Query 048591
Match_columns 286
No_of_seqs 320 out of 2096
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 19:08:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048591.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048591hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.9 3.8E-23 1.3E-27 192.8 2.2 131 2-147 324-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.7 2.6E-18 8.7E-23 173.7 9.7 135 2-146 315-452 (1249)
3 1vt4_I APAF-1 related killer D 99.7 1.2E-17 4.2E-22 161.4 4.8 111 4-140 323-437 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.6 6.8E-16 2.3E-20 145.1 7.9 129 2-143 315-449 (591)
5 2je0_A Acidic leucine-rich nuc 99.4 2.7E-13 9.3E-18 104.3 7.6 118 161-285 16-143 (149)
6 2ell_A Acidic leucine-rich nuc 99.4 5.2E-13 1.8E-17 104.8 8.9 118 161-285 23-150 (168)
7 3e6j_A Variable lymphocyte rec 99.4 7E-13 2.4E-17 109.7 9.6 121 160-285 38-162 (229)
8 4fcg_A Uncharacterized protein 99.4 9.6E-13 3.3E-17 114.8 8.5 119 162-285 127-256 (328)
9 2v9t_B SLIT homolog 2 protein 99.4 1.6E-12 5.3E-17 106.9 8.8 122 160-285 30-155 (220)
10 1a9n_A U2A', U2A'; complex (nu 99.4 1.1E-12 3.6E-17 104.0 7.4 118 161-285 18-143 (176)
11 4ezg_A Putative uncharacterize 99.4 1.9E-12 6.5E-17 104.4 9.0 119 160-285 64-184 (197)
12 2o6s_A Variable lymphocyte rec 99.4 2.4E-12 8.1E-17 104.6 9.4 122 160-285 26-151 (208)
13 4fcg_A Uncharacterized protein 99.4 2.2E-12 7.5E-17 112.5 9.6 119 161-285 182-304 (328)
14 3m19_A Variable lymphocyte rec 99.3 2.9E-12 9.8E-17 107.3 9.1 121 161-285 58-182 (251)
15 2v70_A SLIT-2, SLIT homolog 2 99.3 2.1E-12 7.3E-17 106.1 8.0 120 161-285 31-156 (220)
16 1p9a_G Platelet glycoprotein I 99.3 3.2E-12 1.1E-16 109.5 9.3 122 160-285 75-198 (290)
17 3rfs_A Internalin B, repeat mo 99.3 3.6E-12 1.2E-16 108.0 8.8 121 161-285 84-208 (272)
18 3e6j_A Variable lymphocyte rec 99.3 5.3E-12 1.8E-16 104.3 9.6 99 183-285 39-138 (229)
19 1ogq_A PGIP-2, polygalacturona 99.3 3.5E-12 1.2E-16 110.4 8.4 116 162-282 50-173 (313)
20 2ell_A Acidic leucine-rich nuc 99.3 4.9E-12 1.7E-16 99.2 8.4 112 161-277 48-165 (168)
21 3m19_A Variable lymphocyte rec 99.3 5.5E-12 1.9E-16 105.6 9.0 106 162-271 83-191 (251)
22 2r9u_A Variable lymphocyte rec 99.3 7.2E-12 2.5E-16 99.1 9.2 111 166-282 16-128 (174)
23 1p9a_G Platelet glycoprotein I 99.3 5.3E-12 1.8E-16 108.1 8.1 121 160-285 53-175 (290)
24 4ezg_A Putative uncharacterize 99.3 1.3E-11 4.3E-16 99.6 9.5 117 161-285 43-162 (197)
25 4b8c_D Glucose-repressible alc 99.3 2E-12 6.7E-17 124.3 5.4 115 160-280 222-338 (727)
26 4g8a_A TOLL-like receptor 4; l 99.3 6.1E-12 2.1E-16 118.3 8.0 122 160-285 50-176 (635)
27 1dce_A Protein (RAB geranylger 99.3 5.9E-12 2E-16 117.6 7.4 111 163-280 442-554 (567)
28 2o6q_A Variable lymphocyte rec 99.3 1.7E-11 5.7E-16 103.8 9.5 121 161-285 60-184 (270)
29 2wfh_A SLIT homolog 2 protein 99.3 1.5E-11 5.2E-16 98.9 8.7 107 161-271 30-138 (193)
30 4b8c_D Glucose-repressible alc 99.3 3.1E-12 1.1E-16 122.9 5.3 101 179-285 219-319 (727)
31 2o6r_A Variable lymphocyte rec 99.3 1.7E-11 5.7E-16 97.0 8.8 116 160-279 26-144 (177)
32 3vq2_A TLR4, TOLL-like recepto 99.3 9.7E-12 3.3E-16 116.8 8.5 119 161-284 31-155 (606)
33 3rfs_A Internalin B, repeat mo 99.2 1.7E-11 5.8E-16 103.9 9.0 86 182-271 131-217 (272)
34 2o6q_A Variable lymphocyte rec 99.2 2E-11 6.9E-16 103.2 9.4 120 161-284 84-207 (270)
35 2o6r_A Variable lymphocyte rec 99.2 2.7E-11 9.4E-16 95.8 9.6 100 182-285 26-127 (177)
36 3g39_A Variable lymphocyte rec 99.2 2.6E-11 8.9E-16 95.5 8.8 105 166-276 13-119 (170)
37 2v9t_B SLIT homolog 2 protein 99.2 1.3E-11 4.5E-16 101.3 7.2 99 183-285 31-131 (220)
38 4g8a_A TOLL-like receptor 4; l 99.2 1.6E-11 5.6E-16 115.3 7.8 98 184-285 52-151 (635)
39 2wfh_A SLIT homolog 2 protein 99.2 3.3E-11 1.1E-15 97.0 8.5 98 183-285 30-129 (193)
40 1ozn_A Reticulon 4 receptor; N 99.2 3.2E-11 1.1E-15 102.7 8.7 120 161-285 104-228 (285)
41 1dce_A Protein (RAB geranylger 99.2 2.1E-11 7.3E-16 113.8 7.9 93 185-285 442-536 (567)
42 1ogq_A PGIP-2, polygalacturona 99.2 2.3E-11 7.8E-16 105.2 7.5 118 160-282 74-198 (313)
43 2xot_A Amphoterin-induced prot 99.2 3.2E-11 1.1E-15 106.4 8.5 110 162-275 64-179 (361)
44 1a9n_A U2A', U2A'; complex (nu 99.2 2E-11 6.9E-16 96.5 6.3 98 182-285 17-116 (176)
45 1ozn_A Reticulon 4 receptor; N 99.2 4E-11 1.4E-15 102.1 8.6 122 160-285 54-180 (285)
46 2z62_A TOLL-like receptor 4, v 99.2 3.2E-11 1.1E-15 102.2 7.7 119 161-284 51-175 (276)
47 1w8a_A SLIT protein; signaling 99.2 2.4E-11 8.4E-16 97.5 6.6 106 161-271 28-138 (192)
48 2o6s_A Variable lymphocyte rec 99.2 5.5E-11 1.9E-15 96.5 8.8 99 183-285 27-127 (208)
49 2je0_A Acidic leucine-rich nuc 99.2 1.5E-11 5E-16 94.5 4.9 99 182-285 15-116 (149)
50 2z63_A TOLL-like receptor 4, v 99.2 3.3E-11 1.1E-15 112.2 8.2 118 162-284 52-175 (570)
51 1h6t_A Internalin B; cell adhe 99.2 1.3E-10 4.5E-15 99.4 10.7 115 161-285 89-203 (291)
52 1h6u_A Internalin H; cell adhe 99.2 9.3E-11 3.2E-15 101.2 9.7 116 160-285 61-176 (308)
53 3o6n_A APL1; leucine-rich repe 99.2 2.6E-11 9E-16 107.9 6.2 110 162-275 69-181 (390)
54 1h6u_A Internalin H; cell adhe 99.2 1.6E-10 5.5E-15 99.7 10.6 113 162-284 107-219 (308)
55 2xot_A Amphoterin-induced prot 99.2 7.2E-11 2.5E-15 104.1 8.5 120 160-284 37-165 (361)
56 1xeu_A Internalin C; cellular 99.2 1E-10 3.5E-15 98.6 9.1 114 161-285 62-175 (263)
57 2r9u_A Variable lymphocyte rec 99.1 4.6E-11 1.6E-15 94.5 6.4 92 187-285 15-108 (174)
58 4eco_A Uncharacterized protein 99.1 3.5E-11 1.2E-15 114.0 6.2 120 160-285 204-356 (636)
59 4ecn_A Leucine-rich repeat pro 99.1 4.8E-11 1.7E-15 116.3 7.1 119 160-284 446-597 (876)
60 2z80_A TOLL-like receptor 2, v 99.1 5.2E-11 1.8E-15 104.6 6.4 117 162-283 52-175 (353)
61 1w8a_A SLIT protein; signaling 99.1 8E-11 2.7E-15 94.5 7.0 114 166-285 12-129 (192)
62 1h6t_A Internalin B; cell adhe 99.1 2.2E-10 7.4E-15 98.1 10.1 116 160-285 66-181 (291)
63 2v70_A SLIT-2, SLIT homolog 2 99.1 1.4E-10 4.8E-15 95.2 8.5 107 160-271 55-165 (220)
64 3o6n_A APL1; leucine-rich repe 99.1 4.2E-11 1.4E-15 106.5 5.8 88 182-274 246-333 (390)
65 2z62_A TOLL-like receptor 4, v 99.1 1.3E-10 4.4E-15 98.5 8.1 91 182-276 98-194 (276)
66 2xwt_C Thyrotropin receptor; s 99.1 8.3E-11 2.8E-15 97.5 6.8 115 161-280 54-177 (239)
67 3vq2_A TLR4, TOLL-like recepto 99.1 1.1E-10 3.9E-15 109.5 8.4 120 160-284 54-179 (606)
68 2z7x_B TOLL-like receptor 1, v 99.1 1.6E-10 5.4E-15 106.6 8.6 115 161-284 20-138 (520)
69 3v47_A TOLL-like receptor 5B a 99.1 1.4E-10 4.8E-15 105.1 8.1 118 162-284 275-397 (455)
70 2xwt_C Thyrotropin receptor; s 99.1 1E-10 3.5E-15 97.0 6.6 118 160-284 78-207 (239)
71 3o53_A Protein LRIM1, AGAP0063 99.1 8E-11 2.7E-15 101.9 6.1 71 211-282 190-262 (317)
72 3g39_A Variable lymphocyte rec 99.1 9.8E-11 3.4E-15 92.2 6.0 93 186-285 11-105 (170)
73 3zyi_A Leucine-rich repeat-con 99.1 1.6E-10 5.3E-15 105.0 8.2 113 160-276 73-189 (452)
74 3oja_A Leucine-rich immune mol 99.1 7.4E-11 2.5E-15 108.2 6.0 117 162-284 120-239 (487)
75 2z81_A CD282 antigen, TOLL-lik 99.1 9.1E-11 3.1E-15 108.8 6.5 118 162-284 26-150 (549)
76 1ziw_A TOLL-like receptor 3; i 99.1 9.6E-11 3.3E-15 111.5 6.7 121 160-285 23-148 (680)
77 3rgz_A Protein brassinosteroid 99.1 2.2E-10 7.7E-15 110.7 9.3 98 182-284 440-540 (768)
78 3oja_B Anopheles plasmodium-re 99.1 8.1E-11 2.8E-15 110.6 5.8 107 164-275 234-340 (597)
79 3oja_B Anopheles plasmodium-re 99.1 3.2E-10 1.1E-14 106.6 9.7 111 161-275 74-187 (597)
80 2z63_A TOLL-like receptor 4, v 99.1 2.1E-10 7.1E-15 106.8 8.3 121 160-285 26-152 (570)
81 3v47_A TOLL-like receptor 5B a 99.1 1.8E-10 6.1E-15 104.3 7.7 122 160-285 28-157 (455)
82 1m9s_A Internalin B; cell inva 99.1 3.9E-10 1.3E-14 106.0 10.0 115 161-285 86-200 (605)
83 4eco_A Uncharacterized protein 99.1 4.4E-10 1.5E-14 106.4 10.4 98 182-284 431-538 (636)
84 3zyj_A Leucine-rich repeat-con 99.1 3.2E-10 1.1E-14 102.5 8.6 104 161-268 63-169 (440)
85 4ecn_A Leucine-rich repeat pro 99.1 1.1E-10 3.8E-15 113.8 5.8 120 161-285 490-622 (876)
86 1xku_A Decorin; proteoglycan, 99.1 6.9E-10 2.4E-14 96.4 10.3 120 160-285 50-174 (330)
87 2id5_A Lingo-1, leucine rich r 99.0 2.5E-10 8.4E-15 104.2 7.5 98 182-284 78-178 (477)
88 1xeu_A Internalin C; cellular 99.0 4.3E-10 1.5E-14 94.8 8.5 91 182-283 61-151 (263)
89 2z80_A TOLL-like receptor 2, v 99.0 1.7E-10 5.8E-15 101.2 6.1 119 161-284 75-200 (353)
90 2z66_A Variable lymphocyte rec 99.0 1.3E-10 4.6E-15 99.8 5.3 117 162-281 126-246 (306)
91 4fmz_A Internalin; leucine ric 99.0 6.2E-10 2.1E-14 97.2 9.6 115 161-284 65-179 (347)
92 3rgz_A Protein brassinosteroid 99.0 4.5E-10 1.5E-14 108.6 9.5 118 161-283 441-563 (768)
93 2z66_A Variable lymphocyte rec 99.0 1.4E-10 4.8E-15 99.6 5.1 108 161-271 27-138 (306)
94 3j0a_A TOLL-like receptor 5; m 99.0 4.2E-10 1.4E-14 109.9 8.9 121 160-284 22-150 (844)
95 1o6v_A Internalin A; bacterial 99.0 4E-10 1.4E-14 102.7 8.1 113 162-284 46-158 (466)
96 2z7x_B TOLL-like receptor 1, v 99.0 2.4E-10 8.1E-15 105.4 6.6 111 166-285 4-118 (520)
97 3t6q_A CD180 antigen; protein- 99.0 2.6E-10 8.9E-15 107.1 6.8 106 161-271 32-141 (606)
98 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 5.4E-10 1.8E-14 104.2 8.8 107 160-273 50-160 (562)
99 3oja_A Leucine-rich immune mol 99.0 5.9E-10 2E-14 102.3 8.7 117 162-285 99-217 (487)
100 1wwl_A Monocyte differentiatio 99.0 1.6E-10 5.5E-15 99.8 4.3 120 161-285 172-299 (312)
101 3o53_A Protein LRIM1, AGAP0063 99.0 7E-10 2.4E-14 96.0 8.2 119 161-285 119-240 (317)
102 2ft3_A Biglycan; proteoglycan, 99.0 8.3E-10 2.8E-14 96.0 8.7 107 160-272 52-160 (332)
103 3zyi_A Leucine-rich repeat-con 99.0 6.2E-10 2.1E-14 101.0 8.1 122 161-284 122-268 (452)
104 1xku_A Decorin; proteoglycan, 99.0 7.5E-10 2.6E-14 96.1 8.2 109 162-277 171-281 (330)
105 1m9s_A Internalin B; cell inva 99.0 7.9E-10 2.7E-14 103.9 8.9 116 160-285 63-178 (605)
106 4fmz_A Internalin; leucine ric 99.0 1.9E-09 6.4E-14 94.1 10.6 117 161-285 220-336 (347)
107 2ft3_A Biglycan; proteoglycan, 99.0 3.9E-10 1.3E-14 98.1 6.2 113 164-285 35-150 (332)
108 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 1.2E-09 4.1E-14 101.8 9.9 122 161-285 352-500 (562)
109 1ds9_A Outer arm dynein; leuci 99.0 9.5E-12 3.3E-16 100.4 -4.1 106 162-274 48-155 (198)
110 3zyj_A Leucine-rich repeat-con 99.0 7.7E-10 2.6E-14 100.0 8.0 98 182-285 134-234 (440)
111 2id5_A Lingo-1, leucine rich r 99.0 1E-09 3.5E-14 100.1 8.3 120 161-284 79-202 (477)
112 1ds9_A Outer arm dynein; leuci 99.0 2.9E-11 9.9E-16 97.5 -2.2 99 179-285 43-143 (198)
113 2z81_A CD282 antigen, TOLL-lik 99.0 5.7E-10 2E-14 103.4 6.1 120 160-284 48-174 (549)
114 4glp_A Monocyte differentiatio 98.9 3.1E-10 1.1E-14 97.8 3.5 74 208-285 220-297 (310)
115 3t6q_A CD180 antigen; protein- 98.9 1E-09 3.6E-14 102.9 7.2 121 160-285 55-180 (606)
116 3bz5_A Internalin-J, INLJ; leu 98.9 1.3E-09 4.4E-14 99.2 7.5 95 162-269 64-158 (457)
117 1ziw_A TOLL-like receptor 3; i 98.9 1.7E-09 6E-14 102.8 8.6 70 208-277 532-602 (680)
118 4glp_A Monocyte differentiatio 98.9 2.5E-10 8.6E-15 98.4 2.2 118 161-279 144-271 (310)
119 1wwl_A Monocyte differentiatio 98.9 9.7E-10 3.3E-14 94.8 5.0 110 161-275 94-217 (312)
120 1o6v_A Internalin A; bacterial 98.9 5.1E-09 1.8E-13 95.3 9.9 61 208-271 261-321 (466)
121 3cvr_A Invasion plasmid antige 98.9 2.3E-09 7.8E-14 100.0 7.5 107 163-283 141-255 (571)
122 3cvr_A Invasion plasmid antige 98.9 2.4E-09 8.2E-14 99.8 7.2 106 163-285 121-233 (571)
123 3j0a_A TOLL-like receptor 5; m 98.9 3.3E-09 1.1E-13 103.6 8.2 117 160-281 46-171 (844)
124 2ifg_A High affinity nerve gro 98.9 2.1E-09 7.3E-14 93.9 6.1 93 175-273 23-117 (347)
125 2ifg_A High affinity nerve gro 98.8 3.6E-09 1.2E-13 92.4 7.0 77 203-280 23-101 (347)
126 3bz5_A Internalin-J, INLJ; leu 98.8 5.7E-09 2E-13 94.9 6.4 111 161-285 41-151 (457)
127 2ast_B S-phase kinase-associat 98.8 1.2E-09 4.3E-14 94.8 1.8 100 182-285 140-250 (336)
128 3g06_A SSPH2 (leucine-rich rep 98.8 1.4E-08 4.7E-13 95.7 8.5 89 183-283 220-309 (622)
129 2ast_B S-phase kinase-associat 98.8 2.9E-09 9.8E-14 92.5 3.6 120 161-285 92-225 (336)
130 3g06_A SSPH2 (leucine-rich rep 98.7 2.4E-08 8.4E-13 94.0 9.1 68 211-285 220-287 (622)
131 2ca6_A RAN GTPase-activating p 98.7 1.2E-08 4E-13 90.5 4.8 90 182-272 185-287 (386)
132 1jl5_A Outer protein YOPM; leu 98.7 4.5E-08 1.5E-12 88.9 8.6 109 162-276 131-254 (454)
133 1jl5_A Outer protein YOPM; leu 98.6 3.4E-08 1.2E-12 89.7 6.8 103 162-277 111-213 (454)
134 2ca6_A RAN GTPase-activating p 98.6 2.7E-08 9.2E-13 88.2 5.0 114 162-275 187-319 (386)
135 4ay9_X Follicle-stimulating ho 98.6 7.4E-08 2.5E-12 84.4 6.6 120 161-283 103-227 (350)
136 4ay9_X Follicle-stimulating ho 98.4 3.4E-07 1.2E-11 80.1 6.6 115 160-277 28-147 (350)
137 3goz_A Leucine-rich repeat-con 98.3 3.3E-07 1.1E-11 80.5 4.4 110 163-273 52-181 (362)
138 3goz_A Leucine-rich repeat-con 98.2 4.7E-07 1.6E-11 79.6 3.3 119 162-281 80-223 (362)
139 1z7x_W Ribonuclease inhibitor; 98.2 2.8E-07 9.5E-12 83.3 1.8 88 183-271 198-296 (461)
140 3rw6_A Nuclear RNA export fact 98.2 1.7E-06 5.7E-11 72.7 5.8 75 209-285 167-254 (267)
141 1z7x_W Ribonuclease inhibitor; 98.1 8.2E-07 2.8E-11 80.2 3.0 111 161-272 2-126 (461)
142 3un9_A NLR family member X1; l 98.0 1.9E-06 6.5E-11 76.1 3.2 109 163-272 127-252 (372)
143 3rw6_A Nuclear RNA export fact 98.0 5.4E-06 1.9E-10 69.6 4.6 82 182-266 168-258 (267)
144 3sb4_A Hypothetical leucine ri 97.9 7.2E-06 2.5E-10 70.9 5.1 97 183-285 225-324 (329)
145 3un9_A NLR family member X1; l 97.9 2.8E-06 9.6E-11 75.0 1.6 111 162-273 101-225 (372)
146 1io0_A Tropomodulin; LRR prote 97.9 5.5E-06 1.9E-10 65.7 2.9 110 162-272 36-164 (185)
147 3ogk_B Coronatine-insensitive 97.8 3.3E-06 1.1E-10 78.7 1.0 75 209-284 161-245 (592)
148 1io0_A Tropomodulin; LRR prote 97.8 6.4E-06 2.2E-10 65.3 1.8 92 180-272 32-136 (185)
149 3ogk_B Coronatine-insensitive 97.7 3E-05 1E-09 72.2 5.8 103 182-285 190-321 (592)
150 2p1m_B Transport inhibitor res 97.7 7.4E-06 2.5E-10 76.3 0.9 119 163-284 106-237 (594)
151 3e4g_A ATP synthase subunit S, 97.6 8.5E-05 2.9E-09 58.1 6.1 87 182-273 59-154 (176)
152 2ra8_A Uncharacterized protein 97.6 0.00012 4.1E-09 64.2 7.8 61 210-271 250-319 (362)
153 2p1m_B Transport inhibitor res 97.5 3.9E-05 1.3E-09 71.4 2.6 61 182-243 182-243 (594)
154 3rfe_A Platelet glycoprotein I 97.3 0.00024 8.1E-09 52.8 5.0 53 216-270 12-66 (130)
155 3sb4_A Hypothetical leucine ri 97.2 0.00053 1.8E-08 59.0 6.2 100 161-266 225-328 (329)
156 2ra8_A Uncharacterized protein 97.2 0.00026 9E-09 62.1 4.3 120 160-285 170-310 (362)
157 4fdw_A Leucine rich hypothetic 96.3 0.0064 2.2E-07 54.0 6.6 112 162-276 248-362 (401)
158 3e4g_A ATP synthase subunit S, 96.0 0.012 4.3E-07 45.7 5.8 86 161-249 60-154 (176)
159 4fdw_A Leucine rich hypothetic 95.6 0.015 5.2E-07 51.5 5.6 78 185-268 158-235 (401)
160 3rfe_A Platelet glycoprotein I 94.3 0.031 1.1E-06 41.1 3.3 35 213-247 32-67 (130)
161 1pgv_A TMD-1, tropomodulin TMD 93.8 0.027 9.3E-07 44.6 2.3 108 163-271 42-169 (197)
162 4fs7_A Uncharacterized protein 92.0 0.11 3.9E-06 45.4 4.0 95 182-284 295-390 (394)
163 4h09_A Hypothetical leucine ri 91.9 0.33 1.1E-05 42.0 6.8 59 207-266 281-340 (379)
164 4h09_A Hypothetical leucine ri 91.1 0.36 1.2E-05 41.8 6.1 116 162-284 217-335 (379)
165 4gt6_A Cell surface protein; l 90.5 0.49 1.7E-05 41.3 6.5 63 205-269 304-367 (394)
166 4gt6_A Cell surface protein; l 90.3 0.65 2.2E-05 40.5 7.1 96 182-285 263-360 (394)
167 1pgv_A TMD-1, tropomodulin TMD 90.3 0.25 8.4E-06 39.1 3.9 87 182-269 39-136 (197)
168 4fs7_A Uncharacterized protein 87.6 1.2 4.1E-05 38.8 6.8 76 206-284 291-368 (394)
169 2qen_A Walker-type ATPase; unk 65.8 8.7 0.0003 32.2 5.4 114 2-139 233-348 (350)
170 2fna_A Conserved hypothetical 63.1 12 0.00043 31.2 5.9 111 2-138 237-355 (357)
171 1w5s_A Origin recognition comp 59.9 3.5 0.00012 35.7 1.8 69 50-119 297-372 (412)
172 2vda_B Maltoporin; sugar trans 43.4 16 0.00056 17.9 1.8 18 3-20 7-24 (28)
173 3lqv_P Splicing factor 3B subu 20.9 32 0.0011 19.0 0.8 9 71-79 30-38 (39)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.86 E-value=3.8e-23 Score=192.84 Aligned_cols=131 Identities=17% Similarity=0.139 Sum_probs=104.1
Q ss_pred CCCccchhHHHHhhhhcCCCcCCccchhhhhhccccccCccccccchhhHHhhhccCCChhhHHHHh-----------hh
Q 048591 2 ENGENVRLDIVPTGGPLRVTYQGWPFLILYHGSISLEQNIEEAIEGPMGRLTVISCKLPFHLKLCFL-----------YL 70 (286)
Q Consensus 2 ~kC~GlPLal~~ig~~L~~~~~~W~~~~~~l~~~~~~~~~~~~~~~i~~~L~~Sy~~L~~~~k~cFl-----------~~ 70 (286)
++|+|+||||+++|+.|+.. .|+.. +.+.+..+.. ...+|..+|++||++||+++|.||+ ||
T Consensus 324 ~~c~GlPLAl~~~g~~l~~~--~w~~~-~~l~~~l~~~----~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~l 396 (549)
T 2a5y_B 324 ELSSGNPATLMMFFKSCEPK--TFEKM-AQLNNKLESR----GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFA 396 (549)
T ss_dssp HHHTTCHHHHHHHHTTCCSS--SHHHH-HHHHHHHHHH----CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGG
T ss_pred HHhCCChHHHHHHHHHhccc--hHHHH-HHhHHHhhcc----cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhhe
Confidence 47999999999999999763 46551 2333332221 1256999999999999999999999 99
Q ss_pred ccCCCCceeeHHHHHHHHHHc--cCCCC-----CHHHHHHHHHHHHHHCCCccccccCCCCCEeeEEcChhHHHHHHHhh
Q 048591 71 SVFPAHLEISTRQLYHLWIAE--GFIPD-----NSEATAEKYLEQLINRGFVKANKRRTGGTIHTCSIPCRCRPVLLAVA 143 (286)
Q Consensus 71 a~Fp~~~~i~~~~li~~w~a~--g~i~~-----~~~~~~~~~l~~L~~~~li~~~~~~~~~~~~~~~mhdlv~~l~~~i~ 143 (286)
|+||+++.|+ +++|+|+ ||+.. +.+++++ |+++|+++||++....+ ....|+|||+||++|+.++
T Consensus 397 s~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~ 468 (549)
T 2a5y_B 397 VVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVV 468 (549)
T ss_dssp GSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTS
T ss_pred eeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHH
Confidence 9999999999 8999999 99965 4788888 99999999999987643 3367999999999999988
Q ss_pred cccC
Q 048591 144 SEVE 147 (286)
Q Consensus 144 ~~~~ 147 (286)
.+++
T Consensus 469 ~~~~ 472 (549)
T 2a5y_B 469 DAQT 472 (549)
T ss_dssp CTHH
T ss_pred HHHH
Confidence 7764
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.74 E-value=2.6e-18 Score=173.73 Aligned_cols=135 Identities=16% Similarity=0.195 Sum_probs=108.7
Q ss_pred CCCccchhHHHHhhhhcCCCcCCccchhhhhhccccccC-c--cccccchhhHHhhhccCCChhhHHHHhhhccCCCCce
Q 048591 2 ENGENVRLDIVPTGGPLRVTYQGWPFLILYHGSISLEQN-I--EEAIEGPMGRLTVISCKLPFHLKLCFLYLSVFPAHLE 78 (286)
Q Consensus 2 ~kC~GlPLal~~ig~~L~~~~~~W~~~~~~l~~~~~~~~-~--~~~~~~i~~~L~~Sy~~L~~~~k~cFl~~a~Fp~~~~ 78 (286)
++|+|+||||+++|+.|+.....|+.+++.+....+..- . ....+.+..++.+||+.||+++|.||+|||+||+++.
T Consensus 315 ~~~~glPLal~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~ 394 (1249)
T 3sfz_A 315 KECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVK 394 (1249)
T ss_dssp HHTTTCHHHHHHHHHHHHHSSSCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCC
T ss_pred HHhCCCHHHHHHHHHHhhcChhHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCe
Confidence 479999999999999998844689984443333222211 1 1122469999999999999999999999999999999
Q ss_pred eeHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHCCCccccccCCCCCEeeEEcChhHHHHHHHhhccc
Q 048591 79 ISTRQLYHLWIAEGFIPDNSEATAEKYLEQLINRGFVKANKRRTGGTIHTCSIPCRCRPVLLAVASEV 146 (286)
Q Consensus 79 i~~~~li~~w~a~g~i~~~~~~~~~~~l~~L~~~~li~~~~~~~~~~~~~~~mhdlv~~l~~~i~~~~ 146 (286)
|+++.++.+|.++ ++.++.++++|++++|++... ++....|+|||++|++++..+.++
T Consensus 395 i~~~~~~~~~~~~-------~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 395 VPTKVLCVLWDLE-------TEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred eCHHHHHHHhCCC-------HHHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 9999999999765 467899999999999999654 334467999999999999887654
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.68 E-value=1.2e-17 Score=161.40 Aligned_cols=111 Identities=19% Similarity=0.178 Sum_probs=94.9
Q ss_pred CccchhHHHHhhhhcCC---CcCCccchhhhhhccccccCccccccchhhHHhhhccCCChhh-HHHHhhhccCCCCcee
Q 048591 4 GENVRLDIVPTGGPLRV---TYQGWPFLILYHGSISLEQNIEEAIEGPMGRLTVISCKLPFHL-KLCFLYLSVFPAHLEI 79 (286)
Q Consensus 4 C~GlPLal~~ig~~L~~---~~~~W~~~~~~l~~~~~~~~~~~~~~~i~~~L~~Sy~~L~~~~-k~cFl~~a~Fp~~~~i 79 (286)
|+|+||||+++|+.|++ +.++|+. . . ...+..+|++||+.||+++ |.||+|||+||+++.|
T Consensus 323 CgGLPLALkLaGs~Lr~k~~s~eeW~~---~--------~----~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I 387 (1221)
T 1vt4_I 323 LTTNPRRLSIIAESIRDGLATWDNWKH---V--------N----CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHSCSSHHHHHH---C--------S----CHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCE
T ss_pred hCCCHHHHHHHHHHHhCCCCCHHHHhc---C--------C----hhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCC
Confidence 99999999999999987 4455655 3 1 1579999999999999999 9999999999999999
Q ss_pred eHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHCCCccccccCCCCCEeeEEcChhHHHHHH
Q 048591 80 STRQLYHLWIAEGFIPDNSEATAEKYLEQLINRGFVKANKRRTGGTIHTCSIPCRCRPVLL 140 (286)
Q Consensus 80 ~~~~li~~w~a~g~i~~~~~~~~~~~l~~L~~~~li~~~~~~~~~~~~~~~mhdlv~~l~~ 140 (286)
+++.++.+|+++| ++.++.++++|+++||++... ....|+|||++++++.
T Consensus 388 ~~elLa~LW~aeG------eedAe~~L~eLvdRSLLq~d~-----~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 388 PTILLSLIWFDVI------KSDVMVVVNKLHKYSLVEKQP-----KESTISIPSIYLELKV 437 (1221)
T ss_dssp EHHHHHHHHCSSC------SHHHHHHHHHHHTSSSSSBCS-----SSSEEBCCCHHHHHHH
T ss_pred CHHHHHHHhcCCC------HHHHHHHHHHHHhhCCEEEeC-----CCCEEEehHHHHHHhc
Confidence 9999999999987 245889999999999999742 1256999999998653
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.61 E-value=6.8e-16 Score=145.06 Aligned_cols=129 Identities=17% Similarity=0.226 Sum_probs=103.6
Q ss_pred CCCccchhHHHHhhhhcCCCcCCccchhhhhhccccccCc------cccccchhhHHhhhccCCChhhHHHHhhhccCCC
Q 048591 2 ENGENVRLDIVPTGGPLRVTYQGWPFLILYHGSISLEQNI------EEAIEGPMGRLTVISCKLPFHLKLCFLYLSVFPA 75 (286)
Q Consensus 2 ~kC~GlPLal~~ig~~L~~~~~~W~~~~~~l~~~~~~~~~------~~~~~~i~~~L~~Sy~~L~~~~k~cFl~~a~Fp~ 75 (286)
++|+|+||||+.+|+.|+.....|+. +++.+...... ......+..++..||+.||++.|.||++||+||+
T Consensus 315 ~~~~G~PLal~~~a~~l~~~~~~w~~---~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~ 391 (591)
T 1z6t_A 315 KECKGSPLVVSLIGALLRDFPNRWEY---YLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQK 391 (591)
T ss_dssp HHHTTCHHHHHHHHHHHHHSTTCHHH---HHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCT
T ss_pred HHhCCCcHHHHHHHHHHhcCchhHHH---HHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCC
Confidence 46999999999999999885568998 54443322110 1122478999999999999999999999999999
Q ss_pred CceeeHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHCCCccccccCCCCCEeeEEcChhHHHHHHHhh
Q 048591 76 HLEISTRQLYHLWIAEGFIPDNSEATAEKYLEQLINRGFVKANKRRTGGTIHTCSIPCRCRPVLLAVA 143 (286)
Q Consensus 76 ~~~i~~~~li~~w~a~g~i~~~~~~~~~~~l~~L~~~~li~~~~~~~~~~~~~~~mhdlv~~l~~~i~ 143 (286)
|+.|+.+.++.+|.++ .+.++.++++|+++||++... ++....|+||+++|++++...
