Your job contains 1 sequence.
>048593
SSAIFVTRLLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNESGVVFFPVTFLCRTFLP
VKGEILHGVIHIAVCEQPFFSNEQQAKIRNGLVVQFLVTAVQWIDEGRNLKKKYLVFGRV
EGESLGPVSLSGWAGTDDINLKMLVHIMQV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 048593
(150 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2084573 - symbol:NRPD7 species:3702 "Arabidops... 122 4.1e-16 2
TAIR|locus:2130060 - symbol:NRPE7 species:3702 "Arabidops... 131 8.4e-16 2
TAIR|locus:2168514 - symbol:NRPB7 species:3702 "Arabidops... 101 0.00022 1
>TAIR|locus:2084573 [details] [associations]
symbol:NRPD7 species:3702 "Arabidopsis thaliana"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;ISS] [GO:0000418
"DNA-directed RNA polymerase IV complex" evidence=IPI]
InterPro:IPR005576 Pfam:PF03876 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006351 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003899 GO:GO:0000418
Gene3D:3.30.1490.120 SUPFAM:SSF88798 HOGENOM:HOG000241228 KO:K16253
ProtClustDB:CLSN2688679 EMBL:AY085637 IPI:IPI00522501
RefSeq:NP_566719.1 UniGene:At.37797 ProteinModelPortal:Q8LE42
STRING:Q8LE42 PaxDb:Q8LE42 PRIDE:Q8LE42 EnsemblPlants:AT3G22900.1
GeneID:821862 KEGG:ath:AT3G22900 TAIR:At3g22900 eggNOG:NOG327805
InParanoid:Q8LE42 OMA:RIQIGAR PhylomeDB:Q8LE42
Genevestigator:Q8LE42 Uniprot:Q8LE42
Length = 174
Score = 122 (48.0 bits), Expect = 4.1e-16, Sum P(2) = 4.1e-16
Identities = 30/67 (44%), Positives = 40/67 (59%)
Query: 6 VTRLLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVKGE 64
V RLL+ EKA KD Y ++ T L++IG G + E +G + FPV F F KGE
Sbjct: 29 VIRLLEAFSKEKATKDLGYLITPTILENIGE--GKIKEQTGEIQFPVVFNGICFKMFKGE 86
Query: 65 ILHGVIH 71
I+HGV+H
Sbjct: 87 IVHGVVH 93
Score = 92 (37.4 bits), Expect = 4.1e-16, Sum P(2) = 4.1e-16
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 76 EQPFFSNEQQAKIRNGLVVQFLVTAVQWIDEGRNLKKKYLVFGRVEGESLGP 127
E PFF N+ ++I+ G V+F+V +W R +K ++ ++G++LGP
Sbjct: 126 ENPFFMNQYMSRIQIGARVRFVVLDTEW----REAEKDFMALASIDGDNLGP 173
>TAIR|locus:2130060 [details] [associations]
symbol:NRPE7 species:3702 "Arabidopsis thaliana"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;ISS] [GO:0000419
"DNA-directed RNA polymerase V complex" evidence=IPI]
InterPro:IPR005576 Pfam:PF03876 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006351 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003899 GO:GO:0000419
Gene3D:3.30.1490.120 SUPFAM:SSF88798 EMBL:BT030624 IPI:IPI00536833
RefSeq:NP_193202.2 UniGene:At.49694 ProteinModelPortal:A6QRA1
STRING:A6QRA1 PaxDb:A6QRA1 PRIDE:A6QRA1 EnsemblPlants:AT4G14660.1
GeneID:827116 KEGG:ath:AT4G14660 TAIR:At4g14660 eggNOG:NOG264504
HOGENOM:HOG000241228 InParanoid:A6QRA1 KO:K16253 OMA:KVQLPWN
PhylomeDB:A6QRA1 ProtClustDB:CLSN2688679 Genevestigator:A6QRA1
Uniprot:A6QRA1
Length = 178
Score = 131 (51.2 bits), Expect = 8.4e-16, Sum P(2) = 8.4e-16
Identities = 32/70 (45%), Positives = 43/70 (61%)
Query: 3 AIFVTRLLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPV 61
AI V LL+ ++KA K+ Y+++VT L IG G + E +G V FPV F TF
Sbjct: 28 AILV-ELLEAFASKKATKELGYYVAVTTLDKIGE--GKIREHTGEVLFPVMFSGMTFKIF 84
Query: 62 KGEILHGVIH 71
KGEI+HGV+H
Sbjct: 85 KGEIIHGVVH 94
Score = 80 (33.2 bits), Expect = 8.4e-16, Sum P(2) = 8.4e-16
Identities = 15/54 (27%), Positives = 33/54 (61%)
Query: 76 EQPFFSNEQQAKIRNGLVVQFLVTAVQWIDEGRNLKKKYLVFGRVEGESLGPVS 129
E P F NE+ ++I+ V+ +V ++W++ +++++ +EG+ LGP+S
Sbjct: 127 ENPIFMNEKTSRIQVETTVRVVVIGIKWME----VEREFQALASLEGDYLGPLS 176
>TAIR|locus:2168514 [details] [associations]
symbol:NRPB7 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IPI] [GO:0000394 "RNA splicing, via
endonucleolytic cleavage and ligation" evidence=RCA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=RCA]
InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006351 GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AB016890
InterPro:IPR022967 SMART:SM00316 GO:GO:0003899 KO:K03015
GO:GO:0005665 EMBL:M90505 EMBL:BT005667 IPI:IPI00518175 PIR:A44457
RefSeq:NP_200726.1 UniGene:At.29242 ProteinModelPortal:P38421
SMR:P38421 STRING:P38421 PaxDb:P38421 PRIDE:P38421
EnsemblPlants:AT5G59180.1 GeneID:836036 KEGG:ath:AT5G59180
TAIR:At5g59180 eggNOG:COG1095 HOGENOM:HOG000158201
InParanoid:P38421 OMA:TRVDAND PhylomeDB:P38421
ProtClustDB:CLSN2686299 Genevestigator:P38421 GermOnline:AT5G59180
Gene3D:3.30.1490.120 SUPFAM:SSF88798 Uniprot:P38421
Length = 176
Score = 101 (40.6 bits), Expect = 0.00022, P = 0.00022
Identities = 28/85 (32%), Positives = 48/85 (56%)
Query: 6 VTRLLKGLINEKACKDQCYFL-SVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVKG 63
V++L+K + E C + F+ ++T + +IG+ G + + +G V FPV + C F P KG
Sbjct: 27 VSKLMKDV--EGTCSGRHGFVVAITGIDTIGK--GLIRDGTGFVTFPVKYQCVVFRPFKG 82
Query: 64 EILHGVIHIAVCEQPFFSNEQQAKI 88
EIL V+ + V + FF+ +I
Sbjct: 83 EILEAVVTL-VNKMGFFAEAGPVQI 106
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.141 0.422 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 150 150 0.00087 104 3 11 22 0.42 31
30 0.39 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 3
No. of states in DFA: 589 (63 KB)
Total size of DFA: 140 KB (2086 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 12.65u 0.11s 12.76t Elapsed: 00:00:00
Total cpu time: 12.65u 0.11s 12.76t Elapsed: 00:00:00
Start: Sat May 11 08:47:46 2013 End: Sat May 11 08:47:46 2013