Query 048591
Match_columns 286
No_of_seqs 320 out of 2096
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 10:58:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048591.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048591hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.8E-50 8.3E-55 386.1 14.7 271 2-285 350-645 (889)
2 PLN03210 Resistant to P. syrin 100.0 6.9E-31 1.5E-35 263.7 12.3 257 2-285 383-684 (1153)
3 PF00931 NB-ARC: NB-ARC domain 99.7 3.1E-18 6.8E-23 148.1 1.0 91 2-95 190-283 (287)
4 KOG0617 Ras suppressor protein 99.3 1.1E-13 2.3E-18 107.0 -1.0 118 161-284 55-175 (264)
5 KOG0617 Ras suppressor protein 99.1 3.6E-12 7.8E-17 98.6 -3.0 120 160-283 77-197 (264)
6 KOG0444 Cytoskeletal regulator 99.1 1.3E-11 2.8E-16 112.5 -0.3 119 162-283 55-174 (1255)
7 PLN00113 leucine-rich repeat r 99.0 4.4E-10 9.6E-15 112.7 7.8 99 181-284 161-262 (968)
8 PLN00113 leucine-rich repeat r 99.0 4.3E-10 9.3E-15 112.8 6.9 120 161-285 163-287 (968)
9 KOG0444 Cytoskeletal regulator 99.0 4.6E-11 9.9E-16 109.0 -2.4 104 176-285 214-319 (1255)
10 PF13855 LRR_8: Leucine rich r 98.9 8.4E-10 1.8E-14 72.3 3.5 60 212-271 1-61 (61)
11 KOG0472 Leucine-rich repeat pr 98.9 7.3E-11 1.6E-15 102.4 -4.6 113 162-281 183-297 (565)
12 KOG0472 Leucine-rich repeat pr 98.8 3.8E-10 8.3E-15 98.0 -1.0 82 203-285 426-531 (565)
13 PF14580 LRR_9: Leucine-rich r 98.8 6.7E-09 1.5E-13 82.5 5.9 118 161-285 18-143 (175)
14 PLN03150 hypothetical protein; 98.8 9.7E-09 2.1E-13 97.9 7.2 92 185-281 419-513 (623)
15 KOG4194 Membrane glycoprotein 98.6 4.1E-08 8.8E-13 89.3 5.0 121 161-285 101-224 (873)
16 PLN03210 Resistant to P. syrin 98.6 8.6E-08 1.9E-12 97.6 7.8 110 161-278 588-701 (1153)
17 PF12799 LRR_4: Leucine Rich r 98.6 4.8E-08 1E-12 59.1 3.5 40 235-275 1-40 (44)
18 PF14580 LRR_9: Leucine-rich r 98.5 7.1E-08 1.5E-12 76.7 4.1 97 182-285 17-116 (175)
19 PF13855 LRR_8: Leucine rich r 98.5 7.2E-08 1.6E-12 63.0 2.8 60 184-247 1-61 (61)
20 PF12799 LRR_4: Leucine Rich r 98.5 1.3E-07 2.8E-12 57.3 2.9 41 212-252 1-41 (44)
21 PLN03150 hypothetical protein; 98.5 3.6E-07 7.9E-12 87.2 7.3 107 164-275 420-532 (623)
22 KOG1259 Nischarin, modulator o 98.4 3.3E-08 7.1E-13 83.3 -0.6 98 179-284 302-401 (490)
23 KOG4658 Apoptotic ATPase [Sign 98.4 4.3E-07 9.3E-12 89.1 6.7 97 182-285 521-621 (889)
24 KOG0618 Serine/threonine phosp 98.4 5.7E-08 1.2E-12 92.5 0.6 95 183-283 44-138 (1081)
25 KOG1259 Nischarin, modulator o 98.4 8E-08 1.7E-12 81.0 0.9 110 160-276 305-416 (490)
26 KOG0618 Serine/threonine phosp 98.4 3.4E-08 7.4E-13 93.9 -2.0 78 205-284 376-454 (1081)
27 PRK15370 E3 ubiquitin-protein 98.3 8.3E-07 1.8E-11 85.8 6.6 103 161-277 198-301 (754)
28 PRK15387 E3 ubiquitin-protein 98.3 1.1E-06 2.4E-11 84.8 5.9 87 185-283 383-470 (788)
29 KOG4194 Membrane glycoprotein 98.3 4.6E-07 1E-11 82.7 2.4 108 161-272 124-234 (873)
30 PRK15387 E3 ubiquitin-protein 98.2 1.5E-06 3.4E-11 83.8 5.0 67 212-285 382-448 (788)
31 KOG0532 Leucine-rich repeat (L 98.2 4.8E-07 1E-11 82.3 0.7 110 164-280 145-255 (722)
32 KOG0532 Leucine-rich repeat (L 98.2 4E-07 8.8E-12 82.7 0.1 114 164-285 123-237 (722)
33 PRK15370 E3 ubiquitin-protein 98.2 8.6E-07 1.9E-11 85.7 2.4 85 184-280 325-409 (754)
34 KOG4579 Leucine-rich repeat (L 98.0 1.4E-06 3.1E-11 65.4 0.8 90 183-277 52-141 (177)
35 cd00116 LRR_RI Leucine-rich re 98.0 3.5E-06 7.7E-11 73.6 3.4 109 163-272 109-234 (319)
36 COG4886 Leucine-rich repeat (L 98.0 3.1E-06 6.8E-11 76.5 3.1 91 185-281 141-231 (394)
37 COG4886 Leucine-rich repeat (L 98.0 3.7E-06 8E-11 76.0 3.2 94 182-281 114-208 (394)
38 cd00116 LRR_RI Leucine-rich re 97.9 1.1E-05 2.3E-10 70.6 4.5 111 161-272 80-206 (319)
39 KOG4237 Extracellular matrix p 97.9 4E-06 8.7E-11 73.2 0.9 97 184-284 67-166 (498)
40 KOG4579 Leucine-rich repeat (L 97.9 6.1E-06 1.3E-10 62.0 1.5 79 205-284 46-125 (177)
41 KOG3665 ZYG-1-like serine/thre 97.6 7E-05 1.5E-09 72.1 5.1 85 182-271 146-232 (699)
42 KOG4237 Extracellular matrix p 97.4 2.7E-05 5.9E-10 68.2 -1.3 113 160-276 65-181 (498)
43 PRK15386 type III secretion pr 97.3 0.00038 8.2E-09 62.4 5.7 104 163-281 53-182 (426)
44 KOG0531 Protein phosphatase 1, 97.3 0.00013 2.8E-09 66.6 1.9 104 161-272 94-199 (414)
45 KOG3665 ZYG-1-like serine/thre 97.2 0.00018 3.8E-09 69.3 2.2 98 184-285 122-223 (699)
46 KOG3207 Beta-tubulin folding c 97.2 0.00011 2.3E-09 65.3 0.4 89 182-275 220-317 (505)
47 PF00560 LRR_1: Leucine Rich R 97.1 0.00021 4.5E-09 36.2 0.9 18 237-254 2-19 (22)
48 PF00560 LRR_1: Leucine Rich R 97.1 0.00017 3.7E-09 36.5 0.5 22 260-281 1-22 (22)
49 KOG1644 U2-associated snRNP A' 97.1 0.00062 1.3E-08 54.7 3.8 102 163-269 43-150 (233)
50 KOG1909 Ran GTPase-activating 97.0 0.00078 1.7E-08 58.3 4.2 89 182-271 211-310 (382)
51 KOG3207 Beta-tubulin folding c 97.0 0.00022 4.7E-09 63.4 0.5 86 182-273 195-285 (505)
52 KOG1859 Leucine-rich repeat pr 96.9 0.00011 2.5E-09 69.1 -2.0 103 161-271 163-266 (1096)
53 KOG0531 Protein phosphatase 1, 96.9 0.00036 7.9E-09 63.6 1.0 89 180-276 91-179 (414)
54 PRK15386 type III secretion pr 96.8 0.00088 1.9E-08 60.1 3.0 84 182-282 50-138 (426)
55 KOG1859 Leucine-rich repeat pr 96.6 0.00019 4E-09 67.7 -2.5 91 186-284 166-256 (1096)
56 KOG2982 Uncharacterized conser 96.5 0.00085 1.8E-08 57.1 0.9 87 182-271 69-158 (418)
57 KOG2739 Leucine-rich acidic nu 96.5 0.0017 3.7E-08 54.1 2.7 111 163-275 44-159 (260)
58 KOG2982 Uncharacterized conser 96.3 0.0024 5.2E-08 54.4 2.1 92 188-285 49-149 (418)
59 PF13504 LRR_7: Leucine rich r 96.2 0.0027 5.8E-08 29.8 1.3 16 260-275 2-17 (17)
60 KOG2739 Leucine-rich acidic nu 96.2 0.0021 4.5E-08 53.6 1.3 84 182-273 41-130 (260)
61 PF13504 LRR_7: Leucine rich r 96.1 0.0031 6.7E-08 29.6 1.1 16 236-251 2-17 (17)
62 KOG1909 Ran GTPase-activating 95.9 0.01 2.2E-07 51.6 4.1 112 160-271 155-282 (382)
63 smart00369 LRR_TYP Leucine-ric 95.5 0.013 2.9E-07 30.7 2.2 20 259-278 2-21 (26)
64 smart00370 LRR Leucine-rich re 95.5 0.013 2.9E-07 30.7 2.2 20 259-278 2-21 (26)
65 KOG2123 Uncharacterized conser 95.3 0.0028 6.2E-08 53.5 -1.4 81 182-270 17-99 (388)
66 KOG1644 U2-associated snRNP A' 95.2 0.028 6.1E-07 45.4 4.2 84 184-274 42-128 (233)
67 smart00370 LRR Leucine-rich re 94.9 0.018 3.9E-07 30.1 1.7 21 234-254 1-21 (26)
68 smart00369 LRR_TYP Leucine-ric 94.9 0.018 3.9E-07 30.1 1.7 21 234-254 1-21 (26)
69 KOG0473 Leucine-rich repeat pr 94.9 0.0012 2.6E-08 54.3 -4.4 84 182-271 40-123 (326)
70 KOG0473 Leucine-rich repeat pr 94.8 0.00097 2.1E-08 54.8 -5.3 43 204-246 80-122 (326)
71 KOG2120 SCF ubiquitin ligase, 92.1 0.022 4.8E-07 48.8 -1.7 41 182-224 232-272 (419)
72 PF13306 LRR_5: Leucine rich r 91.8 0.83 1.8E-05 33.8 6.8 106 163-277 13-120 (129)
73 PF13306 LRR_5: Leucine rich r 91.5 0.35 7.5E-06 35.8 4.4 87 182-276 10-97 (129)
74 KOG2123 Uncharacterized conser 90.7 0.023 5E-07 48.2 -2.9 73 210-285 17-91 (388)
75 KOG2120 SCF ubiquitin ligase, 90.3 0.072 1.6E-06 45.7 -0.3 62 206-269 307-373 (419)
76 PRK04841 transcriptional regul 90.1 0.9 2E-05 45.7 7.2 119 2-143 213-332 (903)
77 smart00364 LRR_BAC Leucine-ric 89.2 0.2 4.3E-06 26.2 0.9 17 236-252 3-19 (26)
78 PF13516 LRR_6: Leucine Rich r 86.9 0.33 7.1E-06 24.6 0.9 13 259-271 2-14 (24)
79 smart00365 LRR_SD22 Leucine-ri 83.1 0.78 1.7E-05 24.0 1.2 14 235-248 2-15 (26)
80 COG5238 RNA1 Ran GTPase-activa 79.6 8.9 0.00019 32.9 6.9 89 182-271 118-226 (388)
81 KOG3864 Uncharacterized conser 75.9 0.93 2E-05 36.8 0.2 61 182-244 123-185 (221)
82 COG5238 RNA1 Ran GTPase-activa 75.8 1.8 3.9E-05 37.0 1.8 92 182-274 28-135 (388)
83 KOG3864 Uncharacterized conser 71.9 1.1 2.3E-05 36.5 -0.4 81 185-269 102-186 (221)
84 KOG4341 F-box protein containi 70.2 0.65 1.4E-05 41.8 -2.1 63 182-246 162-227 (483)
85 KOG1947 Leucine rich repeat pr 66.3 3.7 7.9E-05 37.7 1.9 88 182-270 212-306 (482)
86 smart00368 LRR_RI Leucine rich 64.8 5 0.00011 21.2 1.5 14 259-272 2-15 (28)
87 KOG4341 F-box protein containi 60.4 3.6 7.9E-05 37.2 0.6 64 206-270 366-437 (483)
88 PF14162 YozD: YozD-like prote 52.4 19 0.00041 22.1 2.6 28 89-116 22-51 (57)
89 smart00367 LRR_CC Leucine-rich 51.7 10 0.00022 19.4 1.3 15 258-272 1-16 (26)
90 KOG3763 mRNA export factor TAP 41.7 20 0.00043 33.8 2.3 64 182-248 216-283 (585)
91 PF13730 HTH_36: Helix-turn-he 39.5 88 0.0019 19.0 4.5 52 58-115 2-55 (55)
92 KOG1947 Leucine rich repeat pr 37.6 17 0.00037 33.2 1.3 84 182-268 241-330 (482)
93 PF00610 DEP: Domain found in 34.7 1.3E+02 0.0027 19.6 4.9 41 79-121 18-60 (74)
94 KOG4308 LRR-containing protein 32.5 2.6 5.5E-05 39.3 -5.0 88 183-271 203-302 (478)
95 cd04441 DEP_2_DEP6 DEP (Dishev 32.2 1.2E+02 0.0025 21.0 4.4 39 81-121 35-73 (85)
96 cd04440 DEP_2_P-Rex DEP (Dishe 32.2 1.2E+02 0.0026 21.4 4.5 39 81-121 40-78 (93)
97 PF02082 Rrf2: Transcriptional 31.7 1.1E+02 0.0024 20.6 4.3 49 65-120 12-60 (83)
98 PF15385 SARG: Specifically an 31.6 24 0.00052 32.9 1.2 16 55-70 7-22 (497)
99 cd04448 DEP_PIKfyve DEP (Dishe 31.2 1.3E+02 0.0027 20.5 4.4 39 81-121 31-69 (81)
100 cd04443 DEP_GPR155 DEP (Dishev 30.2 1.4E+02 0.003 20.5 4.5 39 80-120 32-70 (83)
101 PF12802 MarR_2: MarR family; 28.4 1.5E+02 0.0032 18.2 5.9 58 58-123 2-59 (62)
102 PF13463 HTH_27: Winged helix 26.4 96 0.0021 19.6 3.2 32 100-131 33-64 (68)
103 KOG4308 LRR-containing protein 25.8 5 0.00011 37.4 -4.3 65 184-248 144-217 (478)
104 PF07725 LRR_3: Leucine Rich R 25.6 35 0.00076 16.6 0.6 13 262-274 3-15 (20)
105 COG3432 Predicted transcriptio 25.5 2.1E+02 0.0045 20.3 4.7 39 97-138 43-81 (95)
106 cd04439 DEP_1_P-Rex DEP (Dishe 25.1 1.9E+02 0.004 19.7 4.4 40 80-121 30-69 (81)
107 cd04442 DEP_1_DEP6 DEP (Dishev 23.7 2E+02 0.0044 19.6 4.4 38 81-120 31-68 (82)
108 KOG3763 mRNA export factor TAP 22.4 61 0.0013 30.7 2.1 62 208-271 214-282 (585)
109 smart00049 DEP Domain found in 21.9 2.1E+02 0.0045 18.7 4.2 40 79-120 21-60 (77)
110 KOG4231 Intracellular membrane 21.0 21 0.00046 33.2 -1.1 53 214-267 106-158 (763)
111 cd04444 DEP_PLEK2 DEP (Disheve 20.7 1.4E+02 0.0031 21.7 3.2 38 82-121 35-72 (109)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-50 Score=386.06 Aligned_cols=271 Identities=27% Similarity=0.376 Sum_probs=228.3
Q ss_pred CCCccchhHHHHhhhhcCC--CcCCccchhhhhhccccccCcc--ccccchhhHHhhhccCCChhhHHHHhhhccCCCCc
Q 048591 2 ENGENVRLDIVPTGGPLRV--TYQGWPFLILYHGSISLEQNIE--EAIEGPMGRLTVISCKLPFHLKLCFLYLSVFPAHL 77 (286)
Q Consensus 2 ~kC~GlPLal~~ig~~L~~--~~~~W~~~~~~l~~~~~~~~~~--~~~~~i~~~L~~Sy~~L~~~~k~cFl~~a~Fp~~~ 77 (286)
+||+|||||++|+|+.|+. +..+|++ +.+.+.+....+ ...+.|+++|++|||.||+++|.||+|||+||+||
T Consensus 350 ~kC~GLPLAl~viG~~ma~K~t~~eW~~---~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~ 426 (889)
T KOG4658|consen 350 EKCGGLPLALNVLGGLLACKKTVQEWRR---ALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDY 426 (889)
T ss_pred HHhCChHHHHHHHHHHhcCCCcHHHHHH---HHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCccc
Confidence 5899999999999999999 8889999 666655552221 23478999999999999999999999999999999
Q ss_pred eeeHHHHHHHHHHccCCCC-----CHHHHHHHHHHHHHHCCCccccccCCCCCEeeEEcChhHHHHHHHhhc-----ccC
Q 048591 78 EISTRQLYHLWIAEGFIPD-----NSEATAEKYLEQLINRGFVKANKRRTGGTIHTCSIPCRCRPVLLAVAS-----EVE 147 (286)
Q Consensus 78 ~i~~~~li~~w~a~g~i~~-----~~~~~~~~~l~~L~~~~li~~~~~~~~~~~~~~~mhdlv~~l~~~i~~-----~~~ 147 (286)
.|++++|+.+|+||||+.+ ++++.|+.|+.+||++++++..+.. ++...|+|||+|||+|.++++ +++
T Consensus 427 ~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~ 504 (889)
T KOG4658|consen 427 EIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEEN 504 (889)
T ss_pred ccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccc
Confidence 9999999999999999976 8899999999999999999987754 666899999999999999999 666
Q ss_pred eEEeeeeec-----CCC--CCCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCC--CCCCCchhhhhhcCCCceEEEE
Q 048591 148 FIFLSFMVS-----ERK--SKKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKS--DHLDPIDWGIICLMLEFLRVLD 218 (286)
Q Consensus 148 ~~~~~~~~~-----~~~--~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~--~~~~~~~~~~~~~~l~~Lr~L~ 218 (286)
.+.. .+ .++ .+..+|++++..+...........++|+||.+.++.. .. ....+|..++.||+||
T Consensus 505 ~iv~---~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~----is~~ff~~m~~LrVLD 577 (889)
T KOG4658|consen 505 QIVS---DGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLE----ISGEFFRSLPLLRVLD 577 (889)
T ss_pred eEEE---CCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhh----cCHHHHhhCcceEEEE
Confidence 4433 22 011 5678999999998865443333778999999999863 22 4567799999999999
Q ss_pred eeCCC-CccCchhhccccccceeeeccccccccchhHhhCCCCccEEecCCCC-ccccchHHhhhhccC
Q 048591 219 LGSLV-LIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSY-IDHTADEFTLHARNT 285 (286)
Q Consensus 219 l~~~~-l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~-l~~lP~~i~~L~~~~ 285 (286)
|++|. +.++|++|++|.|||||+++++.++.||.++ ++|+.|.+||+..+. +..+|..+..|++|.
