BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048593
(150 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224107919|ref|XP_002314653.1| predicted protein [Populus trichocarpa]
gi|222863693|gb|EEF00824.1| predicted protein [Populus trichocarpa]
Length = 189
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 98/164 (59%), Gaps = 32/164 (19%)
Query: 6 VTRLLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNESGVVFFPVTFLCRTFLPVKGEI 65
VT LLK L++ KA KD YFL+VTNLKSIG+ VN+SG V F V F CRTF+P+KGEI
Sbjct: 30 VTHLLKDLLSMKASKDHGYFLAVTNLKSIGKGE-VVNKSGDVLFHVEFKCRTFMPMKGEI 88
Query: 66 LHGVIH-------IAVC---------------------EQPFFSNEQQAKIRNGLVVQFL 97
L GV+H + C E P F N++ A+I N ++V+F
Sbjct: 89 LQGVVHRTFRHGVLLRCGPVKYIFLSARKMPNYQYTSEENPVFLNDELARIENNVLVRFS 148
Query: 98 VTAVQWIDEGRNLKKKYLVFGRVEGESLGPVSLSGWAGTDDINL 141
V V+WI++ ++++ +++ + G+SLGP+SL G+D+++L
Sbjct: 149 VLDVRWIEKMWDMRRDFMMLASLVGDSLGPISL---CGSDELDL 189
>gi|449432628|ref|XP_004134101.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
gi|449432630|ref|XP_004134102.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
gi|449504102|ref|XP_004162253.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
gi|449504105|ref|XP_004162254.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
Length = 190
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 99/166 (59%), Gaps = 35/166 (21%)
Query: 6 VTRLLKGLINEKACKDQCYFLSVTNLKSIGRERGTV-NESGVVFFPVTFLCRTFLPVKGE 64
+T LL+ L+ EKA KD YFLSVT+L+SIG+ G V NES V FP+TF+CRTFLP +GE
Sbjct: 30 ITCLLENLLKEKANKDHGYFLSVTSLRSIGK--GIVKNESQCVSFPITFICRTFLPFEGE 87
Query: 65 ILHGVIH-------IAVC---------------------EQPFFSNEQQAKIRNGLVVQF 96
ILHGV+ + C E P FS+++ A I N +VV+F
Sbjct: 88 ILHGVVRHIFQRGLLLKCGPIKYVFLSARKMPTYQYVGGENPVFSSKEFATIGNDVVVRF 147
Query: 97 LVTAVQWIDEGRNLKKKYLVFGRVEG-ESLGPVSLSGWAGTDDINL 141
V V+WI++ +KK++++ +EG SLGP+SLS +D+ +L
Sbjct: 148 SVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPISLS---DSDEFDL 190
>gi|297804848|ref|XP_002870308.1| hypothetical protein ARALYDRAFT_493454 [Arabidopsis lyrata subsp.
lyrata]
gi|297316144|gb|EFH46567.1| hypothetical protein ARALYDRAFT_493454 [Arabidopsis lyrata subsp.
lyrata]
Length = 194
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 40/165 (24%)
Query: 8 RLLKGLINEKACKDQCYFLSVTNLKSIGRERGTV------NESGVVFFPVTFLCRTFLPV 61
RLLK LI+EKAC++ ++L +T LKSIG + +++ ++ FPV+F CRTFLP
Sbjct: 24 RLLKDLIHEKACREHGFYLGITALKSIGNNKNNNDENKDNHQAHLLTFPVSFTCRTFLPA 83
Query: 62 KGEILHGV-------------------------------IHIAVC--EQPFFSNEQQAKI 88
+G+IL G +H + E+P+F + +KI
Sbjct: 84 RGDILQGTVKKVLWNGAFIRSGPLRYAYLSFLKMPDYHYVHSPLLEDEKPYFQKDDLSKI 143
Query: 89 RNGLVVQFLVTAVQWIDEGRNLKKKYLVFGRVE-GESLGPVSLSG 132
G+VV+F V AV++ ++ + Y V +E +S GP+SL+G
Sbjct: 144 AVGVVVRFGVLAVRFKEKPHKRRNDYYVLATLERNDSFGPISLTG 188
>gi|30682881|ref|NP_193188.2| DNA-directed RNA polymerase II-like protein [Arabidopsis thaliana]
gi|30682886|ref|NP_849385.1| DNA-directed RNA polymerase II-like protein [Arabidopsis thaliana]
gi|334186527|ref|NP_001190729.1| DNA-directed RNA polymerase II-like protein [Arabidopsis thaliana]
gi|38603938|gb|AAR24714.1| At4g14520 [Arabidopsis thaliana]
gi|44681416|gb|AAS47648.1| At4g14520 [Arabidopsis thaliana]
gi|110741153|dbj|BAE98669.1| hypothetical protein [Arabidopsis thaliana]
gi|332658054|gb|AEE83454.1| DNA-directed RNA polymerase II-like protein [Arabidopsis thaliana]
gi|332658055|gb|AEE83455.1| DNA-directed RNA polymerase II-like protein [Arabidopsis thaliana]
gi|332658056|gb|AEE83456.1| DNA-directed RNA polymerase II-like protein [Arabidopsis thaliana]
Length = 200
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 40/165 (24%)
Query: 8 RLLKGLINEKACKDQCYFLSVTNLKSIGRERGTV------NESGVVFFPVTFLCRTFLPV 61
RLL+ LI+EKAC++ ++L +T LKSIG + +++ ++ FPV+F CRTFLP
Sbjct: 30 RLLQDLIHEKACREHGFYLGITALKSIGNNKNNNIDNENNHQAKILTFPVSFTCRTFLPA 89