T Consensus 392 ~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~~Ll~~~~---~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 392 DVKVPTKVLCILWDME-------TEEVEDILQEFVNKSLLFCDR---NGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp TCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSSEEEE---ETTEEEEECCHHHHHHHHHHT
T ss_pred CCccCHHHHHHHhccC-------HHHHHHHHHHHHhCcCeEEec---CCCccEEEEcHHHHHHHHhhh
Confidence 9999999999999753 345788999999999998654 234467999999999998773
No 5
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.42 E-value=2.7e-13 Score=104.31 Aligned_cols=118 Identities=21% Similarity=0.133 Sum_probs=100.9
Q ss_pred CCCEEEEEEecCCCc---ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCcc-Cchhhccccc
Q 048591 161 KKNVKRINVFYKQSD---FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQ-YPSGIENLFL 236 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~---~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-lp~~i~~L~~ 236 (286)
...++.+.+..+... .+..+..+++|+.|.+.++.... . ..+..+++|++|++++|.++. +|..++.+++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~----~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS----I--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC----C--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC----c--hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 456788888887744 45555689999999999998864 2 678899999999999999987 8888888999
Q ss_pred cceeeeccccccccc--hhHhhCCCCccEEecCCCCccccch----HHhhhhccC
Q 048591 237 LRYLKLNIPSLKILP--SSLLSNLLNLYTLDMPFSYIDHTAD----EFTLHARNT 285 (286)
Q Consensus 237 L~~L~L~~~~i~~LP--~~i~~~L~~L~~L~l~~~~l~~lP~----~i~~L~~~~ 285 (286)
|++|++++|.++.+| ..+ +.+++|++|++++|.+..+|. .++.+++|+
T Consensus 90 L~~L~ls~N~i~~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 143 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPL-KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT 143 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGG-GGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred CCEEECCCCcCCChHHHHHH-hhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence 999999999999876 778 999999999999999988876 688888775
No 6
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.42 E-value=5.2e-13 Score=104.84 Aligned_cols=118 Identities=19% Similarity=0.095 Sum_probs=87.9
Q ss_pred CCCEEEEEEecCCCc---ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCcc-Cchhhccccc
Q 048591 161 KKNVKRINVFYKQSD---FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQ-YPSGIENLFL 236 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~---~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-lp~~i~~L~~ 236 (286)
+..++.+.+..+... ++..+..+++|+.|.+.++.... . ..+..+++|++|++++|.+.. +|..++.+++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~----~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS----V--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC----C--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC----h--hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence 456777777777643 44444577888888888887754 2 567778888888888888776 6777777888
Q ss_pred cceeeeccccccccc--hhHhhCCCCccEEecCCCCccccch----HHhhhhccC
Q 048591 237 LRYLKLNIPSLKILP--SSLLSNLLNLYTLDMPFSYIDHTAD----EFTLHARNT 285 (286)
Q Consensus 237 L~~L~L~~~~i~~LP--~~i~~~L~~L~~L~l~~~~l~~lP~----~i~~L~~~~ 285 (286)
|++|++++|.++.+| ..+ +.+++|++|++++|.+..+|. .+..+++|+
T Consensus 97 L~~L~Ls~N~l~~~~~~~~l-~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 150 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEPL-KKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT 150 (168)
T ss_dssp CCEEECBSSSCCSSGGGGGG-SSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCC
T ss_pred CCEEeccCCccCcchhHHHH-hcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCc
Confidence 888888888888876 566 888888888888888877776 666676654
No 7
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.41 E-value=7e-13 Score=109.66 Aligned_cols=121 Identities=21% Similarity=0.161 Sum_probs=96.4
Q ss_pred CCCCEEEEEEecCCCcc--cccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hccccc
Q 048591 160 SKKNVKRINVFYKQSDF--VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFL 236 (286)
Q Consensus 160 ~~~~~r~l~l~~~~~~~--~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~ 236 (286)
.+..++.+.+..+.... +..+..+++|+.|.+.++.... ..+..|..+++|++|+|++|.++.+|.. ++.+.+
T Consensus 38 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~----i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 113 (229)
T 3e6j_A 38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA----LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVH 113 (229)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC----cChhhcccCCCcCEEECCCCcCCccChhHhCcchh
Confidence 45678888888887542 3445578899999999988864 4456678899999999999998888755 578899
Q ss_pred cceeeeccccccccchhHhhCCCCccEEecCCCCccccchH-HhhhhccC
Q 048591 237 LRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADE-FTLHARNT 285 (286)
Q Consensus 237 L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~~~ 285 (286)
|++|++++|+|+.+|..+ +.+++|++|++++|++..+|.. +..+++|+
T Consensus 114 L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 162 (229)
T 3e6j_A 114 LKELFMCCNKLTELPRGI-ERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162 (229)
T ss_dssp CCEEECCSSCCCSCCTTG-GGCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hCeEeccCCcccccCccc-ccCCCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence 999999999999999998 9999999999999988887753 56666553
No 8
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.37 E-value=9.6e-13 Score=114.75 Aligned_cols=119 Identities=17% Similarity=0.090 Sum_probs=73.0
Q ss_pred CCEEEEEEecCCCc-ccccCCCCCCeeEEEEecCCCCCCCCchhhhh---------hcCCCceEEEEeeCCCCccCchhh
Q 048591 162 KNVKRINVFYKQSD-FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGII---------CLMLEFLRVLDLGSLVLIQYPSGI 231 (286)
Q Consensus 162 ~~~r~l~l~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~---------~~~l~~Lr~L~l~~~~l~~lp~~i 231 (286)
..++.+.+..+... ++..+..+++|+.|.+.++.... ..|.. +..+++|++|++++|.++.+|..+
T Consensus 127 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~----~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l 202 (328)
T 4fcg_A 127 AGLETLTLARNPLRALPASIASLNRLRELSIRACPELT----ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASI 202 (328)
T ss_dssp TTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCC----CCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGG
T ss_pred CCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCcc----ccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhh
Confidence 45566666655532 33344456666666666644432 22222 233666777777777766777777
Q ss_pred ccccccceeeeccccccccchhHhhCCCCccEEecCCCCc-cccchHHhhhhccC
Q 048591 232 ENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYI-DHTADEFTLHARNT 285 (286)
Q Consensus 232 ~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l-~~lP~~i~~L~~~~ 285 (286)
+.+++|++|++++|.+..+|..+ +.+++|++|++++|++ ..+|..++++++|+
T Consensus 203 ~~l~~L~~L~L~~N~l~~l~~~l-~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 256 (328)
T 4fcg_A 203 ANLQNLKSLKIRNSPLSALGPAI-HHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256 (328)
T ss_dssp GGCTTCCEEEEESSCCCCCCGGG-GGCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred cCCCCCCEEEccCCCCCcCchhh-ccCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence 77777777777777777777766 7777777777777654 56666666665553
No 9
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.36 E-value=1.6e-12 Score=106.93 Aligned_cols=122 Identities=16% Similarity=0.116 Sum_probs=96.3
Q ss_pred CCCCEEEEEEecCCCccc--ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hccccc
Q 048591 160 SKKNVKRINVFYKQSDFV--HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFL 236 (286)
Q Consensus 160 ~~~~~r~l~l~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~ 236 (286)
.+..++.+.+..+..... ..+..+++|+.|.+.++.... ..+..|..+++|++|+|++|.++.+|.. +..+++
T Consensus 30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~ 105 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE----LAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFS 105 (220)
T ss_dssp CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE----ECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC----cCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCC
Confidence 345788888888875422 245578899999999988865 4567888999999999999999988865 578999
Q ss_pred cceeeeccccccccchhHhhCCCCccEEecCCCCccccchH-HhhhhccC
Q 048591 237 LRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADE-FTLHARNT 285 (286)
Q Consensus 237 L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~~~ 285 (286)
|++|+|++|+|+.+|...|+.+++|++|++++|.+..+|.+ +..+++++
T Consensus 106 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 155 (220)
T 2v9t_B 106 LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155 (220)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCC
Confidence 99999999999888554338999999999999999877764 66666553
No 10
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.36 E-value=1.1e-12 Score=104.00 Aligned_cols=118 Identities=13% Similarity=0.046 Sum_probs=96.2
Q ss_pred CCCEEEEEEecCCCcccccCCCCC-CeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhh-ccccccc
Q 048591 161 KKNVKRINVFYKQSDFVHFVDDDS-HMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGI-ENLFLLR 238 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~~~~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i-~~L~~L~ 238 (286)
...++.+.+..+.....+.+..+. +|+.|.+.++.... + ..+..+++|+.|++++|.++.+|..+ +.+++|+
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~-----~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK-----L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE-----E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCc-----c-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 567888888887754333333444 89999999988763 2 57888999999999999999888665 8899999
Q ss_pred eeeeccccccccch--hHhhCCCCccEEecCCCCccccchH----HhhhhccC
Q 048591 239 YLKLNIPSLKILPS--SLLSNLLNLYTLDMPFSYIDHTADE----FTLHARNT 285 (286)
Q Consensus 239 ~L~L~~~~i~~LP~--~i~~~L~~L~~L~l~~~~l~~lP~~----i~~L~~~~ 285 (286)
+|++++|.+..+|. .+ +.+++|++|++++|.+..+|.. ++.+++++
T Consensus 92 ~L~L~~N~i~~~~~~~~l-~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~ 143 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPL-ASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVR 143 (176)
T ss_dssp EEECCSCCCCCGGGGGGG-GGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCS
T ss_pred EEECCCCcCCcchhhHhh-hcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccc
Confidence 99999999999987 77 8999999999999999888885 78887764
No 11
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.36 E-value=1.9e-12 Score=104.43 Aligned_cols=119 Identities=14% Similarity=0.098 Sum_probs=95.5
Q ss_pred CCCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCc-cCchhhccccccc
Q 048591 160 SKKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-QYPSGIENLFLLR 238 (286)
Q Consensus 160 ~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~~L~ 238 (286)
....++.+.+..+....+..+..+++|++|.+.++.... ..+..+..+++|++|++++|.+. ..|..++.+++|+
T Consensus 64 ~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~ 139 (197)
T 4ezg_A 64 YAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTS----DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139 (197)
T ss_dssp GCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBG----GGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred cCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCc----ccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence 345788888888876655566688899999998887753 34567888899999999999887 4677888999999
Q ss_pred eeeecccc-ccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591 239 YLKLNIPS-LKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT 285 (286)
Q Consensus 239 ~L~L~~~~-i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~ 285 (286)
+|++++|. +..+| .+ +.+++|++|++++|.+..+| .+..+++|+
T Consensus 140 ~L~L~~n~~i~~~~-~l-~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~ 184 (197)
T 4ezg_A 140 SIDLSYNGAITDIM-PL-KTLPELKSLNIQFDGVHDYR-GIEDFPKLN 184 (197)
T ss_dssp EEECCSCTBCCCCG-GG-GGCSSCCEEECTTBCCCCCT-TGGGCSSCC
T ss_pred EEEccCCCCccccH-hh-cCCCCCCEEECCCCCCcChH-HhccCCCCC
Confidence 99999997 88887 57 88999999999999888877 677777664
No 12
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.36 E-value=2.4e-12 Score=104.64 Aligned_cols=122 Identities=19% Similarity=0.200 Sum_probs=85.7
Q ss_pred CCCCEEEEEEecCCCc-ccc-cCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hccccc
Q 048591 160 SKKNVKRINVFYKQSD-FVH-FVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFL 236 (286)
Q Consensus 160 ~~~~~r~l~l~~~~~~-~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~ 236 (286)
....++.+.+..+... .+. .+..+++|++|.+.++.... ..+..+..+++|++|++++|.++.+|.. ++.+++
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 101 (208)
T 2o6s_A 26 IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS----LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ 101 (208)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc----cChhhcCCCCCcCEEECCCCcCCccCHhHhcCccC
Confidence 3456777777777643 222 24467888888888877754 3445567788888888888888777754 577888
Q ss_pred cceeeeccccccccchhHhhCCCCccEEecCCCCccccchH-HhhhhccC
Q 048591 237 LRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADE-FTLHARNT 285 (286)
Q Consensus 237 L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~~~ 285 (286)
|++|++++|.+..+|...++++++|++|++++|.+..+|.. +.++++++
T Consensus 102 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 151 (208)
T 2o6s_A 102 LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151 (208)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCcc
Confidence 88888888888877776447788888888888877776664 45555543
No 13
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.35 E-value=2.2e-12 Score=112.46 Aligned_cols=119 Identities=21% Similarity=0.152 Sum_probs=86.3
Q ss_pred CCCEEEEEEecCCC-cccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCC-CccCchhhccccccc
Q 048591 161 KKNVKRINVFYKQS-DFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLV-LIQYPSGIENLFLLR 238 (286)
Q Consensus 161 ~~~~r~l~l~~~~~-~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l~~lp~~i~~L~~L~ 238 (286)
...++.+.+..+.. .++..+..+++|+.|.+.++.... ++..+..+++|+.|++++|. ...+|..++.+++|+
T Consensus 182 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-----l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 256 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-----LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256 (328)
T ss_dssp STTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-----CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred CCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-----CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence 44566666666653 344445567777777777777653 33457777888888888877 447777788888888
Q ss_pred eeeecccc-ccccchhHhhCCCCccEEecCCCCc-cccchHHhhhhccC
Q 048591 239 YLKLNIPS-LKILPSSLLSNLLNLYTLDMPFSYI-DHTADEFTLHARNT 285 (286)
Q Consensus 239 ~L~L~~~~-i~~LP~~i~~~L~~L~~L~l~~~~l-~~lP~~i~~L~~~~ 285 (286)
+|++++|+ +..+|..+ +++++|++|++++|++ +.+|..+++|++|+
T Consensus 257 ~L~L~~n~~~~~~p~~~-~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 257 RLILKDCSNLLTLPLDI-HRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp EEECTTCTTCCBCCTTG-GGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred EEECCCCCchhhcchhh-hcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence 88888875 56778888 8888888888888865 78888888888765
No 14
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.34 E-value=2.9e-12 Score=107.33 Aligned_cols=121 Identities=23% Similarity=0.244 Sum_probs=84.2
Q ss_pred CCCEEEEEEecCCCcc--cccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hcccccc
Q 048591 161 KKNVKRINVFYKQSDF--VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFLL 237 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~~--~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L 237 (286)
...++.+.+..+.... +..+..+++|+.|.+.++.... ..+..+..+++|+.|++++|.++.+|.. ++.+++|
T Consensus 58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 133 (251)
T 3m19_A 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS----LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL 133 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccc----cChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc
Confidence 4566777776665332 2224467777777777777654 4455677788888888888888877754 5778888
Q ss_pred ceeeeccccccccchhHhhCCCCccEEecCCCCccccch-HHhhhhccC
Q 048591 238 RYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTAD-EFTLHARNT 285 (286)
Q Consensus 238 ~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~-~i~~L~~~~ 285 (286)
++|++++|+++.+|...|+.+++|++|++++|++..+|. .+.++++|+
T Consensus 134 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 182 (251)
T 3m19_A 134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182 (251)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred cEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence 888888888888877432788888888888888876665 455565553
No 15
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.34 E-value=2.1e-12 Score=106.09 Aligned_cols=120 Identities=11% Similarity=-0.002 Sum_probs=85.3
Q ss_pred CCCEEEEEEecCCCccc---ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCch-hhccccc
Q 048591 161 KKNVKRINVFYKQSDFV---HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPS-GIENLFL 236 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~~~---~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~ 236 (286)
+..++.+.+..+..... ..+..+++|+.|.+.++.... ..+..|..+++|+.|++++|.++.+|. .++.+++
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~----i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 106 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD----IEEGAFEGASGVNEILLTSNRLENVQHKMFKGLES 106 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSS
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE----ECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcC
Confidence 34566777777764422 123467888888888887764 344567788888888888888877664 4777888
Q ss_pred cceeeecccccccc-chhHhhCCCCccEEecCCCCcccc-chHHhhhhccC
Q 048591 237 LRYLKLNIPSLKIL-PSSLLSNLLNLYTLDMPFSYIDHT-ADEFTLHARNT 285 (286)
Q Consensus 237 L~~L~L~~~~i~~L-P~~i~~~L~~L~~L~l~~~~l~~l-P~~i~~L~~~~ 285 (286)
|++|+|++|+|..+ |..+ +.+++|++|++++|.+..+ |..+..+++|+
T Consensus 107 L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 156 (220)
T 2v70_A 107 LKTLMLRSNRITCVGNDSF-IGLSSVRLLSLYDNQITTVAPGAFDTLHSLS 156 (220)
T ss_dssp CCEEECTTSCCCCBCTTSS-TTCTTCSEEECTTSCCCCBCTTTTTTCTTCC
T ss_pred CCEEECCCCcCCeECHhHc-CCCccCCEEECCCCcCCEECHHHhcCCCCCC
Confidence 88888888888777 4455 7888888888888888666 56666666553
No 16
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.33 E-value=3.2e-12 Score=109.52 Aligned_cols=122 Identities=19% Similarity=0.030 Sum_probs=96.4
Q ss_pred CCCCEEEEEEecCCCc-ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hcccccc
Q 048591 160 SKKNVKRINVFYKQSD-FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFLL 237 (286)
Q Consensus 160 ~~~~~r~l~l~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L 237 (286)
....++.+.+..+... ++..+..+++|+.|.+.++.... ..+..|..+++|+.|++++|.++.+|.. +..+++|
T Consensus 75 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~----l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS----LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150 (290)
T ss_dssp CCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCC----CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcc----cCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC
Confidence 3456778888777643 44445578889999998888765 4456788889999999999998888754 5788899
Q ss_pred ceeeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591 238 RYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT 285 (286)
Q Consensus 238 ~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~ 285 (286)
++|++++|+++.+|..+|..+++|++|++++|.+..+|.++..+++++
T Consensus 151 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~ 198 (290)
T 1p9a_G 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198 (290)
T ss_dssp CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCS
T ss_pred CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCC
Confidence 999999999999988775788999999999999988998887766553
No 17
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.32 E-value=3.6e-12 Score=108.03 Aligned_cols=121 Identities=19% Similarity=0.192 Sum_probs=76.3
Q ss_pred CCCEEEEEEecCCCc-cc-ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hcccccc
Q 048591 161 KKNVKRINVFYKQSD-FV-HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFLL 237 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~-~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L 237 (286)
...++.+.+..+... .+ ..+..+++|++|.+.++.... ..+..+..+++|+.|++++|.++.+|.. ++.+++|
T Consensus 84 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 159 (272)
T 3rfs_A 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS----LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL 159 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCc----cCHHHhccCCCCCEEECCCCccCccCHHHhccCccC
Confidence 345666666665533 12 123456667777776666654 3344566777777777777777766644 4677777
Q ss_pred ceeeeccccccccchhHhhCCCCccEEecCCCCccccchH-HhhhhccC
Q 048591 238 RYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADE-FTLHARNT 285 (286)
Q Consensus 238 ~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~~~ 285 (286)
++|++++|++..+|...++.+++|++|++++|++..+|.. ++++++|+
T Consensus 160 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (272)
T 3rfs_A 160 TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208 (272)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence 7777777777777665446777777777777777665543 45555543
No 18
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.32 E-value=5.3e-12 Score=104.34 Aligned_cols=99 Identities=23% Similarity=0.208 Sum_probs=89.6
Q ss_pred CCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hccccccceeeeccccccccchhHhhCCCCc
Q 048591 183 DSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLKILPSSLLSNLLNL 261 (286)
Q Consensus 183 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L 261 (286)
.++|+.|.+.++.... ..+..+..+++|+.|+|++|.+..+|.. ++.+++|++|+|++|+|+.+|..+|+.+++|
T Consensus 39 ~~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 114 (229)
T 3e6j_A 39 PTNAQILYLHDNQITK----LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHL 114 (229)
T ss_dssp CTTCSEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCCEEEcCCCccCc----cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhh
Confidence 4899999999999876 4567889999999999999999999854 6899999999999999999998765899999
Q ss_pred cEEecCCCCccccchHHhhhhccC
Q 048591 262 YTLDMPFSYIDHTADEFTLHARNT 285 (286)
Q Consensus 262 ~~L~l~~~~l~~lP~~i~~L~~~~ 285 (286)
++|++++|++..+|..+.++++|+
T Consensus 115 ~~L~Ls~N~l~~lp~~~~~l~~L~ 138 (229)
T 3e6j_A 115 KELFMCCNKLTELPRGIERLTHLT 138 (229)
T ss_dssp CEEECCSSCCCSCCTTGGGCTTCS
T ss_pred CeEeccCCcccccCcccccCCCCC
Confidence 999999999999999999888775
No 19
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.31 E-value=3.5e-12 Score=110.39 Aligned_cols=116 Identities=16% Similarity=0.087 Sum_probs=80.4
Q ss_pred CCEEEEEEecCCC----cccccCCCCCCeeEEEEec-CCCCCCCCchhhhhhcCCCceEEEEeeCCCCc-cCchhhcccc
Q 048591 162 KNVKRINVFYKQS----DFVHFVDDDSHMHSLLYFT-SKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-QYPSGIENLF 235 (286)
Q Consensus 162 ~~~r~l~l~~~~~----~~~~~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~ 235 (286)
..++.+.+..+.. ..+..+..+++|++|.+.+ +.... ..|..+..+++|++|++++|.+. .+|..++.++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG----PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES----CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccc----cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 5677777776663 2445555777777777774 55443 34566777777777777777776 6777777777
Q ss_pred ccceeeecccccc-ccchhHhhCCCCccEEecCCCCcc-ccchHHhhhh
Q 048591 236 LLRYLKLNIPSLK-ILPSSLLSNLLNLYTLDMPFSYID-HTADEFTLHA 282 (286)
Q Consensus 236 ~L~~L~L~~~~i~-~LP~~i~~~L~~L~~L~l~~~~l~-~lP~~i~~L~ 282 (286)
+|++|++++|.+. .+|..+ +++++|++|++++|.+. .+|..+++++
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 173 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFS 173 (313)
T ss_dssp TCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGCCC
T ss_pred CCCEEeCCCCccCCcCChHH-hcCCCCCeEECcCCcccCcCCHHHhhhh
Confidence 7777777777766 667777 77777777777777774 6777776665
No 20
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.31 E-value=4.9e-12 Score=99.24 Aligned_cols=112 Identities=16% Similarity=0.028 Sum_probs=98.0
Q ss_pred CCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc--hhhccccccc
Q 048591 161 KKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP--SGIENLFLLR 238 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp--~~i~~L~~L~ 238 (286)
...++.+.+..+.......+..+++|+.|.+.++.... .++..+..+++|++|++++|.++.+| ..++.+++|+
T Consensus 48 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~ 123 (168)
T 2ell_A 48 FVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFG----GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK 123 (168)
T ss_dssp GGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCS----CCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCC
T ss_pred CCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCch----HHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCC
Confidence 45788999998885544566689999999999999875 35677788999999999999999887 7899999999
Q ss_pred eeeeccccccccch----hHhhCCCCccEEecCCCCccccchH
Q 048591 239 YLKLNIPSLKILPS----SLLSNLLNLYTLDMPFSYIDHTADE 277 (286)
Q Consensus 239 ~L~L~~~~i~~LP~----~i~~~L~~L~~L~l~~~~l~~lP~~ 277 (286)
+|++++|.+..+|. .+ +.+++|++|++++|.+.++|.+
T Consensus 124 ~L~l~~N~l~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 124 SLDLFNCEVTNLNDYRESVF-KLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp EEECCSSGGGTSTTHHHHHH-TTCSSCCEETTEETTSCBCCSS
T ss_pred EEEeeCCcCcchHHHHHHHH-HhCccCcEecCCCCChhhcccc
Confidence 99999999999998 56 9999999999999999888864
No 21
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.31 E-value=5.5e-12 Score=105.59 Aligned_cols=106 Identities=17% Similarity=0.142 Sum_probs=55.6
Q ss_pred CCEEEEEEecCCCc-cc-ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCch-hhccccccc
Q 048591 162 KNVKRINVFYKQSD-FV-HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPS-GIENLFLLR 238 (286)
Q Consensus 162 ~~~r~l~l~~~~~~-~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~L~ 238 (286)
..++.+.+..+... .+ ..+..+++|++|.+.++.... ..+..+..+++|+.|++++|.++.+|. .++.+++|+
T Consensus 83 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 158 (251)
T 3m19_A 83 TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS----LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCC----cChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCC
Confidence 45555555555432 11 122345556666665555543 233344555556666666665555554 355555666
Q ss_pred eeeeccccccccchhHhhCCCCccEEecCCCCc
Q 048591 239 YLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYI 271 (286)
Q Consensus 239 ~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l 271 (286)
+|++++|.+..+|...+..+++|++|++++|.+
T Consensus 159 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred EEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 666666655555543225555666666655554
No 22
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.31 E-value=7.2e-12 Score=99.13 Aligned_cols=111 Identities=19% Similarity=0.126 Sum_probs=91.1
Q ss_pred EEEEecCC-CcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hccccccceeeec
Q 048591 166 RINVFYKQ-SDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFLLRYLKLN 243 (286)
Q Consensus 166 ~l~l~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L~~L~L~ 243 (286)
.+.+..+. ..++..+ .++|+.|.+.++.... ..+..|..+++|+.|+|++|.++.+|.. ++.+++|++|+|+
T Consensus 16 ~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGI--PTDKQRLWLNNNQITK----LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EEEeCCCCCCccCCCc--CCCCcEEEeCCCCccc----cCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 44555444 3344444 4899999999999876 5567899999999999999999999976 5899999999999
Q ss_pred cccccccchhHhhCCCCccEEecCCCCccccchHHhhhh
Q 048591 244 IPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHA 282 (286)
Q Consensus 244 ~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~ 282 (286)
+|+|+.+|...|+.+++|++|++++|.+...|.++..|.
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~ 128 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLR 128 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHH
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcccccccHHHHH
Confidence 999999999743999999999999999887777665544
No 23
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.29 E-value=5.3e-12 Score=108.14 Aligned_cols=121 Identities=17% Similarity=0.133 Sum_probs=96.0
Q ss_pred CCCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc-hhhccccccc
Q 048591 160 SKKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLR 238 (286)
Q Consensus 160 ~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~ 238 (286)
....++.+.+..+..........+++|++|.+.++... .++..+..+++|+.|++++|.++.+| ..++.+++|+
T Consensus 53 ~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~-----~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~ 127 (290)
T 1p9a_G 53 PYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-----SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127 (290)
T ss_dssp TCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCS-----SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCC
T ss_pred cCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCC-----cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCC
Confidence 34567777777776543333347888888888888876 34566788899999999999999887 5688999999
Q ss_pred eeeeccccccccchhHhhCCCCccEEecCCCCccccchHH-hhhhccC
Q 048591 239 YLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEF-TLHARNT 285 (286)
Q Consensus 239 ~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i-~~L~~~~ 285 (286)
+|++++|+++.+|..+|..+++|++|++++|++..+|.++ .++++|+
T Consensus 128 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 175 (290)
T 1p9a_G 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175 (290)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCC
T ss_pred EEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCC
Confidence 9999999999998876688999999999999998888764 5566654
No 24
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.28 E-value=1.3e-11 Score=99.56 Aligned_cols=117 Identities=9% Similarity=0.046 Sum_probs=97.8
Q ss_pred CCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCcc-Cchhhccccccce
Q 048591 161 KKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQ-YPSGIENLFLLRY 239 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-lp~~i~~L~~L~~ 239 (286)
...++.+.+..+.....+.+..+++|++|.+.++.... .+.+..+++|+.|++++|.++. .|..++.+++|++
T Consensus 43 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~------~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATN------YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSC------CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred cCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCc------chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34678888988775533355589999999999996542 3478899999999999999884 6788999999999
Q ss_pred eeeccccccc-cchhHhhCCCCccEEecCCCC-ccccchHHhhhhccC
Q 048591 240 LKLNIPSLKI-LPSSLLSNLLNLYTLDMPFSY-IDHTADEFTLHARNT 285 (286)
Q Consensus 240 L~L~~~~i~~-LP~~i~~~L~~L~~L~l~~~~-l~~lP~~i~~L~~~~ 285 (286)
|++++|.+.. .|..+ +.+++|++|++++|. +..+| .+..+++|+
T Consensus 117 L~Ls~n~i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~ 162 (197)
T 4ezg_A 117 LDISHSAHDDSILTKI-NTLPKVNSIDLSYNGAITDIM-PLKTLPELK 162 (197)
T ss_dssp EECCSSBCBGGGHHHH-TTCSSCCEEECCSCTBCCCCG-GGGGCSSCC
T ss_pred EEecCCccCcHhHHHH-hhCCCCCEEEccCCCCccccH-hhcCCCCCC
Confidence 9999999885 67788 999999999999998 88888 588887765
No 25
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.28 E-value=2e-12 Score=124.28 Aligned_cols=115 Identities=19% Similarity=0.143 Sum_probs=90.4
Q ss_pred CCCCEEEEEEecCCCc-ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccc
Q 048591 160 SKKNVKRINVFYKQSD-FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLR 238 (286)
Q Consensus 160 ~~~~~r~l~l~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~ 238 (286)
....++.|.+..+... ++..+..+++|++|.+.+|.+. .+|..+..+++|++|+|++|.++.+|..++.|++|+
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-----ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296 (727)
T ss_dssp CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-----CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred cCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-----ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence 3456778888777643 4444447888888888888776 345677888889999999988888888888888999
Q ss_pred eeeeccccccccchhHhhCCCCccEEecCCCCcc-ccchHHhh
Q 048591 239 YLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYID-HTADEFTL 280 (286)
Q Consensus 239 ~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~-~lP~~i~~ 280 (286)
+|+|++|.|..+|.++ ++|++|++|+|++|.+. .+|..+..
T Consensus 297 ~L~L~~N~l~~lp~~~-~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 297 YFYFFDNMVTTLPWEF-GNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp EEECCSSCCCCCCSST-TSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred EEECCCCCCCccChhh-hcCCCccEEeCCCCccCCCChHHHhh
Confidence 9999988888888888 88999999999988884 45555544
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.27 E-value=6.1e-12 Score=118.28 Aligned_cols=122 Identities=13% Similarity=0.022 Sum_probs=91.8
Q ss_pred CCCCEEEEEEecCCCc-cc-ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCch-hhccccc
Q 048591 160 SKKNVKRINVFYKQSD-FV-HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPS-GIENLFL 236 (286)
Q Consensus 160 ~~~~~r~l~l~~~~~~-~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~ 236 (286)
.+..++++.+..+... ++ ..+.++++|++|++.++.... ..+..|.++++|++|+|++|.++.+|. .++.+++
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~----i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC----cChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence 4567888888888754 22 345578888888888887764 445668888888888888888887774 4678888
Q ss_pred cceeeeccccccccchhHhhCCCCccEEecCCCCcc--ccchHHhhhhccC
Q 048591 237 LRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYID--HTADEFTLHARNT 285 (286)
Q Consensus 237 L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~--~lP~~i~~L~~~~ 285 (286)
|++|++++|+++.+|...|++|++|++|++++|.+. .+|..++++++|+
T Consensus 126 L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 176 (635)
T 4g8a_A 126 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 176 (635)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred CCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhh
Confidence 888888888888887753388888888888888774 4567777776654
No 27
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.26 E-value=5.9e-12 Score=117.56 Aligned_cols=111 Identities=16% Similarity=0.070 Sum_probs=95.5
Q ss_pred CEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeee
Q 048591 163 NVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKL 242 (286)
Q Consensus 163 ~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L 242 (286)
.++.+.+..+.....+.++.+++|+.|.+.+|... .+|..+..+++|+.|+|++|.++.+| .++.+++|++|+|
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-----ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC-----CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCccccc-----ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEEC
Confidence 46778888877443333668999999999999887 35678999999999999999999998 8999999999999
Q ss_pred cccccccc--chhHhhCCCCccEEecCCCCccccchHHhh
Q 048591 243 NIPSLKIL--PSSLLSNLLNLYTLDMPFSYIDHTADEFTL 280 (286)
Q Consensus 243 ~~~~i~~L--P~~i~~~L~~L~~L~l~~~~l~~lP~~i~~ 280 (286)
++|.|+.+ |..+ +.+++|++|++++|.+..+|+.+..