T Consensus 578 Ls~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l-~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 578 LSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGL-GNLKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred CCCCCccCcCChHHhhhhhhhcccccCCCccccchHH-HHHHhhheeccccccccccccchhhhccccc
Confidence 99887 8999999999999999999999999999999 999999999999985 455555555576653
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.97 E-value=6.9e-31 Score=263.65 Aligned_cols=257 Identities=17% Similarity=0.106 Sum_probs=170.3
Q ss_pred CCCccchhHHHHhhhhcCC-CcCCccchhhhhhccccccCccccccchhhHHhhhccCCCh-hhHHHHhhhccCCCCcee
Q 048591 2 ENGENVRLDIVPTGGPLRV-TYQGWPFLILYHGSISLEQNIEEAIEGPMGRLTVISCKLPF-HLKLCFLYLSVFPAHLEI 79 (286)
Q Consensus 2 ~kC~GlPLal~~ig~~L~~-~~~~W~~~~~~l~~~~~~~~~~~~~~~i~~~L~~Sy~~L~~-~~k~cFl~~a~Fp~~~~i 79 (286)
++|+|+||||+++|+.|++ +..+|+. +++++.+... .+|.++|++|||+|++ .+|.||+||||||.++.+
T Consensus 383 ~~c~GLPLAl~vlgs~L~~k~~~~W~~---~l~~L~~~~~-----~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~ 454 (1153)
T PLN03210 383 LRAGNLPLGLNVLGSYLRGRDKEDWMD---MLPRLRNGLD-----GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV 454 (1153)
T ss_pred HHhCCCcHHHHHHHHHHcCCCHHHHHH---HHHHHHhCcc-----HHHHHHHHHhhhccCccchhhhhheehhhcCCCCH
Confidence 4799999999999999999 9999999 7777766544 5799999999999987 599999999999998754
Q ss_pred eHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHCCCccccccCCCCCEeeEEcChhHHHHHHHhhcccCeE--Eeeeeec-
Q 048591 80 STRQLYHLWIAEGFIPDNSEATAEKYLEQLINRGFVKANKRRTGGTIHTCSIPCRCRPVLLAVASEVEFI--FLSFMVS- 156 (286)
Q Consensus 80 ~~~~li~~w~a~g~i~~~~~~~~~~~l~~L~~~~li~~~~~~~~~~~~~~~mhdlv~~l~~~i~~~~~~~--~~~~~~~- 156 (286)
+.+..|++.+... ++..++.|++++|++... ..++|||++|+||+.+++++... ..++...
T Consensus 455 ---~~v~~~l~~~~~~------~~~~l~~L~~ksLi~~~~-------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~ 518 (1153)
T PLN03210 455 ---NDIKLLLANSDLD------VNIGLKNLVDKSLIHVRE-------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDA 518 (1153)
T ss_pred ---HHHHHHHHhcCCC------chhChHHHHhcCCEEEcC-------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCH
Confidence 3577788776553 233488999999998753 35899999999999998765310 0000011
Q ss_pred --------CCCCCCCEEEEEEecCCCcc----cccCCCCCCeeEEEEecCCCCCCC------------------------
Q 048591 157 --------ERKSKKNVKRINVFYKQSDF----VHFVDDDSHMHSLLYFTSKSDHLD------------------------ 200 (286)
Q Consensus 157 --------~~~~~~~~r~l~l~~~~~~~----~~~~~~~~~Lr~L~l~~~~~~~~~------------------------ 200 (286)
.......++.+++....... ...+.++++|+.|.+..+......
T Consensus 519 ~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~ 598 (1153)
T PLN03210 519 KDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDK 598 (1153)
T ss_pred HHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecC
Confidence 11144566777665443221 112335666666655433211000
Q ss_pred --CchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeecccc-ccccchhHhhCCCCccEEecCCC-Cccccch
Q 048591 201 --PIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPS-LKILPSSLLSNLLNLYTLDMPFS-YIDHTAD 276 (286)
Q Consensus 201 --~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~-i~~LP~~i~~~L~~L~~L~l~~~-~l~~lP~ 276 (286)
...+|..+ .+.+|+.|++.++.++.+|..+..+++|++|+|+++. ++.+|. + +.+++|++|++.+| .+.++|.
T Consensus 599 ~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-l-s~l~~Le~L~L~~c~~L~~lp~ 675 (1153)
T PLN03210 599 YPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-L-SMATNLETLKLSDCSSLVELPS 675 (1153)
T ss_pred CCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-c-ccCCcccEEEecCCCCccccch
Confidence 00122222 3456666666666666666666677777777777653 566664 5 66777777777776 3466777
Q ss_pred HHhhhhccC
Q 048591 277 EFTLHARNT 285 (286)
Q Consensus 277 ~i~~L~~~~ 285 (286)
.+++|++|+
T Consensus 676 si~~L~~L~ 684 (1153)
T PLN03210 676 SIQYLNKLE 684 (1153)
T ss_pred hhhccCCCC
Confidence 766666553
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.69 E-value=3.1e-18 Score=148.06 Aligned_cols=91 Identities=30% Similarity=0.480 Sum_probs=76.3
Q ss_pred CCCccchhHHHHhhhhcCC--CcCCccchhhhhhccccccCcc-ccccchhhHHhhhccCCChhhHHHHhhhccCCCCce
Q 048591 2 ENGENVRLDIVPTGGPLRV--TYQGWPFLILYHGSISLEQNIE-EAIEGPMGRLTVISCKLPFHLKLCFLYLSVFPAHLE 78 (286)
Q Consensus 2 ~kC~GlPLal~~ig~~L~~--~~~~W~~~~~~l~~~~~~~~~~-~~~~~i~~~L~~Sy~~L~~~~k~cFl~~a~Fp~~~~ 78 (286)
++|+|+||||+++|++|+. +.++|+. +++++.+..... .....+..++.+||+.||+++|+||+|||+||+++.
T Consensus 190 ~~c~glPLal~~~a~~l~~~~~~~~w~~---~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~ 266 (287)
T PF00931_consen 190 EKCGGLPLALKLIASYLRSKSTVDEWEE---ALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVP 266 (287)
T ss_dssp HHTTT-HHHHHHHHHHHHHHHSSSSHHH---HHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-
T ss_pred cccccccccccccccccccccccccccc---ccccccccccccccccccccccceechhcCCccHHHHHhhCcCCCCCce
Confidence 4799999999999999977 8999999 665554444321 124679999999999999999999999999999999
Q ss_pred eeHHHHHHHHHHccCCC
Q 048591 79 ISTRQLYHLWIAEGFIP 95 (286)
Q Consensus 79 i~~~~li~~w~a~g~i~ 95 (286)
|+++.++++|+++|||.
T Consensus 267 i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 267 IPRERLIRLWVAEGFIS 283 (287)
T ss_dssp EEHHHHHHHHTT-HHTC
T ss_pred ECHHHHHHHHHHCCCCc
Confidence 99999999999999986
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.33 E-value=1.1e-13 Score=107.02 Aligned_cols=118 Identities=21% Similarity=0.133 Sum_probs=88.4
Q ss_pred CCCEEEEEEecCCC-cccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCc--cCchhhcccccc
Q 048591 161 KKNVKRINVFYKQS-DFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI--QYPSGIENLFLL 237 (286)
Q Consensus 161 ~~~~r~l~l~~~~~-~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~--~lp~~i~~L~~L 237 (286)
..++..+.+..+.. +.+..+..+++||.|.+..+... ..|..|++++-|++|||++|.+. .+|..+..+..|
T Consensus 55 l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-----~lprgfgs~p~levldltynnl~e~~lpgnff~m~tl 129 (264)
T KOG0617|consen 55 LKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-----ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTL 129 (264)
T ss_pred hhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-----cCccccCCCchhhhhhccccccccccCCcchhHHHHH
Confidence 34455556666553 35555557778888877766665 56778888888888888888865 677777778888
Q ss_pred ceeeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhcc
Q 048591 238 RYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARN 284 (286)
Q Consensus 238 ~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~ 284 (286)
|-|.|+.|.++-+|..+ |+|++||.|.+++|.+-++|..++.|+++
T Consensus 130 ralyl~dndfe~lp~dv-g~lt~lqil~lrdndll~lpkeig~lt~l 175 (264)
T KOG0617|consen 130 RALYLGDNDFEILPPDV-GKLTNLQILSLRDNDLLSLPKEIGDLTRL 175 (264)
T ss_pred HHHHhcCCCcccCChhh-hhhcceeEEeeccCchhhCcHHHHHHHHH
Confidence 88888888888888888 88888888888888888888888887765
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.10 E-value=3.6e-12 Score=98.63 Aligned_cols=120 Identities=18% Similarity=0.113 Sum_probs=106.2
Q ss_pred CCCCEEEEEEecCC-CcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccc
Q 048591 160 SKKNVKRINVFYKQ-SDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLR 238 (286)
Q Consensus 160 ~~~~~r~l~l~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~ 238 (286)
...++|++.+..+. ...+..++.++.|+.|++..+..... .+|..|-.+..||.|.|+.|.++-+|..+|+|++|+
T Consensus 77 sl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~---~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lq 153 (264)
T KOG0617|consen 77 SLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNEN---SLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQ 153 (264)
T ss_pred hchhhhheecchhhhhcCccccCCCchhhhhhccccccccc---cCCcchhHHHHHHHHHhcCCCcccCChhhhhhccee
Confidence 45678888887766 34667788999999999988877543 567778889999999999999999999999999999
Q ss_pred eeeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhc
Q 048591 239 YLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHAR 283 (286)
Q Consensus 239 ~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~ 283 (286)
.|.++.|.+-++|..| |.|..|+.|.+.+|++..+|+.++++..
T Consensus 154 il~lrdndll~lpkei-g~lt~lrelhiqgnrl~vlppel~~l~l 197 (264)
T KOG0617|consen 154 ILSLRDNDLLSLPKEI-GDLTRLRELHIQGNRLTVLPPELANLDL 197 (264)
T ss_pred EEeeccCchhhCcHHH-HHHHHHHHHhcccceeeecChhhhhhhh
Confidence 9999999999999999 9999999999999999999999998754
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.09 E-value=1.3e-11 Score=112.47 Aligned_cols=119 Identities=18% Similarity=0.200 Sum_probs=67.9
Q ss_pred CCEEEEEEecCC-CcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhcccccccee
Q 048591 162 KNVKRINVFYKQ-SDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYL 240 (286)
Q Consensus 162 ~~~r~l~l~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L 240 (286)
.++.|+++..|. ..+...+..++.||++++..|+.... .+|+.+-.+..|.+|||+.|++.+.|..+..-+++-.|
T Consensus 55 qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKns---GiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNS---GIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVL 131 (1255)
T ss_pred hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccC---CCCchhcccccceeeecchhhhhhcchhhhhhcCcEEE
Confidence 345555555444 22333333566666666666555332 34445555666666666666666666666666666666
Q ss_pred eeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhc
Q 048591 241 KLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHAR 283 (286)
Q Consensus 241 ~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~ 283 (286)
+||+|+|..+|.++|-+|+-|-.|||++|++..+|+.+.+|..
T Consensus 132 NLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~ 174 (1255)
T KOG0444|consen 132 NLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSM 174 (1255)
T ss_pred EcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhh
Confidence 6666666666666555666666666666666666665555543
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.03 E-value=4.4e-10 Score=112.73 Aligned_cols=99 Identities=18% Similarity=0.158 Sum_probs=52.9
Q ss_pred CCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCc-cCchhhccccccceeeecccccc-ccchhHhhCC
Q 048591 181 DDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-QYPSGIENLFLLRYLKLNIPSLK-ILPSSLLSNL 258 (286)
Q Consensus 181 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~~L~~L~L~~~~i~-~LP~~i~~~L 258 (286)
+.+++|+.|.+.++.... ..|..+.++++|++|++++|.+. .+|..++++++|++|++++|++. .+|..+ +++
T Consensus 161 ~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l 235 (968)
T PLN00113 161 GSFSSLKVLDLGGNVLVG----KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI-GGL 235 (968)
T ss_pred hcCCCCCEEECccCcccc----cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhH-hcC
Confidence 344555555555544432 33444555555555555555543 44555555555555555555543 455555 566
Q ss_pred CCccEEecCCCCc-cccchHHhhhhcc
Q 048591 259 LNLYTLDMPFSYI-DHTADEFTLHARN 284 (286)
Q Consensus 259 ~~L~~L~l~~~~l-~~lP~~i~~L~~~ 284 (286)
++|++|++++|++ ..+|..++++++|
T Consensus 236 ~~L~~L~L~~n~l~~~~p~~l~~l~~L 262 (968)
T PLN00113 236 TSLNHLDLVYNNLTGPIPSSLGNLKNL 262 (968)
T ss_pred CCCCEEECcCceeccccChhHhCCCCC
Confidence 6666666666555 3455555555544
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.02 E-value=4.3e-10 Score=112.84 Aligned_cols=120 Identities=18% Similarity=0.078 Sum_probs=81.9
Q ss_pred CCCEEEEEEecCCC--cccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCc-cCchhhcccccc
Q 048591 161 KKNVKRINVFYKQS--DFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-QYPSGIENLFLL 237 (286)
Q Consensus 161 ~~~~r~l~l~~~~~--~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~~L 237 (286)
..+++.+.+..+.. ..+..+.++++|++|.+.++.... ..|..+.++++|+.|++++|.+. .+|..++.+++|
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 238 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG----QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL 238 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcC----cCChHHcCcCCccEEECcCCccCCcCChhHhcCCCC
Confidence 45666677666652 344445567777777777776654 45566777777777777777765 677777777777
Q ss_pred ceeeecccccc-ccchhHhhCCCCccEEecCCCCc-cccchHHhhhhccC
Q 048591 238 RYLKLNIPSLK-ILPSSLLSNLLNLYTLDMPFSYI-DHTADEFTLHARNT 285 (286)
Q Consensus 238 ~~L~L~~~~i~-~LP~~i~~~L~~L~~L~l~~~~l-~~lP~~i~~L~~~~ 285 (286)
++|++++|.+. .+|.++ +++++|++|++++|.+ ..+|..++++++|+
T Consensus 239 ~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 287 (968)
T PLN00113 239 NHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLI 287 (968)
T ss_pred CEEECcCceeccccChhH-hCCCCCCEEECcCCeeeccCchhHhhccCcC
Confidence 77777777754 567777 7777777777777766 56777777666654
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.96 E-value=4.6e-11 Score=108.97 Aligned_cols=104 Identities=15% Similarity=0.073 Sum_probs=85.8
Q ss_pred ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHh
Q 048591 176 FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLL 255 (286)
Q Consensus 176 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~ 255 (286)
+|.++..+.+|+-++++.|... ..|..+-++++||.|+|++|.++++-..++...+|+.|++|.|.+..||..+
T Consensus 214 ~Ptsld~l~NL~dvDlS~N~Lp-----~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~av- 287 (1255)
T KOG0444|consen 214 IPTSLDDLHNLRDVDLSENNLP-----IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAV- 287 (1255)
T ss_pred CCCchhhhhhhhhccccccCCC-----cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHH-
Confidence 4555557778888888877775 5778888888888888888888888888888888888888888888889888
Q ss_pred hCCCCccEEecCCCCc--cccchHHhhhhccC
Q 048591 256 SNLLNLYTLDMPFSYI--DHTADEFTLHARNT 285 (286)
Q Consensus 256 ~~L~~L~~L~l~~~~l--~~lP~~i~~L~~~~ 285 (286)
++|+.|+.|.+.+|++ ..+|++||+|..|+
T Consensus 288 cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le 319 (1255)
T KOG0444|consen 288 CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE 319 (1255)
T ss_pred hhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence 8888888888888865 78888888888775
No 10
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.93 E-value=8.4e-10 Score=72.27 Aligned_cols=60 Identities=33% Similarity=0.393 Sum_probs=53.6
Q ss_pred CceEEEEeeCCCCccCc-hhhccccccceeeeccccccccchhHhhCCCCccEEecCCCCc
Q 048591 212 EFLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYI 271 (286)
Q Consensus 212 ~~Lr~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l 271 (286)
++|+.|++++|.++.+| ..+..+++|++|++++|.++.+|+..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46899999999999888 5678899999999999999999886669999999999999875
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.86 E-value=7.3e-11 Score=102.39 Aligned_cols=113 Identities=18% Similarity=0.110 Sum_probs=56.9
Q ss_pred CCEEEEEEecCC-CcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhc-cccccce
Q 048591 162 KNVKRINVFYKQ-SDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIE-NLFLLRY 239 (286)
Q Consensus 162 ~~~r~l~l~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~-~L~~L~~ 239 (286)
+.+.++....+. ...|+.++.+.+|.-|++..+.... .| .|.++..|..|++..|.++.+|..++ +|.+|..
