCEEEEEEEEC
Confidence 4579999999998765 7899999876 35777776643
No 180
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=61.91 E-value=12 Score=33.02 Aligned_cols=55 Identities=15% Similarity=0.206 Sum_probs=38.0
Q ss_pred EEEEEecCHHHHHHHHHhhcCC--CCCcceeecCC------CCCcceecccccChhhHHHHHH
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAP------EPRDVYWDNLAIPFVSLTIRRL 196 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~AP------eP~DIiW~NL~~~~~~r~~R~~ 196 (615)
.|||+|.+..+|..|.+.+... +...+.+++|. .+.-|+-.||.....+..++.+
T Consensus 47 ~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~ 109 (168)
T 1b7f_A 47 YAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTI 109 (168)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHh
Confidence 7999999999999998765443 22344555543 3455888888877666665554
No 181
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=61.26 E-value=9.3 Score=34.93 Aligned_cols=37 Identities=11% Similarity=0.269 Sum_probs=29.4
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
...+|.|+|||.+.++ +.|+++|+.+ |.+.++.+.+|
T Consensus 103 ~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 139 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEE---HHLRDYFEQY--GKIEVIEIMTD 139 (196)
T ss_dssp CCSEEEEECCTTTCCH---HHHHHHHTTT--SCEEEEEEEEC
T ss_pred CcceEEEeCCCCCCCH---HHHHHHHhcC--CCeEEEEEeec
Confidence 4479999999998765 7899999866 46778877765
No 182
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=59.41 E-value=13 Score=33.12 Aligned_cols=37 Identities=8% Similarity=0.209 Sum_probs=29.0
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
...+|.|+|+|.+.++ +.|+++|+.. |.+.++.+.+|
T Consensus 93 ~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~ 129 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLND---DQVKELLTSF--GPLKAFNLVKD 129 (172)
T ss_dssp TTTCEEEECCCTTCCH---HHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCEEEEEcCCCcCCH---HHHHHHHHhc--CCceEEEEEec
Confidence 3579999999998765 7889999876 45777777655
No 183
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=59.18 E-value=6.9 Score=30.90 Aligned_cols=32 Identities=31% Similarity=0.498 Sum_probs=23.4
Q ss_pred EEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
.|||+|.+..+|..|.+.+... +...+.++.|
T Consensus 50 ~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 50 YGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 8999999999999999876543 2234555544
No 184
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=57.81 E-value=14 Score=30.60 Aligned_cols=72 Identities=13% Similarity=0.111 Sum_probs=52.9
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKT 114 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~ 114 (615)
.....+.|+|++.+.+| +.|+++|.++. .|.++++.. | .
T Consensus 5 ~~~~wL~VgNL~~~~te---~~L~~lF~q~G--~V~~~~l~~---------------------------------~---k 43 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDG---PTLRTLCMQHG--PLVSFHPYL---------------------------------N---Q 43 (89)
T ss_dssp CCCCEEEEECCCTTCCC---HHHHHHHHHHS--CEEEEEEET---------------------------------T---T
T ss_pred CccceEEEeCCCccCCH---HHHHHHHHhhC--CEEEEEEcC---------------------------------C---C
Confidence 35678999999998877 78888888874 577776531 0 0
Q ss_pred cccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 115 GFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 115 g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
| .|||.|.+..+|..|.+.+... ......|+.|
T Consensus 44 G--------------------------faFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 44 G--------------------------IALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp T--------------------------EEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred c--------------------------EEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 1 7999999999999998877543 2345666666
No 185
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.82 E-value=7.8 Score=31.17 Aligned_cols=33 Identities=18% Similarity=0.160 Sum_probs=24.9
Q ss_pred EEEEEecCHHHHHHHHHhhcC-C--CCCcceeecCC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQT-R--NPTLWLTDWAP 174 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~-~--~p~~~~v~~AP 174 (615)
.|||+|.+..+|..|.+.+.. . +...+.++.|-
T Consensus 46 ~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 46 YAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp EEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred EEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 799999999999999987655 2 33456666663
No 186
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=56.82 E-value=11 Score=30.48 Aligned_cols=32 Identities=16% Similarity=0.072 Sum_probs=23.3
Q ss_pred EEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
.|||+|.+..+|..|.+.+... +...+.|+.|
T Consensus 52 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (98)
T 2cpf_A 52 FGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRIS 85 (98)
T ss_dssp EEEEEESSHHHHHHHHHHSTTCEETTEECEEECS
T ss_pred EEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 8999999999999998876543 2234555554
No 187
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.78 E-value=9 Score=32.86 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=23.0
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccC
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNH 65 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~ 65 (615)
...++|.|.|||.+.++ +.|+++|+...
T Consensus 23 ~~~~~l~V~nLp~~~te---~~l~~~F~~~G 50 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAEN---KHVIDFFKKLD 50 (124)
T ss_dssp CCCCEEEEECCCTTCCH---HHHHHHSCSSC
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHhcC
Confidence 35589999999998775 78999998764
No 188
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=56.67 E-value=8.9 Score=30.97 Aligned_cols=33 Identities=15% Similarity=0.135 Sum_probs=24.9
Q ss_pred EEEEEecCHHHHHHHHHhhcCC--CCCcceeecCC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAP 174 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~AP 174 (615)
.|||+|.+..+|..|.+.+... +...+.++.|.