T Consensus 516 s~N~l~~~~~p~~l-~~l~~L~~L~L~~N~l~~~~~~~~~ 554 (567)
T 1dce_A 516 CNNRLQQSAAIQPL-VSCPRLVLLNLQGNSLCQEEGIQER 554 (567)
T ss_dssp CSSCCCSSSTTGGG-GGCTTCCEEECTTSGGGGSSSCTTH
T ss_pred CCCCCCCCCCcHHH-hcCCCCCEEEecCCcCCCCccHHHH
Confidence 99999988 8899 9999999999999999887765433
No 28
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.26 E-value=1.7e-11 Score=103.76 Aligned_cols=121 Identities=17% Similarity=0.148 Sum_probs=81.4
Q ss_pred CCCEEEEEEecCCCc-ccc-cCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCch-hhcccccc
Q 048591 161 KKNVKRINVFYKQSD-FVH-FVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPS-GIENLFLL 237 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~-~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~L 237 (286)
...++.+.+..+... ++. .+..+++|++|.+.++.... ..+..+..+++|+.|++++|.++.+|. .++.+++|
T Consensus 60 l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 135 (270)
T 2o6q_A 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA----LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCC----CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCc----CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC
Confidence 355666666665532 222 22356777777777766654 334556777778888888887776663 45778888
Q ss_pred ceeeeccccccccchhHhhCCCCccEEecCCCCccccchH-HhhhhccC
Q 048591 238 RYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADE-FTLHARNT 285 (286)
Q Consensus 238 ~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~~~ 285 (286)
++|++++|.+..+|...|+.+++|++|++++|.+..+|.. +.++++|+
T Consensus 136 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 184 (270)
T 2o6q_A 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELK 184 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcC
Confidence 8888888888877776447788888888888888777654 55555543
No 29
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.26 E-value=1.5e-11 Score=98.92 Aligned_cols=107 Identities=16% Similarity=0.116 Sum_probs=66.6
Q ss_pred CCCEEEEEEecCCCc-ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCch-hhccccccc
Q 048591 161 KKNVKRINVFYKQSD-FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPS-GIENLFLLR 238 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~L~ 238 (286)
+..++.+.+..+... ++..+..+++|+.|.+.++.... ..+..|..+++|+.|+|++|.++.+|. .++.+++|+
T Consensus 30 ~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~----i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~ 105 (193)
T 2wfh_A 30 PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIST----LSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105 (193)
T ss_dssp CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCE----eCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCC
Confidence 345666666666533 33344466667777776666654 334556666777777777777665553 466666777
Q ss_pred eeeeccccccccchhHhhCCCCccEEecCCCCc
Q 048591 239 YLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYI 271 (286)
Q Consensus 239 ~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l 271 (286)
+|+|++|.|+.+|...|..+++|++|++++|.+
T Consensus 106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred EEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 777777777666665336667777777766654
No 30
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.26 E-value=3.1e-12 Score=122.92 Aligned_cols=101 Identities=24% Similarity=0.181 Sum_probs=90.9
Q ss_pred cCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCC
Q 048591 179 FVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNL 258 (286)
Q Consensus 179 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L 258 (286)
.+..+++|+.|.+.++.... ++..+..+++|+.|+|++|.++.+|..++.|++|++|+|++|.|+.+|.++ ++|
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~-----l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~-~~l 292 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFN-----ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL-GSC 292 (727)
T ss_dssp ---CCCCCCEEECTTSCCSC-----CCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSG-GGG
T ss_pred hhccCCCCcEEECCCCCCCC-----CChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhh-cCC
Confidence 44578999999999998864 445566899999999999999999999999999999999999999999999 999
Q ss_pred CCccEEecCCCCccccchHHhhhhccC
Q 048591 259 LNLYTLDMPFSYIDHTADEFTLHARNT 285 (286)
Q Consensus 259 ~~L~~L~l~~~~l~~lP~~i~~L~~~~ 285 (286)
.+|++|+|++|.+..+|.++++|++|+
T Consensus 293 ~~L~~L~L~~N~l~~lp~~~~~l~~L~ 319 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTLPWEFGNLCNLQ 319 (727)
T ss_dssp TTCSEEECCSSCCCCCCSSTTSCTTCC
T ss_pred CCCCEEECCCCCCCccChhhhcCCCcc
Confidence 999999999999999999999998876
No 31
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.25 E-value=1.7e-11 Score=97.03 Aligned_cols=116 Identities=18% Similarity=0.200 Sum_probs=90.6
Q ss_pred CCCCEEEEEEecCCCc-ccc-cCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hccccc
Q 048591 160 SKKNVKRINVFYKQSD-FVH-FVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFL 236 (286)
Q Consensus 160 ~~~~~r~l~l~~~~~~-~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~ 236 (286)
....++.+.+..+... .+. .+..+++|++|.+.++.... ..+..+..+++|+.|++++|.++.+|.. ++.+++
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 101 (177)
T 2o6r_A 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS----LPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQ 101 (177)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE----eChhHccCCCccCEEECCCCCccccCHHHhhCCcc
Confidence 3467888888887744 222 34578899999999888765 4455678899999999999999888765 678999
Q ss_pred cceeeeccccccccchhHhhCCCCccEEecCCCCccccchHHh
Q 048591 237 LRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFT 279 (286)
Q Consensus 237 L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~ 279 (286)
|++|++++|.++.+|..++..+++|++|++++|.+...++.+.
T Consensus 102 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~ 144 (177)
T 2o6r_A 102 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 144 (177)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHHH
T ss_pred cCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccHH
Confidence 9999999999999988765789999999999998754444343
No 32
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.25 E-value=9.7e-12 Score=116.83 Aligned_cols=119 Identities=16% Similarity=0.126 Sum_probs=61.8
Q ss_pred CCCEEEEEEecCCCc-cc-ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhcccccc
Q 048591 161 KKNVKRINVFYKQSD-FV-HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLFLL 237 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~-~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~L 237 (286)
+..++.+.+..+... .+ ..+.++++|++|.+.++.... ..+..|.++++|++|++++|.++.+ |..++.+++|
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 106 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET----IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc----cCHHHhhchhhcCEeECCCCcccccChhhcCCcccC
Confidence 345555665555532 11 133355566666665555443 2334455555555555555555544 4455555555
Q ss_pred ceeeeccccccccc-hhHhhCCCCccEEecCCCCcc--ccchHHhhhhcc
Q 048591 238 RYLKLNIPSLKILP-SSLLSNLLNLYTLDMPFSYID--HTADEFTLHARN 284 (286)
Q Consensus 238 ~~L~L~~~~i~~LP-~~i~~~L~~L~~L~l~~~~l~--~lP~~i~~L~~~ 284 (286)
++|++++|.+..+| ..+ +++++|++|++++|.+. .+|..++++++|
T Consensus 107 ~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L 155 (606)
T 3vq2_A 107 ENLVAVETKLASLESFPI-GQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 155 (606)
T ss_dssp CEEECTTSCCCCSSSSCC-TTCTTCCEEECCSSCCCCCCCCGGGGTCTTC
T ss_pred CEEEccCCcccccccccc-CCCCCCCEEeCCCCcccceechHhHhhcCCC
Confidence 55555555555554 334 55555555555555553 345555555544
No 33
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.25 E-value=1.7e-11 Score=103.85 Aligned_cols=86 Identities=21% Similarity=0.149 Sum_probs=39.6
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hccccccceeeeccccccccchhHhhCCCC
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLKILPSSLLSNLLN 260 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~ 260 (286)
.+++|++|.+.++.... ..+..+..+++|+.|++++|.++.+|.. ++.+++|++|++++|++..+|...++.+++
T Consensus 131 ~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 206 (272)
T 3rfs_A 131 KLTNLTYLNLAHNQLQS----LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 206 (272)
T ss_dssp TCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred cCCCCCEEECCCCccCc----cCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcC
Confidence 44455555554444432 2223344445555555555554444432 344455555555555544444432244555
Q ss_pred ccEEecCCCCc
Q 048591 261 LYTLDMPFSYI 271 (286)
Q Consensus 261 L~~L~l~~~~l 271 (286)
|++|++++|.+
T Consensus 207 L~~L~l~~N~~ 217 (272)
T 3rfs_A 207 LQYIWLHDNPW 217 (272)
T ss_dssp CCEEECCSSCB
T ss_pred CCEEEccCCCc
Confidence 55555555443
No 34
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.25 E-value=2e-11 Score=103.23 Aligned_cols=120 Identities=21% Similarity=0.195 Sum_probs=83.1
Q ss_pred CCCEEEEEEecCCCc-cc-ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hcccccc
Q 048591 161 KKNVKRINVFYKQSD-FV-HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFLL 237 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~-~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L 237 (286)
...++.+.+..+... .+ ..+..+++|+.|.+.++.... ..+..+..+++|+.|++++|.++.+|.. ++.+++|
T Consensus 84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 159 (270)
T 2o6q_A 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS----LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCe----eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc
Confidence 456777777766643 22 233467788888888777765 3445567778888888888887777754 6777888
Q ss_pred ceeeeccccccccchhHhhCCCCccEEecCCCCccccchH-Hhhhhcc
Q 048591 238 RYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADE-FTLHARN 284 (286)
Q Consensus 238 ~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~~ 284 (286)
++|++++|.+..+|...|.++++|++|++++|.+..+|.. +..+++|
T Consensus 160 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (270)
T 2o6q_A 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207 (270)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence 8888888887777765337778888888888877777654 4555554
No 35
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.25 E-value=2.7e-11 Score=95.77 Aligned_cols=100 Identities=20% Similarity=0.155 Sum_probs=86.2
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hccccccceeeeccccccccchhHhhCCCC
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLKILPSSLLSNLLN 260 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~ 260 (286)
-.++|+.|.+.++.... ..+..+..+++|++|++++|.++.+|.. ++.+++|++|++++|.++.+|...++.+++
T Consensus 26 ~~~~l~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 101 (177)
T 2o6r_A 26 IPSSATRLELESNKLQS----LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQ 101 (177)
T ss_dssp CCTTCSEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCCcEEEeCCCcccE----eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcc
Confidence 35799999999998865 4556788999999999999999988865 689999999999999999999875589999
Q ss_pred ccEEecCCCCccccchHH-hhhhccC
Q 048591 261 LYTLDMPFSYIDHTADEF-TLHARNT 285 (286)
Q Consensus 261 L~~L~l~~~~l~~lP~~i-~~L~~~~ 285 (286)
|++|++++|.+..+|..+ .++++++
T Consensus 102 L~~L~l~~N~l~~~~~~~~~~l~~L~ 127 (177)
T 2o6r_A 102 LKELALDTNQLKSVPDGIFDRLTSLQ 127 (177)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred cCEEECcCCcceEeCHHHhcCCcccC
Confidence 999999999998898864 5666654
No 36
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.23 E-value=2.6e-11 Score=95.50 Aligned_cols=105 Identities=21% Similarity=0.173 Sum_probs=85.9
Q ss_pred EEEEecCCC-cccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hccccccceeeec
Q 048591 166 RINVFYKQS-DFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFLLRYLKLN 243 (286)
Q Consensus 166 ~l~l~~~~~-~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L~~L~L~ 243 (286)
.+.+..+.. .++..+ .++++.|.+.++.... ..+..|..+++|+.|+|++|.++.+|.. +..+++|++|+|+
T Consensus 13 ~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 13 TVDCSGKSLASVPTGI--PTTTQVLYLYDNQITK----LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp EEECTTSCCSSCCSCC--CTTCSEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EEEeCCCCcCccCccC--CCCCcEEEcCCCcCCc----cChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 455555543 344433 4889999999999876 4567899999999999999999999876 5899999999999
Q ss_pred cccccccchhHhhCCCCccEEecCCCCccccch
Q 048591 244 IPSLKILPSSLLSNLLNLYTLDMPFSYIDHTAD 276 (286)
Q Consensus 244 ~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~ 276 (286)
+|+|+.+|...|+++++|++|++++|.+.-.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999999998744999999999999998754444
No 37
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.23 E-value=1.3e-11 Score=101.34 Aligned_cols=99 Identities=19% Similarity=0.125 Sum_probs=86.4
Q ss_pred CCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhccccccceeeeccccccccchhHhhCCCCc
Q 048591 183 DSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNL 261 (286)
Q Consensus 183 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L 261 (286)
.++++.|.+.++.... ..+..|..+++|+.|+|++|.++.+ |..+..+++|++|+|++|+|+.+|..+|..+++|
T Consensus 31 ~~~l~~L~l~~n~i~~----i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L 106 (220)
T 2v9t_B 31 PETITEIRLEQNTIKV----IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL 106 (220)
T ss_dssp CTTCCEEECCSSCCCE----ECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CcCCCEEECCCCcCCC----cCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCC
Confidence 3689999999998875 4456789999999999999999866 7889999999999999999999999876899999
Q ss_pred cEEecCCCCcccc-chHHhhhhccC
Q 048591 262 YTLDMPFSYIDHT-ADEFTLHARNT 285 (286)
Q Consensus 262 ~~L~l~~~~l~~l-P~~i~~L~~~~ 285 (286)
++|++++|.+..+ |..+..+++|+
T Consensus 107 ~~L~L~~N~l~~~~~~~~~~l~~L~ 131 (220)
T 2v9t_B 107 QLLLLNANKINCLRVDAFQDLHNLN 131 (220)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CEEECCCCCCCEeCHHHcCCCCCCC
Confidence 9999999999776 45677777664
No 38
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.21 E-value=1.6e-11 Score=115.33 Aligned_cols=98 Identities=16% Similarity=0.030 Sum_probs=87.1
Q ss_pred CCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCch-hhccccccceeeeccccccccchhHhhCCCCcc
Q 048591 184 SHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLKILPSSLLSNLLNLY 262 (286)
Q Consensus 184 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~ 262 (286)
++++.|++.+|.+.. ..+..|.++++|++|+|++|.++.+|+ .++++++|++|+|++|+|+.+|...|++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~----l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRH----LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 127 (635)
T ss_dssp TTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCC
T ss_pred cCCCEEEeeCCCCCC----CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCC
Confidence 589999999999875 456789999999999999999998875 589999999999999999999987659999999
Q ss_pred EEecCCCCccccchH-HhhhhccC
Q 048591 263 TLDMPFSYIDHTADE-FTLHARNT 285 (286)
Q Consensus 263 ~L~l~~~~l~~lP~~-i~~L~~~~ 285 (286)
+|++++|++..+|.. +++|++|+
T Consensus 128 ~L~Ls~N~l~~l~~~~~~~L~~L~ 151 (635)
T 4g8a_A 128 KLVAVETNLASLENFPIGHLKTLK 151 (635)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCC
T ss_pred EEECCCCcCCCCChhhhhcCcccC
Confidence 999999999888864 77777765
No 39
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.21 E-value=3.3e-11 Score=96.96 Aligned_cols=98 Identities=15% Similarity=0.109 Sum_probs=85.3
Q ss_pred CCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc-hhhccccccceeeeccccccccchhHhhCCCCc
Q 048591 183 DSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKILPSSLLSNLLNL 261 (286)
Q Consensus 183 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L 261 (286)
.++++.|.+.++... .++..+..+++|+.|+|++|.++.++ ..+..+++|++|+|++|+|+.+|...|+.+++|
T Consensus 30 ~~~l~~L~L~~n~i~-----~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L 104 (193)
T 2wfh_A 30 PRDVTELYLDGNQFT-----LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104 (193)
T ss_dssp CTTCCEEECCSSCCC-----SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred CCCCCEEECCCCcCc-----hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCC
Confidence 468999999999886 34578999999999999999999887 468999999999999999999987544999999
Q ss_pred cEEecCCCCccccchH-HhhhhccC
Q 048591 262 YTLDMPFSYIDHTADE-FTLHARNT 285 (286)
Q Consensus 262 ~~L~l~~~~l~~lP~~-i~~L~~~~ 285 (286)
++|++++|.+..+|.+ +..+++++
T Consensus 105 ~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (193)
T 2wfh_A 105 RLLSLHGNDISVVPEGAFNDLSALS 129 (193)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred CEEECCCCCCCeeChhhhhcCcccc
Confidence 9999999999988875 66666654
No 40
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.21 E-value=3.2e-11 Score=102.69 Aligned_cols=120 Identities=13% Similarity=0.023 Sum_probs=77.2
Q ss_pred CCCEEEEEEecCCCc-c-cccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCch-hhcccccc
Q 048591 161 KKNVKRINVFYKQSD-F-VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPS-GIENLFLL 237 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~-~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~L 237 (286)
...++.+.+..+... . +..+..+++|+.|.+.++.... ..+..+..+++|+.|++++|.++.+|. .+..+++|
T Consensus 104 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 179 (285)
T 1ozn_A 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA----LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179 (285)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc----cCHhHhccCCCccEEECCCCcccccCHHHhcCcccc
Confidence 345666666665532 1 2234456677777777666654 333456677777777777777776664 36677777
Q ss_pred ceeeecccccccc-chhHhhCCCCccEEecCCCCccccchH-HhhhhccC
Q 048591 238 RYLKLNIPSLKIL-PSSLLSNLLNLYTLDMPFSYIDHTADE-FTLHARNT 285 (286)
Q Consensus 238 ~~L~L~~~~i~~L-P~~i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~~~ 285 (286)
++|++++|.+..+ |..+ +.+++|++|++++|.+..+|.. +..+++|+
T Consensus 180 ~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 228 (285)
T 1ozn_A 180 DRLLLHQNRVAHVHPHAF-RDLGRLMTLYLFANNLSALPTEALAPLRALQ 228 (285)
T ss_dssp CEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred CEEECCCCcccccCHhHc-cCcccccEeeCCCCcCCcCCHHHcccCcccC
Confidence 7777777777665 5555 7777777777777777666643 66665553
No 41
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.20 E-value=2.1e-11 Score=113.79 Aligned_cols=93 Identities=17% Similarity=0.116 Sum_probs=85.3
Q ss_pred CeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCccEE
Q 048591 185 HMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTL 264 (286)
Q Consensus 185 ~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L 264 (286)
.|+.|.+.++.... +|. +..+++|+.|+|++|.++.+|..++.+++|++|+|++|.|+.+| ++ +++++|++|
T Consensus 442 ~L~~L~Ls~n~l~~-----lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l-~~l~~L~~L 513 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-----LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GV-ANLPRLQEL 513 (567)
T ss_dssp TCSEEECTTSCCSS-----CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GG-TTCSSCCEE
T ss_pred CceEEEecCCCCCC-----CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-cc-CCCCCCcEE
Confidence 58899999998864 344 89999999999999999999999999999999999999999999 88 999999999
Q ss_pred ecCCCCcccc--chHHhhhhccC
Q 048591 265 DMPFSYIDHT--ADEFTLHARNT 285 (286)
Q Consensus 265 ~l~~~~l~~l--P~~i~~L~~~~ 285 (286)
++++|++..+ |..+++|++|+
T Consensus 514 ~Ls~N~l~~~~~p~~l~~l~~L~ 536 (567)
T 1dce_A 514 LLCNNRLQQSAAIQPLVSCPRLV 536 (567)
T ss_dssp ECCSSCCCSSSTTGGGGGCTTCC
T ss_pred ECCCCCCCCCCCcHHHhcCCCCC
Confidence 9999999887 89999998875
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.20 E-value=2.3e-11 Score=105.23 Aligned_cols=118 Identities=11% Similarity=0.091 Sum_probs=84.4
Q ss_pred CCCCEEEEEEec-CC--CcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCc-cCchhhcccc
Q 048591 160 SKKNVKRINVFY-KQ--SDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-QYPSGIENLF 235 (286)
Q Consensus 160 ~~~~~r~l~l~~-~~--~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~ 235 (286)
....++.+.+.. +. ...+..+..+++|++|.+.++.... ..+..+..+++|++|++++|.+. .+|..++.++
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 149 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG----AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE----ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC----cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC
Confidence 345677777773 44 2345555677888888888777753 45566777888888888888876 6777788888
Q ss_pred ccceeeecccccc-ccchhHhhCCC-CccEEecCCCCc-cccchHHhhhh
Q 048591 236 LLRYLKLNIPSLK-ILPSSLLSNLL-NLYTLDMPFSYI-DHTADEFTLHA 282 (286)
Q Consensus 236 ~L~~L~L~~~~i~-~LP~~i~~~L~-~L~~L~l~~~~l-~~lP~~i~~L~ 282 (286)
+|++|++++|.+. .+|..+ +++. +|++|++++|.+ ..+|..++.++
T Consensus 150 ~L~~L~L~~N~l~~~~p~~l-~~l~~~L~~L~L~~N~l~~~~~~~~~~l~ 198 (313)
T 1ogq_A 150 NLVGITFDGNRISGAIPDSY-GSFSKLFTSMTISRNRLTGKIPPTFANLN 198 (313)
T ss_dssp TCCEEECCSSCCEEECCGGG-GCCCTTCCEEECCSSEEEEECCGGGGGCC
T ss_pred CCCeEECcCCcccCcCCHHH-hhhhhcCcEEECcCCeeeccCChHHhCCc
Confidence 8888888888776 777777 7776 778888877777 36666666543
No 43
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.20 E-value=3.2e-11 Score=106.41 Aligned_cols=110 Identities=16% Similarity=0.164 Sum_probs=58.7
Q ss_pred CCEEEEEEecCCCccc--ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhccccccc
Q 048591 162 KNVKRINVFYKQSDFV--HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLFLLR 238 (286)
Q Consensus 162 ~~~r~l~l~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~L~ 238 (286)
..++.|.+..+..... ..+..+++|+.|.+.+|.... ..+..|..+++|+.|+|++|.+..+ |..+..+.+|+
T Consensus 64 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 139 (361)
T 2xot_A 64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT----LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ 139 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc----CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCC
Confidence 3455555555443211 123355555555555555543 2333455566666666666665544 34555666666
Q ss_pred eeeeccccccccchhHh---hCCCCccEEecCCCCccccc
Q 048591 239 YLKLNIPSLKILPSSLL---SNLLNLYTLDMPFSYIDHTA 275 (286)
Q Consensus 239 ~L~L~~~~i~~LP~~i~---~~L~~L~~L~l~~~~l~~lP 275 (286)
+|+|++|.|..+|..+| +.+++|++|+|++|++..+|
T Consensus 140 ~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 140 KLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp EEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred EEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 66666666666666553 34566666666666665555
No 44
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.19 E-value=2e-11 Score=96.55 Aligned_cols=98 Identities=15% Similarity=0.056 Sum_probs=84.0
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCc
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNL 261 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L 261 (286)
++++|+.|.+.++.... ++......++|++|++++|.++.+ ..++.+++|++|++++|.++.+|..+++.+++|
T Consensus 17 ~~~~L~~L~l~~n~l~~-----i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV-----IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp CTTSCEEEECTTSCCCS-----CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred CcCCceEEEeeCCCCch-----hHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 78899999999998864 233333444999999999999987 678999999999999999999997766899999
Q ss_pred cEEecCCCCccccch--HHhhhhccC
Q 048591 262 YTLDMPFSYIDHTAD--EFTLHARNT 285 (286)
Q Consensus 262 ~~L~l~~~~l~~lP~--~i~~L~~~~ 285 (286)
++|++++|.+..+|. .++.+++|+
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~ 116 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLT 116 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCC
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCC
Confidence 999999999999997 788877764
No 45
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.19 E-value=4e-11 Score=102.10 Aligned_cols=122 Identities=18% Similarity=0.093 Sum_probs=87.5
Q ss_pred CCCCEEEEEEecCCCc-c-cccCCCCCCeeEEEEecCC-CCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhcccc
Q 048591 160 SKKNVKRINVFYKQSD-F-VHFVDDDSHMHSLLYFTSK-SDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLF 235 (286)
Q Consensus 160 ~~~~~r~l~l~~~~~~-~-~~~~~~~~~Lr~L~l~~~~-~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~ 235 (286)
....++.+.+..+... . +..+..+++|++|.+.++. ... ..+..+..+++|+.|++++|.+..+ |..++.++
T Consensus 54 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 129 (285)
T 1ozn_A 54 ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS----VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCC----CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred cCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccc----cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc
Confidence 3456777777766533 2 3345567788888887775 443 3356677888888888888887766 45677888
Q ss_pred ccceeeeccccccccchhHhhCCCCccEEecCCCCccccchH-HhhhhccC
Q 048591 236 LLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADE-FTLHARNT 285 (286)
Q Consensus 236 ~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~~~ 285 (286)
+|++|++++|.+..+|...++.+++|++|++++|++..+|.. +..+++|+
T Consensus 130 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 180 (285)
T 1ozn_A 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180 (285)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccC
Confidence 888888888888888776338888888888888888777764 66666553
No 46
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.19 E-value=3.2e-11 Score=102.19 Aligned_cols=119 Identities=18% Similarity=0.082 Sum_probs=76.5
Q ss_pred CCCEEEEEEecCCCcc-c-ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCch-hhcccccc
Q 048591 161 KKNVKRINVFYKQSDF-V-HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPS-GIENLFLL 237 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~~-~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~L 237 (286)
...++.+.+..+.... + ..+..+++|++|.+.++.... ..+..+..+++|+.|++++|.+..++. .++.+++|
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 126 (276)
T 2z62_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS----LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (276)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc----cChhhhcCCccccEEECCCCCccccCchhcccCCCC
Confidence 3456666666555331 1 134456667777766666543 334556777777777777777766654 57777777
Q ss_pred ceeeeccccccc--cchhHhhCCCCccEEecCCCCccccc-hHHhhhhcc
Q 048591 238 RYLKLNIPSLKI--LPSSLLSNLLNLYTLDMPFSYIDHTA-DEFTLHARN 284 (286)
Q Consensus 238 ~~L~L~~~~i~~--LP~~i~~~L~~L~~L~l~~~~l~~lP-~~i~~L~~~ 284 (286)
++|++++|.+.. +|..+ +++++|++|++++|++..+| ..+..++++
T Consensus 127 ~~L~l~~n~l~~~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 175 (276)
T 2z62_A 127 KELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (276)
T ss_dssp CEEECCSSCCCCCCCCGGG-GGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred CEEECcCCccceecCchhh-ccCCCCCEEECCCCCCCcCCHHHhhhhhhc
Confidence 777777777765 56777 77788888888877776554 345555544
No 47
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.19 E-value=2.4e-11 Score=97.54 Aligned_cols=106 Identities=13% Similarity=0.080 Sum_probs=78.2
Q ss_pred CCCEEEEEEecCCCc-ccc--cCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCch-hhccccc
Q 048591 161 KKNVKRINVFYKQSD-FVH--FVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPS-GIENLFL 236 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~-~~~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~ 236 (286)
...++.+.+..+... .+. .+..+++|++|.+.++.... ..+..|..+++|+.|+|++|.++.+|. .++.+++
T Consensus 28 ~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 103 (192)
T 1w8a_A 28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG----IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQ 103 (192)
T ss_dssp CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC----BCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTT
T ss_pred CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCC----cCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCC
Confidence 347778888777644 222 14477888888888887765 446677888888888888888876654 4778888
Q ss_pred cceeeecccccccc-chhHhhCCCCccEEecCCCCc
Q 048591 237 LRYLKLNIPSLKIL-PSSLLSNLLNLYTLDMPFSYI 271 (286)
Q Consensus 237 L~~L~L~~~~i~~L-P~~i~~~L~~L~~L~l~~~~l 271 (286)
|++|+|++|+++.+ |..+ +.+++|++|++++|.+
T Consensus 104 L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 104 LKTLNLYDNQISCVMPGSF-EHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCEEECCSSCCCEECTTSS-TTCTTCCEEECTTCCB
T ss_pred CCEEECCCCcCCeeCHHHh-hcCCCCCEEEeCCCCc
Confidence 88888888888766 5555 8888888888888876
No 48
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.19 E-value=5.5e-11 Score=96.47 Aligned_cols=99 Identities=23% Similarity=0.233 Sum_probs=85.6
Q ss_pred CCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hccccccceeeeccccccccchhHhhCCCCc
Q 048591 183 DSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLKILPSSLLSNLLNL 261 (286)
Q Consensus 183 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L 261 (286)
.++++.|.+.++.... ..+..+..+++|+.|++++|.++.+|.. +..+++|++|++++|.+..+|...|+++++|
T Consensus 27 ~~~l~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 102 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKS----LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL 102 (208)
T ss_dssp CTTCSEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCcEEEcCCCccCc----CChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCC
Confidence 5689999999998875 4556788999999999999999988865 5889999999999999999988755899999
Q ss_pred cEEecCCCCccccchH-HhhhhccC
Q 048591 262 YTLDMPFSYIDHTADE-FTLHARNT 285 (286)
Q Consensus 262 ~~L~l~~~~l~~lP~~-i~~L~~~~ 285 (286)
++|++++|.+..+|.. +.++++|+
T Consensus 103 ~~L~L~~N~l~~~~~~~~~~l~~L~ 127 (208)
T 2o6s_A 103 KELALNTNQLQSLPDGVFDKLTQLK 127 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CEEEcCCCcCcccCHhHhccCCcCC
Confidence 9999999999888775 56676654
No 49
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.18 E-value=1.5e-11 Score=94.51 Aligned_cols=99 Identities=17% Similarity=0.094 Sum_probs=85.1
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccc-cchhHhhCCCC
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKI-LPSSLLSNLLN 260 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~-LP~~i~~~L~~ 260 (286)
..++++.|.+.++..... .++..+..+++|+.|++++|.++.+ ..++.+++|++|++++|.+.. +|..+ +.+++
T Consensus 15 ~~~~l~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~ 89 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEG---KLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLA-EKCPN 89 (149)
T ss_dssp CGGGCSEEECTTCBCBTT---BCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHH-HHCTT
T ss_pred CCccCeEEEccCCcCChh---HHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHh-hhCCC
Confidence 457899999999987511 3556778999999999999999988 789999999999999999998 77777 88999
Q ss_pred ccEEecCCCCccccc--hHHhhhhccC
Q 048591 261 LYTLDMPFSYIDHTA--DEFTLHARNT 285 (286)
Q Consensus 261 L~~L~l~~~~l~~lP--~~i~~L~~~~ 285 (286)
|++|++++|.+..+| ..++++++|+
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~l~~L~ 116 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKKLENLK 116 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGGCTTCC
T ss_pred CCEEECCCCcCCChHHHHHHhhCCCCC
Confidence 999999999998765 7788887764
No 50
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.18 E-value=3.3e-11 Score=112.21 Aligned_cols=118 Identities=18% Similarity=0.106 Sum_probs=61.4
Q ss_pred CCEEEEEEecCCCc-c-cccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCch-hhccccccc
Q 048591 162 KNVKRINVFYKQSD-F-VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPS-GIENLFLLR 238 (286)
Q Consensus 162 ~~~r~l~l~~~~~~-~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~L~ 238 (286)
..++.+.+..+... . +..+.++++|++|.+.++.... ..+..|..+++|++|++++|.++.+|. .++.+++|+
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 127 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS----LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCC
T ss_pred CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc----cCHhhhcCccccccccccccccccCCCcccccccccc
Confidence 34445555444322 1 1123345555555555554432 233455555666666666665555543 455666666
Q ss_pred eeeeccccccc--cchhHhhCCCCccEEecCCCCcccc-chHHhhhhcc
Q 048591 239 YLKLNIPSLKI--LPSSLLSNLLNLYTLDMPFSYIDHT-ADEFTLHARN 284 (286)
Q Consensus 239 ~L~L~~~~i~~--LP~~i~~~L~~L~~L~l~~~~l~~l-P~~i~~L~~~ 284 (286)
+|++++|.+.. +|..+ +++++|++|++++|.+..+ |..++.++++
T Consensus 128 ~L~L~~n~l~~~~lp~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 128 ELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp EEECCSSCCCCCCCCGGG-GGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred EEecCCCccceecChhhh-cccCCCCEEeCcCCccceecHHHccchhcc
Confidence 66666666553 45666 6666666666666665443 3345555444
No 51
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.17 E-value=1.3e-10 Score=99.45 Aligned_cols=115 Identities=17% Similarity=0.061 Sum_probs=79.7
Q ss_pred CCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhcccccccee
Q 048591 161 KKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYL 240 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L 240 (286)
...++.+.+..+.......+..+++|+.|.+.++.... + +.+..+++|+.|++++|.++.+ ..++.+++|++|
T Consensus 89 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~-----~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L 161 (291)
T 1h6t_A 89 LKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD-----I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTL 161 (291)
T ss_dssp CTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCC-----C-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEE
T ss_pred CCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCC-----C-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEE
Confidence 45566666666664444445567777777777776643 1 3466777777777777777766 467777788888
Q ss_pred eeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591 241 KLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT 285 (286)
Q Consensus 241 ~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~ 285 (286)
++++|.+..+|. + +.+++|++|++++|.+..+|. +..+++|+
T Consensus 162 ~L~~N~l~~~~~-l-~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~ 203 (291)
T 1h6t_A 162 SLEDNQISDIVP-L-AGLTKLQNLYLSKNHISDLRA-LAGLKNLD 203 (291)
T ss_dssp ECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCBCGG-GTTCTTCS
T ss_pred EccCCccccchh-h-cCCCccCEEECCCCcCCCChh-hccCCCCC
Confidence 888887777766 6 778888888888887777764 66666554
No 52
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.16 E-value=9.3e-11 Score=101.17 Aligned_cols=116 Identities=16% Similarity=0.127 Sum_probs=92.5
Q ss_pred CCCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccce
Q 048591 160 SKKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRY 239 (286)
Q Consensus 160 ~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~ 239 (286)
....++.+.+..+.......+..+++|+.|.+.++.... + +.+..+++|+.|++++|.++.+|. ++.+++|++
T Consensus 61 ~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~-----~-~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 133 (308)
T 1h6u_A 61 YLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN-----V-SAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQV 133 (308)
T ss_dssp GCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC-----C-GGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred ccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCC-----c-hhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCE
Confidence 456788888888775433336688889999998888754 2 357888899999999999888775 888999999
Q ss_pred eeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591 240 LKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT 285 (286)
Q Consensus 240 L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~ 285 (286)
|++++|.+..+|. + +.+++|++|++++|.+..+|. +.++++|+
T Consensus 134 L~l~~n~l~~~~~-l-~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~ 176 (308)
T 1h6u_A 134 LYLDLNQITNISP-L-AGLTNLQYLSIGNAQVSDLTP-LANLSKLT 176 (308)
T ss_dssp EECCSSCCCCCGG-G-GGCTTCCEEECCSSCCCCCGG-GTTCTTCC
T ss_pred EECCCCccCcCcc-c-cCCCCccEEEccCCcCCCChh-hcCCCCCC
Confidence 9999999888877 6 889999999999998888876 77776664
No 53
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.16 E-value=2.6e-11 Score=107.86 Aligned_cols=110 Identities=17% Similarity=0.095 Sum_probs=58.8
Q ss_pred CCEEEEEEecCCCcc-c-ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhh-ccccccc
Q 048591 162 KNVKRINVFYKQSDF-V-HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGI-ENLFLLR 238 (286)
Q Consensus 162 ~~~r~l~l~~~~~~~-~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i-~~L~~L~ 238 (286)
..++.+.+..+.... + ..+..+++|++|.+.++.... ..+..+..+++|+.|++++|.++.+|..+ +.+++|+
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 144 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY----LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 144 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCc----CCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence 445555555544321 1 133355566666665555543 33444556666666666666666555443 5566666
Q ss_pred eeeeccccccccchhHhhCCCCccEEecCCCCccccc
Q 048591 239 YLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTA 275 (286)
Q Consensus 239 ~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP 275 (286)
+|++++|.+..+|...++.+++|++|++++|.+..+|
T Consensus 145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 181 (390)
T 3o6n_A 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 181 (390)
T ss_dssp EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC
T ss_pred EEECCCCccCccChhhccCCCCCCEEECCCCcCCccc
Confidence 6666666655554432256666666666666554443
No 54
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.15 E-value=1.6e-10 Score=99.70 Aligned_cols=113 Identities=17% Similarity=0.168 Sum_probs=61.2
Q ss_pred CCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceee
Q 048591 162 KNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLK 241 (286)
Q Consensus 162 ~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~ 241 (286)
..++.+.+..+.......+..+++|+.|.+.++..... + .+..+++|+.|++++|.++.+|. ++.+++|++|+
T Consensus 107 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~-----~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 179 (308)
T 1h6u_A 107 QSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNI-----S-PLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLK 179 (308)
T ss_dssp TTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCC-----G-GGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcC-----c-cccCCCCccEEEccCCcCCCChh-hcCCCCCCEEE
Confidence 34444554444433222233455555555555544321 1 15556666666666666665554 55666666666
Q ss_pred eccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhcc
Q 048591 242 LNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARN 284 (286)
Q Consensus 242 L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~ 284 (286)
+++|.+..+|. + ..+++|++|++++|.+..+|. +.++++|
T Consensus 180 l~~n~l~~~~~-l-~~l~~L~~L~L~~N~l~~~~~-l~~l~~L 219 (308)
T 1h6u_A 180 ADDNKISDISP-L-ASLPNLIEVHLKNNQISDVSP-LANTSNL 219 (308)
T ss_dssp CCSSCCCCCGG-G-GGCTTCCEEECTTSCCCBCGG-GTTCTTC
T ss_pred CCCCccCcChh-h-cCCCCCCEEEccCCccCcccc-ccCCCCC
Confidence 66666666554 4 666666666666666655553 5555544
No 55
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.15 E-value=7.2e-11 Score=104.15 Aligned_cols=120 Identities=16% Similarity=0.104 Sum_probs=96.4
Q ss_pred CCCCEEEEEEecCCCcc-c-ccCC-CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCch-hhcccc
Q 048591 160 SKKNVKRINVFYKQSDF-V-HFVD-DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPS-GIENLF 235 (286)
Q Consensus 160 ~~~~~r~l~l~~~~~~~-~-~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~ 235 (286)
.+..++.|.+..+.... + ..+. .+++|+.|.+.++.... ..+..|..+++|+.|+|++|.++.+|. .+..+.
