Query 048589
Match_columns 283
No_of_seqs 73 out of 75
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 19:05:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048589.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048589hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rs2_A Musashi-1, RNA-binding 98.7 5.3E-08 1.8E-12 76.2 9.9 84 190-282 18-106 (109)
2 3d2w_A TAR DNA-binding protein 98.6 2.6E-07 8.8E-12 70.0 9.7 77 194-282 8-86 (89)
3 1x4h_A RNA-binding protein 28; 98.6 2.3E-07 8E-12 71.4 9.6 84 193-282 11-103 (111)
4 1wf0_A TDP-43, TAR DNA-binding 98.6 2.7E-07 9.2E-12 68.7 8.9 77 194-282 2-80 (88)
5 1whw_A Hypothetical protein ri 98.6 3.8E-07 1.3E-11 68.9 9.6 81 194-282 5-90 (99)
6 2cqg_A TDP-43, TAR DNA-binding 98.6 4E-07 1.4E-11 69.5 9.5 80 193-282 11-95 (103)
7 2dgo_A Cytotoxic granule-assoc 98.5 5.1E-07 1.8E-11 70.1 10.2 83 192-282 10-97 (115)
8 3ucg_A Polyadenylate-binding p 98.5 3E-07 1E-11 67.9 8.4 78 196-282 5-87 (89)
9 1x5u_A Splicing factor 3B subu 98.5 5.7E-07 1.9E-11 68.7 10.1 83 192-282 10-97 (105)
10 2dgs_A DAZ-associated protein 98.5 4.7E-07 1.6E-11 68.6 9.5 81 193-282 6-91 (99)
11 2cqd_A RNA-binding region cont 98.5 1.1E-06 3.9E-11 68.4 11.7 79 193-280 13-96 (116)
12 2dh8_A DAZ-associated protein 98.5 1.3E-07 4.4E-12 72.4 6.1 81 193-282 12-97 (105)
13 2cq3_A RNA-binding protein 9; 98.5 7.8E-07 2.7E-11 67.8 10.5 83 192-282 10-95 (103)
14 3bs9_A Nucleolysin TIA-1 isofo 98.5 2.3E-07 8E-12 68.2 7.1 80 194-281 3-87 (87)
15 2lxi_A RNA-binding protein 10; 98.5 3.7E-07 1.3E-11 69.3 8.0 79 198-282 2-85 (91)
16 3s7r_A Heterogeneous nuclear r 98.5 6.4E-07 2.2E-11 66.1 9.0 75 193-276 7-86 (87)
17 1x5s_A Cold-inducible RNA-bind 98.5 8.7E-07 3E-11 67.3 9.7 80 192-282 7-94 (102)
18 2dnz_A Probable RNA-binding pr 98.5 3.9E-07 1.3E-11 68.2 7.6 81 194-282 2-87 (95)
19 1x4a_A Splicing factor, argini 98.5 6.8E-07 2.3E-11 69.0 9.1 82 193-282 18-101 (109)
20 2do4_A Squamous cell carcinoma 98.5 4.2E-07 1.4E-11 69.0 7.8 82 193-282 13-98 (100)
21 2cqi_A Nucleolysin TIAR; RNA r 98.5 2E-06 6.8E-11 65.5 11.2 81 193-281 11-94 (103)
22 1x4b_A Heterogeneous nuclear r 98.4 8.6E-07 2.9E-11 69.1 9.1 80 194-282 24-108 (116)
23 1x5t_A Splicing factor 3B subu 98.4 8.3E-07 2.9E-11 66.5 8.6 81 194-282 2-88 (96)
24 2cqb_A Peptidyl-prolyl CIS-tra 98.4 6.3E-07 2.1E-11 68.1 8.0 83 192-282 7-94 (102)
25 1u6f_A Tcubp1, RNA-binding pro 98.4 2.6E-06 9E-11 68.2 11.9 83 191-281 36-123 (139)
26 2xs2_A Deleted in azoospermia- 98.4 2.8E-07 9.4E-12 70.2 5.7 78 194-281 6-87 (102)
27 2cpy_A RNA-binding protein 12; 98.4 6.2E-07 2.1E-11 70.3 7.9 81 191-280 9-94 (114)
28 2cph_A RNA binding motif prote 98.4 1.9E-06 6.6E-11 65.7 10.4 82 193-282 11-99 (107)
29 2cq0_A Eukaryotic translation 98.4 4.5E-07 1.5E-11 69.2 6.8 81 194-282 12-97 (103)
30 1s79_A Lupus LA protein; RRM, 98.4 4.9E-07 1.7E-11 70.7 7.1 73 194-275 8-84 (103)
31 2dis_A Unnamed protein product 98.4 1.3E-06 4.5E-11 67.0 9.2 84 194-282 5-94 (109)
32 2dnm_A SRP46 splicing factor; 98.4 8.8E-07 3E-11 67.5 8.0 81 194-282 10-95 (103)
33 4a8x_A RNA-binding protein wit 98.4 1.2E-06 4E-11 64.4 8.4 80 195-282 2-87 (88)
34 1x5p_A Negative elongation fac 98.4 2.8E-06 9.5E-11 64.3 10.7 80 192-282 10-89 (97)
35 2dgv_A HnRNP M, heterogeneous 98.4 6.2E-07 2.1E-11 66.7 6.8 78 194-282 5-88 (92)
36 2cpf_A RNA binding motif prote 98.4 1.2E-06 4.1E-11 66.0 8.4 81 194-282 2-90 (98)
37 2dnl_A Cytoplasmic polyadenyla 98.4 7.6E-07 2.6E-11 69.8 7.2 83 194-282 5-103 (114)
38 2cpz_A CUG triplet repeat RNA- 98.4 1.3E-06 4.6E-11 67.9 8.3 82 193-282 21-107 (115)
39 1oo0_B CG8781-PA, drosophila Y 98.4 1.4E-06 4.8E-11 67.1 8.4 82 193-282 22-108 (110)
40 2d9p_A Polyadenylate-binding p 98.4 9.4E-07 3.2E-11 67.3 7.1 83 192-282 10-95 (103)
41 1p27_B RNA-binding protein 8A; 98.4 7.9E-07 2.7E-11 68.0 6.7 81 194-282 20-105 (106)
42 4f25_A Polyadenylate-binding p 98.4 1.6E-06 5.5E-11 68.2 8.6 79 195-281 3-84 (115)
43 2err_A Ataxin-2-binding protei 98.4 9.6E-07 3.3E-11 68.8 7.2 83 191-281 23-108 (109)
44 2dgw_A Probable RNA-binding pr 98.3 2.5E-06 8.6E-11 63.6 9.2 82 193-283 6-90 (91)
45 2cjk_A Nuclear polyadenylated 98.3 1.1E-06 3.6E-11 70.9 7.3 75 195-279 1-80 (167)
46 1uaw_A Mouse-musashi-1; RNP-ty 98.3 5.1E-07 1.7E-11 64.9 4.8 70 198-276 1-75 (77)
47 2kxn_B Transformer-2 protein h 98.3 7.3E-07 2.5E-11 72.1 6.1 83 192-282 41-128 (129)
48 3mdf_A Peptidyl-prolyl CIS-tra 98.3 2.7E-06 9.2E-11 62.2 8.6 71 194-275 4-82 (85)
49 2jrs_A RNA-binding protein 39; 98.3 2.4E-06 8.4E-11 66.6 8.8 78 193-281 22-107 (108)
50 1wi8_A EIF-4B, eukaryotic tran 98.3 3.3E-06 1.1E-10 64.6 9.3 80 193-282 11-96 (104)
51 2x1f_A MRNA 3'-END-processing 98.3 3.8E-06 1.3E-10 63.3 9.5 77 197-281 2-83 (96)
52 2cqc_A Arginine/serine-rich sp 98.3 2.6E-06 8.9E-11 63.5 8.5 77 192-276 10-91 (95)
53 2e5g_A U6 snRNA-specific termi 98.3 2.2E-06 7.5E-11 64.5 8.0 76 194-281 5-83 (94)
54 3lqv_A PRE-mRNA branch site pr 98.3 2.1E-06 7.2E-11 66.6 8.1 77 193-280 4-85 (115)
55 2div_A TRNA selenocysteine ass 98.3 2.4E-06 8.1E-11 64.5 8.2 82 193-281 5-95 (99)
56 2fc9_A NCL protein; structure 98.3 2.6E-06 8.9E-11 64.7 8.4 81 193-282 11-93 (101)
57 2fy1_A RNA-binding motif prote 98.3 2.3E-06 7.8E-11 67.6 8.3 80 194-281 4-87 (116)
58 4fxv_A ELAV-like protein 1; RN 98.3 3.5E-06 1.2E-10 65.0 9.0 75 194-279 16-98 (99)
59 2kn4_A Immunoglobulin G-bindin 98.3 4.2E-06 1.5E-10 68.2 9.8 82 193-282 66-152 (158)
60 2e5h_A Zinc finger CCHC-type a 98.3 4.5E-06 1.5E-10 62.2 9.0 76 192-275 11-91 (94)
61 3md1_A Nuclear and cytoplasmic 98.3 2.2E-06 7.6E-11 62.4 7.1 76 199-282 3-83 (83)
62 1l3k_A Heterogeneous nuclear r 98.3 2E-06 7E-11 71.0 7.7 80 193-281 9-93 (196)
63 2dnq_A RNA-binding protein 4B; 98.3 3.2E-06 1.1E-10 63.0 8.0 77 193-282 4-82 (90)
64 2dgp_A Bruno-like 4, RNA bindi 98.3 5.4E-06 1.8E-10 63.3 9.5 83 192-282 8-98 (106)
65 2dnh_A Bruno-like 5, RNA bindi 98.3 8.1E-06 2.8E-10 62.2 10.3 77 194-281 12-98 (105)
66 2jwn_A Embryonic polyadenylate 98.2 4.2E-06 1.4E-10 65.7 8.9 78 195-281 34-116 (124)
67 2dnp_A RNA-binding protein 14; 98.2 9E-06 3.1E-10 60.5 10.2 77 193-282 5-83 (90)
68 1iqt_A AUF1, heterogeneous nuc 98.2 2.4E-06 8.3E-11 61.1 6.8 65 206-276 5-74 (75)
69 2lea_A Serine/arginine-rich sp 98.2 2.2E-06 7.5E-11 69.7 7.4 82 193-282 43-129 (135)
70 1wg5_A Heterogeneous nuclear r 98.2 5.2E-06 1.8E-10 64.0 9.1 80 193-280 11-94 (104)
71 2dng_A Eukaryotic translation 98.2 5.1E-06 1.7E-10 63.4 9.0 81 192-282 10-95 (103)
72 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.2 1.1E-05 3.9E-10 63.9 11.4 76 192-275 58-138 (140)
73 2cpe_A RNA-binding protein EWS 98.2 8E-06 2.7E-10 63.1 10.0 82 194-282 12-105 (113)
74 2khc_A Testis-specific RNP-typ 98.2 2.9E-06 9.8E-11 66.1 7.4 76 192-275 35-115 (118)
75 2e5j_A Methenyltetrahydrofolat 98.2 7.9E-06 2.7E-10 61.8 9.6 79 192-283 14-97 (97)
76 3ex7_B RNA-binding protein 8A; 98.2 3E-06 1E-10 66.8 7.5 78 193-281 18-103 (126)
77 2ywk_A Putative RNA-binding pr 98.2 2.7E-06 9.2E-11 63.6 6.8 76 193-276 12-91 (95)
78 2cqh_A IGF-II mRNA-binding pro 98.2 1.2E-06 4.2E-11 65.5 4.9 80 193-282 4-85 (93)
79 2dhg_A TRNA selenocysteine ass 98.2 1.4E-06 4.8E-11 66.3 5.3 82 194-281 6-91 (104)
80 2do0_A HnRNP M, heterogeneous 98.2 6.6E-06 2.3E-10 63.5 9.2 77 194-278 12-92 (114)
81 2dgt_A RNA-binding protein 30; 98.2 7.6E-06 2.6E-10 61.2 9.1 77 193-282 6-84 (92)
82 2cq4_A RNA binding motif prote 98.2 2.8E-06 9.6E-11 66.0 6.9 77 195-280 23-104 (114)
83 1nu4_A U1A RNA binding domain; 98.2 2.2E-06 7.4E-11 64.3 5.7 81 194-282 5-91 (97)
84 1sjq_A Polypyrimidine tract-bi 98.2 3.1E-06 1.1E-10 67.6 6.8 80 193-281 12-93 (105)
85 1fj7_A Nucleolin RBD1, protein 98.2 1.3E-06 4.3E-11 66.4 4.4 81 193-282 13-97 (101)
86 1wex_A Hypothetical protein (r 98.2 2.2E-06 7.5E-11 67.4 5.9 78 195-281 13-92 (104)
87 2ki2_A SS-DNA binding protein 98.2 1.1E-06 3.9E-11 65.2 4.0 75 198-281 2-81 (90)
88 1p1t_A Cleavage stimulation fa 98.2 2.2E-06 7.5E-11 65.1 5.6 79 195-281 6-89 (104)
89 2cpj_A Non-POU domain-containi 98.2 4.4E-06 1.5E-10 63.3 7.2 77 192-282 10-91 (99)
90 2cqp_A RNA-binding protein 12; 98.2 3.5E-06 1.2E-10 63.5 6.6 81 193-280 11-95 (98)
91 2cq1_A PTB-like protein L; RRM 98.2 3.4E-06 1.2E-10 66.1 6.5 79 195-282 13-93 (101)
92 2j76_E EIF-4B, EIF4B, eukaryot 98.2 2.5E-06 8.4E-11 65.2 5.5 80 192-281 14-99 (100)
93 2kt5_A RNA and export factor-b 98.2 8.1E-06 2.8E-10 64.4 8.7 82 192-281 30-115 (124)
94 1why_A Hypothetical protein ri 98.2 4.5E-06 1.5E-10 63.0 6.9 78 194-282 14-95 (97)
95 2dgu_A Heterogeneous nuclear r 98.2 1.4E-05 4.9E-10 61.0 9.8 76 194-282 8-85 (103)
96 1h2v_Z 20 kDa nuclear CAP bind 98.1 8.7E-06 3E-10 66.6 9.1 82 192-281 34-120 (156)
97 3s8s_A Histone-lysine N-methyl 98.1 8.8E-06 3E-10 64.1 8.7 75 194-279 3-85 (110)
98 1fjc_A Nucleolin RBD2, protein 98.1 3.6E-06 1.2E-10 63.2 6.1 80 193-282 12-93 (96)
99 1x4c_A Splicing factor, argini 98.1 2.7E-05 9.3E-10 60.1 11.1 77 194-282 12-95 (108)
100 2mss_A Protein (musashi1); RNA 98.1 5.3E-06 1.8E-10 59.5 6.6 65 206-276 5-74 (75)
101 1l3k_A Heterogeneous nuclear r 98.1 7.8E-06 2.7E-10 67.5 8.5 79 195-282 102-185 (196)
102 3r27_A HnRNP L, heterogeneous 98.1 8.9E-06 3E-10 64.5 8.4 79 194-281 18-98 (100)
103 2cpd_A Apobec-1 stimulating pr 98.1 2.4E-05 8E-10 59.2 10.5 80 192-282 10-91 (99)
104 2cjk_A Nuclear polyadenylated 98.1 5.2E-06 1.8E-10 66.8 7.0 77 196-281 86-167 (167)
105 3md3_A Nuclear and cytoplasmic 98.1 1.1E-05 3.8E-10 64.3 8.8 73 198-281 1-80 (166)
106 3n9u_C Cleavage and polyadenyl 98.1 5.4E-06 1.9E-10 69.3 7.2 80 194-280 52-137 (156)
107 2la6_A RNA-binding protein FUS 98.1 5.9E-06 2E-10 62.6 6.6 74 192-276 8-97 (99)
108 2jvo_A Nucleolar protein 3; nu 98.1 8.4E-06 2.9E-10 63.7 7.7 77 192-281 26-104 (108)
109 1wel_A RNA-binding protein 12; 98.1 1E-06 3.5E-11 69.9 2.4 80 192-279 20-103 (124)
110 2hzc_A Splicing factor U2AF 65 98.1 1.5E-05 5.1E-10 58.4 8.6 71 194-276 3-86 (87)
111 2m2b_A RNA-binding protein 10; 98.1 1.5E-06 5.1E-11 69.7 3.3 82 194-282 20-110 (131)
112 1x4g_A Nucleolysin TIAR; struc 98.1 2.6E-05 9.1E-10 60.0 10.0 78 193-281 21-100 (109)
113 3p5t_L Cleavage and polyadenyl 98.1 2E-06 6.8E-11 64.4 3.4 74 199-282 3-85 (90)
114 2nlw_A Eukaryotic translation 98.1 1.7E-05 5.7E-10 61.2 8.8 77 196-280 14-100 (105)
115 2krb_A Eukaryotic translation 98.1 9.3E-06 3.2E-10 59.4 6.8 66 197-270 1-75 (81)
116 3ulh_A THO complex subunit 4; 98.1 1.8E-05 6.3E-10 60.3 8.8 75 193-275 25-103 (107)
117 2cpx_A Hypothetical protein FL 98.1 1.3E-05 4.3E-10 62.0 7.8 83 193-282 21-107 (115)
118 2fc8_A NCL protein; structure 98.0 9.8E-06 3.3E-10 61.4 7.0 81 192-282 10-94 (102)
119 1b7f_A Protein (SXL-lethal pro 98.0 1.1E-05 3.7E-10 64.8 7.6 78 196-281 2-84 (168)
120 2dgx_A KIAA0430 protein; RRM d 98.0 3.3E-05 1.1E-09 58.4 9.6 80 194-281 6-91 (96)
121 1x4e_A RNA binding motif, sing 98.0 1.1E-05 3.8E-10 59.1 6.6 59 194-258 2-65 (85)
122 4f02_A Polyadenylate-binding p 98.0 2E-05 6.9E-10 67.4 9.3 78 194-279 12-94 (213)
123 2bz2_A Negative elongation fac 98.0 7E-06 2.4E-10 65.7 5.8 76 192-281 34-112 (121)
124 2db1_A Heterogeneous nuclear r 98.0 7.1E-06 2.4E-10 64.9 5.8 79 193-278 13-96 (118)
125 3ns6_A Eukaryotic translation 98.0 7.5E-06 2.6E-10 62.7 5.7 75 196-281 5-94 (100)
126 2la4_A Nuclear and cytoplasmic 98.0 6.9E-06 2.4E-10 62.3 5.5 76 193-279 23-100 (101)
127 1wez_A HnRNP H', FTP-3, hetero 98.0 9.4E-06 3.2E-10 62.9 6.4 80 192-281 10-93 (102)
128 1fxl_A Paraneoplastic encephal 98.0 2.2E-05 7.4E-10 62.6 8.6 77 197-281 2-83 (167)
129 2ytc_A PRE-mRNA-splicing facto 98.0 2.6E-05 8.9E-10 57.0 8.3 71 194-275 9-82 (85)
130 2lkz_A RNA-binding protein 5; 98.0 9.4E-06 3.2E-10 62.8 6.1 77 194-275 6-90 (95)
131 2cpi_A CCR4-NOT transcription 98.0 1E-05 3.5E-10 63.0 6.2 80 195-282 13-103 (111)
132 1rk8_A CG8781-PA, CG8781-PA pr 98.0 1.7E-05 5.7E-10 65.9 7.8 80 194-281 69-153 (165)
133 2e44_A Insulin-like growth fac 98.0 3.5E-05 1.2E-09 57.7 8.6 77 194-282 12-94 (96)
134 2ad9_A Polypyrimidine tract-bi 98.0 7.6E-06 2.6E-10 66.6 5.1 80 194-282 28-109 (119)
135 2dha_A FLJ20171 protein; RRM d 98.0 8.4E-06 2.9E-10 66.2 5.4 77 194-278 20-103 (123)
136 1wf1_A RNA-binding protein RAL 98.0 3.8E-05 1.3E-09 59.2 8.9 75 193-280 23-100 (110)
137 2i2y_A Fusion protein consists 97.9 2E-05 7E-10 64.0 7.5 77 192-281 68-149 (150)
138 2lmi_A GRSF-1, G-rich sequence 97.9 5.8E-06 2E-10 64.0 4.0 79 193-279 7-91 (107)
139 2yh0_A Splicing factor U2AF 65 97.9 3.3E-05 1.1E-09 63.7 8.5 82 193-282 110-196 (198)
140 2hgl_A HNRPF protein, heteroge 97.9 1.5E-05 5.1E-10 65.7 6.1 79 193-279 40-124 (136)
141 2voo_A Lupus LA protein; RNA-b 97.9 2.5E-05 8.7E-10 67.2 7.8 71 196-275 108-182 (193)
142 2xnq_A Nuclear polyadenylated 97.9 9.4E-05 3.2E-09 56.4 10.0 78 191-281 16-96 (97)
143 2hgm_A HNRPF protein, heteroge 97.9 1.8E-05 6.2E-10 64.6 6.1 79 192-279 37-120 (126)
144 2ek1_A RNA-binding protein 12; 97.9 1.5E-05 5.2E-10 59.4 5.2 76 194-276 12-91 (95)
145 2dnn_A RNA-binding protein 12; 97.9 2.2E-05 7.7E-10 62.2 6.1 76 194-279 13-92 (109)
146 1x4d_A Matrin 3; structural ge 97.8 3.4E-05 1.2E-09 60.8 6.9 77 193-278 11-90 (102)
147 2lcw_A RNA-binding protein FUS 97.0 2.5E-06 8.5E-11 66.6 0.0 81 194-282 4-97 (116)
148 2hvz_A Splicing factor, argini 97.8 3E-05 1E-09 58.7 6.0 73 199-281 2-76 (101)
149 2a3j_A U1 small nuclear ribonu 97.8 0.00014 4.9E-09 59.1 10.3 75 195-280 27-110 (127)
150 2qfj_A FBP-interacting repress 97.8 3.8E-05 1.3E-09 64.2 7.0 79 194-280 25-108 (216)
151 2g4b_A Splicing factor U2AF 65 97.8 6.6E-05 2.3E-09 60.5 8.2 76 195-280 2-88 (172)
152 2jvr_A Nucleolar protein 3; RN 97.8 8.4E-05 2.9E-09 59.2 8.6 79 193-280 24-105 (111)
153 1fje_B Nucleolin RBD12, protei 97.8 2.4E-05 8E-10 63.7 5.4 81 192-281 8-92 (175)
154 3nmr_A Cugbp ELAV-like family 97.8 2.1E-05 7E-10 63.4 4.9 57 196-258 2-65 (175)
155 3egn_A RNA-binding protein 40; 97.8 4.1E-05 1.4E-09 61.7 6.1 80 194-280 42-130 (143)
156 3pgw_A U1-A; protein-RNA compl 97.7 8.9E-05 3.1E-09 65.2 8.8 78 194-279 6-89 (282)
157 1x5o_A RNA binding motif, sing 97.7 3.2E-05 1.1E-09 59.8 5.2 60 193-258 21-84 (114)
158 2qfj_A FBP-interacting repress 97.7 5.3E-05 1.8E-09 63.3 7.0 79 195-281 123-206 (216)
159 2yh0_A Splicing factor U2AF 65 97.7 0.00012 4.1E-09 60.4 8.9 76 195-280 2-88 (198)
160 4f02_A Polyadenylate-binding p 97.7 7.4E-05 2.5E-09 63.9 7.9 78 196-281 102-182 (213)
161 1fje_B Nucleolin RBD12, protei 97.7 6.9E-05 2.4E-09 60.9 7.0 79 193-281 95-175 (175)
162 2f3j_A RNA and export factor b 97.7 9.9E-05 3.4E-09 62.7 7.9 79 193-279 84-166 (177)
163 2g4b_A Splicing factor U2AF 65 97.7 0.00019 6.4E-09 57.9 9.2 76 193-276 90-170 (172)
164 2dit_A HIV TAT specific factor 97.7 0.00023 7.9E-09 55.4 9.3 78 193-282 11-104 (112)
165 3md3_A Nuclear and cytoplasmic 97.7 9.7E-05 3.3E-09 58.8 7.3 75 193-275 83-162 (166)
166 2ghp_A U4/U6 snRNA-associated 97.7 0.00014 4.9E-09 64.2 8.8 76 192-276 36-114 (292)
167 3q2s_C Cleavage and polyadenyl 97.6 8.2E-05 2.8E-09 65.7 6.9 77 196-279 67-149 (229)
168 2kvi_A Nuclear polyadenylated 97.6 0.00012 4.2E-09 55.1 6.5 71 194-280 7-83 (96)
169 2hgn_A Heterogeneous nuclear r 97.6 3.4E-05 1.2E-09 63.8 3.5 79 192-280 41-123 (139)
170 2ghp_A U4/U6 snRNA-associated 97.6 0.00031 1.1E-08 62.0 9.6 80 193-281 206-292 (292)
171 1x4f_A Matrin 3; structural ge 97.6 3.2E-05 1.1E-09 62.2 2.9 79 194-281 22-103 (112)
172 1whx_A Hypothetical protein ri 97.6 0.00011 3.8E-09 57.4 5.9 67 196-276 9-83 (111)
173 2d9o_A DNAJ (HSP40) homolog, s 97.5 0.0007 2.4E-08 53.0 9.8 75 197-280 10-90 (100)
174 3pgw_S U1-70K; protein-RNA com 97.5 0.00041 1.4E-08 67.0 10.3 79 194-280 99-182 (437)
175 3pgw_A U1-A; protein-RNA compl 97.5 0.00033 1.1E-08 61.6 8.8 71 194-274 204-277 (282)
176 2adc_A Polypyrimidine tract-bi 97.5 0.00028 9.7E-09 60.9 8.1 78 192-279 29-109 (229)
177 3beg_B Splicing factor, argini 97.4 0.00016 5.6E-09 56.6 5.5 61 196-271 15-80 (115)
178 3smz_A Protein raver-1, ribonu 97.4 0.0002 6.7E-09 63.1 6.2 77 195-282 182-266 (284)
179 1b7f_A Protein (SXL-lethal pro 97.4 0.00016 5.3E-09 58.0 4.9 71 194-275 86-166 (168)
180 3sde_A Paraspeckle component 1 97.4 0.00051 1.7E-08 60.6 8.5 74 192-279 17-95 (261)
181 3nmr_A Cugbp ELAV-like family 97.4 0.0003 1E-08 56.5 6.3 59 194-258 92-154 (175)
182 3smz_A Protein raver-1, ribonu 97.3 0.00052 1.8E-08 60.4 8.0 80 194-281 92-176 (284)
183 1wg1_A KIAA1579 protein, homol 97.3 0.00029 9.9E-09 52.2 5.1 72 194-277 2-75 (88)
184 1qm9_A Polypyrimidine tract-bi 97.2 0.00049 1.7E-08 57.2 6.2 71 196-279 2-78 (198)
185 3sde_A Paraspeckle component 1 97.2 0.00041 1.4E-08 61.1 5.8 79 196-280 95-179 (261)
186 3zzy_A Polypyrimidine tract-bi 97.1 0.0019 6.5E-08 53.3 8.6 65 192-261 21-90 (130)
187 2cq2_A Hypothetical protein LO 97.1 0.002 6.9E-08 52.0 8.6 59 196-261 24-87 (114)
188 1fxl_A Paraneoplastic encephal 97.1 0.0011 3.9E-08 52.5 6.7 66 195-271 86-159 (167)
189 3tyt_A Heterogeneous nuclear r 97.0 0.0026 9E-08 54.8 8.9 68 196-276 3-76 (205)
190 1sjr_A Polypyrimidine tract-bi 97.0 0.0025 8.6E-08 54.6 8.6 64 194-261 41-108 (164)
191 1qm9_A Polypyrimidine tract-bi 96.9 0.0024 8.2E-08 53.0 7.2 73 194-279 117-196 (198)
192 3u1l_A PRE-mRNA-splicing facto 96.8 0.00093 3.2E-08 60.4 4.6 59 194-261 131-203 (240)
193 2e5i_A Heterogeneous nuclear r 96.8 0.018 6.2E-07 46.7 11.6 62 194-261 20-86 (124)
194 2adc_A Polypyrimidine tract-bi 96.7 0.0043 1.5E-07 53.4 7.5 73 194-279 148-227 (229)
195 1jmt_A Splicing factor U2AF 35 96.6 0.0057 1.9E-07 47.5 7.0 59 210-275 27-101 (104)
196 2pe8_A Splicing factor 45; RRM 96.6 0.0047 1.6E-07 48.3 6.5 61 211-279 26-93 (105)
197 2j8a_A Histone-lysine N-methyl 96.2 0.0074 2.5E-07 50.7 6.0 38 210-249 18-57 (136)
198 3tyt_A Heterogeneous nuclear r 96.1 0.011 3.7E-07 50.9 6.8 58 195-257 121-182 (205)
199 3tht_A Alkylated DNA repair pr 96.1 0.022 7.5E-07 53.9 9.3 64 193-262 14-81 (345)
200 2wbr_A GW182, gawky, LD47780P; 95.7 0.022 7.7E-07 44.4 6.3 64 199-276 9-77 (89)
201 3v4m_A Splicing factor U2AF 65 95.6 0.027 9.1E-07 43.8 6.5 61 211-279 28-96 (105)
202 3s6e_A RNA-binding protein 39; 94.8 0.067 2.3E-06 42.5 6.7 59 211-278 30-91 (114)
203 2diu_A KIAA0430 protein; struc 94.7 0.15 5.1E-06 40.3 8.3 67 196-280 7-84 (96)
204 3ue2_A Poly(U)-binding-splicin 93.6 0.15 5.1E-06 40.7 6.4 59 212-278 39-107 (118)
205 3pq1_A Poly(A) RNA polymerase; 91.4 0.14 4.9E-06 50.3 4.3 57 196-259 52-108 (464)
206 1owx_A Lupus LA protein, SS-B, 91.0 0.22 7.5E-06 40.5 4.3 58 209-272 30-88 (121)
207 3dxb_A Thioredoxin N-terminall 88.8 0.83 2.8E-05 38.7 6.4 59 211-277 142-210 (222)
208 2dhx_A Poly (ADP-ribose) polym 80.1 11 0.00037 30.1 8.7 73 198-282 9-86 (104)
209 2dnr_A Synaptojanin-1; RRM dom 74.2 15 0.0005 28.5 7.8 69 198-279 8-85 (91)
210 2hl7_A Cytochrome C-type bioge 71.4 1.8 6.2E-05 33.3 2.0 16 210-225 60-75 (84)
211 2kw0_A CCMH protein; oxidoredu 70.5 1.9 6.7E-05 33.6 2.0 16 210-225 57-72 (90)
212 3p3d_A Nucleoporin 53; structu 66.6 8.8 0.0003 31.8 5.3 66 207-277 14-96 (132)
213 2l9w_A U4/U6 snRNA-associated- 65.2 32 0.0011 28.0 8.2 68 194-273 18-93 (117)
214 1ufw_A Synaptojanin 2; RNP dom 54.7 27 0.00093 27.3 5.9 51 213-276 39-91 (95)
215 2dzr_A General transcription f 47.2 10 0.00035 30.1 2.3 60 205-269 2-82 (99)
216 1wwh_A Nucleoporin 35, nucleop 36.0 1.1E+02 0.0039 24.6 7.0 47 207-259 31-78 (119)
217 1i27_A Transcription factor II 29.1 32 0.0011 25.9 2.4 57 206-271 6-67 (73)
218 2dn5_A General transcription f 26.7 13 0.00046 28.9 -0.0 58 207-269 4-82 (89)
219 1j1j_A Translin; testis/brain 25.1 92 0.0031 27.6 5.1 70 29-98 80-176 (240)
220 1nha_A TFIIF-alpha, transcript 23.1 42 0.0014 25.7 2.1 57 206-271 15-76 (82)
No 1
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.74 E-value=5.3e-08 Score=76.18 Aligned_cols=84 Identities=19% Similarity=0.335 Sum_probs=65.7
Q ss_pred CCCCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeee
Q 048589 190 EANDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQ 264 (283)
Q Consensus 190 ~~~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~k 264 (283)
....+++.+|+|| +|.| ++++||+++|.+ ||. |+.|.|-. +++..+||+|.|.+.+....++....
T Consensus 18 ~~~~~~~~~~lfV---~nLp~~~te~~L~~~F~~-~G~--i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~--- 88 (109)
T 2rs2_A 18 GSHMGSSGCKMFI---GGLSWQTTQEGLREYFGQ-FGE--VKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR--- 88 (109)
T ss_dssp --------CCEEE---ESCCTTCCHHHHHHHHTT-TSC--EEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC---
T ss_pred ccccCCCCCEEEE---eCCCCCCCHHHHHHHHHc-cCC--eEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC---
Confidence 3445678899998 6877 999999999996 998 67777654 58889999999999999999998653
Q ss_pred EEEcCceeEEEecccCCC
Q 048589 265 FNIHGKDVRVRRFVPKRA 282 (283)
Q Consensus 265 f~Ingk~iWaRky~pk~~ 282 (283)
..++|+.+-++...|++.
T Consensus 89 ~~l~g~~l~V~~a~~~~~ 106 (109)
T 2rs2_A 89 HELDSKTIDPKVAFPRRA 106 (109)
T ss_dssp EEETTEEEEEEECCCCCC
T ss_pred CcCCCEEEEEEEccCCCC
Confidence 789999999999888764
No 2
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.61 E-value=2.6e-07 Score=70.02 Aligned_cols=77 Identities=25% Similarity=0.361 Sum_probs=60.0
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCce
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKD 271 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~ 271 (283)
+....|+|| +|.| +||++++++|.+ ||+ |++|.|- .+..+||+|.|.+++..+. |+|. .+.++|+.
T Consensus 8 ~~~~~~l~V---~~Lp~~~te~~L~~~F~~-~G~--i~~v~i~--~~srGfaFV~F~~~~~A~~-~~~~---~~~~~g~~ 75 (89)
T 3d2w_A 8 HHHGSKVFV---GRCTEDMTAEELQQFFCQ-YGE--VVDVFIP--KPFRAFAFVTFADDKVAQS-LCGE---DLIIKGIS 75 (89)
T ss_dssp ---CCEEEE---ESCCTTCCHHHHHHHHTT-TSC--EEEEECC--SSCCSEEEEEESCHHHHHH-HTTC---EEEETTEE
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHhc-cCC--EEEEEEe--eCCCCEEEEEECCHHHHHH-HcCC---CcccCCEE
Confidence 445568888 8888 999999999996 998 7777773 3578999999999999885 5664 77899999
Q ss_pred eEEEecccCCC
Q 048589 272 VRVRRFVPKRA 282 (283)
Q Consensus 272 iWaRky~pk~~ 282 (283)
+.+++..||+.
T Consensus 76 v~v~~a~~k~~ 86 (89)
T 3d2w_A 76 VHISNAEPKHN 86 (89)
T ss_dssp EEEEECC----
T ss_pred EEEEEcCCCCc
Confidence 99999998864
No 3
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.60 E-value=2.3e-07 Score=71.35 Aligned_cols=84 Identities=14% Similarity=0.228 Sum_probs=67.8
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCee----
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELM---- 263 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~---- 263 (283)
.+++.+|+|| +|.| ++++||+++|.+ ||+ |+.|.+.. +++...||+|.|.+.+....++...+..
T Consensus 11 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~ 84 (111)
T 1x4h_A 11 DVTEGKTVFI---RNLSFDSEEEALGEVLQQ-FGD--LKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGG 84 (111)
T ss_dssp CCCCCCCEEE---ESCCTTCCHHHHHHHHHT-TSC--EEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTC
T ss_pred cCCCCCEEEE---ECCCCCCCHHHHHHHHHh-cCC--eEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccC
Confidence 3556789998 7888 999999999986 998 67777754 5778999999999999988888643311
Q ss_pred eEEEcCceeEEEecccCCC
Q 048589 264 QFNIHGKDVRVRRFVPKRA 282 (283)
Q Consensus 264 kf~Ingk~iWaRky~pk~~ 282 (283)
...|+|+.+-++...|++.
T Consensus 85 ~~~~~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 85 GLKLDGRQLKVDLAVTRDE 103 (111)
T ss_dssp CEESSSCEEEEECCCCCCC
T ss_pred CcEEcCEEEEEEECCCCcc
Confidence 3578999999998888764
No 4
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.57 E-value=2.7e-07 Score=68.66 Aligned_cols=77 Identities=23% Similarity=0.375 Sum_probs=63.8
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCce
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKD 271 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~ 271 (283)
+...||+|| +|.| ++++||+++|.+ ||+ |+.|.|- .....||.|.|.+.+..+.+ +|. .+.++|+.
T Consensus 2 ~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~--i~~v~i~--~~~~g~afV~f~~~~~a~~~-~~~---~~~~~g~~ 69 (88)
T 1wf0_A 2 SSGSSGVFV---GRCTGDMTEDELREFFSQ-YGD--VMDVFIP--KPFRAFAFVTFADDQIAQSL-CGE---DLIIKGIS 69 (88)
T ss_dssp CSCCCEEEE---ESCCSSSCHHHHHHHSTT-TSC--CCEEECC--SSCCSCCEEECSCHHHHHHT-TTC---EEEETTEE
T ss_pred CCCCcEEEE---eCCCCCCCHHHHHHHHHH-cCC--eeEEEEe--cCCCCEEEEEECCHHHHHHH-hcC---CceeCCEE
Confidence 346799999 7888 999999999986 998 7777773 34778999999999998764 554 68999999
Q ss_pred eEEEecccCCC
Q 048589 272 VRVRRFVPKRA 282 (283)
Q Consensus 272 iWaRky~pk~~ 282 (283)
+-+....||+.
T Consensus 70 l~v~~a~~~~~ 80 (88)
T 1wf0_A 70 VHISNAEPKHN 80 (88)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEecCCCCC
Confidence 99999888764
No 5
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.56 E-value=3.8e-07 Score=68.93 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=65.9
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIH 268 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~In 268 (283)
+.+.+|+|| +|.| ++++||+++|.+ ||+ |+.|.|.. .++...||.|.|.+.+....++..-+. ..|+
T Consensus 5 ~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~ 76 (99)
T 1whw_A 5 SSGSGRLFV---RNLSYTSSEEDLEKLFSA-YGP--LSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDG--QVFQ 76 (99)
T ss_dssp CCSCEEEEE---ECCCTTCCHHHHHHHHHT-TSC--EEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTT--EESS
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--EeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCC--CEEC
Confidence 567899999 6888 999999999996 998 77777754 677889999999999998887742221 3689
Q ss_pred CceeEEEecccCCC
Q 048589 269 GKDVRVRRFVPKRA 282 (283)
Q Consensus 269 gk~iWaRky~pk~~ 282 (283)
|+.+-++...|++.
T Consensus 77 g~~l~V~~a~~~~~ 90 (99)
T 1whw_A 77 GRMLHVLPSTIKKE 90 (99)
T ss_dssp SCEEEEEECCCCST
T ss_pred CcEEEEEEcCCCcc
Confidence 99999988887764
No 6
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.55 E-value=4e-07 Score=69.47 Aligned_cols=80 Identities=18% Similarity=0.256 Sum_probs=66.2
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNI 267 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~I 267 (283)
..++.+++|| +|.| ++++||+++|.+ ||+ |+.|.|-. +++...||+|.|.+.+....++... ..|
T Consensus 11 ~~~~~~~l~v---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~----~~~ 80 (103)
T 2cqg_A 11 AVQKTSDLIV---LGLPWKTTEQDLKEYFST-FGE--VLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR----HMI 80 (103)
T ss_dssp CCCCCCCEEE---ESCCSSCCHHHHHHHHGG-GSC--EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSC----EEE
T ss_pred ccCCCCEEEE---EcCCCcCCHHHHHHHHHh-cCC--eEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcC----Cee
Confidence 4566789988 6787 999999999986 998 66666643 5778899999999999999999842 389
Q ss_pred cCceeEEEecccCCC
Q 048589 268 HGKDVRVRRFVPKRA 282 (283)
Q Consensus 268 ngk~iWaRky~pk~~ 282 (283)
+|+.+-++...||..
T Consensus 81 ~g~~l~v~~a~~~~~ 95 (103)
T 2cqg_A 81 DGRWCDCKLPNSKQS 95 (103)
T ss_dssp TTEEEEEECCCTTCC
T ss_pred CCeEEEEEecCCCCc
Confidence 999999998888764
No 7
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.55 E-value=5.1e-07 Score=70.14 Aligned_cols=83 Identities=14% Similarity=0.154 Sum_probs=65.6
Q ss_pred CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEE
Q 048589 192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFN 266 (283)
Q Consensus 192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~ 266 (283)
..+.+.+|+|| +|.| ++++||+++|.+ ||. |+.|.+.. .++...||+|.|.+.+....++...+. ..
T Consensus 10 ~~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~ 81 (115)
T 2dgo_A 10 KDTSNHFHVFV---GDLSPEITTEDIKAAFAP-FGR--ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG--QW 81 (115)
T ss_dssp CCSTTCEEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTT--CE
T ss_pred CCCCCCcEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCC--CE
Confidence 34567899998 7888 999999999995 998 66776654 577788999999999998887753221 25
Q ss_pred EcCceeEEEecccCCC
Q 048589 267 IHGKDVRVRRFVPKRA 282 (283)
Q Consensus 267 Ingk~iWaRky~pk~~ 282 (283)
|+|+.+-++...|+++
T Consensus 82 ~~g~~l~V~~a~~~~~ 97 (115)
T 2dgo_A 82 LGGRQIRTNWATRKPP 97 (115)
T ss_dssp ETTEECEEEESSCCCC
T ss_pred ECCEEEEEEEccCCCC
Confidence 8999998888877654
No 8
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.54 E-value=3e-07 Score=67.89 Aligned_cols=78 Identities=15% Similarity=0.189 Sum_probs=63.2
Q ss_pred CCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589 196 TDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHGK 270 (283)
Q Consensus 196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk 270 (283)
+.||+|| +|.| ++++||+++|.+ ||. |+.+.+.. ++++..||.|.|.+.+....++. .+.. .++|+
T Consensus 5 ~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~g~--~~~g~ 75 (89)
T 3ucg_A 5 DARSIYV---GNVDYGATAEELEAHFHG-CGS--VNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA-LDES--LFRGR 75 (89)
T ss_dssp HHTEEEE---ESCCTTCCHHHHHHHHGG-GCC--EEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGG-GTTC--EETTE
T ss_pred cCCEEEE---eCCCCCCCHHHHHHHHHh-CCC--EEEEEEEecCCCCCcceEEEEEECCHHHHHHHHh-cCCC--EECCc
Confidence 4689988 6888 899999999996 998 66766643 67889999999999999888873 2222 48999
Q ss_pred eeEEEecccCCC
Q 048589 271 DVRVRRFVPKRA 282 (283)
Q Consensus 271 ~iWaRky~pk~~ 282 (283)
.+-++...|+.+
T Consensus 76 ~l~V~~a~~~~p 87 (89)
T 3ucg_A 76 QIKVIPKRTNRP 87 (89)
T ss_dssp ECEEEETTTTSC
T ss_pred EEEEEEccCCCC
Confidence 999998877765
No 9
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.54 E-value=5.7e-07 Score=68.66 Aligned_cols=83 Identities=19% Similarity=0.310 Sum_probs=66.6
Q ss_pred CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEE
Q 048589 192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFN 266 (283)
Q Consensus 192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~ 266 (283)
..+...+++|| +|.| ++++||+++|.+ ||+ |+.|.+.. .++...||.|.|.+.+....++..-+. ..
T Consensus 10 ~~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~ 81 (105)
T 1x5u_A 10 SERNQDATVYV---GGLDEKVSEPLLWELFLQ-AGP--VVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDM--IK 81 (105)
T ss_dssp CCCCTTTEEEE---ECCCTTCCHHHHHHHHHT-TSC--EEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSS--CB
T ss_pred ccCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCC--Ce
Confidence 34567799999 6888 999999999997 998 67777654 577888999999999998887763221 24
Q ss_pred EcCceeEEEecccCCC
Q 048589 267 IHGKDVRVRRFVPKRA 282 (283)
Q Consensus 267 Ingk~iWaRky~pk~~ 282 (283)
|+|+.+-++...|++.