T Consensus 55 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 55 IAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp EEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred EEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 7999999999999998866532 33456777763
No 189
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.62 E-value=10 Score=30.86 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=24.5
Q ss_pred EEEEEecCHHHHHHHHHhhcCC--CCCcceeecCC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAP 174 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~AP 174 (615)
.|||+|.+..+|..|.+.+... +...+.++.|-
T Consensus 51 ~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 51 CAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp EEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred EEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 6999999999999998776543 23456666663
No 190
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.58 E-value=9.1 Score=31.32 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=22.3
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhccc
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVN 64 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~ 64 (615)
....+|.|.|||.+.++ +.|+++|+.+
T Consensus 13 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~ 39 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATE---ETLQEVFEKA 39 (101)
T ss_dssp CCCSEEEEESCCTTCCH---HHHHHHCSSC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhC
Confidence 35689999999998765 7899999764
No 191
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=55.66 E-value=17 Score=33.20 Aligned_cols=77 Identities=9% Similarity=0.101 Sum_probs=53.9
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccccc
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMKTG 115 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r~g 115 (615)
...+|.|+|+|.+.++ +.|+++|+.+ |.+.++.+.+|.. ..++
T Consensus 113 ~~~~l~v~nl~~~~~~---~~l~~~f~~~--G~v~~~~~~~~~~---------------------------~~~~----- 155 (198)
T 2yh0_A 113 SAHKLFIGGLPNYLND---DQVKELLTSF--GPLKAFNLVKDSA---------------------------TGLS----- 155 (198)
T ss_dssp CCCEEEEECCCTTCCH---HHHHHHHHTB--SCEEEEEEEECTT---------------------------TCSE-----
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHc--CCccEEEEeecCC---------------------------CCCc-----
Confidence 4579999999997765 7889999876 4577777765421 0000
Q ss_pred ccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 116 FLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 116 ~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
.=.|||+|.+..+|..|.+.+... +...+.++.|
T Consensus 156 ------------------------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 156 ------------------------KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp ------------------------EEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred ------------------------ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 117999999999999998876543 2344566665
No 192
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.55 E-value=10 Score=30.99 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=24.1
Q ss_pred EEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
.|||+|.+..+|..|.+.+... +...+.|+.|
T Consensus 55 ~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 55 YAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp EEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred EEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 9999999999999998866542 2344566665
No 193
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=55.34 E-value=11 Score=28.90 Aligned_cols=17 Identities=18% Similarity=0.221 Sum_probs=15.6
Q ss_pred EEEEEecCHHHHHHHHH
Q 048588 142 TAFVSFKTRWGAAVCAQ 158 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q 158 (615)
.|||+|++..+|..|.+
T Consensus 43 ~afV~f~~~~~a~~a~~ 59 (75)
T 2mss_A 43 FGFVTFESEDIVEKVCE 59 (75)
T ss_dssp EEEEECSCHHHHHHHHS
T ss_pred EEEEEECCHHHHHHHHH
Confidence 89999999999988876
No 194
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.55 E-value=12 Score=31.36 Aligned_cols=41 Identities=15% Similarity=0.103 Sum_probs=28.6
Q ss_pred CCCCCCcceEEEecCCCCC-CccHHHHHHHHhcccCCCceEEE
Q 048588 31 EHRQPDQFTVLVRNVPPDP-DESVTQLVEHFFLVNHPDHYLTH 72 (615)
Q Consensus 31 ~~~~~~~~TVlV~~IP~~~-~~~~~~~l~~~F~~~~p~~v~~v 72 (615)
....|++-++.|+|+|-+. .+.+++.|++.|+++ .|++.+|
T Consensus 3 ~~~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~y-GG~Vl~V 44 (96)
T 2diu_A 3 SGSSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNC-GGKVLSI 44 (96)
T ss_dssp SSCCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTT-TCCEEEC
T ss_pred CCCCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHc-CCeeEEE
Confidence 3344555337799999975 456788899999876 3467665
No 195
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.96 E-value=11 Score=29.46 Aligned_cols=19 Identities=42% Similarity=0.606 Sum_probs=17.6
Q ss_pred EEEEEecCHHHHHHHHHhh
Q 048588 142 TAFVSFKTRWGAAVCAQTQ 160 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~ 160 (615)
.|||+|.+..+|..|.+.+
T Consensus 50 ~afV~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 50 CAFIQFATRQAAEVAAEKS 68 (85)
T ss_dssp EEEEEESSHHHHHHHHHTT
T ss_pred EEEEEECCHHHHHHHHHHh
Confidence 8999999999999998866
No 196
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=51.71 E-value=12 Score=30.03 Aligned_cols=29 Identities=10% Similarity=0.146 Sum_probs=23.1
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCC
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHP 66 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p 66 (615)
.+..||.|.|||.+.++ +.|+++|+.+.+
T Consensus 6 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~G~ 34 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTA---DDLRQLFGDRKL 34 (93)
T ss_dssp CCCCCEEEECCCTTCCH---HHHHHHHHHTTC
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHHcCC
Confidence 45679999999998765 778888887643
No 197
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=51.05 E-value=12 Score=30.06 Aligned_cols=32 Identities=13% Similarity=-0.057 Sum_probs=22.9
Q ss_pred EEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
.|||+|.+..+|..|.+.+... +...+.++.|
T Consensus 59 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 59 FGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp EEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred EEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 8999999999999998866543 2233445444
No 198
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=49.63 E-value=21 Score=31.06 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=27.9
Q ss_pred EEEEEecCHHHHHHHHHhhcCCCC----CcceeecCCCCC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTRNP----TLWLTDWAPEPR 177 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~~p----~~~~v~~APeP~ 177 (615)
.|||.|.+..+|..|.+.+....- ..+.++.|-.++
T Consensus 64 ~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 64 QAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 599999999999999998876542 357788775443
No 199
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=49.13 E-value=10 Score=31.85 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=24.8
Q ss_pred EEEEEecCHHHHHHHHHhhcCCC--CCcceeecCC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTRN--PTLWLTDWAP 174 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~~--p~~~~v~~AP 174 (615)
.|||+|++..+|..|.+.+..+. .....++.+|
T Consensus 61 ~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 61 KIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 79999999999999999886542 3345555554
No 200
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=48.33 E-value=13 Score=30.57 Aligned_cols=32 Identities=16% Similarity=-0.016 Sum_probs=23.1
Q ss_pred EEEEEecCHHHHHHHHHhhcCCC--CCcceeecC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTRN--PTLWLTDWA 173 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~~--p~~~~v~~A 173 (615)
.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 72 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 72 TADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred EEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 89999999999999988765432 233455544
No 201
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=48.29 E-value=11 Score=28.79 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=22.4
Q ss_pred EEEEEecCHHHHHHHHHhhcCC-CCCcceeecC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR-NPTLWLTDWA 173 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~-~p~~~~v~~A 173 (615)
.|||+|++..+|..|.+..... +...+.++.|
T Consensus 44 ~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 44 FGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp EEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred eEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 8999999999999998865411 2234455444
No 202
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=53.87 E-value=3.8 Score=34.79 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=21.6
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccC
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNH 65 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~ 65 (615)
.+..+|.|.|||.+.++ +.|+++|+.+.