T Consensus 37 ~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~----i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 112 (361)
T 2xot_A 37 LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF----ISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQ 112 (361)
T ss_dssp CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc----cChhhccCCCCCCEEECCCCcCCcCCHHHhCCCc
Confidence 45567889998887542 2 2343 78999999999998875 445678999999999999999998775 588999
Q ss_pred ccceeeeccccccccch-hHhhCCCCccEEecCCCCccccchHH----hhhhcc
Q 048591 236 LLRYLKLNIPSLKILPS-SLLSNLLNLYTLDMPFSYIDHTADEF----TLHARN 284 (286)
Q Consensus 236 ~L~~L~L~~~~i~~LP~-~i~~~L~~L~~L~l~~~~l~~lP~~i----~~L~~~ 284 (286)
+|++|+|++|.|..++. .+ ..+++|++|+|++|.+..+|..+ .++++|
T Consensus 113 ~L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L 165 (361)
T 2xot_A 113 ALEVLLLYNNHIVVVDRNAF-EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKL 165 (361)
T ss_dssp TCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCSCCGGGTC----CTTC
T ss_pred CCCEEECCCCcccEECHHHh-CCcccCCEEECCCCcCCeeCHHHhcCcccCCcC
Confidence 99999999999998854 56 99999999999999999999875 455554
No 56
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.15 E-value=1e-10 Score=98.62 Aligned_cols=114 Identities=20% Similarity=0.106 Sum_probs=73.2
Q ss_pred CCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhcccccccee
Q 048591 161 KKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYL 240 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L 240 (286)
...++.+.+..+.......+..+++|+.|.+.++..... +. +.. ++|+.|++++|.++.+| .++.+++|++|
T Consensus 62 l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l-----~~-~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L 133 (263)
T 1xeu_A 62 FTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNL-----NG-IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEIL 133 (263)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCC-----TT-CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEE
T ss_pred CCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCc-----Cc-ccc-CcccEEEccCCccCCCh-hhcCcccccEE
Confidence 456667777666643222255677777777777766532 11 222 66777777777777665 47777777777
Q ss_pred eeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591 241 KLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT 285 (286)
Q Consensus 241 ~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~ 285 (286)
++++|+++.+| .+ +.+++|++|++++|.+..+ ..+.++++|+
T Consensus 134 ~Ls~N~i~~~~-~l-~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~ 175 (263)
T 1xeu_A 134 SIRNNKLKSIV-ML-GFLSKLEVLDLHGNEITNT-GGLTRLKKVN 175 (263)
T ss_dssp ECTTSCCCBCG-GG-GGCTTCCEEECTTSCCCBC-TTSTTCCCCC
T ss_pred ECCCCcCCCCh-HH-ccCCCCCEEECCCCcCcch-HHhccCCCCC
Confidence 77777777776 46 7777777777777777655 4455555543
No 57
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.15 E-value=4.6e-11 Score=94.47 Aligned_cols=92 Identities=16% Similarity=0.106 Sum_probs=77.3
Q ss_pred eEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhccccccceeeeccccccccchhHhhCCCCccEEe
Q 048591 187 HSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLD 265 (286)
Q Consensus 187 r~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~ 265 (286)
+++.+.++.... +|..+ .++|+.|+|++|.++.+ |..++.+++|++|+|++|+|+.+|..+|+++++|++|+
T Consensus 15 ~~l~~~~n~l~~-----iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~ 87 (174)
T 2r9u_A 15 TLVNCQNIRLAS-----VPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLD 87 (174)
T ss_dssp SEEECCSSCCSS-----CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cEEEeCCCCCCc-----cCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEE
Confidence 567777777753 33333 27899999999999988 56789999999999999999999998658999999999
Q ss_pred cCCCCccccchH-HhhhhccC
Q 048591 266 MPFSYIDHTADE-FTLHARNT 285 (286)
Q Consensus 266 l~~~~l~~lP~~-i~~L~~~~ 285 (286)
+++|++..+|.+ +.++++|+
T Consensus 88 L~~N~l~~l~~~~~~~l~~L~ 108 (174)
T 2r9u_A 88 LNDNHLKSIPRGAFDNLKSLT 108 (174)
T ss_dssp CCSSCCCCCCTTTTTTCTTCS
T ss_pred CCCCccceeCHHHhccccCCC
Confidence 999999999886 77777764
No 58
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.14 E-value=3.5e-11 Score=114.00 Aligned_cols=120 Identities=9% Similarity=0.113 Sum_probs=91.1
Q ss_pred CCCCEEEEEEecCCCc-------------------ccccCC--CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEE
Q 048591 160 SKKNVKRINVFYKQSD-------------------FVHFVD--DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLD 218 (286)
Q Consensus 160 ~~~~~r~l~l~~~~~~-------------------~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~ 218 (286)
....++.+.+..+... ++..++ ++++|++|.+.++.... .+|..+.++++|+.|+
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT----KLPTFLKALPEMQLIN 279 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS----SCCTTTTTCSSCCEEE
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc----cChHHHhcCCCCCEEE
Confidence 4567788888877632 566666 78888888888887655 5567778888888888
Q ss_pred eeCCC-Cc--cCchhhccc------cccceeeeccccccccch--hHhhCCCCccEEecCCCCcc-ccchHHhhhhccC
Q 048591 219 LGSLV-LI--QYPSGIENL------FLLRYLKLNIPSLKILPS--SLLSNLLNLYTLDMPFSYID-HTADEFTLHARNT 285 (286)
Q Consensus 219 l~~~~-l~--~lp~~i~~L------~~L~~L~L~~~~i~~LP~--~i~~~L~~L~~L~l~~~~l~-~lP~~i~~L~~~~ 285 (286)
+++|. ++ .+|..++.+ ++|++|++++|++..+|. .+ +++++|++|++++|.+. .+| .++++++|+
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l-~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~ 356 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL-QKMKKLGMLECLYNQLEGKLP-AFGSEIKLA 356 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHH-TTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhh-ccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence 88887 76 478877776 788888888888888887 77 88888888888888875 777 666666554
No 59
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.13 E-value=4.8e-11 Score=116.30 Aligned_cols=119 Identities=12% Similarity=0.112 Sum_probs=73.5
Q ss_pred CCCCEEEEEEecCCCc-------------------ccccCC--CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEE
Q 048591 160 SKKNVKRINVFYKQSD-------------------FVHFVD--DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLD 218 (286)
Q Consensus 160 ~~~~~r~l~l~~~~~~-------------------~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~ 218 (286)
....++.+.+..+... +|..++ .+++|+.|.+.++.... .+|..+.++++|+.|+
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~----~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT----QLPDFLYDLPELQSLN 521 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC----SCCGGGGGCSSCCEEE
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc----cChHHHhCCCCCCEEE
Confidence 3456677777766532 445554 67777777777766544 4456666666666666
Q ss_pred eeCCC-Ccc--Cchhhcccc-------ccceeeeccccccccch--hHhhCCCCccEEecCCCCccccchHHhhhhcc
Q 048591 219 LGSLV-LIQ--YPSGIENLF-------LLRYLKLNIPSLKILPS--SLLSNLLNLYTLDMPFSYIDHTADEFTLHARN 284 (286)
Q Consensus 219 l~~~~-l~~--lp~~i~~L~-------~L~~L~L~~~~i~~LP~--~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~ 284 (286)
+++|. ++. +|..++.+. +|++|++++|.+..+|. .+ +++++|++|++++|.+..+| .++++++|
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l-~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L 597 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL-QKMVKLGLLDCVHNKVRHLE-AFGTNVKL 597 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH-TTCTTCCEEECTTSCCCBCC-CCCTTSEE
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh-hcCCCCCEEECCCCCcccch-hhcCCCcc
Confidence 66665 553 666666555 66666666666666666 56 66666666666666666666 55555544
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.13 E-value=5.2e-11 Score=104.58 Aligned_cols=117 Identities=18% Similarity=0.109 Sum_probs=62.9
Q ss_pred CCEEEEEEecCCCc-ccc-cCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hccccccc
Q 048591 162 KNVKRINVFYKQSD-FVH-FVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFLLR 238 (286)
Q Consensus 162 ~~~r~l~l~~~~~~-~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L~ 238 (286)
..++.+.+..+... .+. .+..+++|++|.+.++.... ..+..+..+++|++|++++|.++.+|.. ++.+++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 127 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT----IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT 127 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCS
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc----cCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCC
Confidence 35666666655533 111 23456666666666655543 2334455566666666666666655544 55566666
Q ss_pred eeeeccccccccch--hHhhCCCCccEEecCCC-Cccccc-hHHhhhhc
Q 048591 239 YLKLNIPSLKILPS--SLLSNLLNLYTLDMPFS-YIDHTA-DEFTLHAR 283 (286)
Q Consensus 239 ~L~L~~~~i~~LP~--~i~~~L~~L~~L~l~~~-~l~~lP-~~i~~L~~ 283 (286)
+|++++|.++.+|. .+ +++++|++|++++| .+..+| ..++++++
T Consensus 128 ~L~L~~n~l~~l~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 175 (353)
T 2z80_A 128 FLNLLGNPYKTLGETSLF-SHLTKLQILRVGNMDTFTKIQRKDFAGLTF 175 (353)
T ss_dssp EEECTTCCCSSSCSSCSC-TTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred EEECCCCCCcccCchhhh-ccCCCCcEEECCCCccccccCHHHccCCCC
Confidence 66666666665555 33 55666666666655 244442 33444443
No 61
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.13 E-value=8e-11 Score=94.50 Aligned_cols=114 Identities=18% Similarity=0.137 Sum_probs=90.4
Q ss_pred EEEEecCC-CcccccCCCCCCeeEEEEecCCCCCCCCchhhh-hhcCCCceEEEEeeCCCCccC-chhhccccccceeee
Q 048591 166 RINVFYKQ-SDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGI-ICLMLEFLRVLDLGSLVLIQY-PSGIENLFLLRYLKL 242 (286)
Q Consensus 166 ~l~l~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~L~~L~L 242 (286)
.+.+..+. ..++..+ ..+++.|.+.++.... ..+. .+..+++|+.|++++|.++.+ |..++.+++|++|+|
T Consensus 12 ~l~~s~~~l~~ip~~~--~~~l~~L~l~~n~i~~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 12 TVDCTGRGLKEIPRDI--PLHTTELLLNDNELGR----ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp EEECTTSCCSSCCSCC--CTTCSEEECCSCCCCS----BCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred EEEcCCCCcCcCccCC--CCCCCEEECCCCcCCc----cCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 45555544 2344433 3489999999998864 2222 488999999999999999876 678999999999999
Q ss_pred ccccccccchhHhhCCCCccEEecCCCCcccc-chHHhhhhccC
Q 048591 243 NIPSLKILPSSLLSNLLNLYTLDMPFSYIDHT-ADEFTLHARNT 285 (286)
Q Consensus 243 ~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~l-P~~i~~L~~~~ 285 (286)
++|+|+.+|...|+.+++|++|++++|++..+ |..+..+++++
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence 99999998876439999999999999999655 77787777664
No 62
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.13 E-value=2.2e-10 Score=98.08 Aligned_cols=116 Identities=17% Similarity=0.084 Sum_probs=96.7
Q ss_pred CCCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccce
Q 048591 160 SKKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRY 239 (286)
Q Consensus 160 ~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~ 239 (286)
....++.+.+..+.......+..+++|+.|.+.++.... + +.+..+++|+.|++++|.++.++ .++.+++|++
T Consensus 66 ~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-----~-~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~ 138 (291)
T 1h6t_A 66 YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD-----L-SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLES 138 (291)
T ss_dssp GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-----G-GGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCE
T ss_pred cCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC-----C-hhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCE
Confidence 356788899988875533336689999999999998764 2 34889999999999999999875 6889999999
Q ss_pred eeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591 240 LKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT 285 (286)
Q Consensus 240 L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~ 285 (286)
|++++|.+..+ ..+ +.+++|++|++++|.+..+|. +..+++|+
T Consensus 139 L~l~~n~l~~~-~~l-~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~ 181 (291)
T 1h6t_A 139 LYLGNNKITDI-TVL-SRLTKLDTLSLEDNQISDIVP-LAGLTKLQ 181 (291)
T ss_dssp EECCSSCCCCC-GGG-GGCTTCSEEECCSSCCCCCGG-GTTCTTCC
T ss_pred EEccCCcCCcc-hhh-ccCCCCCEEEccCCccccchh-hcCCCccC
Confidence 99999999988 567 999999999999999988876 77777764
No 63
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.12 E-value=1.4e-10 Score=95.16 Aligned_cols=107 Identities=18% Similarity=0.171 Sum_probs=92.1
Q ss_pred CCCCEEEEEEecCCCccc--ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhccccc
Q 048591 160 SKKNVKRINVFYKQSDFV--HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLFL 236 (286)
Q Consensus 160 ~~~~~r~l~l~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~ 236 (286)
....++.+.+..+..... ..+..+++|+.|.+.++.... ..+..|..+++|+.|+|++|.++.+ |..++.+++
T Consensus 55 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 130 (220)
T 2v70_A 55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN----VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS 130 (220)
T ss_dssp GCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCC----CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTT
T ss_pred cCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCc----cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCcc
Confidence 356789999988875532 246689999999999999876 5567799999999999999999876 678999999
Q ss_pred cceeeecccccccc-chhHhhCCCCccEEecCCCCc
Q 048591 237 LRYLKLNIPSLKIL-PSSLLSNLLNLYTLDMPFSYI 271 (286)
Q Consensus 237 L~~L~L~~~~i~~L-P~~i~~~L~~L~~L~l~~~~l 271 (286)
|++|+|++|.++.+ |..+ ..+++|++|++++|.+
T Consensus 131 L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 131 VRLLSLYDNQITTVAPGAF-DTLHSLSTLNLLANPF 165 (220)
T ss_dssp CSEEECTTSCCCCBCTTTT-TTCTTCCEEECCSCCE
T ss_pred CCEEECCCCcCCEECHHHh-cCCCCCCEEEecCcCC
Confidence 99999999999988 5666 9999999999999976
No 64
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.12 E-value=4.2e-11 Score=106.52 Aligned_cols=88 Identities=11% Similarity=-0.019 Sum_probs=40.8
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCc
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNL 261 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L 261 (286)
.+++|+.|.+.++.... ..+..+..+++|+.|++++|.++.+|..++.+++|++|++++|++..+|..+ +.+++|
T Consensus 246 ~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L 320 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEK----IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ-PQFDRL 320 (390)
T ss_dssp GCTTCSEEECCSSCCCE----EESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGH-HHHTTC
T ss_pred CCCCccEEECCCCcCCC----cChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccc-cccCcC
Confidence 34444444444444332 2233444444444444444444444444444444455555444444444444 444444
Q ss_pred cEEecCCCCcccc
Q 048591 262 YTLDMPFSYIDHT 274 (286)
Q Consensus 262 ~~L~l~~~~l~~l 274 (286)
++|++++|.+..+
T Consensus 321 ~~L~L~~N~i~~~ 333 (390)
T 3o6n_A 321 ENLYLDHNSIVTL 333 (390)
T ss_dssp SEEECCSSCCCCC
T ss_pred CEEECCCCcccee
Confidence 4455544444433
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.12 E-value=1.3e-10 Score=98.47 Aligned_cols=91 Identities=16% Similarity=0.156 Sum_probs=40.8
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCcc--CchhhccccccceeeeccccccccchhHhhCCC
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQ--YPSGIENLFLLRYLKLNIPSLKILPSSLLSNLL 259 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~--lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~ 259 (286)
.+++|++|.+.++.... ..+..+..+++|+.|++++|.+.. +|..++.+++|++|++++|++..+|...+..+.
T Consensus 98 ~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 173 (276)
T 2z62_A 98 GLSSLQKLVAVETNLAS----LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173 (276)
T ss_dssp TCTTCCEEECTTSCCCC----STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred CCccccEEECCCCCccc----cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh
Confidence 44455555554444432 112234444555555555555443 344455555555555555554444322113333
Q ss_pred Ccc----EEecCCCCccccch
Q 048591 260 NLY----TLDMPFSYIDHTAD 276 (286)
Q Consensus 260 ~L~----~L~l~~~~l~~lP~ 276 (286)
+|+ .|++++|.+..+|.
T Consensus 174 ~L~~l~l~L~ls~n~l~~~~~ 194 (276)
T 2z62_A 174 QMPLLNLSLDLSLNPMNFIQP 194 (276)
T ss_dssp TCTTCCEEEECCSSCCCEECT
T ss_pred hccccceeeecCCCcccccCc
Confidence 333 44555554444443
No 66
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.12 E-value=8.3e-11 Score=97.52 Aligned_cols=115 Identities=14% Similarity=0.048 Sum_probs=69.7
Q ss_pred CCCEEEEEEecCC-Cc-ccc-cCCCCCCeeEEEEec-CCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccc
Q 048591 161 KKNVKRINVFYKQ-SD-FVH-FVDDDSHMHSLLYFT-SKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFL 236 (286)
Q Consensus 161 ~~~~r~l~l~~~~-~~-~~~-~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~ 236 (286)
...++.+.+..+. .. ++. .+..+++|++|.+.+ +.... ..+..|..+++|+.|++++|.++.+|. ++.+.+
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~----i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~ 128 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY----IDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYS 128 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE----ECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCB
T ss_pred CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE----cCHHHhCCCCCCCEEeCCCCCCccccc-cccccc
Confidence 3456666666653 32 221 233566666666665 55543 333456666667777777776666665 666666
Q ss_pred cc---eeeeccc-cccccchhHhhCCCCcc-EEecCCCCccccchHHhh
Q 048591 237 LR---YLKLNIP-SLKILPSSLLSNLLNLY-TLDMPFSYIDHTADEFTL 280 (286)
Q Consensus 237 L~---~L~L~~~-~i~~LP~~i~~~L~~L~-~L~l~~~~l~~lP~~i~~ 280 (286)
|+ +|++++| .++.+|...|+.+++|+ +|++++|++..+|..+..
T Consensus 129 L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~ 177 (239)
T 2xwt_C 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN 177 (239)
T ss_dssp CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT
T ss_pred cccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcC
Confidence 66 7777777 67767665336777777 777777777666665443
No 67
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.11 E-value=1.1e-10 Score=109.49 Aligned_cols=120 Identities=18% Similarity=0.163 Sum_probs=100.8
Q ss_pred CCCCEEEEEEecCCCc-c-cccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc-hhhccccc
Q 048591 160 SKKNVKRINVFYKQSD-F-VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFL 236 (286)
Q Consensus 160 ~~~~~r~l~l~~~~~~-~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~ 236 (286)
....++++.+..+... . +..+.++++|++|.+.++.... ..|..+.++++|++|++++|.+..+| ..++.+++
T Consensus 54 ~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 129 (606)
T 3vq2_A 54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS----FSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129 (606)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC----CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTT
T ss_pred CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc----cChhhcCCcccCCEEEccCCccccccccccCCCCC
Confidence 4568899999988744 2 3456689999999999998875 45778999999999999999998777 77999999
Q ss_pred cceeeecccccc--ccchhHhhCCCCccEEecCCCCcccc-chHHhhhhcc
Q 048591 237 LRYLKLNIPSLK--ILPSSLLSNLLNLYTLDMPFSYIDHT-ADEFTLHARN 284 (286)
Q Consensus 237 L~~L~L~~~~i~--~LP~~i~~~L~~L~~L~l~~~~l~~l-P~~i~~L~~~ 284 (286)
|++|++++|.+. .+|..+ +++++|++|++++|++..+ |..++.++++
T Consensus 130 L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 179 (606)
T 3vq2_A 130 LKKLNVAHNFIHSCKLPAYF-SNLTNLVHVDLSYNYIQTITVNDLQFLREN 179 (606)
T ss_dssp CCEEECCSSCCCCCCCCGGG-GTCTTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred CCEEeCCCCcccceechHhH-hhcCCCCEEEccCCcceecChhhhhhhhcc
Confidence 999999999987 579999 9999999999999999665 4557777655
No 68
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.10 E-value=1.6e-10 Score=106.61 Aligned_cols=115 Identities=13% Similarity=0.059 Sum_probs=90.4
Q ss_pred CCCEEEEEEecCCCcc-c-ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccc
Q 048591 161 KKNVKRINVFYKQSDF-V-HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLR 238 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~~-~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~ 238 (286)
...++++.+..+.... + ..+..+++|++|.+.++.... ..+..|..+++|++|++++|.++.+|.. .+++|+
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~ 93 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY----LDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLK 93 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE----EEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCS
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCCCccCC----cChHHhhcccCCCEEecCCCceeecCcc--ccCCcc
Confidence 4678888888887542 2 345588899999999888764 4567888999999999999998888876 788999
Q ss_pred eeeeccccccc--cchhHhhCCCCccEEecCCCCccccchHHhhhhcc
Q 048591 239 YLKLNIPSLKI--LPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARN 284 (286)
Q Consensus 239 ~L~L~~~~i~~--LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~ 284 (286)
+|++++|.+.. +|..+ +++++|++|++++|.+.. ..+..++++
T Consensus 94 ~L~L~~N~l~~~~~p~~~-~~l~~L~~L~L~~n~l~~--~~~~~l~~L 138 (520)
T 2z7x_B 94 HLDLSFNAFDALPICKEF-GNMSQLKFLGLSTTHLEK--SSVLPIAHL 138 (520)
T ss_dssp EEECCSSCCSSCCCCGGG-GGCTTCCEEEEEESSCCG--GGGGGGTTS
T ss_pred EEeccCCccccccchhhh-ccCCcceEEEecCcccch--hhccccccc
Confidence 99999998875 56788 999999999999988854 335555544
No 69
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.10 E-value=1.4e-10 Score=105.06 Aligned_cols=118 Identities=19% Similarity=0.117 Sum_probs=67.3
Q ss_pred CCEEEEEEecCCCc--ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhccccccc
Q 048591 162 KNVKRINVFYKQSD--FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLFLLR 238 (286)
Q Consensus 162 ~~~r~l~l~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~L~ 238 (286)
..++.+.+..+... .+..+..+++|+.|.+.++.... ..+..+..+++|+.|++++|.+..+ |..++.+++|+
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 350 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK----IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccc----cChhHhcCcccCCEEECCCCccCCcChhHhcCcccCC
Confidence 34566666655532 22334456666666666666543 3344556666666666666666544 34556666666
Q ss_pred eeeecccccccc-chhHhhCCCCccEEecCCCCccccchH-Hhhhhcc
Q 048591 239 YLKLNIPSLKIL-PSSLLSNLLNLYTLDMPFSYIDHTADE-FTLHARN 284 (286)
Q Consensus 239 ~L~L~~~~i~~L-P~~i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~~ 284 (286)
+|++++|++..+ |..+ +.+++|++|++++|++..+|.. +..+++|
T Consensus 351 ~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 397 (455)
T 3v47_A 351 VLDLSYNHIRALGDQSF-LGLPNLKELALDTNQLKSVPDGIFDRLTSL 397 (455)
T ss_dssp EEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred EEECCCCcccccChhhc-cccccccEEECCCCccccCCHhHhccCCcc
Confidence 666666666655 4445 6666666666666666555543 2444444
No 70
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.10 E-value=1e-10 Score=96.96 Aligned_cols=118 Identities=12% Similarity=0.071 Sum_probs=78.1
Q ss_pred CCCCEEEEEEec-CCCc-cc-ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceE---EEEeeCC-CCccCch-hh
Q 048591 160 SKKNVKRINVFY-KQSD-FV-HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLR---VLDLGSL-VLIQYPS-GI 231 (286)
Q Consensus 160 ~~~~~r~l~l~~-~~~~-~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr---~L~l~~~-~l~~lp~-~i 231 (286)
....++.+.+.. +... .+ ..+..+++|+.|.+.++.... ++. +..+++|+ .|++++| .++.+|. .+
T Consensus 78 ~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-----lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~ 151 (239)
T 2xwt_C 78 NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-----FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF 151 (239)
T ss_dssp SCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-----CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT
T ss_pred CCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-----ccc-cccccccccccEEECCCCcchhhcCcccc
Confidence 345677777776 5543 22 233467788888888777654 222 55555555 8888888 6777664 37
Q ss_pred ccccccc-eeeeccccccccchhHhhCCCCccEEecCCC-CccccchH-Hhhh-hcc
Q 048591 232 ENLFLLR-YLKLNIPSLKILPSSLLSNLLNLYTLDMPFS-YIDHTADE-FTLH-ARN 284 (286)
Q Consensus 232 ~~L~~L~-~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~-~l~~lP~~-i~~L-~~~ 284 (286)
+.+++|+ +|++++|+++.+|... ....+|++|++++| .+..+|.. +..+ +++
T Consensus 152 ~~l~~L~~~L~l~~n~l~~i~~~~-~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L 207 (239)
T 2xwt_C 152 QGLCNETLTLKLYNNGFTSVQGYA-FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGP 207 (239)
T ss_dssp TTTBSSEEEEECCSCCCCEECTTT-TTTCEEEEEECTTCTTCCEECTTTTTTCSBCC
T ss_pred cchhcceeEEEcCCCCCcccCHhh-cCCCCCCEEEcCCCCCcccCCHHHhhccccCC
Confidence 7778888 8888888887887776 44477888888888 47777543 4555 444
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.10 E-value=8e-11 Score=101.93 Aligned_cols=71 Identities=20% Similarity=0.178 Sum_probs=34.8
Q ss_pred CCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCccEEecCCCCcc--ccchHHhhhh
Q 048591 211 LEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYID--HTADEFTLHA 282 (286)
Q Consensus 211 l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~--~lP~~i~~L~ 282 (286)
+++|+.|++++|.++.+|..++.+++|++|++++|.++.+|..+ +.+++|+.|++++|.+. .+|..++.++
T Consensus 190 l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~-~~l~~L~~L~l~~N~~~~~~~~~~~~~~~ 262 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL-RFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262 (317)
T ss_dssp CTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTC-CCCTTCCEEECTTCCCBHHHHHHHHHTCH
T ss_pred cccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHh-hcCCCCCEEEccCCCccCcCHHHHHhccc
Confidence 44444455555544444444555555555555555555555544 55555555555555442 3444444443
No 72
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.09 E-value=9.8e-11 Score=92.16 Aligned_cols=93 Identities=17% Similarity=0.113 Sum_probs=77.3
Q ss_pred eeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhccccccceeeeccccccccchhHhhCCCCccEE
Q 048591 186 MHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTL 264 (286)
Q Consensus 186 Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L 264 (286)
.+++.+.++.... +|..+ .+.|+.|+|++|.++.+ |..++.+++|++|+|++|+|+.+|..+|..+++|++|
T Consensus 11 ~~~l~~s~n~l~~-----ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 11 GTTVDCSGKSLAS-----VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL 83 (170)
T ss_dssp TTEEECTTSCCSS-----CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCEEEeCCCCcCc-----cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence 3567777777754 33333 37899999999999988 5679999999999999999999999876899999999
Q ss_pred ecCCCCccccchH-HhhhhccC
Q 048591 265 DMPFSYIDHTADE-FTLHARNT 285 (286)
Q Consensus 265 ~l~~~~l~~lP~~-i~~L~~~~ 285 (286)
++++|++..+|.+ +.++++|+
T Consensus 84 ~L~~N~l~~~~~~~~~~l~~L~ 105 (170)
T 3g39_A 84 SLNDNQLKSIPRGAFDNLKSLT 105 (170)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCC
T ss_pred ECCCCccCEeCHHHhcCCCCCC
Confidence 9999999888875 77777764
No 73
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.09 E-value=1.6e-10 Score=104.98 Aligned_cols=113 Identities=20% Similarity=0.144 Sum_probs=70.0
Q ss_pred CCCCEEEEEEecCCCcc--cccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hccccc
Q 048591 160 SKKNVKRINVFYKQSDF--VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFL 236 (286)
Q Consensus 160 ~~~~~r~l~l~~~~~~~--~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~ 236 (286)
.+..++.+.+..+.... +..+..+++|+.|.+.++.... ..+..|..+++|+.|+|++|.++.+|.. ++.+++
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 148 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ----IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSK 148 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTT
T ss_pred CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCC----cChhhccCcccCCEEECCCCcCCccChhhhcccCC
Confidence 34567777777766442 2344567777777777776654 3445666777777777777777766643 666777
Q ss_pred cceeeeccccccccchhHhhCCCCccEEecCCC-Cccccch
Q 048591 237 LRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFS-YIDHTAD 276 (286)
Q Consensus 237 L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~-~l~~lP~ 276 (286)
|++|++++|.+..+|...|.++++|++|++++| .+..+|.