T Consensus 82 ~~g~~l~v~~a~~~~~ 97 (105)
T 1x5u_A 82 LYGKPIRVNKASAHNK 97 (105)
T ss_dssp CSSCBCEEEETTTTSC
T ss_pred ECCeEEEEEECCCCCc
Confidence 8999999998888764
No 10
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.54 E-value=4.7e-07 Score=68.58 Aligned_cols=81 Identities=21% Similarity=0.379 Sum_probs=65.0
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNI 267 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~I 267 (283)
.+.+.+++|| +|.| ++++||+++|.+ ||. |+.|.+-. +++...||.|.|.+++....++. .+ ...|
T Consensus 6 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~--~~~~ 76 (99)
T 2dgs_A 6 SGSKSNKIFV---GGIPHNCGETELREYFKK-FGV--VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MH--FHDI 76 (99)
T ss_dssp CCSSCCEEEE---ESCCSSCCHHHHHHHHSS-SSC--EEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HC--CCBS
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hC--CCEE
Confidence 3567799998 7888 999999999997 998 66666643 57788999999999999887775 22 1268
Q ss_pred cCceeEEEecccCCC
Q 048589 268 HGKDVRVRRFVPKRA 282 (283)
Q Consensus 268 ngk~iWaRky~pk~~ 282 (283)
+|+.+-++...|++.
T Consensus 77 ~g~~l~V~~a~~~~~ 91 (99)
T 2dgs_A 77 MGKKVEVKRAEPRDS 91 (99)
T ss_dssp SSCBCEEEECCCCCC
T ss_pred CCeEEEEEECCCCcc
Confidence 999999998887764
No 11
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.52 E-value=1.1e-06 Score=68.39 Aligned_cols=79 Identities=20% Similarity=0.250 Sum_probs=65.9
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNI 267 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~I 267 (283)
...+.+|+|| +|.| ++++||+++|.+ ||. |+.|.+-. +++...||.|.|.+++....++...+. .|
T Consensus 13 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~---~~ 83 (116)
T 2cqd_A 13 KDTTFTKIFV---GGLPYHTTDASLRKYFEG-FGD--IEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP---II 83 (116)
T ss_dssp CSCSSSEEEE---ECCCSSCCHHHHHHHHHT-TSC--EEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC---EE
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-CCC--eeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC---cC
Confidence 4567799998 6887 999999999986 998 67776654 577889999999999999999987664 69
Q ss_pred cCceeEEEecccC
Q 048589 268 HGKDVRVRRFVPK 280 (283)
Q Consensus 268 ngk~iWaRky~pk 280 (283)
+|+.+-++...++
T Consensus 84 ~g~~l~V~~a~~~ 96 (116)
T 2cqd_A 84 DGRKANVNLAYLG 96 (116)
T ss_dssp TTEECEEEESTTT
T ss_pred CCEEEEEEEcccC
Confidence 9999988887554
No 12
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.52 E-value=1.3e-07 Score=72.45 Aligned_cols=81 Identities=22% Similarity=0.418 Sum_probs=66.0
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNI 267 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~I 267 (283)
.+++.+++|| +|.| ++++||+++|.+ ||+ |+.|.+.. +++...||.|.|.+++....+|.. + ...|
T Consensus 12 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~--~~~~ 82 (105)
T 2dh8_A 12 GADEIGKLFV---GGLDWSTTQETLRSYFSQ-YGE--VVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-R--PHTL 82 (105)
T ss_dssp CSSSSSEECC---BSCCTTCCHHHHHHHHHT-TSC--EEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-C--SEEE
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-C--CCeE
Confidence 4667789987 7888 999999999997 998 55555543 577789999999999999988875 2 3579
Q ss_pred cCceeEEEecccCCC
Q 048589 268 HGKDVRVRRFVPKRA 282 (283)
Q Consensus 268 ngk~iWaRky~pk~~ 282 (283)
+|+.+-++...||..
T Consensus 83 ~g~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 83 DGRNIDPKPCTPRGM 97 (105)
T ss_dssp TTEEEBCCCSCCSSC
T ss_pred CCEEEEEEEccCCCC
Confidence 999998888877753
No 13
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.52 E-value=7.8e-07 Score=67.80 Aligned_cols=83 Identities=14% Similarity=0.211 Sum_probs=65.1
Q ss_pred CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec-CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589 192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN-CRDQSLYARVIVRSPAFITLILGENELMQFNIH 268 (283)
Q Consensus 192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~-~~~qplfariVf~s~~~vd~vL~g~~~~kf~In 268 (283)
..+.+.+++|| +|.| ++++||+++|.+ ||+ |+.|.|.. .+....||.|.|.+.+....++..-+. ..|+
T Consensus 10 ~~~~~~~~l~V---~nlp~~~t~~~l~~~f~~-~G~--v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~ 81 (103)
T 2cq3_A 10 ESKSTPKRLHV---SNIPFRFRDPDLRQMFGQ-FGK--ILDVEIIFNERGSKGFGFVTFENSADADRAREKLHG--TVVE 81 (103)
T ss_dssp CCSCCCCEEEE---ESCCTTCCHHHHHHHGGG-TSC--EEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTT--CEET
T ss_pred CCCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCC--CEEC
Confidence 44667799999 6888 999999999996 998 67777655 455788999999999998877652111 1489
Q ss_pred CceeEEEecccCCC
Q 048589 269 GKDVRVRRFVPKRA 282 (283)
Q Consensus 269 gk~iWaRky~pk~~ 282 (283)
|+.+-++...|+..
T Consensus 82 g~~l~v~~a~~~~~ 95 (103)
T 2cq3_A 82 GRKIEVNNATARVM 95 (103)
T ss_dssp TEECEEEECCSSCC
T ss_pred CEEEEEEEcccCCC
Confidence 99999988887754
No 14
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.52 E-value=2.3e-07 Score=68.22 Aligned_cols=80 Identities=15% Similarity=0.133 Sum_probs=59.6
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIH 268 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~In 268 (283)
..+.+++|| +|.| ++++||+++|.+ ||+ |++|.+.. .++...||.|.|.+.+.....+..-+. ..++
T Consensus 3 ~~~~~~l~v---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~ 74 (87)
T 3bs9_A 3 LGSHFHVFV---GDLSPEITTAAIAAAFAP-FGR--ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG--QWLG 74 (87)
T ss_dssp ---CEEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT--CEET
T ss_pred CCCceEEEE---eCCCCCCCHHHHHHHHHh-cCC--EeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC--CEEC
Confidence 456789988 7887 999999999996 998 66666643 677789999999999998887653111 2589
Q ss_pred CceeEEEecccCC
Q 048589 269 GKDVRVRRFVPKR 281 (283)
Q Consensus 269 gk~iWaRky~pk~ 281 (283)
|+.+-++...||+
T Consensus 75 g~~l~v~~a~~kp 87 (87)
T 3bs9_A 75 GRQIRTNWATRKP 87 (87)
T ss_dssp TEECEEEEEC---
T ss_pred CeEEEEEecCCCC
Confidence 9999888777763
No 15
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.50 E-value=3.7e-07 Score=69.28 Aligned_cols=79 Identities=18% Similarity=0.182 Sum_probs=63.1
Q ss_pred ceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCcee
Q 048589 198 RTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N--CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDV 272 (283)
Q Consensus 198 RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~i 272 (283)
+++|| +|.| +||+||+++|.+ ||. -|++|.+- + ++++.+||+|.|.+++.....|.... -.+.|+|+.+
T Consensus 2 ~~i~v---~nLp~~~te~~l~~~F~~-~G~-~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~-~~~~~~gr~i 75 (91)
T 2lxi_A 2 NIVML---RMLPQAATEDDIRGQLQS-HGV-QAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQ-HSLNILGQKV 75 (91)
T ss_dssp CEEEE---ETCCSSCCHHHHHHHHHH-HTC-CCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTT-TEEEETTEEE
T ss_pred CEEEE---eCCCCCCCHHHHHHHHHH-hCC-EeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcC-CCeEECCEEE
Confidence 56777 9999 999999999996 994 37776553 3 68899999999999999888875321 1357999999
Q ss_pred EEEecccCCC
Q 048589 273 RVRRFVPKRA 282 (283)
Q Consensus 273 WaRky~pk~~ 282 (283)
-++...||+.
T Consensus 76 ~V~~a~~~~~ 85 (91)
T 2lxi_A 76 SMHYSDPKPK 85 (91)
T ss_dssp EEECCCSCCC
T ss_pred EEEEcCCCCC
Confidence 9988888764
No 16
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.49 E-value=6.4e-07 Score=66.14 Aligned_cols=75 Identities=17% Similarity=0.444 Sum_probs=61.2
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNI 267 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~I 267 (283)
.+++.+++|| +|.| +++++|+++|.+ ||. |+.+.+-. +++...||.|.|.+++....++.... -.+
T Consensus 7 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~---~~~ 77 (87)
T 3s7r_A 7 NEEDAGKMFV---GGLSWDTSKKDLKDYFTK-FGE--VVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKE---HRL 77 (87)
T ss_dssp CCSCTTEEEE---ECCCTTCCHHHHHHHHTT-TSC--EEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSC---EEE
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-CCC--EEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCC---CEE
Confidence 4567899998 7888 999999999975 998 66666643 57788999999999999999987543 259
Q ss_pred cCceeEEEe
Q 048589 268 HGKDVRVRR 276 (283)
Q Consensus 268 ngk~iWaRk 276 (283)
+|+.+-+++
T Consensus 78 ~g~~i~v~~ 86 (87)
T 3s7r_A 78 DGRVIDPKK 86 (87)
T ss_dssp TTEEEEEEE
T ss_pred CCEEEEEEe
Confidence 999997764
No 17
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.48 E-value=8.7e-07 Score=67.26 Aligned_cols=80 Identities=15% Similarity=0.280 Sum_probs=63.9
Q ss_pred CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHh---CCCCee
Q 048589 192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLIL---GENELM 263 (283)
Q Consensus 192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL---~g~~~~ 263 (283)
..+++.+++|| +|.| ++++||+++|.+ ||+ |+.|.+.. +++...||.|.|.+++....++ +|.
T Consensus 7 ~~~~~~~~l~v---~nLp~~~t~~~l~~~f~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--- 77 (102)
T 1x5s_A 7 GMASDEGKLFV---GGLSFDTNEQSLEQVFSK-YGQ--ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK--- 77 (102)
T ss_dssp CCCCCCSEEEE---ESCCTTCCHHHHHHHHHH-HSC--CCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTC---
T ss_pred CCCCCCCEEEE---ECCCCCCCHHHHHHHHHh-cCC--eEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCC---
Confidence 45678899999 6887 999999999986 998 66776654 5677889999999999877776 454
Q ss_pred eEEEcCceeEEEecccCCC
Q 048589 264 QFNIHGKDVRVRRFVPKRA 282 (283)
Q Consensus 264 kf~Ingk~iWaRky~pk~~ 282 (283)
.|+|+.+-++...|++.
T Consensus 78 --~~~g~~l~v~~a~~~~~ 94 (102)
T 1x5s_A 78 --SVDGRQIRVDQAGKSSD 94 (102)
T ss_dssp --CTTSCCCEEEEEECCCC
T ss_pred --EECCeEEEEEECCCCCC
Confidence 37999998877766653
No 18
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=3.9e-07 Score=68.20 Aligned_cols=81 Identities=16% Similarity=0.264 Sum_probs=63.7
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIH 268 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~In 268 (283)
++..+++|| +|.| ++++||+++|.+ ||+ |+.|.+.. +++...||.|.|.+.+....++...+. ..|+
T Consensus 2 ~~~~~~l~v---~nlp~~~t~~~l~~~f~~-~G~--v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~ 73 (95)
T 2dnz_A 2 SSGSSGLYV---GSLHFNITEDMLRGIFEP-FGK--IDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNG--FELA 73 (95)
T ss_dssp CSCCCEEEE---ESCCTTCCHHHHHHHHTT-TSC--EEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTT--CCSS
T ss_pred CCCCcEEEE---eCCCCCCCHHHHHHHHHh-cCC--EeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCC--CeeC
Confidence 567789999 6877 999999999986 998 66666654 577889999999999997777642111 2579
Q ss_pred CceeEEEecccCCC
Q 048589 269 GKDVRVRRFVPKRA 282 (283)
Q Consensus 269 gk~iWaRky~pk~~ 282 (283)
|+.+-++...|+..
T Consensus 74 g~~l~V~~a~~~~~ 87 (95)
T 2dnz_A 74 GRPMRVGHVTERLD 87 (95)
T ss_dssp SSCCEEEESSCCCC
T ss_pred CcEEEEEEcccccC
Confidence 99999998887764
No 19
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.48 E-value=6.8e-07 Score=68.98 Aligned_cols=82 Identities=21% Similarity=0.332 Sum_probs=65.9
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGK 270 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk 270 (283)
.+.+.+++|| +|.| ++++||+++|.+ ||. |+.|.+...++...||.|.|.+.+..+.++...+. ..|+|+
T Consensus 18 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~--v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~ 89 (109)
T 1x4a_A 18 AGNNDCRIYV---GNLPPDIRTKDIEDVFYK-YGA--IRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG--YDYDGY 89 (109)
T ss_dssp CCCCSSEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTT--CEETTE
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCC--CEECCe
Confidence 4567799998 6877 999999999997 999 88888866666789999999999998887742111 257999
Q ss_pred eeEEEecccCCC
Q 048589 271 DVRVRRFVPKRA 282 (283)
Q Consensus 271 ~iWaRky~pk~~ 282 (283)
.+-++...|+++
T Consensus 90 ~l~V~~a~~~~~ 101 (109)
T 1x4a_A 90 RLRVEFPRSGRG 101 (109)
T ss_dssp ECEEECCCCCCC
T ss_pred EEEEEEcccCCC
Confidence 999988877654
No 20
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=4.2e-07 Score=68.98 Aligned_cols=82 Identities=18% Similarity=0.179 Sum_probs=65.9
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIH 268 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~In 268 (283)
.+.+.+++|| +|.| ++++||+++|.+ ||+ |+.|.+.. .++...||.|.|.+.+....++..-+. ..++
T Consensus 13 ~~~~~~~l~v---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~ 84 (100)
T 2do4_A 13 TSLEKHKLFI---SGLPFSCTKEELEEICKA-HGT--VKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDG--MTIK 84 (100)
T ss_dssp SCCCCSCEEE---ESCCTTCCHHHHHHHHTT-TSC--EEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT--EESS
T ss_pred cCCCCCEEEE---eCCCCCCCHHHHHHHHHh-CCC--eEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCC--CEEC
Confidence 3566789999 6888 999999999996 998 66666654 577789999999999998887742111 4689
Q ss_pred CceeEEEecccCCC
Q 048589 269 GKDVRVRRFVPKRA 282 (283)
Q Consensus 269 gk~iWaRky~pk~~ 282 (283)
|+.+-++...|++.
T Consensus 85 g~~l~v~~a~~~~~ 98 (100)
T 2do4_A 85 ENIIKVAISNSGPS 98 (100)
T ss_dssp SCEEEEEECCCCSC
T ss_pred CEEEEEEECCCCCC
Confidence 99999999888865
No 21
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.46 E-value=2e-06 Score=65.52 Aligned_cols=81 Identities=21% Similarity=0.246 Sum_probs=62.9
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec-CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN-CRDQSLYARVIVRSPAFITLILGENELMQFNIHG 269 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~-~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing 269 (283)
...+.+++|| +|.| ++++||+++|.+ ||. |+.|.|.. .+....||+|.|.+.+....++..-+. ..|+|
T Consensus 11 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g 82 (103)
T 2cqi_A 11 DDGQPRTLYV---GNLSRDVTEVLILQLFSQ-IGP--CKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNG--RKILG 82 (103)
T ss_dssp CSCCCCEEEE---ESCCTTCCHHHHHHHHHH-HSC--EEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTT--EEETT
T ss_pred CCCCCCEEEE---eCCCccCCHHHHHHHHHh-cCC--EeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCC--CCcCC
Confidence 3556789998 7888 999999999986 998 77777655 445678999999999998777652221 25899
Q ss_pred ceeEEEecccCC
Q 048589 270 KDVRVRRFVPKR 281 (283)
Q Consensus 270 k~iWaRky~pk~ 281 (283)
+.+-++...|++
T Consensus 83 ~~l~V~~a~~~~ 94 (103)
T 2cqi_A 83 KEVKVNWATTPS 94 (103)
T ss_dssp EEEEEEECCCTT
T ss_pred CeEEEEECCCCc
Confidence 999888777654
No 22
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.45 E-value=8.6e-07 Score=69.10 Aligned_cols=80 Identities=20% Similarity=0.327 Sum_probs=66.1
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIH 268 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~In 268 (283)
+++.+++|| +|.| ++++||+++|.+ ||+ |+.|.+.. +++...||+|.|.+.+....++.. + ...|+
T Consensus 24 ~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~--i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~--~~~~~ 94 (116)
T 1x4b_A 24 KEQFRKLFI---GGLSFETTEESLRNYYEQ-WGK--LTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-R--PHSID 94 (116)
T ss_dssp HHHHTEEEE---ECCTTCCCHHHHHHHHTS-SCC--CSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-C--SEEET
T ss_pred cCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--EEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-C--CcEEC
Confidence 445689988 7888 999999999976 998 55555543 577889999999999999999987 3 35789
Q ss_pred CceeEEEecccCCC
Q 048589 269 GKDVRVRRFVPKRA 282 (283)
Q Consensus 269 gk~iWaRky~pk~~ 282 (283)
|+.+-++...||..
T Consensus 95 g~~l~V~~a~~~~~ 108 (116)
T 1x4b_A 95 GRVVEPKRAVAREE 108 (116)
T ss_dssp TEEEEEECCSSCCC
T ss_pred CEEEEEEECCCCcc
Confidence 99999999888764
No 23
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.44 E-value=8.3e-07 Score=66.52 Aligned_cols=81 Identities=14% Similarity=0.167 Sum_probs=63.6
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEE-Ee-ec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDI-KM-GN--CRDQSLYARVIVRSPAFITLILGENELMQFNI 267 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v-~m-~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~I 267 (283)
+.+.+|+|| +|.| ++++||+++|.+ ||. |+.+ .+ .+ .++...||.|.|.+++....++...+.. .|
T Consensus 2 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~--i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~--~~ 73 (96)
T 1x5t_A 2 SSGSSGIFI---GNLDPEIDEKLLYDTFSA-FGV--ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQ--YL 73 (96)
T ss_dssp CSCCCEEEE---ECCCTTCCHHHHHHHHHT-TSC--BSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTC--EE
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCC--EE
Confidence 456789999 6888 999999999997 998 5444 33 32 6778899999999999988887643322 47
Q ss_pred cCceeEEEecccCCC
Q 048589 268 HGKDVRVRRFVPKRA 282 (283)
Q Consensus 268 ngk~iWaRky~pk~~ 282 (283)
+|+.+-++...|++.
T Consensus 74 ~g~~l~v~~a~~~~~ 88 (96)
T 1x5t_A 74 CNRPITVSYAFKKDS 88 (96)
T ss_dssp TTEECEEEESCCCCC
T ss_pred CCEEEEEEEecccCC
Confidence 999999988877654
No 24
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.44 E-value=6.3e-07 Score=68.07 Aligned_cols=83 Identities=20% Similarity=0.294 Sum_probs=65.8
Q ss_pred CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEE
Q 048589 192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFN 266 (283)
Q Consensus 192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~ 266 (283)
..+++.+++|| +|.| ++++||+++|.+ ||+ |+.|.+.. +++...||.|.|.+.+....++...+. ..
T Consensus 7 ~~~~~~~~l~V---~nLp~~~t~~~l~~~f~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~ 78 (102)
T 2cqb_A 7 GMATTKRVLYV---GGLAEEVDDKVLHAAFIP-FGD--ITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE--SE 78 (102)
T ss_dssp CSCCCCSCEEE---ESCCSSCCHHHHHHHHTT-TSC--CCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTT--EE
T ss_pred CcCCCCCEEEE---eCCCCCCCHHHHHHHhhc-cCC--EEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCC--CE
Confidence 34667899999 7888 999999999987 998 66666643 578899999999999998877742111 36
Q ss_pred EcCceeEEEecccCCC
Q 048589 267 IHGKDVRVRRFVPKRA 282 (283)
Q Consensus 267 Ingk~iWaRky~pk~~ 282 (283)
|+|+.+-++...|++.
T Consensus 79 ~~g~~l~V~~a~~~~~ 94 (102)
T 2cqb_A 79 LFGRTIRVNLAKPMRI 94 (102)
T ss_dssp ETTEEEEEEECCCCCC
T ss_pred ECCcEEEEEeCCCCCC
Confidence 8999999988887764
No 25
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.43 E-value=2.6e-06 Score=68.20 Aligned_cols=83 Identities=24% Similarity=0.328 Sum_probs=65.3
Q ss_pred CCCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeE
Q 048589 191 ANDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQF 265 (283)
Q Consensus 191 ~~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf 265 (283)
...+++.|++|| +|.| ++++||+++|.+ ||+ |+.|.+-. +++...||+|.|.+.+....++..-+. .
T Consensus 36 ~~~~~~~~~l~V---~nLp~~~~~~~l~~~F~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~ 107 (139)
T 1u6f_A 36 NPEPDVLRNLMV---NYIPTTVDEVQLRQLFER-YGP--IESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNG--F 107 (139)
T ss_dssp SCCTTTTSEEEE---ESCSTTCCHHHHHHHHHH-HSC--EEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTT--E
T ss_pred CCCCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCC--C
Confidence 345667899999 7888 999999999997 998 66676653 567789999999999998887763222 3
Q ss_pred EEcCceeEEEecccCC
Q 048589 266 NIHGKDVRVRRFVPKR 281 (283)
Q Consensus 266 ~Ingk~iWaRky~pk~ 281 (283)
.|+|+.+-++...+++
T Consensus 108 ~~~g~~l~v~~a~~~~ 123 (139)
T 1u6f_A 108 NILNKRLKVALAASGH 123 (139)
T ss_dssp ECSSCEEEEEESSCCC
T ss_pred EECCeEEEEEECCCCC
Confidence 5899999888777654
No 26
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.43 E-value=2.8e-07 Score=70.24 Aligned_cols=78 Identities=26% Similarity=0.396 Sum_probs=63.6
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIHG 269 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing 269 (283)
..+.+|+|| +|.| ++++||+++|.+ ||+ |+.|.|.. .++...||.|.|.+.+..+..+. -...++|
T Consensus 6 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~----~~~~~~g 75 (102)
T 2xs2_A 6 KIMPNTVFV---GGIDVRMDETEIRSFFAR-YGS--VKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE----SQINFHG 75 (102)
T ss_dssp EEEEEEEEE---ECCCTTCCHHHHHHHHGG-GSC--EEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT----CCCEETT
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-CCC--eEEEEEEECCCCCccceEEEEECCHHHHHHHHh----CCCeECC
Confidence 345688888 7888 999999999986 998 66666654 67788999999999999999998 2347999
Q ss_pred ceeEEEecccCC
Q 048589 270 KDVRVRRFVPKR 281 (283)
Q Consensus 270 k~iWaRky~pk~ 281 (283)
+.+-+.+..||.
T Consensus 76 ~~l~v~~a~~~~ 87 (102)
T 2xs2_A 76 KKLKLGPAIRKQ 87 (102)
T ss_dssp EECEEEEEEECC
T ss_pred EEEEEEECCcCc
Confidence 999888777664
No 27
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.43 E-value=6.2e-07 Score=70.30 Aligned_cols=81 Identities=10% Similarity=0.062 Sum_probs=65.2
Q ss_pred CCCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCcee-eEEEee-c-CCCCCceEEEEecChHHHHHHhCCCCeeeE
Q 048589 191 ANDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCV-EDIKMG-N-CRDQSLYARVIVRSPAFITLILGENELMQF 265 (283)
Q Consensus 191 ~~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cv-e~v~m~-~-~~~qplfariVf~s~~~vd~vL~g~~~~kf 265 (283)
...+.+.+|+|| +|.| ++++||++||.. ||. | +.|.|- + .++...||+|.|.+++.....|.- + ..
T Consensus 9 ~~~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~g~--v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~--~~ 79 (114)
T 2cpy_A 9 GDVNSAKVCAHI---TNIPFSITKMDVLQFLEG-IPV--DENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-H--RK 79 (114)
T ss_dssp CSCCSCCCEEEE---ESCCTTSCHHHHHHHTTT-SCC--CSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-C--SE
T ss_pred CCCCCCccEEEE---eCcCCcCCHHHHHHHHHh-CCC--cCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-C--CC
Confidence 356778899988 8988 999999999987 897 5 444443 3 788899999999999999999875 2 25
Q ss_pred EEcCceeEEEecccC
Q 048589 266 NIHGKDVRVRRFVPK 280 (283)
Q Consensus 266 ~Ingk~iWaRky~pk 280 (283)
.|+|+.+-++...|+
T Consensus 80 ~~~gr~i~v~~a~~~ 94 (114)
T 2cpy_A 80 KLNGREAFVHVVTLE 94 (114)
T ss_dssp EETTEEEEEEEECHH
T ss_pred ccCCeEEEEEECCHH
Confidence 789999988776554
No 28
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.42 E-value=1.9e-06 Score=65.74 Aligned_cols=82 Identities=11% Similarity=0.212 Sum_probs=64.6
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec----CCCCCceEEEEecChHHHHHHhCCC-CeeeE
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN----CRDQSLYARVIVRSPAFITLILGEN-ELMQF 265 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~----~~~qplfariVf~s~~~vd~vL~g~-~~~kf 265 (283)
...+.+++|| +|.| ++++||+++|.+ ||+ |+.|.|.. .++...||+|.|.+.+....++... + ..
T Consensus 11 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~--~~ 82 (107)
T 2cph_A 11 KKQTTSKILV---RNIPFQANQREIRELFST-FGE--LKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCH--ST 82 (107)
T ss_dssp CSSCCCCEEE---ESCCTTCCHHHHHHHHHT-TSC--EEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHT--CC
T ss_pred cCCCCCEEEE---eCCCCcCCHHHHHHHHHc-cCC--eEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhcc--CC
Confidence 3556789998 7888 999999999997 998 77777742 6778899999999999988776421 1 12
Q ss_pred EEcCceeEEEecccCCC
Q 048589 266 NIHGKDVRVRRFVPKRA 282 (283)
Q Consensus 266 ~Ingk~iWaRky~pk~~ 282 (283)
.|+|+.+-++...|++.
T Consensus 83 ~~~g~~l~v~~a~~~~~ 99 (107)
T 2cph_A 83 HLYGRRLVLEWADSEVT 99 (107)
T ss_dssp BSSSCBCEEEECCCCCC
T ss_pred eECCCEEEEEeCCCCCC
Confidence 58899998888877654
No 29
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.42 E-value=4.5e-07 Score=69.15 Aligned_cols=81 Identities=15% Similarity=0.178 Sum_probs=65.0
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIH 268 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~In 268 (283)
.++.+++|| +|.| ++++||+++|.+ ||+ |+.|.+.. .++...||.|.|.+.+....++...+. ..|+
T Consensus 12 ~~~~~~l~V---~nlp~~~t~~~l~~~f~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~ 83 (103)
T 2cq0_A 12 ADDNATIRV---TNLSEDTRETDLQELFRP-FGS--ISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG--FGYD 83 (103)
T ss_dssp CSSSEEEEE---ESCCTTCCHHHHHTTSTT-TCC--EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTT--CEET
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-CCC--eEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCC--CeeC
Confidence 567799998 6888 999999999996 998 66776654 577788999999999998877763221 2589
Q ss_pred CceeEEEecccCCC
Q 048589 269 GKDVRVRRFVPKRA 282 (283)
Q Consensus 269 gk~iWaRky~pk~~ 282 (283)
|+.+-++...|++.
T Consensus 84 g~~l~v~~a~~~~~ 97 (103)
T 2cq0_A 84 HLILNVEWAKPSTN 97 (103)
T ss_dssp TEECEEEESSCCCC
T ss_pred CcEEEEEECCCCCC
Confidence 99999988887764
No 30
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.42 E-value=4.9e-07 Score=70.69 Aligned_cols=73 Identities=18% Similarity=0.226 Sum_probs=59.7
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIHG 269 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing 269 (283)
..+.||+|| +|.| +|++||+++|.+ ||+ |++|.|-. .++..+||+|.|.+++....++. .+ ...++|
T Consensus 8 ~~~~~~lfV---~~Lp~~~te~~L~~~F~~-~G~--v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~--~~~~~g 78 (103)
T 1s79_A 8 DVKNRSVYI---KGFPTDATLDDIKEWLED-KGQ--VLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TP--GQKYKE 78 (103)
T ss_dssp CSGGGCEEE---ECCCTTCCHHHHHHHHHT-SSC--EEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SS--CCCCTT
T ss_pred cCCCCEEEE---ECCCCCCCHHHHHHHHhh-cCC--EEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cC--CCEECC
Confidence 445699998 8988 999999999996 998 67777754 57788999999999999998887 22 236899
Q ss_pred ceeEEE
Q 048589 270 KDVRVR 275 (283)
Q Consensus 270 k~iWaR 275 (283)
+.+-++
T Consensus 79 r~l~V~ 84 (103)
T 1s79_A 79 TDLLIL 84 (103)
T ss_dssp TTCEEE
T ss_pred EEEEEE
Confidence 988655
No 31
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=1.3e-06 Score=67.03 Aligned_cols=84 Identities=19% Similarity=0.175 Sum_probs=66.8
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c---CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N---CRDQSLYARVIVRSPAFITLILGENELMQFNI 267 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~I 267 (283)
+.+.+|+|| +|.| ++++||+++|.+ ||+ .|+.|.+- . +++...||+|.|.+.+.....+..-+.-.+.+
T Consensus 5 s~~~~~l~V---~nLp~~~t~~~l~~~f~~-~G~-~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~ 79 (109)
T 2dis_A 5 SSGNCRLFI---GGIPKMKKREEILEEIAK-VTE-GVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL 79 (109)
T ss_dssp CCCSEEEEE---ECCCTTSCHHHHHHHHHH-HST-TEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB
T ss_pred ccCCCEEEE---eCCCCcCCHHHHHHHHHH-hcC-CceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee
Confidence 557899998 7888 999999999997 997 68888875 2 56889999999999999888876432111368
Q ss_pred cCceeEEEecccCCC
Q 048589 268 HGKDVRVRRFVPKRA 282 (283)
Q Consensus 268 ngk~iWaRky~pk~~ 282 (283)
+|+.+-++...|++.
T Consensus 80 ~g~~l~V~~a~~~~~ 94 (109)
T 2dis_A 80 WGHQIAVDWAEPEID 94 (109)
T ss_dssp TTBCCEEEESCSSCS
T ss_pred cCCeEEEEEcCCCCC
Confidence 999998887777653
No 32
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.40 E-value=8.8e-07 Score=67.52 Aligned_cols=81 Identities=19% Similarity=0.168 Sum_probs=63.1
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIH 268 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~In 268 (283)
.++.+|+|| +|.| ++++||+++|.+ ||. |+.|.+.. +++...||.|.|.+.+....++..-+. ..++
T Consensus 10 ~~~~~~l~V---~nLp~~~t~~~l~~~f~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~ 81 (103)
T 2dnm_A 10 VDGMITLKV---DNLTYRTSPDSLRRVFEK-YGR--VGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDG--AELD 81 (103)
T ss_dssp CSCCCEEEE---ESCCTTCCHHHHHHHHTT-TSC--EEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSS--CCBT
T ss_pred CCCCeEEEE---eCCCCCCCHHHHHHHHHh-cCC--EEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCC--CEEC
Confidence 456789998 6888 999999999996 998 77777754 577889999999999887777652111 1389
Q ss_pred CceeEEEecccCCC
Q 048589 269 GKDVRVRRFVPKRA 282 (283)
Q Consensus 269 gk~iWaRky~pk~~ 282 (283)
|+.+-++...++++
T Consensus 82 g~~l~V~~a~~~~~ 95 (103)
T 2dnm_A 82 GRELRVQVARYGRR 95 (103)
T ss_dssp TBCCEEEECSSCCS
T ss_pred CcEEEEEECCcCCC
Confidence 99998887776543
No 33
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.40 E-value=1.2e-06 Score=64.37 Aligned_cols=80 Identities=18% Similarity=0.230 Sum_probs=62.1
Q ss_pred CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---C-CCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589 195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---C-RDQSLYARVIVRSPAFITLILGENELMQFNIH 268 (283)
Q Consensus 195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~-~~qplfariVf~s~~~vd~vL~g~~~~kf~In 268 (283)
...+|+|| +|.| ++++||+++|.+ ||+ |+.+.+.. + ++...||.|.|.+.+....++..-+. ..++
T Consensus 2 ~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~ 73 (88)
T 4a8x_A 2 MKPTKVHI---GRLTRNVTKDHIMEIFST-YGK--IKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDG--GQID 73 (88)
T ss_dssp CCCCEEEE---ECCCTTCCHHHHHHHHHT-TSC--EEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTT--CEET
T ss_pred CCCCEEEE---eCCCCCCCHHHHHHHHHh-CCC--EEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCC--CeEC
Confidence 34578888 7888 999999999986 998 77777754 2 23788999999999998777652111 2589
Q ss_pred CceeEEEecccCCC
Q 048589 269 GKDVRVRRFVPKRA 282 (283)
Q Consensus 269 gk~iWaRky~pk~~ 282 (283)
|+.+-+....|+++
T Consensus 74 g~~l~v~~a~~~~~ 87 (88)
T 4a8x_A 74 GQEITATAVLAPWP 87 (88)
T ss_dssp TEECEEEEECCCCC
T ss_pred CeEEEEEECCCCCC
Confidence 99999998887764
No 34
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.40 E-value=2.8e-06 Score=64.33 Aligned_cols=80 Identities=16% Similarity=0.162 Sum_probs=63.5
Q ss_pred CCCCCCceEEEEccCCccCCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCce
Q 048589 192 NDADTDRTLFATFSKGHPITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKD 271 (283)
Q Consensus 192 ~~~~d~RT~FvTFS~G~Pvse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~ 271 (283)
..+.+.+|+|| +|+.++++||+++|.+ ||+ |+.|.| ++...||+|.|.+.+.....+..-+. ..|+|+.
T Consensus 10 ~~~~~~~~l~V---~n~~~t~~~l~~~F~~-~G~--i~~v~i---~~~~g~afV~f~~~~~a~~Ai~~l~g--~~~~g~~ 78 (97)
T 1x5p_A 10 RAPRKGNTLYV---YGEDMTPTLLRGAFSP-FGN--IIDLSM---DPPRNCAFVTYEKMESADQAVAELNG--TQVESVQ 78 (97)
T ss_dssp CCCCCCSEEEE---ECSSCCHHHHHHHHTT-TSC--EEEEEE---ETTTTEEEEEESSHHHHHHHHHHTTT--EEETTEE
T ss_pred CCCCCCCEEEE---cCCCCCHHHHHHHHhh-CCC--EEEEEe---cCCCCEEEEEECCHHHHHHHHHHhCC--CeECCeE
Confidence 44567789999 4689999999999986 998 788888 35667999999999998887753222 2579999
Q ss_pred eEEEecccCCC
Q 048589 272 VRVRRFVPKRA 282 (283)
Q Consensus 272 iWaRky~pk~~ 282 (283)
+-++...|++.
T Consensus 79 l~v~~a~~~~~ 89 (97)
T 1x5p_A 79 LKVNIARKQPM 89 (97)
T ss_dssp EEEECCSSCCC
T ss_pred EEEEECCCCCC
Confidence 98887776653
No 35
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.39 E-value=6.2e-07 Score=66.72 Aligned_cols=78 Identities=17% Similarity=0.163 Sum_probs=62.8
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec-CCCCCceEEEEecChHHHHHHhC---CCCeeeEEE
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN-CRDQSLYARVIVRSPAFITLILG---ENELMQFNI 267 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~-~~~qplfariVf~s~~~vd~vL~---g~~~~kf~I 267 (283)
+.+.+++|| +|.| ++++||+++|.+ ||+ |+.+.+.. .++...||.|.|.+.+....++. |. .+
T Consensus 5 ~~~~~~l~V---~nlp~~~t~~~l~~~f~~-~G~--v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~-----~~ 73 (92)
T 2dgv_A 5 SSGACQIFV---RNLPFDFTWKMLKDKFNE-CGH--VLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGM-----KL 73 (92)
T ss_dssp SSSCCEEEE---CSCCTTCCHHHHHHHHHT-TSC--EEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTC-----CB
T ss_pred CCCCcEEEE---eCCCCCCCHHHHHHHHHh-cCC--EEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCC-----EE
Confidence 456789988 8888 999999999997 998 66666654 77888999999999998877754 43 38
Q ss_pred cCceeEEEecccCCC
Q 048589 268 HGKDVRVRRFVPKRA 282 (283)
Q Consensus 268 ngk~iWaRky~pk~~ 282 (283)
+|+.+-++...|++.
T Consensus 74 ~g~~l~v~~a~~~~~ 88 (92)
T 2dgv_A 74 SGREIDVRIDRNASG 88 (92)
T ss_dssp TTBCCCCEECSCCSS
T ss_pred CCcEEEEEEcCCCCC
Confidence 999998777766553
No 36
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.39 E-value=1.2e-06 Score=66.04 Aligned_cols=81 Identities=16% Similarity=0.173 Sum_probs=63.6
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec-C---C--CCCceEEEEecChHHHHHHhCCCCeeeE
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN-C---R--DQSLYARVIVRSPAFITLILGENELMQF 265 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~-~---~--~qplfariVf~s~~~vd~vL~g~~~~kf 265 (283)
+.+.+++|| +|.| ++++||+++|.+ ||+ |+.|.+.. . + +...||.|.|.+.+....++..-+. .
T Consensus 2 s~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g--~ 73 (98)
T 2cpf_A 2 SSGSSGLFI---KNLNFSTTEETLKGVFSK-VGA--IKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQG--H 73 (98)
T ss_dssp CCCCCCEEE---ESCCTTCCHHHHHHHHHT-TSC--EEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTT--C
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCC--C
Confidence 457789999 7888 999999999985 998 67777654 2 2 6678999999999998887763221 1
Q ss_pred EEcCceeEEEecccCCC
Q 048589 266 NIHGKDVRVRRFVPKRA 282 (283)
Q Consensus 266 ~Ingk~iWaRky~pk~~ 282 (283)
.|+|+.+-++...|+.+
T Consensus 74 ~~~g~~l~V~~a~~~~~ 90 (98)
T 2cpf_A 74 TVDGHKLEVRISERATK 90 (98)
T ss_dssp EETTEECEEECSSCSSC
T ss_pred eeCCeEEEEEEccCCCC
Confidence 68999999988877654
No 37
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=7.6e-07 Score=69.78 Aligned_cols=83 Identities=19% Similarity=0.285 Sum_probs=62.2
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--C---CCCCceEEEEecChHHHHHHh------CCC
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--C---RDQSLYARVIVRSPAFITLIL------GEN 260 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~---~~qplfariVf~s~~~vd~vL------~g~ 260 (283)
..+.|++|| +|.| ++++||+++|.+ ||+ .. ...+.+ + ++...||+|.|.+++....++ +|.
T Consensus 5 ~~~~~~lfV---gnLp~~~te~~L~~~F~~-~G~-i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~ 78 (114)
T 2dnl_A 5 SSGSRKVFV---GGLPPDIDEDEITASFRR-FGP-LV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGK 78 (114)
T ss_dssp SSCCCCEEE---ECCCTTCCHHHHHHHTTT-TCC-CC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTE
T ss_pred CCCCCEEEE---cCCCCCCCHHHHHHHHHh-cCC-EE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCc
Confidence 456799998 7888 999999999996 998 55 444444 3 688999999999999988777 443
Q ss_pred CeeeE---EEcCceeEEEecccCCC
Q 048589 261 ELMQF---NIHGKDVRVRRFVPKRA 282 (283)
Q Consensus 261 ~~~kf---~Ingk~iWaRky~pk~~ 282 (283)
....- .+.+|.+++|.+.+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~v~p~~~~d~ 103 (114)
T 2dnl_A 79 LYLCVSSPTIKDKPVQIRPWNLSDS 103 (114)
T ss_dssp EEEEECCSSSCSEEEEEECCCCCCC
T ss_pred EEEeccCCCcCCCeeeccCCcccCC
Confidence 21111 46678889988877654
No 38
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.36 E-value=1.3e-06 Score=67.91 Aligned_cols=82 Identities=18% Similarity=0.221 Sum_probs=63.8
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNI 267 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~I 267 (283)
..++.+++|| +|.| ++++||+++|.+ ||+ |+.|.|.. .++...||+|.|.+.+....++..-+. ..|
T Consensus 21 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~ 92 (115)
T 2cpz_A 21 EGPEGANLFI---YHLPQEFGDQDLLQMFMP-FGN--VVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNG--FQI 92 (115)
T ss_dssp CCSTTCCEEE---ESCCSSCCHHHHHHHHGG-GSC--CSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTT--CEE
T ss_pred CCCCCcEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCC--CEE
Confidence 3456789998 7888 999999999996 998 55665543 577789999999999998887742111 258
Q ss_pred cCceeEEEecccCCC
Q 048589 268 HGKDVRVRRFVPKRA 282 (283)
Q Consensus 268 ngk~iWaRky~pk~~ 282 (283)
+|+.+-++...|++.
T Consensus 93 ~g~~l~V~~a~~~~~ 107 (115)
T 2cpz_A 93 GMKRLKVQLKRSKND 107 (115)
T ss_dssp TTEECEEECCCCSCC
T ss_pred CCEEEEEEEcCCCCc
Confidence 999999888777654
No 39
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.36 E-value=1.4e-06 Score=67.13 Aligned_cols=82 Identities=20% Similarity=0.165 Sum_probs=64.2
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNI 267 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~I 267 (283)
...+.+|+|| +|.| ++++||+++|.+ ||+ |+.|.|-. +++...||.|.|.+.+....++..-+. ..|
T Consensus 22 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g--~~~ 93 (110)
T 1oo0_B 22 RSVEGWILFV---TSIHEEAQEDEIQEKFCD-YGE--IKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG--AEI 93 (110)
T ss_dssp CBTTBEEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTT--CEE
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--EEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCC--CEE
Confidence 3456789998 7888 999999999986 998 77777753 577789999999999998777652111 257
Q ss_pred cCceeEEEecccCCC
Q 048589 268 HGKDVRVRRFVPKRA 282 (283)
Q Consensus 268 ngk~iWaRky~pk~~ 282 (283)
+|+.+-++...|+++
T Consensus 94 ~g~~l~V~~a~~~~~ 108 (110)
T 1oo0_B 94 MGQTIQVDWCFVKGP 108 (110)
T ss_dssp TTEECEEEESEESSC
T ss_pred CCcEEEEEEcccCCC
Confidence 999998887776654
No 40
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.35 E-value=9.4e-07 Score=67.35 Aligned_cols=83 Identities=18% Similarity=0.091 Sum_probs=64.6
Q ss_pred CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec-CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589 192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN-CRDQSLYARVIVRSPAFITLILGENELMQFNIH 268 (283)
Q Consensus 192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~-~~~qplfariVf~s~~~vd~vL~g~~~~kf~In 268 (283)
..+.+.+++|| +|.| ++++||+++|.+ ||+ |+.|.|.. .++...||.|.|.+.+....++...+. ..|+
T Consensus 10 ~~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g--~~~~ 81 (103)
T 2d9p_A 10 ITRYQVVNLYV---KNLDDGIDDERLRKAFSP-FGT--ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG--RIVA 81 (103)
T ss_dssp CCCSSCCCEEE---ECCCTTCCHHHHHHTTTT-TSC--EEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTT--CBSS
T ss_pred cCCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--EEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCC--CEeC
Confidence 44667899999 6888 999999999996 998 66676654 677889999999999998777652111 1369
Q ss_pred CceeEEEecccCCC
Q 048589 269 GKDVRVRRFVPKRA 282 (283)
Q Consensus 269 gk~iWaRky~pk~~ 282 (283)
|+.+-++...|++.
