BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048589
         (283 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q7XSJ6|CCB21_ORYSJ Cyclin-B2-1 OS=Oryza sativa subsp. japonica GN=CYCB2-1 PE=1 SV=2
          Length = 420

 Score = 35.0 bits (79), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 15/106 (14%)

Query: 157 NHQVQVLEPAVQLLQPQVNTLRQQ---------DSGSHLASEEANDADTDRTLFATFS-- 205
           +HQV V + AV    PQ N +            +S  ++A +E ND D D ++    S  
Sbjct: 85  DHQVSVADAAVVCTDPQKNPIPDGTVDDDVESCESNDYIAVDECNDTDEDESMMDIDSAD 144

Query: 206 KGHPITRA----ELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIV 247
            G+P+       EL++F+       CV+   M +  D +   R I+
Sbjct: 145 SGNPLAATEYVEELYKFYRENEEMSCVQPDYMSSQGDINEKMRAIL 190


>sp|Q01J96|CCB21_ORYSI Cyclin-B2-1 OS=Oryza sativa subsp. indica GN=CYCB2-1 PE=1 SV=1
          Length = 423

 Score = 35.0 bits (79), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 15/106 (14%)

Query: 157 NHQVQVLEPAVQLLQPQVNTLRQQ---------DSGSHLASEEANDADTDRTLFATFS-- 205
           +HQV V + AV    PQ N +            +S  ++A +E ND D D ++    S  
Sbjct: 85  DHQVSVADAAVVCTDPQKNPIPDGTVDDDVESCESNDYIAVDECNDTDEDESMMDIDSAD 144

Query: 206 KGHPITRA----ELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIV 247
            G+P+       EL++F+       CV+   M +  D +   R I+
Sbjct: 145 SGNPLAATEYVEELYKFYRENEEMSCVQPDYMSSQGDINEKMRAIL 190


>sp|P19019|GBRB3_CHICK Gamma-aminobutyric acid receptor subunit beta-3 OS=Gallus gallus
           GN=GABRB3 PE=2 SV=1
          Length = 476

 Score = 33.9 bits (76), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 22/158 (13%)

Query: 8   VPELQEKYTVSLCHLQQFHYIDREAYAKLVFQLALDSHLSKRILAFWNWLETEGFTN--- 64
           V E+   YT+++ + QQ+    R AYA +   L LD+ ++ ++     W+    F N   
Sbjct: 75  VSEVNMDYTLTM-YFQQYWRDKRLAYAGIPLNLTLDNRVADQL-----WVPDTYFLNDKK 128

Query: 65  -FVH------ESLKLTDSLRGLYGLAL-ESALCLVCSDQESFTCRDNNLPLMSQVCGREL 116
            FVH        ++L      LYGL +  +A C++  D   +   + N  L  +  G   
Sbjct: 129 SFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMM--DLRRYPLDEQNCTLEIESYGYTT 186

Query: 117 -SLEFVFQNNENAKAYVTKFVRDVCDRAFIDYDLVLRN 153
             +EF ++  +NA   V +   ++   + ++Y LV +N
Sbjct: 187 DDIEFYWRGGDNAVTGVERI--ELPQFSIVEYRLVSKN 222


>sp|Q5EXX3|ZBT38_RAT Zinc finger and BTB domain-containing protein 38 OS=Rattus norvegicus
            GN=Zbtb38 PE=2 SV=1
          Length = 1203

 Score = 33.5 bits (75), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 82   LALESALCLVCSDQ--ESFT------CRDNNLPLMSQVCGRELSLEFVFQNNENAKAYVT 133
            L L+  +C +C+ Q   S T      C     P   + CGR  S++   Q +E     V 
Sbjct: 1012 LTLKPYICELCAKQFQSSSTLKMHMRCHTGEKPYQCKTCGRRFSVQGNLQKHERIHLGVK 1071

Query: 134  KFVRDVCDRAF 144
            +F+   C++AF
Sbjct: 1072 EFICQYCNKAF 1082


>sp|Q65WM2|DTD_MANSM D-tyrosyl-tRNA(Tyr) deacylase OS=Mannheimia succiniciproducens
           (strain MBEL55E) GN=dtd PE=3 SV=1
          Length = 144

 Score = 33.1 bits (74), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 194 ADTDRTLFATFSKGHPITRA-ELFEFFTRRYGE 225
           ADT R L  +FSKG P   A EL+++F ++ GE
Sbjct: 83  ADTGRGLRPSFSKGAPPQLANELYQYFVQKCGE 115


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.136    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,394,968
Number of Sequences: 539616
Number of extensions: 3962629
Number of successful extensions: 11263
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 11259
Number of HSP's gapped (non-prelim): 7
length of query: 283
length of database: 191,569,459
effective HSP length: 116
effective length of query: 167
effective length of database: 128,974,003
effective search space: 21538658501
effective search space used: 21538658501
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 60 (27.7 bits)