T Consensus 183 ~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~-----lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~v 256 (565)
T KOG0472|consen 183 KRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRF-----LP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLV 256 (565)
T ss_pred HHHHhcccchhhhhcCChhhcchhhhHHHHhhhccccc-----CC-CCCccHHHHHHHhcccHHHhhHHHHhccccccee
Confidence 334455554444 3355555566666666666666542 22 44444444444444444444444444 4445555
Q ss_pred eeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhh
Q 048591 240 LKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLH 281 (286)
Q Consensus 240 L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L 281 (286)
|||+.|+++++|..+ +.|++|++||+++|.+..+|.++|+|
T Consensus 257 LDLRdNklke~Pde~-clLrsL~rLDlSNN~is~Lp~sLgnl 297 (565)
T KOG0472|consen 257 LDLRDNKLKEVPDEI-CLLRSLERLDLSNNDISSLPYSLGNL 297 (565)
T ss_pred eeccccccccCchHH-HHhhhhhhhcccCCccccCCcccccc
Confidence 555555555555555 55555555555555555555444444
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.83 E-value=3.8e-10 Score=98.01 Aligned_cols=82 Identities=26% Similarity=0.297 Sum_probs=53.7
Q ss_pred hhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccc-----------------------hh-HhhCC
Q 048591 203 DWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILP-----------------------SS-LLSNL 258 (286)
Q Consensus 203 ~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP-----------------------~~-i~~~L 258 (286)
.++..++.+++|..|+|++|.+..+|..++.+..||.|+++.|+++.+| .+ + +++
T Consensus 426 fv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l-~nm 504 (565)
T KOG0472|consen 426 FVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGL-KNM 504 (565)
T ss_pred cchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHh-hhh
Confidence 3455556666666666666666666666666666666666655544333 33 5 677
Q ss_pred CCccEEecCCCCccccchHHhhhhccC
Q 048591 259 LNLYTLDMPFSYIDHTADEFTLHARNT 285 (286)
Q Consensus 259 ~~L~~L~l~~~~l~~lP~~i~~L~~~~ 285 (286)
.+|.+||+.+|.+..+|+.+|++++++
T Consensus 505 ~nL~tLDL~nNdlq~IPp~LgnmtnL~ 531 (565)
T KOG0472|consen 505 RNLTTLDLQNNDLQQIPPILGNMTNLR 531 (565)
T ss_pred hhcceeccCCCchhhCChhhcccccee
Confidence 778888888888888888888877665
No 13
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.82 E-value=6.7e-09 Score=82.51 Aligned_cols=118 Identities=18% Similarity=0.108 Sum_probs=48.6
Q ss_pred CCCEEEEEEecCCCcccccCC-CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhc-cccccc
Q 048591 161 KKNVKRINVFYKQSDFVHFVD-DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIE-NLFLLR 238 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~-~L~~L~ 238 (286)
+.+.|.+.+.++.....+.++ .+.+|+.|++.+|..... +.+..++.|+.|++++|.++.+++.+. .+++|+
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l------~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL------EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S--------TT----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred ccccccccccccccccccchhhhhcCCCEEECCCCCCccc------cCccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 345688999998877776665 578999999999998642 357789999999999999999876653 689999
Q ss_pred eeeeccccccccch--hHhhCCCCccEEecCCCCccccch----HHhhhhccC
Q 048591 239 YLKLNIPSLKILPS--SLLSNLLNLYTLDMPFSYIDHTAD----EFTLHARNT 285 (286)
Q Consensus 239 ~L~L~~~~i~~LP~--~i~~~L~~L~~L~l~~~~l~~lP~----~i~~L~~~~ 285 (286)
.|++++|+|..+-. .+ ..+++|+.|++.+|.+.+.|. -|..+|+|.
T Consensus 92 ~L~L~~N~I~~l~~l~~L-~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk 143 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPL-SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLK 143 (175)
T ss_dssp EEE-TTS---SCCCCGGG-GG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-S
T ss_pred EEECcCCcCCChHHhHHH-HcCCCcceeeccCCcccchhhHHHHHHHHcChhh
Confidence 99999998876533 45 789999999999998865553 355666553
No 14
>PLN03150 hypothetical protein; Provisional
Probab=98.80 E-value=9.7e-09 Score=97.87 Aligned_cols=92 Identities=16% Similarity=0.146 Sum_probs=79.9
Q ss_pred CeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCc-cCchhhccccccceeeecccccc-ccchhHhhCCCCcc
Q 048591 185 HMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-QYPSGIENLFLLRYLKLNIPSLK-ILPSSLLSNLLNLY 262 (286)
Q Consensus 185 ~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~~L~~L~L~~~~i~-~LP~~i~~~L~~L~ 262 (286)
.++.|.+.++...+ .++..+..+++|+.|+|++|.+. .+|..++.+++|++|+|++|++. .+|.++ ++|++|+
T Consensus 419 ~v~~L~L~~n~L~g----~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l-~~L~~L~ 493 (623)
T PLN03150 419 FIDGLGLDNQGLRG----FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL-GQLTSLR 493 (623)
T ss_pred EEEEEECCCCCccc----cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH-hcCCCCC
Confidence 37778888877765 56778899999999999999987 88989999999999999999987 789999 9999999
Q ss_pred EEecCCCCc-cccchHHhhh
Q 048591 263 TLDMPFSYI-DHTADEFTLH 281 (286)
Q Consensus 263 ~L~l~~~~l-~~lP~~i~~L 281 (286)
+|+|++|++ ..+|..++.+
T Consensus 494 ~L~Ls~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 494 ILNLNGNSLSGRVPAALGGR 513 (623)
T ss_pred EEECcCCcccccCChHHhhc
Confidence 999999988 6899888764
No 15
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.62 E-value=4.1e-08 Score=89.34 Aligned_cols=121 Identities=17% Similarity=0.153 Sum_probs=71.7
Q ss_pred CCCEEEEEEecCCCc-ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc-hhhccccccc
Q 048591 161 KKNVKRINVFYKQSD-FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLR 238 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~ 238 (286)
..+++.+.+..|... +|...+...+++.|.+.+|.+.. .-.+.+..++.||+|||+.|.++++| +++..-.+++
T Consensus 101 l~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~s----v~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~ 176 (873)
T KOG4194|consen 101 LPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISS----VTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIK 176 (873)
T ss_pred CCcceeeeeccchhhhcccccccccceeEEeeecccccc----ccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCce
Confidence 445566666666533 44444355567777777777665 33456666777777777777776665 3444445666
Q ss_pred eeeeccccccccchhHhhCCCCccEEecCCCCccccchHHhh-hhccC
Q 048591 239 YLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTL-HARNT 285 (286)
Q Consensus 239 ~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~-L~~~~ 285 (286)
+|+|++|+|..+-..-|..|.+|.+|.|+.|++..+|..+.+ |++|+
T Consensus 177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~ 224 (873)
T KOG4194|consen 177 KLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLE 224 (873)
T ss_pred EEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhh
Confidence 666666666655443335566666666666666666654333 55543
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.61 E-value=8.6e-08 Score=97.65 Aligned_cols=110 Identities=23% Similarity=0.104 Sum_probs=62.8
Q ss_pred CCCEEEEEEecCCC-cccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCC-CccCchhhccccccc
Q 048591 161 KKNVKRINVFYKQS-DFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLV-LIQYPSGIENLFLLR 238 (286)
Q Consensus 161 ~~~~r~l~l~~~~~-~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l~~lp~~i~~L~~L~ 238 (286)
+.++|.+.+..+.. ..|..+ ...+|+.|.+.++... .++..+..+++|+.|+|+++. +..+| .++.+++|+
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~-----~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le 660 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE-----KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLE 660 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc-----ccccccccCCCCCEEECCCCCCcCcCC-ccccCCccc
Confidence 44566666665542 233333 4566666666665543 233344556666666666554 45555 355666666
Q ss_pred eeeecccc-ccccchhHhhCCCCccEEecCCC-CccccchHH
Q 048591 239 YLKLNIPS-LKILPSSLLSNLLNLYTLDMPFS-YIDHTADEF 278 (286)
Q Consensus 239 ~L~L~~~~-i~~LP~~i~~~L~~L~~L~l~~~-~l~~lP~~i 278 (286)
+|++++|. +..+|.++ ++|++|+.|++++| .+..+|.++
T Consensus 661 ~L~L~~c~~L~~lp~si-~~L~~L~~L~L~~c~~L~~Lp~~i 701 (1153)
T PLN03210 661 TLKLSDCSSLVELPSSI-QYLNKLEDLDMSRCENLEILPTGI 701 (1153)
T ss_pred EEEecCCCCccccchhh-hccCCCCEEeCCCCCCcCccCCcC
Confidence 66666653 55666666 66666666666665 345566543
No 17
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.60 E-value=4.8e-08 Score=59.12 Aligned_cols=40 Identities=35% Similarity=0.346 Sum_probs=28.2
Q ss_pred cccceeeeccccccccchhHhhCCCCccEEecCCCCccccc
Q 048591 235 FLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTA 275 (286)
Q Consensus 235 ~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP 275 (286)
++|++|++++|+|+.+|..+ ++|++|++|++++|++.++|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l-~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPEL-SNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHG-TTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchH-hCCCCCCEEEecCCCCCCCc
Confidence 35777777777777777777 77777777777777776665
No 18
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.54 E-value=7.1e-08 Score=76.65 Aligned_cols=97 Identities=20% Similarity=0.178 Sum_probs=35.2
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhc-CCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCC
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICL-MLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLN 260 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~-~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~ 260 (286)
+..+++.|.+.++.+.. + +.++ .+.+|++|++++|.++.++ .+..+++|+.|++++|+|+.+++.+...+++
T Consensus 17 n~~~~~~L~L~~n~I~~-----I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-----I-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPN 89 (175)
T ss_dssp -------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT
T ss_pred ccccccccccccccccc-----c-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCc
Confidence 56678999999998863 2 2344 5789999999999999886 6888999999999999999998766246899
Q ss_pred ccEEecCCCCccccc--hHHhhhhccC
Q 048591 261 LYTLDMPFSYIDHTA--DEFTLHARNT 285 (286)
Q Consensus 261 L~~L~l~~~~l~~lP--~~i~~L~~~~ 285 (286)
|+.|++++|++.++- ..+..+++|+
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~ 116 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLR 116 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcc
Confidence 999999999875543 2344555543
No 19
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.51 E-value=7.2e-08 Score=62.98 Aligned_cols=60 Identities=30% Similarity=0.226 Sum_probs=52.8
Q ss_pred CCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc-hhhccccccceeeeccccc
Q 048591 184 SHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSL 247 (286)
Q Consensus 184 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~i 247 (286)
|+|++|.+.++.... ..+..|..+++|++|++++|.++.+| ..+..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~----i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTE----IPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESE----ECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCc----cCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 578999999998765 55678999999999999999999887 4779999999999999975
No 20
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.47 E-value=1.3e-07 Score=57.26 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=35.7
Q ss_pred CceEEEEeeCCCCccCchhhccccccceeeeccccccccch
Q 048591 212 EFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPS 252 (286)
Q Consensus 212 ~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~ 252 (286)
++|++|++++|.++.+|..+++|++|++|++++|+|+.+|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 47899999999999999889999999999999999987764
No 21
>PLN03150 hypothetical protein; Provisional
Probab=98.46 E-value=3.6e-07 Score=87.20 Aligned_cols=107 Identities=18% Similarity=0.133 Sum_probs=87.9
Q ss_pred EEEEEEecCCC--cccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCc-cCchhhcccccccee
Q 048591 164 VKRINVFYKQS--DFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-QYPSGIENLFLLRYL 240 (286)
Q Consensus 164 ~r~l~l~~~~~--~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~~L~~L 240 (286)
++.+.+..+.. ..+..+..+++|+.|.+.+|...+ .+|..+..+++|+.|+|++|.+. .+|..++++++|++|
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g----~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG----NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC----cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 56666666553 355556689999999999998876 57788999999999999999987 899999999999999
Q ss_pred eecccccc-ccchhHhhCC-CCccEEecCCCC-ccccc
Q 048591 241 KLNIPSLK-ILPSSLLSNL-LNLYTLDMPFSY-IDHTA 275 (286)
Q Consensus 241 ~L~~~~i~-~LP~~i~~~L-~~L~~L~l~~~~-l~~lP 275 (286)
+|++|.+. .+|..+ +.+ .++..+++.+|. +...|
T Consensus 496 ~Ls~N~l~g~iP~~l-~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 496 NLNGNSLSGRVPAAL-GGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred ECcCCcccccCChHH-hhccccCceEEecCCccccCCC
Confidence 99999976 899998 764 578899999884 33344
No 22
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.43 E-value=3.3e-08 Score=83.29 Aligned_cols=98 Identities=20% Similarity=0.158 Sum_probs=57.9
Q ss_pred cCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCC
Q 048591 179 FVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNL 258 (286)
Q Consensus 179 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L 258 (286)
++.-.|++|.|+++.|.... -..+..+++|..|||++|.+.++-..-.+|-+.+.|.|.+|.|+.| +.+ ++|
T Consensus 302 SvKL~Pkir~L~lS~N~i~~------v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L-SGL-~KL 373 (490)
T KOG1259|consen 302 SVKLAPKLRRLILSQNRIRT------VQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL-SGL-RKL 373 (490)
T ss_pred hhhhccceeEEeccccceee------ehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhh-hhh-Hhh
Confidence 33345777777777777642 1336677777778888777665544333444555555555555555 234 666
Q ss_pred CCccEEecCCCCccccc--hHHhhhhcc
Q 048591 259 LNLYTLDMPFSYIDHTA--DEFTLHARN 284 (286)
Q Consensus 259 ~~L~~L~l~~~~l~~lP--~~i~~L~~~ 284 (286)
++|..||+++|+++++- .+||+||.|
T Consensus 374 YSLvnLDl~~N~Ie~ldeV~~IG~LPCL 401 (490)
T KOG1259|consen 374 YSLVNLDLSSNQIEELDEVNHIGNLPCL 401 (490)
T ss_pred hhheeccccccchhhHHHhcccccccHH
Confidence 66666666666654443 245555543
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.42 E-value=4.3e-07 Score=89.15 Aligned_cols=97 Identities=26% Similarity=0.250 Sum_probs=78.4
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCC--CccCchh-hccccccceeeecccc-ccccchhHhhC
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLV--LIQYPSG-IENLFLLRYLKLNIPS-LKILPSSLLSN 257 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--l~~lp~~-i~~L~~L~~L~L~~~~-i~~LP~~i~~~ 257 (286)
.....|...+.++..... ..-...+.|+.|-+.++. +..++.. +..+++|++|||++|. +.+||++| ++
T Consensus 521 ~~~~~rr~s~~~~~~~~~------~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~ 593 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHI------AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GE 593 (889)
T ss_pred chhheeEEEEeccchhhc------cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hh
Confidence 556788888888776432 112233468888888886 6666644 7779999999999885 89999999 99
Q ss_pred CCCccEEecCCCCccccchHHhhhhccC
Q 048591 258 LLNLYTLDMPFSYIDHTADEFTLHARNT 285 (286)
Q Consensus 258 L~~L~~L~l~~~~l~~lP~~i~~L~~~~ 285 (286)
|-+|++|+++++.+..+|.++++|.+|.
T Consensus 594 Li~LryL~L~~t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 594 LVHLRYLDLSDTGISHLPSGLGNLKKLI 621 (889)
T ss_pred hhhhhcccccCCCccccchHHHHHHhhh
Confidence 9999999999999999999999998763
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.42 E-value=5.7e-08 Score=92.48 Aligned_cols=95 Identities=27% Similarity=0.343 Sum_probs=84.0
Q ss_pred CCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCcc
Q 048591 183 DSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLY 262 (286)
Q Consensus 183 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~ 262 (286)
.-+|++|++.++... .+|..+..+.+|+.|.++.|.+.++|.+++++.+|+||.|.+|.+..+|.++ ..+++|+
T Consensus 44 ~v~L~~l~lsnn~~~-----~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~-~~lknl~ 117 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQIS-----SFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASI-SELKNLQ 117 (1081)
T ss_pred eeeeEEeeccccccc-----cCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhH-Hhhhccc
Confidence 445999999998886 4667788889999999999999999999999999999999999999999999 9999999
Q ss_pred EEecCCCCccccchHHhhhhc
Q 048591 263 TLDMPFSYIDHTADEFTLHAR 283 (286)
Q Consensus 263 ~L~l~~~~l~~lP~~i~~L~~ 283 (286)
+|+++.|.+..+|.-|..++.