T Consensus 82 g~~l~V~~a~~~~~ 95 (103)
T 2d9p_A 82 TKPLYVALAQRKEE 95 (103)
T ss_dssp SSBCEEEECSSCCC
T ss_pred CcEEEEEEeccccc
Confidence 99998888777653
No 41
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.35 E-value=7.9e-07 Score=67.96 Aligned_cols=81 Identities=16% Similarity=0.205 Sum_probs=63.5
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIH 268 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~In 268 (283)
..+.+|+|| +|.| ++++||+++|.+ ||+ |+.|.+.. +++...||.|.|.+.+....++..-+. ..|+
T Consensus 20 ~~~~~~l~V---~nlp~~~t~~~l~~~f~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~ 91 (106)
T 1p27_B 20 SVEGWILFV---TGVHEEATEEDIHDKFAE-YGE--IKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNG--QDLM 91 (106)
T ss_dssp BTTBEEEEE---ECCCTTCCHHHHHHHHGG-GSC--EEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTT--CBSS
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHhc-cCC--eEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcC--CEEC
Confidence 456789998 6888 999999999986 998 66666653 577889999999999987777652111 1588
Q ss_pred CceeEEEecccCCC
Q 048589 269 GKDVRVRRFVPKRA 282 (283)
Q Consensus 269 gk~iWaRky~pk~~ 282 (283)
|+.+-++...|+++
T Consensus 92 g~~l~V~~a~~~~~ 105 (106)
T 1p27_B 92 GQPISVDWCFVRGP 105 (106)
T ss_dssp SSBCEEEESEESSC
T ss_pred CcEEEEEeecCCCC
Confidence 99998888877764
No 42
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.35 E-value=1.6e-06 Score=68.15 Aligned_cols=79 Identities=16% Similarity=0.235 Sum_probs=60.2
Q ss_pred CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec-CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCce
Q 048589 195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN-CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKD 271 (283)
Q Consensus 195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~-~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~ 271 (283)
....++|| +|.| ++++||+++|.+ ||+ |++|.+-. .+....||+|.|.+.+.....+...+. ..|+||.
T Consensus 3 ~~~~~lfV---~nLp~~~te~~L~~~F~~-~G~--v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~--~~~~g~~ 74 (115)
T 4f25_A 3 LGSGNIFI---KNLDKSIDNKALYDTFSA-FGN--ILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG--MLLNDRK 74 (115)
T ss_dssp --CCEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTT--CEETTEE
T ss_pred CCCCEEEE---CCCCCCCCHHHHHHHHhc-cCC--EEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCC--CEECCEE
Confidence 34557888 8888 999999999986 998 66666544 555678999999999998777642111 2689999
Q ss_pred eEEEecccCC
Q 048589 272 VRVRRFVPKR 281 (283)
Q Consensus 272 iWaRky~pk~ 281 (283)
+-+..+.|++
T Consensus 75 i~V~~a~~~~ 84 (115)
T 4f25_A 75 VFVGRFKSRK 84 (115)
T ss_dssp CEEEESSCCC
T ss_pred EEEEECCCcc
Confidence 9998888765
No 43
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.35 E-value=9.6e-07 Score=68.82 Aligned_cols=83 Identities=13% Similarity=0.213 Sum_probs=64.3
Q ss_pred CCCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec-CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589 191 ANDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN-CRDQSLYARVIVRSPAFITLILGENELMQFNI 267 (283)
Q Consensus 191 ~~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~-~~~qplfariVf~s~~~vd~vL~g~~~~kf~I 267 (283)
.....+.+++|| +|.| ++++||+++|.+ ||+ |+.|.+-. .+....||.|.|.+.+....++..-+. ..|
T Consensus 23 ~~~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~--i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g--~~~ 94 (109)
T 2err_A 23 TENKSQPKRLHV---SNIPFRFRDPDLRQMFGQ-FGK--ILDVEIIFNERGSKGFGFVTFENSADADRAREKLHG--TVV 94 (109)
T ss_dssp CSCTTCCCEEEE---ESCCTTCCHHHHHHHGGG-TCC--CSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTT--CEE
T ss_pred ccCCCCCCEEEE---ECCCCcCCHHHHHHHHHh-cCC--EEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCC--CEE
Confidence 345667899998 7888 999999999986 998 66666654 555789999999999987777652111 148
Q ss_pred cCceeEEEecccCC
Q 048589 268 HGKDVRVRRFVPKR 281 (283)
Q Consensus 268 ngk~iWaRky~pk~ 281 (283)
+|+.+-++...||.
T Consensus 95 ~g~~l~V~~a~~~~ 108 (109)
T 2err_A 95 EGRKIEVNNATARV 108 (109)
T ss_dssp TTEECEEEECCCSC
T ss_pred CCEEEEEEECCCCc
Confidence 99999998887764
No 44
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.35 E-value=2.5e-06 Score=63.56 Aligned_cols=82 Identities=20% Similarity=0.174 Sum_probs=64.3
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec-CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN-CRDQSLYARVIVRSPAFITLILGENELMQFNIHG 269 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~-~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing 269 (283)
.+.+.+++|| +|.| ++++||+++|.+ | . +++.-.+.+ .++...||.|.|.+++.....|. .+. ..|+|
T Consensus 6 ~~~~~~~l~v---~nLp~~~t~~~l~~~F~~-~-~-i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g--~~~~g 76 (91)
T 2dgw_A 6 SGTTCHTVKL---RGAPFNVTEKNVMEFLAP-L-K-PVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNR--EYMGG 76 (91)
T ss_dssp CCCCCCEEEE---ECCCSSCCHHHHHHHHTT-S-C-CSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCS--EEETT
T ss_pred CCCCccEEEE---ECCCCCCCHHHHHHHHhh-C-C-ceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCC--ceeCC
Confidence 4567789988 7888 999999999997 6 6 343333333 67788999999999999888887 442 46899
Q ss_pred ceeEEEecccCCCC
Q 048589 270 KDVRVRRFVPKRAS 283 (283)
Q Consensus 270 k~iWaRky~pk~~~ 283 (283)
+.+-++...|++.|
T Consensus 77 r~i~v~~a~~~~~s 90 (91)
T 2dgw_A 77 RYIEVFREKSGPSS 90 (91)
T ss_dssp EEEEEEEESSCCCC
T ss_pred cEEEEEECCcCCCC
Confidence 99999988887654
No 45
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.33 E-value=1.1e-06 Score=70.93 Aligned_cols=75 Identities=21% Similarity=0.408 Sum_probs=62.0
Q ss_pred CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589 195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHG 269 (283)
Q Consensus 195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing 269 (283)
++.|++|| +|.| ++++||+++|.+ ||+ |+.|.+-. ++++.+||.|.|.+++.....+.... .++|
T Consensus 1 k~~~~l~v---~nLp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~----~~~g 70 (167)
T 2cjk_A 1 KESCKMFI---GGLNWDTTEDNLREYFGK-YGT--VTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQH----ILDG 70 (167)
T ss_dssp CGGGEEEE---CSCCTTCCHHHHHHHHTT-TCC--EEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCC----EETT
T ss_pred CCCcEEEE---eCCCCCCCHHHHHHHHHh-CCC--EEEEEEEECCCCCCccceEEEEEccHHHHHHHHhccc----ccCC
Confidence 35789998 8998 999999999996 998 66666543 68889999999999999998888533 7899
Q ss_pred ceeEEEeccc
Q 048589 270 KDVRVRRFVP 279 (283)
Q Consensus 270 k~iWaRky~p 279 (283)
+.+.++...|
T Consensus 71 ~~i~v~~~~~ 80 (167)
T 2cjk_A 71 KVIDPKRAIP 80 (167)
T ss_dssp EECCCEECCC
T ss_pred eEcccccccc
Confidence 9987766554
No 46
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.33 E-value=5.1e-07 Score=64.91 Aligned_cols=70 Identities=19% Similarity=0.324 Sum_probs=57.6
Q ss_pred ceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCcee
Q 048589 198 RTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDV 272 (283)
Q Consensus 198 RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~i 272 (283)
+|+|| +|.| ++++|++++|.+ ||+ |+.+.+.. +++...||.|.|.+++.....+...+ ..++|+.+
T Consensus 1 ~~l~v---~nlp~~~t~~~l~~~F~~-~G~--v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~---~~~~g~~l 71 (77)
T 1uaw_A 1 CKMFI---GGLSWQTTQEGLREYFGQ-FGE--VKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR---HELDSKTI 71 (77)
T ss_dssp CCEEE---ESCCSSCCSHHHHHHHTT-TSC--CCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT---CCCSSCCC
T ss_pred CEEEE---eCCCCCCCHHHHHHHHHh-cCC--EEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC---CccCCEEE
Confidence 46776 7888 999999999986 998 56666654 57888999999999999999998655 57899988
Q ss_pred EEEe
Q 048589 273 RVRR 276 (283)
Q Consensus 273 WaRk 276 (283)
-++.
T Consensus 72 ~v~~ 75 (77)
T 1uaw_A 72 DPKV 75 (77)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7664
No 47
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.32 E-value=7.3e-07 Score=72.13 Aligned_cols=83 Identities=22% Similarity=0.292 Sum_probs=66.2
Q ss_pred CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEE
Q 048589 192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFN 266 (283)
Q Consensus 192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~ 266 (283)
..+++.+++|| +|.| ++++||+++|.+ ||+ |+.|.+-. +++...||.|.|.+++....++..-+. ..
T Consensus 41 ~~~~~~~~l~V---~nLp~~~te~~L~~~F~~-~G~--I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng--~~ 112 (129)
T 2kxn_B 41 ANPDPNCCLGV---FGLSLYTTERDLREVFSK-YGP--IADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG--ME 112 (129)
T ss_dssp SCCCCSSCBCE---ETCTTSCCHHHHHHHHTT-TSC--EEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTT--CC
T ss_pred CCCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC--CE
Confidence 34667899988 7888 999999999986 998 66666653 578889999999999998777652111 25
Q ss_pred EcCceeEEEecccCCC
Q 048589 267 IHGKDVRVRRFVPKRA 282 (283)
Q Consensus 267 Ingk~iWaRky~pk~~ 282 (283)
|+|+.+-++...||++
T Consensus 113 i~g~~l~V~~a~~~~p 128 (129)
T 2kxn_B 113 LDGRRIRVDFSITKRP 128 (129)
T ss_dssp SSSSCCEESCCSSSSC
T ss_pred ECCEEEEEEEecCCCC
Confidence 7999999999888876
No 48
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.32 E-value=2.7e-06 Score=62.18 Aligned_cols=71 Identities=23% Similarity=0.388 Sum_probs=57.8
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHh---CCCCeeeE
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLIL---GENELMQF 265 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL---~g~~~~kf 265 (283)
+.+.|++|| +|.| ++++||+++|.+ ||+ |+.+.+-. .++...||.|.|.+.+.....+ +|.
T Consensus 4 ~~~~~~l~V---~nl~~~~~~~~l~~~f~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~----- 72 (85)
T 3mdf_A 4 ATTKRVLYV---GGLAEEVDDKVLHAAFIP-FGD--ITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES----- 72 (85)
T ss_dssp CCCSSEEEE---ECCCTTCCHHHHHHHHGG-GSC--EEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC-----
T ss_pred CCCCCEEEE---ECCCCCCCHHHHHHHHhc-cCC--EEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCC-----
Confidence 567799988 7888 999999999986 998 77777643 6778999999999999977776 453
Q ss_pred EEcCceeEEE
Q 048589 266 NIHGKDVRVR 275 (283)
Q Consensus 266 ~Ingk~iWaR 275 (283)
.++|+.+-++
T Consensus 73 ~~~g~~l~v~ 82 (85)
T 3mdf_A 73 ELFGRTIRVN 82 (85)
T ss_dssp EETTEECEEE
T ss_pred EECCcEEEEE
Confidence 4789988665
No 49
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.32 E-value=2.4e-06 Score=66.64 Aligned_cols=78 Identities=15% Similarity=0.240 Sum_probs=63.5
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHh---CCCCeee
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLIL---GENELMQ 264 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL---~g~~~~k 264 (283)
.+++.+++|| +|.| ++++||+++|.+ ||+ |+.|.+-. +++...||.|.|.+.+....++ +|.
T Consensus 22 ~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~--i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~---- 91 (108)
T 2jrs_A 22 GSAGPMRLYV---GSLHFNITEDMLRGIFEP-FGR--IESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF---- 91 (108)
T ss_dssp SCSSCEEEEE---ECCCSSCCHHHHHHHHTT-TSC--EEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTC----
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCC----
Confidence 4567789988 6887 999999999976 998 66666653 5777899999999999988776 453
Q ss_pred EEEcCceeEEEecccCC
Q 048589 265 FNIHGKDVRVRRFVPKR 281 (283)
Q Consensus 265 f~Ingk~iWaRky~pk~ 281 (283)
.|+|+.+-++...||.
T Consensus 92 -~i~g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 92 -ELAGRPMKVGHVTERT 107 (108)
T ss_dssp -CSSSSCCEEECSCSSC
T ss_pred -EECCEEEEEEEcccCC
Confidence 5899999998887774
No 50
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.31 E-value=3.3e-06 Score=64.57 Aligned_cols=80 Identities=14% Similarity=0.148 Sum_probs=63.9
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---C-CCCCceEEEEecChHHHHHHhCCCCeeeEE
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---C-RDQSLYARVIVRSPAFITLILGENELMQFN 266 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~-~~qplfariVf~s~~~vd~vL~g~~~~kf~ 266 (283)
..+..+|+|| +|.| ++++||+++|.. || |+.|.|.. + ++...||.|.|.+++....+| ..+. ..
T Consensus 11 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G---i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g--~~ 80 (104)
T 1wi8_A 11 PKSPPYTAFL---GNLPYDVTEESIKEFFRG-LN---ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNE--ES 80 (104)
T ss_dssp CSSSCEEEEE---ESCCSSCCHHHHHHHTTT-SC---EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGT--CE
T ss_pred CCCCCCEEEE---eCCCCcCCHHHHHHHHHH-CC---ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCC--CE
Confidence 3456689988 6877 999999999996 87 77777754 2 777899999999999988887 3222 25
Q ss_pred EcCceeEEEecccCCC
Q 048589 267 IHGKDVRVRRFVPKRA 282 (283)
Q Consensus 267 Ingk~iWaRky~pk~~ 282 (283)
|+|+.+.++...|++.
T Consensus 81 ~~g~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 81 LGNKRIRVDVADQAQD 96 (104)
T ss_dssp ETTEECEEEECCCCCC
T ss_pred eCCcEEEEEEccCCCC
Confidence 8999999998888764
No 51
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.31 E-value=3.8e-06 Score=63.32 Aligned_cols=77 Identities=13% Similarity=0.157 Sum_probs=61.3
Q ss_pred CceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCce
Q 048589 197 DRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKD 271 (283)
Q Consensus 197 ~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~ 271 (283)
.|++|| +|.| ++++||+++|.+ ||+ |++|.+-. +++...||.|.|.+.+....++..-+. ..|+|+.
T Consensus 2 ~~~l~V---~nLp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~g~~ 73 (96)
T 2x1f_A 2 SRVVYL---GSIPYDQTEEQILDLCSN-VGP--VINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNG--YQLGSRF 73 (96)
T ss_dssp CSEEEE---ESCCTTCCHHHHHHHHHT-TSC--EEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTT--CEETTEE
T ss_pred CcEEEE---ECCCCCCCHHHHHHHHHh-cCC--EEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCC--CeECCeE
Confidence 478988 6888 999999999996 998 77777754 578899999999999998776642111 2689999
Q ss_pred eEEEecccCC
Q 048589 272 VRVRRFVPKR 281 (283)
Q Consensus 272 iWaRky~pk~ 281 (283)
+-++...|++
T Consensus 74 l~V~~a~~~~ 83 (96)
T 2x1f_A 74 LKCGYSSNSD 83 (96)
T ss_dssp CEEEECSCSS
T ss_pred EEEEEcCCCC
Confidence 9888877765
No 52
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.31 E-value=2.6e-06 Score=63.52 Aligned_cols=77 Identities=21% Similarity=0.287 Sum_probs=60.1
Q ss_pred CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEE
Q 048589 192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFN 266 (283)
Q Consensus 192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~ 266 (283)
..++..+++|| +|.| ++++||+++|.+ ||+ |+.|.+.. +++...||.|.|.+++....++..-+. ..
T Consensus 10 ~~~~~~~~l~v---~nlp~~~t~~~l~~~f~~-~G~--v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~ 81 (95)
T 2cqc_A 10 ANPDPNCCLGV---FGLSLYTTERDLREVFSK-YGP--IADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG--ME 81 (95)
T ss_dssp CSCCGGGCEEE---ESCCSSCCHHHHHHHHHT-TSC--EEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTT--EE
T ss_pred CCCCCCCEEEE---ECCCCCCCHHHHHHHHHh-cCC--eeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCC--CE
Confidence 34667899999 6888 999999999987 998 66776653 567788999999999998877653221 46
Q ss_pred EcCceeEEEe
Q 048589 267 IHGKDVRVRR 276 (283)
Q Consensus 267 Ingk~iWaRk 276 (283)
|+|+.+-++.
T Consensus 82 ~~g~~l~v~~ 91 (95)
T 2cqc_A 82 LDGRRIRVSG 91 (95)
T ss_dssp ETTEEEEEEC
T ss_pred ECCEEEEEEe
Confidence 7899887654
No 53
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=2.2e-06 Score=64.54 Aligned_cols=76 Identities=26% Similarity=0.416 Sum_probs=59.3
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec-CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN-CRDQSLYARVIVRSPAFITLILGENELMQFNIHGK 270 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~-~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk 270 (283)
+...|++|| +|.| ++++||+++|.+ ||+ |+.|.+.. .++ ||+|.|.+++..+.++. .+ ...|+|+
T Consensus 5 ~~~~~~l~V---~nl~~~~t~~~l~~~F~~-~G~--v~~v~~~~~~g~---~afV~f~~~~~a~~ai~-l~--g~~~~g~ 72 (94)
T 2e5g_A 5 SSGLRSVFV---SGFPRGVDSAQLSEYFLA-FGP--VASVVMDKDKGV---FAIVEMGDVGAREAVLS-QS--QHSLGGH 72 (94)
T ss_dssp CTTCCEEEE---ECCCTTCCHHHHHHHGGG-TSC--EEEEEECSSSCC---EEEEEESSHHHHHHHHT-CS--CCEETTE
T ss_pred cCCCCEEEE---ECCCCCCCHHHHHHHHHh-cCC--eEEEEEcCCCCc---EEEEEECCHHHHHHHHh-cC--CeEECCE
Confidence 445689988 7888 999999999996 998 66774443 333 99999999999888887 33 2468999
Q ss_pred eeEEEecccCC
Q 048589 271 DVRVRRFVPKR 281 (283)
Q Consensus 271 ~iWaRky~pk~ 281 (283)
.+-++...++.
T Consensus 73 ~l~V~~a~~~~ 83 (94)
T 2e5g_A 73 RLRVRPREQKE 83 (94)
T ss_dssp ECCCBCSCCSC
T ss_pred EEEEEECCcCC
Confidence 99888766554
No 54
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.30 E-value=2.1e-06 Score=66.64 Aligned_cols=77 Identities=21% Similarity=0.384 Sum_probs=62.4
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhC---CCCeeeEEE
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILG---ENELMQFNI 267 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~---g~~~~kf~I 267 (283)
+|+..+|+|| +|.| ++++||+++|.+ ||. |++|.|-..++...||.|.|.+.+.....+. |. .+
T Consensus 4 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-----~~ 72 (115)
T 3lqv_A 4 PPEVNRILYI---RNLPYKITAEEMYDIFGK-YGP--IRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGF-----NV 72 (115)
T ss_dssp CTTCCSEEEE---ESCCTTCCHHHHHHHHHT-TSC--EEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTC-----BS
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCC-----EE
Confidence 4667799998 7888 899999999996 998 7778776656668999999999988777654 54 47
Q ss_pred cCceeEEEecccC
Q 048589 268 HGKDVRVRRFVPK 280 (283)
Q Consensus 268 ngk~iWaRky~pk 280 (283)
+|+.+-+..+.|+
T Consensus 73 ~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 73 SNRYLVVLYYNAN 85 (115)
T ss_dssp SSCBCEEEECCHH
T ss_pred CCeEEEEEEecCC
Confidence 8999988877664
No 55
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.30 E-value=2.4e-06 Score=64.51 Aligned_cols=82 Identities=13% Similarity=0.060 Sum_probs=61.5
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNI 267 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~I 267 (283)
.+...+|+|| +|.| ++++||+++|.+ ||+ .+..|.+.. +++...||.|.|.+++....++..-+. ..+
T Consensus 5 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~-i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~ 77 (99)
T 2div_A 5 SSGMAASLWM---GDLEPYMDENFISRAFAT-MGE-TVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKING--KPL 77 (99)
T ss_dssp CCSSSSEEEE---CSCCTTCCHHHHHHHHHH-TTC-CCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTT--SEE
T ss_pred CCCCccEEEE---eCCCCCCCHHHHHHHHHH-hCC-cceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcC--Ccc
Confidence 4566799998 8888 999999999997 998 441665543 678889999999999998877763222 257
Q ss_pred cCce----eEEEecccCC
Q 048589 268 HGKD----VRVRRFVPKR 281 (283)
Q Consensus 268 ngk~----iWaRky~pk~ 281 (283)
+|+. +-+....|..
T Consensus 78 ~g~~~~~~l~v~~a~~~~ 95 (99)
T 2div_A 78 PGATPAKRFKLNYATYSG 95 (99)
T ss_dssp SSCSSCEECCEEETTCCS
T ss_pred CCCCcceeEEEeecCCCC
Confidence 8988 6665555443
No 56
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.30 E-value=2.6e-06 Score=64.66 Aligned_cols=81 Identities=17% Similarity=0.126 Sum_probs=63.3
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGK 270 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk 270 (283)
.+.+.+++|| +|.| ++++||+++|.+ ||+ + .+.....++...||.|.|.+++....++...+. ..|+|+
T Consensus 11 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~g~-v--~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~ 81 (101)
T 2fc9_A 11 WSGESKTLVL---SNLSYSATEETLQEVFEK-ATF-I--KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNK--REIEGR 81 (101)
T ss_dssp CSCCCSEEEE---ESCCTTCCHHHHHHHCSS-CSE-E--ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSS--EEETTE
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-CCE-E--EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCC--CEeCCe
Confidence 4567899999 6888 999999999997 998 4 332223678889999999999998887763222 468899
Q ss_pred eeEEEecccCCC
Q 048589 271 DVRVRRFVPKRA 282 (283)
Q Consensus 271 ~iWaRky~pk~~ 282 (283)
.+-++...|+++
T Consensus 82 ~l~v~~a~~~~~ 93 (101)
T 2fc9_A 82 AIRLELQGPRGS 93 (101)
T ss_dssp EEEEEECSSCCC
T ss_pred EEEEEEcCCCCC
Confidence 999988877654
No 57
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.29 E-value=2.3e-06 Score=67.62 Aligned_cols=80 Identities=19% Similarity=0.236 Sum_probs=62.2
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIHG 269 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing 269 (283)
+++.+|+|| +|.| ++++||+++|.+ ||. |+.|.+-. .++...||.|.|.+.+..+.++..-+. ..|+|
T Consensus 4 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g--~~~~g 75 (116)
T 2fy1_A 4 ADHPGKLFI---GGLNRETNEKMLKAVFGK-HGP--ISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNG--KSLHG 75 (116)
T ss_dssp TCSCCEEEE---ECCTTTCCHHHHHHHHHT-SSC--CSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSS--CBCSS
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--EEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCC--CEECC
Confidence 456789998 7888 999999999996 998 66666654 677889999999999998777642111 14799
Q ss_pred ceeEEEecccCC
Q 048589 270 KDVRVRRFVPKR 281 (283)
Q Consensus 270 k~iWaRky~pk~ 281 (283)
+.+-++...|+.
T Consensus 76 ~~l~V~~a~~~~ 87 (116)
T 2fy1_A 76 KAIKVEQAKKPS 87 (116)
T ss_dssp SBCEEEECCCSS
T ss_pred EEEEEEECCCCC
Confidence 999887766554
No 58
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.28 E-value=3.5e-06 Score=65.01 Aligned_cols=75 Identities=21% Similarity=0.212 Sum_probs=59.2
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHh---CCCCeeeE
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLIL---GENELMQF 265 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL---~g~~~~kf 265 (283)
.-+..+||| ++.| +|++||+++|.+ ||+ |++|.+-. +++..+||+|.|.+++.....+ +|.
T Consensus 16 ~~~gt~lfV---~nLp~~~te~~L~~~F~~-~G~--I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~----- 84 (99)
T 4fxv_A 16 YFQGTNLIV---NYLPQNMTQDELRSLFSS-IGE--VESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGL----- 84 (99)
T ss_dssp CCCCSEEEE---ESCCTTCCHHHHHHHHHT-TSC--EEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTC-----
T ss_pred cCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--EEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCC-----
Confidence 334568888 8888 999999999986 998 66666543 6788899999999998877665 453
Q ss_pred EEcCceeEEEeccc
Q 048589 266 NIHGKDVRVRRFVP 279 (283)
Q Consensus 266 ~Ingk~iWaRky~p 279 (283)
.|+|+.+-++...|
T Consensus 85 ~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 85 RLQSKTIKVSYARP 98 (99)
T ss_dssp EETTEECEEEECCB
T ss_pred EECCEEEEEEEeeC
Confidence 58999998876655
No 59
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.27 E-value=4.2e-06 Score=68.20 Aligned_cols=82 Identities=17% Similarity=0.209 Sum_probs=64.6
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNI 267 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~I 267 (283)
.....+++|| +|.| ++++||+++|.+ ||+ |+.|.+.. +++..+||.|.|.+.+.....+..-+. ..|
T Consensus 66 ~~~~~~~l~v---~nl~~~~~~~~l~~~F~~-~G~--v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~ 137 (158)
T 2kn4_A 66 DVEGMTSLKV---DNLTYRTSPDTLRRVFEK-YGR--VGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG--AVL 137 (158)
T ss_dssp CCCBCCEEEE---ESCCTTCCHHHHHHHHHH-HSC--EEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTT--EES
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC--CEE
Confidence 3456789988 6888 999999999975 998 66776654 688899999999999998887753221 258
Q ss_pred cCceeEEEecccCCC
Q 048589 268 HGKDVRVRRFVPKRA 282 (283)
Q Consensus 268 ngk~iWaRky~pk~~ 282 (283)
+|+.+-++...|+++
T Consensus 138 ~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 138 DGRELRVQMARYGRP 152 (158)
T ss_dssp SSSEEEEEEECCSSC
T ss_pred CCeEEEEEECCCCCC
Confidence 999998888776654
No 60
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=4.5e-06 Score=62.21 Aligned_cols=76 Identities=16% Similarity=0.288 Sum_probs=59.6
Q ss_pred CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEE
Q 048589 192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFN 266 (283)
Q Consensus 192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~ 266 (283)
..+++.+++|| +|.| ++++||+++|.+ ||+ |+.|.+.. +++...||.|.|.+.+....++...+. ..
T Consensus 11 ~~~~~~~~l~V---~nlp~~~t~~~l~~~f~~-~G~--v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~ 82 (94)
T 2e5h_A 11 GLAPSKSTVYV---SNLPFSLTNNDLYRIFSK-YGK--VVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINN--KQ 82 (94)
T ss_dssp SCCCCTTSEEE---ESCCTTSCHHHHHHHTTT-TSC--EEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTT--EE
T ss_pred CCCCCCCEEEE---ECCCCCCCHHHHHHHHHh-cCC--eEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCC--Ce
Confidence 34667899999 6888 999999999986 998 77777754 577889999999999998877752221 36
Q ss_pred EcCceeEEE
Q 048589 267 IHGKDVRVR 275 (283)
Q Consensus 267 Ingk~iWaR 275 (283)
|+|+.+-++
T Consensus 83 ~~g~~l~v~ 91 (94)
T 2e5h_A 83 LFGRVIKAS 91 (94)
T ss_dssp ETTEEEEEE
T ss_pred eCCcEEEEE
Confidence 789888654
No 61
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.27 E-value=2.2e-06 Score=62.36 Aligned_cols=76 Identities=12% Similarity=0.100 Sum_probs=58.7
Q ss_pred eEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCceeE
Q 048589 199 TLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N--CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVR 273 (283)
Q Consensus 199 T~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~iW 273 (283)
|+|| +|.| ++++||+++|.+ ||+ |+.+.+- + +++...||.|.|.+.+....++..-+.. .++|+.+-
T Consensus 3 ~l~V---~nlp~~~t~~~l~~~f~~-~G~--i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~--~~~g~~l~ 74 (83)
T 3md1_A 3 NLFV---GDLNVNVDDETLRNAFKD-FPS--YLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ--DLNGRPLR 74 (83)
T ss_dssp EEEE---ECCCTTCCHHHHHHHHTT-STT--EEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTC--EETTEECE
T ss_pred EEEE---eCCCCCCCHHHHHHHHHh-cCC--eeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCC--eeCCcEEE
Confidence 5555 7888 999999999986 998 5566554 3 6778899999999999988776521111 47999999
Q ss_pred EEecccCCC
Q 048589 274 VRRFVPKRA 282 (283)
Q Consensus 274 aRky~pk~~ 282 (283)
++...||+.
T Consensus 75 v~~a~~~~~ 83 (83)
T 3md1_A 75 INWAAKLEH 83 (83)
T ss_dssp EEECCCCCC
T ss_pred EEecCcCCC
Confidence 998888753
No 62
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.27 E-value=2e-06 Score=70.99 Aligned_cols=80 Identities=18% Similarity=0.301 Sum_probs=63.8
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c--CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N--CRDQSLYARVIVRSPAFITLILGENELMQFNI 267 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~I 267 (283)
.+++.|++|| +|.| ++++||+++|.+ ||+ |+.|.+- + ++...+||.|.|.+++.....|.... ..+
T Consensus 9 ~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~--i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~---~~~ 79 (196)
T 1l3k_A 9 EPEQLRKLFI---GGLSFETTDESLRSHFEQ-WGT--LTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARP---HKV 79 (196)
T ss_dssp CCGGGGEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCS---CEE
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-CCC--EEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCC---CEE
Confidence 4667899999 7888 999999999996 998 5555543 3 57778999999999999999987632 468
Q ss_pred cCceeEEEecccCC
Q 048589 268 HGKDVRVRRFVPKR 281 (283)
Q Consensus 268 ngk~iWaRky~pk~ 281 (283)
+|+.+.++...++.
T Consensus 80 ~g~~l~v~~~~~~~ 93 (196)
T 1l3k_A 80 DGRVVEPKRAVSRE 93 (196)
T ss_dssp TTEECEEEECCC--
T ss_pred CCEEeeeecccCcc
Confidence 99999888776553
No 63
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.26 E-value=3.2e-06 Score=63.02 Aligned_cols=77 Identities=19% Similarity=0.288 Sum_probs=61.7
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGK 270 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk 270 (283)
.+++.+|+|| +|.| ++++||+++|.+ ||+ |+.|.|. ..||.|.|.+.+....++...+. ..++|+
T Consensus 4 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g--~~~~g~ 70 (90)
T 2dnq_A 4 GSSGMVKLFI---GNLPREATEQEIRSLFEQ-YGK--VLECDII-----KNYGFVHIEDKTAAEDAIRNLHH--YKLHGV 70 (90)
T ss_dssp CSSCCEEEEE---ESCCSSCCHHHHHHHHHT-SSC--EEEEEEE-----TTEEEEEESSHHHHHHHHHHHTT--CBCSSC
T ss_pred CCCCCeEEEE---eCCCCCCCHHHHHHHHHh-CCC--EEEEEEE-----CCEEEEEECCHHHHHHHHHHhcC--CccCCc
Confidence 4667899998 6888 999999999996 998 7888885 46999999999997776642111 248999
Q ss_pred eeEEEecccCCC
Q 048589 271 DVRVRRFVPKRA 282 (283)
Q Consensus 271 ~iWaRky~pk~~ 282 (283)
.+-++...|++.
T Consensus 71 ~l~v~~a~~~~~ 82 (90)
T 2dnq_A 71 NINVEASKNKSK 82 (90)
T ss_dssp BCEEECSSCCCC
T ss_pred EEEEEECCCCCC
Confidence 999988887764
No 64
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.26 E-value=5.4e-06 Score=63.25 Aligned_cols=83 Identities=11% Similarity=0.114 Sum_probs=62.8
Q ss_pred CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhC---CCCee
Q 048589 192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILG---ENELM 263 (283)
Q Consensus 192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~---g~~~~ 263 (283)
..+.+.+++|| +|.| ++++||+++|.+ ||+ |+.|.|-. +++...||+|.|.+.+....++. |...
T Consensus 8 ~~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~- 80 (106)
T 2dgp_A 8 MKDHDAIKLFI---GQIPRNLDEKDLKPLFEE-FGK--IYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT- 80 (106)
T ss_dssp CCCTTCEEEEE---ESCCTTCCHHHHHHHHHH-HSC--CCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCC-
T ss_pred CCCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcc-
Confidence 34667799988 6888 999999999997 998 66666654 57788999999999988776654 5431
Q ss_pred eEEEcCceeEEEecccCCC
Q 048589 264 QFNIHGKDVRVRRFVPKRA 282 (283)
Q Consensus 264 kf~Ingk~iWaRky~pk~~ 282 (283)
+..+|+.+-++...|++.
T Consensus 81 -~~~~g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 81 -LPGMNRPIQVKPADSESR 98 (106)
T ss_dssp -CTTCSSCCEEEECCCCSC
T ss_pred -cCCCCceEEEEECCcccc
Confidence 111778888887776653
No 65
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.25 E-value=8.1e-06 Score=62.15 Aligned_cols=77 Identities=13% Similarity=0.139 Sum_probs=60.7
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHh---CCCCeeeEE
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLIL---GENELMQFN 266 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL---~g~~~~kf~ 266 (283)
+++.+++|| +|.| ++++||+++|.+ ||. |+.|.|.. .++...||.|.|.+.+....++ +|..
T Consensus 12 ~~~~~~l~v---~nLp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~----- 80 (105)
T 2dnh_A 12 GGRDRKLFV---GMLNKQQSEEDVLRLFQP-FGV--IDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQ----- 80 (105)
T ss_dssp CCCCCEEEE---ESCCTTCCHHHHHHHHTT-TSC--EEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCC-----
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCc-----
Confidence 456799998 6887 999999999996 998 67777654 5666889999999999877765 4543
Q ss_pred EcC---ceeEEEecccCC
Q 048589 267 IHG---KDVRVRRFVPKR 281 (283)
Q Consensus 267 Ing---k~iWaRky~pk~ 281 (283)
++| +.+-++...|++
T Consensus 81 ~~gg~~~~l~V~~a~~~~ 98 (105)
T 2dnh_A 81 TMPGASSSLVVKFADTDK 98 (105)
T ss_dssp CCTTCSSCCEEEESCSSC
T ss_pred cCCCCCccEEEEECccCc
Confidence 566 888777776654
No 66
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.25 E-value=4.2e-06 Score=65.72 Aligned_cols=78 Identities=13% Similarity=0.151 Sum_probs=61.0
Q ss_pred CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589 195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHG 269 (283)
Q Consensus 195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing 269 (283)
.+.||+|| +|.| ++++||+++|.+ ||+ |+.|.|.. .++...||.|.|.+.+.....+. .+. ..|+|
T Consensus 34 ~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g--~~~~g 104 (124)
T 2jwn_A 34 IDKRSVYV---GNVDYGSTAQDLEAHFSS-CGS--INRITILCDKFSGHPKGYAYIEFAERNSVDAAVA-MDE--TVFRG 104 (124)
T ss_dssp HHHTEEEE---EEECTTCCHHHHHHHHHT-TSC--EEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHT-TTT--CEETT
T ss_pred CCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--EEEEEEEecCCCCCcccEEEEEECCHHHHHHHHh-cCC--CeECC
Confidence 45789998 6777 999999999996 998 66666643 68889999999999999888883 222 25899
Q ss_pred ceeEEEecccCC
Q 048589 270 KDVRVRRFVPKR 281 (283)
Q Consensus 270 k~iWaRky~pk~ 281 (283)
+.+-++...+.+
T Consensus 105 ~~l~V~~a~~~~ 116 (124)
T 2jwn_A 105 RTIKVLPKRTNM 116 (124)
T ss_dssp EECEEEESSCCC
T ss_pred eEEEEEECCCCC
Confidence 999777655544
No 67
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.25 E-value=9e-06 Score=60.52 Aligned_cols=77 Identities=19% Similarity=0.203 Sum_probs=60.8
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGK 270 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk 270 (283)
.+.+.+++|| +|.| ++++||+++|.+ ||+ |+.+.|-+ .||.|.|.+.+..+..+...+. ..++|+
T Consensus 5 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--v~~~~~~~-----~~afV~f~~~~~a~~A~~~l~g--~~~~g~ 71 (90)
T 2dnp_A 5 SSGNTWKIFV---GNVSAACTSQELRSLFER-RGR--VIECDVVK-----DYAFVHMEKEADAKAAIAQLNG--KEVKGK 71 (90)
T ss_dssp SSCCSCCEEE---ESCCTTCCHHHHHHHHHH-HSC--EEEEEECS-----SCEEEEESCHHHHHHHHHHHTT--CEETTE
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHc-CCC--EEEEEEEC-----CEEEEEECCHHHHHHHHHHhCC--CEECCc
Confidence 4567899998 7887 999999999997 998 78888853 2999999999988777652111 258999
Q ss_pred eeEEEecccCCC
Q 048589 271 DVRVRRFVPKRA 282 (283)
Q Consensus 271 ~iWaRky~pk~~ 282 (283)
.+-++...|+++
T Consensus 72 ~l~v~~a~~~~~ 83 (90)
T 2dnp_A 72 RINVELSTKGQK 83 (90)
T ss_dssp ECEEEESCCCCC
T ss_pred EEEEEECCCCCC
Confidence 998888877653
No 68
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.25 E-value=2.4e-06 Score=61.14 Aligned_cols=65 Identities=15% Similarity=0.300 Sum_probs=53.5
Q ss_pred CCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCceeEEEe
Q 048589 206 KGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRVRR 276 (283)
Q Consensus 206 ~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~iWaRk 276 (283)
+|.| ++++||+++|.+ ||+ |+.+.|-. +++...||.|.|.+++....++.... ..|+|+.+-++.
T Consensus 5 ~nLp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~---~~~~g~~l~v~~ 74 (75)
T 1iqt_A 5 GGLSPDTPEEKIREYFGG-FGE--VESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY---HNVGLSKCEIKV 74 (75)
T ss_dssp SCCCSSCCHHHHHHHHHH-HSC--CSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSS---CCBTTBCCCEEE
T ss_pred eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCC---CeECCEEEEEEE
Confidence 7888 999999999997 998 67777754 57888999999999999999988422 358999886654
No 69
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.24 E-value=2.2e-06 Score=69.70 Aligned_cols=82 Identities=17% Similarity=0.215 Sum_probs=64.8
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNI 267 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~I 267 (283)
.+++.+|+|| +|.| ++++||+++|.+ ||+ |+.|.+-. +++...||.|.|.+.+....++..-+.. .|
T Consensus 43 ~~~~~~~l~V---~nLp~~~te~~L~~~F~~-~G~--i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~--~i 114 (135)
T 2lea_A 43 DVEGMTSLKV---DNLTYRTSPDTLRRVFEK-YGR--VGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA--VL 114 (135)
T ss_dssp SGGGCCCEEE---ECCCSSCHHHHHHHHHGG-GSC--CSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTC--CS
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--EEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC--EE
Confidence 3556789998 6888 999999999986 998 66666643 6788899999999999988888643222 38
Q ss_pred cCceeEEEecccCCC
Q 048589 268 HGKDVRVRRFVPKRA 282 (283)
Q Consensus 268 ngk~iWaRky~pk~~ 282 (283)
+|+.+-++...|+++
T Consensus 115 ~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 115 DGRELRVQMARYGRP 129 (135)
T ss_dssp SSSCCEEEECCCCCC
T ss_pred CCEEEEEEECCCCCC
Confidence 999998887776654
No 70
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.24 E-value=5.2e-06 Score=63.98 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=62.8
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIH 268 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~In 268 (283)
.+++.+++|| +|.| ++++||++||.+ ||. ..+.|.|-. .++...||+|.|.+++.....|.. + .-.|+
T Consensus 11 ~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~-v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~--~~~~~ 82 (104)
T 1wg5_A 11 DTANDGFVRL---RGLPFGCSKEEIVQFFSG-LEI-VPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-H--KERIG 82 (104)
T ss_dssp SCSCCCEEEE---ESCCTTCCHHHHHHHTTT-CCE-EEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-T--TCCSS
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-cceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-C--cchhC
Confidence 3556788887 8888 999999999996 998 544476543 788899999999999999998875 2 23589
Q ss_pred CceeEEEecccC
Q 048589 269 GKDVRVRRFVPK 280 (283)
Q Consensus 269 gk~iWaRky~pk 280 (283)
|+.+-+.+-.++
T Consensus 83 gr~i~v~~~~~~ 94 (104)
T 1wg5_A 83 HRYIEIFKSSRA 94 (104)
T ss_dssp SSCCEEEEECTT
T ss_pred CcEEEEEECCHH
Confidence 998877665544
No 71
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.24 E-value=5.1e-06 Score=63.37 Aligned_cols=81 Identities=9% Similarity=0.129 Sum_probs=63.6
Q ss_pred CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEE
Q 048589 192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFN 266 (283)
Q Consensus 192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~ 266 (283)
..++..+++|| +|.| ++++||+++|.+ || |+.|.|-. +++...||.|.|.+++....+| ..+ ...
T Consensus 10 ~~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~g---i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~--g~~ 79 (103)
T 2dng_A 10 LPTEPPYTAYV---GNLPFNTVQGDIDAIFKD-LS---IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYD--GAL 79 (103)
T ss_dssp CCSSSCEEEEE---ESCCTTCCHHHHHHHTTT-SC---EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGT--TCE
T ss_pred CCCCCCeEEEE---eCCCCCCCHHHHHHHHHh-CC---ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhC--CCe
Confidence 44567799988 6888 999999999997 64 55665543 5778899999999999988888 322 246
Q ss_pred EcCceeEEEecccCCC
Q 048589 267 IHGKDVRVRRFVPKRA 282 (283)
Q Consensus 267 Ingk~iWaRky~pk~~ 282 (283)
|+|+.+-++...|++.
T Consensus 80 ~~g~~l~V~~a~~~~~ 95 (103)
T 2dng_A 80 LGDRSLRVDIAEGRKQ 95 (103)
T ss_dssp ETTEECEEEECCCCCC
T ss_pred ECCeEEEEEEecCCCC
Confidence 8999998888777654
No 72
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.24 E-value=1.1e-05 Score=63.91 Aligned_cols=76 Identities=20% Similarity=0.319 Sum_probs=61.4
Q ss_pred CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEE
Q 048589 192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFN 266 (283)
Q Consensus 192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~ 266 (283)
..+.+.+++|| +|.| ++++||+++|.+ ||+ |+.|.+.. .++...||.|.|.+++....++..-+. ..