T Consensus 149 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 189 (452)
T 3zyi_A 149 LRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE 189 (452)
T ss_dssp CCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred CCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccCh
Confidence 777777777776666543355555555555553 3344443
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.09 E-value=7.4e-11 Score=108.25 Aligned_cols=117 Identities=10% Similarity=-0.026 Sum_probs=62.0
Q ss_pred CCEEEEEEecCCCcc--cccCCCCCCeeEEEEecCCCCCCCCchhhhhhc-CCCceEEEEeeCCCCccCchhhccccccc
Q 048591 162 KNVKRINVFYKQSDF--VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICL-MLEFLRVLDLGSLVLIQYPSGIENLFLLR 238 (286)
Q Consensus 162 ~~~r~l~l~~~~~~~--~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~-~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~ 238 (286)
..++.+.+..+.... +..+..+++|+.|.+.+|.... ..+..+. .+++|+.|+|++|.++.+|. ...+++|+
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~ 194 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT----VNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLK 194 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE----EEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCC
T ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC----cChHHHhhhCCcccEEecCCCccccccc-cccCCCCC
Confidence 345666666555331 2233355666666666665543 2233332 45556666666555554443 22355556
Q ss_pred eeeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhcc
Q 048591 239 YLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARN 284 (286)
Q Consensus 239 ~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~ 284 (286)
+|+|++|.+..+|+++ +.+++|++|++++|.+..+|..++.++++
T Consensus 195 ~L~Ls~N~l~~~~~~~-~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L 239 (487)
T 3oja_A 195 TLDLSSNKLAFMGPEF-QSAAGVTWISLRNNKLVLIEKALRFSQNL 239 (487)
T ss_dssp EEECCSSCCCEECGGG-GGGTTCSEEECTTSCCCEECTTCCCCTTC
T ss_pred EEECCCCCCCCCCHhH-cCCCCccEEEecCCcCcccchhhccCCCC
Confidence 6666655555555555 55556666666665555555555444443
No 75
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.09 E-value=9.1e-11 Score=108.83 Aligned_cols=118 Identities=20% Similarity=0.181 Sum_probs=64.9
Q ss_pred CCEEEEEEecCCCcc--cccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hccccccc
Q 048591 162 KNVKRINVFYKQSDF--VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFLLR 238 (286)
Q Consensus 162 ~~~r~l~l~~~~~~~--~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L~ 238 (286)
..++.+.+..+.... +..+..+++|++|.+.++.... ..+..|..+++|++|++++|.++.+|.. ++.+++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 101 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT----IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc----cChhhccccccCCEEECCCCccCccCHHHhccCCCCc
Confidence 456666666655331 2234456666666666665543 3334556666666666666666655543 66666666
Q ss_pred eeeeccccccc--cchhHhhCCCCccEEecCCCC-ccccc-hHHhhhhcc
Q 048591 239 YLKLNIPSLKI--LPSSLLSNLLNLYTLDMPFSY-IDHTA-DEFTLHARN 284 (286)
Q Consensus 239 ~L~L~~~~i~~--LP~~i~~~L~~L~~L~l~~~~-l~~lP-~~i~~L~~~ 284 (286)
+|++++|.+.. .|..+ +++++|++|++++|. +..+| ..++++++|
T Consensus 102 ~L~Ls~n~l~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 150 (549)
T 2z81_A 102 YLNLMGNPYQTLGVTSLF-PNLTNLQTLRIGNVETFSEIRRIDFAGLTSL 150 (549)
T ss_dssp EEECTTCCCSSSCSSCSC-TTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred EEECCCCcccccchhhhh-hccCCccEEECCCCccccccCHhhhhccccc
Confidence 66666666553 34445 666666666666654 34454 234444433
No 76
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.08 E-value=9.6e-11 Score=111.55 Aligned_cols=121 Identities=19% Similarity=0.104 Sum_probs=85.9
Q ss_pred CCCCEEEEEEecCCCc-cc-ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCch-hhccccc
Q 048591 160 SKKNVKRINVFYKQSD-FV-HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPS-GIENLFL 236 (286)
Q Consensus 160 ~~~~~r~l~l~~~~~~-~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~ 236 (286)
.+..++++.+..+... .+ ..+.++++|++|.+.++.... ..+..+.++++|++|++++|.++.+|. .++.+++
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK----LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC----CCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc----cCHHHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence 3467888888877643 22 234577888888888877765 445677788888888888888887775 4778888
Q ss_pred cceeeeccccccccch-hHhhCCCCccEEecCCCCccc-cchHHhhhhccC
Q 048591 237 LRYLKLNIPSLKILPS-SLLSNLLNLYTLDMPFSYIDH-TADEFTLHARNT 285 (286)
Q Consensus 237 L~~L~L~~~~i~~LP~-~i~~~L~~L~~L~l~~~~l~~-lP~~i~~L~~~~ 285 (286)
|++|++++|.+..+|. .+ +++++|++|++++|.+.. .|..++++++|+
T Consensus 99 L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 148 (680)
T 1ziw_A 99 LTELHLMSNSIQKIKNNPF-VKQKNLITLDLSHNGLSSTKLGTQVQLENLQ 148 (680)
T ss_dssp CSEEECCSSCCCCCCSCTT-TTCTTCCEEECCSSCCSCCCCCSSSCCTTCC
T ss_pred CCEEECCCCccCccChhHc-cccCCCCEEECCCCcccccCchhhcccccCC
Confidence 8888888888777764 45 788888888888887744 344455555543
No 77
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.08 E-value=2.2e-10 Score=110.72 Aligned_cols=98 Identities=19% Similarity=0.189 Sum_probs=48.1
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCc-cCchhhccccccceeeecccccc-ccchhHhhCCC
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-QYPSGIENLFLLRYLKLNIPSLK-ILPSSLLSNLL 259 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~~L~~L~L~~~~i~-~LP~~i~~~L~ 259 (286)
.+++|+.|.+.++.... ..+..+..+++|+.|++++|.+. .+|..++.+++|++|++++|++. .+|..+ +.++
T Consensus 440 ~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~-~~l~ 514 (768)
T 3rgz_A 440 SLSKLRDLKLWLNMLEG----EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI-GRLE 514 (768)
T ss_dssp GCTTCCEEECCSSCCCS----CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG-GGCT
T ss_pred cCCCCCEEECCCCcccC----cCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH-hcCC
Confidence 44445555544444432 23344444555555555555544 44445555555555555555544 445554 5555
Q ss_pred CccEEecCCCCc-cccchHHhhhhcc
Q 048591 260 NLYTLDMPFSYI-DHTADEFTLHARN 284 (286)
Q Consensus 260 ~L~~L~l~~~~l-~~lP~~i~~L~~~ 284 (286)
+|++|++++|++ +.+|..++++++|
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~l~~L 540 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGDCRSL 540 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGGCTTC
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCC
Confidence 555555555554 3455555544443
No 78
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.08 E-value=8.1e-11 Score=110.65 Aligned_cols=107 Identities=9% Similarity=-0.030 Sum_probs=54.7
Q ss_pred EEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeec
Q 048591 164 VKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLN 243 (286)
Q Consensus 164 ~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~ 243 (286)
++.+.+..+....+..+..+++|+.|.+.++.... ..+..+..+++|+.|+|++|.+..+|..++.+++|++|+|+
T Consensus 234 L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls 309 (597)
T 3oja_B 234 LTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK----IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS 309 (597)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE----EESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECC
T ss_pred CCEEECCCCCCCCChhhccCCCCCEEECCCCccCC----CCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECC
Confidence 44444444433322333345555555555555443 33444555555555555555555555555555555555555
Q ss_pred cccccccchhHhhCCCCccEEecCCCCccccc
Q 048591 244 IPSLKILPSSLLSNLLNLYTLDMPFSYIDHTA 275 (286)
Q Consensus 244 ~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP 275 (286)
+|.+..+|..+ +.+++|++|++++|.+..+|
T Consensus 310 ~N~l~~i~~~~-~~l~~L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 310 HNHLLHVERNQ-PQFDRLENLYLDHNSIVTLK 340 (597)
T ss_dssp SSCCCCCGGGH-HHHTTCSEEECCSSCCCCCC
T ss_pred CCCCCccCccc-ccCCCCCEEECCCCCCCCcC
Confidence 55555555555 55555555555555554443
No 79
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.07 E-value=3.2e-10 Score=106.59 Aligned_cols=111 Identities=16% Similarity=0.075 Sum_probs=78.9
Q ss_pred CCCEEEEEEecCCCcc-c-ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh-hcccccc
Q 048591 161 KKNVKRINVFYKQSDF-V-HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG-IENLFLL 237 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~~-~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~-i~~L~~L 237 (286)
...++.+.+..+.... + ..+..+++|++|.+.++.... ..+..|..+++|++|++++|.++.+|.. ++.+++|
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 149 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY----LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 149 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC----CCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCC
Confidence 3456777777666432 2 245577788888888777765 4456677888888888888888877765 4778888
Q ss_pred ceeeeccccccccchhHhhCCCCccEEecCCCCccccc
Q 048591 238 RYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTA 275 (286)
Q Consensus 238 ~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP 275 (286)
++|++++|.+..+|+..++.+++|++|++++|.+..+|
T Consensus 150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 187 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 187 (597)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC
Confidence 88888888877766542278888888888888776655
No 80
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.07 E-value=2.1e-10 Score=106.77 Aligned_cols=121 Identities=13% Similarity=0.045 Sum_probs=100.0
Q ss_pred CCCCEEEEEEecCCCcc--cccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc-hhhccccc
Q 048591 160 SKKNVKRINVFYKQSDF--VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFL 236 (286)
Q Consensus 160 ~~~~~r~l~l~~~~~~~--~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~ 236 (286)
.+..++++.+..+.... +..+..+++|++|++.++.... ..+..|.++++|++|++++|.++.+| ..++.+++
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~----i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc----cCcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence 45678899998887542 2245588999999999988764 44567889999999999999988766 67899999
Q ss_pred cceeeeccccccccch-hHhhCCCCccEEecCCCCcc--ccchHHhhhhccC
Q 048591 237 LRYLKLNIPSLKILPS-SLLSNLLNLYTLDMPFSYID--HTADEFTLHARNT 285 (286)
Q Consensus 237 L~~L~L~~~~i~~LP~-~i~~~L~~L~~L~l~~~~l~--~lP~~i~~L~~~~ 285 (286)
|++|++++|+++.+|. .+ +++++|++|++++|.+. ++|..++++++|+
T Consensus 102 L~~L~L~~n~l~~l~~~~~-~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~ 152 (570)
T 2z63_A 102 LQKLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152 (570)
T ss_dssp CCEEECTTSCCCCSTTCSC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred cccccccccccccCCCccc-cccccccEEecCCCccceecChhhhcccCCCC
Confidence 9999999999998887 56 99999999999999885 4789999888775
No 81
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.07 E-value=1.8e-10 Score=104.34 Aligned_cols=122 Identities=16% Similarity=0.042 Sum_probs=80.9
Q ss_pred CCCCEEEEEEecCCCc--ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhccccc
Q 048591 160 SKKNVKRINVFYKQSD--FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLFL 236 (286)
Q Consensus 160 ~~~~~r~l~l~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~ 236 (286)
.+..++++.+..+... .+..+.++++|++|.+.++..... ..+..|..+++|++|++++|.+..+ |..++.+++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~---i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 104 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV---IRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCE---ECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccce---ECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence 3456777777777643 234455777888888877765321 2345677777788888887777644 567777777
Q ss_pred cceeeeccccccc-cchh--HhhCCCCccEEecCCCCcccc-chH-HhhhhccC
Q 048591 237 LRYLKLNIPSLKI-LPSS--LLSNLLNLYTLDMPFSYIDHT-ADE-FTLHARNT 285 (286)
Q Consensus 237 L~~L~L~~~~i~~-LP~~--i~~~L~~L~~L~l~~~~l~~l-P~~-i~~L~~~~ 285 (286)
|++|++++|.+.. .|.. + +++++|++|++++|.+..+ |.. ++++++|+
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 157 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFF-KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH 157 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTT-TTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC
T ss_pred CCEEeCCCCCCCccccCcccc-cCcccCCEEECCCCccCccCcccccCCCCccc
Confidence 7777777777764 3443 5 7777777777777777554 444 56666554
No 82
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.07 E-value=3.9e-10 Score=106.02 Aligned_cols=115 Identities=17% Similarity=0.060 Sum_probs=81.0
Q ss_pred CCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhcccccccee
Q 048591 161 KKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYL 240 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L 240 (286)
...++.|.+..+....++.+..+++|+.|.+.++.... + +.+..+++|+.|+|++|.+..+ ..++.+++|+.|
T Consensus 86 l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~-----l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L 158 (605)
T 1m9s_A 86 LKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD-----I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTL 158 (605)
T ss_dssp CTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCC-----C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEE
T ss_pred CCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCC-----C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEE
Confidence 45667777777665544455577777777777777653 1 3467777788888888877776 467777888888
Q ss_pred eeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591 241 KLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT 285 (286)
Q Consensus 241 ~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~ 285 (286)
+|++|.+..+++ + +.+++|+.|+|++|.+..+| .+..|++|+
T Consensus 159 ~Ls~N~l~~~~~-l-~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~ 200 (605)
T 1m9s_A 159 SLEDNQISDIVP-L-AGLTKLQNLYLSKNHISDLR-ALAGLKNLD 200 (605)
T ss_dssp ECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCBCG-GGTTCTTCS
T ss_pred ECcCCcCCCchh-h-ccCCCCCEEECcCCCCCCCh-HHccCCCCC
Confidence 888887777766 6 77888888888888777665 366666554
No 83
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.07 E-value=4.4e-10 Score=106.42 Aligned_cols=98 Identities=13% Similarity=0.073 Sum_probs=48.5
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhcccc--------ccceeeeccccccccchh
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLF--------LLRYLKLNIPSLKILPSS 253 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~--------~L~~L~L~~~~i~~LP~~ 253 (286)
.+++|+.|.+.++.... ..+..+..+++|+.|++++|.++.+|..+.... +|++|++++|++..+|..
T Consensus 431 ~~~~L~~L~Ls~N~l~~----lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 506 (636)
T 4eco_A 431 KGINVSSINLSNNQISK----FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506 (636)
T ss_dssp CCCCEEEEECCSSCCCS----CCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGG
T ss_pred cCCCCCEEECcCCccCc----CCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChh
Confidence 34456666666655543 222334445555555555555544444332211 455555555555555555
Q ss_pred Hhh--CCCCccEEecCCCCccccchHHhhhhcc
Q 048591 254 LLS--NLLNLYTLDMPFSYIDHTADEFTLHARN 284 (286)
Q Consensus 254 i~~--~L~~L~~L~l~~~~l~~lP~~i~~L~~~ 284 (286)
+ + .+++|++|++++|++..+|..++++++|
T Consensus 507 ~-~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L 538 (636)
T 4eco_A 507 F-RATTLPYLVGIDLSYNSFSKFPTQPLNSSTL 538 (636)
T ss_dssp G-STTTCTTCCEEECCSSCCSSCCCGGGGCSSC
T ss_pred h-hhccCCCcCEEECCCCCCCCcChhhhcCCCC
Confidence 5 4 5555555555555554455555544444
No 84
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.06 E-value=3.2e-10 Score=102.55 Aligned_cols=104 Identities=20% Similarity=0.122 Sum_probs=60.0
Q ss_pred CCCEEEEEEecCCCcc--cccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCch-hhcccccc
Q 048591 161 KKNVKRINVFYKQSDF--VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPS-GIENLFLL 237 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~~--~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~L 237 (286)
+..++.+.+..+.... +..+.++++|+.|.+.++.... ..+..|..+++|+.|+|++|.++.+|. .+..+++|
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~----i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 138 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT----IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKL 138 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCE----ECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSC
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCc----cChhhccCCccCCEEECCCCcCCeeCHhHhhccccC
Confidence 4556666666665432 1234466667777766666543 334556666666666666666666654 45666666
Q ss_pred ceeeeccccccccchhHhhCCCCccEEecCC
Q 048591 238 RYLKLNIPSLKILPSSLLSNLLNLYTLDMPF 268 (286)
Q Consensus 238 ~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~ 268 (286)
++|++++|.+..+|...|.++++|++|++++
T Consensus 139 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred ceeeCCCCcccccCHHHhhhCcccCEeCCCC
Confidence 6666666666655553324455555555544
No 85
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=1.1e-10 Score=113.76 Aligned_cols=120 Identities=13% Similarity=0.224 Sum_probs=95.8
Q ss_pred CCCEEEEEEecCC--CcccccCCCCCCeeEEEEecCC-CCCCCCchhhhhhc-------CCCceEEEEeeCCCCccCch-
Q 048591 161 KKNVKRINVFYKQ--SDFVHFVDDDSHMHSLLYFTSK-SDHLDPIDWGIICL-------MLEFLRVLDLGSLVLIQYPS- 229 (286)
Q Consensus 161 ~~~~r~l~l~~~~--~~~~~~~~~~~~Lr~L~l~~~~-~~~~~~~~~~~~~~-------~l~~Lr~L~l~~~~l~~lp~- 229 (286)
...++.+.+..+. ...+..+.++++|+.|.+.++. .... .+|..+. .+++|+.|++++|.+..+|.
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~---~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~ 566 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA---QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHH---HHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccc---cchHHHHhhhhcccccCCccEEEeeCCcCCccCCh
Confidence 4678999998876 4466667789999999999987 5310 1344444 44589999999999888998
Q ss_pred -hhccccccceeeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhc-cC
Q 048591 230 -GIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHAR-NT 285 (286)
Q Consensus 230 -~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~-~~ 285 (286)
.++.+++|++|++++|.+..+| .+ +++++|++|++++|.+..+|..++++++ |+
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l~~lp-~~-~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~ 622 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKVRHLE-AF-GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVE 622 (876)
T ss_dssp HHHTTCTTCCEEECTTSCCCBCC-CC-CTTSEESEEECCSSCCSCCCTTSCEECTTCC
T ss_pred hhhhcCCCCCEEECCCCCcccch-hh-cCCCcceEEECcCCccccchHHHhhccccCC
Confidence 8999999999999999888888 77 8899999999999988888888887776 54
No 86
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.05 E-value=6.9e-10 Score=96.37 Aligned_cols=120 Identities=12% Similarity=0.094 Sum_probs=88.6
Q ss_pred CCCCEEEEEEecCCCc-cc-ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhcccccc
Q 048591 160 SKKNVKRINVFYKQSD-FV-HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLL 237 (286)
Q Consensus 160 ~~~~~r~l~l~~~~~~-~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L 237 (286)
.+..++.+.+..+... .+ ..+..+++|++|.+.++.... ..+..+..+++|+.|++++|.++.+|..+. ++|
T Consensus 50 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L 123 (330)
T 1xku_A 50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK----ISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTL 123 (330)
T ss_dssp CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC----BCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTC
T ss_pred CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCe----eCHHHhcCCCCCCEEECCCCcCCccChhhc--ccc
Confidence 3457788888877744 22 245588899999998888765 446778889999999999998888887665 678
Q ss_pred ceeeeccccccccchhHhhCCCCccEEecCCCCcc---ccchHHhhhhccC
Q 048591 238 RYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYID---HTADEFTLHARNT 285 (286)
Q Consensus 238 ~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~---~lP~~i~~L~~~~ 285 (286)
++|++++|.+..+|...++++++|++|++++|.+. ..|..+.++++|+
T Consensus 124 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174 (330)
T ss_dssp CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred cEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence 88888888887777654477888888888887663 3455566665553
No 87
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.05 E-value=2.5e-10 Score=104.22 Aligned_cols=98 Identities=13% Similarity=0.068 Sum_probs=47.8
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhccccccceeeeccccccccch-hHhhCCC
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKILPS-SLLSNLL 259 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~LP~-~i~~~L~ 259 (286)
++++|++|.+.++.... ..+..|.++++|+.|++++|.+..+ |..++.+++|++|++++|.+..++. .+ +.++
T Consensus 78 ~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~ 152 (477)
T 2id5_A 78 NLFNLRTLGLRSNRLKL----IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF-SGLN 152 (477)
T ss_dssp TCTTCCEEECCSSCCCS----CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSS-TTCT
T ss_pred CCccCCEEECCCCcCCc----cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhc-cCCC
Confidence 44445555554444432 2223344455555555555554432 3344555555555555555544433 33 5555
Q ss_pred CccEEecCCCCccccch-HHhhhhcc
Q 048591 260 NLYTLDMPFSYIDHTAD-EFTLHARN 284 (286)
Q Consensus 260 ~L~~L~l~~~~l~~lP~-~i~~L~~~ 284 (286)
+|++|++++|++..+|. .+.++++|
T Consensus 153 ~L~~L~l~~n~l~~~~~~~l~~l~~L 178 (477)
T 2id5_A 153 SLEQLTLEKCNLTSIPTEALSHLHGL 178 (477)
T ss_dssp TCCEEEEESCCCSSCCHHHHTTCTTC
T ss_pred CCCEEECCCCcCcccChhHhcccCCC
Confidence 66666666665555543 24444444
No 88
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.05 E-value=4.3e-10 Score=94.82 Aligned_cols=91 Identities=16% Similarity=0.038 Sum_probs=41.7
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCc
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNL 261 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L 261 (286)
.+++|+.|.+.++.... .+. +..+++|+.|++++|.++.+|.... .+|++|++++|+++.+| .+ +.+++|
T Consensus 61 ~l~~L~~L~L~~N~i~~-----~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l-~~l~~L 130 (263)
T 1xeu_A 61 FFTNLKELHLSHNQISD-----LSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTD-SL-IHLKNL 130 (263)
T ss_dssp GCTTCCEEECCSSCCCC-----CGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSG-GG-TTCTTC
T ss_pred hCCCCCEEECCCCccCC-----Chh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccCCCh-hh-cCcccc
Confidence 44455555555444432 111 4445555555555555444443222 44555555555544443 24 455555
Q ss_pred cEEecCCCCccccchHHhhhhc
Q 048591 262 YTLDMPFSYIDHTADEFTLHAR 283 (286)
Q Consensus 262 ~~L~l~~~~l~~lP~~i~~L~~ 283 (286)
++|++++|++..+| .++.+++
T Consensus 131 ~~L~Ls~N~i~~~~-~l~~l~~ 151 (263)
T 1xeu_A 131 EILSIRNNKLKSIV-MLGFLSK 151 (263)
T ss_dssp CEEECTTSCCCBCG-GGGGCTT
T ss_pred cEEECCCCcCCCCh-HHccCCC
Confidence 55555555544443 3444433
No 89
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.05 E-value=1.7e-10 Score=101.25 Aligned_cols=119 Identities=11% Similarity=-0.014 Sum_probs=70.6
Q ss_pred CCCEEEEEEecCCCcc--cccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCch--hhccccc
Q 048591 161 KKNVKRINVFYKQSDF--VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPS--GIENLFL 236 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~~--~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~--~i~~L~~ 236 (286)
...++.+.+..+.... +..+..+++|++|.+.++.... ..+..+..+++|++|++++|.++.+|. .++.+++
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~ 150 (353)
T 2z80_A 75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN----LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK 150 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS----CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTT
T ss_pred CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc----CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCC
Confidence 4556666666665331 2234466777777777766653 333446666777777777776666665 5666666
Q ss_pred cceeeeccc-cccccch-hHhhCCCCccEEecCCCCcccc-chHHhhhhcc
Q 048591 237 LRYLKLNIP-SLKILPS-SLLSNLLNLYTLDMPFSYIDHT-ADEFTLHARN 284 (286)
Q Consensus 237 L~~L~L~~~-~i~~LP~-~i~~~L~~L~~L~l~~~~l~~l-P~~i~~L~~~ 284 (286)
|++|++++| .+..+|. .+ +++++|++|++++|.+..+ |..++++++|
T Consensus 151 L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 200 (353)
T 2z80_A 151 LQILRVGNMDTFTKIQRKDF-AGLTFLEELEIDASDLQSYEPKSLKSIQNV 200 (353)
T ss_dssp CCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred CcEEECCCCccccccCHHHc-cCCCCCCEEECCCCCcCccCHHHHhccccC
Confidence 777776666 3555543 34 6666666666666666433 5555555443
No 90
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.05 E-value=1.3e-10 Score=99.77 Aligned_cols=117 Identities=20% Similarity=0.163 Sum_probs=69.7
Q ss_pred CCEEEEEEecCCCc--ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhccccccc
Q 048591 162 KNVKRINVFYKQSD--FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLFLLR 238 (286)
Q Consensus 162 ~~~r~l~l~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~L~ 238 (286)
..++.+.+..+... .+..+..+++|++|.+.++..... ..+..+..+++|+.|++++|.++.+ |..++.+++|+
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 202 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202 (306)
T ss_dssp TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc---cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCC
Confidence 45555655555432 222333556666666665554310 1345566677777777777776654 45667777777
Q ss_pred eeeeccccccccchhHhhCCCCccEEecCCCCcc-ccchHHhhh
Q 048591 239 YLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYID-HTADEFTLH 281 (286)
Q Consensus 239 ~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~-~lP~~i~~L 281 (286)
+|++++|.+..+|...++.+++|++|++++|.+. ..|..+..+
T Consensus 203 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp EEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred EEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence 7777777777666533277777777777777763 344445444
No 91
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.04 E-value=6.2e-10 Score=97.21 Aligned_cols=115 Identities=19% Similarity=0.064 Sum_probs=69.1
Q ss_pred CCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhcccccccee
Q 048591 161 KKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYL 240 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L 240 (286)
...++.+.+..+.......+..+++|++|.+.++.... + +.+..+++|+.|++++|.+..+|. +..+++|++|
T Consensus 65 ~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~-----~-~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L 137 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD-----I-SALQNLTNLRELYLNEDNISDISP-LANLTKMYSL 137 (347)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-----C-GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEE
T ss_pred cCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC-----c-hHHcCCCcCCEEECcCCcccCchh-hccCCceeEE
Confidence 45566666666553322224466666666666665543 1 246666677777777766666665 6666677777
Q ss_pred eeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhcc
Q 048591 241 KLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARN 284 (286)
Q Consensus 241 ~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~ 284 (286)
++++|.....+..+ +.+++|++|++++|.+..+|. +.+++++
T Consensus 138 ~l~~n~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~-~~~l~~L 179 (347)
T 4fmz_A 138 NLGANHNLSDLSPL-SNMTGLNYLTVTESKVKDVTP-IANLTDL 179 (347)
T ss_dssp ECTTCTTCCCCGGG-TTCTTCCEEECCSSCCCCCGG-GGGCTTC
T ss_pred ECCCCCCcccccch-hhCCCCcEEEecCCCcCCchh-hccCCCC
Confidence 77766433333345 677777777777776666554 5555544
No 92
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.04 E-value=4.5e-10 Score=108.64 Aligned_cols=118 Identities=14% Similarity=0.107 Sum_probs=102.6
Q ss_pred CCCEEEEEEecCCCc--ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCc-cCchhhcccccc
Q 048591 161 KKNVKRINVFYKQSD--FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-QYPSGIENLFLL 237 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-~lp~~i~~L~~L 237 (286)
...++.+.+..+... .+..+..+++|++|.+.++.... ..|..+..+++|++|++++|.+. .+|..++.+++|
T Consensus 441 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 516 (768)
T 3rgz_A 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG----EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS----CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC----cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCC
Confidence 456788888777643 55556688999999999999876 56788999999999999999988 899999999999
Q ss_pred ceeeecccccc-ccchhHhhCCCCccEEecCCCCc-cccchHHhhhhc
Q 048591 238 RYLKLNIPSLK-ILPSSLLSNLLNLYTLDMPFSYI-DHTADEFTLHAR 283 (286)
Q Consensus 238 ~~L~L~~~~i~-~LP~~i~~~L~~L~~L~l~~~~l-~~lP~~i~~L~~ 283 (286)
++|++++|++. .+|..+ +++++|++|++++|.+ +.+|..++++..
T Consensus 517 ~~L~L~~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~ 563 (768)
T 3rgz_A 517 AILKLSNNSFSGNIPAEL-GDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563 (768)
T ss_dssp CEEECCSSCCEEECCGGG-GGCTTCCEEECCSSEEESBCCGGGGTTTT
T ss_pred CEEECCCCcccCcCCHHH-cCCCCCCEEECCCCccCCcCChHHhcccc
Confidence 99999999987 889999 9999999999999998 689998887654
No 93
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.04 E-value=1.4e-10 Score=99.63 Aligned_cols=108 Identities=19% Similarity=0.153 Sum_probs=62.6
Q ss_pred CCCEEEEEEecCCCc-ccc-cCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccc
Q 048591 161 KKNVKRINVFYKQSD-FVH-FVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLR 238 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~-~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~ 238 (286)
+..++++.+..+... ++. .+..+++|+.|.+.++...... ..+..+..+++|++|++++|.+..+|..+..+++|+
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~ 104 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG--CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 104 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE--EEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCC
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc--CcccccccccccCEEECCCCccccChhhcCCCCCCC
Confidence 456777777776643 332 2346777778777777654211 113444456666666666666666665566666666
Q ss_pred eeeeccccccccch--hHhhCCCCccEEecCCCCc
Q 048591 239 YLKLNIPSLKILPS--SLLSNLLNLYTLDMPFSYI 271 (286)
Q Consensus 239 ~L~L~~~~i~~LP~--~i~~~L~~L~~L~l~~~~l 271 (286)
+|++++|.+..+|. .+ +.+++|++|++++|.+
T Consensus 105 ~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~l 138 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVF-LSLRNLIYLDISHTHT 138 (306)
T ss_dssp EEECTTSEEESSTTTTTT-TTCTTCCEEECTTSCC
T ss_pred EEECCCCcccccccchhh-hhccCCCEEECCCCcC
Confidence 66666666555543 34 5555555555555555
No 94
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.03 E-value=4.2e-10 Score=109.90 Aligned_cols=121 Identities=20% Similarity=0.115 Sum_probs=64.0
Q ss_pred CCCCEEEEEEecCCCc--ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhccccc
Q 048591 160 SKKNVKRINVFYKQSD--FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLFL 236 (286)
Q Consensus 160 ~~~~~r~l~l~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~ 236 (286)
.+..++.+.+..+... .+..+..+++|+.|.+.++..... ..+..|.++++|++|+|++|.+..+ |..++.+++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~---i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT---IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCE---ECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccc---cCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence 3455666666665533 123344566666666666533210 2244556666666666666665533 455566666
Q ss_pred cceeeeccccccc-cchh--HhhCCCCccEEecCCCCcccc--chHHhhhhcc
Q 048591 237 LRYLKLNIPSLKI-LPSS--LLSNLLNLYTLDMPFSYIDHT--ADEFTLHARN 284 (286)
Q Consensus 237 L~~L~L~~~~i~~-LP~~--i~~~L~~L~~L~l~~~~l~~l--P~~i~~L~~~ 284 (286)
|++|+|++|.+.. +|.. + +++++|++|++++|.+..+ |..+++|++|
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~-~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYF-RNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCC-SSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred cCEeeCcCCCCCcccccCccc-cccCCCCEEECCCCcccccccchhHhhCCCC
Confidence 6666666665543 3333 4 5556666666666555333 2345555544
No 95
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.03 E-value=4e-10 Score=102.69 Aligned_cols=113 Identities=14% Similarity=0.063 Sum_probs=69.9
Q ss_pred CCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceee
Q 048591 162 KNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLK 241 (286)
Q Consensus 162 ~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~ 241 (286)
..++.+.+..+.....+.+..+++|+.|.+.++.... .++ +..+++|+.|++++|.+..+|. ++.+++|++|+
T Consensus 46 ~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~-----~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD-----ITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCC-----CGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred ccccEEecCCCCCccCcchhhhcCCCEEECCCCccCC-----chh-hhccccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence 3455666655553322233356677777777766653 222 6667777777777777666665 66777777777
Q ss_pred eccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhcc
Q 048591 242 LNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARN 284 (286)
Q Consensus 242 L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~ 284 (286)
+++|.+..+|. + +++++|++|++++|.+..+|. ++++++|
T Consensus 119 L~~n~l~~~~~-~-~~l~~L~~L~l~~n~l~~~~~-~~~l~~L 158 (466)
T 1o6v_A 119 LFNNQITDIDP-L-KNLTNLNRLELSSNTISDISA-LSGLTSL 158 (466)
T ss_dssp CCSSCCCCCGG-G-TTCTTCSEEEEEEEEECCCGG-GTTCTTC
T ss_pred CCCCCCCCChH-H-cCCCCCCEEECCCCccCCChh-hccCCcc
Confidence 77777766665 5 677777777777776655553 4444433
No 96
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.03 E-value=2.4e-10 Score=105.42 Aligned_cols=111 Identities=19% Similarity=0.126 Sum_probs=78.4
Q ss_pred EEEEecCCC-cccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhccccccceeeec
Q 048591 166 RINVFYKQS-DFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLFLLRYLKLN 243 (286)
Q Consensus 166 ~l~l~~~~~-~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~L~~L~L~ 243 (286)
.+.+..+.. .++..+ .++++.|.+.++.... ..+..+..+++|++|++++|.++.+ |..++.+++|++|+++
T Consensus 4 ~l~ls~n~l~~ip~~~--~~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDL--SQKTTILNISQNYISE----LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp EEECTTSCCSSCCCSC--CTTCSEEECCSSCCCC----CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred eEecCCCCcccccccc--cccccEEECCCCcccc----cChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence 445555442 234333 2678888888877764 4456777888888888888887765 5677888888888888
Q ss_pred cccccccchhHhhCCCCccEEecCCCCccc--cchHHhhhhccC
Q 048591 244 IPSLKILPSSLLSNLLNLYTLDMPFSYIDH--TADEFTLHARNT 285 (286)
Q Consensus 244 ~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~--lP~~i~~L~~~~ 285 (286)
+|+++.+|.. .+++|++|++++|.+.. +|..++++++|+
T Consensus 78 ~N~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~ 118 (520)
T 2z7x_B 78 HNKLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118 (520)
T ss_dssp SSCCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCC
T ss_pred CCceeecCcc---ccCCccEEeccCCccccccchhhhccCCcce
Confidence 8888877775 67888888888887743 567777777664
No 97
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.02 E-value=2.6e-10 Score=107.06 Aligned_cols=106 Identities=12% Similarity=-0.033 Sum_probs=48.2
Q ss_pred CCCEEEEEEecCCCc-c-cccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhcccccc
Q 048591 161 KKNVKRINVFYKQSD-F-VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLFLL 237 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~-~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~L 237 (286)
+..++++.+..+... . +..+.++++|++|.+.++.... ..+..|.++++|+.|++++|.+..+ |..++.+++|
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 107 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW----IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL 107 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccce----eChhhccCccccCeeeCCCCcccccChhhhcccccc
Confidence 344555555555432 1 2233355555555555554432 2334444555555555555544422 3344444444
Q ss_pred ceeeecccccccc-chhHhhCCCCccEEecCCCCc
Q 048591 238 RYLKLNIPSLKIL-PSSLLSNLLNLYTLDMPFSYI 271 (286)
Q Consensus 238 ~~L~L~~~~i~~L-P~~i~~~L~~L~~L~l~~~~l 271 (286)
++|++++|.+..+ |..+ +++++|++|++++|.+
T Consensus 108 ~~L~L~~n~i~~l~~~~~-~~l~~L~~L~L~~n~l 141 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPL-HNQKTLESLYLGSNHI 141 (606)
T ss_dssp CEEECTTSCCSCGGGSCC-TTCTTCCEEECCSSCC
T ss_pred cEeeccccCcccCCcchh-ccCCcccEEECCCCcc
Confidence 4444444444444 2233 4444444444444444
No 98
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.02 E-value=5.4e-10 Score=104.19 Aligned_cols=107 Identities=17% Similarity=0.117 Sum_probs=81.2
Q ss_pred CCCCEEEEEEecCCCc-cc-ccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhcccccc
Q 048591 160 SKKNVKRINVFYKQSD-FV-HFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLL 237 (286)
Q Consensus 160 ~~~~~r~l~l~~~~~~-~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L 237 (286)
.+..++.+.+..+... .+ ..+..+++|++|.+.++.... ..+..|..+++|++|++++|.++.+|.. .+++|
T Consensus 50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L 123 (562)
T 3a79_B 50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS----LDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASL 123 (562)
T ss_dssp SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE----ECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTC
T ss_pred CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCc----CCHHHhCCCCCCCEEECCCCcCCccCcc--ccccC
Confidence 3467888888877744 22 355678888888888887764 4466788888888888888888888866 78888
Q ss_pred ceeeeccccccccc--hhHhhCCCCccEEecCCCCccc
Q 048591 238 RYLKLNIPSLKILP--SSLLSNLLNLYTLDMPFSYIDH 273 (286)
Q Consensus 238 ~~L~L~~~~i~~LP--~~i~~~L~~L~~L~l~~~~l~~ 273 (286)
++|++++|.+..+| ..+ +++++|++|++++|.+..