T Consensus 118 ~LdlS~N~f~~~Pl~i~~lt~ 138 (1081)
T KOG0618|consen 118 YLDLSFNHFGPIPLVIEVLTA 138 (1081)
T ss_pred ccccchhccCCCchhHHhhhH
Confidence 999999999989987766653
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.39 E-value=8e-08 Score=80.99 Aligned_cols=110 Identities=17% Similarity=0.151 Sum_probs=93.9
Q ss_pred CCCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccce
Q 048591 160 SKKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRY 239 (286)
Q Consensus 160 ~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~ 239 (286)
...++|.+.++.|.......+..+++|..|++++|.... ....-.++-+++.|.|++|.++.+. .+++|-+|.+
T Consensus 305 L~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~-----~~Gwh~KLGNIKtL~La~N~iE~LS-GL~KLYSLvn 378 (490)
T KOG1259|consen 305 LAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAE-----CVGWHLKLGNIKTLKLAQNKIETLS-GLRKLYSLVN 378 (490)
T ss_pred hccceeEEeccccceeeehhhhhcccceEeecccchhHh-----hhhhHhhhcCEeeeehhhhhHhhhh-hhHhhhhhee
Confidence 456899999998887766667789999999999998863 4455567889999999999998774 7899999999
Q ss_pred eeeccccccccc--hhHhhCCCCccEEecCCCCccccch
Q 048591 240 LKLNIPSLKILP--SSLLSNLLNLYTLDMPFSYIDHTAD 276 (286)
Q Consensus 240 L~L~~~~i~~LP--~~i~~~L~~L~~L~l~~~~l~~lP~ 276 (286)
||+++|+|+++- .+| |+|+.|+++.+.+|.+..+|+
T Consensus 379 LDl~~N~Ie~ldeV~~I-G~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 379 LDLSSNQIEELDEVNHI-GNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred ccccccchhhHHHhccc-ccccHHHHHhhcCCCccccch
Confidence 999999999774 479 999999999999999888775
No 26
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.37 E-value=3.4e-08 Score=93.92 Aligned_cols=78 Identities=26% Similarity=0.239 Sum_probs=64.0
Q ss_pred hhhhcCCCceEEEEeeCCCCccCc-hhhccccccceeeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhc
Q 048591 205 GIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHAR 283 (286)
Q Consensus 205 ~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~ 283 (286)
-+.+.++++||+|+|++|++.++| ..+.++..|+.|+||||+++.||.++ .++..|++|...+|++..+| .+.+++.
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tv-a~~~~L~tL~ahsN~l~~fP-e~~~l~q 453 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTV-ANLGRLHTLRAHSNQLLSFP-ELAQLPQ 453 (1081)
T ss_pred hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHH-HhhhhhHHHhhcCCceeech-hhhhcCc
Confidence 356778888999999999888888 45778888888999999888888888 88888888888888888888 6776665
Q ss_pred c
Q 048591 284 N 284 (286)
Q Consensus 284 ~ 284 (286)
+
T Consensus 454 L 454 (1081)
T KOG0618|consen 454 L 454 (1081)
T ss_pred c
Confidence 5
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.34 E-value=8.3e-07 Score=85.82 Aligned_cols=103 Identities=12% Similarity=0.123 Sum_probs=71.2
Q ss_pred CCCEEEEEEecCCCc-ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccce
Q 048591 161 KKNVKRINVFYKQSD-FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRY 239 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~ 239 (286)
+..++.+.+..+... ++... .++|++|.+.+|.... +|..+. .+|+.|++++|.+..+|..+. .+|++
T Consensus 198 p~~L~~L~Ls~N~LtsLP~~l--~~nL~~L~Ls~N~Lts-----LP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~ 266 (754)
T PRK15370 198 PEQITTLILDNNELKSLPENL--QGNIKTLYANSNQLTS-----IPATLP--DTIQEMELSINRITELPERLP--SALQS 266 (754)
T ss_pred ccCCcEEEecCCCCCcCChhh--ccCCCEEECCCCcccc-----CChhhh--ccccEEECcCCccCcCChhHh--CCCCE
Confidence 445677777766643 33222 3578888887776653 233222 367888888888888887664 47888
Q ss_pred eeeccccccccchhHhhCCCCccEEecCCCCccccchH
Q 048591 240 LKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADE 277 (286)
Q Consensus 240 L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~ 277 (286)
|++++|++..+|..+ . .+|++|++++|++..+|..
T Consensus 267 L~Ls~N~L~~LP~~l-~--~sL~~L~Ls~N~Lt~LP~~ 301 (754)
T PRK15370 267 LDLFHNKISCLPENL-P--EELRYLSVYDNSIRTLPAH 301 (754)
T ss_pred EECcCCccCcccccc-C--CCCcEEECCCCccccCccc
Confidence 888888888888877 4 4788888888888777654
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.28 E-value=1.1e-06 Score=84.77 Aligned_cols=87 Identities=17% Similarity=0.107 Sum_probs=62.2
Q ss_pred CeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCccEE
Q 048591 185 HMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTL 264 (286)
Q Consensus 185 ~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L 264 (286)
+|+.|.+.+|.+.. +|. ..+.|+.|++++|.++.+|... .+|++|++++|.|+.+|.++ +++.+|+.|
T Consensus 383 ~L~~LdLs~N~Lt~-----LP~---l~s~L~~LdLS~N~LssIP~l~---~~L~~L~Ls~NqLt~LP~sl-~~L~~L~~L 450 (788)
T PRK15387 383 GLKELIVSGNRLTS-----LPV---LPSELKELMVSGNRLTSLPMLP---SGLLSLSVYRNQLTRLPESL-IHLSSETTV 450 (788)
T ss_pred ccceEEecCCcccC-----CCC---cccCCCEEEccCCcCCCCCcch---hhhhhhhhccCcccccChHH-hhccCCCeE
Confidence 55666666655542 221 1246777888888887777533 46788999999999999998 999999999
Q ss_pred ecCCCCc-cccchHHhhhhc
Q 048591 265 DMPFSYI-DHTADEFTLHAR 283 (286)
Q Consensus 265 ~l~~~~l-~~lP~~i~~L~~ 283 (286)
++++|++ ...|..+.++..
T Consensus 451 dLs~N~Ls~~~~~~L~~l~s 470 (788)
T PRK15387 451 NLEGNPLSERTLQALREITS 470 (788)
T ss_pred ECCCCCCCchHHHHHHHHhc
Confidence 9999988 556666655543
No 29
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.25 E-value=4.6e-07 Score=82.67 Aligned_cols=108 Identities=17% Similarity=0.092 Sum_probs=77.5
Q ss_pred CCCEEEEEEecCCCccc--ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc-hhhcccccc
Q 048591 161 KKNVKRINVFYKQSDFV--HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLL 237 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L 237 (286)
...+.++.+..|..... +.+..++.||+|+++.|.+.. ...+.|..-.+++.|+|++|+|+.+- ..+..+.+|
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~----i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL 199 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISE----IPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSL 199 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhc----ccCCCCCCCCCceEEeeccccccccccccccccchh
Confidence 45577788877775422 233367788888888877765 34456666677888888888877554 456677788
Q ss_pred ceeeeccccccccchhHhhCCCCccEEecCCCCcc
Q 048591 238 RYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYID 272 (286)
Q Consensus 238 ~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~ 272 (286)
..|.|+.|+|+.||.-+|.+|++|+.|+|..|.++
T Consensus 200 ~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 200 LTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred eeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence 88888888888888877667888888888887653
No 30
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.20 E-value=1.5e-06 Score=83.84 Aligned_cols=67 Identities=19% Similarity=0.108 Sum_probs=54.6
Q ss_pred CceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591 212 EFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT 285 (286)
Q Consensus 212 ~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~ 285 (286)
.+|+.|++++|.++.+|... .+|++|++++|.++.+|... . +|+.|++++|++..+|..++++++++
T Consensus 382 ~~L~~LdLs~N~Lt~LP~l~---s~L~~LdLS~N~LssIP~l~-~---~L~~L~Ls~NqLt~LP~sl~~L~~L~ 448 (788)
T PRK15387 382 SGLKELIVSGNRLTSLPVLP---SELKELMVSGNRLTSLPMLP-S---GLLSLSVYRNQLTRLPESLIHLSSET 448 (788)
T ss_pred cccceEEecCCcccCCCCcc---cCCCEEEccCCcCCCCCcch-h---hhhhhhhccCcccccChHHhhccCCC
Confidence 46788888888888887543 57888999999998888755 3 57789999999999999999888765
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.17 E-value=4.8e-07 Score=82.26 Aligned_cols=110 Identities=15% Similarity=0.108 Sum_probs=69.9
Q ss_pred EEEEEEecCC-CcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeee
Q 048591 164 VKRINVFYKQ-SDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKL 242 (286)
Q Consensus 164 ~r~l~l~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L 242 (286)
++.+.+..+. ...+..++...+|..|++..|... .++..+..+..||.|.+..|.+..+|+..+.|+ |..||+
T Consensus 145 Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~-----slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDf 218 (722)
T KOG0532|consen 145 LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ-----SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDF 218 (722)
T ss_pred ceeEEEecCccccCCcccccchhHHHhhhhhhhhh-----hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeec
Confidence 3444444444 234444444555555555555554 455666667777777777777777777777554 677777
Q ss_pred ccccccccchhHhhCCCCccEEecCCCCccccchHHhh
Q 048591 243 NIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTL 280 (286)
Q Consensus 243 ~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~ 280 (286)
++|++..+|-.+ .+++.||+|-|.+|.++.-|..|.-
T Consensus 219 ScNkis~iPv~f-r~m~~Lq~l~LenNPLqSPPAqIC~ 255 (722)
T KOG0532|consen 219 SCNKISYLPVDF-RKMRHLQVLQLENNPLQSPPAQICE 255 (722)
T ss_pred ccCceeecchhh-hhhhhheeeeeccCCCCCChHHHHh
Confidence 777777777777 7777777777777777776666543
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.16 E-value=4e-07 Score=82.70 Aligned_cols=114 Identities=21% Similarity=0.175 Sum_probs=91.3
Q ss_pred EEEEEEecCCCc-ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeee
Q 048591 164 VKRINVFYKQSD-FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKL 242 (286)
Q Consensus 164 ~r~l~l~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L 242 (286)
+..+.+..+... .+..+ -.--|+.|.+.+|+.. ..|..++..+.|..||.+.|.+..+|+.++.|..|+.|++
T Consensus 123 lt~l~ls~NqlS~lp~~l-C~lpLkvli~sNNkl~-----~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~v 196 (722)
T KOG0532|consen 123 LTFLDLSSNQLSHLPDGL-CDLPLKVLIVSNNKLT-----SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNV 196 (722)
T ss_pred HHHhhhccchhhcCChhh-hcCcceeEEEecCccc-----cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHH
Confidence 334444444432 23333 2345888999998887 4667778889999999999999999999999999999999
Q ss_pred ccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591 243 NIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT 285 (286)
Q Consensus 243 ~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~ 285 (286)
+.|++..+|+.+ +.| .|..||++.|++..||-.+.+|+.|.
T Consensus 197 rRn~l~~lp~El-~~L-pLi~lDfScNkis~iPv~fr~m~~Lq 237 (722)
T KOG0532|consen 197 RRNHLEDLPEEL-CSL-PLIRLDFSCNKISYLPVDFRKMRHLQ 237 (722)
T ss_pred hhhhhhhCCHHH-hCC-ceeeeecccCceeecchhhhhhhhhe
Confidence 999999999999 855 58999999999999999999988764
No 33
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.16 E-value=8.6e-07 Score=85.71 Aligned_cols=85 Identities=14% Similarity=0.117 Sum_probs=48.6
Q ss_pred CCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCccE
Q 048591 184 SHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYT 263 (286)
Q Consensus 184 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~ 263 (286)
++|++|.+.+|.... +|..+. ++|+.|++++|.+..+|..+. ..|++|++++|.+..+|..+ . .+|+.
T Consensus 325 ~sL~~L~Ls~N~Lt~-----LP~~l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~LP~~l-~--~sL~~ 392 (754)
T PRK15370 325 PGLKTLEAGENALTS-----LPASLP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENL-P--AALQI 392 (754)
T ss_pred ccceeccccCCcccc-----CChhhc--CcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCCCCHhH-H--HHHHH
Confidence 345555555554432 222221 456666666666666665543 46666666666666666666 4 25666
Q ss_pred EecCCCCccccchHHhh
Q 048591 264 LDMPFSYIDHTADEFTL 280 (286)
Q Consensus 264 L~l~~~~l~~lP~~i~~ 280 (286)
|++++|++..+|..+.+
T Consensus 393 LdLs~N~L~~LP~sl~~ 409 (754)
T PRK15370 393 MQASRNNLVRLPESLPH 409 (754)
T ss_pred HhhccCCcccCchhHHH
Confidence 66666666666655444
No 34
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.04 E-value=1.4e-06 Score=65.40 Aligned_cols=90 Identities=16% Similarity=0.152 Sum_probs=61.7
Q ss_pred CCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCcc
Q 048591 183 DSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLY 262 (286)
Q Consensus 183 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~ 262 (286)
..+|.+..+.+|.+.. .++..-.+++.+..|+|++|.++.+|..+..++.||.|+++.|.+...|.-| ..|.+|-
T Consensus 52 ~~el~~i~ls~N~fk~----fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi-~~L~~l~ 126 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKK----FPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVI-APLIKLD 126 (177)
T ss_pred CceEEEEecccchhhh----CCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHH-HHHHhHH
Confidence 3445555566665543 2334444555677777777777777777777777788888777777777777 6677777
Q ss_pred EEecCCCCccccchH
Q 048591 263 TLDMPFSYIDHTADE 277 (286)
Q Consensus 263 ~L~l~~~~l~~lP~~ 277 (286)
.|+..+|.+.++|.+
T Consensus 127 ~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 127 MLDSPENARAEIDVD 141 (177)
T ss_pred HhcCCCCccccCcHH
Confidence 777777776666654
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.03 E-value=3.5e-06 Score=73.61 Aligned_cols=109 Identities=15% Similarity=0.117 Sum_probs=75.7
Q ss_pred CEEEEEEecCCCc------ccccCCCC-CCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCc-----cCchh
Q 048591 163 NVKRINVFYKQSD------FVHFVDDD-SHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-----QYPSG 230 (286)
Q Consensus 163 ~~r~l~l~~~~~~------~~~~~~~~-~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp~~ 230 (286)
.++++.+..+... ....+..+ ++|+.|.+.++.............+..++.|+.|++++|.+. .++..
T Consensus 109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 188 (319)
T cd00116 109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG 188 (319)
T ss_pred cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence 4788888776543 11222345 788899888888753211134456677788999999988876 34445
Q ss_pred hccccccceeeecccccc-----ccchhHhhCCCCccEEecCCCCcc
Q 048591 231 IENLFLLRYLKLNIPSLK-----ILPSSLLSNLLNLYTLDMPFSYID 272 (286)
Q Consensus 231 i~~L~~L~~L~L~~~~i~-----~LP~~i~~~L~~L~~L~l~~~~l~ 272 (286)
+..+.+|++|++++|.+. .++..+ ..+++|++|++++|.+.
T Consensus 189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~-~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 189 LKANCNLEVLDLNNNGLTDEGASALAETL-ASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHhCCCCCEEeccCCccChHHHHHHHHHh-cccCCCCEEecCCCcCc
Confidence 556678999999988764 455666 77888999999998774
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.02 E-value=3.1e-06 Score=76.51 Aligned_cols=91 Identities=23% Similarity=0.156 Sum_probs=41.5
Q ss_pred CeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCccEE
Q 048591 185 HMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTL 264 (286)
Q Consensus 185 ~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L 264 (286)
+|+.|.+.++... ..+..+..++.|+.|+++.|.+..+|...+.+..|+.|++++|.+..+|..+ +.+.+|++|
T Consensus 141 nL~~L~l~~N~i~-----~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~-~~~~~L~~l 214 (394)
T COG4886 141 NLKELDLSDNKIE-----SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEI-ELLSALEEL 214 (394)
T ss_pred hcccccccccchh-----hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhh-hhhhhhhhh
Confidence 4444444444443 1223344444455555555554444444444444444555554444444444 444444444
Q ss_pred ecCCCCccccchHHhhh
Q 048591 265 DMPFSYIDHTADEFTLH 281 (286)
Q Consensus 265 ~l~~~~l~~lP~~i~~L 281 (286)
.+.+|.+.+.|..+.++
T Consensus 215 ~~~~N~~~~~~~~~~~~ 231 (394)
T COG4886 215 DLSNNSIIELLSSLSNL 231 (394)
T ss_pred hhcCCcceecchhhhhc
Confidence 44444333333333333
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.01 E-value=3.7e-06 Score=76.05 Aligned_cols=94 Identities=30% Similarity=0.300 Sum_probs=81.1
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhcCCC-ceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCC
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLE-FLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLN 260 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~-~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~ 260 (286)
..+.+..|.+.++.... +++....+. +|+.|++++|.+..+|..++.+++|+.|++++|++..+|... +.+.+
T Consensus 114 ~~~~l~~L~l~~n~i~~-----i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~-~~~~~ 187 (394)
T COG4886 114 ELTNLTSLDLDNNNITD-----IPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLL-SNLSN 187 (394)
T ss_pred cccceeEEecCCccccc-----CccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhh-hhhhh
Confidence 55778899888888864 445566664 899999999999999989999999999999999999999998 89999
Q ss_pred ccEEecCCCCccccchHHhhh
Q 048591 261 LYTLDMPFSYIDHTADEFTLH 281 (286)
Q Consensus 261 L~~L~l~~~~l~~lP~~i~~L 281 (286)
|+.|++++|++..+|..++.+
T Consensus 188 L~~L~ls~N~i~~l~~~~~~~ 208 (394)
T COG4886 188 LNNLDLSGNKISDLPPEIELL 208 (394)
T ss_pred hhheeccCCccccCchhhhhh
Confidence 999999999999999865433
No 38
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.92 E-value=1.1e-05 Score=70.57 Aligned_cols=111 Identities=15% Similarity=0.020 Sum_probs=77.2
Q ss_pred CCCEEEEEEecCCCc--ccccCCCC---CCeeEEEEecCCCCCCCCchhhhhhcCC-CceEEEEeeCCCCc-----cCch
Q 048591 161 KKNVKRINVFYKQSD--FVHFVDDD---SHMHSLLYFTSKSDHLDPIDWGIICLML-EFLRVLDLGSLVLI-----QYPS 229 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~--~~~~~~~~---~~Lr~L~l~~~~~~~~~~~~~~~~~~~l-~~Lr~L~l~~~~l~-----~lp~ 229 (286)
..+++.+.+..+... .+..+..+ ++|+.|.+.++.............+..+ ++|+.|++++|.++ .++.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 457888888776643 22111122 5599999988876531101233455666 88999999999877 3455
Q ss_pred hhccccccceeeecccccc-----ccchhHhhCCCCccEEecCCCCcc
Q 048591 230 GIENLFLLRYLKLNIPSLK-----ILPSSLLSNLLNLYTLDMPFSYID 272 (286)
Q Consensus 230 ~i~~L~~L~~L~L~~~~i~-----~LP~~i~~~L~~L~~L~l~~~~l~ 272 (286)
.+..+.+|++|++++|.+. .++..+ ..+++|+.|++++|.+.