T Consensus 58 ~~~~~~~~l~v---~nlp~~~~~~~l~~~f~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~ 129 (140)
T 2ku7_A 58 GSATTKRVLYV---GGLAEEVDDKVLHAAFIP-FGD--ITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE--SE 129 (140)
T ss_dssp SSCSSCCEEEE---ECCCTTCCHHHHHHHHGG-GSC--EEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTE--EE
T ss_pred CCCCCCcEEEE---EeCCCCCCHHHHHHHHHh-cCC--EEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCC--CE
Confidence 44567899998 7888 999999999986 999 77777754 578899999999999998888754332 36
Q ss_pred EcCceeEEE
Q 048589 267 IHGKDVRVR 275 (283)
Q Consensus 267 Ingk~iWaR 275 (283)
|+|+.+-++
T Consensus 130 ~~g~~l~v~ 138 (140)
T 2ku7_A 130 LFGRTIRVN 138 (140)
T ss_dssp ETTEEEEEE
T ss_pred ECCEEEEEE
Confidence 889988665
No 73
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.23 E-value=8e-06 Score=63.13 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=62.5
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceee-------EEEeec---CCCCCceEEEEecChHHHHHHhCCCC
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVE-------DIKMGN---CRDQSLYARVIVRSPAFITLILGENE 261 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve-------~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~ 261 (283)
..+.+|+|| +|.| ++++||+++|.+ ||. ... .|.+.. +++...||.|.|.+.+....++..-+
T Consensus 12 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~-i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 86 (113)
T 2cpe_A 12 DSDNSAIYV---QGLNDSVTLDDLADFFKQ-CGV-VKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFD 86 (113)
T ss_dssp CCCCCEEEE---ECCCTTCCHHHHHHHHTT-TSC-BCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCEEEE---cCCCCCCCHHHHHHHHHh-cCC-EeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcC
Confidence 456789998 7888 999999999997 998 441 344432 67888999999999999887765211
Q ss_pred eeeEEEcCceeEEEecccCCC
Q 048589 262 LMQFNIHGKDVRVRRFVPKRA 282 (283)
Q Consensus 262 ~~kf~Ingk~iWaRky~pk~~ 282 (283)
. ..|+|+.+-++...|+..
T Consensus 87 g--~~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 87 G--KDFQGSKLKVSLARKKPP 105 (113)
T ss_dssp T--CEETTEECEEECSSCCCC
T ss_pred C--CccCCCEEEEEECCCCCC
Confidence 1 158999999888877654
No 74
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.23 E-value=2.9e-06 Score=66.14 Aligned_cols=76 Identities=18% Similarity=0.227 Sum_probs=59.5
Q ss_pred CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEE
Q 048589 192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFN 266 (283)
Q Consensus 192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~ 266 (283)
..+++.+|+|| +|.| ++++||+++|.+ ||+ |+.|.|.. +++...||.|.|.+.+.....+..-+. ..
T Consensus 35 ~~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g--~~ 106 (118)
T 2khc_A 35 IEGPEGCNLFI---YHLPQEFTDTDLASTFLP-FGN--VISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNG--FQ 106 (118)
T ss_dssp CCCCCSEEEEE---ECSCTTCCHHHHHHHTTT-SCE--EEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCC--CE
T ss_pred CCCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--EEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCC--CE
Confidence 34567799988 7888 999999999996 998 67777653 578899999999999998877763221 25
Q ss_pred EcCceeEEE
Q 048589 267 IHGKDVRVR 275 (283)
Q Consensus 267 Ingk~iWaR 275 (283)
|+|+.+-++
T Consensus 107 ~~g~~l~V~ 115 (118)
T 2khc_A 107 VGTKRLKVQ 115 (118)
T ss_dssp ETTEECCEE
T ss_pred ECCEEEEEE
Confidence 889887554
No 75
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=7.9e-06 Score=61.77 Aligned_cols=79 Identities=11% Similarity=0.072 Sum_probs=62.5
Q ss_pred CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHh---CCCCeeeEE
Q 048589 192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLIL---GENELMQFN 266 (283)
Q Consensus 192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL---~g~~~~kf~ 266 (283)
..++..+++|| +|.| ++++||+++|.+ ||. +...+.. ++...||.|.|.+.+.....+ +|. .
T Consensus 14 ~~~~~~~~l~V---~nL~~~~t~~~l~~~F~~-~G~-v~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~-----~ 80 (97)
T 2e5j_A 14 EGAPLAADVYV---GNLPRDARVSDLKRALRE-LGS-VPLRLTW---QGPRRRAFLHYPDSAAAQQAVSCLQGL-----R 80 (97)
T ss_dssp SSSCCCCEEEE---ECCCTTCCHHHHHHHHHH-TTC-CCSEEEE---ETTTTEEEEECSSHHHHHHHHHHHTTC-----C
T ss_pred CCCCCCCEEEE---eCCCCcCcHHHHHHHHHh-cCC-EEEEEEc---CCCCcEEEEEECCHHHHHHHHHHhCCC-----E
Confidence 34566789998 7887 999999999996 998 5333333 567889999999999877665 454 4
Q ss_pred EcCceeEEEecccCCCC
Q 048589 267 IHGKDVRVRRFVPKRAS 283 (283)
Q Consensus 267 Ingk~iWaRky~pk~~~ 283 (283)
|+|+.+-++...|++++
T Consensus 81 ~~g~~l~V~~a~~~~~~ 97 (97)
T 2e5j_A 81 LGTDTLRVALARQQRDK 97 (97)
T ss_dssp SSSSCCEEEECCCCCCC
T ss_pred ECCcEEEEEEcCCCCCC
Confidence 89999999998888763
No 76
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.22 E-value=3e-06 Score=66.76 Aligned_cols=78 Identities=17% Similarity=0.279 Sum_probs=61.6
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c--CCCCCceEEEEecChHHHHHHh---CCCCeee
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N--CRDQSLYARVIVRSPAFITLIL---GENELMQ 264 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~--~~~qplfariVf~s~~~vd~vL---~g~~~~k 264 (283)
...+.+|+|| +|.| ++++||+++|.+ ||. |+.|.|- + ++....||.|.|.+.+....++ +|.
T Consensus 18 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---- 87 (126)
T 3ex7_B 18 RSVEGWILFV---TGVHEEATEEDIHDKFAE-YGE--IKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ---- 87 (126)
T ss_dssp CCSSSEEEEE---ESCCTTCCHHHHHHHHHT-TSC--EEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTC----
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC----
Confidence 3456789988 7887 999999999996 998 6677664 3 6777899999999999977766 453
Q ss_pred EEEcCceeEEEecccCC
Q 048589 265 FNIHGKDVRVRRFVPKR 281 (283)
Q Consensus 265 f~Ingk~iWaRky~pk~ 281 (283)
.|+|+.+-+....|+.
T Consensus 88 -~~~g~~l~v~~a~~~~ 103 (126)
T 3ex7_B 88 -DLMGQPISVDWCFVRG 103 (126)
T ss_dssp -BSSSSBCEEEESEESS
T ss_pred -eeCCeEEEEEEecCCC
Confidence 3799999887766654
No 77
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.22 E-value=2.7e-06 Score=63.57 Aligned_cols=76 Identities=16% Similarity=0.332 Sum_probs=58.6
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIH 268 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~In 268 (283)
.+++.+++|| +|.| ++++||+++|.+ ||+ |+.|.|.. .++...||.|.|.+++....++..-+. ..++
T Consensus 12 ~~~~~~~l~v---~nlp~~~~~~~l~~~F~~-~G~--i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~ 83 (95)
T 2ywk_A 12 QEEADRTVFV---GNLEARVREEILYELFLQ-AGP--LTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNG--IRLY 83 (95)
T ss_dssp CTTGGGEEEE---ECCCTTCCHHHHHHHHGG-GSC--EEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTT--CEET
T ss_pred CCCCCCEEEE---ECCCCCCCHHHHHHHHHh-cCC--EEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCC--CEEC
Confidence 4567799998 6888 999999999986 998 77777754 466678999999999998877652111 1478
Q ss_pred CceeEEEe
Q 048589 269 GKDVRVRR 276 (283)
Q Consensus 269 gk~iWaRk 276 (283)
|+.+-++.
T Consensus 84 g~~l~V~~ 91 (95)
T 2ywk_A 84 GRPINVSG 91 (95)
T ss_dssp TEECEEEC
T ss_pred CCEEEEEE
Confidence 98886653
No 78
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.22 E-value=1.2e-06 Score=65.51 Aligned_cols=80 Identities=18% Similarity=0.142 Sum_probs=61.9
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGK 270 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk 270 (283)
.+++.+++|| +|.| ++++||+++|.+ ||+ .|+.+.+. ...||.|.|.+.+..+..+...+- +..++|+
T Consensus 4 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~-vv~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g-~~~~~g~ 73 (93)
T 2cqh_A 4 GSSGMNKLYI---GNLSPAVTADDLRQLFGD-RKL-PLAGQVLL----KSGYAFVDYPDQNWAIRAIETLSG-KVELHGK 73 (93)
T ss_dssp CCCCCCCEEE---ECCCTTCCHHHHHHHHHH-TTC-CCSSCEEE----ETTEEEECCSCHHHHHHHHHHHTT-TCEETTE
T ss_pred CCCCCcEEEE---eCCCCCCCHHHHHHHHHH-cCC-ceEEEEEc----CCCEEEEEECCHHHHHHHHHHccC-CeeECCE
Confidence 4567799998 7888 999999999987 998 77777773 357999999999887766542111 2368999
Q ss_pred eeEEEecccCCC
Q 048589 271 DVRVRRFVPKRA 282 (283)
Q Consensus 271 ~iWaRky~pk~~ 282 (283)
.+-++...|++.
T Consensus 74 ~l~v~~a~~~~~ 85 (93)
T 2cqh_A 74 IMEVDYSVSKKL 85 (93)
T ss_dssp ECEEEECCCCCC
T ss_pred EEEEEEccCccc
Confidence 998888877653
No 79
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=1.4e-06 Score=66.31 Aligned_cols=82 Identities=21% Similarity=0.216 Sum_probs=62.0
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIHG 269 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing 269 (283)
+...+++|| +|.| ++++||+++|.+.||+ |+.|.+-. .++...||+|.|.+.+.....+...+... .|+|
T Consensus 6 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~~~G~--v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~~g 79 (104)
T 2dhg_A 6 SGPEYSLFV---GDLTPDVDDGMLYEFFVKVYPS--CRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAV-GLGS 79 (104)
T ss_dssp SSCCCCEEE---ECCCTTCCHHHHHHHHHHHCTT--EEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCC-SSSS
T ss_pred CCCCcEEEE---eCCCCCCCHHHHHHHHHHhCCC--eEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCc-ccCC
Confidence 455689988 7888 9999999999987998 66666644 67778999999999999887765211110 2789
Q ss_pred ceeEEEecccCC
Q 048589 270 KDVRVRRFVPKR 281 (283)
Q Consensus 270 k~iWaRky~pk~ 281 (283)
+.+-++...|+.
T Consensus 80 ~~l~v~~a~~~~ 91 (104)
T 2dhg_A 80 KPVRLSVAIPKA 91 (104)
T ss_dssp SCCCCCBCCCCC
T ss_pred EeEEEEEccCCC
Confidence 988777666554
No 80
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=6.6e-06 Score=63.55 Aligned_cols=77 Identities=12% Similarity=0.019 Sum_probs=58.4
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIHG 269 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing 269 (283)
.+..+|+|| +|.| ++++||+++|.+ ||. |+.|.+-. .++...||.|.|.+.+.....+..-+. ..|+|
T Consensus 12 ~~~~~~l~V---~nlp~~~~~~~l~~~f~~-~G~--i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g 83 (114)
T 2do0_A 12 GRLGSTVFV---ANLDYKVGWKKLKEVFSM-AGV--VVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNG--QLLFD 83 (114)
T ss_dssp CCCCSCEEE---ESCCTTCCHHHHHHHHTT-TSC--EEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTT--CEETT
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCC--CEeCC
Confidence 456789998 6888 999999999996 998 66666544 566678999999999887777542111 15789
Q ss_pred ceeEEEecc
Q 048589 270 KDVRVRRFV 278 (283)
Q Consensus 270 k~iWaRky~ 278 (283)
+.+-++...
T Consensus 84 ~~l~v~~a~ 92 (114)
T 2do0_A 84 RPMHVKMDE 92 (114)
T ss_dssp EECEEEECS
T ss_pred CEEEEEEcc
Confidence 999777554
No 81
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.21 E-value=7.6e-06 Score=61.18 Aligned_cols=77 Identities=18% Similarity=0.169 Sum_probs=60.8
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGK 270 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk 270 (283)
.+.+.+++|| +|.| ++++||+++|.+ ||+ |+.|.+-+ .||.|.|.+.+.....+..-+. ..|+|+
T Consensus 6 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~--v~~v~~~~-----~~afV~f~~~~~a~~A~~~l~g--~~~~g~ 72 (92)
T 2dgt_A 6 SGKASTKLHV---GNISPTCTNQELRAKFEE-YGP--VIECDIVK-----DYAFVHMERAEDAVEAIRGLDN--TEFQGK 72 (92)
T ss_dssp CCCSSEEEEE---ESCCSSCCHHHHHHHHHT-TSC--CCEEEECS-----SEEEEEESCHHHHHHHHHHHTT--EEETTE
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEC-----CEEEEEECCHHHHHHHHHHhCC--CeeCCc
Confidence 4567789998 7888 999999999997 998 77777743 2999999999887777642111 258999
Q ss_pred eeEEEecccCCC
Q 048589 271 DVRVRRFVPKRA 282 (283)
Q Consensus 271 ~iWaRky~pk~~ 282 (283)
.+-++...|++.
T Consensus 73 ~l~V~~a~~~~~ 84 (92)
T 2dgt_A 73 RMHVQLSTSRLR 84 (92)
T ss_dssp EEEEEESSCCCS
T ss_pred EEEEEEccCCCC
Confidence 999998887754
No 82
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.20 E-value=2.8e-06 Score=65.95 Aligned_cols=77 Identities=21% Similarity=0.235 Sum_probs=61.0
Q ss_pred CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589 195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHG 269 (283)
Q Consensus 195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing 269 (283)
.+.||+|| +|.| ++++||+++|.+ ||. |+.|.+-. +++...||+|.|.+.+....++ ..+. ..|+|
T Consensus 23 ~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g--~~~~g 93 (114)
T 2cq4_A 23 RDARTVFC---MQLAARIRPRDLEDFFSA-VGK--VRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTG--QRLLG 93 (114)
T ss_dssp HHHTEEEE---ESCCTTCCHHHHHHHHTT-TSC--EEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTT--EEETT
T ss_pred CCCCEEEE---eCCCCCCCHHHHHHHHHh-CCC--EeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCC--CEeCC
Confidence 45689988 7888 999999999986 998 66666653 5788899999999999988877 3222 36799
Q ss_pred ceeEEEecccC
Q 048589 270 KDVRVRRFVPK 280 (283)
Q Consensus 270 k~iWaRky~pk 280 (283)
+.+-++...|+
T Consensus 94 ~~l~V~~a~~~ 104 (114)
T 2cq4_A 94 VPIIVQASQAE 104 (114)
T ss_dssp EEEEEEEHHHH
T ss_pred eEEEEEecCCC
Confidence 99988876654
No 83
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.18 E-value=2.2e-06 Score=64.34 Aligned_cols=81 Identities=21% Similarity=0.269 Sum_probs=62.1
Q ss_pred CCCCceEEEEccCCcc--CCHHHHH----HHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELF----EFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNI 267 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~----~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~I 267 (283)
++..+++|| +|.| ++++||+ ++|.+ ||+ |+.|.+-+.++...||.|.|.+.+.....+..-+. ..+
T Consensus 5 ~~~~~~l~V---~nLp~~~~~~~l~~~l~~~f~~-~G~--i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~ 76 (97)
T 1nu4_A 5 TRPNHTIYI---NNLNEKIKKDELKKSLHAIFSR-FGQ--ILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQG--FPF 76 (97)
T ss_dssp -CCCSEEEE---ESCCTTSCHHHHHHHHHHHHGG-GSC--EEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTT--CEE
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHHHHHh-CCC--EEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCC--CEE
Confidence 345689988 6877 9999999 99986 998 77787765556678999999999987776642111 257
Q ss_pred cCceeEEEecccCCC
Q 048589 268 HGKDVRVRRFVPKRA 282 (283)
Q Consensus 268 ngk~iWaRky~pk~~ 282 (283)
+|+.+-++...|++.
T Consensus 77 ~g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 77 YDKPMRIQYAKTDSD 91 (97)
T ss_dssp TTEECEEEECSSCCT
T ss_pred CCcEEEEEEccCCCc
Confidence 999999988777653
No 84
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.18 E-value=3.1e-06 Score=67.62 Aligned_cols=80 Identities=13% Similarity=0.161 Sum_probs=59.2
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGK 270 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk 270 (283)
.+++.+++|| +|.| ++|+||+++|.+ ||. |..|.|-. ...||+|.|.+++.....+.....-...|+||
T Consensus 12 ~~~~~~~LfV---~nLp~~vte~dL~~lF~~-fG~--V~~v~i~~---~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr 82 (105)
T 1sjq_A 12 SGVPSRVIHI---RKLPIDVTEGEVISLGLP-FGK--VTNLLMLK---GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ 82 (105)
T ss_dssp CCCCCCEEEE---CSCCTTSCHHHHHHHHHH-HCC--EEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTSCCEETTE
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--EEEEEEEc---CCCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 3667789998 8988 999999999997 999 66666643 36899999999887665554211112378999
Q ss_pred eeEEEecccCC
Q 048589 271 DVRVRRFVPKR 281 (283)
Q Consensus 271 ~iWaRky~pk~ 281 (283)
.+.+..-.+|+
T Consensus 83 ~l~V~~A~~~~ 93 (105)
T 1sjq_A 83 PIYIQFSNHKE 93 (105)
T ss_dssp ECCBCCCSSSS
T ss_pred EEEEEEcCCCC
Confidence 99776655554
No 85
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.18 E-value=1.3e-06 Score=66.41 Aligned_cols=81 Identities=12% Similarity=0.117 Sum_probs=63.3
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIH 268 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~In 268 (283)
.+.+.+++|| +|.| ++++||+++|.+ ||. ... ..|.+ .++...||+|.|.+.+.....+. .+ ...|+
T Consensus 13 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~-v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~--g~~~~ 83 (101)
T 1fj7_A 13 ESTTPFNLFI---GNLNPNKSVAELKVAISE-LFA-KND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LT--GLKVF 83 (101)
T ss_dssp TCSCSEEEEE---ECCCTTSCHHHHHHHHHH-HHH-HHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GG--GCCBT
T ss_pred cCCCCCEEEE---eCCCCCCCHHHHHHHHHH-hCC-cce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cC--CcEEC
Confidence 4556789988 7888 999999999997 997 555 44444 68889999999999998777764 22 23578
Q ss_pred CceeEEEecccCCC
Q 048589 269 GKDVRVRRFVPKRA 282 (283)
Q Consensus 269 gk~iWaRky~pk~~ 282 (283)
|+.+-++...|++.
T Consensus 84 g~~l~V~~a~~~~~ 97 (101)
T 1fj7_A 84 GNEIKLEKPKGRDG 97 (101)
T ss_dssp TBCCEEECCSCCCC
T ss_pred CcEEEEEEcCCCCC
Confidence 99999988887764
No 86
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.18 E-value=2.2e-06 Score=67.40 Aligned_cols=78 Identities=15% Similarity=0.116 Sum_probs=59.7
Q ss_pred CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCcee
Q 048589 195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDV 272 (283)
Q Consensus 195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~i 272 (283)
+..+++|| +|.| ++|+|++++|.+ ||. |+.|.|-. ...||+|.|.+++.....+...+.-+..|+||.+
T Consensus 13 ~p~~~l~V---~nLp~~~te~~L~~~F~~-fG~--V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 13 SVSPVVHV---RGLCESVVEADLVEALEK-FGT--ICYVMMMP---FKRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CCCSEEEE---ESCCSSCCHHHHHHHHTT-TSC--EEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred CCCCEEEE---eCCCCCCCHHHHHHHHHh-CCC--EEEEEEEC---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 34589998 7888 999999999996 998 66777743 3689999999998877776532222356899999
Q ss_pred EEEecccCC
Q 048589 273 RVRRFVPKR 281 (283)
Q Consensus 273 WaRky~pk~ 281 (283)
.+....+++
T Consensus 84 ~V~~a~~~~ 92 (104)
T 1wex_A 84 FFNYSTSKR 92 (104)
T ss_dssp EEEECSSSS
T ss_pred EEEEccCcc
Confidence 887766554
No 87
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.18 E-value=1.1e-06 Score=65.19 Aligned_cols=75 Identities=17% Similarity=0.367 Sum_probs=54.8
Q ss_pred ceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCcee
Q 048589 198 RTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDV 272 (283)
Q Consensus 198 RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~i 272 (283)
||+|| +|.| ++++||+++|.+ ||+ |+++.+.. +++...||.|.|.+.+ ....+..-+.. .++|+.+
T Consensus 2 ~~l~V---~nLp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~--~~~g~~l 72 (90)
T 2ki2_A 2 RNIYV---GNLVYSATSEQVKELFSQ-FGK--VFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNT--DFMGRTI 72 (90)
T ss_dssp EEEEE---EEECTTSSHHHHTTTHHH-HTC--CSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSS--CCSSSSC
T ss_pred cEEEE---CCCCCCCCHHHHHHHHHh-cCC--EEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCC--EECCeEE
Confidence 67887 6777 999999999997 998 66666654 5788999999999999 66655432211 3789998
Q ss_pred EEEecccCC
Q 048589 273 RVRRFVPKR 281 (283)
Q Consensus 273 WaRky~pk~ 281 (283)
-++.-.|+.
T Consensus 73 ~V~~a~~~~ 81 (90)
T 2ki2_A 73 RVTEANPKK 81 (90)
T ss_dssp SEEEC----
T ss_pred EEEEcCCCC
Confidence 777665543
No 88
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.17 E-value=2.2e-06 Score=65.10 Aligned_cols=79 Identities=15% Similarity=0.209 Sum_probs=60.9
Q ss_pred CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589 195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHG 269 (283)
Q Consensus 195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing 269 (283)
++.||+|| +|.| ++++||+++|.+ ||+ |+.+.+.. +++...||.|.|.+.+....++...+. ..++|
T Consensus 6 ~~~~~l~V---~nlp~~~~~~~l~~~f~~-~G~--i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g 77 (104)
T 1p1t_A 6 RSLRSVFV---GNIPYEATEEQLKDIFSE-VGP--VVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNG--REFSG 77 (104)
T ss_dssp HHHSCEEE---ESCCTTSCHHHHHHHHHT-TSC--CSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSS--BSCSS
T ss_pred CCccEEEE---eCCCCcCCHHHHHHHHHh-cCC--eeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCC--CeeCC
Confidence 45689988 7888 999999999996 998 55665543 577789999999999998777642221 13699
Q ss_pred ceeEEEecccCC
Q 048589 270 KDVRVRRFVPKR 281 (283)
Q Consensus 270 k~iWaRky~pk~ 281 (283)
+.+-++...|++
T Consensus 78 ~~l~v~~a~~~~ 89 (104)
T 1p1t_A 78 RALRVDNAASEK 89 (104)
T ss_dssp SCBEEEETTCTT
T ss_pred cEEEEEeCCCcc
Confidence 999888777654
No 89
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.17 E-value=4.4e-06 Score=63.31 Aligned_cols=77 Identities=18% Similarity=0.353 Sum_probs=62.0
Q ss_pred CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHh---CCCCeeeEE
Q 048589 192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLIL---GENELMQFN 266 (283)
Q Consensus 192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL---~g~~~~kf~ 266 (283)
....+.+++|| +|.| ++++||+++|.+ ||+ |+.|.|.+ ...||.|.|.+.+....++ +|..
T Consensus 10 ~~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~~~~---~kg~afV~f~~~~~a~~a~~~l~g~~----- 75 (99)
T 2cpj_A 10 KTFTQRSRLFV---GNLPPDITEEEMRKLFEK-YGK--AGEVFIHK---DKGFGFIRLETRTLAEIAKVELDNMP----- 75 (99)
T ss_dssp CCCCCTTEEEE---ESCCTTCCHHHHHHHTST-TCC--CSEEEEET---TTTEEEEECSSSHHHHHHHHHHTTCC-----
T ss_pred CcCCCCCEEEE---eCCCCCCCHHHHHHHHhh-cCC--eEEEEEec---CCCEEEEEECCHHHHHHHHHHhCCCE-----
Confidence 34567799999 7887 999999999996 998 77787743 3689999999999877766 4533
Q ss_pred EcCceeEEEecccCCC
Q 048589 267 IHGKDVRVRRFVPKRA 282 (283)
Q Consensus 267 Ingk~iWaRky~pk~~ 282 (283)
|+|+.+-++...|++.
T Consensus 76 ~~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 76 LRGKQLRVRFACHSAS 91 (99)
T ss_dssp BTTBCCEEEESSCCSC
T ss_pred eCCceEEEEEcCCCCC
Confidence 7999998888877654
No 90
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.17 E-value=3.5e-06 Score=63.47 Aligned_cols=81 Identities=14% Similarity=0.043 Sum_probs=60.8
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIH 268 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~In 268 (283)
.++..+++|| +|.| ++++||+++|.+ ||. +.+...+.+ .++...||.|.|.+++....++...+. ..|+
T Consensus 11 ~~~~~~~l~v---~nLp~~~t~~~l~~~F~~-~G~-v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g--~~~~ 83 (98)
T 2cqp_A 11 GKPGPTIIKV---QNMPFTVSIDEILDFFYG-YQV-IPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLND--RPIG 83 (98)
T ss_dssp CCCSSEEEEE---ESCCTTCCHHHHHHHTTT-SCC-CTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTT--CEET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHH-cCC-ccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCC--CeeC
Confidence 4556688988 7888 999999999986 998 443333333 677889999999999998887753221 1689
Q ss_pred CceeEEEecccC
Q 048589 269 GKDVRVRRFVPK 280 (283)
Q Consensus 269 gk~iWaRky~pk 280 (283)
|+.+-++.-.++
T Consensus 84 g~~l~V~~a~~~ 95 (98)
T 2cqp_A 84 SRKVKLVLGSGP 95 (98)
T ss_dssp TEECEEEESSCS
T ss_pred CeEEEEEEcCCC
Confidence 999988775543
No 91
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.16 E-value=3.4e-06 Score=66.05 Aligned_cols=79 Identities=14% Similarity=0.160 Sum_probs=60.6
Q ss_pred CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCcee
Q 048589 195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDV 272 (283)
Q Consensus 195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~i 272 (283)
+..+++|| ++.| ++|+|++++|.+ ||. |+.|.|-. ...||+|.|.+++.....+...+.-...|+||.+
T Consensus 13 ~p~~~l~V---~nLp~~~te~~L~~~F~~-fG~--v~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 13 APSRVLHI---RKLPGEVTETEVIALGLP-FGK--VTNILMLK---GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp SCCSEEEE---ESCCTTCCHHHHHHTTTT-TSC--EEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--EEEEEEEC---CCCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 44689988 7888 999999999996 998 66676643 2789999999998877776632212357999999
Q ss_pred EEEecccCCC
Q 048589 273 RVRRFVPKRA 282 (283)
Q Consensus 273 WaRky~pk~~ 282 (283)
.+....++..
T Consensus 84 ~V~~a~~~~~ 93 (101)
T 2cq1_A 84 YIQYSNHKEL 93 (101)
T ss_dssp EEEECSCSSC
T ss_pred EEEEcCcccC
Confidence 8887766643
No 92
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.15 E-value=2.5e-06 Score=65.24 Aligned_cols=80 Identities=13% Similarity=0.129 Sum_probs=59.9
Q ss_pred CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec----CCCCCceEEEEecChHHHHHHhCCCCeeeE
Q 048589 192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN----CRDQSLYARVIVRSPAFITLILGENELMQF 265 (283)
Q Consensus 192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~----~~~qplfariVf~s~~~vd~vL~g~~~~kf 265 (283)
..+...||+|| +|.| ++++||+++|.+ || |+.|.|-. +++..+||.|.|.+.+.....+ ..+. .
T Consensus 14 ~~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G---i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g--~ 83 (100)
T 2j76_E 14 LPKSPPYTAFL---GNLPYDVTEESIKEFFRG-LN---ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNE--E 83 (100)
T ss_dssp ------CEEEE---SCCSSCCSSSHHHHHSCS-SC---EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTT--C
T ss_pred CCCCCCcEEEE---eCCCCCCCHHHHHHHHHh-cC---CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCC--C
Confidence 45667899998 8888 999999999996 87 77777753 4777899999999999988877 3222 2
Q ss_pred EEcCceeEEEecccCC
Q 048589 266 NIHGKDVRVRRFVPKR 281 (283)
Q Consensus 266 ~Ingk~iWaRky~pk~ 281 (283)
.|+|+.+-++...|++
T Consensus 84 ~~~g~~l~V~~a~~~~ 99 (100)
T 2j76_E 84 SLGNRRIRVDVADQAQ 99 (100)
T ss_dssp CBTTBCCCCEECCCSC
T ss_pred EECCeEEEEEeccCCC
Confidence 4899999888777765
No 93
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.15 E-value=8.1e-06 Score=64.37 Aligned_cols=82 Identities=12% Similarity=0.192 Sum_probs=63.2
Q ss_pred CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589 192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNI 267 (283)
Q Consensus 192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~I 267 (283)
..++..+++|| +|.| ++++||+++|.+ ||+ |+.|.+.. .++...||.|.|.+.+.....+..-+. ..|
T Consensus 30 ~~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g--~~~ 101 (124)
T 2kt5_A 30 EGVETGAKLLV---SNLDFGVSDADIQELFAE-FGT--LKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKG--VPL 101 (124)
T ss_dssp CCCSSCEEEEE---ESCCSSCCHHHHHHHHHT-TSC--CSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTT--EES
T ss_pred CCCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCC--CEE
Confidence 34566789988 7888 999999999997 998 66776654 677889999999999998877652221 268
Q ss_pred cCceeEEEecccCC
Q 048589 268 HGKDVRVRRFVPKR 281 (283)
Q Consensus 268 ngk~iWaRky~pk~ 281 (283)
+|+.+-++.-.|+.
T Consensus 102 ~g~~l~V~~a~~~~ 115 (124)
T 2kt5_A 102 DGRPMDIQLVASQI 115 (124)
T ss_dssp SSCEEEEEEECCTT
T ss_pred CCcEEEEEEeCCCC
Confidence 99999777655543
No 94
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.15 E-value=4.5e-06 Score=63.03 Aligned_cols=78 Identities=18% Similarity=0.195 Sum_probs=61.0
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEc--C
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIH--G 269 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~In--g 269 (283)
+...+++|| +|.| ++++||+++|.+ ||+ |+.|.|.. ...||.|.|.+.+....++..-+. ..|+ |
T Consensus 14 ~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--v~~v~~~~---~~g~afV~f~~~~~A~~A~~~l~g--~~~~~~g 82 (97)
T 1why_A 14 ANPTTRLWV---GGLGPNTSLAALAREFDR-FGS--IRTIDHVK---GDSFAYIQYESLDAAQAACAKMRG--FPLGGPD 82 (97)
T ss_dssp CCCCSCEEE---ECCCSSCCHHHHHHHHHT-TSC--EEEEEECS---SSCCEEEEESSHHHHHHHHHHHTT--CBCSSSS
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eeEEEEeC---CCCEEEEEECCHHHHHHHHHHHCC--CEeCCCC
Confidence 445689998 6777 999999999986 998 78888854 267999999999987776652111 1468 9
Q ss_pred ceeEEEecccCCC
Q 048589 270 KDVRVRRFVPKRA 282 (283)
Q Consensus 270 k~iWaRky~pk~~ 282 (283)
+.+-++...|++.
T Consensus 83 ~~l~V~~a~~~~~ 95 (97)
T 1why_A 83 RRLRVDFAKSGPS 95 (97)
T ss_dssp CBCEEEECCCCCC
T ss_pred cEEEEEECCCCCC
Confidence 9999998888865
No 95
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.15 E-value=1.4e-05 Score=60.98 Aligned_cols=76 Identities=17% Similarity=0.233 Sum_probs=59.9
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCce
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKD 271 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~ 271 (283)
....+++|| +|.| ++++||+++|.+ ||+ |+.|.+-+ .||.|.|.+++.....+..-+. ..|+|+.
T Consensus 8 ~~~~~~l~V---~nl~~~~t~~~l~~~F~~-~G~--i~~v~~~~-----~~afV~f~~~~~a~~A~~~l~g--~~~~g~~ 74 (103)
T 2dgu_A 8 MAKVKVLFV---RNLANTVTEEILEKAFSQ-FGK--LERVKKLK-----DYAFIHFDERDGAVKAMEEMNG--KDLEGEN 74 (103)
T ss_dssp CCCCCCEEE---ECCCTTCCHHHHHHHHHH-HSC--EEEEEECS-----SCEEEEESSHHHHHHHHHHHTT--EEETTEE
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--EEEEEEEC-----CEEEEEeCCHHHHHHHHHHHCC--CccCCCE
Confidence 455689998 7887 999999999997 998 77777743 3999999999998777653111 2589999
Q ss_pred eEEEecccCCC
Q 048589 272 VRVRRFVPKRA 282 (283)
Q Consensus 272 iWaRky~pk~~ 282 (283)
+-++...|++.
T Consensus 75 l~v~~a~~~~~ 85 (103)
T 2dgu_A 75 IEIVFAKPPDQ 85 (103)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEEcCCCcc
Confidence 99988877653
No 96
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.15 E-value=8.7e-06 Score=66.63 Aligned_cols=82 Identities=16% Similarity=0.153 Sum_probs=62.0
Q ss_pred CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEE
Q 048589 192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFN 266 (283)
Q Consensus 192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~ 266 (283)
...++.+|+|| +|.| ++++||+++|.+ ||+ |+.|.|-. +++...||+|.|.+++....++..-+. ..
T Consensus 34 ~~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g--~~ 105 (156)
T 1h2v_Z 34 KLLKKSCTLYV---GNLSFYTTEEQIYELFSK-SGD--IKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYING--TR 105 (156)
T ss_dssp TTTTTCCEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTT--SE
T ss_pred ccCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC--CE
Confidence 34556789998 6888 999999999986 998 77777754 567788999999999998887763221 25
Q ss_pred EcCceeEEEecccCC
Q 048589 267 IHGKDVRVRRFVPKR 281 (283)
Q Consensus 267 Ingk~iWaRky~pk~ 281 (283)
|+|+.+-++...|++
T Consensus 106 ~~g~~l~V~~a~~~~ 120 (156)
T 1h2v_Z 106 LDDRIIRTDWDAGFK 120 (156)
T ss_dssp ETTEECEEEEESCCC
T ss_pred ECCeEEEEEECCCCC
Confidence 799998665555443
No 97
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.15 E-value=8.8e-06 Score=64.12 Aligned_cols=75 Identities=16% Similarity=0.163 Sum_probs=58.9
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEe-ec--CCCCCceEEEEecChHHHHHHh---CCCCeeeE
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKM-GN--CRDQSLYARVIVRSPAFITLIL---GENELMQF 265 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m-~~--~~~qplfariVf~s~~~vd~vL---~g~~~~kf 265 (283)
+...||+|| ++.| +++++++++|.+ ||+ |++|.+ .+ +++...||+|.|.+.+..+..+ +|.
T Consensus 3 ~~p~~~lfV---~nL~~~~te~~L~~~F~~-~G~--i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~----- 71 (110)
T 3s8s_A 3 QIPLKEVTF---ARLNDNVRETFLKDMCRK-YGE--VEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLT----- 71 (110)
T ss_dssp CSCCCEEEE---ESCCTTCCHHHHHHHHTT-TSC--EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-----
T ss_pred CCCCcEEEE---ECCCCCCCHHHHHHHHHh-cCC--eeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCC-----
Confidence 345689988 7777 999999999985 998 566554 34 6888999999999999977765 554
Q ss_pred EEcCceeEEEeccc
Q 048589 266 NIHGKDVRVRRFVP 279 (283)
Q Consensus 266 ~Ingk~iWaRky~p 279 (283)
.++|+.+-+..-.+
T Consensus 72 ~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 72 SVMGNIIHAQLDIK 85 (110)
T ss_dssp EETTEECEEEECST
T ss_pred EECCeEEEEEECCC
Confidence 58999998765433
No 98
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.14 E-value=3.6e-06 Score=63.18 Aligned_cols=80 Identities=26% Similarity=0.190 Sum_probs=64.1
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGK 270 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk 270 (283)
..++.+|+|| +|.| ++++||+++|.+ ||+ |..+ ...+....||.|.|.+++.....+..-+. ..|+|+
T Consensus 12 ~~~~~~~l~V---~nL~~~~t~~~l~~~F~~-~g~--v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~ 81 (96)
T 1fjc_A 12 KVRAARTLLA---KNLSFNITEDELKEVFED-ALE--IRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQG--AEIDGR 81 (96)
T ss_dssp TTTGGGEEEE---ESCCSSCCHHHHHHHHCS-EEE--ECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTE--EEETTE
T ss_pred cCCCCCEEEE---eCCCCCCCHHHHHHHHhh-CCc--EEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCC--CEECCe
Confidence 3456789998 7888 999999999997 897 4444 33688889999999999998888764332 468999
Q ss_pred eeEEEecccCCC
Q 048589 271 DVRVRRFVPKRA 282 (283)
Q Consensus 271 ~iWaRky~pk~~ 282 (283)
.+-++...|+..
T Consensus 82 ~l~v~~a~~~~~ 93 (96)
T 1fjc_A 82 SVSLYYTGEKGG 93 (96)
T ss_dssp EEEEEECSSSCC
T ss_pred EEEEEEcCCCCC
Confidence 999988877764
No 99
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.13 E-value=2.7e-05 Score=60.14 Aligned_cols=77 Identities=13% Similarity=0.091 Sum_probs=60.4
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC--
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHG-- 269 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing-- 269 (283)
+...+++|| +|.| ++++||+++|.+ ||+ |+.+.+... .||+|.|.+++.....+...+. ..|+|
T Consensus 12 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~--i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g--~~~~g~~ 79 (108)
T 1x4c_A 12 RRSENRVVV---SGLPPSGSWQDLKDHMRE-AGD--VCYADVYRD----GTGVVEFVRKEDMTYAVRKLDN--TKFRSHE 79 (108)
T ss_dssp CSCCCEEEE---ESCCSSCCHHHHHHHHGG-GSC--EEEEEEETT----TEEEEEESSHHHHHHHHHHSSS--EEEECTT
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--EeEEEEecC----CEEEEEECCHHHHHHHHHHHCc--CCccCCc
Confidence 445678888 7888 999999999996 998 777777442 8999999999887777653222 25788
Q ss_pred ---ceeEEEecccCCC
Q 048589 270 ---KDVRVRRFVPKRA 282 (283)
Q Consensus 270 ---k~iWaRky~pk~~ 282 (283)
+.+-++...|++.
T Consensus 80 ~~~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 80 GETAYIRVKVDGPRSP 95 (108)
T ss_dssp SCEEEEEEEESSCCSC
T ss_pred CcceEEEEEeCCCCCC
Confidence 9999998888765
No 100
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.13 E-value=5.3e-06 Score=59.49 Aligned_cols=65 Identities=17% Similarity=0.275 Sum_probs=52.3
Q ss_pred CCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCceeEEEe
Q 048589 206 KGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRVRR 276 (283)
Q Consensus 206 ~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~iWaRk 276 (283)
+|.| ++++|++++|.+ ||+ |+.+.+.. +++...||.|.|.+++..+.++. .+ ...|+|+.+-++.
T Consensus 5 ~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~--~~~~~g~~l~v~~ 74 (75)
T 2mss_A 5 GGLSVNTTVEDVKHYFEQ-FGK--VDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IH--FHEINNKMVECKK 74 (75)
T ss_dssp ECCCSSCCHHHHHHHHHT-TSC--CSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SS--CCCSSSCCCEEEC
T ss_pred ecCCCCCCHHHHHHHHHh-cCC--EEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CC--CCEECCEEEEEEe
Confidence 7888 999999999996 998 66776654 57788999999999999999886 22 2357898887654
No 101
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.13 E-value=7.8e-06 Score=67.46 Aligned_cols=79 Identities=20% Similarity=0.356 Sum_probs=62.0
Q ss_pred CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589 195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHG 269 (283)
Q Consensus 195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing 269 (283)
...+++|| +|.| ++++||+++|.+ ||+ |+.|.+.. .+....||.|-|.+.+....+|... ...++|
T Consensus 102 ~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~---~~~~~G 172 (196)
T 1l3k_A 102 LTVKKIFV---GGIKEDTEEHHLRDYFEQ-YGK--IEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQK---YHTVNG 172 (196)
T ss_dssp -CCSEEEE---ECCTTTCCHHHHHHHHTT-TSC--EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCS---CCEETT
T ss_pred CCcceEEE---eCCCCCCCHHHHHHHHhc-CCC--eEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhC---CcEECC
Confidence 45589988 7888 999999999985 998 66666543 5778899999999999988888642 348999
Q ss_pred ceeEEEecccCCC
Q 048589 270 KDVRVRRFVPKRA 282 (283)
Q Consensus 270 k~iWaRky~pk~~ 282 (283)
+.+-++...||..
T Consensus 173 ~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 173 HNCEVRKALSKQE 185 (196)
T ss_dssp EECEEEECC----
T ss_pred EEEEEEecCChhH
Confidence 9999999988864
No 102
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.13 E-value=8.9e-06 Score=64.47 Aligned_cols=79 Identities=14% Similarity=0.105 Sum_probs=62.3
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCce
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKD 271 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~ 271 (283)
.+..|++|| ++.| +|++|+++.|.+ ||. |.+|.|-+ ...||+|.|.+++.....+..-+...+.|+||.
T Consensus 18 ~~ps~~l~V---~NLp~~~te~~L~~lF~~-fG~--V~~v~i~~---~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~ 88 (100)
T 3r27_A 18 TPASPVVHI---RGLIDGVVEADLVEALQE-FGP--ISYVVVMP---KKRQALVEFEDVLGACNAVNYAADNQIYIAGHP 88 (100)
T ss_dssp CCCCSEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEE
T ss_pred CCCCcEEEE---eCCCCCCCHHHHHHHHhc-cCC--EEEEEEEc---CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcE
Confidence 344689988 8888 999999999997 998 77777743 457999999999987777764444457899999
Q ss_pred eEEEecccCC
Q 048589 272 VRVRRFVPKR 281 (283)
Q Consensus 272 iWaRky~pk~ 281 (283)
+.+.--.+|.
T Consensus 89 i~V~~S~~k~ 98 (100)
T 3r27_A 89 AFVNYSTSQK 98 (100)
T ss_dssp EEEEECSCSC
T ss_pred EEEEeccccc
Confidence 9887766654
No 103
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.13 E-value=2.4e-05 Score=59.21 Aligned_cols=80 Identities=15% Similarity=0.108 Sum_probs=60.8
Q ss_pred CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589 192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHG 269 (283)
Q Consensus 192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing 269 (283)
......+++|| +|.| ++++||+++|.+ ||.+-|++|.+. ..||.|.|.+.+.....+...+. ..|+|
T Consensus 10 ~~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~g~g~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g--~~~~g 78 (99)
T 2cpd_A 10 DTMSSVKILYV---RNLMLSTSEEMIEKEFNN-IKPGAVERVKKI-----RDYAFVHFSNREDAVEAMKALNG--KVLDG 78 (99)
T ss_dssp SCSSCCCEEEE---ESCCTTCCHHHHHHHHHT-TSTTCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHSS--EEETT
T ss_pred cccCCcCEEEE---eCCCCCCCHHHHHHHHHh-cCCcceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhCC--CEeCC
Confidence 34556789998 7887 999999999997 943237788773 35999999999987777652221 26799
Q ss_pred ceeEEEecccCCC
Q 048589 270 KDVRVRRFVPKRA 282 (283)
Q Consensus 270 k~iWaRky~pk~~ 282 (283)
+.+-++...|++.