T Consensus 124 ~~L~Ls~N~l~~l~~p~~~-~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 124 RHLDLSFNDFDVLPVCKEF-GNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp SEEECCSSCCSBCCCCGGG-GGCTTCCEEEEECSBCCT
T ss_pred CEEECCCCCccccCchHhh-cccCcccEEecCCCcccc
Confidence 88888888887664 667 888888888888887754
No 99
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.02 E-value=5.9e-10 Score=102.27 Aligned_cols=117 Identities=14% Similarity=0.026 Sum_probs=97.2
Q ss_pred CCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCcc-Cchhhc-cccccce
Q 048591 162 KNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQ-YPSGIE-NLFLLRY 239 (286)
Q Consensus 162 ~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-lp~~i~-~L~~L~~ 239 (286)
..++.+.+..+........ .+++|++|.+.++.... ..+..+..+++|+.|++++|.++. .|..++ .+++|++
T Consensus 99 ~~L~~L~L~~N~l~~~~~~-~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS-RGQGKKNIYLANNKITM----LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC-CCSSCEEEECCSSCCCS----GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred CCcCEEECcCCcCCCCCcc-ccCCCCEEECCCCCCCC----CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence 5677788877765433222 57899999999999876 566778899999999999999885 556665 7999999
Q ss_pred eeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591 240 LKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT 285 (286)
Q Consensus 240 L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~ 285 (286)
|+|++|.+..+|.. ..+++|++|++++|.+..+|+.++.+++|+
T Consensus 174 L~Ls~N~l~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~ 217 (487)
T 3oja_A 174 LNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPEFQSAAGVT 217 (487)
T ss_dssp EECTTSCCCEEECC--CCCTTCCEEECCSSCCCEECGGGGGGTTCS
T ss_pred EecCCCcccccccc--ccCCCCCEEECCCCCCCCCCHhHcCCCCcc
Confidence 99999999999775 469999999999999999999898888775
No 100
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.01 E-value=1.6e-10 Score=99.76 Aligned_cols=120 Identities=14% Similarity=0.098 Sum_probs=77.5
Q ss_pred CCCEEEEEEecCCCc----ccccC--CCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc--hhhc
Q 048591 161 KKNVKRINVFYKQSD----FVHFV--DDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP--SGIE 232 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~----~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp--~~i~ 232 (286)
...++.+.+..+... .+... ..+++|+.|.+.++...... ......+..+++|+.|++++|.+...+ ..+.
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS-GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH-HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH-HHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 445666666665521 12222 35667777777666654210 012234456778888888888877544 3455
Q ss_pred cccccceeeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591 233 NLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT 285 (286)
Q Consensus 233 ~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~ 285 (286)
.+++|++|++++|.++.+|..+ . ++|++|++++|++..+|. +..+++|+
T Consensus 251 ~l~~L~~L~Ls~N~l~~ip~~~-~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~ 299 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLKQVPKGL-P--AKLSVLDLSYNRLDRNPS-PDELPQVG 299 (312)
T ss_dssp CCTTCCEEECTTSCCSSCCSSC-C--SEEEEEECCSSCCCSCCC-TTTSCEEE
T ss_pred hcCCCCEEECCCCccChhhhhc-c--CCceEEECCCCCCCCChh-HhhCCCCC
Confidence 6778888888888888888877 5 788888888888877776 66666653
No 101
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.00 E-value=7e-10 Score=95.96 Aligned_cols=119 Identities=10% Similarity=-0.013 Sum_probs=88.6
Q ss_pred CCCEEEEEEecCCCccc--ccCCCCCCeeEEEEecCCCCCCCCchhhhhh-cCCCceEEEEeeCCCCccCchhhcccccc
Q 048591 161 KKNVKRINVFYKQSDFV--HFVDDDSHMHSLLYFTSKSDHLDPIDWGIIC-LMLEFLRVLDLGSLVLIQYPSGIENLFLL 237 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~-~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L 237 (286)
...++.+.+..+..... ..+..+++|+.|.+.++.... ..+..+ ..+++|++|++++|.++.+|.. ..+++|
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L 193 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT----VNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKL 193 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE----EEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTC
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc----ccHHHHhhccCcCCEEECCCCcCcccccc-cccccC
Confidence 34567777777664322 233367788888888877754 233333 4678888888888888877643 358889
Q ss_pred ceeeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591 238 RYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT 285 (286)
Q Consensus 238 ~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~ 285 (286)
++|++++|.++.+|..+ +.+++|++|++++|.+..+|..+..+++++
T Consensus 194 ~~L~Ls~N~l~~l~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~ 240 (317)
T 3o53_A 194 KTLDLSSNKLAFMGPEF-QSAAGVTWISLRNNKLVLIEKALRFSQNLE 240 (317)
T ss_dssp CEEECCSSCCCEECGGG-GGGTTCSEEECTTSCCCEECTTCCCCTTCC
T ss_pred CEEECCCCcCCcchhhh-cccCcccEEECcCCcccchhhHhhcCCCCC
Confidence 99999999999998888 899999999999999888888887777664
No 102
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.00 E-value=8.3e-10 Score=96.00 Aligned_cols=107 Identities=14% Similarity=0.170 Sum_probs=86.1
Q ss_pred CCCCEEEEEEecCCCc-c-cccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhcccccc
Q 048591 160 SKKNVKRINVFYKQSD-F-VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLL 237 (286)
Q Consensus 160 ~~~~~r~l~l~~~~~~-~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L 237 (286)
....++.+.+..+... . +..+..+++|++|.+.++.... ..+..+..+++|+.|++++|.++.+|..+. ++|
T Consensus 52 ~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L 125 (332)
T 2ft3_A 52 ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK----IHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSL 125 (332)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE----ECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTC
T ss_pred CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCc----cCHhHhhCcCCCCEEECCCCcCCccCcccc--ccC
Confidence 3457888888887744 2 2345688999999999888764 456788899999999999999988887776 789
Q ss_pred ceeeeccccccccchhHhhCCCCccEEecCCCCcc
Q 048591 238 RYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYID 272 (286)
Q Consensus 238 ~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~ 272 (286)
++|++++|.+..+|...++.+++|++|++++|.+.
T Consensus 126 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp CEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred CEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 99999999998888764488999999999998774
No 103
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.00 E-value=6.2e-10 Score=100.98 Aligned_cols=122 Identities=16% Similarity=0.096 Sum_probs=56.0
Q ss_pred CCCEEEEEEecCCCc-cc-ccCCCCCCeeEEEEecCCCCCCCCc---------------------hhhhhhcCCCceEEE
Q 048591 161 KKNVKRINVFYKQSD-FV-HFVDDDSHMHSLLYFTSKSDHLDPI---------------------DWGIICLMLEFLRVL 217 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~-~~-~~~~~~~~Lr~L~l~~~~~~~~~~~---------------------~~~~~~~~l~~Lr~L 217 (286)
...++.+.+..+... .+ ..+..+++|+.|.+.++........ ..+..+..+++|+.|
T Consensus 122 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 201 (452)
T 3zyi_A 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201 (452)
T ss_dssp CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred cccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence 345666666665533 22 1233566677776666655421100 001123344444444
Q ss_pred EeeCCCCccCchhhccccccceeeecccccccc-chhHhhCCCCccEEecCCCCcccc-chHHhhhhcc
Q 048591 218 DLGSLVLIQYPSGIENLFLLRYLKLNIPSLKIL-PSSLLSNLLNLYTLDMPFSYIDHT-ADEFTLHARN 284 (286)
Q Consensus 218 ~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~L-P~~i~~~L~~L~~L~l~~~~l~~l-P~~i~~L~~~ 284 (286)
++++|.++.+| .+..+++|++|++++|.+..+ |..+ +++++|++|++++|++..+ |..+.++++|
T Consensus 202 ~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 268 (452)
T 3zyi_A 202 NLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSF-HGLSSLKKLWVMNSQVSLIERNAFDGLASL 268 (452)
T ss_dssp ECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGG-TTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ECCCCcccccc-cccccccccEEECcCCcCcccCcccc-cCccCCCEEEeCCCcCceECHHHhcCCCCC
Confidence 44444444443 244444555555555555444 2233 5555555555555555333 3334444433
No 104
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.00 E-value=7.5e-10 Score=96.15 Aligned_cols=109 Identities=17% Similarity=0.068 Sum_probs=68.6
Q ss_pred CCEEEEEEecCCCc-ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc-hhhccccccce
Q 048591 162 KNVKRINVFYKQSD-FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLRY 239 (286)
Q Consensus 162 ~~~r~l~l~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~~ 239 (286)
..++.+.+..+... ++... .++|+.|.+.++.... ..+..+..+++|+.|++++|.++.++ ..++.+++|++
T Consensus 171 ~~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 244 (330)
T 1xku_A 171 KKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITK----VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 244 (330)
T ss_dssp TTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCCE----ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCE
T ss_pred CCcCEEECCCCccccCCccc--cccCCEEECCCCcCCc----cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCE
Confidence 34555555544422 22211 2556666666555543 33456677777777777777776554 35777777777
Q ss_pred eeeccccccccchhHhhCCCCccEEecCCCCccccchH
Q 048591 240 LKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADE 277 (286)
Q Consensus 240 L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~ 277 (286)
|++++|.+..+|..+ +.+++|++|++++|++..+|..
T Consensus 245 L~L~~N~l~~lp~~l-~~l~~L~~L~l~~N~i~~~~~~ 281 (330)
T 1xku_A 245 LHLNNNKLVKVPGGL-ADHKYIQVVYLHNNNISAIGSN 281 (330)
T ss_dssp EECCSSCCSSCCTTT-TTCSSCCEEECCSSCCCCCCTT
T ss_pred EECCCCcCccCChhh-ccCCCcCEEECCCCcCCccChh
Confidence 777777777777777 7777777777777777666543
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.00 E-value=7.9e-10 Score=103.91 Aligned_cols=116 Identities=17% Similarity=0.083 Sum_probs=96.8
Q ss_pred CCCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccce
Q 048591 160 SKKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRY 239 (286)
Q Consensus 160 ~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~ 239 (286)
....++.|.+..+.......+..+++|+.|.+.++.... + +.+..+++|+.|+|++|.+..+| .++.+++|+.
T Consensus 63 ~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~-----l-~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~ 135 (605)
T 1m9s_A 63 YLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD-----L-SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLES 135 (605)
T ss_dssp GCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC-----C-TTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSE
T ss_pred cCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC-----C-hhhccCCCCCEEEecCCCCCCCc-cccCCCccCE
Confidence 456788899988875433335589999999999998864 2 36889999999999999999875 5889999999
Q ss_pred eeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591 240 LKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT 285 (286)
Q Consensus 240 L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~ 285 (286)
|+|++|.+..+ ..+ +.+++|+.|+|++|.+..+|+ +..+++|+
T Consensus 136 L~Ls~N~l~~l-~~l-~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~ 178 (605)
T 1m9s_A 136 LYLGNNKITDI-TVL-SRLTKLDTLSLEDNQISDIVP-LAGLTKLQ 178 (605)
T ss_dssp EECCSSCCCCC-GGG-GSCTTCSEEECCSSCCCCCGG-GTTCTTCC
T ss_pred EECCCCccCCc-hhh-cccCCCCEEECcCCcCCCchh-hccCCCCC
Confidence 99999999988 567 999999999999999987776 77777764
No 106
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.99 E-value=1.9e-09 Score=94.14 Aligned_cols=117 Identities=18% Similarity=0.098 Sum_probs=82.8
Q ss_pred CCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhcccccccee
Q 048591 161 KKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYL 240 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L 240 (286)
...++.+.+..+.......+..+++|++|.+.++.... . +.+..+++|+.|++++|.++.+| .++.+++|++|
T Consensus 220 ~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-----~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L 292 (347)
T 4fmz_A 220 MTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISD-----I-NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSL 292 (347)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-----C-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred CCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCC-----C-hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEE
Confidence 34566677766654433334467777777777776653 1 45777888888888888888775 47788888888
Q ss_pred eeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591 241 KLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT 285 (286)
Q Consensus 241 ~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~ 285 (286)
++++|.+...+...++.+++|++|++++|.+..+|+ +..+++|+
T Consensus 293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~ 336 (347)
T 4fmz_A 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMD 336 (347)
T ss_dssp ECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCS
T ss_pred ECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccc
Confidence 888888775544333888888888888888877766 66666654
No 107
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.99 E-value=3.9e-10 Score=98.06 Aligned_cols=113 Identities=13% Similarity=0.012 Sum_probs=92.2
Q ss_pred EEEEEEecCCC-cccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhccccccceee
Q 048591 164 VKRINVFYKQS-DFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLFLLRYLK 241 (286)
Q Consensus 164 ~r~l~l~~~~~-~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~L~~L~ 241 (286)
++.+.+..+.. .++..+ .++++.|.+.++.... ..+..+..+++|+.|++++|.++.+ |..++.+++|++|+
T Consensus 35 l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISE----LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred CCEEECCCCCccccCCCC--CCCCeEEECCCCcCCc----cCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 45566655543 344333 4789999999998764 4456799999999999999999866 67899999999999
Q ss_pred eccccccccchhHhhCCCCccEEecCCCCccccchH-HhhhhccC
Q 048591 242 LNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADE-FTLHARNT 285 (286)
Q Consensus 242 L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~~~ 285 (286)
+++|.+..+|..+ . ++|++|++++|.+..+|.. +.++++|+
T Consensus 109 L~~n~l~~l~~~~-~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 150 (332)
T 2ft3_A 109 ISKNHLVEIPPNL-P--SSLVELRIHDNRIRKVPKGVFSGLRNMN 150 (332)
T ss_dssp CCSSCCCSCCSSC-C--TTCCEEECCSSCCCCCCSGGGSSCSSCC
T ss_pred CCCCcCCccCccc-c--ccCCEEECCCCccCccCHhHhCCCccCC
Confidence 9999999999988 5 8999999999999888865 67777654
No 108
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.99 E-value=1.2e-09 Score=101.84 Aligned_cols=122 Identities=12% Similarity=0.096 Sum_probs=86.0
Q ss_pred CCCEEEEEEecCCCc--ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCcc-Cchh-hcc---
Q 048591 161 KKNVKRINVFYKQSD--FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQ-YPSG-IEN--- 233 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-lp~~-i~~--- 233 (286)
...++.+.+..+... .+..+..+++|+.|.+.++...... ..+..+..+++|+.|++++|.+.. +|.. +..
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF--KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT--HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc--cchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 456777777776633 3444557778888888777765422 334556777777777777777664 5543 211
Q ss_pred ------------------c-cccceeeeccccccccchhHhhCCCCccEEecCCCCccccchH-HhhhhccC
Q 048591 234 ------------------L-FLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADE-FTLHARNT 285 (286)
Q Consensus 234 ------------------L-~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~~~ 285 (286)
+ ++|++|++++|+++.+|..+ +.+++|++|++++|++..+|.. +..+++++
T Consensus 430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 500 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDV-THLQALQELNVASNQLKSVPDGVFDRLTSLQ 500 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTT-TSSCCCSEEECCSSCCCCCCTTSTTTCTTCC
T ss_pred CCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhh-cCCCCCCEEECCCCCCCCCCHHHHhcCCCCC
Confidence 2 57888888888888899988 7899999999999998888887 77777664
No 109
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.99 E-value=9.5e-12 Score=100.37 Aligned_cols=106 Identities=15% Similarity=0.080 Sum_probs=79.5
Q ss_pred CCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceee
Q 048591 162 KNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLK 241 (286)
Q Consensus 162 ~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~ 241 (286)
..++.+.+..+.....+.+..+++|+.|.+.++.... ++..+..+++|+.|++++|.++.+| .++.+++|++|+
T Consensus 48 ~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~-----l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 48 KACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK-----IENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLY 121 (198)
T ss_dssp TTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECS-----CSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEE
T ss_pred CCCCEEECCCCCCccccccccCCCCCEEECCCCCccc-----ccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEE
Confidence 4566677766653322244477888888888887763 4456666788889999998888877 688888999999
Q ss_pred eccccccccch--hHhhCCCCccEEecCCCCcccc
Q 048591 242 LNIPSLKILPS--SLLSNLLNLYTLDMPFSYIDHT 274 (286)
Q Consensus 242 L~~~~i~~LP~--~i~~~L~~L~~L~l~~~~l~~l 274 (286)
+++|.+..+|. .+ +.+++|++|++++|.+...
T Consensus 122 l~~N~i~~~~~~~~l-~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 122 MSNNKITNWGEIDKL-AALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp ESEEECCCHHHHHHH-TTTTTCSEEEECSCHHHHH
T ss_pred CCCCcCCchhHHHHH-hcCCCCCEEEecCCccccc
Confidence 99988888775 66 8889999999999887443
No 110
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.98 E-value=7.7e-10 Score=100.04 Aligned_cols=98 Identities=26% Similarity=0.264 Sum_probs=56.9
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCC-CccCch-hhccccccceeeeccccccccchhHhhCCC
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLV-LIQYPS-GIENLFLLRYLKLNIPSLKILPSSLLSNLL 259 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l~~lp~-~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~ 259 (286)
.+++|+.|.+.++.... ..+..|..+++|+.|++++|. +..+|. .+..+++|++|++++|+++.+|. + ..++
T Consensus 134 ~l~~L~~L~L~~N~i~~----~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~ 207 (440)
T 3zyj_A 134 YLSKLKELWLRNNPIES----IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-L-TPLI 207 (440)
T ss_dssp SCSSCCEEECCSCCCCE----ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-C-TTCS
T ss_pred ccccCceeeCCCCcccc----cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-c-CCCc
Confidence 44455555555544432 223345555555555555533 444442 45667777777777777777764 5 6777
Q ss_pred CccEEecCCCCcccc-chHHhhhhccC
Q 048591 260 NLYTLDMPFSYIDHT-ADEFTLHARNT 285 (286)
Q Consensus 260 ~L~~L~l~~~~l~~l-P~~i~~L~~~~ 285 (286)
+|++|++++|.+..+ |..+.++++|+
T Consensus 208 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 234 (440)
T 3zyj_A 208 KLDELDLSGNHLSAIRPGSFQGLMHLQ 234 (440)
T ss_dssp SCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccCEEECCCCccCccChhhhccCccCC
Confidence 777777777777554 45566665553
No 111
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.97 E-value=1e-09 Score=100.12 Aligned_cols=120 Identities=20% Similarity=0.151 Sum_probs=66.8
Q ss_pred CCCEEEEEEecCCCc-ccc-cCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhcccccc
Q 048591 161 KKNVKRINVFYKQSD-FVH-FVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLFLL 237 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~-~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~L 237 (286)
...++.+.+..+... .+. .+..+++|+.|.+.++.... ..+..+..+++|+.|++++|.+..+ |..++.+++|
T Consensus 79 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 154 (477)
T 2id5_A 79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI----LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL 154 (477)
T ss_dssp CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTC
T ss_pred CccCCEEECCCCcCCccCcccccCCCCCCEEECCCCcccc----CChhHccccccCCEEECCCCccceeChhhccCCCCC
Confidence 345666666555432 221 23356666666666665543 3344556666666666666665533 3456666666
Q ss_pred ceeeeccccccccchhHhhCCCCccEEecCCCCccccch-HHhhhhcc
Q 048591 238 RYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTAD-EFTLHARN 284 (286)
Q Consensus 238 ~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~-~i~~L~~~ 284 (286)
++|++++|++..+|...++++++|+.|++++|.+..+|. .+.++++|
T Consensus 155 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L 202 (477)
T 2id5_A 155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL 202 (477)
T ss_dssp CEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTC
T ss_pred CEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCccc
Confidence 666666666666665433666666666666666644433 34444433
No 112
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.96 E-value=2.9e-11 Score=97.51 Aligned_cols=99 Identities=17% Similarity=0.122 Sum_probs=86.3
Q ss_pred cCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCC
Q 048591 179 FVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNL 258 (286)
Q Consensus 179 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L 258 (286)
.+..+++|+.|.+.++.... ++ .+..+++|+.|++++|.++.+|..++.+++|++|++++|.+..+| .+ +.+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-----l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~-~~l 114 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-----IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GI-EKL 114 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-----CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HH-HHH
T ss_pred HHhcCCCCCEEECCCCCCcc-----cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cc-ccC
Confidence 44478999999999988764 33 778899999999999999999998989999999999999999988 67 999
Q ss_pred CCccEEecCCCCccccch--HHhhhhccC
Q 048591 259 LNLYTLDMPFSYIDHTAD--EFTLHARNT 285 (286)
Q Consensus 259 ~~L~~L~l~~~~l~~lP~--~i~~L~~~~ 285 (286)
++|++|++++|.+..+|. .+.++++|+
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~ 143 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLE 143 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCS
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCC
Confidence 999999999999988775 677777664
No 113
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.96 E-value=5.7e-10 Score=103.43 Aligned_cols=120 Identities=12% Similarity=-0.007 Sum_probs=93.1
Q ss_pred CCCCEEEEEEecCCCcc--cccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCcc--Cchhhcccc
Q 048591 160 SKKNVKRINVFYKQSDF--VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQ--YPSGIENLF 235 (286)
Q Consensus 160 ~~~~~r~l~l~~~~~~~--~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~--lp~~i~~L~ 235 (286)
....++.+.+..+.... +..+..+++|++|++.++.... ..+..+..+++|++|++++|.++. .|..++.++
T Consensus 48 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 48 ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS----LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123 (549)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS----CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT
T ss_pred cCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc----cCHHHhccCCCCcEEECCCCcccccchhhhhhccC
Confidence 45678888888877442 2345688899999999988865 455668899999999999998874 467788899
Q ss_pred ccceeeecccc-ccccch-hHhhCCCCccEEecCCCCcc-ccchHHhhhhcc
Q 048591 236 LLRYLKLNIPS-LKILPS-SLLSNLLNLYTLDMPFSYID-HTADEFTLHARN 284 (286)
Q Consensus 236 ~L~~L~L~~~~-i~~LP~-~i~~~L~~L~~L~l~~~~l~-~lP~~i~~L~~~ 284 (286)
+|++|++++|. +..+|. .+ +++++|++|++++|.+. ..|..+++++++
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 174 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDF-AGLTSLNELEIKALSLRNYQSQSLKSIRDI 174 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred CccEEECCCCccccccCHhhh-hcccccCeeeccCCcccccChhhhhccccC
Confidence 99999999887 777875 56 88899999999888884 467777666554
No 114
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.94 E-value=3.1e-10 Score=97.82 Aligned_cols=74 Identities=18% Similarity=0.126 Sum_probs=50.1
Q ss_pred hcCCCceEEEEeeCCCCccC-chhhccc---cccceeeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhc
Q 048591 208 CLMLEFLRVLDLGSLVLIQY-PSGIENL---FLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHAR 283 (286)
Q Consensus 208 ~~~l~~Lr~L~l~~~~l~~l-p~~i~~L---~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~ 283 (286)
+..+++|+.|++++|.+... |..++.+ ++|++|++++|+++.+|..+ . ++|++|++++|++..+|. +..+++
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~--~~L~~L~Ls~N~l~~~~~-~~~l~~ 295 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL-P--AKLRVLDLSSNRLNRAPQ-PDELPE 295 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC-C--SCCSCEECCSCCCCSCCC-TTSCCC
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh-c--CCCCEEECCCCcCCCCch-hhhCCC
Confidence 45667777777777777654 6666665 47777777777777777766 4 677777777777766654 445554
Q ss_pred cC
Q 048591 284 NT 285 (286)
Q Consensus 284 ~~ 285 (286)
|+
T Consensus 296 L~ 297 (310)
T 4glp_A 296 VD 297 (310)
T ss_dssp CS
T ss_pred cc
Confidence 43
No 115
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.94 E-value=1e-09 Score=102.94 Aligned_cols=121 Identities=12% Similarity=-0.039 Sum_probs=83.9
Q ss_pred CCCCEEEEEEecCCCc--ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-chhhccccc
Q 048591 160 SKKNVKRINVFYKQSD--FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-PSGIENLFL 236 (286)
Q Consensus 160 ~~~~~r~l~l~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-p~~i~~L~~ 236 (286)
....++.+.+..+... .+..+.++++|++|.+.++.... ..+..+..+++|++|++++|.++.+ |..++.+++
T Consensus 55 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~ 130 (606)
T 3t6q_A 55 RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF----MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130 (606)
T ss_dssp TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSE----ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTT
T ss_pred cCccceEEECCCCccceeChhhccCccccCeeeCCCCcccc----cChhhhcccccccEeeccccCcccCCcchhccCCc
Confidence 3456777777777643 23445577888888888777654 4456777888888888888887766 466777888
Q ss_pred cceeeeccccccccc-hhHhhCCCCccEEecCCCCcccc-chHHhhhhccC
Q 048591 237 LRYLKLNIPSLKILP-SSLLSNLLNLYTLDMPFSYIDHT-ADEFTLHARNT 285 (286)
Q Consensus 237 L~~L~L~~~~i~~LP-~~i~~~L~~L~~L~l~~~~l~~l-P~~i~~L~~~~ 285 (286)
|++|++++|.+..++ +.+ ..+++|++|++++|.+..+ |..++.+++++
T Consensus 131 L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 131 LESLYLGSNHISSIKLPKG-FPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180 (606)
T ss_dssp CCEEECCSSCCCCCCCCTT-CCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred ccEEECCCCcccccCcccc-cCCcccCEEEcccCcccccChhhhhhhcccc
Confidence 888888888777652 223 3478888888888877555 45566666654
No 116
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.93 E-value=1.3e-09 Score=99.22 Aligned_cols=95 Identities=16% Similarity=0.155 Sum_probs=43.8
Q ss_pred CCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceee
Q 048591 162 KNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLK 241 (286)
Q Consensus 162 ~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~ 241 (286)
..++.+.+..+.....+ +..+++|+.|.+.++.... . .+..+++|++|++++|.++.+| ++.+++|++|+
T Consensus 64 ~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~-----~--~~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 64 TGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTN-----L--DVTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLN 133 (457)
T ss_dssp TTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSC-----C--CCTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred CCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCce-----e--ecCCCCcCCEEECCCCcCCeec--CCCCCcCCEEE
Confidence 34444444444422221 2344445555544444432 1 1444455555555555554443 44555555555
Q ss_pred eccccccccchhHhhCCCCccEEecCCC
Q 048591 242 LNIPSLKILPSSLLSNLLNLYTLDMPFS 269 (286)
Q Consensus 242 L~~~~i~~LP~~i~~~L~~L~~L~l~~~ 269 (286)
+++|+++.+| + +++++|++|++++|
T Consensus 134 l~~N~l~~l~--l-~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 134 CARNTLTEID--V-SHNTQLTELDCHLN 158 (457)
T ss_dssp CTTSCCSCCC--C-TTCTTCCEEECTTC
T ss_pred CCCCccceec--c-ccCCcCCEEECCCC
Confidence 5555554443 3 45555555555555
No 117
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.93 E-value=1.7e-09 Score=102.83 Aligned_cols=70 Identities=26% Similarity=0.409 Sum_probs=44.3
Q ss_pred hcCCCceEEEEeeCCCCccCch-hhccccccceeeeccccccccchhHhhCCCCccEEecCCCCccccchH
Q 048591 208 CLMLEFLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADE 277 (286)
Q Consensus 208 ~~~l~~Lr~L~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~ 277 (286)
+..+++|++|++++|.++.+|. .++.+++|++|++++|+++.+|...|..+++|++|++++|++..+|..
T Consensus 532 ~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~ 602 (680)
T 1ziw_A 532 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHH
T ss_pred hcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChh
Confidence 4555666666666666666664 356666666666666666666666545666666666666666555543
No 118
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.92 E-value=2.5e-10 Score=98.42 Aligned_cols=118 Identities=14% Similarity=0.040 Sum_probs=76.2
Q ss_pred CCCEEEEEEecCCCc--ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchh----hccc
Q 048591 161 KKNVKRINVFYKQSD--FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSG----IENL 234 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~----i~~L 234 (286)
...++.+.+..+... .+..+..+++|++|++.+|.............+..+++|++|++++|.++.+|.. ++.+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 446677777776643 2234446777777777777653210000112235677788888888877665542 4567
Q ss_pred cccceeeecccccccc-chhHhhCC---CCccEEecCCCCccccchHHh
Q 048591 235 FLLRYLKLNIPSLKIL-PSSLLSNL---LNLYTLDMPFSYIDHTADEFT 279 (286)
Q Consensus 235 ~~L~~L~L~~~~i~~L-P~~i~~~L---~~L~~L~l~~~~l~~lP~~i~ 279 (286)
++|++|++++|.+..+ |..+ +.+ ++|++|++++|++.++|..+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~-~~~~~~~~L~~L~Ls~N~l~~lp~~~~ 271 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSA-PRCMWSSALNSLNLSFAGLEQVPKGLP 271 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCC-SSCCCCTTCCCEECCSSCCCSCCSCCC
T ss_pred CCCCEEECCCCCCCccchhhH-HhccCcCcCCEEECCCCCCCchhhhhc
Confidence 7888888888887766 7777 666 588888888888777776553
No 119
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.90 E-value=9.7e-10 Score=94.83 Aligned_cols=110 Identities=12% Similarity=0.034 Sum_probs=87.4
Q ss_pred CCCEEEEEEecCCCc--ccccC--CCCCCeeEEEEecCCCCCCCCchhhhhhcCC-----CceEEEEeeCCCCccCc-hh
Q 048591 161 KKNVKRINVFYKQSD--FVHFV--DDDSHMHSLLYFTSKSDHLDPIDWGIICLML-----EFLRVLDLGSLVLIQYP-SG 230 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~--~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l-----~~Lr~L~l~~~~l~~lp-~~ 230 (286)
...++++.+..+... .+..+ ..+++|+.|.+.++.... . +..+..+ ++|++|++++|.+..+| ..
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~----~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~ 168 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT----R-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSS----S-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcc----h-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHH
Confidence 457888999888743 44443 589999999999998875 2 4455555 89999999999999777 78
Q ss_pred hccccccceeeeccccccc---cchhH-hhCCCCccEEecCCCCccccc
Q 048591 231 IENLFLLRYLKLNIPSLKI---LPSSL-LSNLLNLYTLDMPFSYIDHTA 275 (286)
Q Consensus 231 i~~L~~L~~L~L~~~~i~~---LP~~i-~~~L~~L~~L~l~~~~l~~lP 275 (286)
++.+++|++|++++|++.. +|..+ ++.+++|++|++++|++..+|
T Consensus 169 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 217 (312)
T 1wwl_A 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217 (312)
T ss_dssp CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH
T ss_pred hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH
Confidence 9999999999999998643 34433 278999999999999997554
No 120
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.89 E-value=5.1e-09 Score=95.29 Aligned_cols=61 Identities=31% Similarity=0.322 Sum_probs=26.8
Q ss_pred hcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCccEEecCCCCc
Q 048591 208 CLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYI 271 (286)
Q Consensus 208 ~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l 271 (286)
+..+++|+.|++++|.+..+|. ++.+++|++|++++|++..+|. + +.+++|+.|++++|++
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~L~~n~l 321 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-I-SNLKNLTYLTLYFNNI 321 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-G-GGCTTCSEEECCSSCC
T ss_pred hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-h-cCCCCCCEEECcCCcC
Confidence 3444444444444444444433 4444444444444444444433 3 4444444444444444
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.89 E-value=2.3e-09 Score=99.95 Aligned_cols=107 Identities=12% Similarity=0.094 Sum_probs=70.1
Q ss_pred CEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhcccccc-----
Q 048591 163 NVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLL----- 237 (286)
Q Consensus 163 ~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L----- 237 (286)
.++.+.+..|....... .+++|+.|.+.+|.... +|. +. ++|+.|++++|.++.+|. ++. +|
T Consensus 141 ~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~-----lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~ 207 (571)
T 3cvr_A 141 LLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTF-----LPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEE 207 (571)
T ss_dssp TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSC-----CCC-CC--TTCCEEECCSSCCSSCCC-CC----------
T ss_pred cccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCC-----cch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccc
Confidence 44555555444321111 34566666666666543 222 33 678888888888887777 554 66
Q ss_pred --ceeeeccccccccchhHhhCCCCccEEecCCCCc-cccchHHhhhhc
Q 048591 238 --RYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYI-DHTADEFTLHAR 283 (286)
Q Consensus 238 --~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l-~~lP~~i~~L~~ 283 (286)
++|+|++|.|+.+|..+ +++++|++|++++|.+ ..+|..+++++.