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGL-KANCNLEVLDLNNNGLT 206 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHH-HhCCCCCEEeccCCccC
Confidence 5667788999999999876 456666 77789999999999764
No 39
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.88 E-value=4e-06 Score=73.24 Aligned_cols=97 Identities=19% Similarity=0.062 Sum_probs=74.5
Q ss_pred CCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhccccccceeeecc-ccccccchhHhhCCCCc
Q 048591 184 SHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNI-PSLKILPSSLLSNLLNL 261 (286)
Q Consensus 184 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~L~~L~L~~-~~i~~LP~~i~~~L~~L 261 (286)
+....+.+..|.+.. +++..|+.++.||.|||+.|.|+.+ |..+..|..|..|-+.+ |+|+.+|+..|+.|..|
T Consensus 67 ~~tveirLdqN~I~~----iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 67 PETVEIRLDQNQISS----IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred CcceEEEeccCCccc----CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 455667788888776 6778899999999999999998854 57788888887777766 77999999888899999
Q ss_pred cEEecCCCCccccc-hHHhhhhcc
Q 048591 262 YTLDMPFSYIDHTA-DEFTLHARN 284 (286)
Q Consensus 262 ~~L~l~~~~l~~lP-~~i~~L~~~ 284 (286)
|.|.+.-|++.-++ ..+..|+.|
T Consensus 143 qrLllNan~i~Cir~~al~dL~~l 166 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLPSL 166 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhhhc
Confidence 98888888775444 345555544
No 40
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.86 E-value=6.1e-06 Score=62.05 Aligned_cols=79 Identities=14% Similarity=0.137 Sum_probs=69.1
Q ss_pred hhhhcCCCceEEEEeeCCCCccCchhhcccc-ccceeeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhc
Q 048591 205 GIICLMLEFLRVLDLGSLVLIQYPSGIENLF-LLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHAR 283 (286)
Q Consensus 205 ~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~-~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~ 283 (286)
...+.....|...+|++|.++.+|+.+.... -++.|++.+|.|..+|..+ ..++.|+.|+++.|.+...|.-|..|.+
T Consensus 46 vy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~-Aam~aLr~lNl~~N~l~~~p~vi~~L~~ 124 (177)
T KOG4579|consen 46 VYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEEL-AAMPALRSLNLRFNPLNAEPRVIAPLIK 124 (177)
T ss_pred HHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHH-hhhHHhhhcccccCccccchHHHHHHHh
Confidence 3456677788999999999999998887654 7999999999999999998 9999999999999999888888777655
Q ss_pred c
Q 048591 284 N 284 (286)
Q Consensus 284 ~ 284 (286)
+
T Consensus 125 l 125 (177)
T KOG4579|consen 125 L 125 (177)
T ss_pred H
Confidence 4
No 41
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.62 E-value=7e-05 Score=72.06 Aligned_cols=85 Identities=25% Similarity=0.264 Sum_probs=63.7
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccc--hhHhhCCC
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILP--SSLLSNLL 259 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP--~~i~~~L~ 259 (286)
.+|.|++|.+.+-..... .+...+.++++|+.||+++++++.+ ..|++|++|+.|.+++-.++.-+ ..+ .+|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~---dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~L-F~L~ 220 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDND---DFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDL-FNLK 220 (699)
T ss_pred hCcccceEEecCceecch---hHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHH-hccc
Confidence 688999998888766432 3556778889999999999988877 67888888888888776665433 245 6788
Q ss_pred CccEEecCCCCc
Q 048591 260 NLYTLDMPFSYI 271 (286)
Q Consensus 260 ~L~~L~l~~~~l 271 (286)
+|+.||++....
T Consensus 221 ~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 221 KLRVLDISRDKN 232 (699)
T ss_pred CCCeeecccccc
Confidence 888888877643
No 42
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.35 E-value=2.7e-05 Score=68.21 Aligned_cols=113 Identities=16% Similarity=0.032 Sum_probs=86.7
Q ss_pred CCCCEEEEEEecCCCc-cc-ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeC-CCCccCc-hhhcccc
Q 048591 160 SKKNVKRINVFYKQSD-FV-HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGS-LVLIQYP-SGIENLF 235 (286)
Q Consensus 160 ~~~~~r~l~l~~~~~~-~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~-~~l~~lp-~~i~~L~ 235 (286)
.+.....+.+..|... +| ..++.+++||.|++++|.+.. +-|..|..++.|..|-+.+ |.|+.+| ..++.|.
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~----I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~ 140 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISF----IAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS 140 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccccchhh----cChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence 4666777888887755 33 345688999999999998876 6678888888887776666 7799988 4577888
Q ss_pred ccceeeeccccccccchhHhhCCCCccEEecCCCCccccch
Q 048591 236 LLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTAD 276 (286)
Q Consensus 236 ~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~ 276 (286)
.|+-|.+.-|.+..++...|..|++|..|.+-+|.++.++.
T Consensus 141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~ 181 (498)
T KOG4237|consen 141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICK 181 (498)
T ss_pred HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhcc
Confidence 88888888888877777666788888888888877766665
No 43
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.34 E-value=0.00038 Score=62.43 Aligned_cols=104 Identities=13% Similarity=0.071 Sum_probs=58.6
Q ss_pred CEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCC-CCccCchhhccccccceee
Q 048591 163 NVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSL-VLIQYPSGIENLFLLRYLK 241 (286)
Q Consensus 163 ~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~-~l~~lp~~i~~L~~L~~L~ 241 (286)
..++|.+..+.....+. -.++|++|.+.++.... .+|..+ .++|+.|++++| .+..+|.+ |+.|+
T Consensus 53 ~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLt----sLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~ 118 (426)
T PRK15386 53 ASGRLYIKDCDIESLPV--LPNELTEITIENCNNLT----TLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLE 118 (426)
T ss_pred CCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcc----cCCchh--hhhhhheEccCcccccccccc------cceEE
Confidence 34566666654322111 23467888777654422 233333 246778888877 47677754 44444
Q ss_pred ecccc---ccccchhHhhCCC------------------CccEEecCCCCcc----ccchHHhhh
Q 048591 242 LNIPS---LKILPSSLLSNLL------------------NLYTLDMPFSYID----HTADEFTLH 281 (286)
Q Consensus 242 L~~~~---i~~LP~~i~~~L~------------------~L~~L~l~~~~l~----~lP~~i~~L 281 (286)
++++. +..||+++ ..|. +|++|++.+|... .+|.++..|
T Consensus 119 L~~n~~~~L~~LPssL-k~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L 182 (426)
T PRK15386 119 IKGSATDSIKNVPNGL-TSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSI 182 (426)
T ss_pred eCCCCCcccccCcchH-hheeccccccccccccccccCCcccEEEecCCCcccCcccccccCcEE
Confidence 55443 56777777 6663 6788888887542 355544433
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.26 E-value=0.00013 Score=66.57 Aligned_cols=104 Identities=20% Similarity=0.257 Sum_probs=62.0
Q ss_pred CCCEEEEEEecCCCccccc-CCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccce
Q 048591 161 KKNVKRINVFYKQSDFVHF-VDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRY 239 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~ 239 (286)
...+..+.+..+...-... +..+++|+.|.+..+.+... ..+..+..|+.|++++|.++.++ .+..+..|+.
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i------~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL------EGLSTLTLLKELNLSGNLISDIS-GLESLKSLKL 166 (414)
T ss_pred ccceeeeeccccchhhcccchhhhhcchheeccccccccc------cchhhccchhhheeccCcchhcc-CCccchhhhc
Confidence 4455666666666544444 44566777777766666432 23445555667777777666554 3444666777
Q ss_pred eeeccccccccchh-HhhCCCCccEEecCCCCcc
Q 048591 240 LKLNIPSLKILPSS-LLSNLLNLYTLDMPFSYID 272 (286)
Q Consensus 240 L~L~~~~i~~LP~~-i~~~L~~L~~L~l~~~~l~ 272 (286)
+++++|++..++.. . ..+.+|+.+++.+|.+.
T Consensus 167 l~l~~n~i~~ie~~~~-~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDEL-SELISLEELDLGGNSIR 199 (414)
T ss_pred ccCCcchhhhhhhhhh-hhccchHHHhccCCchh
Confidence 77777766666553 4 56666676777666553
No 45
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.19 E-value=0.00018 Score=69.32 Aligned_cols=98 Identities=19% Similarity=0.058 Sum_probs=70.8
Q ss_pred CCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCc--cCchhhccccccceeeeccccccccchhHhhCCCCc
Q 048591 184 SHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI--QYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNL 261 (286)
Q Consensus 184 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~--~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L 261 (286)
.+|+.|++.|...-... .+...-.-+|.|+.|.+.+-.+. ++-.-..++++|+.||+|+++++.+ ..| ++|+||
T Consensus 122 ~nL~~LdI~G~~~~s~~--W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GI-S~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNG--WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGI-SRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhcc--HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHH-hccccH
Confidence 46677777664432111 44455567899999999997754 3344455788999999999999999 889 999999
Q ss_pred cEEecCCCCccccc--hHHhhhhccC
Q 048591 262 YTLDMPFSYIDHTA--DEFTLHARNT 285 (286)
Q Consensus 262 ~~L~l~~~~l~~lP--~~i~~L~~~~ 285 (286)
|+|.+++=.+..-+ .++.+|++|.
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCC
Confidence 99999886664322 3566777664
No 46
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.00011 Score=65.29 Aligned_cols=89 Identities=18% Similarity=0.108 Sum_probs=59.1
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc--hhhccccccceeeeccccccc--cchh----
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP--SGIENLFLLRYLKLNIPSLKI--LPSS---- 253 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp--~~i~~L~~L~~L~L~~~~i~~--LP~~---- 253 (286)
.+|+|..|.+..|.... ........++.|+.|||++|.+..++ ..++.++.|+.|+++.|+|.+ +|+.
T Consensus 220 ~fPsl~~L~L~~N~~~~----~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~ 295 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIIL----IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLD 295 (505)
T ss_pred hCCcHHHhhhhcccccc----eecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchh
Confidence 45566666665553211 11223344566778888888877666 667888888888888888763 3443
Q ss_pred -HhhCCCCccEEecCCCCccccc
Q 048591 254 -LLSNLLNLYTLDMPFSYIDHTA 275 (286)
Q Consensus 254 -i~~~L~~L~~L~l~~~~l~~lP 275 (286)
. ..+++|++|++..|++.+.|
T Consensus 296 kt-~~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 296 KT-HTFPKLEYLNISENNIRDWR 317 (505)
T ss_pred hh-cccccceeeecccCcccccc
Confidence 2 36788899999988886555
No 47
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.10 E-value=0.00021 Score=36.16 Aligned_cols=18 Identities=44% Similarity=0.670 Sum_probs=8.7
Q ss_pred cceeeeccccccccchhH
Q 048591 237 LRYLKLNIPSLKILPSSL 254 (286)
Q Consensus 237 L~~L~L~~~~i~~LP~~i 254 (286)
|++|++++|+++.+|+++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444555555444444443
No 48
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.08 E-value=0.00017 Score=36.49 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=19.1
Q ss_pred CccEEecCCCCccccchHHhhh
Q 048591 260 NLYTLDMPFSYIDHTADEFTLH 281 (286)
Q Consensus 260 ~L~~L~l~~~~l~~lP~~i~~L 281 (286)
+|++||+++|++.++|+++++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 6899999999999999987764
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.07 E-value=0.00062 Score=54.67 Aligned_cols=102 Identities=18% Similarity=0.102 Sum_probs=73.6
Q ss_pred CEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc--hhhcccccccee
Q 048591 163 NVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP--SGIENLFLLRYL 240 (286)
Q Consensus 163 ~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp--~~i~~L~~L~~L 240 (286)
...-+.+..+.......+..++.|.+|.+.+|.+.. +-|..-..+++|..|.|.+|++.++- ..+..++.|+||
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~----I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITR----IDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCccee----eccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 334455555554444455588999999999999876 33444456677999999999987543 335567889999
Q ss_pred eeccccccccch----hHhhCCCCccEEecCCC
Q 048591 241 KLNIPSLKILPS----SLLSNLLNLYTLDMPFS 269 (286)
Q Consensus 241 ~L~~~~i~~LP~----~i~~~L~~L~~L~l~~~ 269 (286)
.+-+|.++..+. -+ .++++|++||...-
T Consensus 119 tll~Npv~~k~~YR~yvl-~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVL-YKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCchhcccCceeEEE-EecCcceEeehhhh
Confidence 999998775544 25 78999999998764
No 50
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.02 E-value=0.00078 Score=58.31 Aligned_cols=89 Identities=17% Similarity=0.168 Sum_probs=36.5
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCcc-----Cchhh-ccccccceeeecccccc-----cc
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQ-----YPSGI-ENLFLLRYLKLNIPSLK-----IL 250 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-----lp~~i-~~L~~L~~L~L~~~~i~-----~L 250 (286)
.+++|+.|++..|-+.......+...++.+++||.|.++.|.++. +-..+ ...+.|+.|.+.+|.|+ .+
T Consensus 211 ~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~l 290 (382)
T KOG1909|consen 211 HCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALAL 290 (382)
T ss_pred hCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHH
Confidence 444444444444444322222233344444444444444444331 11111 11334445555544433 22
Q ss_pred chhHhhCCCCccEEecCCCCc
Q 048591 251 PSSLLSNLLNLYTLDMPFSYI 271 (286)
Q Consensus 251 P~~i~~~L~~L~~L~l~~~~l 271 (286)
-..+ ...+.|..|+|++|.+
T Consensus 291 a~~~-~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 291 AACM-AEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHH-hcchhhHHhcCCcccc
Confidence 3333 4445555555555544
No 51
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.00022 Score=63.40 Aligned_cols=86 Identities=22% Similarity=0.141 Sum_probs=54.9
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCC-C--ccCchhhccccccceeeeccccccccc--hhHhh
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLV-L--IQYPSGIENLFLLRYLKLNIPSLKILP--SSLLS 256 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l--~~lp~~i~~L~~L~~L~L~~~~i~~LP--~~i~~ 256 (286)
.+++|+.|.+.+|..... ........+|+|.+|+|++|. + +..+. .-+..|+.|||++|++..+| .-+ +
T Consensus 195 ~l~~lK~L~l~~CGls~k---~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~~~~~~~~-~ 268 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWK---DVQWILLTFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLIDFDQGYKV-G 268 (505)
T ss_pred hhhhhheEEeccCCCCHH---HHHHHHHhCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCccccccccccc-c
Confidence 345555555555555321 344555667777777777773 2 23332 23567888888888877666 456 7
Q ss_pred CCCCccEEecCCCCccc
Q 048591 257 NLLNLYTLDMPFSYIDH 273 (286)
Q Consensus 257 ~L~~L~~L~l~~~~l~~ 273 (286)
.|+.|..|+++.|.+.+
T Consensus 269 ~l~~L~~Lnls~tgi~s 285 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIAS 285 (505)
T ss_pred cccchhhhhccccCcch
Confidence 88888888888887643
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.90 E-value=0.00011 Score=69.10 Aligned_cols=103 Identities=21% Similarity=0.171 Sum_probs=74.5
Q ss_pred CCCEEEEEEecCCCccc-ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccce
Q 048591 161 KKNVKRINVFYKQSDFV-HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRY 239 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~ 239 (286)
+.++..+++..|..... .++.-++.+++|++..|+... -..+..++.|+.|||+.|.+..+|.--..-.+|..
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~------v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~ 236 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTK------VDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQL 236 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhh------hHHHHhcccccccccccchhccccccchhhhhhee
Confidence 34455555555553322 233346788999999998853 24788899999999999999988842212234999
Q ss_pred eeeccccccccchhHhhCCCCccEEecCCCCc
Q 048591 240 LKLNIPSLKILPSSLLSNLLNLYTLDMPFSYI 271 (286)
Q Consensus 240 L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l 271 (286)
|.+++|.+++|- .| .+|++|+.||++.|-+
T Consensus 237 L~lrnN~l~tL~-gi-e~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 237 LNLRNNALTTLR-GI-ENLKSLYGLDLSYNLL 266 (1096)
T ss_pred eeecccHHHhhh-hH-HhhhhhhccchhHhhh
Confidence 999999998884 47 8999999999999855
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.86 E-value=0.00036 Score=63.61 Aligned_cols=89 Identities=22% Similarity=0.301 Sum_probs=70.4
Q ss_pred CCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCC
Q 048591 180 VDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLL 259 (286)
Q Consensus 180 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~ 259 (286)
+..+.++..+.+.++.+... ...+..+++|++|++++|.|+.+. .+..+..|+.|++++|.|..++. + ..+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i-----~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~-~-~~l~ 162 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKI-----ENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISG-L-ESLK 162 (414)
T ss_pred cccccceeeeeccccchhhc-----ccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhccC-C-ccch
Confidence 44678888888888888642 233778899999999999988775 57778889999999999888765 3 5688
Q ss_pred CccEEecCCCCccccch
Q 048591 260 NLYTLDMPFSYIDHTAD 276 (286)
Q Consensus 260 ~L~~L~l~~~~l~~lP~ 276 (286)
+|+.+++.+|.+..++.
T Consensus 163 ~L~~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 163 SLKLLDLSYNRIVDIEN 179 (414)
T ss_pred hhhcccCCcchhhhhhh
Confidence 99999999998876655
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.82 E-value=0.00088 Score=60.13 Aligned_cols=84 Identities=17% Similarity=0.152 Sum_probs=61.7
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCC-CccCchhhccccccceeeeccc-cccccchhHhhCCC
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLV-LIQYPSGIENLFLLRYLKLNIP-SLKILPSSLLSNLL 259 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l~~lp~~i~~L~~L~~L~L~~~-~i~~LP~~i~~~L~ 259 (286)
.+.+++.|.+.++.... +|. -..+|+.|.+++|. ++.+|..+. .+|++|++++| .+..+|.++ ..