T Consensus 5 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~G 32 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTI---ESVADYFKQIG 32 (116)
Confidence 45679999999997654 67888887653
No 203
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=47.97 E-value=20 Score=30.70 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=25.1
Q ss_pred EEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPE 175 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APe 175 (615)
.|||+|.+..+|..|.+.+... +...+.|+.|-.
T Consensus 75 ~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 75 CAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp EEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred EEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 7999999999999998776543 334566666643
No 204
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=47.82 E-value=15 Score=29.55 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=22.2
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhccc
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVN 64 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~ 64 (615)
....||.|.|||.+.++ +.|+++|+..
T Consensus 14 ~~~~~l~V~nL~~~~t~---~~l~~~F~~~ 40 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITE---DELKEVFEDA 40 (96)
T ss_dssp TGGGEEEEESCCSSCCH---HHHHHHHCSE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHhhC
Confidence 45689999999998765 7889999765
No 205
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=47.77 E-value=14 Score=28.92 Aligned_cols=21 Identities=10% Similarity=0.135 Sum_probs=18.5
Q ss_pred EEEEEecCHHHHHHHHHhhcC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQT 162 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~ 162 (615)
.|||+|.+..+|..|.+.+..
T Consensus 49 ~afV~f~~~~~A~~Ai~~lng 69 (81)
T 2krb_A 49 YIFLEYASPAHAVDAVKNADG 69 (81)
T ss_dssp EEEEEESSHHHHHHHHTTSSS
T ss_pred EEEEEECCHHHHHHHHHHhcC
Confidence 899999999999999886654
No 206
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=47.59 E-value=17 Score=28.63 Aligned_cols=31 Identities=6% Similarity=-0.037 Sum_probs=22.1
Q ss_pred EEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
.|||+|.+..+|..|. .+... +...+.+++|
T Consensus 50 ~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 50 FAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp EEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred EEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 8999999999999888 54332 2334566665
No 207
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.21 E-value=6.6 Score=31.32 Aligned_cols=34 Identities=18% Similarity=-0.034 Sum_probs=21.3
Q ss_pred EEEEEecCHHHHHHHHHhhcCCCCCcceeecCCC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTRNPTLWLTDWAPE 175 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~~p~~~~v~~APe 175 (615)
.|||+|++..+|..+.+.-..-+...+.+..|..
T Consensus 44 ~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 44 FAFVTFADDQIAQSLCGEDLIIKGISVHISNAEP 77 (88)
T ss_dssp CCEEECSCHHHHHHTTTCEEEETTEEEEEECCCC
T ss_pred EEEEEECCHHHHHHHhcCCceeCCEEEEEEecCC
Confidence 8999999999987543332222344555666543
No 208
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=47.16 E-value=8.7 Score=33.23 Aligned_cols=86 Identities=12% Similarity=0.033 Sum_probs=58.5
Q ss_pred CcceEEEecCCC--CCCccHHHHHHHHhcccCCCceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccc
Q 048588 36 DQFTVLVRNVPP--DPDESVTQLVEHFFLVNHPDHYLTHQVVSNANKPSELVNKKKKMQNWLDFYELKYSRNPSQKPSMK 113 (615)
Q Consensus 36 ~~~TVlV~~IP~--~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~~~L~~L~~~r~~~~~~Le~~~~k~~~~~~~RP~~r 113 (615)
...+|.++|+-. +.++.+.+.|++.|+++ |.|.++.|..|...- .++.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~--G~V~~v~I~~~~~~~---------------------------~~~~~ 69 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKF--GAVNRVIIYQEKQGE---------------------------EEDAE 69 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTT--SCEEEEEEEEEEESS---------------------------STTCE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhcc--CCEeEEEEeecCCCc---------------------------ccCCc
Confidence 456999999954 44556889999999876 578888888653110 00000
Q ss_pred ccccCCCCCcccHHHHHHHHHhhhccceEEEEEecCHHHHHHHHHhhcCCC--CCcceeecCCC
Q 048588 114 TGFLGLWGETVDPIDFYTSKIETLKKEATAFVSFKTRWGAAVCAQTQQTRN--PTLWLTDWAPE 175 (615)
Q Consensus 114 ~g~~g~~g~kVDaI~~~~~ki~~l~~~I~AFVtF~s~~~A~~~~Q~~~~~~--p~~~~v~~APe 175 (615)
..-.|||+|.+..+|..|.+.+..+. ...+.++.+|+
T Consensus 70 -------------------------~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 70 -------------------------IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp -------------------------EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred -------------------------ceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence 01179999999999999999887653 33455666554
No 209
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=46.13 E-value=12 Score=28.43 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=16.5
Q ss_pred EEEEEecCHHHHHHHHHh
Q 048588 142 TAFVSFKTRWGAAVCAQT 159 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~ 159 (615)
.|||+|++..+|..|.+.