T Consensus 79 ~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 79 SPIEVTLAKPVDK 91 (99)
T ss_dssp EEEEEECCCCCCC
T ss_pred cEEEEEECCCCCC
Confidence 9998888877654
No 104
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.12 E-value=5.2e-06 Score=66.84 Aligned_cols=77 Identities=16% Similarity=0.319 Sum_probs=64.2
Q ss_pred CCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589 196 TDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHGK 270 (283)
Q Consensus 196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk 270 (283)
..+++|| +|.| ++++||+++|.+ ||+ |+.+.+.. .+.+.+||.|.|.+.+....++.- -...++|+
T Consensus 86 ~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~---~~~~~~g~ 156 (167)
T 2cjk_A 86 KTGKIFV---GGIGPDVRPKEFEEFFSQ-WGT--IIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQN---KFIDFKDR 156 (167)
T ss_dssp HCEEEEE---EEECTTCCHHHHHHHHHT-TSC--CSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHC---SEECSSSS
T ss_pred CCCeEEE---CCCCCCCCHHHHHHHHHh-Ccc--EEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhC---CCEEeCCe
Confidence 4568888 7777 999999999996 998 66676653 578889999999999999988872 35678999
Q ss_pred eeEEEecccCC
Q 048589 271 DVRVRRFVPKR 281 (283)
Q Consensus 271 ~iWaRky~pk~ 281 (283)
.+.++...||.
T Consensus 157 ~i~V~~a~pk~ 167 (167)
T 2cjk_A 157 KIEIKRAEPRH 167 (167)
T ss_dssp CEEEEECCCCC
T ss_pred EEEEeecCCCC
Confidence 99999988874
No 105
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.11 E-value=1.1e-05 Score=64.27 Aligned_cols=73 Identities=21% Similarity=0.238 Sum_probs=57.7
Q ss_pred ceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHh---CCCCeeeEEEcCc
Q 048589 198 RTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLIL---GENELMQFNIHGK 270 (283)
Q Consensus 198 RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL---~g~~~~kf~Ingk 270 (283)
||+|| +|.| ++++||+++|.+ ||+ |++|.+-. .++...||.|.|.+++.....+ +|. .++|+
T Consensus 1 R~l~V---~nlp~~~t~~~l~~~f~~-~G~--i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~-----~~~g~ 69 (166)
T 3md3_A 1 RVLYV---GNLDKAITEDILKQYFQV-GGP--IANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGK-----QIENN 69 (166)
T ss_dssp CEEEE---EEEETTCCHHHHHHHHGG-GSC--EEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTC-----EETTE
T ss_pred CEEEE---CCCCCcCCHHHHHHHHHh-cCC--eEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCC-----ccCCC
Confidence 78888 7888 999999999996 998 66666643 5677899999999999988777 343 57899
Q ss_pred eeEEEecccCC
Q 048589 271 DVRVRRFVPKR 281 (283)
Q Consensus 271 ~iWaRky~pk~ 281 (283)
.+-++...++.
T Consensus 70 ~i~v~~~~~~~ 80 (166)
T 3md3_A 70 IVKINWAFQSQ 80 (166)
T ss_dssp ECEEEECCCCC
T ss_pred eeEEEEcCCCC
Confidence 98877665543
No 106
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.11 E-value=5.4e-06 Score=69.34 Aligned_cols=80 Identities=20% Similarity=0.213 Sum_probs=59.7
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhC--CceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYG--EGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNI 267 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G--~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~I 267 (283)
.++.+++|| +|.| ++++||+++|.+ || + +++.-.+.+ +++..+||+|.|.+.+..+.++..-+. ..|
T Consensus 52 ~~~~~~lfV---gnLp~~~te~~L~~~F~~-~G~i~-v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng--~~~ 124 (156)
T 3n9u_C 52 RNRRAAVYV---GSFSWWTTDQQLIQVIRS-IGVYD-VVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPG--KVL 124 (156)
T ss_dssp ----CEEEE---ECCCTTCCHHHHHHHHHH-TTCCC-EEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTT--CEE
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHH-HCCcc-EEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC--CEE
Confidence 456789988 7888 999999999975 99 7 444444444 788899999999999998877653221 268
Q ss_pred cCceeEEEecccC
Q 048589 268 HGKDVRVRRFVPK 280 (283)
Q Consensus 268 ngk~iWaRky~pk 280 (283)
+|+.+-++...|+
T Consensus 125 ~Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 125 NGEKVDVRPATRQ 137 (156)
T ss_dssp TTEECEEEECCHH
T ss_pred CCeEeEEEEcCCC
Confidence 9999998877664
No 107
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.10 E-value=5.9e-06 Score=62.56 Aligned_cols=74 Identities=16% Similarity=0.298 Sum_probs=57.3
Q ss_pred CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeE--------EEeec---CCCCCceEEEEecChHHHHHHh-
Q 048589 192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVED--------IKMGN---CRDQSLYARVIVRSPAFITLIL- 257 (283)
Q Consensus 192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~--------v~m~~---~~~qplfariVf~s~~~vd~vL- 257 (283)
..+...+++|| +|.| ++++||+++|.+ ||. |+. +.+-. +++..+||.|.|.+.+.....+
T Consensus 8 ~~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~--i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~ 81 (99)
T 2la6_A 8 HSHSDNNTIFV---QGLGENVTIESVADYFKQ-IGI--IKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAID 81 (99)
T ss_dssp CSCCCCSEEEE---ECCCSSCCHHHHHHHHTT-TSC--BCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHH
T ss_pred CCCCCCCEEEE---eCCCCCCCHHHHHHHHHH-hCC--EeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHH
Confidence 44667789988 7888 999999999996 998 444 44432 6788899999999999877766
Q ss_pred --CCCCeeeEEEcCceeEEEe
Q 048589 258 --GENELMQFNIHGKDVRVRR 276 (283)
Q Consensus 258 --~g~~~~kf~Ingk~iWaRk 276 (283)
+|. .++|+.+-++.
T Consensus 82 ~l~g~-----~~~g~~l~V~~ 97 (99)
T 2la6_A 82 WFDGK-----EFSGNPIKVSF 97 (99)
T ss_dssp HHTTC-----BSSSSBCEEEE
T ss_pred HhCCC-----EeCCcEEEEEe
Confidence 453 47888886653
No 108
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.10 E-value=8.4e-06 Score=63.69 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=59.7
Q ss_pred CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589 192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHG 269 (283)
Q Consensus 192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing 269 (283)
..+.+.+++|| +|.| ++++||+++|.+ ||+ |+.|.|- ..||.|.|.+.+.....+..-+.. .++|
T Consensus 26 ~~~~~~~~l~V---~nLp~~~t~~~L~~~F~~-~G~--i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~--~~~g 92 (108)
T 2jvo_A 26 EGELSNTRLFV---RPFPLDVQESELNEIFGP-FGP--MKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGK--SFAN 92 (108)
T ss_dssp --CCSCSEEEE---CSSCTTCCHHHHHHHHTT-TSC--CCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTC--EETT
T ss_pred CCCCCCCEEEE---ECCCCCCCHHHHHHHHHh-cCC--EEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCC--EECC
Confidence 44667799998 8888 999999999986 998 7778774 689999999999877766421111 4699
Q ss_pred ceeEEEecccCC
Q 048589 270 KDVRVRRFVPKR 281 (283)
Q Consensus 270 k~iWaRky~pk~ 281 (283)
+.+-+....|++
T Consensus 93 ~~l~V~~a~~~~ 104 (108)
T 2jvo_A 93 QPLEVVYSKLPA 104 (108)
T ss_dssp EECEEESCSCCC
T ss_pred eEEEEEEecCCC
Confidence 999888776654
No 109
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.10 E-value=1e-06 Score=69.87 Aligned_cols=80 Identities=14% Similarity=0.179 Sum_probs=61.9
Q ss_pred CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589 192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNI 267 (283)
Q Consensus 192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~I 267 (283)
..+.+.+++|| +|.| ++++||++||.. ||. ..+.+.|.+ .++...||+|.|.+++.....|. .+ ...|
T Consensus 20 ~~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~-v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~--g~~~ 91 (124)
T 1wel_A 20 SPHEAGFCVYL---KGLPFEAENKHVIDFFKK-LDI-VEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RH--KQYM 91 (124)
T ss_dssp SCCCCCCEEEE---ECCCTTCCHHHHHHHSCS-SCB-CTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SC--SBCS
T ss_pred CCCCCCcEEEE---eCCCCCCCHHHHHHHHHh-cCC-ccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hC--CCeE
Confidence 34567789988 8888 999999999986 997 544244433 78889999999999999888887 33 2368
Q ss_pred cCceeEEEeccc
Q 048589 268 HGKDVRVRRFVP 279 (283)
Q Consensus 268 ngk~iWaRky~p 279 (283)
+|+.+.+....+
T Consensus 92 ~gr~i~V~~a~~ 103 (124)
T 1wel_A 92 GNRFIQVHPITK 103 (124)
T ss_dssp TTSCBEEEEECH
T ss_pred CCcEEEEEECCH
Confidence 999998876544
No 110
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.10 E-value=1.5e-05 Score=58.39 Aligned_cols=71 Identities=23% Similarity=0.402 Sum_probs=56.3
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhh----C-------CceeeEEEeecCCCCCceEEEEecChHHHHHHhCCC
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRY----G-------EGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGEN 260 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~----G-------~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~ 260 (283)
+.+.||+|| +|.| ++++|++++|.+ | | + |.++.+. ....||.|.|.+++.....+ ..
T Consensus 3 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~~~~~g~~~~~~~~--v~~~~~~---~~kg~afV~f~~~~~a~~A~-~l 72 (87)
T 2hzc_A 3 LGSARRLYV---GNIPFGITEEAMMDFFNA-QMRLGGLTQAPGNP--VLAVQIN---QDKNFAFLEFRSVDETTQAM-AF 72 (87)
T ss_dssp SGGGGEEEE---ESCCTTCCHHHHHHHHHH-HHHHTTCCSSSSCS--EEEEEEC---SSSSEEEEEESSHHHHHHHG-GG
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHH-HhhhcccccCCCCc--ceEEEec---CCCcEEEEEcCCHHHHHHHH-hc
Confidence 456789988 7888 999999999997 8 7 6 7777773 34789999999999988887 43
Q ss_pred CeeeEEEcCceeEEEe
Q 048589 261 ELMQFNIHGKDVRVRR 276 (283)
Q Consensus 261 ~~~kf~Ingk~iWaRk 276 (283)
+. ..++|+.+-+++
T Consensus 73 ~g--~~~~g~~l~V~r 86 (87)
T 2hzc_A 73 DG--IIFQGQSLKIRR 86 (87)
T ss_dssp TT--CEETTEECEEEC
T ss_pred CC--CEECCeEEEEeC
Confidence 32 258999987764
No 111
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.09 E-value=1.5e-06 Score=69.68 Aligned_cols=82 Identities=11% Similarity=0.107 Sum_probs=60.9
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceee---EEEeec-CCCCCceEEEEecChHHHHHH---hCCCCeee
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVE---DIKMGN-CRDQSLYARVIVRSPAFITLI---LGENELMQ 264 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve---~v~m~~-~~~qplfariVf~s~~~vd~v---L~g~~~~k 264 (283)
....+++|| +|.| ++++||+++|.+ ||. ..+ +|.+.+ +++..+||+|.|.+. ..... |+|. ...
T Consensus 20 ~~~~~~lfV---~nL~~~~te~~L~~~F~~-~G~-v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~-~~~ 92 (131)
T 2m2b_A 20 ENANDTIIL---RNLNPHSTMDSILGALAP-YAV-LSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQAL-HPP 92 (131)
T ss_dssp SCCCCEEEE---CSCCTTCCSHHHHHHHGG-GCC-CCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTC-CCS
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHH-hCC-cceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCC-CCC
Confidence 456789988 8988 999999999986 998 433 343333 788999999999999 54444 4553 234
Q ss_pred EEEcCceeEEEecccCCC
Q 048589 265 FNIHGKDVRVRRFVPKRA 282 (283)
Q Consensus 265 f~Ingk~iWaRky~pk~~ 282 (283)
+.|+||.+-++...|++.
T Consensus 93 ~~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 93 LTIDGKTINVEFAKGSKR 110 (131)
T ss_dssp CCGGGCCCCCEECCCSCC
T ss_pred ccCCCEEEEEEECCCCCC
Confidence 568999998877777643
No 112
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.08 E-value=2.6e-05 Score=60.05 Aligned_cols=78 Identities=14% Similarity=0.139 Sum_probs=60.5
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGK 270 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk 270 (283)
.+...+|+|| +|.| ++++||+++|.+ ||. |+.|.|-.. ..||+|.|.+.+....++..-+. ..|+|+
T Consensus 21 ~~~~~~~l~V---~nl~~~~t~~~l~~~F~~-~G~--i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g--~~~~g~ 89 (109)
T 1x4g_A 21 SSPKNCTVYC---GGIASGLTDQLMRQTFSP-FGQ--IMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNG--TTIEGH 89 (109)
T ss_dssp SCSSCCEEEE---ECCSSCCCHHHHHHHHHH-HSC--EEEEEEETT---TTEEEEEESSHHHHHHHHHHHTT--CEETTE
T ss_pred CCCCCcEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCC--CEECCc
Confidence 3556789998 8888 999999999996 998 777777442 78999999999987777632111 268999
Q ss_pred eeEEEecccCC
Q 048589 271 DVRVRRFVPKR 281 (283)
Q Consensus 271 ~iWaRky~pk~ 281 (283)
.+-++...|++
T Consensus 90 ~l~v~~a~~~~ 100 (109)
T 1x4g_A 90 VVKCYWGKESP 100 (109)
T ss_dssp ECEEECCCCCC
T ss_pred EEEEEecCCCC
Confidence 99887776654
No 113
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.07 E-value=2e-06 Score=64.43 Aligned_cols=74 Identities=20% Similarity=0.166 Sum_probs=53.3
Q ss_pred eEEEEccCCcc--CCHHHHHHHHHhhhC--CceeeEEEeec--CCCCCceEEEEecChHHHHHHh---CCCCeeeEEEcC
Q 048589 199 TLFATFSKGHP--ITRAELFEFFTRRYG--EGCVEDIKMGN--CRDQSLYARVIVRSPAFITLIL---GENELMQFNIHG 269 (283)
Q Consensus 199 T~FvTFS~G~P--vse~Ei~~fFt~~~G--~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL---~g~~~~kf~Ing 269 (283)
|+|| +|.| ++++||+++|.+ || + ..+.-.+.+ +++..+||+|.|.+.+.....+ +|. .++|
T Consensus 3 ~l~V---~nL~~~~t~~~l~~~F~~-~G~~~-v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~-----~~~g 72 (90)
T 3p5t_L 3 ALYI---GNLTWWTTDEDLTEAVHS-LGVND-ILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKR-----ELHG 72 (90)
T ss_dssp -CEE---ESCCTTCCHHHHHHHHHT-TTCCC-CCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGS-----CSSS
T ss_pred EEEE---eCCCCCCCHHHHHHHHHH-hCCCc-eEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCC-----eeCC
Confidence 5666 7887 999999999986 99 7 444444444 7888999999999999877665 454 4899
Q ss_pred ceeEEEecccCCC
Q 048589 270 KDVRVRRFVPKRA 282 (283)
Q Consensus 270 k~iWaRky~pk~~ 282 (283)
|.+-++...|+.+
T Consensus 73 r~i~V~~~~~~~~ 85 (90)
T 3p5t_L 73 QNPVVTPSNKLEH 85 (90)
T ss_dssp CCCEECCC-----
T ss_pred EEEEEEECCCCcc
Confidence 9999998887754
No 114
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.07 E-value=1.7e-05 Score=61.19 Aligned_cols=77 Identities=14% Similarity=0.229 Sum_probs=58.3
Q ss_pred CCceEEEEccCCcc--C------CHHHHHHHHHhhhCCceeeEEEeec-CCCCCceEEEEecChHHHHHHhCCCCeeeEE
Q 048589 196 TDRTLFATFSKGHP--I------TRAELFEFFTRRYGEGCVEDIKMGN-CRDQSLYARVIVRSPAFITLILGENELMQFN 266 (283)
Q Consensus 196 d~RT~FvTFS~G~P--v------se~Ei~~fFt~~~G~~cve~v~m~~-~~~qplfariVf~s~~~vd~vL~g~~~~kf~ 266 (283)
..+|+|| +|.| + ++++|+++|.+ ||. |+.|.|-+ +++..+||+|.|.+.+.....+..-+- ..
T Consensus 14 ~~~~l~V---~nLp~~~~~~~~~t~~~l~~~F~~-~G~--v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g--~~ 85 (105)
T 2nlw_A 14 IDSVIVV---DNVPQVGPDRLEKLKNVIHKIFSK-FGK--ITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADG--YK 85 (105)
T ss_dssp CCSEEEE---ESCCCCCTTTTTHHHHHHHHHHGG-GSC--EEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSS--EE
T ss_pred CCCEEEE---eCCCcchhhhhHHHHHHHHHHHhc-CCC--EEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCC--cc
Confidence 3578988 7888 5 57999999986 998 77777755 778899999999999987776653221 35
Q ss_pred EcCc-eeEEEecccC
Q 048589 267 IHGK-DVRVRRFVPK 280 (283)
Q Consensus 267 Ingk-~iWaRky~pk 280 (283)
++|+ .+-+..+.+.
T Consensus 86 ~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 86 LDKQHTFRVNLFTDF 100 (105)
T ss_dssp CSTTCEEEEECSCCC
T ss_pred cCCCceEEEEEcchH
Confidence 8898 6777665543
No 115
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.06 E-value=9.3e-06 Score=59.43 Aligned_cols=66 Identities=12% Similarity=0.196 Sum_probs=50.8
Q ss_pred CceEEEEccCCcc--C------CHHHHHHHHHhhhCCceeeEEEeec-CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589 197 DRTLFATFSKGHP--I------TRAELFEFFTRRYGEGCVEDIKMGN-CRDQSLYARVIVRSPAFITLILGENELMQFNI 267 (283)
Q Consensus 197 ~RT~FvTFS~G~P--v------se~Ei~~fFt~~~G~~cve~v~m~~-~~~qplfariVf~s~~~vd~vL~g~~~~kf~I 267 (283)
++|+|| +|.| + +++|++++|.+ ||+ |+.|.|-+ +++..+||.|.|.+++.....+..-+-. .+
T Consensus 1 ~~~l~V---~nLp~~~~~~~~~t~~~l~~~F~~-~G~--i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~--~~ 72 (81)
T 2krb_A 1 DSVIVV---DNVPQVGPDRLEKLKNVIHKIFSK-FGK--ITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGY--KL 72 (81)
T ss_dssp CCEEEE---ESCCCCCTTTHHHHHHHHHHHHHT-TCC--EEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSC--CC
T ss_pred CCEEEE---eCCCCCcHHHHHHHHHHHHHHHhh-cCC--eEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCc--cc
Confidence 368887 7888 4 56999999986 998 67777755 7888999999999999988877632211 36
Q ss_pred cCc
Q 048589 268 HGK 270 (283)
Q Consensus 268 ngk 270 (283)
+|+
T Consensus 73 ~g~ 75 (81)
T 2krb_A 73 DKQ 75 (81)
T ss_dssp SSS
T ss_pred CCc
Confidence 776
No 116
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.06 E-value=1.8e-05 Score=60.34 Aligned_cols=75 Identities=13% Similarity=0.211 Sum_probs=57.6
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIH 268 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~In 268 (283)
..+..+++|| +|.| ++++||+++|.. ||. |+.|.+.. .++...||.|.|.+.+....++..-+. ..|+
T Consensus 25 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~ 96 (107)
T 3ulh_A 25 GVETGGKLLV---SNLDFGVSDADIQELFAE-FGT--LKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNG--VPLD 96 (107)
T ss_dssp CCCCSEEEEE---ESCCTTCCHHHHHHHHHT-TSC--EEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT--CEET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCC--CEeC
Confidence 4566789988 6887 999999999996 998 66666654 667788999999999987777552111 1579
Q ss_pred CceeEEE
Q 048589 269 GKDVRVR 275 (283)
Q Consensus 269 gk~iWaR 275 (283)
|+.+-++
T Consensus 97 g~~l~V~ 103 (107)
T 3ulh_A 97 GRPMNIQ 103 (107)
T ss_dssp TEECEEE
T ss_pred CcEEEEE
Confidence 9988765
No 117
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.06 E-value=1.3e-05 Score=62.04 Aligned_cols=83 Identities=17% Similarity=0.192 Sum_probs=62.3
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCC--ceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGE--GCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIH 268 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~--~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~In 268 (283)
.++..+++|| +|.| ++++||+++|.+ ||. .|+..+.+. +++...||+|.|.+.+....++..-+. ..|+
T Consensus 21 ~~~~~~~l~V---~nLp~~~t~~~l~~~f~~-~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g--~~~~ 93 (115)
T 2cpx_A 21 PGEPNKVLYL---KNLSPRVTERDLVSLFAR-FQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNG--YKLY 93 (115)
T ss_dssp CCSCCSEEEE---ECCCTTCCHHHHHHHTHH-HHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTT--CBCS
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHH-hCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCC--CEeC
Confidence 3456789998 7888 999999999997 996 122444443 688889999999999998777642221 2469
Q ss_pred CceeEEEecccCCC
Q 048589 269 GKDVRVRRFVPKRA 282 (283)
Q Consensus 269 gk~iWaRky~pk~~ 282 (283)
|+.+-++...|++.
T Consensus 94 g~~l~v~~a~~~~~ 107 (115)
T 2cpx_A 94 GKILVIEFGKNKKQ 107 (115)
T ss_dssp SCBCEEEECCCCSC
T ss_pred CcEEEEEEccCCCC
Confidence 99998888877654
No 118
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.05 E-value=9.8e-06 Score=61.39 Aligned_cols=81 Identities=21% Similarity=0.136 Sum_probs=61.3
Q ss_pred CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589 192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNI 267 (283)
Q Consensus 192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~I 267 (283)
..+++.+|+|| +|.| ++++||+++|.+ |++ ...+.+ .++...||+|.|.+++....++..-+. ..|
T Consensus 10 ~~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~~~----~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~ 79 (102)
T 2fc8_A 10 ARSQPSKTLFV---KGLSEDTTEETLKESFDG-SVR----ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED--GEI 79 (102)
T ss_dssp SSSCCCSSEEE---ECCCTTCCHHHHHHTSTT-CSE----EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTT--CEE
T ss_pred CCCCCCCEEEE---eCCCCccCHHHHHHHhcC-CeE----EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC--CeE
Confidence 44667899998 6888 999999999994 654 222322 677889999999999998777642111 258
Q ss_pred cCceeEEEecccCCC
Q 048589 268 HGKDVRVRRFVPKRA 282 (283)
Q Consensus 268 ngk~iWaRky~pk~~ 282 (283)
+|+.+-++...|+..
T Consensus 80 ~g~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 80 DGNKVTLDWAKPKGE 94 (102)
T ss_dssp TTEECEEEECCCCCS
T ss_pred CCeEEEEEEecCCCC
Confidence 999999998888764
No 119
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.05 E-value=1.1e-05 Score=64.81 Aligned_cols=78 Identities=18% Similarity=0.188 Sum_probs=60.2
Q ss_pred CCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589 196 TDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHGK 270 (283)
Q Consensus 196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk 270 (283)
..+|+|| +|.| ++++||+++|.+ ||+ |++|.+-. .++...||.|.|.+++.....+...+. ..++|+
T Consensus 2 ~~~~l~v---~nlp~~~~~~~l~~~f~~-~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~--~~~~g~ 73 (168)
T 1b7f_A 2 SNTNLIV---NYLPQDMTDRELYALFRA-IGP--INTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNG--ITVRNK 73 (168)
T ss_dssp CCSEEEE---ECCCTTCCHHHHHHHHHT-TSC--EEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT--CEETTE
T ss_pred CccEEEE---eCCCCCCCHHHHHHHHHh-cCC--eeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCC--CEeCCc
Confidence 3589988 7988 999999999986 999 66666543 577889999999999998877642111 157999
Q ss_pred eeEEEecccCC
Q 048589 271 DVRVRRFVPKR 281 (283)
Q Consensus 271 ~iWaRky~pk~ 281 (283)
.+-++...|+.
T Consensus 74 ~l~v~~~~~~~ 84 (168)
T 1b7f_A 74 RLKVSYARPGG 84 (168)
T ss_dssp ECEEEECCCCS
T ss_pred EEEEEecCCCc
Confidence 99887666554
No 120
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.03 E-value=3.3e-05 Score=58.45 Aligned_cols=80 Identities=19% Similarity=0.189 Sum_probs=60.1
Q ss_pred CCCCceEEEEccCCcc--CCHHHHH----HHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELF----EFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNI 267 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~----~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~I 267 (283)
..+..++|| +|.| ++++|++ ++|.+ ||+ |++|.|-.......||+|.|.+.+.....+...+. ..+
T Consensus 6 ~~~~~~l~V---~nL~~~~~~~~l~~~l~~~F~~-~G~--v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g--~~~ 77 (96)
T 2dgx_A 6 SGNGADVQV---SNIDYRLSRKELQQLLQEAFAR-HGK--VKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHR--YKI 77 (96)
T ss_dssp CSSCEEEEE---ESCCTTSCHHHHHHHHHHHHHH-HSC--EEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTT--EEE
T ss_pred CCCCCEEEE---ECCCCCCCHHHHHHHHHHhccc-cCc--EEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCC--CEE
Confidence 456678888 7888 9999999 99996 998 77777754111167999999999987777552221 258
Q ss_pred cCceeEEEecccCC
Q 048589 268 HGKDVRVRRFVPKR 281 (283)
Q Consensus 268 ngk~iWaRky~pk~ 281 (283)
+||.+-++...|+.
T Consensus 78 ~gr~l~V~~a~~~~ 91 (96)
T 2dgx_A 78 GSKKILVSLATGAS 91 (96)
T ss_dssp TTEEEEEEECCCSS
T ss_pred CCeEEEEEEcCCCC
Confidence 99999888777654
No 121
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.02 E-value=1.1e-05 Score=59.14 Aligned_cols=59 Identities=19% Similarity=0.229 Sum_probs=49.4
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhC
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILG 258 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~ 258 (283)
+...+++|| +|.| ++++||+++|.+ ||+ |+++.|.. +++...||.|.|.+.+....++.
T Consensus 2 ~~~~~~l~v---~nlp~~~t~~~l~~~f~~-~G~--i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (85)
T 1x4e_A 2 SSGSSGLYI---RGLQPGTTDQDLVKLCQP-YGK--IVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT 65 (85)
T ss_dssp CCCCCEEEE---ESCCTTCCHHHHHTTSTT-TSC--EEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHH
T ss_pred CCCCcEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 556789998 7888 999999999996 998 77776654 57888999999999998777665
No 122
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.02 E-value=2e-05 Score=67.44 Aligned_cols=78 Identities=26% Similarity=0.273 Sum_probs=57.7
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEe-ec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKM-GN--CRDQSLYARVIVRSPAFITLILGENELMQFNIH 268 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m-~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~In 268 (283)
+...+|||| +|.| ++|+||+++|.+ ||+ |++|.+ .+ +++..+||.|.|.+++.....+...+. ..++
T Consensus 12 ~~p~~tlfV---gnLp~~~te~~L~~~F~~-~G~--I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~--~~~~ 83 (213)
T 4f02_A 12 SYPMASLYV---GDLHPDVTEAMLYEKFSP-AGP--ILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNF--DVIK 83 (213)
T ss_dssp ---CCEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT--CEET
T ss_pred CCCCcEEEE---eCCCCCCCHHHHHHHHHh-hCC--EEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhh--hhcC
Confidence 445689998 8988 999999999986 999 555554 33 688899999999999998877642111 1578
Q ss_pred CceeEEEeccc
Q 048589 269 GKDVRVRRFVP 279 (283)
Q Consensus 269 gk~iWaRky~p 279 (283)
||.+.+....+
T Consensus 84 g~~i~~~~~~~ 94 (213)
T 4f02_A 84 GKPVRIMWSQR 94 (213)
T ss_dssp TEECEEEECCC
T ss_pred Ccccccccccc
Confidence 88887765443
No 123
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.01 E-value=7e-06 Score=65.73 Aligned_cols=76 Identities=16% Similarity=0.196 Sum_probs=60.5
Q ss_pred CCCCCCceEEEEccCCccCCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHh---CCCCeeeEEEc
Q 048589 192 NDADTDRTLFATFSKGHPITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLIL---GENELMQFNIH 268 (283)
Q Consensus 192 ~~~~d~RT~FvTFS~G~Pvse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL---~g~~~~kf~In 268 (283)
..+.+.+|+|| +|+.++++||+++|.+ ||+ |+.|.|. +...||+|.|.+.+.....+ +|. .|+
T Consensus 34 ~~~~~~~~lfV---gnl~~te~~L~~~F~~-~G~--I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~lng~-----~~~ 99 (121)
T 2bz2_A 34 RAPRKGNTLYV---YGEDMTPTLLRGAFSP-FGN--IIDLSMD---PPRNCAFVTYEKMESADQAVAELNGT-----QVE 99 (121)
T ss_dssp -CCCCCCEEEE---ECSSCCHHHHHHHHST-TCC--CSCEEEE---TTTTEEEEECSSHHHHHHHHHHHTTC-----BCS
T ss_pred CCCCCCCEEEE---cCCCCCHHHHHHHHHc-cCC--EEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCC-----EEC
Confidence 44567899999 4789999999999986 998 6777773 56789999999999877766 453 469
Q ss_pred CceeEEEecccCC
Q 048589 269 GKDVRVRRFVPKR 281 (283)
Q Consensus 269 gk~iWaRky~pk~ 281 (283)
|+.+-+....|++
T Consensus 100 g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 100 SVQLKVNIARKQP 112 (121)
T ss_dssp SCBCEEEECCSSC
T ss_pred CeEEEEEEeCCCC
Confidence 9999887776654
No 124
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.01 E-value=7.1e-06 Score=64.94 Aligned_cols=79 Identities=15% Similarity=0.098 Sum_probs=61.1
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCC-ceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGE-GCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNI 267 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~-~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~I 267 (283)
.+.+.+|+|| +|.| +|++||++||.. ||. +.|+.|.|-. .++...||.|.|.+++.....|. .+. ..|
T Consensus 13 ~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g--~~~ 85 (118)
T 2db1_A 13 EGGEGYVVKL---RGLPWSCSIEDVQNFLSD-CTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDR--ESM 85 (118)
T ss_dssp CBCCCCEEEE---ESCCTTCCHHHHHHHTTT-SCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTT--EEE
T ss_pred CCCCCcEEEE---eCCCCCCCHHHHHHHHHH-cCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCC--CeE
Confidence 3556788988 7988 999999999997 885 1255665543 57788999999999999998887 332 468
Q ss_pred cCceeEEEecc
Q 048589 268 HGKDVRVRRFV 278 (283)
Q Consensus 268 ngk~iWaRky~ 278 (283)
+|+.+-+..-.
T Consensus 86 ~gr~i~V~~a~ 96 (118)
T 2db1_A 86 GHRYIEVFKSH 96 (118)
T ss_dssp TTEEEEEEEEC
T ss_pred CCeEEEEEECC
Confidence 99988776543
No 125
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.01 E-value=7.5e-06 Score=62.75 Aligned_cols=75 Identities=13% Similarity=0.184 Sum_probs=59.4
Q ss_pred CCceEEEEccCCccC--------CHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHh---CCCC
Q 048589 196 TDRTLFATFSKGHPI--------TRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLIL---GENE 261 (283)
Q Consensus 196 d~RT~FvTFS~G~Pv--------se~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL---~g~~ 261 (283)
.++|+|| +|.|. ++++|+++|.+ ||+ |++|.|-. +++..+||+|.|.+++.....+ +|.
T Consensus 5 ~~~~vfV---~nLp~v~~~~~~~~~~~L~~~F~~-~G~--i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~- 77 (100)
T 3ns6_A 5 SDQYIVV---NGAPVIPSAKVPVLKKALTSLFSK-AGK--VVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGK- 77 (100)
T ss_dssp GGGEEEE---ESCCCCBGGGHHHHHHHHHHHHHT-TSC--EEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC-
T ss_pred cCcEEEE---eCCCcCChHHHHHHHHHHHHHHHh-cCC--EeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCc-
Confidence 3678988 78775 78999999996 998 66776653 5888999999999988866654 564
Q ss_pred eeeEEEcC-ceeEEEecccCC
Q 048589 262 LMQFNIHG-KDVRVRRFVPKR 281 (283)
Q Consensus 262 ~~kf~Ing-k~iWaRky~pk~ 281 (283)
.++| +.+-++...|+.
T Consensus 78 ----~~~g~r~l~V~~a~~~~ 94 (100)
T 3ns6_A 78 ----RLDLKHRLFLYTMKDVE 94 (100)
T ss_dssp ----BSSSSCBCEEEESHHHH
T ss_pred ----ccCCCeEEEEEECchhh
Confidence 4788 999888877753
No 126
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.01 E-value=6.9e-06 Score=62.25 Aligned_cols=76 Identities=16% Similarity=0.194 Sum_probs=57.3
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGK 270 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk 270 (283)
.+.+.+|+|| +|.| ++++||+++|.+ ||. |+++.|. +...||+|.|.+.+.....+..-+ ...++|+
T Consensus 23 ~~~~~~~l~V---~nlp~~~~~~~l~~~f~~-~G~--i~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~--g~~~~g~ 91 (101)
T 2la4_A 23 APPRVTTAYI---GNIPHFATEADLIPLFQN-FGF--ILDFKHY---PEKGCCFIKYDTHEQAAVCIVALA--NFPFQGR 91 (101)
T ss_dssp SCSSCCEEEE---ESCCTTCCHHHHHHHHHT-TSC--CSEEEEE---TTTTEEEEECSSHHHHHHHHHHHT--TCEETTE
T ss_pred CCCCCCEEEE---cCCCcccCHHHHHHHHHh-CCC--EEEEEEe---cCCCEEEEEECCHHHHHHHHHHhC--CCeECCe
Confidence 3456789998 7887 999999999986 998 7788874 467899999999998776664211 1257899
Q ss_pred eeEEEeccc
Q 048589 271 DVRVRRFVP 279 (283)
Q Consensus 271 ~iWaRky~p 279 (283)
.+-++...|
T Consensus 92 ~l~V~~a~~ 100 (101)
T 2la4_A 92 NLRTGWGKE 100 (101)
T ss_dssp ECCCCBCCC
T ss_pred EEEEEeccC
Confidence 886555444
No 127
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.01 E-value=9.4e-06 Score=62.90 Aligned_cols=80 Identities=13% Similarity=0.157 Sum_probs=61.6
Q ss_pred CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEe-ec-CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589 192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKM-GN-CRDQSLYARVIVRSPAFITLILGENELMQFNI 267 (283)
Q Consensus 192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m-~~-~~~qplfariVf~s~~~vd~vL~g~~~~kf~I 267 (283)
..+.+.+++|| +|.| ++++||++||.. ||. . .|.| .+ .++...||.|.|.+++.....|.- + ...|
T Consensus 10 ~~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~-~--~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~--~~~~ 79 (102)
T 1wez_A 10 FQSTTGHCVHM---RGLPYRATENDIYNFFSP-LNP-M--RVHIEIGPDGRVTGEADVEFATHEDAVAAMAK-D--KANM 79 (102)
T ss_dssp CCCSSSCEEEE---ESCCTTCCHHHHHHSSCS-CCC-S--EEEEEESSSSCEEEEEEEECSSSHHHHHHHTT-S--SCCS
T ss_pred CCCCCCCEEEE---eCCCCCCCHHHHHHHHHH-cCc-e--EEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-C--CCeE
Confidence 34667789988 7888 999999999996 996 3 3333 33 778889999999999998888852 2 2368
Q ss_pred cCceeEEEecccCC
Q 048589 268 HGKDVRVRRFVPKR 281 (283)
Q Consensus 268 ngk~iWaRky~pk~ 281 (283)
+||.|-+..-.++.
T Consensus 80 ~gr~i~V~~~~~~~ 93 (102)
T 1wez_A 80 QHRYVELFLNSTAG 93 (102)
T ss_dssp SSSCCEEEEECCCC
T ss_pred CCcEEEEEECCCCC
Confidence 99988877665544
No 128
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.01 E-value=2.2e-05 Score=62.63 Aligned_cols=77 Identities=19% Similarity=0.235 Sum_probs=59.5
Q ss_pred CceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCce
Q 048589 197 DRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKD 271 (283)
Q Consensus 197 ~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~ 271 (283)
.||+|| +|.| ++++||+++|.+ ||+ |+++.+-. .+++..||.|.|.+++.....+..-+. ..++|+.
T Consensus 2 ~~~l~v---~nlp~~~~~~~l~~~f~~-~G~--i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~--~~~~g~~ 73 (167)
T 1fxl_A 2 KTNLIV---NYLPQNMTQEEFRSLFGS-IGE--IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG--LRLQTKT 73 (167)
T ss_dssp CSEEEE---ESCCTTCCHHHHHHHHHT-TSC--EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT--CEETTEE
T ss_pred cceEEE---cCCCCCCCHHHHHHHHHh-cCC--eEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCC--CccCCce
Confidence 478988 7888 999999999996 998 66666654 677789999999999998887642111 2578999
Q ss_pred eEEEecccCC
Q 048589 272 VRVRRFVPKR 281 (283)
Q Consensus 272 iWaRky~pk~ 281 (283)
+-++...|+.
T Consensus 74 l~v~~~~~~~ 83 (167)
T 1fxl_A 74 IKVSYARPSS 83 (167)
T ss_dssp CEEEECCCCC
T ss_pred EEEEecCCCc
Confidence 8887666543
No 129
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.00 E-value=2.6e-05 Score=56.97 Aligned_cols=71 Identities=20% Similarity=0.347 Sum_probs=55.0
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCC-CeeeEEEcCc
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGEN-ELMQFNIHGK 270 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~-~~~kf~Ingk 270 (283)
+...+|+|| +|.| ++++||+++|.+ ||+ |+.+.+-. ...||.|.|.+.+.....+..- + ...++|+
T Consensus 9 ~~~~~~l~V---~~l~~~~t~~~l~~~f~~-~G~--i~~~~~~~---~kg~afV~f~~~~~A~~a~~~l~~--~~~~~g~ 77 (85)
T 2ytc_A 9 DKTITTLYV---GGLGDTITETDLRNHFYQ-FGE--IRTITVVQ---RQQCAFIQFATRQAAEVAAEKSFN--KLIVNGR 77 (85)
T ss_dssp CSSCCCEEE---ECCTTTSCHHHHHHHHHT-TSC--EEEEEEEG---GGTEEEEEESSHHHHHHHHHTTTT--TCEETTE
T ss_pred CCCccEEEE---cCCCCCCCHHHHHHHHHh-CCC--EeEEEEEC---CCCEEEEEECCHHHHHHHHHHhcC--CeeECCC
Confidence 456689988 6887 999999999986 998 77787754 3679999999999988877532 1 1268888
Q ss_pred eeEEE
Q 048589 271 DVRVR 275 (283)
Q Consensus 271 ~iWaR 275 (283)
.+-++
T Consensus 78 ~l~v~ 82 (85)
T 2ytc_A 78 RLNVK 82 (85)
T ss_dssp ECCEE
T ss_pred EEEEE
Confidence 77443
No 130
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.00 E-value=9.4e-06 Score=62.79 Aligned_cols=77 Identities=16% Similarity=0.197 Sum_probs=58.8
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c--CCCCCceEEEEecChHHHHHHhC---CCCeeeE
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N--CRDQSLYARVIVRSPAFITLILG---ENELMQF 265 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~--~~~qplfariVf~s~~~vd~vL~---g~~~~kf 265 (283)
.++-.|+|| +|.| +|+++|+++|.+ ||.--+.+|.+- + +++..+||+|.|.+++....++. |. .-.+
T Consensus 6 ~~~m~tlfV---~nL~~~~tee~L~~~F~~-~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~-~~~~ 80 (95)
T 2lkz_A 6 HHHMDTIIL---RNIAPHTVVDSIMTALSP-YASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSL-HPPL 80 (95)
T ss_dssp SCCCCEEEE---ESCCTTCCHHHHHHHSTT-TCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSS-SSCE
T ss_pred CCccCEEEE---eCCCCcCCHHHHHHHHHh-hCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCC-CCCc
Confidence 345568988 9999 999999999986 995114455543 3 68889999999999988777664 43 2468
Q ss_pred EEcCceeEEE
Q 048589 266 NIHGKDVRVR 275 (283)
Q Consensus 266 ~Ingk~iWaR 275 (283)
.|+||.+-+.
T Consensus 81 ~i~Gr~i~V~ 90 (95)
T 2lkz_A 81 KIDGKTIGVD 90 (95)
T ss_dssp EETTEEEEEE
T ss_pred eECCEEEEEE
Confidence 9999999654
No 131
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.99 E-value=1e-05 Score=63.02 Aligned_cols=80 Identities=15% Similarity=0.238 Sum_probs=61.5
Q ss_pred CCCceEEEEccCCcc--CCHHHHH---HHHHhhhCCceeeEEEeec-C-----CCCCceEEEEecChHHHHHHhCCCCee
Q 048589 195 DTDRTLFATFSKGHP--ITRAELF---EFFTRRYGEGCVEDIKMGN-C-----RDQSLYARVIVRSPAFITLILGENELM 263 (283)
Q Consensus 195 ~d~RT~FvTFS~G~P--vse~Ei~---~fFt~~~G~~cve~v~m~~-~-----~~qplfariVf~s~~~vd~vL~g~~~~ 263 (283)
...+++|| +|.| ++++|++ ++|.+ ||+ |+.|.|.. . ++...||.|.|.+++.....+..-+-
T Consensus 13 ~~~~~l~V---~nLp~~~~~~~l~~~~~~F~~-~G~--i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng- 85 (111)
T 2cpi_A 13 VQKNLVFV---VGLSQRLADPEVLKRPEYFGK-FGK--IHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNN- 85 (111)
T ss_dssp CCSSCEEE---EEECTTTCCHHHHHSTTTTTT-TSC--EEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTT-
T ss_pred cCCCEEEE---ECCCCCCCHHHHHHHHHHhhc-cCC--EEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCC-
Confidence 34678988 7888 9999999 99996 999 66666654 2 24558999999999988777664221
Q ss_pred eEEEcCceeEEEecccCCC
Q 048589 264 QFNIHGKDVRVRRFVPKRA 282 (283)
Q Consensus 264 kf~Ingk~iWaRky~pk~~ 282 (283)
..|+|+.+-+....||..
T Consensus 86 -~~~~gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 86 -VVVDGRTLKASLGTTKYC 103 (111)
T ss_dssp -EEETTEEEEEESCCCCSC
T ss_pred -CEECCEEEEEEecccccc
Confidence 258999999988888764
No 132
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=97.99 E-value=1.7e-05 Score=65.91 Aligned_cols=80 Identities=20% Similarity=0.170 Sum_probs=60.4
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIH 268 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~In 268 (283)
..+.+|||| +|.| +++++|+++|.+ ||+ |+.|.|.. ++....||+|.|.+.+....++..-+. ..|+
T Consensus 69 ~~~~~~l~V---~nLp~~~t~~~L~~~F~~-~G~--i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~ 140 (165)
T 1rk8_A 69 SVEGWILFV---TSIHEEAQEDEIQEKFCD-YGE--IKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG--AEIM 140 (165)
T ss_dssp CC-CEEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTT--CEET
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHhhc-CCC--EEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCC--CEEC
Confidence 345678988 6888 999999999986 998 66666653 677889999999999987776642111 2579
Q ss_pred CceeEEEecccCC
Q 048589 269 GKDVRVRRFVPKR 281 (283)
Q Consensus 269 gk~iWaRky~pk~ 281 (283)
|+.+-+....|+.