T Consensus 50 ~~~~l~~L~Is~c~L~s-----LP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~sL-e~-- 116 (426)
T PRK15386 50 EARASGRLYIKDCDIES-----LPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPESV-RS-- 116 (426)
T ss_pred HhcCCCEEEeCCCCCcc-----cCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccccc-ce--
Confidence 57889999999886653 331 22359999999866 788887663 58999999998 688888776 43
Q ss_pred CccEEecCCC---CccccchHHhhhh
Q 048591 260 NLYTLDMPFS---YIDHTADEFTLHA 282 (286)
Q Consensus 260 ~L~~L~l~~~---~l~~lP~~i~~L~ 282 (286)
|++..+ .+..+|+++..|.
T Consensus 117 ----L~L~~n~~~~L~~LPssLk~L~ 138 (426)
T PRK15386 117 ----LEIKGSATDSIKNVPNGLTSLS 138 (426)
T ss_pred ----EEeCCCCCcccccCcchHhhee
Confidence 445544 3688999888774
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.65 E-value=0.00019 Score=67.73 Aligned_cols=91 Identities=13% Similarity=0.089 Sum_probs=67.1
Q ss_pred eeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCccEEe
Q 048591 186 MHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLD 265 (286)
Q Consensus 186 Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~ 265 (286)
|.+..+..|... .+...+.-++.|+.|+|+.|++..+- .+..+.+|+.|||++|.+..+|.--+..+ .|+.|+
T Consensus 166 L~~a~fsyN~L~-----~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 166 LATASFSYNRLV-----LMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred HhhhhcchhhHH-----hHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeee
Confidence 444444444443 45567778888999999999988776 78889999999999999988887331333 499999
Q ss_pred cCCCCccccchHHhhhhcc
Q 048591 266 MPFSYIDHTADEFTLHARN 284 (286)
Q Consensus 266 l~~~~l~~lP~~i~~L~~~ 284 (286)
+++|.++++- +|.+|..|
T Consensus 239 lrnN~l~tL~-gie~LksL 256 (1096)
T KOG1859|consen 239 LRNNALTTLR-GIENLKSL 256 (1096)
T ss_pred ecccHHHhhh-hHHhhhhh
Confidence 9999887763 56666554
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.00085 Score=57.07 Aligned_cols=87 Identities=24% Similarity=0.161 Sum_probs=62.6
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhh-ccccccceeeeccccc--cccchhHhhCC
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGI-ENLFLLRYLKLNIPSL--KILPSSLLSNL 258 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i-~~L~~L~~L~L~~~~i--~~LP~~i~~~L 258 (286)
....++.+++.+|.+...+ .+...+.++|.|++|+++.|++...-... -.+++|+.|-|.|+.+ +.....+ ..+
T Consensus 69 ~~~~v~elDL~~N~iSdWs--eI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l-~~l 145 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWS--EIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSL-DDL 145 (418)
T ss_pred HhhhhhhhhcccchhccHH--HHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhh-hcc
Confidence 5677888888888876544 56677889999999999998865322222 3567889998888865 3555566 777
Q ss_pred CCccEEecCCCCc
Q 048591 259 LNLYTLDMPFSYI 271 (286)
Q Consensus 259 ~~L~~L~l~~~~l 271 (286)
+.++.|.++.|++
T Consensus 146 P~vtelHmS~N~~ 158 (418)
T KOG2982|consen 146 PKVTELHMSDNSL 158 (418)
T ss_pred hhhhhhhhccchh
Confidence 7777777777743
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.55 E-value=0.0017 Score=54.10 Aligned_cols=111 Identities=14% Similarity=0.036 Sum_probs=63.8
Q ss_pred CEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc--hhhcccccccee
Q 048591 163 NVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP--SGIENLFLLRYL 240 (286)
Q Consensus 163 ~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp--~~i~~L~~L~~L 240 (286)
.+..+++.+........+..+++|+.|.++.+...... .+......+++|++|++++|.++.+. .....+.+|..|
T Consensus 44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~--~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSG--GLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred chhhhhhhccceeecccCCCcchhhhhcccCCcccccc--cceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 34444444333222223337788888888877432211 33344456688888888888866311 234466777788
Q ss_pred eecccccccc---chhHhhCCCCccEEecCCCCccccc
Q 048591 241 KLNIPSLKIL---PSSLLSNLLNLYTLDMPFSYIDHTA 275 (286)
Q Consensus 241 ~L~~~~i~~L---P~~i~~~L~~L~~L~l~~~~l~~lP 275 (286)
++.+|....+ -..+|.-+++|.+||-....-.+.|
T Consensus 122 dl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~ 159 (260)
T KOG2739|consen 122 DLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAP 159 (260)
T ss_pred hcccCCccccccHHHHHHHHhhhhccccccccCCcccc
Confidence 8887764433 2345456778887776555434444
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=0.0024 Score=54.42 Aligned_cols=92 Identities=23% Similarity=0.189 Sum_probs=62.5
Q ss_pred EEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc---hhhccccccceeeecccc----ccccchhHhhCCCC
Q 048591 188 SLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP---SGIENLFLLRYLKLNIPS----LKILPSSLLSNLLN 260 (286)
Q Consensus 188 ~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp---~~i~~L~~L~~L~L~~~~----i~~LP~~i~~~L~~ 260 (286)
.+.+.++.+.... ....+=.....++.|||.+|.++... .-..+|++|++|+++.|. |..+|. .+.+
T Consensus 49 llvln~~~id~~g--d~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~----p~~n 122 (418)
T KOG2982|consen 49 LLVLNGSIIDNEG--DVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPL----PLKN 122 (418)
T ss_pred hheecCCCCCcch--hHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcc----cccc
Confidence 4445555444322 33344456778999999999988543 344579999999999986 456663 3468
Q ss_pred ccEEecCCCCc--cccchHHhhhhccC
Q 048591 261 LYTLDMPFSYI--DHTADEFTLHARNT 285 (286)
Q Consensus 261 L~~L~l~~~~l--~~lP~~i~~L~~~~ 285 (286)
|++|-|.++.+ ...-..+..+|+.|
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 99999999876 44555566666554
No 59
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.23 E-value=0.0027 Score=29.81 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=5.9
Q ss_pred CccEEecCCCCccccc
Q 048591 260 NLYTLDMPFSYIDHTA 275 (286)
Q Consensus 260 ~L~~L~l~~~~l~~lP 275 (286)
+|+.|++++|++.++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4455555555544444
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.20 E-value=0.0021 Score=53.60 Aligned_cols=84 Identities=20% Similarity=0.098 Sum_probs=59.1
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCC--CCc-cCchhhccccccceeeecccccc---ccchhHh
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSL--VLI-QYPSGIENLFLLRYLKLNIPSLK---ILPSSLL 255 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~--~l~-~lp~~i~~L~~L~~L~L~~~~i~---~LP~~i~ 255 (286)
...+|..+.+.+...+. -..+..+++|+.|+++.| ++. .++...-.+++|++|++++|+|+ ++++ .
T Consensus 41 ~~~~le~ls~~n~gltt------~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l- 112 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTT------LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-L- 112 (260)
T ss_pred cccchhhhhhhccceee------cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-h-
Confidence 34445555555555432 245678889999999999 433 56655666699999999999876 3333 4
Q ss_pred hCCCCccEEecCCCCccc
Q 048591 256 SNLLNLYTLDMPFSYIDH 273 (286)
Q Consensus 256 ~~L~~L~~L~l~~~~l~~ 273 (286)
.++.+|..|++.+|....
T Consensus 113 ~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhhcchhhhhcccCCccc
Confidence 678889999999996533
No 61
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.10 E-value=0.0031 Score=29.60 Aligned_cols=16 Identities=44% Similarity=0.484 Sum_probs=7.5
Q ss_pred ccceeeeccccccccc
Q 048591 236 LLRYLKLNIPSLKILP 251 (286)
Q Consensus 236 ~L~~L~L~~~~i~~LP 251 (286)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5666666666666655
No 62
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.90 E-value=0.01 Score=51.63 Aligned_cols=112 Identities=14% Similarity=0.067 Sum_probs=82.6
Q ss_pred CCCCEEEEEEecCCCc------ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCc-----cCc
Q 048591 160 SKKNVKRINVFYKQSD------FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-----QYP 228 (286)
Q Consensus 160 ~~~~~r~l~l~~~~~~------~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp 228 (286)
.+.++|.+....|... ....+...+.|+.+.+..+.+...........+..+++|++|||..|.++ .+-
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 5677888888877633 12233356789999998888765433356678899999999999999976 344
Q ss_pred hhhccccccceeeecccccc-----ccchhHhhCCCCccEEecCCCCc
Q 048591 229 SGIENLFLLRYLKLNIPSLK-----ILPSSLLSNLLNLYTLDMPFSYI 271 (286)
Q Consensus 229 ~~i~~L~~L~~L~L~~~~i~-----~LP~~i~~~L~~L~~L~l~~~~l 271 (286)
..++.+++|+.|+++.|.++ .+-..+-...++|++|++.+|.+
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence 55677889999999999775 34444423468999999999987
No 63
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.48 E-value=0.013 Score=30.65 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=11.0
Q ss_pred CCccEEecCCCCccccchHH
Q 048591 259 LNLYTLDMPFSYIDHTADEF 278 (286)
Q Consensus 259 ~~L~~L~l~~~~l~~lP~~i 278 (286)
++|++|+|.+|++..+|.++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45555555555555555543
No 64
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.48 E-value=0.013 Score=30.65 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=11.0
Q ss_pred CCccEEecCCCCccccchHH
Q 048591 259 LNLYTLDMPFSYIDHTADEF 278 (286)
Q Consensus 259 ~~L~~L~l~~~~l~~lP~~i 278 (286)
++|++|+|.+|++..+|.++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45555555555555555543
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.25 E-value=0.0028 Score=53.49 Aligned_cols=81 Identities=23% Similarity=0.206 Sum_probs=63.7
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccch--hHhhCCC
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPS--SLLSNLL 259 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~--~i~~~L~ 259 (286)
++.+++.|.+.|+.... ..+..+|+.|+||.|+-|.|+++- .+...++|+.|.|+.|.|..+-+ -+ .+|+
T Consensus 17 dl~~vkKLNcwg~~L~D------Isic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YL-knlp 88 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDD------ISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYL-KNLP 88 (388)
T ss_pred HHHHhhhhcccCCCccH------HHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHH-hcCc
Confidence 45677778888887753 356788999999999999988774 57788899999999998876644 34 7888
Q ss_pred CccEEecCCCC
Q 048591 260 NLYTLDMPFSY 270 (286)
Q Consensus 260 ~L~~L~l~~~~ 270 (286)
+|++|-|..|.
T Consensus 89 sLr~LWL~ENP 99 (388)
T KOG2123|consen 89 SLRTLWLDENP 99 (388)
T ss_pred hhhhHhhccCC
Confidence 89999888773
No 66
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.24 E-value=0.028 Score=45.37 Aligned_cols=84 Identities=15% Similarity=0.066 Sum_probs=61.6
Q ss_pred CCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccc-cccceeeeccccccccch--hHhhCCCC
Q 048591 184 SHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENL-FLLRYLKLNIPSLKILPS--SLLSNLLN 260 (286)
Q Consensus 184 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L-~~L~~L~L~~~~i~~LP~--~i~~~L~~ 260 (286)
.+...+++.++... -...|..++.|..|.+.+|.|..+-+.++.+ ++|..|.|.+|+|.++-+ .+ ..++.
T Consensus 42 d~~d~iDLtdNdl~------~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL-a~~p~ 114 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR------KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPL-ASCPK 114 (233)
T ss_pred cccceecccccchh------hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchh-ccCCc
Confidence 35566777777663 2356788899999999999998887777764 569999999998776533 23 56788
Q ss_pred ccEEecCCCCcccc
Q 048591 261 LYTLDMPFSYIDHT 274 (286)
Q Consensus 261 L~~L~l~~~~l~~l 274 (286)
|++|.+-+|.+...
T Consensus 115 L~~Ltll~Npv~~k 128 (233)
T KOG1644|consen 115 LEYLTLLGNPVEHK 128 (233)
T ss_pred cceeeecCCchhcc
Confidence 88888888865443
No 67
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.94 E-value=0.018 Score=30.11 Aligned_cols=21 Identities=38% Similarity=0.360 Sum_probs=17.5
Q ss_pred ccccceeeeccccccccchhH
Q 048591 234 LFLLRYLKLNIPSLKILPSSL 254 (286)
Q Consensus 234 L~~L~~L~L~~~~i~~LP~~i 254 (286)
|++|++|+|++|.|+.+|..+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467888899988888888876
No 68
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.94 E-value=0.018 Score=30.11 Aligned_cols=21 Identities=38% Similarity=0.360 Sum_probs=17.5
Q ss_pred ccccceeeeccccccccchhH
Q 048591 234 LFLLRYLKLNIPSLKILPSSL 254 (286)
Q Consensus 234 L~~L~~L~L~~~~i~~LP~~i 254 (286)
|++|++|+|++|.|+.+|..+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467888899988888888876
No 69
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.93 E-value=0.0012 Score=54.29 Aligned_cols=84 Identities=12% Similarity=-0.049 Sum_probs=70.9
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCc
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNL 261 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L 261 (286)
.......|++..+... .....|+.+..|..||++.+.+..+|...+.+..++.+++..|..+.+|.+. ++++++
T Consensus 40 ~~kr~tvld~~s~r~v-----n~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~-~k~~~~ 113 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-----NLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQ-KKEPHP 113 (326)
T ss_pred ccceeeeehhhhhHHH-----hhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccc-cccCCc
Confidence 5667777777776654 3445677777888899999999999999999999999999999999999999 999999
Q ss_pred cEEecCCCCc
Q 048591 262 YTLDMPFSYI 271 (286)
Q Consensus 262 ~~L~l~~~~l 271 (286)
+++++.+|.+
T Consensus 114 k~~e~k~~~~ 123 (326)
T KOG0473|consen 114 KKNEQKKTEF 123 (326)
T ss_pred chhhhccCcc
Confidence 9999998865
No 70
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.78 E-value=0.00097 Score=54.81 Aligned_cols=43 Identities=5% Similarity=-0.311 Sum_probs=22.3
Q ss_pred hhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeecccc
Q 048591 204 WGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPS 246 (286)
Q Consensus 204 ~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~ 246 (286)
.|..+...+.++.+++..|..+..|.+.+.++|++|+++.+|.
T Consensus 80 ~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 80 LPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred ChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCc
Confidence 3444445555555555555555555555555555555555544
No 71
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=92.11 E-value=0.022 Score=48.76 Aligned_cols=41 Identities=15% Similarity=0.045 Sum_probs=23.2
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCC
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVL 224 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l 224 (286)
+-.+|+.|++.+++.-... ...-.+.++..|..|+++.|.+
T Consensus 232 kN~~L~~lnlsm~sG~t~n--~~~ll~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 232 KNSNLVRLNLSMCSGFTEN--ALQLLLSSCSRLDELNLSWCFL 272 (419)
T ss_pred ccccceeeccccccccchh--HHHHHHHhhhhHhhcCchHhhc
Confidence 5556666666665543322 3444556666666666666653
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.76 E-value=0.83 Score=33.76 Aligned_cols=106 Identities=14% Similarity=0.110 Sum_probs=55.2
Q ss_pred CEEEEEEecCCCcccc-cCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCch-hhcccccccee
Q 048591 163 NVKRINVFYKQSDFVH-FVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPS-GIENLFLLRYL 240 (286)
Q Consensus 163 ~~r~l~l~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~L~~L 240 (286)
.++.+.+......+.+ .+..+++|+.+.+.+. ... .....|..++.|+.+.+.+ .+..++. .+....+|+.+
T Consensus 13 ~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~----i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 13 NLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTS----IGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp T--EEEETST--EE-TTTTTT-TT-SEEEESST-TSC----E-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCEEEECCCeeEeChhhccccccccccccccc-ccc----cceeeeecccccccccccc-ccccccccccccccccccc
Confidence 4556666543332222 3336678888888664 332 3446788888899999966 5554553 45558889999
Q ss_pred eeccccccccchhHhhCCCCccEEecCCCCccccchH
Q 048591 241 KLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADE 277 (286)
Q Consensus 241 ~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~ 277 (286)
.+..+ +..++...|.+. +|+.+.+.. .+..++..
T Consensus 87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~ 120 (129)
T PF13306_consen 87 DIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEEN 120 (129)
T ss_dssp EETTT--BEEHTTTTTT--T--EEE-TT-B-SS----
T ss_pred ccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCc
Confidence 88765 778877776776 899888876 44555543
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.46 E-value=0.35 Score=35.84 Aligned_cols=87 Identities=17% Similarity=0.162 Sum_probs=53.0
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc-hhhccccccceeeeccccccccchhHhhCCCC
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKILPSSLLSNLLN 260 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~ 260 (286)
++++|+.+.+.. .... .....|..+..|+.+.+.++ +..++ ..+.....|+++.+.. .+..++...|..+.+
T Consensus 10 ~~~~l~~i~~~~-~~~~----I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKK----IGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp T-TT--EEEETS-T--E----E-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred CCCCCCEEEECC-CeeE----eChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 677888888764 2322 44567888889999999875 77666 3466676899999976 677788877577999
Q ss_pred ccEEecCCCCccccch
Q 048591 261 LYTLDMPFSYIDHTAD 276 (286)
Q Consensus 261 L~~L~l~~~~l~~lP~ 276 (286)
|+.+++..+ +..++.