T Consensus 43 ~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 43 FCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp CEEEECSSSHHHHHHHTT
T ss_pred EEEEEECCHHHHHHHHHh
Confidence 899999999999998874
No 210
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=44.61 E-value=18 Score=32.20 Aligned_cols=35 Identities=6% Similarity=0.192 Sum_probs=28.1
Q ss_pred eEEEecC----CCCCCccHHHHHHHHhcccCCCceEEEEEEecC
Q 048588 39 TVLVRNV----PPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNA 78 (615)
Q Consensus 39 TVlV~~I----P~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~ 78 (615)
.|.|.|+ |....+ +.|+++|+.+ |+|.++.++.|-
T Consensus 4 kI~VgnL~~~~~~~tte---~~Lk~~Fs~f--GeV~~~~li~Dp 42 (136)
T 2j8a_A 4 EIVVYPAQDSTTTNIQD---ISIKNYFKKY--GEISHFEAFNDP 42 (136)
T ss_dssp EEEEEESSSSCCCCCCH---HHHHHHHHTT--SCCSEEEEEECT
T ss_pred EEEEeCCCCCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecC
Confidence 6899999 998765 7899999876 467788777664
No 211
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.38 E-value=23 Score=29.46 Aligned_cols=21 Identities=14% Similarity=0.086 Sum_probs=18.4
Q ss_pred EEEEEecCHHHHHHHHHhhcC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQT 162 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~ 162 (615)
.|||+|.+..+|..|.+.+..
T Consensus 58 ~afV~f~~~~~a~~A~~~l~g 78 (114)
T 2do0_A 58 IGTVTFEQSIEAVQAISMFNG 78 (114)
T ss_dssp EEEEEESSHHHHHHHHHHHTT
T ss_pred EEEEEECCHHHHHHHHHHhCC
Confidence 899999999999999886543
No 212
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=44.28 E-value=24 Score=34.49 Aligned_cols=36 Identities=17% Similarity=0.394 Sum_probs=27.6
Q ss_pred CCcceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEE
Q 048588 35 PDQFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVV 75 (615)
Q Consensus 35 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~ 75 (615)
+...||.|+|||.+.++ +.|+++|+.+ |.+.++.+.
T Consensus 205 ~~~~~l~v~nl~~~~~~---~~l~~~F~~~--G~i~~v~~~ 240 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNE---LMLSMLFNQF--PGFKEVRLV 240 (282)
T ss_pred CCCCEEEEeCCCCcCCH---HHHHHHHHhc--CCeEEEEEe
Confidence 35679999999997665 7889999876 457666655
No 213
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.54 E-value=17 Score=28.88 Aligned_cols=31 Identities=10% Similarity=-0.035 Sum_probs=22.4
Q ss_pred EEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
.|||+|.+..+|..|.+ +... +...+.++.|
T Consensus 52 ~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 52 YIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp EEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred EEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 89999999999999998 5432 2234555554
No 214
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=41.80 E-value=13 Score=31.88 Aligned_cols=33 Identities=12% Similarity=0.177 Sum_probs=24.4
Q ss_pred EEEEEecCHHHHHHHHHhhcCCC--CCcceeecCC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTRN--PTLWLTDWAP 174 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~~--p~~~~v~~AP 174 (615)
.|||+|.+..+|..|.+.+.... ...+.++.+|
T Consensus 57 ~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 57 NVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp CEEEECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 68999999999999999876542 3344555544
No 215
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=41.37 E-value=15 Score=28.90 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=16.4
Q ss_pred EEEEEecCHHHHHHHHHh
Q 048588 142 TAFVSFKTRWGAAVCAQT 159 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~ 159 (615)
.|||+|.+..+|..|.+.
T Consensus 55 ~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 55 FGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp EEEEEESSTHHHHHHHHS
T ss_pred EEEEEECCHHHHHHHHHh
Confidence 899999999999998865
No 216
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=41.08 E-value=24 Score=29.56 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=18.5
Q ss_pred EEEEEecCHHHHHHHHHhhcC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQT 162 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~ 162 (615)
.|||.|.+..+|..|.+.+..
T Consensus 59 ~AFVef~~~~~A~~Av~~ln~ 79 (100)
T 3r27_A 59 QALVEFEDVLGACNAVNYAAD 79 (100)
T ss_dssp EEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHhcC
Confidence 899999999999999887654
No 217
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=40.80 E-value=19 Score=31.71 Aligned_cols=35 Identities=11% Similarity=0.097 Sum_probs=27.1
Q ss_pred EEEEEecCHHHHHHHHHhhcCCCC----CcceeecCCCC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTRNP----TLWLTDWAPEP 176 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~~p----~~~~v~~APeP 176 (615)
.|||.|.+..+|..|.+.+....- ..++++.|-.+
T Consensus 68 qAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 68 QALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred EEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 599999999999999998876532 45677777543
No 218
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.57 E-value=20 Score=28.03 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=18.3
Q ss_pred EEEEEecCHHHHHHHHHhhcC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQT 162 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~ 162 (615)
.|||+|.+..+|..|.+.+..
T Consensus 49 ~afV~f~~~~~a~~A~~~l~g 69 (85)
T 1x4e_A 49 YGFVDFDSPSAAQKAVTALKA 69 (85)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHhcC
Confidence 899999999999999886543
No 219
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=39.01 E-value=20 Score=30.00 Aligned_cols=34 Identities=15% Similarity=0.047 Sum_probs=24.7
Q ss_pred EEEEEecCHHHHHHHHHhhcCC----CCCcceeecCCC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR----NPTLWLTDWAPE 175 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~----~p~~~~v~~APe 175 (615)
.|||+|.+..+|..|.+.+... +...+.|+.|-.