T Consensus 141 g~~l~V~~a~~~~ 153 (165)
T 1rk8_A 141 GQTIQVDWCFVKG 153 (165)
T ss_dssp TEECEEEESEECC
T ss_pred CEEEEEEEecCCC
Confidence 9999777666554
No 133
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.97 E-value=3.5e-05 Score=57.69 Aligned_cols=77 Identities=17% Similarity=0.189 Sum_probs=57.9
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEE-EeecCCCCCceEEEEecChHHHHHHh---CCCCeeeEEE
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDI-KMGNCRDQSLYARVIVRSPAFITLIL---GENELMQFNI 267 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v-~m~~~~~qplfariVf~s~~~vd~vL---~g~~~~kf~I 267 (283)
+...+++|| +|.| ++++||+++|.+ ||+ |+.+ .+.. ......|+|.|.+.+.....+ +|. .|
T Consensus 12 ~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--v~~~~~i~~-~~~~~~afV~f~~~~~a~~Ai~~l~g~-----~~ 79 (96)
T 2e44_A 12 RQRIRKLQI---RNIPPHLQWEVLDSLLVQ-YGV--VESCEQVNT-DSETAVVNVTYSSKDQARQALDKLNGF-----QL 79 (96)
T ss_dssp CCSCCCEEE---EEECSSSCHHHHHHHHHH-HSC--EEEEEEECC-SSSSEEEEEEESSHHHHHHHHHHHTTC-----BC
T ss_pred CCCCCEEEE---EcCCCCCCHHHHHHHHHh-cCC--eEEEEEeec-CCCCCEEEEEECCHHHHHHHHHHhCCC-----EE
Confidence 445689988 7877 999999999996 998 6666 3332 112223999999999877665 453 47
Q ss_pred cCceeEEEecccCCC
Q 048589 268 HGKDVRVRRFVPKRA 282 (283)
Q Consensus 268 ngk~iWaRky~pk~~ 282 (283)
+|+.+-+....|+..
T Consensus 80 ~g~~l~V~~a~~~~~ 94 (96)
T 2e44_A 80 ENFTLKVAYIPDEMA 94 (96)
T ss_dssp SSCBCEEEECCCCCS
T ss_pred CCcEEEEEEcCcccc
Confidence 999999999988864
No 134
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.96 E-value=7.6e-06 Score=66.56 Aligned_cols=80 Identities=13% Similarity=0.154 Sum_probs=60.1
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCce
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKD 271 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~ 271 (283)
.+..+++|| ++.| ++|+||+++|.+ ||. |++|.|-. ...||+|.|.+++.....+...+.-...|+||.
T Consensus 28 ~~ps~~LfV---gNLp~~vte~dL~~lF~~-fG~--V~~v~i~~---~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~ 98 (119)
T 2ad9_A 28 GVPSRVIHI---RKLPIDVTEGEVISLGLP-FGK--VTNLLMLK---GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 98 (119)
T ss_dssp SSCCSEEEE---ESCCTTCCHHHHHHHHTT-TSC--CCEEEEEG---GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBC
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--EEEEEEeC---CCCEEEEEECCHHHHHHHHHHhccCCceECCeE
Confidence 345689998 7888 999999999996 998 66666643 268999999999887777652221124689999
Q ss_pred eEEEecccCCC
Q 048589 272 VRVRRFVPKRA 282 (283)
Q Consensus 272 iWaRky~pk~~ 282 (283)
+-+....+|+.
T Consensus 99 l~V~~a~~k~~ 109 (119)
T 2ad9_A 99 IYIQFSNHKEL 109 (119)
T ss_dssp CEEEECSSSSC
T ss_pred EEEEEccCCCC
Confidence 98887766653
No 135
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.96 E-value=8.4e-06 Score=66.16 Aligned_cols=77 Identities=16% Similarity=0.113 Sum_probs=59.8
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCce---eeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEE
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGC---VEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFN 266 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~c---ve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~ 266 (283)
.++.+++|| +|.| +|++||++||.. ||. . |++|.|-. .++...||+|.|.+++.....|.- +. -.
T Consensus 20 ~~~~~~v~V---~nLp~~~te~dl~~~F~~-~g~-v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~--~~ 91 (123)
T 2dha_A 20 KENQVIVRM---RGLPFTATAEEVVAFFGQ-HCP-ITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HK--DL 91 (123)
T ss_dssp CCSCCEEEE---CSCCTTCCHHHHHHHHHT-TSC-CTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TT--EE
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-hCC-ccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CC--Ce
Confidence 456678887 8999 999999999997 997 4 35565543 788899999999999999988874 22 36
Q ss_pred EcCceeEEEecc
Q 048589 267 IHGKDVRVRRFV 278 (283)
Q Consensus 267 Ingk~iWaRky~ 278 (283)
++|+.|-+.+-.
T Consensus 92 l~gR~i~V~~a~ 103 (123)
T 2dha_A 92 LGKRYIELFRST 103 (123)
T ss_dssp SSSCEECCEEEC
T ss_pred eCCeEEEEEECC
Confidence 888877665443
No 136
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=97.96 E-value=3.8e-05 Score=59.24 Aligned_cols=75 Identities=12% Similarity=0.178 Sum_probs=57.8
Q ss_pred CCCCCceEEEEccCCcc---CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589 193 DADTDRTLFATFSKGHP---ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHG 269 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P---vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing 269 (283)
.....+++|| +|.| ++++||+++|.+ ||+ |+.|.| ...||+|.|.+.+....++..-+. ..|+|
T Consensus 23 ~~~~~~~l~V---~nl~~~~~t~~~l~~~F~~-~G~--v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g--~~~~g 89 (110)
T 1wf1_A 23 PKSINSRVFI---GNLNTALVKKSDVETIFSK-YGR--VAGCSV-----HKGYAFVQYSNERHARAAVLGENG--RVLAG 89 (110)
T ss_dssp CTTCSSEEEE---CSCCCSSCCHHHHHHHHGG-GSC--CSEEEE-----ETTEEEEECSSSHHHHHHHHHHTT--CEETT
T ss_pred CCCCCcEEEE---eCCCcccCCHHHHHHHHHh-CCC--eEEEEE-----eCCEEEEEECCHHHHHHHHHHcCC--CEECC
Confidence 3445689998 7877 799999999986 998 778888 357999999999988777742111 25799
Q ss_pred ceeEEEecccC
Q 048589 270 KDVRVRRFVPK 280 (283)
Q Consensus 270 k~iWaRky~pk 280 (283)
+.+-++...++
T Consensus 90 ~~l~V~~a~~~ 100 (110)
T 1wf1_A 90 QTLDINMAGEP 100 (110)
T ss_dssp EECCEEESCCC
T ss_pred eEEEEEECCCC
Confidence 99988776643
No 137
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=97.95 E-value=2e-05 Score=64.00 Aligned_cols=77 Identities=17% Similarity=0.200 Sum_probs=61.6
Q ss_pred CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHh---CCCCeeeEE
Q 048589 192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLIL---GENELMQFN 266 (283)
Q Consensus 192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL---~g~~~~kf~ 266 (283)
..+...+++|| +|.| ++++||+++|.+ ||+ |+.|.+.. .+..||+|.|.+.+.....+ +|. .
T Consensus 68 ~~~~~~~~l~V---~nl~~~~t~~~l~~~F~~-~G~--i~~v~i~~--~~~g~afV~f~~~~~a~~A~~~l~g~-----~ 134 (150)
T 2i2y_A 68 DSCPLDCKVYV---GNLGNNGNKTELERAFGY-YGP--LRSVWVAR--NPPGFAFVEFEDPRDAADAVRELDGR-----T 134 (150)
T ss_dssp SSSTTSCEEEE---ESCCSCCSCHHHHHHHHH-HSC--EEEEEECS--SSCSEEEEEESSHHHHHHHHHHHSSS-----C
T ss_pred cCCCCCCEEEE---eCCCCCCCHHHHHHHHHh-hCC--EEEEEEee--CCCcEEEEEECCHHHHHHHHHHcCCC-----E
Confidence 34556789998 7887 999999999997 999 67777743 36789999999999877765 453 3
Q ss_pred EcCceeEEEecccCC
Q 048589 267 IHGKDVRVRRFVPKR 281 (283)
Q Consensus 267 Ingk~iWaRky~pk~ 281 (283)
|+|+.+-++...|++
T Consensus 135 ~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 135 LCGCRVRVELSNGEK 149 (150)
T ss_dssp SSSSCCEEEECCCCC
T ss_pred ECCeEEEEEEcCCCC
Confidence 799999988877765
No 138
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=97.95 E-value=5.8e-06 Score=64.00 Aligned_cols=79 Identities=16% Similarity=0.112 Sum_probs=61.0
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCce--eeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEE
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGC--VEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFN 266 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~c--ve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~ 266 (283)
.+.+.+++|| +|.| +|++||++||.. ||. . |+.|.+-. .++..+||+|.|.+.+.....|. .+. ..
T Consensus 7 ~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~g~-~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~--~~ 78 (107)
T 2lmi_A 7 EVDDVFLIRA---QGLPWSCTMEDVLNFFSD-CRI-RNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHR--MY 78 (107)
T ss_dssp CCSSCCEEEE---ECCCSSCCSHHHHHHTTT-SCB-TTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTT--CC
T ss_pred CCCCccEEEE---eCCCCCCCHHHHHHHHHh-cCC-cCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCc--ce
Confidence 3556778887 8888 999999999996 774 3 66676654 57889999999999999888887 332 24
Q ss_pred EcCceeEEEeccc
Q 048589 267 IHGKDVRVRRFVP 279 (283)
Q Consensus 267 Ingk~iWaRky~p 279 (283)
|+|+.+-+....|
T Consensus 79 ~~gr~i~V~~a~~ 91 (107)
T 2lmi_A 79 MGQRYVEVYEINN 91 (107)
T ss_dssp SSSSCCCCEECCH
T ss_pred eCCeEEEEEECCH
Confidence 7899887766544
No 139
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=97.92 E-value=3.3e-05 Score=63.72 Aligned_cols=82 Identities=16% Similarity=0.189 Sum_probs=64.4
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNI 267 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~I 267 (283)
.+...+++|| +|.| ++++||+++|.+ ||+ |+.+.+.. .+....||.|.|.+.+....++..-+. ..|
T Consensus 110 ~~~~~~~l~v---~nl~~~~~~~~l~~~f~~-~G~--v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~ 181 (198)
T 2yh0_A 110 VPDSAHKLFI---GGLPNYLNDDQVKELLTS-FGP--LKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG--MQL 181 (198)
T ss_dssp SSCCCCEEEE---ECCCTTCCHHHHHHHHHT-BSC--EEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTT--CEE
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHH-cCC--ccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCC--CEE
Confidence 4567799988 6888 999999999996 998 66666653 577789999999999887766542111 257
Q ss_pred cCceeEEEecccCCC
Q 048589 268 HGKDVRVRRFVPKRA 282 (283)
Q Consensus 268 ngk~iWaRky~pk~~ 282 (283)
+|+.+-++...|+..
T Consensus 182 ~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 182 GDKKLLVQRASVGAK 196 (198)
T ss_dssp TTEECEEEESCCCCC
T ss_pred CCEEEEEEECCCCCC
Confidence 999999999888764
No 140
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=97.91 E-value=1.5e-05 Score=65.72 Aligned_cols=79 Identities=13% Similarity=0.068 Sum_probs=62.1
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCce--eeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEE
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGC--VEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFN 266 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~c--ve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~ 266 (283)
.+++.+++|| +|.| +|++||++||.+ ||. . |++|.+-. .++...||.|.|.+++..+..|. .+. ..
T Consensus 40 ~~~~~~~lfV---gnLp~~~te~dL~~~F~~-~G~-v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g--~~ 111 (136)
T 2hgl_A 40 EGGEGFVVKL---RGLPWSCSVEDVQNFLSD-CTI-HDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDR--ES 111 (136)
T ss_dssp SCCTTCEEEE---ESCCTTCCHHHHHHHTTT-CCC-SSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTE--EE
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHH-hCC-cCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCC--CE
Confidence 3556788887 8988 999999999997 996 4 56666543 57788999999999999998887 442 46
Q ss_pred EcCceeEEEeccc
Q 048589 267 IHGKDVRVRRFVP 279 (283)
Q Consensus 267 Ingk~iWaRky~p 279 (283)
|+||.+-+..-.|
T Consensus 112 l~gr~i~V~~a~~ 124 (136)
T 2hgl_A 112 MGHRYIEVFKSHR 124 (136)
T ss_dssp SSSSEEEEEECCH
T ss_pred ECCEEEEEEECCh
Confidence 8999887765443
No 141
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=97.91 E-value=2.5e-05 Score=67.18 Aligned_cols=71 Identities=18% Similarity=0.249 Sum_probs=59.0
Q ss_pred CCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCce
Q 048589 196 TDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIHGKD 271 (283)
Q Consensus 196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~ 271 (283)
+.||+|| +|.| +++++|+++|.+ ||. |..|.|.. .++..+||+|.|.+++....++..... .++|+.
T Consensus 108 ~~~~l~V---~nLp~~~t~~~L~~~F~~-~G~--v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~---~~~Gr~ 178 (193)
T 2voo_A 108 KNRSVYI---KGFPTDATLDDIKEWLED-KGQ--VLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQ---KYKETD 178 (193)
T ss_dssp HHTEEEE---ECCCTTCCHHHHHHHHTT-SCC--EEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTC---EETTEE
T ss_pred ccCEEEe---cCCCCcCCHHHHHHHHhc-CCC--EEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCC---eECCEE
Confidence 3589988 8888 999999999996 998 77787765 577789999999999999999875442 799999
Q ss_pred eEEE
Q 048589 272 VRVR 275 (283)
Q Consensus 272 iWaR 275 (283)
+-++
T Consensus 179 l~V~ 182 (193)
T 2voo_A 179 LLIL 182 (193)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 8443
No 142
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=97.90 E-value=9.4e-05 Score=56.37 Aligned_cols=78 Identities=15% Similarity=0.327 Sum_probs=59.1
Q ss_pred CCCCCCCceEEEEccCCcc---CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589 191 ANDADTDRTLFATFSKGHP---ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNI 267 (283)
Q Consensus 191 ~~~~~d~RT~FvTFS~G~P---vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~I 267 (283)
...+.+.+++|| +|.| ++++|++++|.+ ||+ |+.|.|. ..||.|.|.+.+....++...+. ..+
T Consensus 16 ~~~~~~~~~l~V---~nLp~~~~t~~~L~~~F~~-~G~--v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g--~~~ 82 (97)
T 2xnq_A 16 PRGSHMKSRLFI---GNLPLKNVSKEDLFRIFSP-YGH--IMQINIK-----NAFGFIQFDNPQSVRDAIEXESQ--EMN 82 (97)
T ss_dssp ---CCTTCEEEE---ESCCSSCCCHHHHHHHHGG-GSC--EEEEEEC-----SSEEEEEESSHHHHHHHHHHHTT--SEE
T ss_pred cCCCCCCCEEEE---eCCCcccCCHHHHHHHHHh-cCC--EEEEEEe-----CCEEEEEECCHHHHHHHHHHcCC--CEE
Confidence 345667899999 6776 699999999997 998 8888882 67999999999987777652111 257
Q ss_pred cCceeEEEecccCC
Q 048589 268 HGKDVRVRRFVPKR 281 (283)
Q Consensus 268 ngk~iWaRky~pk~ 281 (283)
+|+.+-++...++.
T Consensus 83 ~g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 83 FGKKLILEVSSSNA 96 (97)
T ss_dssp TTEECEEEECCCCC
T ss_pred CCEEEEEEecCCCC
Confidence 89999887766553
No 143
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=97.88 E-value=1.8e-05 Score=64.64 Aligned_cols=79 Identities=23% Similarity=0.249 Sum_probs=61.1
Q ss_pred CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceee-EEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEE
Q 048589 192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVE-DIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFN 266 (283)
Q Consensus 192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve-~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~ 266 (283)
..+++.+++|| +|.| +|++||++||.. | . .++ +|.|-. .++..+||.|.|.+++..+..|.-.. -.
T Consensus 37 ~~~~~~~~lfV---gnLp~~~te~dL~~~F~~-~-~-i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~---~~ 107 (126)
T 2hgm_A 37 ADSANDGFVRL---RGLPFGCTKEEIVQFFSG-L-E-IVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHK---ER 107 (126)
T ss_dssp TCSSSCCEEEE---ECCCTTCCHHHHHHHTTT-S-C-EEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTT---CC
T ss_pred CCCCCCCEEEE---eCCCCCCCHHHHHHHHhc-C-C-ceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCC---CE
Confidence 45667888888 8998 999999999997 6 4 342 666643 57889999999999999998887422 36
Q ss_pred EcCceeEEEeccc
Q 048589 267 IHGKDVRVRRFVP 279 (283)
Q Consensus 267 Ingk~iWaRky~p 279 (283)
|+||.|-+.+-.|
T Consensus 108 l~gR~I~V~~a~~ 120 (126)
T 2hgm_A 108 IGHRYIEVFKSSQ 120 (126)
T ss_dssp BTTBCCCCEEECH
T ss_pred ECCEEEEEEECCH
Confidence 8999887665443
No 144
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=97.88 E-value=1.5e-05 Score=59.41 Aligned_cols=76 Identities=14% Similarity=0.098 Sum_probs=55.0
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIHG 269 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing 269 (283)
++..+++|| +|.| ++++||+++|.+ ||. ..+...+.+ .++...||.|.|.+++.....+...+. ..|+|
T Consensus 12 ~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g--~~~~g 84 (95)
T 2ek1_A 12 KPGPTVIKV---QNMPFTVSIDEILDFFYG-YQV-IPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLND--RPIGS 84 (95)
T ss_dssp ---CEEEEE---ECCCTTCCHHHHHHHTTT-SCB-CTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT--CEETT
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-ccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCC--CeECC
Confidence 344588988 7888 999999999986 997 443344443 677889999999999987777652111 25789
Q ss_pred ceeEEEe
Q 048589 270 KDVRVRR 276 (283)
Q Consensus 270 k~iWaRk 276 (283)
+.+-+..
T Consensus 85 r~l~v~~ 91 (95)
T 2ek1_A 85 RKVKLSG 91 (95)
T ss_dssp EECEEEC
T ss_pred cEEEEEe
Confidence 9887654
No 145
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.86 E-value=2.2e-05 Score=62.16 Aligned_cols=76 Identities=16% Similarity=0.158 Sum_probs=57.8
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c-CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N-CRDQSLYARVIVRSPAFITLILGENELMQFNIHG 269 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~-~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing 269 (283)
..+.+++|| +|.| ++++||++||.. | . |++|.|- + .++..+||.|.|.+++..+..|. .+ .-.|+|
T Consensus 13 ~~~~~~v~V---~nLp~~~te~dl~~~F~~-~-~--v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~--~~~~~g 82 (109)
T 2dnn_A 13 NPDDLYVSV---HGMPFSAMENDVRDFFHG-L-R--VDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK-RN--RMLMIQ 82 (109)
T ss_dssp CHHHHEEEE---ECCCSSCCHHHHHHHTTT-S-C--CCEEEECCCTTCCCCSEEEEECSSHHHHHHHHH-TT--TEEETT
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHhcc-C-C--eeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cC--CCeECC
Confidence 445678877 9999 999999999997 6 4 4555554 3 67889999999999999888874 22 236899
Q ss_pred ceeEEEeccc
Q 048589 270 KDVRVRRFVP 279 (283)
Q Consensus 270 k~iWaRky~p 279 (283)
|.|.+.+-.+
T Consensus 83 r~i~V~~a~~ 92 (109)
T 2dnn_A 83 RYVEVSPATE 92 (109)
T ss_dssp EEEEEEECCH
T ss_pred eEEEEEECCc
Confidence 9887765433
No 146
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.84 E-value=3.4e-05 Score=60.81 Aligned_cols=77 Identities=16% Similarity=0.122 Sum_probs=56.3
Q ss_pred CCCCCceEEEEccCCccC---CHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589 193 DADTDRTLFATFSKGHPI---TRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHG 269 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~Pv---se~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing 269 (283)
-++..+++|| ++.|- +|+||+++|.+ ||. |.+|.|-. .+.||+|.|.+++.....+...+.....|+|
T Consensus 11 ~~~p~~~l~V---~nLp~~~~te~dL~~lF~~-fG~--V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G 81 (102)
T 1x4d_A 11 RVETRRVVHI---MDFQRGKNLRYQLLQLVEP-FGV--ISNHLILN---KINEAFIEMATTEDAQAAVDYYTTTPALVFG 81 (102)
T ss_dssp CCCCCCEEEE---ESCCCSSSHHHHHHTTTGG-GSC--EEEEEECS---SSSCEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred CCCCCCEEEE---eCCCCCcCCHHHHHHHHHh-cCC--EEEEEEEc---CCCEEEEEECCHHHHHHHHHHHcCCCceECC
Confidence 3456789998 77775 99999999996 998 66666633 3479999999988877666532212346899
Q ss_pred ceeEEEecc
Q 048589 270 KDVRVRRFV 278 (283)
Q Consensus 270 k~iWaRky~ 278 (283)
|++.+..-.
T Consensus 82 r~l~V~~a~ 90 (102)
T 1x4d_A 82 KPVRVHLSQ 90 (102)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEECC
Confidence 999655443
No 147
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=97.03 E-value=2.5e-06 Score=66.61 Aligned_cols=81 Identities=15% Similarity=0.194 Sum_probs=61.7
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeE--------EEeec---CCCCCceEEEEecChHHHHHHhCCC
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVED--------IKMGN---CRDQSLYARVIVRSPAFITLILGEN 260 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~--------v~m~~---~~~qplfariVf~s~~~vd~vL~g~ 260 (283)
..+.+++|| +|.| ++++||+++|.+ ||. + +. |.+.. +++...||+|.|.+.+....++..-
T Consensus 4 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~-i-~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 77 (116)
T 2lcw_A 4 NSDNNTIFV---QGLGENVTIESVADYFKQ-IGI-I-KTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWF 77 (116)
Confidence 346788888 7888 999999999997 998 4 43 44432 5788899999999999988877632
Q ss_pred CeeeEEEcCceeEEEecccCCC
Q 048589 261 ELMQFNIHGKDVRVRRFVPKRA 282 (283)
Q Consensus 261 ~~~kf~Ingk~iWaRky~pk~~ 282 (283)
+. ..|+|+.+-++...|++.
T Consensus 78 ~g--~~~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 78 DG--KEFSGNPIKVSFATRRAD 97 (116)
Confidence 22 357899998877776653
No 148
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=97.82 E-value=3e-05 Score=58.72 Aligned_cols=73 Identities=18% Similarity=0.149 Sum_probs=56.1
Q ss_pred eEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCceeEEEe
Q 048589 199 TLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDVRVRR 276 (283)
Q Consensus 199 T~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~iWaRk 276 (283)
|+|| +|.| ++++||+++|.+ ||+ |+.|.|... ...||.|.|.+++....++..-+.. .++|+.+-++.
T Consensus 2 ~l~V---~nLp~~~t~~~l~~~F~~-~G~--i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~~ 71 (101)
T 2hvz_A 2 KVYV---GNLGTGAGKGELERAFSY-YGP--LRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGK--VICGSRVRVEL 71 (101)
T ss_dssp EEEE---ECCCSSCSHHHHHHHHHH-HCC--CSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHS--CSSSCCCEEEE
T ss_pred EEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCC--eECCcEEEEEE
Confidence 6676 6877 999999999986 998 677777542 7789999999999988776521111 47899998887
Q ss_pred cccCC
Q 048589 277 FVPKR 281 (283)
Q Consensus 277 y~pk~ 281 (283)
..|++
T Consensus 72 a~~~~ 76 (101)
T 2hvz_A 72 STGMP 76 (101)
T ss_dssp SSSCC
T ss_pred ccCCC
Confidence 76654
No 149
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=97.81 E-value=0.00014 Score=59.06 Aligned_cols=75 Identities=11% Similarity=0.153 Sum_probs=56.8
Q ss_pred CCCceEEEEccCCcc--CCHHHHH----HHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHh---CCCCeeeE
Q 048589 195 DTDRTLFATFSKGHP--ITRAELF----EFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLIL---GENELMQF 265 (283)
Q Consensus 195 ~d~RT~FvTFS~G~P--vse~Ei~----~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL---~g~~~~kf 265 (283)
+..+|+|| +|.| +++++++ ++|.+ ||+ |++|.+...++..+||+|.|.+.+..+..+ +|.
T Consensus 27 ~p~~~LfV---~nL~~~~~e~~L~~~L~~~F~~-~G~--I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~----- 95 (127)
T 2a3j_A 27 EPSQVVLI---TNINPEVPKEKLQALLYALASS-QGD--ILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGY----- 95 (127)
T ss_dssp SCCSEEEE---ESCCTTSCHHHHHHHHHHHHHH-HSC--EEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTC-----
T ss_pred CCCCEEEE---eCCCCCCCHHHHHHHHHHHhcc-CCC--eEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCC-----
Confidence 34689998 7777 8999876 68986 999 667777666788999999999988766555 564
Q ss_pred EEcCceeEEEecccC
Q 048589 266 NIHGKDVRVRRFVPK 280 (283)
Q Consensus 266 ~Ingk~iWaRky~pk 280 (283)
.++|+.+-+..-.++
T Consensus 96 ~l~gr~l~V~~a~~~ 110 (127)
T 2a3j_A 96 PFQGNPLVITFSETP 110 (127)
T ss_dssp CCTTSCCEEEECCCC
T ss_pred EeCCCEEEEEEccCc
Confidence 478888866554443
No 150
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=97.81 E-value=3.8e-05 Score=64.25 Aligned_cols=79 Identities=15% Similarity=0.205 Sum_probs=58.9
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIH 268 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~In 268 (283)
.++.+|+|| +|.| ++++||+++|.+ ||+ |+.|.+-. .++...||.|.|.+++.....+...+. ..|+
T Consensus 25 ~~~~~~l~V---~nLp~~~t~~~l~~~f~~-~G~--i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~--~~~~ 96 (216)
T 2qfj_A 25 LAIMSRVYV---GSIYYELGEDTIRQAFAP-FGP--IKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNS--VMLG 96 (216)
T ss_dssp HHHHTEEEE---ECCCTTCCHHHHHHHHGG-GSC--EEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSS--CCCC
T ss_pred cCcCCEEEE---ECCCCCCCHHHHHHHHHh-CCC--EEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccC--CeeC
Confidence 456789999 7888 999999999986 998 66666643 678899999999999998887652111 1478
Q ss_pred CceeEEEecccC
Q 048589 269 GKDVRVRRFVPK 280 (283)
Q Consensus 269 gk~iWaRky~pk 280 (283)
|+.+.+....++
T Consensus 97 g~~l~v~~~~~~ 108 (216)
T 2qfj_A 97 GRNIKVGRPSNI 108 (216)
T ss_dssp -CCCEEECCSCC
T ss_pred CeeEEEecCCCc
Confidence 998888665443
No 151
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=97.80 E-value=6.6e-05 Score=60.55 Aligned_cols=76 Identities=21% Similarity=0.320 Sum_probs=57.4
Q ss_pred CCCceEEEEccCCcc--CCHHHHHHHHHhhhCC--c-------eeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCee
Q 048589 195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGE--G-------CVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELM 263 (283)
Q Consensus 195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~--~-------cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~ 263 (283)
++.|++|| +|.| ++++||+++|.+ ||. + .|.++.+ ++...||.|.|.+++.....+. .+.
T Consensus 2 r~~~~l~V---~nLp~~~t~~~l~~~F~~-~g~~~g~~~~~~~~v~~~~~---~~~~g~afV~f~~~~~A~~A~~-~~~- 72 (172)
T 2g4b_A 2 GSARRLYV---GNIPFGITEEAMMDFFNA-QMRLGGLTQAPGNPVLAVQI---NQDKNFAFLEFRSVDETTQAMA-FDG- 72 (172)
T ss_dssp CGGGEEEE---ESCCTTCCHHHHHHHHHH-HHHHTTCCSSSSCSEEEEEE---ETTTTEEEEEESSHHHHHHHGG-GTT-
T ss_pred CcccEEEE---cCCCcccCHHHHHHHHHH-HhhhcccccCCCCceeeeEe---cCCCCEEEEEeCCHHHHHHHHH-hCC-
Confidence 46799999 7888 999999999997 831 1 2555555 4557999999999999888883 222
Q ss_pred eEEEcCceeEEEecccC
Q 048589 264 QFNIHGKDVRVRRFVPK 280 (283)
Q Consensus 264 kf~Ingk~iWaRky~pk 280 (283)
..++|+.+.++.-.++
T Consensus 73 -~~~~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 73 -IIFQGQSLKIRRPHDY 88 (172)
T ss_dssp -CEETTEECEEECCSSC
T ss_pred -cEecCceeeecCCccc
Confidence 2589999988765443
No 152
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=97.80 E-value=8.4e-05 Score=59.18 Aligned_cols=79 Identities=14% Similarity=0.069 Sum_probs=58.8
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhC-CceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYG-EGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHG 269 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G-~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing 269 (283)
.|....++|| +|.| ++++|++++|.+ || + |..+.+.. .+..+||+|.|.+.+..+..+..-+. ..++|
T Consensus 24 ~p~~~~~l~V---gnLp~~~te~dL~~~F~~-~G~~--v~~v~i~~-~~~rGfaFV~F~~~e~A~~Ai~~lng--~~l~G 94 (111)
T 2jvr_A 24 LPAKRYRITM---KNLPEGCSWQDLKDLARE-NSLE--TTFSSVNT-RDFDGTGALEFPSEEILVEALERLNN--IEFRG 94 (111)
T ss_dssp -CCCCEEEEE---ECSSCCCCHHHHHHHHHH-HTCC--CSEEECSS-CSSSCCEEEEESSHHHHHHHHHHTTT--EEETT
T ss_pred CCCCCCEEEE---ECCCCCCCHHHHHHHHHH-hCCe--eEEEEEEc-CCCCCEEEEEECCHHHHHHHHHHcCC--CEECC
Confidence 3555677877 7888 999999999997 99 6 66776632 45789999999999987776642221 26899
Q ss_pred ceeEEEecccC
Q 048589 270 KDVRVRRFVPK 280 (283)
Q Consensus 270 k~iWaRky~pk 280 (283)
+.+-++.-.++
T Consensus 95 r~i~V~~a~~~ 105 (111)
T 2jvr_A 95 SVITVERDDNP 105 (111)
T ss_dssp EEEEEEESCC-
T ss_pred eEEEEEECCCC
Confidence 99988766543
No 153
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=97.79 E-value=2.4e-05 Score=63.73 Aligned_cols=81 Identities=14% Similarity=0.145 Sum_probs=63.1
Q ss_pred CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589 192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNI 267 (283)
Q Consensus 192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~I 267 (283)
..+.+.+++|| +|.| ++++||+++|.+ ||. ... +.+.+ .+....||.|.|.+++..+..+. .-...|
T Consensus 8 ~~~~~~~~l~V---~nLp~~~t~~~l~~~f~~-~g~-~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~---l~g~~~ 78 (175)
T 1fje_B 8 SESTTPFNLFI---GNLNPNKSVAELKVAISE-LFA-KND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE---LTGLKV 78 (175)
T ss_dssp SSCSSSEEEEE---ECCCTTSCHHHHHHHHHH-HHH-HHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH---GGGEEE
T ss_pred CCCCCCcEEEE---eCCCCCCCHHHHHHHHHH-hCC-cce-EEEEECCCCccccEEEEEECCHHHHHHHHh---cCCCEe
Confidence 35678899998 8888 899999999997 885 333 33333 68889999999999999888884 223478
Q ss_pred cCceeEEEecccCC
Q 048589 268 HGKDVRVRRFVPKR 281 (283)
Q Consensus 268 ngk~iWaRky~pk~ 281 (283)
+|+.+-++...+++
T Consensus 79 ~g~~l~v~~~~~~~ 92 (175)
T 1fje_B 79 FGNEIKLEKPKGRD 92 (175)
T ss_dssp TTEEEEEECCCCSS
T ss_pred CCeEEEEecCCCcc
Confidence 89999988877653
No 154
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=97.79 E-value=2.1e-05 Score=63.42 Aligned_cols=57 Identities=18% Similarity=0.187 Sum_probs=46.6
Q ss_pred CCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CC--CCCceEEEEecChHHHHHHhC
Q 048589 196 TDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CR--DQSLYARVIVRSPAFITLILG 258 (283)
Q Consensus 196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~--~qplfariVf~s~~~vd~vL~ 258 (283)
|.||+|| +|.| ++++||+++|.+ ||+ |+.|.+-. ++ +...||.|.|.+++.....+.
T Consensus 2 ~~~~l~V---~nLp~~~te~~l~~~F~~-~G~--i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~ 65 (175)
T 3nmr_A 2 DAIKMFV---GQVPRTWSEKDLRELFEQ-YGA--VYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 65 (175)
T ss_dssp CCEEEEE---ESCCTTCCHHHHHHHHHT-TSC--EEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHH
T ss_pred CceEEEE---eCCCCCCCHHHHHHHHHh-CCC--EEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHH
Confidence 6789998 7888 999999999986 998 66665544 33 778999999999998776653
No 155
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=97.75 E-value=4.1e-05 Score=61.72 Aligned_cols=80 Identities=16% Similarity=0.177 Sum_probs=59.2
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceee-------EEEeecCCCCCceEEEEecChHHHHHHhCCCCeee
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVE-------DIKMGNCRDQSLYARVIVRSPAFITLILGENELMQ 264 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve-------~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~k 264 (283)
....+++|| +|.| +|+++|+++|.. ||. +.. .+.+.+.++...||+|.|.+.+.....+..-+.
T Consensus 42 ~~~~~~l~V---~nLp~~~te~~L~~~F~~-~G~-i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng-- 114 (143)
T 3egn_A 42 GEPNCRIYV---KNLAKHVQEKDLKYIFGR-YVD-FSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANG-- 114 (143)
T ss_dssp CSCCSEEEE---EEECTTCCHHHHHHHHGG-GCC-TTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTT--
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHH-hCC-cccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCC--
Confidence 455688988 7887 999999999986 997 432 244444688899999999999987777552111
Q ss_pred EEEcCceeEEEecccC
Q 048589 265 FNIHGKDVRVRRFVPK 280 (283)
Q Consensus 265 f~Ingk~iWaRky~pk 280 (283)
..|+|+.+-+....++
T Consensus 115 ~~~~g~~l~V~~a~~~ 130 (143)
T 3egn_A 115 YVLFGKPMVVQFARSA 130 (143)
T ss_dssp BEETTEECEEEECCCS
T ss_pred CEeCCcEEEEEECCCC
Confidence 2479999977766544
No 156
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=97.75 E-value=8.9e-05 Score=65.21 Aligned_cols=78 Identities=21% Similarity=0.265 Sum_probs=59.8
Q ss_pred CCCCceEEEEccCCcc--CCHHHHH----HHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELF----EFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNI 267 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~----~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~I 267 (283)
.+..||+|| +|.| ++++||+ ++|.+ ||+ |+.|.+-+.++...||+|.|.+.+.....+..-+. ..|
T Consensus 6 ~~~~~~l~V---~nlp~~~~~~~l~~~L~~~F~~-~G~--i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~ 77 (282)
T 3pgw_A 6 TRPNHTIYI---NNLNEKIKKDELKKSLYAIFSQ-FGQ--ILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQG--FPF 77 (282)
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHHHHhc-cCC--eEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcC--Cee
Confidence 345789988 8888 9999977 89975 998 66777666678889999999999998877642211 367
Q ss_pred cCceeEEEeccc
Q 048589 268 HGKDVRVRRFVP 279 (283)
Q Consensus 268 ngk~iWaRky~p 279 (283)
+|+.+-++...+
T Consensus 78 ~g~~l~v~~a~~ 89 (282)
T 3pgw_A 78 YDKPMRIQYAKT 89 (282)
T ss_pred CCcEEEEEEecc
Confidence 899887665433
No 157
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.75 E-value=3.2e-05 Score=59.80 Aligned_cols=60 Identities=13% Similarity=0.228 Sum_probs=48.9
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhC
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILG 258 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~ 258 (283)
...+.+++|| +|.| ++++||+++|.+ ||+ |+.+.+.. .++...||+|.|.+.+.....+.
T Consensus 21 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~--i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~ 84 (114)
T 1x5o_A 21 QEQDPTNLYI---SNLPLSMDEQELENMLKP-FGQ--VISTRILRDSSGTSRGVGFARMESTEKCEAVIG 84 (114)
T ss_dssp CCCCTTEEEE---ESCCTTCCHHHHHHTTTT-TSC--EEEEEEEECSSSCEEEEEEEEESCHHHHHHHHH
T ss_pred cCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--EEEEEEEECCCCCcceEEEEEECCHHHHHHHHH
Confidence 3456789988 7888 999999999986 998 66666654 56778999999999998777654
No 158
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=97.75 E-value=5.3e-05 Score=63.34 Aligned_cols=79 Identities=11% Similarity=0.245 Sum_probs=61.0
Q ss_pred CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589 195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNIHG 269 (283)
Q Consensus 195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing 269 (283)
...+++|| +|.| ++++||+++|.+ ||. |+.|.+.. .++...||.|.|.+.+.....+..-+. ..|+|
T Consensus 123 ~~~~~l~v---~nlp~~~t~~~l~~~f~~-~G~--v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g--~~~~g 194 (216)
T 2qfj_A 123 RAFNRIYV---ASVHQDLSDDDIKSVFEA-FGK--IKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNL--FDLGG 194 (216)
T ss_dssp TTSCEEEE---ECCCTTCCHHHHHHHHTT-SSC--EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT--CBCSS
T ss_pred CCCcEEEE---eCCCCcCCHHHHHHHHhc-cCC--eeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccC--CEeCC
Confidence 45689988 7777 999999999986 998 66666654 567789999999999987776652111 14799
Q ss_pred ceeEEEecccCC
Q 048589 270 KDVRVRRFVPKR 281 (283)
Q Consensus 270 k~iWaRky~pk~ 281 (283)
+.+=++...|++
T Consensus 195 ~~i~V~~a~~~~ 206 (216)
T 2qfj_A 195 QYLRVGKAVTPP 206 (216)
T ss_dssp SBCEEEECSSCS
T ss_pred cEEEEEEecCCC
Confidence 999888877764
No 159
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=97.74 E-value=0.00012 Score=60.35 Aligned_cols=76 Identities=21% Similarity=0.324 Sum_probs=56.7
Q ss_pred CCCceEEEEccCCcc--CCHHHHHHHHHhhhCC--c-------eeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCee
Q 048589 195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGE--G-------CVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELM 263 (283)
Q Consensus 195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~--~-------cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~ 263 (283)
+..||+|| +|.| ++++||+++|.+ ||. + -|.++.+ ++...||.|.|.+++..+..|. .+
T Consensus 2 ~~~~~l~V---~nLp~~~te~~l~~~F~~-~g~i~g~~~~~~~~v~~~~~---~~~~g~afV~F~~~~~A~~Al~-l~-- 71 (198)
T 2yh0_A 2 AMARRLYV---GNIPFGITEEAMMDFFNA-QMRLGGLTQAPGNPVLAVQI---NQDKNFAFLEFRSVDETTQAMA-FD-- 71 (198)
T ss_dssp --CCEEEE---ESCCTTCCHHHHHHHHHH-HHHHHTCCSSSSCSEEEEEE---ETTTTEEEEEESCSHHHHHHGG-GT--
T ss_pred CceeEEEE---cCCCCCCCHHHHHHHHHH-HHhhcccccCCCCceEEeEe---cCCCCEEEEEeCCHHHHHHHHH-hc--
Confidence 35689998 8888 999999999997 841 0 2455555 5568999999999999888883 22
Q ss_pred eEEEcCceeEEEecccC
Q 048589 264 QFNIHGKDVRVRRFVPK 280 (283)
Q Consensus 264 kf~Ingk~iWaRky~pk 280 (283)
...|+|+.+-++...++
T Consensus 72 g~~~~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 72 GIIFQGQSLKIRRPHDY 88 (198)
T ss_dssp TEEETTEEEEEECCCCC
T ss_pred CCEEcCceEEEeCCCCC
Confidence 23589999988765544
No 160
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=97.74 E-value=7.4e-05 Score=63.89 Aligned_cols=78 Identities=17% Similarity=0.263 Sum_probs=59.2
Q ss_pred CCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEe-ecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCcee
Q 048589 196 TDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKM-GNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKDV 272 (283)
Q Consensus 196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m-~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~i 272 (283)
..+++|| +|.| ++++||+++|.. ||+ |+.+.+ .+.+....||+|.|.+.+....++..-+- ..|+|+.+
T Consensus 102 ~~~~l~v---~nl~~~~t~~~l~~~F~~-~G~--i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng--~~~~g~~i 173 (213)
T 4f02_A 102 GVGNIFI---KNLDKSIDNKALYDTFSA-FGN--ILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG--MLLNDRKV 173 (213)
T ss_dssp CTTEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTT--CEETTEEC
T ss_pred ccccceE---CCcccccHHHHHHHHHhh-cCC--eEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCC--CEECCEEE
Confidence 4568887 7888 999999999986 998 555544 44556789999999999997776542110 25899999
Q ss_pred EEEecccCC
Q 048589 273 RVRRFVPKR 281 (283)
Q Consensus 273 WaRky~pk~ 281 (283)
-+..+.||+
T Consensus 174 ~V~~a~~~~ 182 (213)
T 4f02_A 174 FVGRFKSRK 182 (213)
T ss_dssp EEEECCCHH
T ss_pred EEEEcCCCc
Confidence 998887753
No 161
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=97.71 E-value=6.9e-05 Score=60.91 Aligned_cols=79 Identities=27% Similarity=0.190 Sum_probs=63.4
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGK 270 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk 270 (283)
.....+++|| +|.| ++++||+++|.+ ||+ |..+ ...++...||.|.|.+.+.....+..-+. ..|+|+
T Consensus 95 ~~~~~~~l~v---~nlp~~~t~~~l~~~F~~-~g~--v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~ 164 (175)
T 1fje_B 95 KVRAARTLLA---KNLSFNITEDELKEVFED-ALE--IRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQG--AEIDGR 164 (175)
T ss_dssp TTGGGGEEEE---ESCCSSCCHHHHHHHCTT-CSE--EEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTE--EEETTE
T ss_pred ccccCCEEEE---eCCCCCCCHHHHHHHHHh-cCe--EEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCC--CEECCe
Confidence 3456789988 6877 999999999997 998 5555 34788899999999999998888763221 478999
Q ss_pred eeEEEecccCC
Q 048589 271 DVRVRRFVPKR 281 (283)
Q Consensus 271 ~iWaRky~pk~ 281 (283)
.+-++-..||+
T Consensus 165 ~i~v~~a~~k~ 175 (175)
T 1fje_B 165 SVSLYYTGEKG 175 (175)
T ss_dssp EEEEEECSSCC
T ss_pred EEEEEecCCCC
Confidence 99998887774
No 162
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=97.69 E-value=9.9e-05 Score=62.74 Aligned_cols=79 Identities=13% Similarity=0.205 Sum_probs=60.6
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIH 268 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~In 268 (283)
.++..+|+|| +|.| ++++||+++|.+ ||+ |+.|.+.. .++...||.|.|.+.+....++...+.. .|+
T Consensus 84 ~~~~~~~l~V---~nLp~~~te~~L~~~F~~-~G~--I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~--~l~ 155 (177)
T 2f3j_A 84 GVETGAKLLV---SNLDFGVSDADIQELFAE-FGT--LKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGV--PLD 155 (177)
T ss_dssp SCTTCEEEEE---ECCCSCCCHHHHHHHHHH-TSC--CSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTC--BCS
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCC--EEC
Confidence 4556688988 7888 999999999997 998 67777754 5778899999999999887776532221 578
Q ss_pred CceeEEEeccc
Q 048589 269 GKDVRVRRFVP 279 (283)
Q Consensus 269 gk~iWaRky~p 279 (283)
|+.+-+....+
T Consensus 156 Gr~l~V~~a~~ 166 (177)
T 2f3j_A 156 GRPMDIQLVAS 166 (177)
T ss_dssp SSBCEEEEESS
T ss_pred CEEEEEEEecC
Confidence 98887665443
No 163
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=97.69 E-value=0.00019 Score=57.88 Aligned_cols=76 Identities=16% Similarity=0.203 Sum_probs=57.9
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNI 267 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~I 267 (283)
.+.+.+++|| +|.| ++++||+++|.+ ||+ |+.+.+.. .++...||.|.|.+.+.....+..-+. ..+
T Consensus 90 ~~~~~~~l~v---~nlp~~~t~~~l~~~f~~-~G~--v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g--~~~ 161 (172)
T 2g4b_A 90 PLPGAHKLFI---GGLPNYLNDDQVKELLTS-FGP--LKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG--MQL 161 (172)
T ss_dssp CCTTTTCEEE---ECCCTTCCHHHHHHHHHT-TSC--EEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTT--CEE
T ss_pred CCCCCCEEEE---EcCCCcCCHHHHHHHHHh-cCC--ceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCC--CEE
Confidence 3455789988 6887 999999999996 998 67776654 567789999999999987776652111 257
Q ss_pred cCceeEEEe
Q 048589 268 HGKDVRVRR 276 (283)
Q Consensus 268 ngk~iWaRk 276 (283)
+|+.+-++.