T Consensus 208 ~L~~L~Ls~N~l~~lp~~l-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 208 TEIFFRCRENRITHIPENI-LSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCEEEECCSSCCCCCCGGG-GGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred cceEEecCCCcceecCHHH-hcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 88888888888888888 7788888888888887 567777777654
No 122
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.88 E-value=2.4e-09 Score=99.82 Aligned_cols=106 Identities=14% Similarity=0.076 Sum_probs=77.5
Q ss_pred CEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeee
Q 048591 163 NVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKL 242 (286)
Q Consensus 163 ~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L 242 (286)
.++.+.+..|.....+. .+++|+.|.+.+|.... +|. .+++|+.|++++|.++.+|. ++ ++|++|+|
T Consensus 121 ~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~-----lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~L 187 (571)
T 3cvr_A 121 SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTM-----LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDV 187 (571)
T ss_dssp TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEEC
T ss_pred CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCc-----CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEEC
Confidence 55566666555332111 46677777777776653 222 56788899999998888887 65 88999999
Q ss_pred ccccccccchhHhhCCCCc-------cEEecCCCCccccchHHhhhhccC
Q 048591 243 NIPSLKILPSSLLSNLLNL-------YTLDMPFSYIDHTADEFTLHARNT 285 (286)
Q Consensus 243 ~~~~i~~LP~~i~~~L~~L-------~~L~l~~~~l~~lP~~i~~L~~~~ 285 (286)
++|+|+.+|. + +. +| ++|++++|++..+|..++++++|+
T Consensus 188 s~N~L~~lp~-~-~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~ 233 (571)
T 3cvr_A 188 STNLLESLPA-V-PV--RNHHSEETEIFFRCRENRITHIPENILSLDPTC 233 (571)
T ss_dssp CSSCCSSCCC-C-C----------CCEEEECCSSCCCCCCGGGGGSCTTE
T ss_pred cCCCCCchhh-H-HH--hhhcccccceEEecCCCcceecCHHHhcCCCCC
Confidence 9999999998 7 65 77 999999999999999998887764
No 123
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.87 E-value=3.3e-09 Score=103.64 Aligned_cols=117 Identities=17% Similarity=0.018 Sum_probs=95.8
Q ss_pred CCCCEEEEEEecCCC--cc-cccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCcc-Cchh--hcc
Q 048591 160 SKKNVKRINVFYKQS--DF-VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQ-YPSG--IEN 233 (286)
Q Consensus 160 ~~~~~r~l~l~~~~~--~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-lp~~--i~~ 233 (286)
....++.+.+..+.. .+ +..+.++++|++|.+.++.... ..+..|.++++|+.|+|++|.+.. .|.. +++
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF----LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE----ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc----cCHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence 467789999988842 23 4456689999999999998865 557889999999999999999874 5655 899
Q ss_pred ccccceeeeccccccccc--hhHhhCCCCccEEecCCCCc-cccchHHhhh
Q 048591 234 LFLLRYLKLNIPSLKILP--SSLLSNLLNLYTLDMPFSYI-DHTADEFTLH 281 (286)
Q Consensus 234 L~~L~~L~L~~~~i~~LP--~~i~~~L~~L~~L~l~~~~l-~~lP~~i~~L 281 (286)
+++|++|++++|.+..++ ..+ +++++|++|++++|.+ ...|..++.+
T Consensus 122 L~~L~~L~Ls~N~l~~~~~~~~~-~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYLHPSF-GKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp CSSCCEEEEESCCCCCCCCCGGG-GTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred cCCCCEEECCCCcccccccchhH-hhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 999999999999988763 467 9999999999999988 4466777666
No 124
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.86 E-value=2.1e-09 Score=93.93 Aligned_cols=93 Identities=17% Similarity=0.037 Sum_probs=78.0
Q ss_pred cccccCCCCCCeeEEEEec-CCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc-hhhccccccceeeeccccccccch
Q 048591 175 DFVHFVDDDSHMHSLLYFT-SKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKILPS 252 (286)
Q Consensus 175 ~~~~~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~LP~ 252 (286)
.+|. +..+++|+.|.+.+ |.+.. ..+..|..+++|+.|+|++|.|+.+| ..++.|++|++|+|++|+|..+|.
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 97 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQH----LELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW 97 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCE----ECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCC----cChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCH
Confidence 4565 76888999999996 88765 55578999999999999999999776 467999999999999999999999
Q ss_pred hHhhCCCCccEEecCCCCccc
Q 048591 253 SLLSNLLNLYTLDMPFSYIDH 273 (286)
Q Consensus 253 ~i~~~L~~L~~L~l~~~~l~~ 273 (286)
.+|..+ .|++|+|.+|.+.-
T Consensus 98 ~~~~~~-~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 98 KTVQGL-SLQELVLSGNPLHC 117 (347)
T ss_dssp TTTCSC-CCCEEECCSSCCCC
T ss_pred HHcccC-CceEEEeeCCCccC
Confidence 883444 49999999998743
No 125
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.85 E-value=3.6e-09 Score=92.44 Aligned_cols=77 Identities=16% Similarity=0.101 Sum_probs=66.1
Q ss_pred hhhhhhcCCCceEEEEeeC-CCCccCc-hhhccccccceeeeccccccccchhHhhCCCCccEEecCCCCccccchHHhh
Q 048591 203 DWGIICLMLEFLRVLDLGS-LVLIQYP-SGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTL 280 (286)
Q Consensus 203 ~~~~~~~~l~~Lr~L~l~~-~~l~~lp-~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~ 280 (286)
.+|. +..+.+|+.|+|++ |.++.+| ..++.|.+|++|+|++|+|+.+|+..|++|++|++|+|++|++..+|.++..
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 101 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ 101 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcc
Confidence 4556 88899999999996 8899887 5689999999999999999988776559999999999999999888876544
No 126
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.79 E-value=5.7e-09 Score=94.89 Aligned_cols=111 Identities=14% Similarity=0.073 Sum_probs=93.6
Q ss_pred CCCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhcccccccee
Q 048591 161 KKNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYL 240 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L 240 (286)
...++.+.+..+...-.+.+..+++|+.|.+.++.... .+ +..+++|++|++++|.++.+| ++.+++|++|
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~-----~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT-----LD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSC-----CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred cCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCe-----Ec--cccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence 46788999988875433355589999999999998865 22 789999999999999999886 8899999999
Q ss_pred eeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591 241 KLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT 285 (286)
Q Consensus 241 ~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~ 285 (286)
++++|+++.+| + +++++|++|++++|++..+| ++++++|+
T Consensus 112 ~L~~N~l~~l~--~-~~l~~L~~L~l~~N~l~~l~--l~~l~~L~ 151 (457)
T 3bz5_A 112 NCDTNKLTKLD--V-SQNPLLTYLNCARNTLTEID--VSHNTQLT 151 (457)
T ss_dssp ECCSSCCSCCC--C-TTCTTCCEEECTTSCCSCCC--CTTCTTCC
T ss_pred ECCCCcCCeec--C-CCCCcCCEEECCCCccceec--cccCCcCC
Confidence 99999999987 7 99999999999999998776 66666554
No 127
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.78 E-value=1.2e-09 Score=94.76 Aligned_cols=100 Identities=15% Similarity=0.061 Sum_probs=54.1
Q ss_pred CCCCeeEEEEecC-CCCCCCCchhhhhhcCCCceEEEEeeCC-CCcc--Cchhhcccc-ccceeeeccccc----cccch
Q 048591 182 DDSHMHSLLYFTS-KSDHLDPIDWGIICLMLEFLRVLDLGSL-VLIQ--YPSGIENLF-LLRYLKLNIPSL----KILPS 252 (286)
Q Consensus 182 ~~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~l~~Lr~L~l~~~-~l~~--lp~~i~~L~-~L~~L~L~~~~i----~~LP~ 252 (286)
.+++|++|.+.++ .... ..++..+..+++|+.|++++| .++. +|..++.++ +|++|++++|.+ ..+|.
T Consensus 140 ~~~~L~~L~L~~~~~l~~---~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~ 216 (336)
T 2ast_B 140 KNSNLVRLNLSGCSGFSE---FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST 216 (336)
T ss_dssp TCTTCSEEECTTCBSCCH---HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH
T ss_pred cCCCCCEEECCCCCCCCH---HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH
Confidence 4555555555554 2211 013444555666666666666 5552 455555666 666666666632 34555
Q ss_pred hHhhCCCCccEEecCCCC-c-cccchHHhhhhccC
Q 048591 253 SLLSNLLNLYTLDMPFSY-I-DHTADEFTLHARNT 285 (286)
Q Consensus 253 ~i~~~L~~L~~L~l~~~~-l-~~lP~~i~~L~~~~ 285 (286)
.+ +++++|++|++++|. + ...|..++++++|+
T Consensus 217 ~~-~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 250 (336)
T 2ast_B 217 LV-RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 250 (336)
T ss_dssp HH-HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred HH-hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCC
Confidence 55 666666666666665 3 34555555555543
No 128
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.77 E-value=1.4e-08 Score=95.75 Aligned_cols=89 Identities=18% Similarity=0.111 Sum_probs=69.9
Q ss_pred CCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCcc
Q 048591 183 DSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLY 262 (286)
Q Consensus 183 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~ 262 (286)
+++|++|.+.+|.... ++ ..+++|+.|++++|.++.+|. .+++|++|++++|.|+.+|..+ +++++|+
T Consensus 220 ~~~L~~L~Ls~N~L~~-----lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l-~~l~~L~ 287 (622)
T 3g06_A 220 PSGLKELIVSGNRLTS-----LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESL-IHLSSET 287 (622)
T ss_dssp CTTCCEEECCSSCCSC-----CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGG-GGSCTTC
T ss_pred CCCCCEEEccCCccCc-----CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHH-hhccccC
Confidence 3567777777766543 22 456788889999988888887 6678999999999999999988 9999999
Q ss_pred EEecCCCCc-cccchHHhhhhc
Q 048591 263 TLDMPFSYI-DHTADEFTLHAR 283 (286)
Q Consensus 263 ~L~l~~~~l-~~lP~~i~~L~~ 283 (286)
.|++++|.+ ...|..+.+++.
T Consensus 288 ~L~L~~N~l~~~~~~~l~~L~~ 309 (622)
T 3g06_A 288 TVNLEGNPLSERTLQALREITS 309 (622)
T ss_dssp EEECCSCCCCHHHHHHHHHHHH
T ss_pred EEEecCCCCCCcCHHHHHhccc
Confidence 999999988 556777776654
No 129
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.77 E-value=2.9e-09 Score=92.46 Aligned_cols=120 Identities=8% Similarity=-0.007 Sum_probs=93.6
Q ss_pred CCCEEEEEEecCCCc---ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCC-CCc--cCchhhccc
Q 048591 161 KKNVKRINVFYKQSD---FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSL-VLI--QYPSGIENL 234 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~---~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~-~l~--~lp~~i~~L 234 (286)
...++.+.+..+... .+..+..+++|++|.+.++.... ..+..+..+++|+.|++++| .++ .+|..++.+
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~----~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~ 167 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD----PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 167 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH----HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH----HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcC
Confidence 467888888877632 33445578899999998887653 45667888999999999998 576 477778889
Q ss_pred cccceeeeccc-cccc--cchhHhhCCC-CccEEecCCCC--c--cccchHHhhhhccC
Q 048591 235 FLLRYLKLNIP-SLKI--LPSSLLSNLL-NLYTLDMPFSY--I--DHTADEFTLHARNT 285 (286)
Q Consensus 235 ~~L~~L~L~~~-~i~~--LP~~i~~~L~-~L~~L~l~~~~--l--~~lP~~i~~L~~~~ 285 (286)
++|++|++++| .+.. +|..+ +.++ +|++|++++|. + ..+|..+.++++|+
T Consensus 168 ~~L~~L~l~~~~~l~~~~~~~~~-~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~ 225 (336)
T 2ast_B 168 SRLDELNLSWCFDFTEKHVQVAV-AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 225 (336)
T ss_dssp TTCCEEECCCCTTCCHHHHHHHH-HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCS
T ss_pred CCCCEEcCCCCCCcChHHHHHHH-HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCC
Confidence 99999999999 7874 67777 8899 99999999994 4 56788777777765
No 130
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.74 E-value=2.4e-08 Score=94.02 Aligned_cols=68 Identities=18% Similarity=0.074 Sum_probs=58.2
Q ss_pred CCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCccEEecCCCCccccchHHhhhhccC
Q 048591 211 LEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADEFTLHARNT 285 (286)
Q Consensus 211 l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i~~L~~~~ 285 (286)
+++|+.|++++|.++.+| ..+++|++|++++|.|+.+|. .+++|++|++++|++..+|..++++++|+
T Consensus 220 ~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~ 287 (622)
T 3g06_A 220 PSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSET 287 (622)
T ss_dssp CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCGGGGGSCTTC
T ss_pred CCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCHHHhhccccC
Confidence 367888888888888888 456889999999999999988 35789999999999999999999988775
No 131
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.68 E-value=1.2e-08 Score=90.54 Aligned_cols=90 Identities=19% Similarity=0.146 Sum_probs=42.2
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhh-hhcCCCceEEEEeeCCCC-----ccCchhhccccccceeeeccccccc-----c
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGI-ICLMLEFLRVLDLGSLVL-----IQYPSGIENLFLLRYLKLNIPSLKI-----L 250 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~l-----~~lp~~i~~L~~L~~L~L~~~~i~~-----L 250 (286)
.+++|++|.+.++...........+ .+..+++|+.|+|++|.+ ..+|..+..+++|++|+|++|.+.. +
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence 3445555555555443100000111 444555555555555555 3445555555555555555555442 2
Q ss_pred chhHhhC--CCCccEEecCCCCcc
Q 048591 251 PSSLLSN--LLNLYTLDMPFSYID 272 (286)
Q Consensus 251 P~~i~~~--L~~L~~L~l~~~~l~ 272 (286)
|..+ .. +++|++|++++|.+.
T Consensus 265 ~~~l-~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 265 VDAF-SKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp HHHH-HTCSSCCCCEEECCSSCCB
T ss_pred HHHH-hhccCCCeEEEECcCCcCC
Confidence 4443 33 555555555555553
No 132
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.67 E-value=4.5e-08 Score=88.92 Aligned_cols=109 Identities=17% Similarity=0.120 Sum_probs=48.8
Q ss_pred CCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCc---------------hhhhhhcCCCceEEEEeeCCCCcc
Q 048591 162 KNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPI---------------DWGIICLMLEFLRVLDLGSLVLIQ 226 (286)
Q Consensus 162 ~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~---------------~~~~~~~~l~~Lr~L~l~~~~l~~ 226 (286)
..++.+.+..+.....+.+..+++|+.|.+.++........ .++ .+..+++|+.|++++|.++.
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc
Confidence 45556666555432222344556666666666554421100 011 23333334444444443333
Q ss_pred CchhhccccccceeeeccccccccchhHhhCCCCccEEecCCCCccccch
Q 048591 227 YPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTAD 276 (286)
Q Consensus 227 lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~ 276 (286)
+|... .+|++|++++|.+..+|. + +.+++|++|++++|++..+|.
T Consensus 210 l~~~~---~~L~~L~l~~n~l~~lp~-~-~~l~~L~~L~l~~N~l~~l~~ 254 (454)
T 1jl5_A 210 LPDLP---LSLESIVAGNNILEELPE-L-QNLPFLTTIYADNNLLKTLPD 254 (454)
T ss_dssp CCCCC---TTCCEEECCSSCCSSCCC-C-TTCTTCCEEECCSSCCSSCCS
T ss_pred CCCCc---CcccEEECcCCcCCcccc-c-CCCCCCCEEECCCCcCCcccc
Confidence 33211 234444444444444552 4 555555555555555554544
No 133
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.64 E-value=3.4e-08 Score=89.70 Aligned_cols=103 Identities=17% Similarity=0.112 Sum_probs=70.3
Q ss_pred CCEEEEEEecCCCcccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceee
Q 048591 162 KNVKRINVFYKQSDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLK 241 (286)
Q Consensus 162 ~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~ 241 (286)
..++.+.+..+....... -.++|++|.+.++.... +| .+..+++|++|++++|.++.+|..+ .+|++|+
T Consensus 111 ~~L~~L~l~~n~l~~l~~--~~~~L~~L~L~~n~l~~-----lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~ 179 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSD--LPPLLEYLGVSNNQLEK-----LP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIA 179 (454)
T ss_dssp TTCCEEECCSSCCSCCCS--CCTTCCEEECCSSCCSS-----CC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEE
T ss_pred CCCcEEECCCCccCcccC--CCCCCCEEECcCCCCCC-----Cc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEE
Confidence 556677776665332211 12678888888877653 23 4788888888888888888777543 4777888
Q ss_pred eccccccccchhHhhCCCCccEEecCCCCccccchH
Q 048591 242 LNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTADE 277 (286)
Q Consensus 242 L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~ 277 (286)
+++|.++.+| ++ +++++|++|++++|.+..+|..
T Consensus 180 L~~n~l~~l~-~~-~~l~~L~~L~l~~N~l~~l~~~ 213 (454)
T 1jl5_A 180 AGNNQLEELP-EL-QNLPFLTAIYADNNSLKKLPDL 213 (454)
T ss_dssp CCSSCCSSCC-CC-TTCTTCCEEECCSSCCSSCCCC
T ss_pred CcCCcCCcCc-cc-cCCCCCCEEECCCCcCCcCCCC
Confidence 8888777777 46 7777777777777766555543
No 134
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.61 E-value=2.7e-08 Score=88.21 Aligned_cols=114 Identities=13% Similarity=0.113 Sum_probs=90.2
Q ss_pred CCEEEEEEecCCCc------ccc-cCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCcc-----Cch
Q 048591 162 KNVKRINVFYKQSD------FVH-FVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQ-----YPS 229 (286)
Q Consensus 162 ~~~r~l~l~~~~~~------~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-----lp~ 229 (286)
..++.+.+..+... ... .+..+++|+.|.+.++.........++..+..+++|+.|+|++|.+.. +|.
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 266 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence 46788888888754 222 455889999999999987310001567788999999999999999874 466
Q ss_pred hh--ccccccceeeeccccccc-----cchhHhhCCCCccEEecCCCCccccc
Q 048591 230 GI--ENLFLLRYLKLNIPSLKI-----LPSSLLSNLLNLYTLDMPFSYIDHTA 275 (286)
Q Consensus 230 ~i--~~L~~L~~L~L~~~~i~~-----LP~~i~~~L~~L~~L~l~~~~l~~lP 275 (286)
.+ +.+++|++|+|++|.+.. +|..++.++++|++|++++|.+...+
T Consensus 267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 66 449999999999999987 99988566999999999999986544
No 135
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.57 E-value=7.4e-08 Score=84.36 Aligned_cols=120 Identities=13% Similarity=-0.046 Sum_probs=66.2
Q ss_pred CCCEEEEEEecCCCccccc--CCCCCCeeEEEEecCCCCCCCCchhhhhhcCCC-ceEEEEeeCCCCccCchhhcccccc
Q 048591 161 KKNVKRINVFYKQSDFVHF--VDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLE-FLRVLDLGSLVLIQYPSGIENLFLL 237 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~-~Lr~L~l~~~~l~~lp~~i~~L~~L 237 (286)
..+++.+.+..+....... .....++..+.+.++..... ..+..|..+. .++.|++++|.++.+|..+....+|
T Consensus 103 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~---l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L 179 (350)
T 4ay9_X 103 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT---IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQL 179 (350)
T ss_dssp CTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE---ECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEE
T ss_pred ccccccccccccccccCCchhhcccchhhhhhhcccccccc---ccccchhhcchhhhhhccccccccCCChhhccccch
Confidence 3456666666655332111 11334455555544322110 1222333333 4667777777777777666666677
Q ss_pred ceeeecc-ccccccchhHhhCCCCccEEecCCCCccccchH-Hhhhhc
Q 048591 238 RYLKLNI-PSLKILPSSLLSNLLNLYTLDMPFSYIDHTADE-FTLHAR 283 (286)
Q Consensus 238 ~~L~L~~-~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~~-i~~L~~ 283 (286)
+.|++++ |.++.+|..+|+.+++|++|++++|++..+|.+ +.+|++
T Consensus 180 ~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~ 227 (350)
T 4ay9_X 180 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKK 227 (350)
T ss_dssp EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCE
T ss_pred hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchH
Confidence 7777764 457777765546777777777777777666653 334433
No 136
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.41 E-value=3.4e-07 Score=80.12 Aligned_cols=115 Identities=14% Similarity=0.064 Sum_probs=75.6
Q ss_pred CCCCEEEEEEecCCCc-ccc-cCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceE-EEEeeCCCCccCc-hhhcccc
Q 048591 160 SKKNVKRINVFYKQSD-FVH-FVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLR-VLDLGSLVLIQYP-SGIENLF 235 (286)
Q Consensus 160 ~~~~~r~l~l~~~~~~-~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr-~L~l~~~~l~~lp-~~i~~L~ 235 (286)
.+..++.+.+..+... ++. .+.++++|++|.+.+|..... ..+..|.+++.++ .+.+.+|.+..+| ..+..++
T Consensus 28 l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~---i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~ 104 (350)
T 4ay9_X 28 LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV---IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP 104 (350)
T ss_dssp CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCE---ECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCT
T ss_pred cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCc---cChhHhhcchhhhhhhcccCCcccccCchhhhhcc
Confidence 3456778888877754 332 345778888888888775431 2234566776655 4566667777664 5567788
Q ss_pred ccceeeeccccccccchhHhhCCCCccEEecCCC-CccccchH
Q 048591 236 LLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFS-YIDHTADE 277 (286)
Q Consensus 236 ~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~-~l~~lP~~ 277 (286)
+|++|++++|+++.+|...+....++.+|++.++ ++..+|..
T Consensus 105 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~ 147 (350)
T 4ay9_X 105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN 147 (350)
T ss_dssp TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTT
T ss_pred ccccccccccccccCCchhhcccchhhhhhhcccccccccccc
Confidence 8888888888888777654355667777777664 56666653
No 137
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.32 E-value=3.3e-07 Score=80.54 Aligned_cols=110 Identities=17% Similarity=0.073 Sum_probs=66.9
Q ss_pred CEEEEEEecCCCcc--cccCCC-----CCCeeEEEEecCCCCCCCCchhhhhhcCC-CceEEEEeeCCCCccCch-hhc-
Q 048591 163 NVKRINVFYKQSDF--VHFVDD-----DSHMHSLLYFTSKSDHLDPIDWGIICLML-EFLRVLDLGSLVLIQYPS-GIE- 232 (286)
Q Consensus 163 ~~r~l~l~~~~~~~--~~~~~~-----~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l-~~Lr~L~l~~~~l~~lp~-~i~- 232 (286)
.++.+.+..+.... +..+.. .++|++|.+.++.........+...+..+ ++|+.|++++|.++..+. .++
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 67777777665331 111112 26777777777776532211222334445 678888888887775543 332
Q ss_pred ---c-ccccceeeecccccc-----ccchhHhhCCC-CccEEecCCCCccc
Q 048591 233 ---N-LFLLRYLKLNIPSLK-----ILPSSLLSNLL-NLYTLDMPFSYIDH 273 (286)
Q Consensus 233 ---~-L~~L~~L~L~~~~i~-----~LP~~i~~~L~-~L~~L~l~~~~l~~ 273 (286)
. .++|++|++++|.+. .++..+ ..+. +|++|++++|++..
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l-~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQIL-AAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHH-HTSCTTCCEEECTTSCGGG
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHH-hcCCccccEeeecCCCCch
Confidence 2 257888888888776 566666 6665 88888888887743
No 138
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.23 E-value=4.7e-07 Score=79.55 Aligned_cols=119 Identities=13% Similarity=0.009 Sum_probs=86.0
Q ss_pred CCEEEEEEecCCCcc--cc----cCCCC-CCeeEEEEecCCCCCCCCchhhhhhcC-CCceEEEEeeCCCCc-----cCc
Q 048591 162 KNVKRINVFYKQSDF--VH----FVDDD-SHMHSLLYFTSKSDHLDPIDWGIICLM-LEFLRVLDLGSLVLI-----QYP 228 (286)
Q Consensus 162 ~~~r~l~l~~~~~~~--~~----~~~~~-~~Lr~L~l~~~~~~~~~~~~~~~~~~~-l~~Lr~L~l~~~~l~-----~lp 228 (286)
..++.+.+..+.... +. .+... ++|++|.+.++.........+...+.. .++|+.|++++|.+. .++
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 789999999887432 11 12234 799999999998865321123334555 369999999999987 455
Q ss_pred hhhcccc-ccceeeeccccccccch-----hHhhCC-CCccEEecCCCCccc-----cchHHhhh
Q 048591 229 SGIENLF-LLRYLKLNIPSLKILPS-----SLLSNL-LNLYTLDMPFSYIDH-----TADEFTLH 281 (286)
Q Consensus 229 ~~i~~L~-~L~~L~L~~~~i~~LP~-----~i~~~L-~~L~~L~l~~~~l~~-----lP~~i~~L 281 (286)
..+..+. +|++|++++|++...+. .+ ..+ ++|++|++++|.+.. +|..+..+
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l-~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~ 223 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFL-ASIPASVTSLDLSANLLGLKSYAELAYIFSSI 223 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH-HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHS
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHH-HhCCCCCCEEECCCCCCChhHHHHHHHHHhcC
Confidence 5566665 99999999999875543 33 555 599999999999866 77777664
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.23 E-value=2.8e-07 Score=83.32 Aligned_cols=88 Identities=20% Similarity=0.053 Sum_probs=49.3
Q ss_pred CCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccC-----chh-hccccccceeeeccccccc-----cc
Q 048591 183 DSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQY-----PSG-IENLFLLRYLKLNIPSLKI-----LP 251 (286)
Q Consensus 183 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~l-----p~~-i~~L~~L~~L~L~~~~i~~-----LP 251 (286)
.++|+.|.+.++.........++..+..+++|+.|++++|.+... +.. ...+++|++|++++|.+.. +|
T Consensus 198 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 277 (461)
T 1z7x_W 198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC 277 (461)
T ss_dssp CCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred CCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHH
Confidence 345666666665543211011344555666666666666665421 111 2245666777777666654 56
Q ss_pred hhHhhCCCCccEEecCCCCc
Q 048591 252 SSLLSNLLNLYTLDMPFSYI 271 (286)
Q Consensus 252 ~~i~~~L~~L~~L~l~~~~l 271 (286)
..+ .++++|++|++++|.+
T Consensus 278 ~~l-~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 278 RVL-RAKESLKELSLAGNEL 296 (461)
T ss_dssp HHH-HHCTTCCEEECTTCCC
T ss_pred HHH-hhCCCcceEECCCCCC
Confidence 666 6667777777777665
No 140
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.19 E-value=1.7e-06 Score=72.68 Aligned_cols=75 Identities=20% Similarity=0.071 Sum_probs=53.9
Q ss_pred cCCCceEEEEeeCCCCccCc---hhhccccccceeeeccccccccchhHhhCCC--CccEEecCCCCc-cccch------
Q 048591 209 LMLEFLRVLDLGSLVLIQYP---SGIENLFLLRYLKLNIPSLKILPSSLLSNLL--NLYTLDMPFSYI-DHTAD------ 276 (286)
Q Consensus 209 ~~l~~Lr~L~l~~~~l~~lp---~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~--~L~~L~l~~~~l-~~lP~------ 276 (286)
.+++.|+.|+|++|.++.++ ..++.+++|++|+|++|.|+.+ ..+ ..+. +|++|+|++|.+ ..+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l-~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-REL-DKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGG-GGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhh-hhcccCCcceEEccCCcCccccCcchhHHH
Confidence 56788888888888877544 5667888888888888888776 334 5555 888888888887 44552
Q ss_pred -HHhhhhccC
Q 048591 277 -EFTLHARNT 285 (286)
Q Consensus 277 -~i~~L~~~~ 285 (286)
-+..+++|+
T Consensus 245 ~il~~~P~L~ 254 (267)
T 3rw6_A 245 AIRERFPKLL 254 (267)
T ss_dssp HHHHHCTTCC
T ss_pred HHHHHCcccC
Confidence 255566554
No 141
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.14 E-value=8.2e-07 Score=80.21 Aligned_cols=111 Identities=14% Similarity=0.055 Sum_probs=83.0
Q ss_pred CCCEEEEEEecCCCcc---cccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCcc-Cchhhc-ccc
Q 048591 161 KKNVKRINVFYKQSDF---VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQ-YPSGIE-NLF 235 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~~---~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-lp~~i~-~L~ 235 (286)
+..++.+.+..+.... ...+..+++|++|.+.++.........++..+..+++|+.|++++|.+.. .+..+. .+.
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 3467888888776431 11133688999999999987531111346678889999999999999864 233333 355
Q ss_pred ----ccceeeecccccc-----ccchhHhhCCCCccEEecCCCCcc
Q 048591 236 ----LLRYLKLNIPSLK-----ILPSSLLSNLLNLYTLDMPFSYID 272 (286)
Q Consensus 236 ----~L~~L~L~~~~i~-----~LP~~i~~~L~~L~~L~l~~~~l~ 272 (286)
+|++|++++|.+. .+|..+ .++++|++|++++|.+.
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTL-RTLPTLQELHLSDNLLG 126 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHT-TSCTTCCEEECCSSBCH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHH-ccCCceeEEECCCCcCc
Confidence 6999999999987 578888 99999999999999884
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.04 E-value=1.9e-06 Score=76.11 Aligned_cols=109 Identities=10% Similarity=-0.005 Sum_probs=64.7
Q ss_pred CEEEEEEecCCCcc------cccC-CCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCc-----cCchh
Q 048591 163 NVKRINVFYKQSDF------VHFV-DDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-----QYPSG 230 (286)
Q Consensus 163 ~~r~l~l~~~~~~~------~~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp~~ 230 (286)
.++.+.+..+.... ...+ ...++|++|.+.+|.........+...+...++|+.|+|++|.+. .++..
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 46667766665321 1111 135667777777776532110123344566777777777777765 23445
Q ss_pred hccccccceeeecccccc-----ccchhHhhCCCCccEEecCCCCcc
Q 048591 231 IENLFLLRYLKLNIPSLK-----ILPSSLLSNLLNLYTLDMPFSYID 272 (286)
Q Consensus 231 i~~L~~L~~L~L~~~~i~-----~LP~~i~~~L~~L~~L~l~~~~l~ 272 (286)
+...++|++|+|++|.|. .++..+ ...++|++|+|++|.+.
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L-~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAA-REHPSLELLHLYFNELS 252 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHH-HHCSSCCEEECTTSSCC
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHH-HhCCCCCEEeccCCCCC
Confidence 556667777777777765 344555 66677777777777764
No 143
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.97 E-value=5.4e-06 Score=69.56 Aligned_cols=82 Identities=22% Similarity=0.183 Sum_probs=65.8
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhcccc--ccceeeecccccc-ccch------
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLF--LLRYLKLNIPSLK-ILPS------ 252 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~--~L~~L~L~~~~i~-~LP~------ 252 (286)
.+++|++|.+.+|...... .++..+..+++|+.|+|++|.++.+ ..++.+. +|++|+|++|.+. .+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~--~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLD--DMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HCTTCCEEECTTSCCCCCG--GGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCc--cchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 5789999999999997643 3456778999999999999999876 3466666 9999999999986 3552
Q ss_pred hHhhCCCCccEEec
Q 048591 253 SLLSNLLNLYTLDM 266 (286)
Q Consensus 253 ~i~~~L~~L~~L~l 266 (286)
.++..+++|+.||=
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 23388999999973
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.94 E-value=7.2e-06 Score=70.91 Aligned_cols=97 Identities=15% Similarity=-0.010 Sum_probs=80.4
Q ss_pred CCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc-hhhccccccc-eeeeccccccccchhHhhCCCC
Q 048591 183 DSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLR-YLKLNIPSLKILPSSLLSNLLN 260 (286)
Q Consensus 183 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~-~L~L~~~~i~~LP~~i~~~L~~ 260 (286)
+++|+++.+.++.... .....|..+.+|+.|++.++ ++.++ ..+..+.+|+ .+.+.+ +++.++...|..+.+
T Consensus 225 ~~~L~~l~L~~n~i~~----I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~ 298 (329)
T 3sb4_A 225 MPNLVSLDISKTNATT----IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDN 298 (329)
T ss_dssp CTTCCEEECTTBCCCE----ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTT
T ss_pred cCCCeEEECCCCCcce----ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCcc
Confidence 7899999998877654 55677999999999999987 77776 5578899999 999988 788898776699999
Q ss_pred ccEEecCCCCccccch-HHhhhhccC
Q 048591 261 LYTLDMPFSYIDHTAD-EFTLHARNT 285 (286)
Q Consensus 261 L~~L~l~~~~l~~lP~-~i~~L~~~~ 285 (286)
|+.+++.++++..++. .+.++++|+
T Consensus 299 L~~l~l~~n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 299 LRYVLATGDKITTLGDELFGNGVPSK 324 (329)
T ss_dssp EEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred CCEEEeCCCccCccchhhhcCCcchh
Confidence 9999999999988886 466666654
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.89 E-value=2.8e-06 Score=75.02 Aligned_cols=111 Identities=14% Similarity=0.029 Sum_probs=77.4
Q ss_pred CCEEEEEEecCCCcc--ccc-CCCCCCeeEEEEecCCCCCCCCchhhhhh-cCCCceEEEEeeCCCCcc-----Cchhhc
Q 048591 162 KNVKRINVFYKQSDF--VHF-VDDDSHMHSLLYFTSKSDHLDPIDWGIIC-LMLEFLRVLDLGSLVLIQ-----YPSGIE 232 (286)
Q Consensus 162 ~~~r~l~l~~~~~~~--~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~-~~l~~Lr~L~l~~~~l~~-----lp~~i~ 232 (286)
..++.+.+..+.... ... ...+++|+.|++.+|.........+...+ ...+.|+.|+|++|.+.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 467788888776431 111 11356899999999877531100122223 356789999999999863 555667
Q ss_pred cccccceeeecccccc-----ccchhHhhCCCCccEEecCCCCccc
Q 048591 233 NLFLLRYLKLNIPSLK-----ILPSSLLSNLLNLYTLDMPFSYIDH 273 (286)
Q Consensus 233 ~L~~L~~L~L~~~~i~-----~LP~~i~~~L~~L~~L~l~~~~l~~ 273 (286)
..++|++|+|++|.|. .++..+ ...++|++|+|++|.+..