T Consensus 54 ~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 54 EAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred EEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 7999999999999998865432 334566666643
No 220
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=38.76 E-value=16 Score=29.34 Aligned_cols=32 Identities=19% Similarity=-0.021 Sum_probs=19.7
Q ss_pred EEEEEecCHHHHHHHHHhhcCCCCCcceeecC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTRNPTLWLTDWA 173 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~~p~~~~v~~A 173 (615)
.|||+|++..+|..+...-...+.....+..|
T Consensus 50 faFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 50 FAFVTFADDKVAQSLCGEDLIIKGISVHISNA 81 (89)
T ss_dssp EEEEEESCHHHHHHHTTCEEEETTEEEEEEEC
T ss_pred EEEEEECCHHHHHHHcCCCcccCCEEEEEEEc
Confidence 99999999999874332211123344555555
No 221
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=38.23 E-value=14 Score=32.73 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=26.0
Q ss_pred cceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEe
Q 048588 37 QFTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVS 76 (615)
Q Consensus 37 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~ 76 (615)
..+|.|.|+|.+.++ +.|+++|+.. |.+.++.+.+
T Consensus 87 ~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~~~i~~ 121 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRP---KEFEEFFSQW--GTIIDAQLML 121 (167)
T ss_dssp CEEEEEEEECTTCCH---HHHHHHHHTT--SCCSEEECCC
T ss_pred CCeEEECCCCCCCCH---HHHHHHHHhC--ccEEEEEEEE
Confidence 458999999998765 7889999876 3465665543
No 222
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=37.98 E-value=36 Score=30.26 Aligned_cols=55 Identities=9% Similarity=0.062 Sum_probs=36.2
Q ss_pred EEEEEecCHHHHHHHHHhhcCC--CCCcceeecCCC--------CCcceecccccChhhHHHHHHH
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAPE--------PRDVYWDNLAIPFVSLTIRRLI 197 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~APe--------P~DIiW~NL~~~~~~r~~R~~~ 197 (615)
.|||+|.+..+|..|.+ +... ....+.++.|.. ..-|+=.||..+..+..++.++
T Consensus 56 ~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F 120 (175)
T 1fje_B 56 FGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVF 120 (175)
T ss_dssp EEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHC
T ss_pred EEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHH
Confidence 89999999999999986 3321 223455555532 2447777887766666666544
No 223
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=37.92 E-value=23 Score=30.94 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=23.8
Q ss_pred EEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
.|||+|.+..+|..|.+.+... +...+.|+.|
T Consensus 94 ~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 127 (143)
T 3egn_A 94 QAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFA 127 (143)
T ss_dssp EEEEECSSHHHHHHHHHHHTTBEETTEECEEEEC
T ss_pred EEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 8999999999999998876543 2334556555
No 224
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.78 E-value=21 Score=30.72 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=19.3
Q ss_pred EEEEEecCHHHHHHHHHhhcCC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR 163 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~ 163 (615)
.|||+|.+..+|..|.+.+...
T Consensus 65 faFV~f~~~~~A~~Ai~~lnG~ 86 (114)
T 2cq2_A 65 YSFARYRTTEESKRAYVTLNGK 86 (114)
T ss_dssp CEEEEESSHHHHHHHHHHTTTC
T ss_pred EEEEEECCHHHHHHHHHHhCCC
Confidence 6999999999999999877654
No 225
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.55 E-value=29 Score=29.36 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=23.7
Q ss_pred EEEEEecCHHHHHHHHHhhcCC----CCCcceeecCC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR----NPTLWLTDWAP 174 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~----~p~~~~v~~AP 174 (615)
.|||+|.+..+|..|.+.+... +...+.|+.|-
T Consensus 54 faFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 54 QAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp EEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred EEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 8999999999999998865421 23345566653
No 226
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.47 E-value=21 Score=29.26 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=16.6
Q ss_pred EEEEEecCHHHHHHHHHh
Q 048588 142 TAFVSFKTRWGAAVCAQT 159 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~ 159 (615)
.|||+|++..+|..|.+.
T Consensus 60 ~afV~f~~~~~a~~a~~~ 77 (105)
T 2dh8_A 60 FGFVKFKDPNCVGTVLAS 77 (105)
T ss_dssp EEEEEESSTTHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHh
Confidence 899999999999998876
No 227
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=36.87 E-value=33 Score=28.96 Aligned_cols=32 Identities=9% Similarity=0.009 Sum_probs=22.6
Q ss_pred EEEEEecCHHHHHHHHHhhcCC--CCCcceeecCC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWAP 174 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~AP 174 (615)
.|||+|.+..+|..|. .+... +...+.|++|-
T Consensus 80 ~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 80 YAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp EEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred EEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 8999999999999888 43322 23446666653
No 228
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=36.57 E-value=26 Score=27.36 Aligned_cols=19 Identities=16% Similarity=0.192 Sum_probs=16.8
Q ss_pred EEEEEecCHHHHHHHHHhhc
Q 048588 142 TAFVSFKTRWGAAVCAQTQQ 161 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~ 161 (615)
.|||+|.+..+|..|. .+.
T Consensus 55 ~afV~f~~~~~a~~A~-~l~ 73 (87)
T 2hzc_A 55 FAFLEFRSVDETTQAM-AFD 73 (87)
T ss_dssp EEEEEESSHHHHHHHG-GGT
T ss_pred EEEEEcCCHHHHHHHH-hcC
Confidence 9999999999999998 543
No 229
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.83 E-value=26 Score=30.29 Aligned_cols=32 Identities=13% Similarity=0.122 Sum_probs=23.1
Q ss_pred EEEEEecCHHHHHHHHHhhcC----CCCCcceeecC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQT----RNPTLWLTDWA 173 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~----~~p~~~~v~~A 173 (615)
.|||+|++..+|..|.+.+.. -+...+.|+.|
T Consensus 69 ~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 69 QAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred EEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 899999999999998875532 23345566665
No 230
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.72 E-value=26 Score=29.15 Aligned_cols=33 Identities=12% Similarity=0.088 Sum_probs=23.4
Q ss_pred EEEEEecCHHHHHHHHHhhcC----CCCCcceeecCC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQT----RNPTLWLTDWAP 174 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~----~~p~~~~v~~AP 174 (615)
.|||+|.+..+|..|.+.+.. -+...+.|+.|-
T Consensus 53 ~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 53 QAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp EEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred EEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 899999999999998876532 123345566653
No 231
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.14 E-value=31 Score=28.47 Aligned_cols=18 Identities=28% Similarity=0.173 Sum_probs=16.3
Q ss_pred EEEEEecCHHHHHHHHHh
Q 048588 142 TAFVSFKTRWGAAVCAQT 159 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~ 159 (615)
.|||+|.+..+|..|.+.