T Consensus 162 ~g~~l~V~~ 170 (172)
T 2g4b_A 162 GDKKLLVQR 170 (172)
T ss_dssp TTEECEEEE
T ss_pred CCeEEEEEe
Confidence 899886653
No 164
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.68 E-value=0.00023 Score=55.41 Aligned_cols=78 Identities=14% Similarity=0.267 Sum_probs=57.9
Q ss_pred CCCCCceEEEEccCCc--cC-----------CHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHh--
Q 048589 193 DADTDRTLFATFSKGH--PI-----------TRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLIL-- 257 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~--Pv-----------se~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL-- 257 (283)
-|...||+++. +. |- .++||+++|.+ ||+ |+.|.|.+ ....+||+|.|.+++.....+
T Consensus 11 ~~~~s~~l~l~---Nl~~~~~~~~~~~~~~~~e~~l~~~f~~-~G~--v~~v~i~~-~~~~G~afV~f~~~~~A~~Ai~~ 83 (112)
T 2dit_A 11 RMRHERVVIIK---NMFHPMDFEDDPLVLNEIREDLRVECSK-FGQ--IRKLLLFD-RHPDGVASVSFRDPEEADYCIQT 83 (112)
T ss_dssp CCCSCCEEEEE---SSCCTTHHHHCSHHHHHHHHHHHHHGGG-TSC--CSEEEEET-TCTTCEEEEECSCHHHHHHHHHH
T ss_pred CCCCceEEEEE---cCCCHHHhccCHHHHHHHHHHHHHHHHc-cCC--EeEEEEec-CCCCEEEEEEECCHHHHHHHHHH
Confidence 45567888773 32 21 26899999985 998 66677754 447899999999998866655
Q ss_pred -CCCCeeeEEEcCceeEEEecccCCC
Q 048589 258 -GENELMQFNIHGKDVRVRRFVPKRA 282 (283)
Q Consensus 258 -~g~~~~kf~Ingk~iWaRky~pk~~ 282 (283)
+|. .++||.+-+..+.|+..
T Consensus 84 lng~-----~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 84 LDGR-----WFGGRQITAQAWDGTTD 104 (112)
T ss_dssp STTC-----EETTEECEEEECCSCCC
T ss_pred cCCC-----EECCcEEEEEEeCCCCC
Confidence 453 57999999998888653
No 165
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=97.68 E-value=9.7e-05 Score=58.76 Aligned_cols=75 Identities=13% Similarity=0.119 Sum_probs=57.0
Q ss_pred CCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589 193 DADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILGENELMQFNI 267 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~g~~~~kf~I 267 (283)
.+.+.+++|| +|.| ++++||+++|.+ ||+ |+.+.+.. .+.+..||.|.|.+.+....++..-+.. .+
T Consensus 83 ~~~~~~~l~v---~nl~~~~t~~~l~~~f~~-~G~--i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~ 154 (166)
T 3md3_A 83 SSDDTFNLFV---GDLNVNVDDETLRNAFKD-FPS--YLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ--DL 154 (166)
T ss_dssp CCTTCEEEEE---ESCCTTCCHHHHHHHHTT-STT--EEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTC--EE
T ss_pred CCCCCceEEE---CCCCCCCCHHHHHHHHhc-cCC--eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC--cc
Confidence 3556788888 6877 999999999975 998 66666653 6778899999999999987776521111 47
Q ss_pred cCceeEEE
Q 048589 268 HGKDVRVR 275 (283)
Q Consensus 268 ngk~iWaR 275 (283)
+|+.+-+.
T Consensus 155 ~g~~i~v~ 162 (166)
T 3md3_A 155 NGRPLRIN 162 (166)
T ss_dssp TTEECEEE
T ss_pred CCcEEEEE
Confidence 99998654
No 166
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.67 E-value=0.00014 Score=64.22 Aligned_cols=76 Identities=11% Similarity=0.229 Sum_probs=55.7
Q ss_pred CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec-CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589 192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN-CRDQSLYARVIVRSPAFITLILGENELMQFNIH 268 (283)
Q Consensus 192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~-~~~qplfariVf~s~~~vd~vL~g~~~~kf~In 268 (283)
..+.+.||+|| +|.| ++++||+++|.+ ||. |+.|.|-. .+....||.|.|.+++.....+. .+ ...++
T Consensus 36 ~~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~--~~~~~ 106 (292)
T 2ghp_A 36 TRNRELTTVLV---KNLPKSYNQNKVYKYFKH-CGP--IIHVDVADSLKKNFRFARIEFARYDGALAAIT-KT--HKVVG 106 (292)
T ss_dssp ------CEEEE---EEECTTCCHHHHHHHHGG-GSC--EEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TT--TCEET
T ss_pred ccCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hC--CcEeC
Confidence 34667899998 7888 999999999997 998 66666644 44457999999999999888884 21 23678
Q ss_pred CceeEEEe
Q 048589 269 GKDVRVRR 276 (283)
Q Consensus 269 gk~iWaRk 276 (283)
|+.+.+..
T Consensus 107 g~~i~v~~ 114 (292)
T 2ghp_A 107 QNEIIVSH 114 (292)
T ss_dssp TEECEEEE
T ss_pred CcEEEEEE
Confidence 98887754
No 167
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=97.64 E-value=8.2e-05 Score=65.71 Aligned_cols=77 Identities=19% Similarity=0.122 Sum_probs=57.2
Q ss_pred CCceEEEEccCCcc--CCHHHHHHHHHhhhC--CceeeEEEeec--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589 196 TDRTLFATFSKGHP--ITRAELFEFFTRRYG--EGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILGENELMQFNIHG 269 (283)
Q Consensus 196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G--~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ing 269 (283)
+.++||| ++.| +|++||+++|.+ || . +++...+.+ +++...||+|.|.+.+....++...+. ..|+|
T Consensus 67 ~~~~lfV---gnL~~~~te~~L~~~F~~-~G~~~-v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng--~~~~G 139 (229)
T 3q2s_C 67 KRIALYI---GNLTWWTTDEDLTEAVHS-LGVND-ILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPK--RELHG 139 (229)
T ss_dssp --CEEEE---ESCCTTCCHHHHHHHHHT-TTCCC-EEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTT--SCBTT
T ss_pred CccEEEE---eCCCCCCCHHHHHHHHHH-HCCcc-eEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC--CeECC
Confidence 5667877 7888 999999999975 99 7 444334444 788899999999999998888763221 14789
Q ss_pred ceeEEEeccc
Q 048589 270 KDVRVRRFVP 279 (283)
Q Consensus 270 k~iWaRky~p 279 (283)
+.|-++...|
T Consensus 140 r~l~V~~a~~ 149 (229)
T 3q2s_C 140 QNPVVTPVNK 149 (229)
T ss_dssp BCCEEEECCH
T ss_pred EEeEEEECCC
Confidence 9998876544
No 168
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.00012 Score=55.11 Aligned_cols=71 Identities=17% Similarity=0.379 Sum_probs=54.3
Q ss_pred CCCCceEEEEccCCcc---CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhC---CCCeeeEEE
Q 048589 194 ADTDRTLFATFSKGHP---ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILG---ENELMQFNI 267 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P---vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~---g~~~~kf~I 267 (283)
.++.+++|| +|.| ++++||+++|.+ ||+ |+.|.+. ..||.|.|.+.+....++. |. .+
T Consensus 7 ~~~~~~l~V---~nlp~~~~t~~~l~~~F~~-~G~--v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~-----~~ 70 (96)
T 2kvi_A 7 IPPKSRLFI---GNLPLKNVSKEDLFRIFSP-YGH--IMQINIK-----NAFGFIQFDNPQSVRDAIECESQE-----MN 70 (96)
T ss_dssp --CCEEEEE---ESSTTSCCCHHHHHHHHTT-TCC--CCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCS-----SC
T ss_pred CCCCCEEEE---eCCCcccCCHHHHHHHHHh-cCC--EEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCC-----ee
Confidence 456789998 6776 699999999997 998 7788883 5799999999998777665 43 36
Q ss_pred cCceeEEEecccC
Q 048589 268 HGKDVRVRRFVPK 280 (283)
Q Consensus 268 ngk~iWaRky~pk 280 (283)
+|+.+-++...++
T Consensus 71 ~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 71 FGKKLILEVSSSN 83 (96)
T ss_dssp BTTTBCEEEEECC
T ss_pred CCcEEEEEEcCcC
Confidence 7888866655444
No 169
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=97.59 E-value=3.4e-05 Score=63.83 Aligned_cols=79 Identities=13% Similarity=0.202 Sum_probs=57.3
Q ss_pred CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c-CCCCCceEEEEecChHHHHHHhCCCCeeeEEE
Q 048589 192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N-CRDQSLYARVIVRSPAFITLILGENELMQFNI 267 (283)
Q Consensus 192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~-~~~qplfariVf~s~~~vd~vL~g~~~~kf~I 267 (283)
..+++.+++|| +|.| +||+||++||.+ ||. + .|.+- + .++...||.|.|.+++..+..|. .+ .-.|
T Consensus 41 ~~~~~~~~lfV---~nLp~~~te~dL~~~F~~-~Gi--~-~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~-~~--g~~l 110 (139)
T 2hgn_A 41 VQSTTGHCVHM---RGLPYKATENDIYNFFSP-LNP--V-RVHIEIGPDGRVTGEADVEFATHEEAVAAMS-KD--RANM 110 (139)
T ss_dssp ----CCCCEEC---CSCCTTCCHHHHHHHHCS-CCC--S-EEECCCSSSSCSSCCCEEECSHHHHHHHHTT-CC--SCSS
T ss_pred CCCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--e-EEEEEECCCCCCceEEEEEeCCHHHHHHHHh-hC--CCEE
Confidence 34567788887 8999 999999999997 995 3 45443 3 67888999999999999988883 22 2357
Q ss_pred cCceeEEEecccC
Q 048589 268 HGKDVRVRRFVPK 280 (283)
Q Consensus 268 ngk~iWaRky~pk 280 (283)
+||.|-+..-.++
T Consensus 111 ~gR~i~V~~a~~~ 123 (139)
T 2hgn_A 111 QHRYIELFLNSTT 123 (139)
T ss_dssp SSCCCCCEECCCS
T ss_pred CCEEEEEEECCCC
Confidence 8887766555444
No 170
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.57 E-value=0.00031 Score=62.02 Aligned_cols=80 Identities=14% Similarity=0.135 Sum_probs=63.1
Q ss_pred CCCCCceEEEEccCCcc---CCHHHHHHHHHhhhCCceeeEEEeec--C--CCCCceEEEEecChHHHHHHhCCCCeeeE
Q 048589 193 DADTDRTLFATFSKGHP---ITRAELFEFFTRRYGEGCVEDIKMGN--C--RDQSLYARVIVRSPAFITLILGENELMQF 265 (283)
Q Consensus 193 ~~~d~RT~FvTFS~G~P---vse~Ei~~fFt~~~G~~cve~v~m~~--~--~~qplfariVf~s~~~vd~vL~g~~~~kf 265 (283)
.....+++|| +|.| +++++|+++|.+ ||. |+.|.+-. . +.+..||.|.|.+.+....++ .-+. .
T Consensus 206 ~~~~~~~l~v---~nlp~~~~t~~~l~~~F~~-~G~--v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g--~ 276 (292)
T 2ghp_A 206 ATLEGREIMI---RNLSTELLDENLLRESFEG-FGS--IEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNR--S 276 (292)
T ss_dssp -CCTTTEEEE---EEECTTTCCHHHHHHHHGG-GSC--EEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTT--E
T ss_pred cCCCCceEEE---ECCCcccCCHHHHHHHHhc-cCC--eeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcC--C
Confidence 3456789988 6777 899999999996 998 77777765 3 778899999999999988777 3332 2
Q ss_pred EEcCceeEEEecccCC
Q 048589 266 NIHGKDVRVRRFVPKR 281 (283)
Q Consensus 266 ~Ingk~iWaRky~pk~ 281 (283)
.|+|+.+-+....||.
T Consensus 277 ~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 277 LLGNREISVSLADKKP 292 (292)
T ss_dssp EETTEEEEEEECCCCC
T ss_pred EECCcEEEEEEecCCC
Confidence 5899999999888874
No 171
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.56 E-value=3.2e-05 Score=62.20 Aligned_cols=79 Identities=10% Similarity=0.142 Sum_probs=56.4
Q ss_pred CCCCceEEEEccCCcc---CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589 194 ADTDRTLFATFSKGHP---ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGK 270 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P---vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk 270 (283)
.+..+++|| ++.| ++++||+++|.+ ||+ |.+|.|- +...||+|.|.+++.....+...+.-...|+||
T Consensus 22 ~~p~~~l~V---~NLp~~~~te~~L~~lF~~-fG~--V~~v~i~---~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr 92 (112)
T 1x4f_A 22 QELGRVIHL---SNLPHSGYSDSAVLKLAEP-YGK--IKNYILM---RMKSQAFIEMETREDAMAMVDHCLKKALWFQGR 92 (112)
T ss_dssp SCCCCEEEE---ESCCCSSCCSHHHHTTTTT-TSC--CSEEEEE---TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSS
T ss_pred CCCCCEEEE---eCCCCccCCHHHHHHHHHh-cCC--EEEEEEe---cCCCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 344689988 6766 689999999986 998 6677773 347899999999887666654221112357899
Q ss_pred eeEEEecccCC
Q 048589 271 DVRVRRFVPKR 281 (283)
Q Consensus 271 ~iWaRky~pk~ 281 (283)
.+.+..-.+++
T Consensus 93 ~l~V~~a~~~~ 103 (112)
T 1x4f_A 93 CVKVDLSEKYK 103 (112)
T ss_dssp CCEEEEECSCS
T ss_pred EEEEEECcccc
Confidence 98766555443
No 172
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.56 E-value=0.00011 Score=57.42 Aligned_cols=67 Identities=19% Similarity=0.270 Sum_probs=52.6
Q ss_pred CCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHh---CCCCeeeEEEcCc
Q 048589 196 TDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLIL---GENELMQFNIHGK 270 (283)
Q Consensus 196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL---~g~~~~kf~Ingk 270 (283)
+.+++|| ++.| ++++||+++|.+ ||. |++|.|. ....||+|.|.+.+.....+ +|.. ++|+
T Consensus 9 ~~~~l~V---~nLp~~~te~~L~~~F~~-~G~--i~~v~i~---~~~g~afV~f~~~~~A~~Ai~~l~g~~-----~~g~ 74 (111)
T 1whx_A 9 SKTVILA---KNLPAGTLAAEIQETFSR-FGS--LGRVLLP---EGGITAIVEFLEPLEARKAFRHLAYSK-----FHHV 74 (111)
T ss_dssp EEEEEEE---ESCCTTCCHHHHHHHHHT-TSC--EEEEECC---SSSSCEEEEESCHHHHHHHHHHHTTCB-----SSSS
T ss_pred CCCEEEE---eCCCCCCCHHHHHHHHHh-cCC--EEEEEEe---CCCCEEEEEeCCHHHHHHHHHHhCCCE-----ECCe
Confidence 4678887 7777 999999999996 999 7888884 35679999999998876654 5543 7888
Q ss_pred ee---EEEe
Q 048589 271 DV---RVRR 276 (283)
Q Consensus 271 ~i---WaRk 276 (283)
++ ||+.
T Consensus 75 ~l~V~~a~~ 83 (111)
T 1whx_A 75 PLYLEWAPI 83 (111)
T ss_dssp BCEEEEEET
T ss_pred EEEEEECCC
Confidence 88 5543
No 173
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.51 E-value=0.0007 Score=52.99 Aligned_cols=75 Identities=12% Similarity=0.183 Sum_probs=53.9
Q ss_pred CceEEEEccCCc------cCCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCc
Q 048589 197 DRTLFATFSKGH------PITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGK 270 (283)
Q Consensus 197 ~RT~FvTFS~G~------Pvse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk 270 (283)
.+.+-|.+.... -+++++|+++|.+ ||+ |+.|.|- ++...||+|.|.+.+.....+.... .+.|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~-~G~--V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~~~----~~~g~ 80 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQK-YGE--VLNLVLS--SKKPGTAVVEFATVKAAELAVQNEV----GLVDN 80 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHT-TSC--EEEEEEE--SSSSSEEEEEESCHHHHHHHHHTCC----BCSSS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHh-cCC--EEEEEEc--cCCCCEEEEEECCHHHHHHHHHhcC----CCCCC
Confidence 456667776532 3999999999996 999 7777773 5778999999999988777776422 24577
Q ss_pred eeEEEecccC
Q 048589 271 DVRVRRFVPK 280 (283)
Q Consensus 271 ~iWaRky~pk 280 (283)
.+=++-..++
T Consensus 81 ~l~V~~a~~~ 90 (100)
T 2d9o_A 81 PLKISWLEGQ 90 (100)
T ss_dssp BCEEECSSCC
T ss_pred eEEEEEccCC
Confidence 7655444333
No 174
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=97.50 E-value=0.00041 Score=67.00 Aligned_cols=79 Identities=22% Similarity=0.193 Sum_probs=60.3
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N--CRDQSLYARVIVRSPAFITLILGENELMQFNIH 268 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~In 268 (283)
....+|||| +|.| +|+++|.++|.. ||. |+.|.|- + ++....||+|.|.+++.+..+|...+- ..|+
T Consensus 99 ~~~~~~lfV---~nL~~~~te~~L~~~F~~-~G~--I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng--~~i~ 170 (437)
T 3pgw_S 99 GDAFKTLFV---ARVNYDTTESKLRREFEV-YGP--IKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADG--KKID 170 (437)
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHH-cCC--eeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCC--CEEC
Confidence 445689988 7887 999999999997 998 5555553 3 688899999999999998877743221 2579
Q ss_pred CceeEEEecccC
Q 048589 269 GKDVRVRRFVPK 280 (283)
Q Consensus 269 gk~iWaRky~pk 280 (283)
|+.|-+..-.|+
T Consensus 171 gr~i~V~~a~~~ 182 (437)
T 3pgw_S 171 GRRVLVDVERGR 182 (437)
T ss_pred CEEEEEEEeCCC
Confidence 999977665554
No 175
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=97.50 E-value=0.00033 Score=61.60 Aligned_cols=71 Identities=13% Similarity=0.181 Sum_probs=52.5
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEc-Cc
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIH-GK 270 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~In-gk 270 (283)
.+..+|+|| +|.| ++++||+++|.+ ||+ |++|.+.. ....||.|.|.+.+.....+..-+- ..|+ |+
T Consensus 204 ~~~~~~l~v---~nl~~~~~~~~l~~~F~~-~G~--i~~v~~~~--~~~g~afV~f~~~~~A~~A~~~l~g--~~~~~g~ 273 (282)
T 3pgw_A 204 NPPNHILFL---TNLPEETNELMLSMLFNQ-FPG--FKEVRLVP--GRHDIAFVEFDNEVQAGAARDALQG--FKITQNN 273 (282)
T ss_pred CCCCCEEEE---eCCCCcCCHHHHHHHHHh-cCC--eEEEEEec--CCCcEEEEEeCCHHHHHHHHHHcCC--cEeCCCC
Confidence 445789988 7887 999999999996 998 77777753 2247999999999987776552221 3566 88
Q ss_pred eeEE
Q 048589 271 DVRV 274 (283)
Q Consensus 271 ~iWa 274 (283)
.+-+
T Consensus 274 ~l~v 277 (282)
T 3pgw_A 274 AMKI 277 (282)
T ss_pred EEEE
Confidence 7733
No 176
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=97.49 E-value=0.00028 Score=60.90 Aligned_cols=78 Identities=21% Similarity=0.271 Sum_probs=58.5
Q ss_pred CCCCCCceEEEEccCCcc---CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589 192 NDADTDRTLFATFSKGHP---ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIH 268 (283)
Q Consensus 192 ~~~~d~RT~FvTFS~G~P---vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~In 268 (283)
..+++.+|+|| +|.| ++++||+++|.+ ||+ |+.|.+.. ....||.|.|.+++.....+...+. ..++
T Consensus 29 ~~~~~~~~l~V---~nLp~~~~te~~L~~~F~~-~G~--i~~v~i~~--~~~g~afV~F~~~~~A~~Ai~~l~g--~~~~ 98 (229)
T 2adc_A 29 LAGAGNSVLLV---SNLNPERVTPQSLFILFGV-YGD--VQRVKILF--NKKENALVQMADGNQAQLAMSHLNG--HKLH 98 (229)
T ss_dssp GGCCCCSEEEE---ESCCTTTCCHHHHHHHHHH-HTC--EEEEEECC--TTSCCEEEEESCHHHHHHHHHHHTT--CBCS
T ss_pred CCCCCCCEEEE---eCCCcccCCHHHHHHHHHh-CCC--eEEEEEEE--CCCCEEEEEECCHHHHHHHHHHhCC--CeEC
Confidence 44567899999 6876 699999999986 998 77777744 2378999999999998876642111 2468
Q ss_pred CceeEEEeccc
Q 048589 269 GKDVRVRRFVP 279 (283)
Q Consensus 269 gk~iWaRky~p 279 (283)
|+.+-+....+
T Consensus 99 g~~l~v~~a~~ 109 (229)
T 2adc_A 99 GKPIRITLSKH 109 (229)
T ss_dssp SSBCEEECCSC
T ss_pred CeEEEEEEecC
Confidence 99988875554
No 177
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=97.44 E-value=0.00016 Score=56.64 Aligned_cols=61 Identities=11% Similarity=0.106 Sum_probs=46.3
Q ss_pred CCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhC---CCCeeeEEEcCc
Q 048589 196 TDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILG---ENELMQFNIHGK 270 (283)
Q Consensus 196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~---g~~~~kf~Ingk 270 (283)
...++|| +|.| ++++||+++|.+ ||+ |+.+.|... .||+|.|.+++.....+. |. .|+|+
T Consensus 15 ~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~--v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~-----~~~gr 79 (115)
T 3beg_B 15 SENRVVV---SGLPPSGSWQDLKDHMRE-AGD--VCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNT-----KFRSH 79 (115)
T ss_dssp --CCEEE---EECCSSCCTTHHHHHHGG-GSC--EEEEEECTT----SEEEEEESSHHHHHHHHHHHTTC-----BCCCT
T ss_pred CCcEEEE---eCCCCCCCHHHHHHHHHh-cCC--eEEEEEecC----CEEEEEECCHHHHHHHHHHhCCC-----EECCc
Confidence 4567777 7877 999999999996 998 677777432 899999999888666554 53 46777
Q ss_pred e
Q 048589 271 D 271 (283)
Q Consensus 271 ~ 271 (283)
.
T Consensus 80 ~ 80 (115)
T 3beg_B 80 E 80 (115)
T ss_dssp T
T ss_pred E
Confidence 6
No 178
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.41 E-value=0.0002 Score=63.08 Aligned_cols=77 Identities=12% Similarity=0.069 Sum_probs=61.1
Q ss_pred CCCceEEEEccCCcc--C-CHHHHHHHHHhhhCCceeeEEEee-c-CCCCCceEEEEecChHHHHHHhC---CCCeeeEE
Q 048589 195 DTDRTLFATFSKGHP--I-TRAELFEFFTRRYGEGCVEDIKMG-N-CRDQSLYARVIVRSPAFITLILG---ENELMQFN 266 (283)
Q Consensus 195 ~d~RT~FvTFS~G~P--v-se~Ei~~fFt~~~G~~cve~v~m~-~-~~~qplfariVf~s~~~vd~vL~---g~~~~kf~ 266 (283)
...+++|| +|.| + ++++|+++|.. ||. |+.+.+. + .+....||.|.|.+.+.....+. |. .
T Consensus 182 ~~~~~l~v---~nlp~~~~~~~~l~~~f~~-~G~--i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~-----~ 250 (284)
T 3smz_A 182 LHSRCLCV---DRLPPGFNDVDALCRALSA-VHS--PTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGL-----S 250 (284)
T ss_dssp TSCSEEEE---ECCCTTCCCHHHHHHHTCS-SSC--CSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTC-----E
T ss_pred CCccEEEE---ecCCcccCCHHHHHHHhhC-CCC--eEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCC-----c
Confidence 45688887 8888 5 89999999996 998 5555544 3 67788999999999998777654 53 4
Q ss_pred EcCceeEEEecccCCC
Q 048589 267 IHGKDVRVRRFVPKRA 282 (283)
Q Consensus 267 Ingk~iWaRky~pk~~ 282 (283)
++|+.+-+....|+..
T Consensus 251 ~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 251 LGGSHLRVSFCAPGPP 266 (284)
T ss_dssp ETTEECEEEECCSSSC
T ss_pred cCCeEEEEEEecCCCc
Confidence 6999999998888753
No 179
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=97.39 E-value=0.00016 Score=57.96 Aligned_cols=71 Identities=20% Similarity=0.212 Sum_probs=53.7
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHhC---CCCeeeE
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLILG---ENELMQF 265 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL~---g~~~~kf 265 (283)
+...+++|| +|.| ++++||+++|.+ ||+ |+.+.+.. .++...||.|.|.+.+.....+. |.
T Consensus 86 ~~~~~~l~v---~nl~~~~t~~~l~~~f~~-~G~--i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~----- 154 (168)
T 1b7f_A 86 SIKDTNLYV---TNLPRTITDDQLDTIFGK-YGS--IVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNV----- 154 (168)
T ss_dssp TTTTCEEEE---ESCCTTCCHHHHHHHHTS-SSC--EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-----
T ss_pred cCCCCCEEE---eCCCCCCCHHHHHHhhhc-CCc--EEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCC-----
Confidence 445688988 6777 999999999986 998 77776654 56778999999999998777654 53
Q ss_pred EEcC--ceeEEE
Q 048589 266 NIHG--KDVRVR 275 (283)
Q Consensus 266 ~Ing--k~iWaR 275 (283)
.++| +.+-++
T Consensus 155 ~~~g~~~~l~V~ 166 (168)
T 1b7f_A 155 IPEGGSQPLSVR 166 (168)
T ss_dssp CCTTCSSCCEEE
T ss_pred EecCCCeEEEEE
Confidence 3555 665443
No 180
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=97.38 E-value=0.00051 Score=60.57 Aligned_cols=74 Identities=18% Similarity=0.322 Sum_probs=58.0
Q ss_pred CCCCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhC---CCCeeeEE
Q 048589 192 NDADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILG---ENELMQFN 266 (283)
Q Consensus 192 ~~~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~---g~~~~kf~ 266 (283)
..+.+.+|+|| +|.| +|++||+++|.. ||+ |..|.|- +...||.|.|.+.+.....+. |. .
T Consensus 17 ~~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~--i~~v~i~---~~kg~afV~f~~~~~A~~A~~~l~g~-----~ 82 (261)
T 3sde_A 17 KTYTQRCRLFV---GNLPTDITEEDFKRLFER-YGE--PSEVFIN---RDRGFGFIRLESRTLAEIAKAELDGT-----I 82 (261)
T ss_dssp CSSCGGGEEEE---ESCCTTCCHHHHHHHTGG-GCC--CSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTC-----E
T ss_pred CCCCCCCEEEE---ECCCCCCCHHHHHHHHHh-cCC--EEEEEEe---CCCcEEEEEECCHHHHHHHHHHcCCc-----E
Confidence 34567789999 7888 999999999975 998 7777773 346899999999999887754 43 4
Q ss_pred EcCceeEEEeccc
Q 048589 267 IHGKDVRVRRFVP 279 (283)
Q Consensus 267 Ingk~iWaRky~p 279 (283)
|+|+.+-++...|
T Consensus 83 i~g~~l~v~~a~~ 95 (261)
T 3sde_A 83 LKSRPLRIRFATH 95 (261)
T ss_dssp ETTEECEEEECCC
T ss_pred ECCceeEeeeccc
Confidence 7888887765443
No 181
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=97.37 E-value=0.0003 Score=56.48 Aligned_cols=59 Identities=20% Similarity=0.225 Sum_probs=48.3
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHHhC
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLILG 258 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~vL~ 258 (283)
+...+++|| +|.| ++++||+++|.+ ||+ |++|.+.. .++...||.|.|.+.+.....+.
T Consensus 92 ~~~~~~l~v---~nl~~~~t~~~l~~~F~~-~G~--i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 3nmr_A 92 AVEDRKLFI---GMISKKCTENDIRVMFSS-FGQ--IEECRILRGPDGLSRGCAFVTFTTRAMAQTAIK 154 (175)
T ss_dssp CGGGSEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEEEEECTTSCEEEEEEEEESSHHHHHHHHH
T ss_pred cCCCCeEEE---cCCCCcCCHHHHHHHHHh-CCC--EEEEEEEECCCCCEEEEEEEEECCHHHHHHHHH
Confidence 446789988 7887 999999999986 998 67776654 56678899999999998777663
No 182
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.34 E-value=0.00052 Score=60.36 Aligned_cols=80 Identities=13% Similarity=0.055 Sum_probs=60.7
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c--CCCCCceEEEEecChHHHHHHhCCCCeeeEEEc
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N--CRDQSLYARVIVRSPAFITLILGENELMQFNIH 268 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~--~~~qplfariVf~s~~~vd~vL~g~~~~kf~In 268 (283)
+..++++|| +|.| ++++||+++|.. ||+ |+.+.+- + .+...+||.|.|.+.+.....+..-+. ..|+
T Consensus 92 ~~~~~~l~v---~nlp~~~t~~~l~~~f~~-~G~--i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~--~~~~ 163 (284)
T 3smz_A 92 QPTDALLCV---ANLPPSLTQQQFEELVRP-FGS--LERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLG--KPLG 163 (284)
T ss_dssp CCCSCEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT--CEET
T ss_pred cCCCCEEEE---cCCCCcCCHHHHHHHHHh-cCC--eeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCC--CEeC
Confidence 345578988 7887 999999999997 998 6665443 3 677889999999999998877632111 2679
Q ss_pred CceeEEEecccCC
Q 048589 269 GKDVRVRRFVPKR 281 (283)
Q Consensus 269 gk~iWaRky~pk~ 281 (283)
|+.+-++...|+.
T Consensus 164 g~~i~v~~a~~~~ 176 (284)
T 3smz_A 164 PRTLYVHWTDAGQ 176 (284)
T ss_dssp TEECEEEECCGGG
T ss_pred CcEEEEEECCCCC
Confidence 9999887776654
No 183
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=97.31 E-value=0.00029 Score=52.24 Aligned_cols=72 Identities=14% Similarity=0.180 Sum_probs=54.6
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCCCCeeeEEEcCce
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGENELMQFNIHGKD 271 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g~~~~kf~Ingk~ 271 (283)
+...+++|| +|.| ++++|++++|.+ | + |+.+.+. +...||+|.|.+++..+..+...+. ..++|+.
T Consensus 2 s~~~~~l~V---~nLp~~~t~~~l~~~F~~-~-~--v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g--~~~~g~~ 69 (88)
T 1wg1_A 2 SSGSSGILV---KNLPQDSNCQEVHDLLKD-Y-D--LKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQ--YSFRGKD 69 (88)
T ss_dssp CCCCCCEEE---ESCCSSCCHHHHHHHTCS-S-C--CCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTT--EEETTEE
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHhh-C-C--eEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCC--CeECCcE
Confidence 345689988 8888 999999999997 6 6 6666662 5678999999999987777652221 2578998
Q ss_pred eEEEec
Q 048589 272 VRVRRF 277 (283)
Q Consensus 272 iWaRky 277 (283)
+-++.-
T Consensus 70 l~V~~a 75 (88)
T 1wg1_A 70 LIVQLQ 75 (88)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 876643
No 184
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=97.22 E-value=0.00049 Score=57.19 Aligned_cols=71 Identities=23% Similarity=0.343 Sum_probs=55.2
Q ss_pred CCceEEEEccCCcc---CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhC---CCCeeeEEEcC
Q 048589 196 TDRTLFATFSKGHP---ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILG---ENELMQFNIHG 269 (283)
Q Consensus 196 d~RT~FvTFS~G~P---vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~---g~~~~kf~Ing 269 (283)
+.+|+|| +|.| ++++||+++|.+ ||+ |+.|.+.. ....||.|.|.+++.....+. |. .++|
T Consensus 2 ~~~~l~v---~nlp~~~~~~~~l~~~F~~-~G~--i~~v~i~~--~~~g~afV~f~~~~~a~~A~~~l~~~-----~~~g 68 (198)
T 1qm9_A 2 GNSVLLV---SNLNPERVTPQSLFILFGV-YGD--VQRVKILF--NKKENALVQMADGNQAQLAMSHLNGH-----KLHG 68 (198)
T ss_dssp CCCEEEE---ECCCSSSCCHHHHHHHHHT-TCC--CSEEECST--TCSSCCEEECTTTHHHHHHHHHHTTC-----CCSS
T ss_pred CCcEEEE---eCCCcccCCHHHHHHHHHh-cCC--EEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCC-----eecC
Confidence 5689988 7877 599999999986 998 77777744 237799999999999877654 53 3689
Q ss_pred ceeEEEeccc
Q 048589 270 KDVRVRRFVP 279 (283)
Q Consensus 270 k~iWaRky~p 279 (283)
+.+-+....+
T Consensus 69 ~~l~v~~a~~ 78 (198)
T 1qm9_A 69 KPIRITLSKH 78 (198)
T ss_dssp CCCEEEECCC
T ss_pred eEEEEEEecC
Confidence 9887765443
No 185
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=97.20 E-value=0.00041 Score=61.14 Aligned_cols=79 Identities=14% Similarity=0.086 Sum_probs=58.2
Q ss_pred CCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEee-c-CCCCCceEEEEecChHHHHHHhCC--CCeeeEEEcC
Q 048589 196 TDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMG-N-CRDQSLYARVIVRSPAFITLILGE--NELMQFNIHG 269 (283)
Q Consensus 196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~-~-~~~qplfariVf~s~~~vd~vL~g--~~~~kf~Ing 269 (283)
+.+++|| +|.| +|+++|+++|.. ||+ |+.|.+- + .+....||+|.|.+.+.....+.. .....+...|
T Consensus 95 ~~~~l~v---~nl~~~~t~~~l~~~F~~-~G~--i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 168 (261)
T 3sde_A 95 HGAALTV---KNLSPVVSNELLEQAFSQ-FGP--VEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTP 168 (261)
T ss_dssp CSSEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSC
T ss_pred cCCcccc---cCCCCCCCHHHHHHHHHh-cCC--eEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCC
Confidence 4578887 6777 999999999975 998 5555554 3 678899999999999997777764 2323333458
Q ss_pred ceeEEEecccC
Q 048589 270 KDVRVRRFVPK 280 (283)
Q Consensus 270 k~iWaRky~pk 280 (283)
+.+.+....++
T Consensus 169 r~i~v~~~~~~ 179 (261)
T 3sde_A 169 RPVIVEPMEQF 179 (261)
T ss_dssp CBCEEEECCCE
T ss_pred ceEEEeecccc
Confidence 88877665543
No 186
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=97.12 E-value=0.0019 Score=53.30 Aligned_cols=65 Identities=18% Similarity=0.200 Sum_probs=46.6
Q ss_pred CCCCCCceEEEEccC-CccCCHHHHHHHHHhhhCCceeeEEEeecCCCCCce-EEEEecChHHHHHH---hCCCC
Q 048589 192 NDADTDRTLFATFSK-GHPITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLY-ARVIVRSPAFITLI---LGENE 261 (283)
Q Consensus 192 ~~~~d~RT~FvTFS~-G~Pvse~Ei~~fFt~~~G~~cve~v~m~~~~~qplf-ariVf~s~~~vd~v---L~g~~ 261 (283)
..+...+.++|...+ .|++|++++++.|.+ ||. |++|.|-+ +...| |+|.|.+++..... |+|..
T Consensus 21 ~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~-yG~--V~~V~i~~--~~~gfqAFVef~~~~~A~~Ai~~LnG~~ 90 (130)
T 3zzy_A 21 AMAGQSPVLRIIVENLFYPVTLDVLHQIFSK-FGT--VLKIITFT--KNNQFQALLQYADPVSAQHAKLSLDGQN 90 (130)
T ss_dssp ----CCSEEEEEEESCCSCCCHHHHHHHHTT-SSC--EEEEEEEE--ETTEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred ccCCCCceEEEEECCCCCCCCHHHHHHHHhC-cCC--EEEEEEEc--CCCCcEEEEEECCHHHHHHHHHHcCCCe
Confidence 334456788777666 678999999999997 999 77777754 23567 99999998765444 66754
No 187
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.11 E-value=0.002 Score=51.95 Aligned_cols=59 Identities=19% Similarity=0.286 Sum_probs=44.1
Q ss_pred CCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHH---hCCCC
Q 048589 196 TDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLI---LGENE 261 (283)
Q Consensus 196 d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~v---L~g~~ 261 (283)
..+++||. -.|.| ++|++++++|.+ ||+ |++|.|.. ...||+|.|.+++..... |+|..
T Consensus 24 pt~~L~V~-Ng~L~~~~te~~L~~~F~~-fG~--v~~v~i~~---~rgfaFV~f~~~~~A~~Ai~~lnG~~ 87 (114)
T 2cq2_A 24 ATQSLVVA-NGGLGNGVSRNQLLPVLEK-CGL--VDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKE 87 (114)
T ss_dssp CCSEEEEE-TCTGGGTCCHHHHHHHHHH-HSC--EEEEECCT---TCSCEEEEESSHHHHHHHHHHTTTCE
T ss_pred CCCEEEEE-CCCCCCCCCHHHHHHHHHh-cCC--eEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 35788885 13344 999999999997 998 78888843 367999999998765554 45643
No 188
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=97.07 E-value=0.0011 Score=52.51 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=51.1
Q ss_pred CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeec---CCCCCceEEEEecChHHHHHHh---CCCCeeeEE
Q 048589 195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGN---CRDQSLYARVIVRSPAFITLIL---GENELMQFN 266 (283)
Q Consensus 195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~---~~~qplfariVf~s~~~vd~vL---~g~~~~kf~ 266 (283)
...+++|| +|.| ++++||+++|.+ ||+ |+.+.+.. .++...||.|.|.+.+.....+ +|. .
T Consensus 86 ~~~~~l~v---~nl~~~~t~~~l~~~f~~-~G~--i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~-----~ 154 (167)
T 1fxl_A 86 IRDANLYV---SGLPKTMTQKELEQLFSQ-YGR--IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-----K 154 (167)
T ss_dssp GTTCEEEE---ESCCTTCCHHHHHHHHGG-GSC--EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-----C
T ss_pred CCCCcEEE---CCCCCcCCHHHHHHHHHh-cCC--EeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC-----c
Confidence 45678888 6887 999999999996 998 66666643 5677899999999999877765 454 3
Q ss_pred EcCce
Q 048589 267 IHGKD 271 (283)
Q Consensus 267 Ingk~ 271 (283)
++|+.
T Consensus 155 ~~g~~ 159 (167)
T 1fxl_A 155 PSGAT 159 (167)
T ss_dssp CTTCS
T ss_pred cCCCc
Confidence 67754
No 189
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=97.01 E-value=0.0026 Score=54.80 Aligned_cols=68 Identities=22% Similarity=0.301 Sum_probs=52.9
Q ss_pred CCceEEEEccCCcc---CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHH---hCCCCeeeEEEcC
Q 048589 196 TDRTLFATFSKGHP---ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLI---LGENELMQFNIHG 269 (283)
Q Consensus 196 d~RT~FvTFS~G~P---vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~v---L~g~~~~kf~Ing 269 (283)
+.+|+|| ++.| +++++++++|.. ||+ |.+|.+-. ....||.|.|.+++..+.. |+|. .++|
T Consensus 3 ~~~~l~V---~nL~~~~~~~~~L~~~F~~-~G~--v~~v~i~~--~~~g~afV~f~~~~~A~~Ai~~lng~-----~~~g 69 (205)
T 3tyt_A 3 DSPVLMV---YGLDQSKMNCDRVFNVFCL-YGN--VEKVKFMK--SKPGAAMVEMADGYAVDRAITHLNNN-----FMFG 69 (205)
T ss_dssp CCSEEEE---ECCCTTTCCHHHHHHHHTT-TSC--EEEEEECT--TSTTCEEEEESSHHHHHHHHHHHTTC-----EETT
T ss_pred CCCEEEE---eCCCcccCCHHHHHHHHHh-cCC--eEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCC-----EECC
Confidence 4578888 7887 899999999986 999 67776633 3478999999999886655 5663 4788
Q ss_pred ceeEEEe
Q 048589 270 KDVRVRR 276 (283)
Q Consensus 270 k~iWaRk 276 (283)
|.+-+..
T Consensus 70 ~~l~v~~ 76 (205)
T 3tyt_A 70 QKMNVCV 76 (205)
T ss_dssp EECEEEE
T ss_pred ceEEEEE
Confidence 8886663
No 190
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=97.00 E-value=0.0025 Score=54.64 Aligned_cols=64 Identities=19% Similarity=0.223 Sum_probs=45.8
Q ss_pred CCCCceEEEEccC-CccCCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHH---hCCCC
Q 048589 194 ADTDRTLFATFSK-GHPITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLI---LGENE 261 (283)
Q Consensus 194 ~~d~RT~FvTFS~-G~Pvse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~v---L~g~~ 261 (283)
++..+.+.|...+ .+++++++++++|.+ ||+ |++|.|-+ .+...||+|.|.+++..... |+|..