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L-~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQL-DRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHG-GGCSCCCEEECCSSCCCH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHH-hcCCCcCeEECCCCCCCH
Confidence 7889999999999876 456667 788899999999998853
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.88 E-value=5.5e-06 Score=65.68 Aligned_cols=110 Identities=10% Similarity=0.110 Sum_probs=80.0
Q ss_pred CCEEEEEEecC-CCc------ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCcc-----Cch
Q 048591 162 KNVKRINVFYK-QSD------FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQ-----YPS 229 (286)
Q Consensus 162 ~~~r~l~l~~~-~~~------~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-----lp~ 229 (286)
..++.+.+..+ ... +...+...++|++|.+.++.........+...+...+.|+.|+|++|.+.. +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 45667788776 432 223344678899999999887532111345566777889999999999873 556
Q ss_pred hhccccccceeee--cccccc-----ccchhHhhCCCCccEEecCCCCcc
Q 048591 230 GIENLFLLRYLKL--NIPSLK-----ILPSSLLSNLLNLYTLDMPFSYID 272 (286)
Q Consensus 230 ~i~~L~~L~~L~L--~~~~i~-----~LP~~i~~~L~~L~~L~l~~~~l~ 272 (286)
.+...++|++|+| ++|.|. .+...+ ...++|++|++++|.+.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L-~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANML-EKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHH-HHCSSCCEEECCCSSHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHH-HhCCCcCEEeccCCCCC
Confidence 6777788999999 778775 366666 77889999999999874
No 147
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.83 E-value=3.3e-06 Score=78.70 Aligned_cols=75 Identities=12% Similarity=-0.006 Sum_probs=34.8
Q ss_pred cCCCceEEEEeeCCCCcc-----Cchhhccccccceeeecccccc-----ccchhHhhCCCCccEEecCCCCccccchHH
Q 048591 209 LMLEFLRVLDLGSLVLIQ-----YPSGIENLFLLRYLKLNIPSLK-----ILPSSLLSNLLNLYTLDMPFSYIDHTADEF 278 (286)
Q Consensus 209 ~~l~~Lr~L~l~~~~l~~-----lp~~i~~L~~L~~L~L~~~~i~-----~LP~~i~~~L~~L~~L~l~~~~l~~lP~~i 278 (286)
..+++|+.|++++|.+.. ++.....+++|++|++++|.+. .++..+ .++++|++|++++|.+..+|..+
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~l~~~~ 239 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA-RNCRSLVSVKVGDFEILELVGFF 239 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH-HHCTTCCEEECSSCBGGGGHHHH
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH-hhCCCCcEEeccCccHHHHHHHH
Confidence 344555555555554331 2222334445555555555443 333333 44555555555555554455444
Q ss_pred hhhhcc
Q 048591 279 TLHARN 284 (286)
Q Consensus 279 ~~L~~~ 284 (286)
+++++|
T Consensus 240 ~~~~~L 245 (592)
T 3ogk_B 240 KAAANL 245 (592)
T ss_dssp HHCTTC
T ss_pred hhhhHH
Confidence 444443
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.78 E-value=6.4e-06 Score=65.28 Aligned_cols=92 Identities=8% Similarity=-0.005 Sum_probs=71.2
Q ss_pred CCCCCCeeEEEEecC-CCCCCCCchhhhhhcCCCceEEEEeeCCCCc-----cCchhhccccccceeeecccccc-----
Q 048591 180 VDDDSHMHSLLYFTS-KSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-----QYPSGIENLFLLRYLKLNIPSLK----- 248 (286)
Q Consensus 180 ~~~~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp~~i~~L~~L~~L~L~~~~i~----- 248 (286)
+...++|++|.+.++ .........+...+...+.|+.|+|++|.+. .+...+...++|++|+|++|.|.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 347889999999988 6643111134566778899999999999986 24455666688999999999886
Q ss_pred ccchhHhhCCCCccEEec--CCCCcc
Q 048591 249 ILPSSLLSNLLNLYTLDM--PFSYID 272 (286)
Q Consensus 249 ~LP~~i~~~L~~L~~L~l--~~~~l~ 272 (286)
.+...+ ...++|++|++ ++|.+.
T Consensus 112 ~l~~~L-~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 112 ALVEAL-QSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHGG-GGCSSCCEEECCCCSSCCC
T ss_pred HHHHHH-HhCCCceEEEecCCCCCCC
Confidence 367777 88899999999 888874
No 149
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.73 E-value=3e-05 Score=72.19 Aligned_cols=103 Identities=10% Similarity=0.134 Sum_probs=60.0
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeecc-----------------
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNI----------------- 244 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~----------------- 244 (286)
.+++|++|.+.++.........++..+..+++|+.|++++|.+..+|..++.+++|++|++++
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 456677776666655422111344556667777777777777666666666666666666642
Q ss_pred ----------ccccccchhHhhCCCCccEEecCCCCcc--ccchHHhhhhccC
Q 048591 245 ----------PSLKILPSSLLSNLLNLYTLDMPFSYID--HTADEFTLHARNT 285 (286)
Q Consensus 245 ----------~~i~~LP~~i~~~L~~L~~L~l~~~~l~--~lP~~i~~L~~~~ 285 (286)
+....+|..+ ..+++|++|++++|.+. .++..+.++++|+
T Consensus 270 ~~L~~L~l~~~~~~~l~~~~-~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 270 RKLCRLGLSYMGPNEMPILF-PFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp TTCCEEEETTCCTTTGGGGG-GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred ccccccCccccchhHHHHHH-hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 2233455555 66777777777777652 2333345555543
No 150
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.69 E-value=7.4e-06 Score=76.28 Aligned_cols=119 Identities=13% Similarity=0.072 Sum_probs=57.9
Q ss_pred CEEEEEEecCCCc--ccccCC-CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCcc-----Cchhhccc
Q 048591 163 NVKRINVFYKQSD--FVHFVD-DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQ-----YPSGIENL 234 (286)
Q Consensus 163 ~~r~l~l~~~~~~--~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~-----lp~~i~~L 234 (286)
.++++.+..+... .+..+. .+++|++|.+.++...... .++....++++|++|++++|.++. ++.-...+
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~--~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTD--GLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHH--HHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHH--HHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 4555666554422 111111 3566666666665321100 133444566666666666666442 22222244
Q ss_pred cccceeeecccc--c--cccchhHhhCCCCccEEecCCC-CccccchHHhhhhcc
Q 048591 235 FLLRYLKLNIPS--L--KILPSSLLSNLLNLYTLDMPFS-YIDHTADEFTLHARN 284 (286)
Q Consensus 235 ~~L~~L~L~~~~--i--~~LP~~i~~~L~~L~~L~l~~~-~l~~lP~~i~~L~~~ 284 (286)
++|++|++++|. + ..++.-+ .++++|++|++++| .+..+|..+.++++|
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~-~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L 237 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLV-TRCPNLKSLKLNRAVPLEKLATLLQRAPQL 237 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHH-HHCTTCCEEECCTTSCHHHHHHHHHHCTTC
T ss_pred CcCcEEEecccCCcCCHHHHHHHH-HhCCCCcEEecCCCCcHHHHHHHHhcCCcc
Confidence 566666666654 1 1222223 44566666666666 334455555554444
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.63 E-value=8.5e-05 Score=58.12 Aligned_cols=87 Identities=10% Similarity=-0.077 Sum_probs=62.4
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCC-Ccc-Cchhhccc----cccceeeecccc-cccc-chh
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLV-LIQ-YPSGIENL----FLLRYLKLNIPS-LKIL-PSS 253 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l~~-lp~~i~~L----~~L~~L~L~~~~-i~~L-P~~ 253 (286)
.-.+|+.|++.++.... .--..+..+++|+.|+|++|. ++. --..++.+ ++|++|+|++|. |+.- =..
T Consensus 59 ~~~~L~~LDLs~~~Itd----~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 59 DKYKIQAIDATDSCIMS----IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp TCCCEEEEEEESCCCCG----GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred CCceEeEEeCcCCCccH----HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence 34579999999988653 222446789999999999997 662 12345554 379999999985 6521 134
Q ss_pred HhhCCCCccEEecCCCC-ccc
Q 048591 254 LLSNLLNLYTLDMPFSY-IDH 273 (286)
Q Consensus 254 i~~~L~~L~~L~l~~~~-l~~ 273 (286)
+ .++++|++|++++|. ++.
T Consensus 135 L-~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 135 L-HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp G-GGCTTCCEEEEESCTTCCC
T ss_pred H-hcCCCCCEEECCCCCCCCc
Confidence 5 789999999999994 543
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.63 E-value=0.00012 Score=64.22 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=38.5
Q ss_pred CCCceEEEEeeCCCCcc-Cchhh---ccccccceeeeccccccc-----cchhHhhCCCCccEEecCCCCc
Q 048591 210 MLEFLRVLDLGSLVLIQ-YPSGI---ENLFLLRYLKLNIPSLKI-----LPSSLLSNLLNLYTLDMPFSYI 271 (286)
Q Consensus 210 ~l~~Lr~L~l~~~~l~~-lp~~i---~~L~~L~~L~L~~~~i~~-----LP~~i~~~L~~L~~L~l~~~~l 271 (286)
.+++|++|+|.+|.+.. .+..+ +.+++|++|+|+.|.+.. ++..+ .++++|+.|++++|.+
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L-~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHV-DKIKHLKFINMKYNYL 319 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTH-HHHTTCSEEECCSBBC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhc-ccCCcceEEECCCCcC
Confidence 46777777777776541 12222 246677777777776653 55555 6677777777777765
No 153
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.48 E-value=3.9e-05 Score=71.40 Aligned_cols=61 Identities=15% Similarity=0.018 Sum_probs=35.1
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCC-CccCchhhccccccceeeec
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLV-LIQYPSGIENLFLLRYLKLN 243 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-l~~lp~~i~~L~~L~~L~L~ 243 (286)
.+++|++|.+.++. ...+...+......+++|+.|++++|. +..+|..+..+++|++|+++
T Consensus 182 ~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 182 TYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp TCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred cCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence 56677777776665 111111233344556777777777763 44566666666666666643
No 154
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.34 E-value=0.00024 Score=52.78 Aligned_cols=53 Identities=26% Similarity=0.263 Sum_probs=36.6
Q ss_pred EEEeeCCCCc--cCchhhccccccceeeeccccccccchhHhhCCCCccEEecCCCC
Q 048591 216 VLDLGSLVLI--QYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSY 270 (286)
Q Consensus 216 ~L~l~~~~l~--~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~ 270 (286)
.++.+++.++ .+|..+. .+|++|+|++|+|+.+|...|..+.+|++|+|.+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 5666666666 6775432 357777777777777777665777777777777764
No 155
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.18 E-value=0.00053 Score=59.03 Aligned_cols=100 Identities=10% Similarity=0.004 Sum_probs=80.0
Q ss_pred CCCEEEEEEecCCCc-ccc-cCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceE-EEEeeCCCCccCc-hhhccccc
Q 048591 161 KKNVKRINVFYKQSD-FVH-FVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLR-VLDLGSLVLIQYP-SGIENLFL 236 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~-~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr-~L~l~~~~l~~lp-~~i~~L~~ 236 (286)
...++.+.+..+... ++. .+.++++|+++.+.++ ... .....|.++.+|+ .+++.+ .++.++ ..+..+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~----I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~ 298 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKT----IGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDN 298 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCE----ECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cce----ehHHHhhCChhccEEEEEcc-cceEEchhhhhCCcc
Confidence 456778888776533 332 3558999999999886 332 5567899999999 999998 777665 67889999
Q ss_pred cceeeeccccccccchhHhhCCCCccEEec
Q 048591 237 LRYLKLNIPSLKILPSSLLSNLLNLYTLDM 266 (286)
Q Consensus 237 L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l 266 (286)
|+.+++++++++.++...|.++++|+.+..
T Consensus 299 L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 299 LRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 999999999999999987799999998864
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.18 E-value=0.00026 Score=62.06 Aligned_cols=120 Identities=12% Similarity=-0.003 Sum_probs=78.1
Q ss_pred CCCCEEEEEEecCC-CcccccCCCCCCeeEEEEecCCCCCCCCchhhhhh--cCCCceEEEEeeCC--C------CccCc
Q 048591 160 SKKNVKRINVFYKQ-SDFVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIIC--LMLEFLRVLDLGSL--V------LIQYP 228 (286)
Q Consensus 160 ~~~~~r~l~l~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~--~~l~~Lr~L~l~~~--~------l~~lp 228 (286)
..+.++.|.+.++. ...+. + .+++|+.|.+..+.... .....+ ..+++|+.|+|+.+ . +..+.
T Consensus 170 ~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~----~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPD----SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp TCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCH----HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred cCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCCh----HHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 35678899998764 23332 3 58899999998776542 222233 37899999998632 1 22222
Q ss_pred hhh--ccccccceeeeccccccc-cchhHh--hCCCCccEEecCCCCccc-----cchHHhhhhccC
Q 048591 229 SGI--ENLFLLRYLKLNIPSLKI-LPSSLL--SNLLNLYTLDMPFSYIDH-----TADEFTLHARNT 285 (286)
Q Consensus 229 ~~i--~~L~~L~~L~L~~~~i~~-LP~~i~--~~L~~L~~L~l~~~~l~~-----lP~~i~~L~~~~ 285 (286)
..+ +.+++|++|+|++|.+.. .+..++ +.+++|++|+|+.|.+.. ++.++.++++|+
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~ 310 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCS
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcce
Confidence 222 357899999999988752 333441 257899999999998744 566656666554
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.32 E-value=0.0064 Score=53.95 Aligned_cols=112 Identities=4% Similarity=-0.057 Sum_probs=72.7
Q ss_pred CCEEEEEEecCCCccc-ccCCCCCCeeEEEEecCCCCCCCC-chhhhhhcCCCceEEEEeeCCCCccCc-hhhccccccc
Q 048591 162 KNVKRINVFYKQSDFV-HFVDDDSHMHSLLYFTSKSDHLDP-IDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLR 238 (286)
Q Consensus 162 ~~~r~l~l~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~-~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~ 238 (286)
..++.+.+..+-..+. ..+.++++|+++.+.++....... ......|..+++|+.+++.+ .++.++ ..+..+.+|+
T Consensus 248 ~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~ 326 (401)
T 4fdw_A 248 SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVT 326 (401)
T ss_dssp CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCC
T ss_pred CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCcc
Confidence 4556666644433332 234477888888887765531100 13446778888888888874 466665 4566778888
Q ss_pred eeeeccccccccchhHhhCCCCccEEecCCCCccccch
Q 048591 239 YLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTAD 276 (286)
Q Consensus 239 ~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~ 276 (286)
.+.+..+ ++.++...|.++ +|+.+++.+|.+..++.
T Consensus 327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~ 362 (401)
T 4fdw_A 327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFE 362 (401)
T ss_dssp EEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCC
T ss_pred EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccc
Confidence 8888544 777777665777 89999988886655543
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=95.95 E-value=0.012 Score=45.72 Aligned_cols=86 Identities=10% Similarity=-0.044 Sum_probs=60.3
Q ss_pred CCCEEEEEEecCCCcc--cccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCC----CceEEEEeeCCC-Ccc-Cchhhc
Q 048591 161 KKNVKRINVFYKQSDF--VHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLML----EFLRVLDLGSLV-LIQ-YPSGIE 232 (286)
Q Consensus 161 ~~~~r~l~l~~~~~~~--~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l----~~Lr~L~l~~~~-l~~-lp~~i~ 232 (286)
.-.++.+.+..+.... ...+..+++|++|.+.++..... .--..+..+ ++|+.|++++|. ++. =-..+.
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD---~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED---GCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH---HHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH---HHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 4468999999877432 23345899999999999975321 122334443 479999999997 762 113567
Q ss_pred cccccceeeecccc-ccc
Q 048591 233 NLFLLRYLKLNIPS-LKI 249 (286)
Q Consensus 233 ~L~~L~~L~L~~~~-i~~ 249 (286)
.+++|++|++++|. ++.
T Consensus 137 ~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GCTTCCEEEEESCTTCCC
T ss_pred cCCCCCEEECCCCCCCCc
Confidence 88999999999985 553
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.59 E-value=0.015 Score=51.50 Aligned_cols=78 Identities=15% Similarity=0.147 Sum_probs=51.1
Q ss_pred CeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCchhhccccccceeeeccccccccchhHhhCCCCccEE
Q 048591 185 HMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTL 264 (286)
Q Consensus 185 ~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L 264 (286)
+|+++.+.+ .... .....|..+++|+.+++.++.++.+|.......+|+.+.+.. .++.++...|.++.+|+.+
T Consensus 158 ~L~~i~lp~-~l~~----I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l 231 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQ----LKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTI 231 (401)
T ss_dssp CCCEEECCT-TCCE----ECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCE
T ss_pred CceEEEeCC-CccE----ehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEE
Confidence 466665543 2211 334567788888888888877777775544456777777763 3667766665777777777
Q ss_pred ecCC
Q 048591 265 DMPF 268 (286)
Q Consensus 265 ~l~~ 268 (286)
++..
T Consensus 232 ~l~~ 235 (401)
T 4fdw_A 232 EIPE 235 (401)
T ss_dssp ECCT
T ss_pred ecCC
Confidence 7755
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.26 E-value=0.031 Score=41.12 Aligned_cols=35 Identities=26% Similarity=0.210 Sum_probs=22.3
Q ss_pred ceEEEEeeCCCCccCchh-hccccccceeeeccccc
Q 048591 213 FLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSL 247 (286)
Q Consensus 213 ~Lr~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~i 247 (286)
+|+.|+|++|.|+.+|.. +..+.+|++|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 466677777777766643 45566677777776643
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.82 E-value=0.027 Score=44.63 Aligned_cols=108 Identities=12% Similarity=0.104 Sum_probs=65.7
Q ss_pred CEEEEEEecC-CCc------ccccCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCc-----cCchh
Q 048591 163 NVKRINVFYK-QSD------FVHFVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-----QYPSG 230 (286)
Q Consensus 163 ~~r~l~l~~~-~~~------~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp~~ 230 (286)
.++.+.+..+ ... +.+.+..-..|+.|.+.++.+....-..+...+..-+.|+.|+|++|.|. .+-..
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 4556666553 321 22334356788888888887753111144566667778888888888876 22233
Q ss_pred hccccccceeeecccc---cc-----ccchhHhhCCCCccEEecCCCCc
Q 048591 231 IENLFLLRYLKLNIPS---LK-----ILPSSLLSNLLNLYTLDMPFSYI 271 (286)
Q Consensus 231 i~~L~~L~~L~L~~~~---i~-----~LP~~i~~~L~~L~~L~l~~~~l 271 (286)
+..=+.|+.|+|+++. +. .+-..+ ..=+.|+.|+++.|.+
T Consensus 122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL-~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAI-EENESLLRVGISFASM 169 (197)
T ss_dssp TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHH-HHCSSCCEEECCCCCH
T ss_pred HhhCCceeEEECCCCcCcCcCHHHHHHHHHHH-HhCCCcCeEeccCCCc
Confidence 3344568888887653 22 344444 5567888888877754
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=92.05 E-value=0.11 Score=45.44 Aligned_cols=95 Identities=13% Similarity=0.124 Sum_probs=58.1
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc-hhhccccccceeeeccccccccchhHhhCCCC
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKILPSSLLSNLLN 260 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~ 260 (286)
.+.+|+.+.+..+-. . .....|.++.+|+.+++..+ ++.++ ..+.++.+|+.+.+..+ ++.++...|.++.+
T Consensus 295 ~~~~L~~i~l~~~i~-~----I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 295 GCSSLTEVKLLDSVK-F----IGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN 367 (394)
T ss_dssp TCTTCCEEEECTTCC-E----ECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred ccccccccccccccc-e----echhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence 455666665543311 1 23355777777888777543 55554 45667788888888665 77777766678888
Q ss_pred ccEEecCCCCccccchHHhhhhcc
Q 048591 261 LYTLDMPFSYIDHTADEFTLHARN 284 (286)
Q Consensus 261 L~~L~l~~~~l~~lP~~i~~L~~~ 284 (286)
|+.+++..+ +..+...+.+.++|
T Consensus 368 L~~i~lp~~-~~~~~~~F~~c~~L 390 (394)
T 4fs7_A 368 LKKVELPKR-LEQYRYDFEDTTKF 390 (394)
T ss_dssp CCEEEEEGG-GGGGGGGBCTTCEE
T ss_pred CCEEEECCC-CEEhhheecCCCCC
Confidence 888887653 33333444444444
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=91.94 E-value=0.33 Score=42.05 Aligned_cols=59 Identities=15% Similarity=0.128 Sum_probs=28.7
Q ss_pred hhcCCCceEEEEeeCCCCccCc-hhhccccccceeeeccccccccchhHhhCCCCccEEec
Q 048591 207 ICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDM 266 (286)
Q Consensus 207 ~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l 266 (286)
.|..+.+|+.+.+.++.++.++ ..+.++.+|+.+.+..+ ++.++..-|.++.+|+.+.+
T Consensus 281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 3445555555555555444443 23444555555555432 44454443355555555544
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=91.06 E-value=0.36 Score=41.78 Aligned_cols=116 Identities=10% Similarity=0.085 Sum_probs=75.5
Q ss_pred CCEEEEEEecCCCcccc-cCCCCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc-hhhccccccce
Q 048591 162 KNVKRINVFYKQSDFVH-FVDDDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLRY 239 (286)
Q Consensus 162 ~~~r~l~l~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~~ 239 (286)
..+..+.+..+...... .+..+.+|+.+.+..+-. . .-...|..+..|+.+.+..+ +..++ ..+..+.+|+.
T Consensus 217 ~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~v~-~----I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 217 KNLKKITITSGVTTLGDGAFYGMKALDEIAIPKNVT-S----IGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp SSCSEEECCTTCCEECTTTTTTCSSCCEEEECTTCC-E----ECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred cccceeeeccceeEEccccccCCccceEEEcCCCcc-E----eCccccceeehhcccccccc-ceecccccccccccccc
Confidence 34555555444322221 233678888888765422 1 33456788888998888653 55555 45677889999
Q ss_pred eeeccccccccchhHhhCCCCccEEecCCCCccccch-HHhhhhcc
Q 048591 240 LKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTAD-EFTLHARN 284 (286)
Q Consensus 240 L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~-~i~~L~~~ 284 (286)
+.+.++.++.++...|.++.+|+.+.+..+ +..++. .+.++++|
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 335 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKAL 335 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCC
Confidence 999988899998877789999999998643 444443 23344443
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=90.48 E-value=0.49 Score=41.33 Aligned_cols=63 Identities=16% Similarity=0.124 Sum_probs=43.4
Q ss_pred hhhhcCCCceEEEEeeCCCCccCc-hhhccccccceeeeccccccccchhHhhCCCCccEEecCCC
Q 048591 205 GIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFS 269 (286)
Q Consensus 205 ~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~ 269 (286)
...|.++.+|+.+++..+ ++.+. ..+..+.+|+.+.+..+ ++.++..-|.++.+|+.+++.++
T Consensus 304 ~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 304 ESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred ceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 355677777777777643 44444 34666778888888543 77777766678888888888765
No 166
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=90.33 E-value=0.65 Score=40.50 Aligned_cols=96 Identities=10% Similarity=0.074 Sum_probs=57.8
Q ss_pred CCCCeeEEEEecCCCCCCCCchhhhhhcCCCceEEEEeeCCCCccCc-hhhccccccceeeeccccccccchhHhhCCCC
Q 048591 182 DDSHMHSLLYFTSKSDHLDPIDWGIICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKILPSSLLSNLLN 260 (286)
Q Consensus 182 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~ 260 (286)
.+.+|+++.+...... .-...|.++..|+.+.+. +.++.++ ..+..+.+|+.+.+..+ ++.++..-|..+.+
T Consensus 263 ~c~~L~~i~lp~~~~~-----I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVS-----IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TCSSCCEEECCTTCCE-----ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ecccccEEecccccce-----ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 5667777766443321 233556677777777775 3355555 34556777887777643 66676665577788
Q ss_pred ccEEecCCCCccccch-HHhhhhccC
Q 048591 261 LYTLDMPFSYIDHTAD-EFTLHARNT 285 (286)
Q Consensus 261 L~~L~l~~~~l~~lP~-~i~~L~~~~ 285 (286)
|+.+.+..+ +..++. .+.++++|+
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALN 360 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCC
Confidence 888877543 555543 244555443
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.28 E-value=0.25 Score=39.07 Aligned_cols=87 Identities=13% Similarity=0.003 Sum_probs=62.5
Q ss_pred CCCCeeEEEEecC-CCCCCCCchhhhhhcCCCceEEEEeeCCCCc-----cCchhhccccccceeeecccccc-----cc
Q 048591 182 DDSHMHSLLYFTS-KSDHLDPIDWGIICLMLEFLRVLDLGSLVLI-----QYPSGIENLFLLRYLKLNIPSLK-----IL 250 (286)
Q Consensus 182 ~~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~l~-----~lp~~i~~L~~L~~L~L~~~~i~-----~L 250 (286)
.-+.|+.|.+.++ ......-..+...+..-..|+.|+|++|.+. .+-..+..=+.|+.|+|++|.|. .+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 5678999999875 4432111134567778889999999999986 33334445578999999999885 45
Q ss_pred chhHhhCCCCccEEecCCC
Q 048591 251 PSSLLSNLLNLYTLDMPFS 269 (286)
Q Consensus 251 P~~i~~~L~~L~~L~l~~~ 269 (286)
-+.+ ..=+.|+.|+|++|
T Consensus 119 a~aL-~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRST-LVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHT-TTTCCCSEEECCCC
T ss_pred HHHH-hhCCceeEEECCCC
Confidence 5555 66678999999865
No 168
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=87.58 E-value=1.2 Score=38.79 Aligned_cols=76 Identities=12% Similarity=0.050 Sum_probs=52.0
Q ss_pred hhhcCCCceEEEEeeCCCCccCc-hhhccccccceeeeccccccccchhHhhCCCCccEEecCCCCccccch-HHhhhhc
Q 048591 206 IICLMLEFLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKILPSSLLSNLLNLYTLDMPFSYIDHTAD-EFTLHAR 283 (286)
Q Consensus 206 ~~~~~l~~Lr~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~LP~~i~~~L~~L~~L~l~~~~l~~lP~-~i~~L~~ 283 (286)
..|..+.+|+.+.+..+ ++.++ ..+..+.+|+.+++..+ ++.++...|.++.+|+.+.+..+ +..++. .+.++++
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN 367 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence 45667778888887654 55554 45667889999998644 88887766688999999998765 555543 2334444
Q ss_pred c
Q 048591 284 N 284 (286)
Q Consensus 284 ~ 284 (286)
|
T Consensus 368 L 368 (394)
T 4fs7_A 368 L 368 (394)
T ss_dssp C
T ss_pred C
Confidence 3
No 169
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=65.82 E-value=8.7 Score=32.15 Aligned_cols=114 Identities=12% Similarity=-0.080 Sum_probs=59.6
Q ss_pred CCCccchhHHHHhhhhcCCCcCCccchhhhhhccccccCccccccchhh-HHhhhccCCChhhHHHHhhhccCCCCceee
Q 048591 2 ENGENVRLDIVPTGGPLRVTYQGWPFLILYHGSISLEQNIEEAIEGPMG-RLTVISCKLPFHLKLCFLYLSVFPAHLEIS 80 (286)
Q Consensus 2 ~kC~GlPLal~~ig~~L~~~~~~W~~~~~~l~~~~~~~~~~~~~~~i~~-~L~~Sy~~L~~~~k~cFl~~a~Fp~~~~i~ 80 (286)
+.|+|.|+++..++..+......| . ..+....... ..+.. +-.+.++ ++..+..+..+|+ + ..+
T Consensus 233 ~~tgG~P~~l~~~~~~~~~~~~~~-~---~~~~~~~~~~-----~~~~~~l~~l~~~--~~~~~~~l~~la~---g-~~~ 297 (350)
T 2qen_A 233 ELLDGIPGWLVVFGVEYLRNGDFG-R---AMKRTLEVAK-----GLIMGELEELRRR--SPRYVDILRAIAL---G-YNR 297 (350)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCHH-H---HHHHHHHHHH-----HHHHHHHHHHHHH--CHHHHHHHHHHHT---T-CCS
T ss_pred HHhCCCHHHHHHHHHHHhccccHh-H---HHHHHHHHHH-----HHHHHHHHHHHhC--ChhHHHHHHHHHh---C-CCC
Confidence 358999999999987643211111 1 1111100000 00111 1112222 6788999999997 2 234
Q ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHCCCccccccCCCCCEeeEEc-ChhHHHHH
Q 048591 81 TRQLYHLWIAEGFIPDNSEATAEKYLEQLINRGFVKANKRRTGGTIHTCSI-PCRCRPVL 139 (286)
Q Consensus 81 ~~~li~~w~a~g~i~~~~~~~~~~~l~~L~~~~li~~~~~~~~~~~~~~~m-hdlv~~l~ 139 (286)
...+.....+.. - .........+++.|++.+++.... ..|++ |.++++..
T Consensus 298 ~~~l~~~~~~~~-~-~~~~~~~~~~l~~L~~~gli~~~~-------~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 298 WSLIRDYLAVKG-T-KIPEPRLYALLENLKKMNWIVEED-------NTYKIADPVVATVL 348 (350)
T ss_dssp HHHHHHHHHHTT-C-CCCHHHHHHHHHHHHHTTSEEEET-------TEEEESSHHHHHHH
T ss_pred HHHHHHHHHHHh-C-CCCHHHHHHHHHHHHhCCCEEecC-------CEEEEecHHHHHHH
Confidence 455544432211 0 112455678999999999998652 12444 56666543
No 170
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=63.11 E-value=12 Score=31.22 Aligned_cols=111 Identities=11% Similarity=-0.095 Sum_probs=61.3
Q ss_pred CCCccchhHHHHhhhhcCC--CcCCccchhhhhhccccccCccccccchhhHHh-hhcc--CCChhhHHHHhhhccCCCC
Q 048591 2 ENGENVRLDIVPTGGPLRV--TYQGWPFLILYHGSISLEQNIEEAIEGPMGRLT-VISC--KLPFHLKLCFLYLSVFPAH 76 (286)
Q Consensus 2 ~kC~GlPLal~~ig~~L~~--~~~~W~~~~~~l~~~~~~~~~~~~~~~i~~~L~-~Sy~--~L~~~~k~cFl~~a~Fp~~ 76 (286)
+.|+|.|+++..++..+.. +...|-. +..+... ..+...+. +.++ .|++..+..+..+|+ +
T Consensus 237 ~~t~G~P~~l~~~~~~~~~~~~~~~~~~--~~~~~~~---------~~~~~~l~~~~~~~~~l~~~~~~~l~~la~---g 302 (357)
T 2fna_A 237 EKIGGIPGWLTYFGFIYLDNKNLDFAIN--QTLEYAK---------KLILKEFENFLHGREIARKRYLNIMRTLSK---C 302 (357)
T ss_dssp HHHCSCHHHHHHHHHHHHHHCCHHHHHH--HHHHHHH---------HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT---C
T ss_pred HHhCCCHHHHHHHHHHHccccchHHHHH--HHHHHHH---------HHHHHHHHHHhhccccccHHHHHHHHHHHc---C
Confidence 3589999999999887643 2212211 0111000 01111111 2222 678889999999998 2
Q ss_pred ceeeHHHHHHHHH-HccC-CCCCHHHHHHHHHHHHHHCCCccccccCCCCCEeeEE-cChhHHHH
Q 048591 77 LEISTRQLYHLWI-AEGF-IPDNSEATAEKYLEQLINRGFVKANKRRTGGTIHTCS-IPCRCRPV 138 (286)
Q Consensus 77 ~~i~~~~li~~w~-a~g~-i~~~~~~~~~~~l~~L~~~~li~~~~~~~~~~~~~~~-mhdlv~~l 138 (286)
. +...+..... ..|. + .......+++.|++.++|.... ..|+ .|.++++.
T Consensus 303 ~--~~~~l~~~~~~~~g~~~---~~~~~~~~L~~L~~~gli~~~~-------~~y~f~~~~~~~~ 355 (357)
T 2fna_A 303 G--KWSDVKRALELEEGIEI---SDSEIYNYLTQLTKHSWIIKEG-------EKYCPSEPLISLA 355 (357)
T ss_dssp B--CHHHHHHHHHHHHCSCC---CHHHHHHHHHHHHHTTSEEESS-------SCEEESSHHHHHH
T ss_pred C--CHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhCCCEEecC-------CEEEecCHHHHHh
Confidence 2 4444433221 1231 1 1345678899999999997643 1245 56777764
No 171
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=59.92 E-value=3.5 Score=35.73 Aligned_cols=69 Identities=16% Similarity=0.088 Sum_probs=43.3
Q ss_pred hHHhhhccCCChhhHHHHhhhccCC--CCceeeHHHHHHHHH--H---ccCCCCCHHHHHHHHHHHHHHCCCccccc
Q 048591 50 GRLTVISCKLPFHLKLCFLYLSVFP--AHLEISTRQLYHLWI--A---EGFIPDNSEATAEKYLEQLINRGFVKANK 119 (286)
Q Consensus 50 ~~L~~Sy~~L~~~~k~cFl~~a~Fp--~~~~i~~~~li~~w~--a---~g~i~~~~~~~~~~~l~~L~~~~li~~~~ 119 (286)
..+.-+++.||.+.+.++..+|.+. .+..+...++...+. + .|. ..........+++.|.+.++|....
T Consensus 297 ~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 297 SIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNV-KPRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp ---CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC-CCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred chHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHhCCCEEeec
Confidence 3455677899999999999888754 233455555554442 2 121 1112344667899999999997654
No 172
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=43.38 E-value=16 Score=17.87 Aligned_cols=18 Identities=11% Similarity=0.291 Sum_probs=14.5
Q ss_pred CCccchhHHHHhhhhcCC
Q 048591 3 NGENVRLDIVPTGGPLRV 20 (286)
Q Consensus 3 kC~GlPLal~~ig~~L~~ 20 (286)
|-.-+|||+.|.++.+..
T Consensus 7 krrklplavav~agv~~a 24 (28)
T 2vda_B 7 KRRKLPLAVAVAAGVMSA 24 (28)
T ss_dssp CCCCCTHHHHHHHHTTCC
T ss_pred ccccCchHHHHHHHHhHh
Confidence 456799999999988754
No 173
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=20.87 E-value=32 Score=19.02 Aligned_cols=9 Identities=22% Similarity=0.748 Sum_probs=6.4
Q ss_pred ccCCCCcee
Q 048591 71 SVFPAHLEI 79 (286)
Q Consensus 71 a~Fp~~~~i 79 (286)
++||+||+|
T Consensus 30 ~mLP~GYkI 38 (39)
T 3lqv_P 30 AMFPEGYKV 38 (39)
T ss_dssp HTCCSSEEE
T ss_pred HhCCCCccc
Confidence 567877765
Done!