T Consensus 57 ~afV~F~~~~~a~~Al~~ 74 (102)
T 1wez_A 57 EADVEFATHEDAVAAMAK 74 (102)
T ss_dssp EEEEECSSSHHHHHHHTT
T ss_pred EEEEEECCHHHHHHHHHh
Confidence 899999999999999853
No 232
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.27 E-value=31 Score=28.82 Aligned_cols=31 Identities=13% Similarity=0.144 Sum_probs=22.3
Q ss_pred EEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
.|||+|.+..+|..|.+. ... +...+.|+.|
T Consensus 71 ~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 71 FGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp EEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred eEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 899999999999999876 221 2334556655
No 233
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.79 E-value=39 Score=27.74 Aligned_cols=38 Identities=16% Similarity=0.032 Sum_probs=24.9
Q ss_pred EEEEEecCHHHHHHHHHhhcCCC--CCcceeecCCCCCccee
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTRN--PTLWLTDWAPEPRDVYW 181 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~~--p~~~~v~~APeP~DIiW 181 (615)
.|||+|.+..+|..|.+. .... .....+..| .+.++.|
T Consensus 59 ~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~-~~~~~~~ 98 (104)
T 1wg5_A 59 EAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS-SRAEVRT 98 (104)
T ss_dssp EEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE-CTTTSCC
T ss_pred EEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC-CHHHHHH
Confidence 899999999999999886 3221 223455554 3444444
No 234
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.46 E-value=28 Score=29.61 Aligned_cols=31 Identities=10% Similarity=0.102 Sum_probs=22.1
Q ss_pred EEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
.|||+|.+..+|..|.+ +... +...+.|..|
T Consensus 69 ~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 69 EGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp EEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred EEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 89999999999999988 4332 2234555554
No 235
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=31.53 E-value=35 Score=29.68 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=22.3
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccC
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNH 65 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~ 65 (615)
...||.|.|||.+.++ +.|+++|+.+.
T Consensus 44 ~~~~l~V~nLp~~~te---~~L~~~F~~~G 70 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQE---KDLKYIFGRYV 70 (143)
T ss_dssp CCSEEEEEEECTTCCH---HHHHHHHGGGC
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHhC
Confidence 4569999999998765 78899998774
No 236
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=31.03 E-value=32 Score=33.66 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=29.2
Q ss_pred CCcceEEEecCCCC-CCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 35 PDQFTVLVRNVPPD-PDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 35 ~~~~TVlV~~IP~~-~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
....+|.|+|+|.+ .++ +.|+++|+.+ |.+.++.+.+|
T Consensus 208 ~~~~~l~v~nlp~~~~t~---~~l~~~F~~~--G~v~~v~i~~~ 246 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDE---NLLRESFEGF--GSIEKINIPAG 246 (292)
T ss_dssp CTTTEEEEEEECTTTCCH---HHHHHHHGGG--SCEEEEECCSC
T ss_pred CCCceEEEECCCcccCCH---HHHHHHHhcc--CCeeEEEEEec
Confidence 34579999999998 775 7899999876 46777766544
No 237
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=29.51 E-value=26 Score=23.84 Aligned_cols=18 Identities=11% Similarity=0.351 Sum_probs=13.1
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 048588 404 AVVAPFLLPFIIVFFALA 421 (615)
Q Consensus 404 s~i~Plilpf~~~yF~l~ 421 (615)
+.+.|+++.++++||++.
T Consensus 4 ~~~l~~v~~~~ifYFl~i 21 (37)
T 2rdd_B 4 SLILMLVVFGLIFYFMIL 21 (37)
T ss_dssp HHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 346688888888888753
No 238
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=29.31 E-value=28 Score=32.74 Aligned_cols=27 Identities=11% Similarity=-0.095 Sum_probs=21.5
Q ss_pred CcceEEEecCCCCCCccHHHHHHHHhcccC
Q 048588 36 DQFTVLVRNVPPDPDESVTQLVEHFFLVNH 65 (615)
Q Consensus 36 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~ 65 (615)
...||.|.|+|.+.++ +.|+++|+...
T Consensus 122 p~~~l~v~NLp~~~t~---~~L~~~F~~~G 148 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTE---ENFFEICDELG 148 (205)
T ss_dssp CCSEEEEEEECTTCCH---HHHHHHHHHHT
T ss_pred CcceEEEeCCCCCCCH---HHHHHHHHhcC
Confidence 3468999999998765 78888888764
No 239
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.86 E-value=38 Score=27.99 Aligned_cols=30 Identities=10% Similarity=-0.032 Sum_probs=20.6
Q ss_pred EEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 143 AFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 143 AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
+||||++.++|..|.+ +... ....++|++|
T Consensus 52 ~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lk 83 (91)
T 2dnr_A 52 MWVTFLEGSSALNVLS-LNGKELLNRTITIALK 83 (91)
T ss_dssp EEEEESSHHHHHHGGG-GTTCEETTEEEEEEEC
T ss_pred EEEEECChHHHHHHHh-cCCeEeCCeEEEEEeC
Confidence 8999999999988887 3322 2234555554
No 240
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.82 E-value=33 Score=28.46 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=16.0
Q ss_pred EEEEEecCHHHHHHHHH
Q 048588 142 TAFVSFKTRWGAAVCAQ 158 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q 158 (615)
.|||+|++..+|..|..