T Consensus 83 l~~i~~~~~-~~~i~~ 97 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGS 97 (129)
T ss_dssp ECEEEETTT--BEEHT
T ss_pred ccccccCcc-ccEEch
Confidence 999999764 444443
No 74
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.70 E-value=0.023 Score=48.18 Aligned_cols=73 Identities=19% Similarity=0.124 Sum_probs=56.5
Q ss_pred CCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCccEEecCCCCccccch--HHhhhhccC
Q 048591 210 MLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTAD--EFTLHARNT 285 (286)
Q Consensus 210 ~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~--~i~~L~~~~ 285 (286)
.+.+.+.|+..||.+..+. -..+++.|+.|.|+-|+|+.|-+ + ..+++|+.|.|+.|.|..+-+ -+.+|++|+
T Consensus 17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~p-l-~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAP-L-QRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchh-H-HHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 3556778889999988653 34478999999999999999955 5 789999999999998866643 345555554
No 75
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=90.35 E-value=0.072 Score=45.71 Aligned_cols=62 Identities=23% Similarity=0.094 Sum_probs=45.2
Q ss_pred hhhcCCCceEEEEeeCCC-Cc-cCchhhccccccceeeeccccccccch---hHhhCCCCccEEecCCC
Q 048591 206 IICLMLEFLRVLDLGSLV-LI-QYPSGIENLFLLRYLKLNIPSLKILPS---SLLSNLLNLYTLDMPFS 269 (286)
Q Consensus 206 ~~~~~l~~Lr~L~l~~~~-l~-~lp~~i~~L~~L~~L~L~~~~i~~LP~---~i~~~L~~L~~L~l~~~ 269 (286)
.....+++|..|||+.|. ++ .+-..+.+++.|+||+++.|..- .|. .+ +..+.|.+||+.+|
T Consensus 307 tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i-~p~~~~~l-~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 307 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI-IPETLLEL-NSKPSLVYLDVFGC 373 (419)
T ss_pred HHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC-ChHHeeee-ccCcceEEEEeccc
Confidence 344678899999999887 55 33356778889999999988621 222 23 67788999999887
No 76
>PRK04841 transcriptional regulator MalT; Provisional
Probab=90.12 E-value=0.9 Score=45.71 Aligned_cols=119 Identities=13% Similarity=0.029 Sum_probs=71.6
Q ss_pred CCCccchhHHHHhhhhcCCCcCCccchhhhhhccccccCccccccchhhHHhh-hccCCChhhHHHHhhhccCCCCceee
Q 048591 2 ENGENVRLDIVPTGGPLRVTYQGWPFLILYHGSISLEQNIEEAIEGPMGRLTV-ISCKLPFHLKLCFLYLSVFPAHLEIS 80 (286)
Q Consensus 2 ~kC~GlPLal~~ig~~L~~~~~~W~~~~~~l~~~~~~~~~~~~~~~i~~~L~~-Sy~~L~~~~k~cFl~~a~Fp~~~~i~ 80 (286)
+.|+|.|+++..++..++.....-.. ....+.. .. ...+...+.- -++.||++.+..++..|+++. ++
T Consensus 213 ~~t~Gwp~~l~l~~~~~~~~~~~~~~---~~~~~~~-~~----~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~~---~~ 281 (903)
T PRK04841 213 DDVEGWATALQLIALSARQNNSSLHD---SARRLAG-IN----ASHLSDYLVEEVLDNVDLETRHFLLRCSVLRS---MN 281 (903)
T ss_pred HHhCChHHHHHHHHHHHhhCCCchhh---hhHhhcC-CC----chhHHHHHHHHHHhcCCHHHHHHHHHhccccc---CC
Confidence 46899999999999877652110011 1111100 00 0235554433 378999999999999999862 33
Q ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHCCCccccccCCCCCEeeEEcChhHHHHHHHhh
Q 048591 81 TRQLYHLWIAEGFIPDNSEATAEKYLEQLINRGFVKANKRRTGGTIHTCSIPCRCRPVLLAVA 143 (286)
Q Consensus 81 ~~~li~~w~a~g~i~~~~~~~~~~~l~~L~~~~li~~~~~~~~~~~~~~~mhdlv~~l~~~i~ 143 (286)
. .+... +.. .+.+...++.|.+.+++...... .+ ..|+.|++++++.+...
T Consensus 282 ~-~l~~~-----l~~---~~~~~~~L~~l~~~~l~~~~~~~-~~--~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 282 D-ALIVR-----VTG---EENGQMRLEELERQGLFIQRMDD-SG--EWFRYHPLFASFLRHRC 332 (903)
T ss_pred H-HHHHH-----HcC---CCcHHHHHHHHHHCCCeeEeecC-CC--CEEehhHHHHHHHHHHH
Confidence 2 22221 111 12356788999999987532211 11 46788999999988764
No 77
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=89.23 E-value=0.2 Score=26.19 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=9.6
Q ss_pred ccceeeeccccccccch
Q 048591 236 LLRYLKLNIPSLKILPS 252 (286)
Q Consensus 236 ~L~~L~L~~~~i~~LP~ 252 (286)
+|++|++++|++++||+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45555555555555554
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.87 E-value=0.33 Score=24.62 Aligned_cols=13 Identities=46% Similarity=0.445 Sum_probs=7.6
Q ss_pred CCccEEecCCCCc
Q 048591 259 LNLYTLDMPFSYI 271 (286)
Q Consensus 259 ~~L~~L~l~~~~l 271 (286)
++|++|+|++|++
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 5667777777766
No 79
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=83.06 E-value=0.78 Score=24.02 Aligned_cols=14 Identities=29% Similarity=0.221 Sum_probs=6.8
Q ss_pred cccceeeecccccc
Q 048591 235 FLLRYLKLNIPSLK 248 (286)
Q Consensus 235 ~~L~~L~L~~~~i~ 248 (286)
++|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555443
No 80
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=79.60 E-value=8.9 Score=32.95 Aligned_cols=89 Identities=15% Similarity=0.001 Sum_probs=51.6
Q ss_pred CCCCeeEEEEecCCCCCCCCchhh---------hhhcCCCceEEEEeeCCCCccCchhh-----ccccccceeeeccccc
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWG---------IICLMLEFLRVLDLGSLVLIQYPSGI-----ENLFLLRYLKLNIPSL 247 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~---------~~~~~l~~Lr~L~l~~~~l~~lp~~i-----~~L~~L~~L~L~~~~i 247 (286)
+...|..|.+.+|......+--+. .-..+-+.|++.....|++...|... ..-.+|+.+.+..|.|
T Consensus 118 ~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgI 197 (388)
T COG5238 118 SSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGI 197 (388)
T ss_pred cCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCc
Confidence 456667777766665432211111 12234556777777777766555432 2224677888888877
Q ss_pred cc------cchhHhhCCCCccEEecCCCCc
Q 048591 248 KI------LPSSLLSNLLNLYTLDMPFSYI 271 (286)
Q Consensus 248 ~~------LP~~i~~~L~~L~~L~l~~~~l 271 (286)
+. +-..+ ..+++|+.||+++|-+
T Consensus 198 rpegv~~L~~~gl-~y~~~LevLDlqDNtf 226 (388)
T COG5238 198 RPEGVTMLAFLGL-FYSHSLEVLDLQDNTF 226 (388)
T ss_pred CcchhHHHHHHHH-HHhCcceeeeccccch
Confidence 51 11133 5678899999998865
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.91 E-value=0.93 Score=36.79 Aligned_cols=61 Identities=21% Similarity=0.033 Sum_probs=30.2
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCC-CccC-chhhccccccceeeecc
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLV-LIQY-PSGIENLFLLRYLKLNI 244 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l~~l-p~~i~~L~~L~~L~L~~ 244 (286)
+++.+++|.+.++..-. .|.+...-.-.++|+.|++++|. |++- -..+..+++|+.|.+++
T Consensus 123 ~l~~i~~l~l~~ck~~d--D~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFD--DWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred ccchhhhheeccccchh--hHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 44555555555444321 11222222345566777777666 5532 24455666666665554
No 82
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=75.83 E-value=1.8 Score=36.97 Aligned_cols=92 Identities=11% Similarity=0.016 Sum_probs=65.1
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCc----cCchh-------hccccccceeeecccccc-c
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI----QYPSG-------IENLFLLRYLKLNIPSLK-I 249 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~----~lp~~-------i~~L~~L~~L~L~~~~i~-~ 249 (286)
.+..+..+++++|.+.......+...+.+-++|++.+++.-... ++|++ +-++++|+..+||.|.+. +
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 57788899999998864221234556677888999998865432 44443 345689999999998754 3
Q ss_pred cch----hHhhCCCCccEEecCCCCcccc
Q 048591 250 LPS----SLLSNLLNLYTLDMPFSYIDHT 274 (286)
Q Consensus 250 LP~----~i~~~L~~L~~L~l~~~~l~~l 274 (286)
.|+ -| ++-+.|.+|.+.+|.++.+
T Consensus 108 ~~e~L~d~i-s~~t~l~HL~l~NnGlGp~ 135 (388)
T COG5238 108 FPEELGDLI-SSSTDLVHLKLNNNGLGPI 135 (388)
T ss_pred cchHHHHHH-hcCCCceeEEeecCCCCcc
Confidence 444 45 6778999999999977544
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.90 E-value=1.1 Score=36.48 Aligned_cols=81 Identities=15% Similarity=-0.065 Sum_probs=48.5
Q ss_pred CeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCC-CccC-chhhc-cccccceeeecccc-ccccchhHhhCCCC
Q 048591 185 HMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLV-LIQY-PSGIE-NLFLLRYLKLNIPS-LKILPSSLLSNLLN 260 (286)
Q Consensus 185 ~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l~~l-p~~i~-~L~~L~~L~L~~~~-i~~LP~~i~~~L~~ 260 (286)
.++.++-.+..+.. .--..+..++.++.|.+.+|. +... -+.++ -..+|+.|++++|. |++---..+.++++
T Consensus 102 ~IeaVDAsds~I~~----eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lkn 177 (221)
T KOG3864|consen 102 KIEAVDASDSSIMY----EGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKN 177 (221)
T ss_pred eEEEEecCCchHHH----HHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhh
Confidence 34555555544432 112445666677777777776 4311 12222 35689999999885 77443322388889
Q ss_pred ccEEecCCC
Q 048591 261 LYTLDMPFS 269 (286)
Q Consensus 261 L~~L~l~~~ 269 (286)
|+.|.+.+=
T Consensus 178 Lr~L~l~~l 186 (221)
T KOG3864|consen 178 LRRLHLYDL 186 (221)
T ss_pred hHHHHhcCc
Confidence 988887663
No 84
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=70.19 E-value=0.65 Score=41.76 Aligned_cols=63 Identities=19% Similarity=0.121 Sum_probs=28.7
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCC-CccC--chhhccccccceeeecccc
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLV-LIQY--PSGIENLFLLRYLKLNIPS 246 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l~~l--p~~i~~L~~L~~L~L~~~~ 246 (286)
.++++..|.+.++...... .....-..++.|+.|++..|. ++.. -.-....++|.||+++++.
T Consensus 162 ~CpnIehL~l~gc~~iTd~--s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~ 227 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDS--SLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCP 227 (483)
T ss_pred hCCchhhhhhhcceeccHH--HHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCc
Confidence 4555555555444432111 222333455566666666644 3311 1122234556666666653
No 85
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=66.29 E-value=3.7 Score=37.71 Aligned_cols=88 Identities=20% Similarity=0.081 Sum_probs=47.8
Q ss_pred CCCCeeEEEEecC-CCCCCCCchhhhhhcCCCceEEEEeeCCC-CccC-chhhcc-ccccceeeecccc-cc--ccchhH
Q 048591 182 DDSHMHSLLYFTS-KSDHLDPIDWGIICLMLEFLRVLDLGSLV-LIQY-PSGIEN-LFLLRYLKLNIPS-LK--ILPSSL 254 (286)
Q Consensus 182 ~~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l~~l-p~~i~~-L~~L~~L~L~~~~-i~--~LP~~i 254 (286)
.+++|+.|.+.++ ................++.|+.|+++++. ++.. -..+.. .++|+.|.+.++. ++ .+-.-.
T Consensus 212 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~ 291 (482)
T KOG1947|consen 212 KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIA 291 (482)
T ss_pred hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHH
Confidence 6777777777652 11111100122344556777777777776 4421 122222 5577777766664 43 222223
Q ss_pred hhCCCCccEEecCCCC
Q 048591 255 LSNLLNLYTLDMPFSY 270 (286)
Q Consensus 255 ~~~L~~L~~L~l~~~~ 270 (286)
..+++|++|++++|.
T Consensus 292 -~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 292 -ERCPSLRELDLSGCH 306 (482)
T ss_pred -HhcCcccEEeeecCc
Confidence 567778888888774
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=64.77 E-value=5 Score=21.16 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=10.1
Q ss_pred CCccEEecCCCCcc
Q 048591 259 LNLYTLDMPFSYID 272 (286)
Q Consensus 259 ~~L~~L~l~~~~l~ 272 (286)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46778888887763
No 87
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=60.40 E-value=3.6 Score=37.18 Aligned_cols=64 Identities=23% Similarity=0.107 Sum_probs=43.7
Q ss_pred hhhcCCCceEEEEeeCCC-Cc-----cCchhhccccccceeeeccccc-c-ccchhHhhCCCCccEEecCCCC
Q 048591 206 IICLMLEFLRVLDLGSLV-LI-----QYPSGIENLFLLRYLKLNIPSL-K-ILPSSLLSNLLNLYTLDMPFSY 270 (286)
Q Consensus 206 ~~~~~l~~Lr~L~l~~~~-l~-----~lp~~i~~L~~L~~L~L~~~~i-~-~LP~~i~~~L~~L~~L~l~~~~ 270 (286)
..-.+.+.||+|.++.|. ++ .+-..-+.+.+|..+.|+++.. . ..-+.. ...++|+.+++-+|.
T Consensus 366 sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l-~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 366 SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL-SICRNLERIELIDCQ 437 (483)
T ss_pred hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHH-hhCcccceeeeechh
Confidence 344567788888888776 33 2344456678888898988863 2 333344 677889888888884
No 88
>PF14162 YozD: YozD-like protein
Probab=52.42 E-value=19 Score=22.09 Aligned_cols=28 Identities=21% Similarity=0.540 Sum_probs=18.0
Q ss_pred HHccCCCC--CHHHHHHHHHHHHHHCCCcc
Q 048591 89 IAEGFIPD--NSEATAEKYLEQLINRGFVK 116 (286)
Q Consensus 89 ~a~g~i~~--~~~~~~~~~l~~L~~~~li~ 116 (286)
+..||++. ..+++|+--|+-|+.+|+|.
T Consensus 22 ~kRGyvP~e~El~eiADItFeYll~K~iId 51 (57)
T PF14162_consen 22 VKRGYVPTEEELEEIADITFEYLLEKCIID 51 (57)
T ss_pred HHccCCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 34466665 56666666677777777664
No 89
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=51.65 E-value=10 Score=19.38 Aligned_cols=15 Identities=33% Similarity=0.246 Sum_probs=11.7
Q ss_pred CCCccEEecCCCC-cc
Q 048591 258 LLNLYTLDMPFSY-ID 272 (286)
Q Consensus 258 L~~L~~L~l~~~~-l~ 272 (286)
+++|+.|++++|. +.
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 3689999999994 53
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=41.68 E-value=20 Score=33.78 Aligned_cols=64 Identities=22% Similarity=0.204 Sum_probs=43.4
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCC--CCccCchhhccc--cccceeeecccccc
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSL--VLIQYPSGIENL--FLLRYLKLNIPSLK 248 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~--~l~~lp~~i~~L--~~L~~L~L~~~~i~ 248 (286)
+.+.+.++.+.+|.....+ .+...-...|+|..|+|++| .+...+ ++.++ ..|+.|-+.||.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld--~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLD--ALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchh--hhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccc
Confidence 6778888888888876654 45556677888899999998 343222 23222 24778888888753
No 91
>PF13730 HTH_36: Helix-turn-helix domain
Probab=39.53 E-value=88 Score=18.96 Aligned_cols=52 Identities=21% Similarity=0.382 Sum_probs=30.2
Q ss_pred CCChhhHHHHhhhccCCCC--ceeeHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHCCCc
Q 048591 58 KLPFHLKLCFLYLSVFPAH--LEISTRQLYHLWIAEGFIPDNSEATAEKYLEQLINRGFV 115 (286)
Q Consensus 58 ~L~~~~k~cFl~~a~Fp~~--~~i~~~~li~~w~a~g~i~~~~~~~~~~~l~~L~~~~li 115 (286)
+|++..+..+.+++-|..+ ..++-.+-+.... | -.......++++|+++|+|
T Consensus 2 ~Ls~~~~~v~~~l~~~~~~~~~~~pS~~~la~~~--g----~s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 2 NLSPTAKLVYLYLASYANKNGGCFPSQETLAKDL--G----VSRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHH--C----cCHHHHHHHHHHHHHCcCC
Confidence 5777777787777665422 1222112122222 2 2266778889999999875
No 92
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=37.56 E-value=17 Score=33.24 Aligned_cols=84 Identities=23% Similarity=0.010 Sum_probs=48.8
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCC-Cc--cCchhhccccccceeeecccc-cc--ccchhHh
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLV-LI--QYPSGIENLFLLRYLKLNIPS-LK--ILPSSLL 255 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l~--~lp~~i~~L~~L~~L~L~~~~-i~--~LP~~i~ 255 (286)
.+++|+.+.+......... .+......+++|+.|.+.+|. ++ .+-.-...+++|+.|+++++. +. .+....
T Consensus 241 ~~~~L~~l~l~~~~~isd~--~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~- 317 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDI--GLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALL- 317 (482)
T ss_pred hcCCcCccchhhhhccCch--hHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHH-
Confidence 5677788877776632211 233333447788888877776 54 233334456779999998875 32 233333
Q ss_pred hCCCCccEEecCC
Q 048591 256 SNLLNLYTLDMPF 268 (286)
Q Consensus 256 ~~L~~L~~L~l~~ 268 (286)
.++++|+.|.+..