T Consensus 41 ~~ps~vl~l~VgNL~~~vted~L~~~Fs~-fG~--V~~V~i~~-k~~rgfAFVeF~d~~~A~~Ai~~LnG~~ 108 (164)
T 1sjr_A 41 AGQSPVLRIIVENLFYPVTLDVLHQIFSK-FGT--VLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQN 108 (164)
T ss_dssp CCCCCEEEEEECSCCSCCCHHHHHHHHHH-HSC--EEEEEEEE-SSSCEEEEEEESCHHHHHHHHHHSTTBC
T ss_pred CCCCceEEEEEeCcCCCCCHHHHHHHHHh-cCC--EEEEEEEe-CCCCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 4455555444443 566999999999996 999 78888754 33567999999998765444 55654
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=96.87 E-value=0.0024 Score=52.96 Aligned_cols=73 Identities=18% Similarity=0.175 Sum_probs=54.6
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhC-CceeeEEEeecCCCCCceEEEEecChHHHHHHhC---CCCeeeEEE
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYG-EGCVEDIKMGNCRDQSLYARVIVRSPAFITLILG---ENELMQFNI 267 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G-~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~---g~~~~kf~I 267 (283)
.+..+|+|| +|.| +++++|+++|.+ || . |+.|.+-. ....||.|.|.+.+....++. |.. |
T Consensus 117 ~~~~~~l~v---~nl~~~~~~~~l~~~f~~-~G~~--v~~v~i~~--~~~g~afV~f~~~~~A~~A~~~l~g~~-----~ 183 (198)
T 1qm9_A 117 FPPSATLHL---SNIPPSVSEEDLKVLFSS-NGGV--VKGFKFFQ--KDRKMALIQMGSVEEAVQALIDLHNHD-----L 183 (198)
T ss_dssp CCCCCEEEE---CCCCTTCCHHHHHHHHHH-TTSC--CCEEEESS--TTSSCEEEECSSHHHHHHHHHHHTSSC-----C
T ss_pred CCCccEEEE---eCCCCCCCHHHHHHHHHH-cCCC--ceEEEEEe--CCCcEEEEEeCCHHHHHHHHHHhcCCc-----c
Confidence 345789988 7888 999999999997 99 7 77777632 236799999999998777654 533 5
Q ss_pred c-CceeEEEeccc
Q 048589 268 H-GKDVRVRRFVP 279 (283)
Q Consensus 268 n-gk~iWaRky~p 279 (283)
+ |+.+-+.--.|
T Consensus 184 ~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 184 GENHHLRVSFSKS 196 (198)
T ss_dssp SSCCSCCEEEECC
T ss_pred CCCCeEEEEeecc
Confidence 7 88876654433
No 192
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=96.82 E-value=0.00093 Score=60.37 Aligned_cols=59 Identities=15% Similarity=0.293 Sum_probs=46.4
Q ss_pred CCCCceEEEEccCCcc--C---------CHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHH---hCC
Q 048589 194 ADTDRTLFATFSKGHP--I---------TRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLI---LGE 259 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--v---------se~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~v---L~g 259 (283)
..+.||||| +|.| + +|++|+++|.+ ||+ |++|.|-. ...||+|.|.+.+..... |+|
T Consensus 131 ~~~~rtLfV---gnL~~~~~~~~~~~~~tEe~L~~~F~~-fG~--I~~v~v~~---~kG~AFV~F~~~~~Ae~A~~am~g 201 (240)
T 3u1l_A 131 RKKNKTLYV---GGIDGALNSKHLKPAQIESRIRFVFSR-LGD--IDRIRYVE---SKNCGFVKFKYQANAEFAKEAMSN 201 (240)
T ss_dssp CCCCCEEEE---ECTTGGGTTCCCCHHHHHHHHHHHHHT-TSC--EEEEEEEG---GGTEEEEEESSHHHHHHHHHHHTT
T ss_pred ccCCceeec---CCCChhhhcccccccCcHHHHHHHHHc-cCC--EEEEEEEC---CCCEEEEEeCCHHHHHHHHHHhCC
Confidence 457899999 6777 4 69999999997 999 88887743 468999999998876554 556
Q ss_pred CC
Q 048589 260 NE 261 (283)
Q Consensus 260 ~~ 261 (283)
..
T Consensus 202 ~~ 203 (240)
T 3u1l_A 202 QT 203 (240)
T ss_dssp CC
T ss_pred CE
Confidence 44
No 193
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.78 E-value=0.018 Score=46.71 Aligned_cols=62 Identities=19% Similarity=0.192 Sum_probs=45.1
Q ss_pred CCCCceEEEEccC-CccCCHHHHHHHHHhhhCCceeeEEEeecCCCCCce-EEEEecChHHHH---HHhCCCC
Q 048589 194 ADTDRTLFATFSK-GHPITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLY-ARVIVRSPAFIT---LILGENE 261 (283)
Q Consensus 194 ~~d~RT~FvTFS~-G~Pvse~Ei~~fFt~~~G~~cve~v~m~~~~~qplf-ariVf~s~~~vd---~vL~g~~ 261 (283)
++..++++|...+ .++++++++++.|.+ ||+ |++|.|-+ + ++| |+|.|.+++... .-|+|..
T Consensus 20 ~~ps~vl~l~V~NL~~~vt~~~L~~~Fs~-yG~--V~~v~i~~--~-~Gf~aFVef~~~~~A~~A~~~LnG~~ 86 (124)
T 2e5i_A 20 SGGNKVLLLSIQNPLYPITVDVLYTVCNP-VGK--VQRIVIFK--R-NGIQAMVEFESVLCAQKAKAALNGAD 86 (124)
T ss_dssp CCCCSEEEEEEESCCSCCCHHHHHHHHTT-TSC--EEEEEEEE--S-SSEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCCCcEEEEEEcCcCCCCCHHHHHHHHHh-cCC--EEEEEEEe--C-CCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 3446788666554 577999999999996 999 77776644 2 376 999999876533 3467765
No 194
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=96.66 E-value=0.0043 Score=53.38 Aligned_cols=73 Identities=18% Similarity=0.173 Sum_probs=54.9
Q ss_pred CCCCceEEEEccCCcc--CCHHHHHHHHHhhhC-CceeeEEEeecCCCCCceEEEEecChHHHHHHhC---CCCeeeEEE
Q 048589 194 ADTDRTLFATFSKGHP--ITRAELFEFFTRRYG-EGCVEDIKMGNCRDQSLYARVIVRSPAFITLILG---ENELMQFNI 267 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G-~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~---g~~~~kf~I 267 (283)
.+..+|+|| +|.| ++++||+++|.+ || . |+.|.+.. ....||.|.|.+.+....++. |. .+
T Consensus 148 ~~~~~~l~V---~nlp~~~t~~~l~~~f~~-~G~~--i~~v~i~~--~~~g~afV~f~~~~~A~~Ai~~l~g~-----~~ 214 (229)
T 2adc_A 148 FPPSATLHL---SNIPPSVSEEDLKVLFSS-NGGV--VKGFKFFQ--KDRKMALIQMGSVEEAVQALIDLHNH-----DL 214 (229)
T ss_dssp CCSCSEEEE---ECCCTTCCHHHHHHHHHT-TSCC--EEEEEECS--SSTTCEEEEESSHHHHHHHHHHHTTC-----BS
T ss_pred CCCCCEEEE---eCCCccCCHHHHHHHHHH-cCCC--eeEEEEEE--CCCcEEEEEECCHHHHHHHHHHHCCC-----cc
Confidence 344689988 6877 899999999997 99 7 77777732 235799999999998777754 53 35
Q ss_pred c-CceeEEEeccc
Q 048589 268 H-GKDVRVRRFVP 279 (283)
Q Consensus 268 n-gk~iWaRky~p 279 (283)
+ |+.+-+.--.|
T Consensus 215 ~~g~~l~v~~a~~ 227 (229)
T 2adc_A 215 GENHHLRVSFSKS 227 (229)
T ss_dssp SSSCBCEEEECSS
T ss_pred CCCCeEEEEEecC
Confidence 6 88886665444
No 195
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=96.58 E-value=0.0057 Score=47.53 Aligned_cols=59 Identities=19% Similarity=0.304 Sum_probs=43.1
Q ss_pred CCHHHHHHHH-----------HhhhCCceeeEEEeec--CCCCCceEEEEecChHHHHHH---hCCCCeeeEEEcCceeE
Q 048589 210 ITRAELFEFF-----------TRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAFITLI---LGENELMQFNIHGKDVR 273 (283)
Q Consensus 210 vse~Ei~~fF-----------t~~~G~~cve~v~m~~--~~~qplfariVf~s~~~vd~v---L~g~~~~kf~Ingk~iW 273 (283)
++++|++++| .++||. |++|.+-. .+++.+||.|.|.+++..... |+|. .++||.+-
T Consensus 27 ~~~~~l~~~f~~~~edl~~~f~~~~G~--V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~-----~~~Gr~i~ 99 (104)
T 1jmt_A 27 VSDVEMQEHYDEFFEEVFTEMEEKYGE--VEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR-----WFNGQPIH 99 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC--EEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTC-----EETTEECC
T ss_pred cCHHHHHHHHHHHHHHHHHHhhccCCc--eEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCC-----EECCEEEE
Confidence 6777776666 256999 66666654 567899999999998876544 5664 48899886
Q ss_pred EE
Q 048589 274 VR 275 (283)
Q Consensus 274 aR 275 (283)
+.
T Consensus 100 v~ 101 (104)
T 1jmt_A 100 AE 101 (104)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 196
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=96.58 E-value=0.0047 Score=48.27 Aligned_cols=61 Identities=15% Similarity=0.080 Sum_probs=46.7
Q ss_pred CHHHHHHHHHhhhCCceeeEEEeec----CCCCCceEEEEecChHHHHHH---hCCCCeeeEEEcCceeEEEeccc
Q 048589 211 TRAELFEFFTRRYGEGCVEDIKMGN----CRDQSLYARVIVRSPAFITLI---LGENELMQFNIHGKDVRVRRFVP 279 (283)
Q Consensus 211 se~Ei~~fFt~~~G~~cve~v~m~~----~~~qplfariVf~s~~~vd~v---L~g~~~~kf~Ingk~iWaRky~p 279 (283)
+++||++.|. +||. |++|.+-. +++..+||.|.|.+++..... |+|. .++||.+-+..+.+
T Consensus 26 ~~~dl~~~f~-~~G~--V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~-----~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 26 LEVETKEECE-KYGK--VGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGR-----YFGGRVVKACFYNL 93 (105)
T ss_dssp CHHHHHHHGG-GGSC--EEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTC-----EETTEECEEEECCH
T ss_pred HHHHHHHHHH-hcCC--EEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCC-----EECCcEEEEEEcCH
Confidence 6899999997 5998 66666643 257789999999998865443 5674 47999998876643
No 197
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.0074 Score=50.68 Aligned_cols=38 Identities=16% Similarity=0.165 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecC
Q 048589 210 ITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRS 249 (283)
Q Consensus 210 vse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s 249 (283)
+++++|++||.+ ||+ ..+.-.+.+ ++++.+||.|.|.+
T Consensus 18 tte~~Lk~~Fs~-fGe-V~~~~li~Dp~Tg~slGfgfVef~d 57 (136)
T 2j8a_A 18 IQDISIKNYFKK-YGE-ISHFEAFNDPNSALPLHVYLIKYAS 57 (136)
T ss_dssp CCHHHHHHHHHT-TSC-CSEEEEEECTTTCCEEEEEEEECC-
T ss_pred CCHHHHHHHHHh-cCC-eEEEEEEecCCCCceeeEEEEEECC
Confidence 999999999995 998 555555555 89999999999994
No 198
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=96.11 E-value=0.011 Score=50.92 Aligned_cols=58 Identities=17% Similarity=0.126 Sum_probs=44.3
Q ss_pred CCCceEEEEccCCcc--CCHHHHHHHHHhhhCCce-eeEEEeec-CCCCCceEEEEecChHHHHHHh
Q 048589 195 DTDRTLFATFSKGHP--ITRAELFEFFTRRYGEGC-VEDIKMGN-CRDQSLYARVIVRSPAFITLIL 257 (283)
Q Consensus 195 ~d~RT~FvTFS~G~P--vse~Ei~~fFt~~~G~~c-ve~v~m~~-~~~qplfariVf~s~~~vd~vL 257 (283)
+..+++|| ++.| +|+++++++|.. ||. + +.+|.+-. .++...||.|-|.+.+.....+
T Consensus 121 ~p~~~l~v---~NLp~~~t~~~L~~~F~~-~G~-v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai 182 (205)
T 3tyt_A 121 HPSNVLHF---FNAPLEVTEENFFEICDE-LGV-KRPTSVKVFSGKSERSSSGLLEWDSKSDALETL 182 (205)
T ss_dssp CCCSEEEE---EEECTTCCHHHHHHHHHH-HTC-CCCSEEEECSCCSSSSEEEEEECSSHHHHHHHH
T ss_pred CCcceEEE---eCCCCCCCHHHHHHHHHh-cCC-cceEEEEEEcCCCCCceEEEEEeCCHHHHHHHH
Confidence 34689988 7887 999999999997 998 5 25665543 4455699999999987755543
No 199
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=96.09 E-value=0.022 Score=53.91 Aligned_cols=64 Identities=17% Similarity=0.241 Sum_probs=47.9
Q ss_pred CCCCCceEEEEcc-CCccCCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHH---hCCCCe
Q 048589 193 DADTDRTLFATFS-KGHPITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLI---LGENEL 262 (283)
Q Consensus 193 ~~~d~RT~FvTFS-~G~Pvse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~v---L~g~~~ 262 (283)
.++..+++||-=- -.+-+||+++++.|.+ ||+ |++|.|-. ...||+|.|.+.+..... |||...
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~-~G~--V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEK-CGL--VDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHT-TSC--EEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHh-cCC--eEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 4556689999421 1355999999999997 999 78899943 468999999998764444 667653
No 200
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=95.69 E-value=0.022 Score=44.40 Aligned_cols=64 Identities=11% Similarity=0.011 Sum_probs=49.5
Q ss_pred eEEEEccCCcc--CCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHH---HHhCCCCeeeEEEcCceeE
Q 048589 199 TLFATFSKGHP--ITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFIT---LILGENELMQFNIHGKDVR 273 (283)
Q Consensus 199 T~FvTFS~G~P--vse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd---~vL~g~~~~kf~Ingk~iW 273 (283)
.+|| ++.+ +||++++++|.+ ||+ |.++.+.. +.+||+|-|.+++..+ ..||| ..+.||.|-
T Consensus 9 wL~V---gNL~~~~te~~L~~lF~q-~G~--V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln~-----~~l~gr~I~ 74 (89)
T 2wbr_A 9 WLLL---KNLTAQIDGPTLRTLCMQ-HGP--LVSFHPYL---NQGIALCKYTTREEANKAQMALNN-----CVLANTTIF 74 (89)
T ss_dssp EEEE---ECCCTTCCCHHHHHHHHH-HSC--EEEEEEET---TTTEEEEEESSHHHHHHHHHHHTT-----EEETTEEEE
T ss_pred eEEE---eCCCccCCHHHHHHHHHh-hCC--EEEEEEcC---CCcEEEEEECCHHHHHHHHHHhcC-----CEECCcEEE
Confidence 4554 6665 999999999997 999 77788743 7899999999996644 35666 368888887
Q ss_pred EEe
Q 048589 274 VRR 276 (283)
Q Consensus 274 aRk 276 (283)
+..
T Consensus 75 V~~ 77 (89)
T 2wbr_A 75 AES 77 (89)
T ss_dssp EEC
T ss_pred EEE
Confidence 654
No 201
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=95.60 E-value=0.027 Score=43.83 Aligned_cols=61 Identities=15% Similarity=0.036 Sum_probs=46.4
Q ss_pred CHHHHHHHHHhhhCCceeeEEEeec-C----CCCCceEEEEecChHHHHH---HhCCCCeeeEEEcCceeEEEeccc
Q 048589 211 TRAELFEFFTRRYGEGCVEDIKMGN-C----RDQSLYARVIVRSPAFITL---ILGENELMQFNIHGKDVRVRRFVP 279 (283)
Q Consensus 211 se~Ei~~fFt~~~G~~cve~v~m~~-~----~~qplfariVf~s~~~vd~---vL~g~~~~kf~Ingk~iWaRky~p 279 (283)
.++||++.|.+ ||. |++|.+-. . ++..+||.|.|.+++.... -|+|. .++||.+-+.-|-+
T Consensus 28 ~~~dl~~~f~k-~G~--V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~-----~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 28 IVEDVRDECSK-YGL--VKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR-----KFANRVVVTKYCDP 96 (105)
T ss_dssp HHHHHHHHHHT-TSC--EEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC-----EETTEECEEEEECH
T ss_pred HHHHHHHHHHc-cCC--EEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC-----EeCCCEEEEEEeCH
Confidence 46899999995 999 77777755 1 3567999999999877444 46674 57999998876644
No 202
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=94.84 E-value=0.067 Score=42.53 Aligned_cols=59 Identities=17% Similarity=0.075 Sum_probs=44.7
Q ss_pred CHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHH---HhCCCCeeeEEEcCceeEEEecc
Q 048589 211 TRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITL---ILGENELMQFNIHGKDVRVRRFV 278 (283)
Q Consensus 211 se~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~---vL~g~~~~kf~Ingk~iWaRky~ 278 (283)
-++||++.|. +||. |++|.+.+ ....+||.|.|.+++.... -|+|. .++||.+-+.-|-
T Consensus 30 l~edl~~~f~-kfG~--V~~v~i~~-~~~~G~~fV~f~~~e~A~~Ai~~lnG~-----~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 30 IKDDVIEECN-KHGG--VIHIYVDK-NSAQGNVYVKCPSIAAAIAAVNALHGR-----WFAGKMITAAYVP 91 (114)
T ss_dssp HHHHHHHHHT-TTTC--CSEEEECT-TCTTCCEEEECSSHHHHHHHHHHHTTC-----EETTEECEEEEEC
T ss_pred HHHHHHHHHh-ccCC--EEEEEEec-CCCcEEEEEEECCHHHHHHHHHHhCCC-----EECCEEEEEEEEc
Confidence 3678999997 5998 77787755 3357999999999876443 46775 5799999887654
No 203
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.71 E-value=0.15 Score=40.32 Aligned_cols=67 Identities=13% Similarity=0.075 Sum_probs=48.8
Q ss_pred CCce-EEEEccCCcc--CCHHHH----HHHHHhhhC-CceeeEEEeecCCCCCceEEEEecChHHHHHHh---CCCCeee
Q 048589 196 TDRT-LFATFSKGHP--ITRAEL----FEFFTRRYG-EGCVEDIKMGNCRDQSLYARVIVRSPAFITLIL---GENELMQ 264 (283)
Q Consensus 196 d~RT-~FvTFS~G~P--vse~Ei----~~fFt~~~G-~~cve~v~m~~~~~qplfariVf~s~~~vd~vL---~g~~~~k 264 (283)
.+.| +|| ++.| ++++++ +++|.+ || . |.+| ++ +||.|+|.+++...+.+ +|..
T Consensus 7 p~~T~lYV---~NL~~~~~~~~lk~~L~~lF~~-yGG~--Vl~V----tg---G~AfV~F~~~esA~~A~~~l~G~~--- 70 (96)
T 2diu_A 7 GCHTLLYV---YNLPANKDGKSVSNRLRRLSDN-CGGK--VLSI----TG---CSAILRFINQDSAERAQKRMENED--- 70 (96)
T ss_dssp CSSEEEEE---ESCCTTSCHHHHHHHHHHHHHT-TTCC--EEEC----CT---TCEEEEESSHHHHHHHHHHHTTCC---
T ss_pred CcceEEEE---eCCCCcCCHHHHHHHHHHHHHH-cCCe--eEEE----ec---CEEEEEECCHHHHHHHHHHhcCCc---
Confidence 3556 656 8888 898885 489997 95 7 5555 23 99999999999876654 5755
Q ss_pred EEEcCceeEEEecccC
Q 048589 265 FNIHGKDVRVRRFVPK 280 (283)
Q Consensus 265 f~Ingk~iWaRky~pk 280 (283)
+.||.|-+.-...+
T Consensus 71 --l~gr~i~v~~A~~~ 84 (96)
T 2diu_A 71 --VFGNRIIVSFTPKN 84 (96)
T ss_dssp --SSSSCCEEESSCCS
T ss_pred --cCCceEEEEecCCC
Confidence 78888877654443
No 204
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=93.64 E-value=0.15 Score=40.67 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhhCCceeeEEEeec--C-----CCCCceEEEEecChHHHH---HHhCCCCeeeEEEcCceeEEEecc
Q 048589 212 RAELFEFFTRRYGEGCVEDIKMGN--C-----RDQSLYARVIVRSPAFIT---LILGENELMQFNIHGKDVRVRRFV 278 (283)
Q Consensus 212 e~Ei~~fFt~~~G~~cve~v~m~~--~-----~~qplfariVf~s~~~vd---~vL~g~~~~kf~Ingk~iWaRky~ 278 (283)
++||++.|. +||. |++|.+-. . ++..+||.|.|.+++... .-|+|. .++||.+-+.-|-
T Consensus 39 eedl~eef~-k~G~--V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr-----~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 39 EGEVTEECG-KFGA--VNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR-----WFAGRKVVAEVYD 107 (118)
T ss_dssp HHHHHHHHT-TTSC--EEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTC-----EETTEECEEEEEC
T ss_pred HHHHHHHHh-ccCC--EeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCC-----EECCcEEEEEEcC
Confidence 789999998 5998 66666654 2 234589999999987644 346775 5799999887664
No 205
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=91.43 E-value=0.14 Score=50.31 Aligned_cols=57 Identities=16% Similarity=0.298 Sum_probs=42.8
Q ss_pred CCceEEEEccCCccCCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCC
Q 048589 196 TDRTLFATFSKGHPITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGE 259 (283)
Q Consensus 196 d~RT~FvTFS~G~Pvse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g 259 (283)
..||+||-+++. +++.|+.+||.+ ||+ |.++.|.+. -..||-|=|.+.+.++.++..
T Consensus 52 a~rsv~v~~~~~--~~~~~l~~y~~~-~g~--i~~~~~~~~--~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIHCPEK--ISENKFLKYLSQ-FGP--INNHFFYES--FGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEEECCC-----CHHHHHHGG-GSC--CCCEEEECS--SSEEEEEECC---CCHHHHSS
T ss_pred hcceEEEEcCCC--CCHHHHHHHHHh-cCC--cceEEEEcc--CCeEEEEEeCCHHHHHHHHhc
Confidence 459999987544 999999999975 999 999999872 229999999999999999876
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.97 E-value=0.22 Score=40.53 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=39.3
Q ss_pred cCCHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecC-hHHHHHHhCCCCeeeEEEcCcee
Q 048589 209 PITRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRS-PAFITLILGENELMQFNIHGKDV 272 (283)
Q Consensus 209 Pvse~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s-~~~vd~vL~g~~~~kf~Ingk~i 272 (283)
++|+++|+++|.+ ||+ |..|.+.. .+..|.|-|.+ +......+..-+.-++.|+|+.+
T Consensus 30 ~~sredLke~F~~-~G~--V~~Vd~~~---g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 30 QTCREDLHILFSN-HGE--IKWIDFVR---GAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp SCCHHHHHHHTCS-SCC--EEEEECCT---TCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred cCCHHHHHHHHHh-cCC--EEEEEEec---CCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 4899999999997 999 88998865 22269999999 54433333322223446666433
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=88.83 E-value=0.83 Score=38.73 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=45.0
Q ss_pred CHHHHHHHHHhhhCCceeeEEEeec-------CCCCCceEEEEecChHHHH---HHhCCCCeeeEEEcCceeEEEec
Q 048589 211 TRAELFEFFTRRYGEGCVEDIKMGN-------CRDQSLYARVIVRSPAFIT---LILGENELMQFNIHGKDVRVRRF 277 (283)
Q Consensus 211 se~Ei~~fFt~~~G~~cve~v~m~~-------~~~qplfariVf~s~~~vd---~vL~g~~~~kf~Ingk~iWaRky 277 (283)
.++|+++-|. +||. |++|.+-+ ++++.+||.|.|.+++... .-|+|. .++||.|-+.-|
T Consensus 142 ~~~dl~~e~~-~~G~--v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr-----~~~gr~i~~~~~ 210 (222)
T 3dxb_A 142 LEGEVTEECG-KFGA--VNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR-----WFAGRKVVAEVY 210 (222)
T ss_dssp HHHHHHHHHT-TTSC--EEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTC-----BSSSSBCEEEEC
T ss_pred HHHHHHHHHH-ccCC--eEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCc-----eECCeEEEEEEc
Confidence 4678999998 5998 66666643 3477899999999987644 557785 489999988765
No 208
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.12 E-value=11 Score=30.11 Aligned_cols=73 Identities=22% Similarity=0.337 Sum_probs=57.2
Q ss_pred ceEEEEccCCcc--CCHHHHHHHHHhh--hCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCC-CCeeeEEEcCcee
Q 048589 198 RTLFATFSKGHP--ITRAELFEFFTRR--YGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGE-NELMQFNIHGKDV 272 (283)
Q Consensus 198 RT~FvTFS~G~P--vse~Ei~~fFt~~--~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g-~~~~kf~Ingk~i 272 (283)
+++-| .|.| ++++-+.-||+++ -|-|=|++|.-.. .=|.|+|...+.+++||.. .+ .++|-.+
T Consensus 9 ~~I~V---~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-----~~AvItF~d~~va~rVL~k~~H----~L~~~~L 76 (104)
T 2dhx_A 9 VAVEV---RGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-----CGGVLTFREPADAERVLAQADH----ELHGAQL 76 (104)
T ss_dssp CEEEE---ESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-----TEEEEEESSHHHHHHHHTCSCC----BSSSSBC
T ss_pred cEEEE---ECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-----CcEEEEEcChHHHHHHhcCCcc----eecCeEE
Confidence 45655 6777 8888899999984 3533577776522 4489999999999999997 66 8899999
Q ss_pred EEEecccCCC
Q 048589 273 RVRRFVPKRA 282 (283)
Q Consensus 273 WaRky~pk~~ 282 (283)
=++-|.|+.+
T Consensus 77 sV~P~~~~~~ 86 (104)
T 2dhx_A 77 SLRPAPPRAP 86 (104)
T ss_dssp EEEECCCCCC
T ss_pred EEEcCCCCCc
Confidence 9999988764
No 209
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.16 E-value=15 Score=28.51 Aligned_cols=69 Identities=16% Similarity=0.239 Sum_probs=46.5
Q ss_pred ceEEEEccC---CccCCH----HHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhC--CCCeeeEEEc
Q 048589 198 RTLFATFSK---GHPITR----AELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILG--ENELMQFNIH 268 (283)
Q Consensus 198 RT~FvTFS~---G~Pvse----~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~--g~~~~kf~In 268 (283)
=|++|--.. +...-. .++.+.|.. ||+ |..|.+.. ++ |.|.|++.+....+++ |. .|+
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~-~G~--Vi~vr~~~-d~----~fVtF~d~~sAlaAi~mnG~-----~v~ 74 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFAS-FGE--VILIRFVE-DK----MWVTFLEGSSALNVLSLNGK-----ELL 74 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHT-TCC--EEEEEECS-SS----EEEEESSHHHHHHGGGGTTC-----EET
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHh-CCC--eEEEEEec-CC----EEEEECChHHHHHHHhcCCe-----EeC
Confidence 477665522 233333 679999997 998 55555543 22 8999999988766665 43 599
Q ss_pred CceeEEEeccc
Q 048589 269 GKDVRVRRFVP 279 (283)
Q Consensus 269 gk~iWaRky~p 279 (283)
||.+=++.-.|
T Consensus 75 Gr~LkV~lkt~ 85 (91)
T 2dnr_A 75 NRTITIALKSP 85 (91)
T ss_dssp TEEEEEEECCC
T ss_pred CeEEEEEeCCC
Confidence 99987766554
No 210
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=71.40 E-value=1.8 Score=33.28 Aligned_cols=16 Identities=25% Similarity=0.765 Sum_probs=14.9
Q ss_pred CCHHHHHHHHHhhhCC
Q 048589 210 ITRAELFEFFTRRYGE 225 (283)
Q Consensus 210 vse~Ei~~fFt~~~G~ 225 (283)
-|.+||++||..+||+
T Consensus 60 ~sd~eI~~~~v~RYG~ 75 (84)
T 2hl7_A 60 KSDGEIVDYMVARYGD 75 (84)
T ss_dssp CCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhcCC
Confidence 4799999999999998
No 211
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=70.47 E-value=1.9 Score=33.61 Aligned_cols=16 Identities=25% Similarity=0.771 Sum_probs=15.0
Q ss_pred CCHHHHHHHHHhhhCC
Q 048589 210 ITRAELFEFFTRRYGE 225 (283)
Q Consensus 210 vse~Ei~~fFt~~~G~ 225 (283)
-|.+||++||..+||+
T Consensus 57 ~Sd~eI~~~mv~RYGd 72 (90)
T 2kw0_A 57 KSKKEIVDYMVARYGN 72 (90)
T ss_dssp CCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhcCC
Confidence 4799999999999998
No 212
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=66.57 E-value=8.8 Score=31.82 Aligned_cols=66 Identities=20% Similarity=0.337 Sum_probs=47.8
Q ss_pred Ccc-CCHHHHHHHHHhhhCCceeeEEEeec-----------CCC-----CCceEEEEecChHHHHHHhCCCCeeeEEEcC
Q 048589 207 GHP-ITRAELFEFFTRRYGEGCVEDIKMGN-----------CRD-----QSLYARVIVRSPAFITLILGENELMQFNIHG 269 (283)
Q Consensus 207 G~P-vse~Ei~~fFt~~~G~~cve~v~m~~-----------~~~-----qplfariVf~s~~~vd~vL~g~~~~kf~Ing 269 (283)
||| =..+.|.++|++ ||+ .+|++.+.+ ..+ ..-.-+|.|+|....++.|.-+.++ |+|
T Consensus 14 GFp~~~~~~VI~~Fs~-~G~-IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i---i~G 88 (132)
T 3p3d_A 14 GYPETMANQVIAYFQE-FGT-ILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV---FNG 88 (132)
T ss_dssp CCCGGGHHHHHHHHGG-GSC-BCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE---ETT
T ss_pred ecCHHHHHHHHHHHHh-hce-EeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE---eCc
Confidence 888 566788999997 899 888776642 122 3455699999999999999955443 677
Q ss_pred ceeEEEec
Q 048589 270 KDVRVRRF 277 (283)
Q Consensus 270 k~iWaRky 277 (283)
--|=+.-|
T Consensus 89 ~mIGV~Py 96 (132)
T 3p3d_A 89 VLLGVIPY 96 (132)
T ss_dssp EECEEEEC
T ss_pred EEEEEEEC
Confidence 65555544
No 213
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=65.18 E-value=32 Score=27.99 Aligned_cols=68 Identities=18% Similarity=0.378 Sum_probs=48.9
Q ss_pred CCCCceEEEEccCCccCCHHHHHHHHHhhh-----CCceeeEEEeecCCCCCceEEEEecChHH---HHHHhCCCCeeeE
Q 048589 194 ADTDRTLFATFSKGHPITRAELFEFFTRRY-----GEGCVEDIKMGNCRDQSLYARVIVRSPAF---ITLILGENELMQF 265 (283)
Q Consensus 194 ~~d~RT~FvTFS~G~Pvse~Ei~~fFt~~~-----G~~cve~v~m~~~~~qplfariVf~s~~~---vd~vL~g~~~~kf 265 (283)
-+++||+ -.|.=-.-|+.+.|+.+.+. | |+ +..|+..- .-+. |.|.|.++++ ....|+|..
T Consensus 18 ~~~~rti-aL~~ipDtvndarIr~lve~-~~~i~~g~--i~KI~L~p-DH~G--Aivef~d~~~AgKasLaL~G~e---- 86 (117)
T 2l9w_A 18 KELETLI-CLFPLSDKVSPSLICQFLQE-EIHINEKD--IRKILLVS-DFNG--AIIIFRDSKFAAKMLMILNGSQ---- 86 (117)
T ss_dssp TTTTSCE-EEECCCTTCCHHHHHHHHHH-HTCCCTTT--CSEEEEET-TTTE--EEEECSCHHHHHHHHHHHSSEE----
T ss_pred ccCCcEE-EEecCCCCCCHHHHHHHHhh-hhccCccc--eeEEEEec-CCCc--eEEEEccchhhHHHHhhcCCee----
Confidence 4678888 33433334999999999997 8 98 66666643 4444 8999999988 566788864
Q ss_pred EEcCceeE
Q 048589 266 NIHGKDVR 273 (283)
Q Consensus 266 ~Ingk~iW 273 (283)
|.||.+-
T Consensus 87 -f~gr~Lr 93 (117)
T 2l9w_A 87 -FQGKVIR 93 (117)
T ss_dssp -ETTEEEE
T ss_pred -ecCeEEE
Confidence 5677653
No 214
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=54.74 E-value=27 Score=27.28 Aligned_cols=51 Identities=14% Similarity=0.307 Sum_probs=36.3
Q ss_pred HHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHH--hCCCCeeeEEEcCceeEEEe
Q 048589 213 AELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLI--LGENELMQFNIHGKDVRVRR 276 (283)
Q Consensus 213 ~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~v--L~g~~~~kf~Ingk~iWaRk 276 (283)
.++.+.|.. ||+ |..|.+.. .+ |.|.|++.+....+ |+|. .|+||.+=++.
T Consensus 39 ~~L~~~F~~-~G~--Vilvr~v~-d~----~fVtF~d~~sAl~AI~ldG~-----~v~Gr~L~V~~ 91 (95)
T 1ufw_A 39 TELMQTLGS-YGT--IVLVRINQ-GQ----MLVTFADSHSALSVLDVDGM-----KVKGRAVKISG 91 (95)
T ss_dssp HHHHHHHHH-HSC--CSEEEEET-TE----EEEECSCSHHHHHHHHGGGS-----EETTEEEEEEC
T ss_pred HHHHHHHHH-CCC--EEEEEEec-Cc----EEEEEcChHHHHHHHhcCCe-----eeCCeEEEEec
Confidence 568999998 997 44555543 22 99999888775444 5564 58999887664
No 215
>2dzr_A General transcription factor II-I repeat domain- containing protein 1; RSGI RUH-067, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.17 E-value=10 Score=30.11 Aligned_cols=60 Identities=20% Similarity=0.402 Sum_probs=40.2
Q ss_pred cCCccCCHHHHHHHHHhhhCCc--e--------------eeEEEeecCCCCCceEEEEecChHH-----HHHHhCCCCee
Q 048589 205 SKGHPITRAELFEFFTRRYGEG--C--------------VEDIKMGNCRDQSLYARVIVRSPAF-----ITLILGENELM 263 (283)
Q Consensus 205 S~G~Pvse~Ei~~fFt~~~G~~--c--------------ve~v~m~~~~~qplfariVf~s~~~-----vd~vL~g~~~~ 263 (283)
|.|.-.=++.|.++|.++||.- - =++|.++- =++ -|.||.+.+ +.+||...+..
T Consensus 2 ~~~~~~LReqVe~lFn~kygeALG~~~pV~VPY~~i~~np~av~V~G--LPe---gIpFr~P~~ygi~~Le~IL~~~~~I 76 (99)
T 2dzr_A 2 SSGSSGLREQVQDLFNKKYGEALGIKYPVQVPYKRIKSNPGSVIIEG--LPP---GIPFRKPCTFGSQNLERILAVADKI 76 (99)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHTCSSCCCCCHHHHHHCSSSEEEES--CCT---TCCSSCGGGSCHHHHHHHHHHTTTC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCCceeCCHHHHhcCCCeEEEec--CCC---CCcccCCCcccHHHHHHHHHhccCc
Confidence 3455566899999999999941 0 12333332 111 145666654 89999999999
Q ss_pred eEEEcC
Q 048589 264 QFNIHG 269 (283)
Q Consensus 264 kf~Ing 269 (283)
+|.|+-
T Consensus 77 ~F~Ikr 82 (99)
T 2dzr_A 77 KFTVTR 82 (99)
T ss_dssp EEEECS
T ss_pred EEEEec
Confidence 999974
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=36.05 E-value=1.1e+02 Score=24.57 Aligned_cols=47 Identities=15% Similarity=0.309 Sum_probs=37.6
Q ss_pred CccC-CHHHHHHHHHhhhCCceeeEEEeecCCCCCceEEEEecChHHHHHHhCC
Q 048589 207 GHPI-TRAELFEFFTRRYGEGCVEDIKMGNCRDQSLYARVIVRSPAFITLILGE 259 (283)
Q Consensus 207 G~Pv-se~Ei~~fFt~~~G~~cve~v~m~~~~~qplfariVf~s~~~vd~vL~g 259 (283)
|||- ....|.++|.+ ||+ .++..+ .+..-+=+|-|++.....+.|.-
T Consensus 31 GFp~~~~~~VL~~F~~-~G~-Iv~~~~----~~~~NWihI~Y~s~~~A~rAL~k 78 (119)
T 1wwh_A 31 GFPQASASYILLQFAQ-YGN-ILKHVM----SNTGNWMHIRYQSKLQARKALSK 78 (119)
T ss_dssp CCCGGGHHHHHHHHHT-TSC-EEEEEE----CSSSSEEEEEESSHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHh-hCc-EEEecc----CCCCCeEEEEeCCHHHHHHHHHh
Confidence 7884 45677999997 999 666654 45678899999999999999983
No 217
>1i27_A Transcription factor IIF; general transcription factor, RAP74, RAP30, TFIIF, RNA polymerase II, winged-helix domain; 1.02A {Homo sapiens} SCOP: a.4.5.30 PDB: 1j2x_A 2k7l_A*
Probab=29.12 E-value=32 Score=25.87 Aligned_cols=57 Identities=16% Similarity=0.079 Sum_probs=31.4
Q ss_pred CCccCCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHH---HHHHhCCCCeeeEEEcCce
Q 048589 206 KGHPITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAF---ITLILGENELMQFNIHGKD 271 (283)
Q Consensus 206 ~G~Pvse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~---vd~vL~g~~~~kf~Ingk~ 271 (283)
.-+||+||+|+.|+.++=.. .+| ..=.+. .-..++++. +..||---+..+-+|||+.
T Consensus 6 ~~~~iTEe~VrryL~rkPmT-------t~dLl~KFK~r--~~~~~~~e~v~~~a~ILkki~p~q~~~~g~~ 67 (73)
T 1i27_A 6 GDVQVTEDAVRRYLTRKPMT-------TKDLLKKFQTK--KTGLSSEQTVNVLAQILKRLNPERKMINDKM 67 (73)
T ss_dssp CCSSCCHHHHHHHHHHSCBC-------HHHHHHTSCHH--HHCCCHHHHHHHHHHHHHHHCCEEEEETTEE
T ss_pred cCCCcCHHHHHHHHHcCCcc-------HHHHHHHHHHh--cccCCCHHHHHHHHHHHHHcCHHhhccCCce
Confidence 35689999999999953221 222 110000 001234444 5566665556667888874
No 218
>2dn5_A General transcription factor II-I repeat domain- containing protein 1; structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.66 E-value=13 Score=28.86 Aligned_cols=58 Identities=22% Similarity=0.373 Sum_probs=36.2
Q ss_pred CccCCHHHHHHHHHhhhCCc----ee------------eEEEeecCCCCCceEEEEecChH-----HHHHHhCCCCeeeE
Q 048589 207 GHPITRAELFEFFTRRYGEG----CV------------EDIKMGNCRDQSLYARVIVRSPA-----FITLILGENELMQF 265 (283)
Q Consensus 207 G~Pvse~Ei~~fFt~~~G~~----cv------------e~v~m~~~~~qplfariVf~s~~-----~vd~vL~g~~~~kf 265 (283)
|--.=++.|.++|+.+||.- -. ++|+++- -+. -|.||.+. .+.+||.+.+..+|
T Consensus 4 ~~~~Lr~qV~~Lfn~kygeALG~~~pv~VPY~~~~~~p~~v~V~G--lP~---gi~FR~P~~y~I~~Le~IL~~~~~I~f 78 (89)
T 2dn5_A 4 GSSGLREQVKELFNEKYGEALGLNRPVLVPYKLIRDSPDAVEVTG--LPD---DIPFRNPNTYDIHRLEKILKAREHVRM 78 (89)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTTCSSCCCCCHHHHHHCTTSEEEES--CCT---TCCCCCSSSCCHHHHHHHHTTTTTCEE
T ss_pred cchhHHHHHHHHhhhhHHHHcCCCCceeccHHHHhcCCCeEEEEe--CCC---CccccCCccccHHHHHHHHhhccCceE
Confidence 33444789999999999930 10 1122211 111 24566554 59999999999999
Q ss_pred EEcC
Q 048589 266 NIHG 269 (283)
Q Consensus 266 ~Ing 269 (283)
.|-.
T Consensus 79 ~ii~ 82 (89)
T 2dn5_A 79 VIIN 82 (89)
T ss_dssp EESS
T ss_pred EEEe
Confidence 8754
No 219
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Probab=25.09 E-value=92 Score=27.56 Aligned_cols=70 Identities=26% Similarity=0.272 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhcCCC------------hHHHHHHHHHHHHHhhcCc--hhhhhhh------------hcCcchHHHHHHH
Q 048589 29 DREAYAKLVFQLALD------------SHLSKRILAFWNWLETEGF--TNFVHES------------LKLTDSLRGLYGL 82 (283)
Q Consensus 29 dR~ly~rLV~~L~rd------------p~~S~~VmAlwLWLE~~G~--~n~i~~i------------~sl~d~~~~l~~l 82 (283)
.++.|.+|.-.+... -++--.+++|+-||+.... .+=+.++ +...|.+-||.++
T Consensus 80 ~~~~~~~L~~~l~~~~~yrY~~~~s~~lQE~VEA~~f~~yL~~~~L~t~eev~~~L~~~~~~~~~f~v~~edYLlGL~Dl 159 (240)
T 1j1j_A 80 VKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTEILGIEPDREKGFHLDVEDYLSGVLIL 159 (240)
T ss_dssp HHHHHHHHHHTSCGGGHHHHGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTCCCSSSSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccchHHHHhccccHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhCCCccccccCcCCHHHHHHHHHHH
Confidence 466777777655432 2455679999999997544 2333333 3456688889999
Q ss_pred HHH-HHHHhhhccCCCC
Q 048589 83 ALE-SALCLVCSDQESF 98 (283)
Q Consensus 83 A~E-A~~cL~cL~~~~~ 98 (283)
+.| ...|+|++...++
T Consensus 160 tGEL~R~avn~v~~Gd~ 176 (240)
T 1j1j_A 160 ASELSRLSVNSVTAGDY 176 (240)
T ss_dssp HHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHhcCCh
Confidence 999 7789999975543
No 220
>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} SCOP: a.4.5.30 PDB: 1onv_A
Probab=23.12 E-value=42 Score=25.73 Aligned_cols=57 Identities=16% Similarity=0.108 Sum_probs=31.8
Q ss_pred CCccCCHHHHHHHHHhhhCCceeeEEEeec--CCCCCceEEEEecChHH---HHHHhCCCCeeeEEEcCce
Q 048589 206 KGHPITRAELFEFFTRRYGEGCVEDIKMGN--CRDQSLYARVIVRSPAF---ITLILGENELMQFNIHGKD 271 (283)
Q Consensus 206 ~G~Pvse~Ei~~fFt~~~G~~cve~v~m~~--~~~qplfariVf~s~~~---vd~vL~g~~~~kf~Ingk~ 271 (283)
.-+||+||+|+.|+.+ .+ +..+| ..=.+. .-..++++. +..||---+..+-+|||+.
T Consensus 15 ~~~~iTEe~VRryL~r--kP-----mTT~dLl~KFK~r--~~~~~~~e~v~~~a~ILKki~p~qk~~~g~~ 76 (82)
T 1nha_A 15 GDVQVTEDAVRRYLTR--KP-----MTTKDLLKKFQTK--KTGLSSEQTVNVLAQILKRLNPERKMINDKM 76 (82)
T ss_dssp -CCCCCHHHHHHHHHH--SC-----BCHHHHHHHTTSS--CCSSCHHHHHHHHHHHHHHHCCEEEEETTEE
T ss_pred CCCCCCHHHHHHHHHh--CC-----ccHHHHHHHHHHh--cccCCCHHHHHHHHHHHHHcCHHhhccCCce
Confidence 4578999999999995 44 11222 000000 001244444 5566665556667888874
Done!