T Consensus 54 ~aFV~F~~~e~a~~Ai~ 70 (103)
T 1s79_A 54 SIFVVFDSIESAKKFVE 70 (103)
T ss_dssp EEEEEESSHHHHHHHHT
T ss_pred EEEEEECCHHHHHHHHH
Confidence 89999999999999887
No 241
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=28.37 E-value=27 Score=30.12 Aligned_cols=21 Identities=33% Similarity=0.226 Sum_probs=18.4
Q ss_pred EEEEEecCHHHHHHHHHhhcCC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR 163 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~ 163 (615)
.|||+|.+. +|..|.+.+...
T Consensus 69 ~aFV~f~~~-~a~~Ai~~l~g~ 89 (131)
T 2m2b_A 69 FAFIQLSTI-EAAQLLQILQAL 89 (131)
T ss_dssp CEEEECCHH-HHHHHHHHHTTC
T ss_pred EEEEEECCH-HHHHHHHHhcCC
Confidence 899999999 999998877654
No 242
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.27 E-value=25 Score=29.30 Aligned_cols=19 Identities=16% Similarity=0.162 Sum_probs=16.6
Q ss_pred EEEEEecCHHHHHHHHHhhc
Q 048588 142 TAFVSFKTRWGAAVCAQTQQ 161 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~ 161 (615)
.|||+|.+..+|..|. .+.
T Consensus 69 ~afV~f~~~~~a~~A~-~l~ 87 (114)
T 2cq4_A 69 IAYVEFCEIQSVPLAI-GLT 87 (114)
T ss_dssp CEEEEESCGGGHHHHH-HHT
T ss_pred EEEEEeCcHHHHHHHH-HcC
Confidence 8999999999999988 543
No 243
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.74 E-value=32 Score=28.76 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=16.6
Q ss_pred EEEEEecCHHHHHHHHHh
Q 048588 142 TAFVSFKTRWGAAVCAQT 159 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~ 159 (615)
.|||+|.+..+|..|.+.
T Consensus 59 ~afV~F~~~~~a~~Al~~ 76 (114)
T 2cpy_A 59 QALVQFKNEDDARKSERL 76 (114)
T ss_dssp CEEEECSSHHHHHHHGGG
T ss_pred EEEEEECCHHHHHHHHHh
Confidence 899999999999999776
No 244
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.64 E-value=39 Score=28.57 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=16.2
Q ss_pred EEEEEecCHHHHHHHHH
Q 048588 142 TAFVSFKTRWGAAVCAQ 158 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q 158 (615)
.|||+|++..+|..|.+
T Consensus 63 ~afV~F~~~~~a~~Al~ 79 (118)
T 2db1_A 63 EAFVELESEDDVKLALK 79 (118)
T ss_dssp EEEEEBSSHHHHHHHGG
T ss_pred EEEEEECCHHHHHHHHh
Confidence 89999999999999988
No 245
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=25.46 E-value=39 Score=27.89 Aligned_cols=17 Identities=6% Similarity=0.178 Sum_probs=16.2
Q ss_pred EEEEEecCHHHHHHHHH
Q 048588 142 TAFVSFKTRWGAAVCAQ 158 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q 158 (615)
.|||+|.+..+|..|.+
T Consensus 57 ~afV~F~~~~~a~~Al~ 73 (107)
T 2lmi_A 57 DALIEMESEQDVQKALE 73 (107)
T ss_dssp EEEEEBSSHHHHHHHHT
T ss_pred EEEEEECCHHHHHHHHH
Confidence 89999999999999988
No 246
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=30.71 E-value=15 Score=30.82 Aligned_cols=32 Identities=19% Similarity=0.074 Sum_probs=22.6
Q ss_pred EEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
.|||+|.+..+|..|.+.+... +...+.|+.|
T Consensus 59 ~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (116)
T 2lcw_A 59 EATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 92 (116)
Confidence 8999999999999988765432 2234455554
No 247
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=24.65 E-value=91 Score=27.29 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=27.8
Q ss_pred ceEEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEecC
Q 048588 38 FTVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSNA 78 (615)
Q Consensus 38 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d~ 78 (615)
-.|.|.|+|...++ +.|++.|+++ |.+.++.+..+.
T Consensus 29 L~I~V~NL~~~vte---~~L~~lFs~y--G~V~~V~i~~~~ 64 (130)
T 3zzy_A 29 LRIIVENLFYPVTL---DVLHQIFSKF--GTVLKIITFTKN 64 (130)
T ss_dssp EEEEEESCCSCCCH---HHHHHHHTTS--SCEEEEEEEEET
T ss_pred EEEEECCCCCCCCH---HHHHHHHhCc--CCEEEEEEEcCC
Confidence 36669999987765 7899999877 568888776654
No 248
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.79 E-value=45 Score=28.01 Aligned_cols=17 Identities=12% Similarity=0.131 Sum_probs=15.7
Q ss_pred EEEEEecCHHHHHHHHH
Q 048588 142 TAFVSFKTRWGAAVCAQ 158 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q 158 (615)
.|||+|++..+|..|.+
T Consensus 58 ~afV~F~~~~~a~~Al~ 74 (109)
T 2dnn_A 58 NGLVKFLSPQDTFEALK 74 (109)
T ss_dssp EEEEECSSHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHh
Confidence 89999999999999885
No 249
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=23.50 E-value=45 Score=27.69 Aligned_cols=32 Identities=16% Similarity=0.129 Sum_probs=22.4
Q ss_pred EEEEEecCHHHHHHHHHhhcC-CCCCcceeecC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQT-RNPTLWLTDWA 173 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~-~~p~~~~v~~A 173 (615)
.|||+|.+..+|..|.+.... -+...+.++.|
T Consensus 69 ~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 69 FGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp CEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred EEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 899999999999999876421 12334555554
No 250
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=22.73 E-value=80 Score=26.73 Aligned_cols=40 Identities=10% Similarity=0.149 Sum_probs=29.6
Q ss_pred eEEEecCCCC--CCccHHHHHHHHhcccCCC-------ceEEEEEEecC
Q 048588 39 TVLVRNVPPD--PDESVTQLVEHFFLVNHPD-------HYLTHQVVSNA 78 (615)
Q Consensus 39 TVlV~~IP~~--~~~~~~~~l~~~F~~~~p~-------~v~~v~i~~d~ 78 (615)
|++++|+|.+ .++.+++.+++.|+...|. +..++.+.++.