T Consensus 318 ~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 318 KNCPNLRELKLLS 330 (482)
T ss_pred HhCcchhhhhhhh
Confidence 4566665554433
No 93
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=34.73 E-value=1.3e+02 Score=19.63 Aligned_cols=41 Identities=17% Similarity=0.417 Sum_probs=31.6
Q ss_pred eeHHHHHHHHHH--ccCCCCCHHHHHHHHHHHHHHCCCccccccC
Q 048591 79 ISTRQLYHLWIA--EGFIPDNSEATAEKYLEQLINRGFVKANKRR 121 (286)
Q Consensus 79 i~~~~li~~w~a--~g~i~~~~~~~~~~~l~~L~~~~li~~~~~~ 121 (286)
+.-.++|.+.+. +|++ ...+.|..+-+.|++.++|+.+...
T Consensus 18 F~G~e~v~WL~~~~~~~~--~~r~eA~~l~q~Ll~~g~i~~v~~~ 60 (74)
T PF00610_consen 18 FTGSEAVDWLMDNFEGFV--RDREEAVQLGQELLDHGFIEHVSDK 60 (74)
T ss_dssp EEHHHHHHHHHHTSCTST--SSHHHHHHHHHHHHHCTSEEESSSS
T ss_pred eEhHHHHHHHHHhccccc--cCHHHHHHHHHHHHHCCCEEECCCC
Confidence 456778887776 6666 4566788899999999999987654
No 94
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=32.52 E-value=2.6 Score=39.30 Aligned_cols=88 Identities=23% Similarity=0.086 Sum_probs=46.3
Q ss_pred CCCeeEEEEecCCCCCCCCchhhhhhcCCCc-eEEEEeeCCCCc-----cCchhhccc-cccceeeecccccc-----cc
Q 048591 183 DSHMHSLLYFTSKSDHLDPIDWGIICLMLEF-LRVLDLGSLVLI-----QYPSGIENL-FLLRYLKLNIPSLK-----IL 250 (286)
Q Consensus 183 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~-Lr~L~l~~~~l~-----~lp~~i~~L-~~L~~L~L~~~~i~-----~L 250 (286)
..++++|.+..+......-......+...+. ++.|++..|.+. .+.+.+..+ .+++.++++.|.|. .+
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 4556666666655542111122334444444 555666666544 223333344 45666666666553 45
Q ss_pred chhHhhCCCCccEEecCCCCc
Q 048591 251 PSSLLSNLLNLYTLDMPFSYI 271 (286)
Q Consensus 251 P~~i~~~L~~L~~L~l~~~~l 271 (286)
+..+ ..+.++++|.+..|.+
T Consensus 283 ~~~l-~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 283 AEVL-VSCRQLEELSLSNNPL 302 (478)
T ss_pred HHHH-hhhHHHHHhhcccCcc
Confidence 5555 5666677777766654
No 95
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=32.22 E-value=1.2e+02 Score=21.01 Aligned_cols=39 Identities=15% Similarity=0.297 Sum_probs=30.7
Q ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHCCCccccccC
Q 048591 81 TRQLYHLWIAEGFIPDNSEATAEKYLEQLINRGFVKANKRR 121 (286)
Q Consensus 81 ~~~li~~w~a~g~i~~~~~~~~~~~l~~L~~~~li~~~~~~ 121 (286)
-.++|.+.+..|.+ ...+.|..+.+.|++.++|+.+...
T Consensus 35 GsElVdWL~~~~~~--~sR~eAv~lgq~Ll~~gii~HV~~~ 73 (85)
T cd04441 35 GSEFIDWLLQEGEA--ESRREAVQLCRRLLEHGIIQHVSNK 73 (85)
T ss_pred chHHHHHHHHcCCC--CCHHHHHHHHHHHHHCCCEEecCCC
Confidence 45688888888865 4456688899999999999987643
No 96
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=32.21 E-value=1.2e+02 Score=21.41 Aligned_cols=39 Identities=21% Similarity=0.211 Sum_probs=31.3
Q ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHCCCccccccC
Q 048591 81 TRQLYHLWIAEGFIPDNSEATAEKYLEQLINRGFVKANKRR 121 (286)
Q Consensus 81 ~~~li~~w~a~g~i~~~~~~~~~~~l~~L~~~~li~~~~~~ 121 (286)
-.++|.+.+..|-+. ..+.|..+-+.|++.++|+-+...
T Consensus 40 GsElVdWLi~~g~~~--tR~eAv~~gq~Ll~~gii~HV~~~ 78 (93)
T cd04440 40 ASKLVDWLLAQGDCR--TREEAVILGVGLCNNGFMHHVLEK 78 (93)
T ss_pred hhHHHHHHHHcCCCC--CHHHHHHHHHHHHhCCCEEecCCC
Confidence 356899999988774 466688899999999999877654
No 97
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=31.73 E-value=1.1e+02 Score=20.60 Aligned_cols=49 Identities=22% Similarity=0.398 Sum_probs=32.8
Q ss_pred HHHhhhccCCCCceeeHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHCCCcccccc
Q 048591 65 LCFLYLSVFPAHLEISTRQLYHLWIAEGFIPDNSEATAEKYLEQLINRGFVKANKR 120 (286)
Q Consensus 65 ~cFl~~a~Fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~l~~L~~~~li~~~~~ 120 (286)
++..|+|..+++..+..+++-..- | .........++.|...+++.....
T Consensus 12 ~~l~~la~~~~~~~~s~~eiA~~~---~----i~~~~l~kil~~L~~~Gli~s~~G 60 (83)
T PF02082_consen 12 RILLYLARHPDGKPVSSKEIAERL---G----ISPSYLRKILQKLKKAGLIESSRG 60 (83)
T ss_dssp HHHHHHHCTTTSC-BEHHHHHHHH---T----S-HHHHHHHHHHHHHTTSEEEETS
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHH---C----cCHHHHHHHHHHHhhCCeeEecCC
Confidence 456777777776656666654321 1 456777889999999999976653
No 98
>PF15385 SARG: Specifically androgen-regulated gene protein
Probab=31.58 E-value=24 Score=32.92 Aligned_cols=16 Identities=31% Similarity=0.366 Sum_probs=14.6
Q ss_pred hccCCChhhHHHHhhh
Q 048591 55 ISCKLPFHLKLCFLYL 70 (286)
Q Consensus 55 Sy~~L~~~~k~cFl~~ 70 (286)
||++|..++|.|+||+
T Consensus 7 Sl~~LS~EEkecLlFl 22 (497)
T PF15385_consen 7 SLDYLSAEEKECLLFL 22 (497)
T ss_pred cccccchhhHHHHHHH
Confidence 8999999999999973
No 99
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=31.18 E-value=1.3e+02 Score=20.52 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=30.1
Q ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHCCCccccccC
Q 048591 81 TRQLYHLWIAEGFIPDNSEATAEKYLEQLINRGFVKANKRR 121 (286)
Q Consensus 81 ~~~li~~w~a~g~i~~~~~~~~~~~l~~L~~~~li~~~~~~ 121 (286)
-.++|.+.+..|-+ ...+.|..+-+.|++.++|+.+...
T Consensus 31 GselVdWL~~~~~~--~~R~eAv~~gq~Ll~~g~i~hV~~~ 69 (81)
T cd04448 31 GKELVNWLIRQGKA--ATRVQAIAIGQALLDAGWIECVSDD 69 (81)
T ss_pred hHHHHHHHHHcCCC--CCHHHHHHHHHHHHHCCCEEecCCC
Confidence 35688888887766 3455688889999999999987654
No 100
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=30.24 E-value=1.4e+02 Score=20.48 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=30.0
Q ss_pred eHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHCCCcccccc
Q 048591 80 STRQLYHLWIAEGFIPDNSEATAEKYLEQLINRGFVKANKR 120 (286)
Q Consensus 80 ~~~~li~~w~a~g~i~~~~~~~~~~~l~~L~~~~li~~~~~ 120 (286)
.-.++|.+.+..|.+. ....|..+-+.|++.++|..+..
T Consensus 32 ~GselVdWL~~~~~~~--sR~eAv~lg~~Ll~~G~i~HV~~ 70 (83)
T cd04443 32 CGCDLVSWLIEVGLAQ--DRGEAVLYGRRLLQGGVLQHITN 70 (83)
T ss_pred cHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHCCCEEecCC
Confidence 3467898777777764 34568888999999999998764
No 101
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=28.43 E-value=1.5e+02 Score=18.25 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=37.3
Q ss_pred CCChhhHHHHhhhccCCCCceeeHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHCCCccccccCCC
Q 048591 58 KLPFHLKLCFLYLSVFPAHLEISTRQLYHLWIAEGFIPDNSEATAEKYLEQLINRGFVKANKRRTG 123 (286)
Q Consensus 58 ~L~~~~k~cFl~~a~Fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~l~~L~~~~li~~~~~~~~ 123 (286)
+|+...-.++.+++-+|++ .+...+|.+.+- -........++.|.+++++.......+
T Consensus 2 glt~~q~~vL~~l~~~~~~-~~t~~~la~~l~-------~~~~~vs~~v~~L~~~Glv~r~~~~~D 59 (62)
T PF12802_consen 2 GLTPSQFRVLMALARHPGE-ELTQSELAERLG-------ISKSTVSRIVKRLEKKGLVERERDPGD 59 (62)
T ss_dssp TSTHHHHHHHHHHHHSTTS-GEEHHHHHHHHT-------S-HHHHHHHHHHHHHTTSEEEEE-SSS
T ss_pred ccCHHHHHHHHHHHHCCCC-CcCHHHHHHHHC-------cCHHHHHHHHHHHHHCCCEEEeCCCCC
Confidence 4566666777777877776 345555544432 224556678999999999987665443
No 102
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=26.41 E-value=96 Score=19.59 Aligned_cols=32 Identities=13% Similarity=0.321 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHCCCccccccCCCCCEeeEEc
Q 048591 100 ATAEKYLEQLINRGFVKANKRRTGGTIHTCSI 131 (286)
Q Consensus 100 ~~~~~~l~~L~~~~li~~~~~~~~~~~~~~~m 131 (286)
..+...++.|+++++++......+++...+..
T Consensus 33 ~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~L 64 (68)
T PF13463_consen 33 STVSRIIKKLEEKGLVEKERDPHDKRSKRYRL 64 (68)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE
T ss_pred HHHHHHHHHHHHCCCEEecCCCCcCCeeEEEe
Confidence 34557899999999998877766766555554
No 103
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=25.84 E-value=5 Score=37.40 Aligned_cols=65 Identities=22% Similarity=0.144 Sum_probs=30.7
Q ss_pred CCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCc-----cCchhhc----cccccceeeecccccc
Q 048591 184 SHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-----QYPSGIE----NLFLLRYLKLNIPSLK 248 (286)
Q Consensus 184 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp~~i~----~L~~L~~L~L~~~~i~ 248 (286)
+.+++|.+..+.........+...+.....++.++++.|.+. .++..+. ...++++|++++|.+.
T Consensus 144 ~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 144 CLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred HHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 344445544444433222233444555566666666666542 1222222 3455666666665543
No 104
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=25.57 E-value=35 Score=16.59 Aligned_cols=13 Identities=31% Similarity=0.690 Sum_probs=5.5
Q ss_pred cEEecCCCCcccc
Q 048591 262 YTLDMPFSYIDHT 274 (286)
Q Consensus 262 ~~L~l~~~~l~~l 274 (286)
-.|++++++++++
T Consensus 3 VeL~m~~S~lekL 15 (20)
T PF07725_consen 3 VELNMPYSKLEKL 15 (20)
T ss_pred EEEECCCCChHHh
Confidence 3444444444333
No 105
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=25.49 E-value=2.1e+02 Score=20.30 Aligned_cols=39 Identities=18% Similarity=0.371 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHHHCCCccccccCCCCCEeeEEcChhHHHH
Q 048591 97 NSEATAEKYLEQLINRGFVKANKRRTGGTIHTCSIPCRCRPV 138 (286)
Q Consensus 97 ~~~~~~~~~l~~L~~~~li~~~~~~~~~~~~~~~mhdlv~~l 138 (286)
.....|..|++.|++++++...+. |+...|...+-=.++
T Consensus 43 lny~~~~~yi~~L~~~Gli~~~~~---~~~~~y~lT~KG~~f 81 (95)
T COG3432 43 LNYKRAQKYIEMLVEKGLIIKQDN---GRRKVYELTEKGKRF 81 (95)
T ss_pred cCHHHHHHHHHHHHhCCCEEeccC---CccceEEEChhHHHH
Confidence 457889999999999997776553 222356666654444
No 106
>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=25.09 E-value=1.9e+02 Score=19.71 Aligned_cols=40 Identities=10% Similarity=0.173 Sum_probs=30.5
Q ss_pred eHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHCCCccccccC
Q 048591 80 STRQLYHLWIAEGFIPDNSEATAEKYLEQLINRGFVKANKRR 121 (286)
Q Consensus 80 ~~~~li~~w~a~g~i~~~~~~~~~~~l~~L~~~~li~~~~~~ 121 (286)
.-.++|.+.+..+.+.. .+.|..+-+.|++.++|..+...
T Consensus 30 ~GselVdWL~~~~~~~~--r~eAv~lg~~Ll~~G~i~HV~~~ 69 (81)
T cd04439 30 LGNEFVSWLLEIGEISK--PEEGVNLGQALLENGIIHHVSDK 69 (81)
T ss_pred EhHHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCEEecCCC
Confidence 45678987777776642 45678889999999999987653
No 107
>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=23.72 E-value=2e+02 Score=19.65 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=29.8
Q ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHCCCcccccc
Q 048591 81 TRQLYHLWIAEGFIPDNSEATAEKYLEQLINRGFVKANKR 120 (286)
Q Consensus 81 ~~~li~~w~a~g~i~~~~~~~~~~~l~~L~~~~li~~~~~ 120 (286)
-.++|.+.+..|.+ ...+.|..+-+.|++.++|+.+..
T Consensus 31 GselVdWL~~~~~~--~sR~eAv~lgq~Ll~~gvi~HV~~ 68 (82)
T cd04442 31 GKELIDWLIEHKEA--SDRETAIKIMQKLLDHSIIHHVCD 68 (82)
T ss_pred cHHHHHHHHHcCCC--CCHHHHHHHHHHHHHCCCEEeccC
Confidence 35688888888776 345668889999999999998754
No 108
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=22.37 E-value=61 Score=30.65 Aligned_cols=62 Identities=19% Similarity=0.052 Sum_probs=42.8
Q ss_pred hcCCCceEEEEeeCCCCccC---chhhccccccceeeeccc--cccccchhHhhCC--CCccEEecCCCCc
Q 048591 208 CLMLEFLRVLDLGSLVLIQY---PSGIENLFLLRYLKLNIP--SLKILPSSLLSNL--LNLYTLDMPFSYI 271 (286)
Q Consensus 208 ~~~l~~Lr~L~l~~~~l~~l---p~~i~~L~~L~~L~L~~~--~i~~LP~~i~~~L--~~L~~L~l~~~~l 271 (286)
-.+.+.+..+.|++|++..+ ..--...++|..|+|++| .+...++ + .++ ..|+.|-+.+|.+
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~e-l-~K~k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESE-L-DKLKGLPLEELVLEGNPL 282 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhh-h-hhhcCCCHHHeeecCCcc
Confidence 35677788889999986643 333345678999999998 4443332 3 333 4578899999876
No 109
>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin. Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).
Probab=21.94 E-value=2.1e+02 Score=18.73 Aligned_cols=40 Identities=13% Similarity=0.143 Sum_probs=30.5
Q ss_pred eeHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHCCCcccccc
Q 048591 79 ISTRQLYHLWIAEGFIPDNSEATAEKYLEQLINRGFVKANKR 120 (286)
Q Consensus 79 i~~~~li~~w~a~g~i~~~~~~~~~~~l~~L~~~~li~~~~~ 120 (286)
+.-.++|.+.+..+.+ ...+.|..+.+.|++.++|..+..
T Consensus 21 F~G~e~v~wL~~~~~~--~~r~eA~~l~~~ll~~g~i~~v~~ 60 (77)
T smart00049 21 FTGSELVDWLMDNLEI--IDREEAVHLGQLLLDEGLIHHVNG 60 (77)
T ss_pred eEcHHHHHHHHHcCCc--CCHHHHHHHHHHHHHCCCEEEeCC
Confidence 3456788877777775 345668888999999999998774
No 110
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=21.03 E-value=21 Score=33.23 Aligned_cols=53 Identities=30% Similarity=0.392 Sum_probs=33.0
Q ss_pred eEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCccEEecC
Q 048591 214 LRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMP 267 (286)
Q Consensus 214 Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~ 267 (286)
-..+.+++|.+-..|..+..|..|+-+++..+++..+|.-| +++.++..+.+.
T Consensus 106 ~t~~s~s~~~~~~~~~~vt~l~~~~~~~~~~~k~s~~~~li-~k~~~~~i~r~~ 158 (763)
T KOG4231|consen 106 VTSLSLSGCGLLVMPVEVTELPLLEKLCLEHNKLSVLPPLI-GKLKNLKILRVD 158 (763)
T ss_pred eeecccccceeccChHHHHhhhhhhHHHHHHhhhccchhhh-hhhhhHHHhccC
Confidence 34555666666666666666666666666666666666666 666666555443
No 111
>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins. Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=20.72 E-value=1.4e+02 Score=21.69 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=29.3
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHCCCccccccC
Q 048591 82 RQLYHLWIAEGFIPDNSEATAEKYLEQLINRGFVKANKRR 121 (286)
Q Consensus 82 ~~li~~w~a~g~i~~~~~~~~~~~l~~L~~~~li~~~~~~ 121 (286)
.++|.+.+..+... ....|..+-+.|++.++|+.+...
T Consensus 35 se~VDWLv~~~~~i--~R~EAv~l~q~Lmd~gli~hV~~~ 72 (109)
T cd04444 35 SALVDWLISNSFAA--SRLEAVTLASMLMEENFLRPVGVR 72 (109)
T ss_pred hHHHHHHHHCCCCC--CHHHHHHHHHHHHhCCchhhHHHH
Confidence 45788888888874 455577888899999999987743
Done!