T Consensus 7 tLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~ 55 (104)
T 1wey_A 7 GLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSN 55 (104)
T ss_dssp EEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSS
T ss_pred eEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCC
Confidence 8999999885 3567789999999887654 23366666654
No 251
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.42 E-value=92 Score=25.75 Aligned_cols=37 Identities=8% Similarity=0.003 Sum_probs=25.7
Q ss_pred CcceEEEecCCCCC----C----ccHHHHHHHHhcccCCCceEEEEE
Q 048588 36 DQFTVLVRNVPPDP----D----ESVTQLVEHFFLVNHPDHYLTHQV 74 (615)
Q Consensus 36 ~~~TVlV~~IP~~~----~----~~~~~~l~~~F~~~~p~~v~~v~i 74 (615)
...||+|+|+.... + +.+.+.|+++|+++ |.+.++.+
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~--G~v~~v~i 58 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF--GQIRKLLL 58 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT--SCCSEEEE
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc--CCEeEEEE
Confidence 56799999995421 1 13568899999877 45777744
No 252
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=21.58 E-value=1.5e+02 Score=25.73 Aligned_cols=57 Identities=12% Similarity=-0.072 Sum_probs=36.6
Q ss_pred EEEEEecCHHHHHHHHHhhcCC------------CC---------CcceeecCCCCCcceecccccChhhHHHHHHHH
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR------------NP---------TLWLTDWAPEPRDVYWDNLAIPFVSLTIRRLII 198 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~------------~p---------~~~~v~~APeP~DIiW~NL~~~~~~r~~R~~~~ 198 (615)
.|||.|.+..+|..|.+..... .+ ........+...-|+-.||...-.+.-++.++.
T Consensus 15 ~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~ 92 (158)
T 2kn4_A 15 ETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFE 92 (158)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHHHH
T ss_pred hhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 8999999999999887553311 00 011112233456788899988877777776544
No 253
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=21.05 E-value=49 Score=29.05 Aligned_cols=31 Identities=10% Similarity=0.034 Sum_probs=22.0
Q ss_pred EEEEEecCHHHHHHHHHhhcCC--CCCcceeecC
Q 048588 142 TAFVSFKTRWGAAVCAQTQQTR--NPTLWLTDWA 173 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~~~~~--~p~~~~v~~A 173 (615)
.|||+|++..+|..|.+ +... +.....|..|
T Consensus 90 ~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a 122 (136)
T 2hgl_A 90 EAFVELGSEDDVKMALK-KDRESMGHRYIEVFKS 122 (136)
T ss_dssp EEEEECSSHHHHHHHHT-TTEEESSSSEEEEEEC
T ss_pred EEEEEECCHHHHHHHHh-cCCCEECCEEEEEEEC
Confidence 89999999999999988 4322 2334555555
No 254
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.95 E-value=83 Score=26.85 Aligned_cols=35 Identities=3% Similarity=-0.142 Sum_probs=26.0
Q ss_pred CcceEEE--ecCCCCCCccHHHHHHHHhcccCCCceEEEEEE
Q 048588 36 DQFTVLV--RNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVV 75 (615)
Q Consensus 36 ~~~TVlV--~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~ 75 (615)
...++.| .|+|.+.++ +.|+++|+++. .+.++.+.
T Consensus 24 pt~~L~V~Ng~L~~~~te---~~L~~~F~~fG--~v~~v~i~ 60 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSR---NQLLPVLEKCG--LVDALLMP 60 (114)
T ss_dssp CCSEEEEETCTGGGTCCH---HHHHHHHHHHS--CEEEEECC
T ss_pred CCCEEEEECCCCCCCCCH---HHHHHHHHhcC--CeEEEEEe
Confidence 4568999 559998765 78888998774 67776654
No 255
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.83 E-value=1.1e+02 Score=26.34 Aligned_cols=33 Identities=3% Similarity=-0.126 Sum_probs=25.3
Q ss_pred EEEecCCCCCCccHHHHHHHHhcccCCCceEEEEEEec
Q 048588 40 VLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVSN 77 (615)
Q Consensus 40 VlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~i~~d 77 (615)
|.|.|+|...++ +.|++.|+.+ |.|.++.+...
T Consensus 28 l~V~NL~~~vt~---~~L~~~Fs~y--G~V~~v~i~~~ 60 (124)
T 2e5i_A 28 LSIQNPLYPITV---DVLYTVCNPV--GKVQRIVIFKR 60 (124)
T ss_dssp EEEESCCSCCCH---HHHHHHHTTT--SCEEEEEEEES
T ss_pred EEEcCcCCCCCH---HHHHHHHHhc--CCEEEEEEEeC
Confidence 448999987665 7899999877 56888877543
No 256
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=20.03 E-value=47 Score=28.84 Aligned_cols=18 Identities=28% Similarity=0.241 Sum_probs=16.6
Q ss_pred EEEEEecCHHHHHHHHHh
Q 048588 142 TAFVSFKTRWGAAVCAQT 159 (615)
Q Consensus 142 ~AFVtF~s~~~A~~~~Q~ 159 (615)
.|||+|.+..+|..|.+.
T Consensus 86 faFV~F~~~e~A~~Al~~ 103 (126)
T 2hgm_A 86 EAFVQFASQELAEKALGK 103 (126)
T ss_dssp EEEEEESSTTHHHHHHTT
T ss_pred EEEEEECCHHHHHHHHHH
Confidence 899999999999998875
Done!