Query: 62 KGEILHGVIH---------------------------------IAVCEQPFFSNEQQAKI 88
+G+IL G + ++ E+P F + +KI
Sbjct: 90 RGDILQGTVKKVLWNGAFIRSGPLRYAYLSLLKMPHYHYVHSPLSEDEKPHFQKDDLSKI 149
Query: 89 RNGLVVQFLVTAVQWIDEGRNLKKKYLVFGRVEGE-SLGPVSLSG 132
G+VV+F V AV++ + + Y V +EG S GP+SL+G
Sbjct: 150 AVGVVVRFQVLAVRFKERPHKRRNDYYVLATLEGNGSFGPISLTG 194
>gi|2244808|emb|CAB10231.1| hypothetical protein [Arabidopsis thaliana]
gi|7268158|emb|CAB78494.1| hypothetical protein [Arabidopsis thaliana]
Length = 194
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 40/165 (24%)
Query: 8 RLLKGLINEKACKDQCYFLSVTNLKSIGRERGTV------NESGVVFFPVTFLCRTFLPV 61
RLL+ LI+EKAC++ ++L +T LKSIG + +++ ++ FPV+F CRTFLP
Sbjct: 24 RLLQDLIHEKACREHGFYLGITALKSIGNNKNNNIDNENNHQAKILTFPVSFTCRTFLPA 83
Query: 62 KGEILHGVIH---------------------------------IAVCEQPFFSNEQQAKI 88
+G+IL G + ++ E+P F + +KI
Sbjct: 84 RGDILQGTVKKVLWNGAFIRSGPLRYAYLSLLKMPHYHYVHSPLSEDEKPHFQKDDLSKI 143
Query: 89 RNGLVVQFLVTAVQWIDEGRNLKKKYLVFGRVEGE-SLGPVSLSG 132
G+VV+F V AV++ + + Y V +EG S GP+SL+G
Sbjct: 144 AVGVVVRFQVLAVRFKERPHKRRNDYYVLATLEGNGSFGPISLTG 188
>gi|297737162|emb|CBI26363.3| unnamed protein product [Vitis vinifera]
Length = 242
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 75/152 (49%), Gaps = 33/152 (21%)
Query: 6 VTRLLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNESGVVFFPVTFLCRTFLPVKGEI 65
+ RLL N+KA ++ YFL+VT L++IG E SG V FPV F C TF +GEI
Sbjct: 95 IIRLLDAFSNKKATQELGYFLAVTTLENIG-EGKVRQHSGDVLFPVVFSCVTFKLFRGEI 153
Query: 66 LHGVIH-------IAVC---------------------EQPFFSNEQQAKIRNGLVVQFL 97
L GV+H I C E P F NE+ +KI +VV+F+
Sbjct: 154 LDGVVHKVLKHGVILRCGPVENIYLSCQKMPDYRYVPGENPVFLNEKLSKIEKDVVVRFI 213
Query: 98 VTAVQWIDEGRNLKKKYLVFGRVEGESLGPVS 129
V +W++ R ++ +EG+ LGP+S
Sbjct: 214 VMGTKWLEAER----EFQALVSLEGDYLGPLS 241
>gi|225432916|ref|XP_002284221.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Vitis
vinifera]
gi|147822056|emb|CAN61549.1| hypothetical protein VITISV_043525 [Vitis vinifera]
Length = 177
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 74/152 (48%), Gaps = 33/152 (21%)
Query: 6 VTRLLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNESGVVFFPVTFLCRTFLPVKGEI 65
+ RLL N+KA ++ YFL+VT L++IG E SG V FPV F C TF +GEI
Sbjct: 30 IIRLLDAFSNKKATQELGYFLAVTTLENIG-EGKVRQHSGDVLFPVVFSCVTFKLFRGEI 88
Query: 66 LHGVIH-------IAVC---------------------EQPFFSNEQQAKIRNGLVVQFL 97
L GV+H I C E P F NE+ +KI +VV+F+
Sbjct: 89 LDGVVHKVLKHGVILRCGPVENIYLSCQKMPDYRYVPGENPVFLNEKLSKIEKDVVVRFI 148
Query: 98 VTAVQWIDEGRNLKKKYLVFGRVEGESLGPVS 129
V +W++ R + +EG+ LGP+S
Sbjct: 149 VMGTKWLEAEREFQ----ALVSLEGDYLGPLS 176
>gi|449465372|ref|XP_004150402.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
gi|449522228|ref|XP_004168129.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
Length = 175
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 74/152 (48%), Gaps = 34/152 (22%)
Query: 6 VTRLLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNESGVVFFPVTFLCRTFLPVKGEI 65
+ RLL +KA KD YFL+VT L++IG G V ++G V FPV F TF +GEI
Sbjct: 30 IIRLLDEFATKKATKDLGYFLAVTTLENIGE--GKVRQTGDVLFPVIFSGITFKLYRGEI 87
Query: 66 LHGVIHIAV-------C---------------------EQPFFSNEQQAKIRNGLVVQFL 97
L GV+H + C E P F N++ +KI +VV+F+
Sbjct: 88 LEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDYRYVPGENPVFLNDKLSKIEKDVVVRFI 147
Query: 98 VTAVQWIDEGRNLKKKYLVFGRVEGESLGPVS 129
V +W++ R + +EG+ LGPVS
Sbjct: 148 VIGTKWLEAEREFQ----ALVSLEGDYLGPVS 175
>gi|255563208|ref|XP_002522607.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
[Ricinus communis]
gi|223538083|gb|EEF39694.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
[Ricinus communis]
Length = 176
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 35/153 (22%)
Query: 6 VTRLLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVKGE 64
+ RLL+ ++KA KD Y+L+VT L+SIG G V E +G V FPV F TF +GE
Sbjct: 30 IIRLLEDFASKKATKDLGYYLAVTTLESIGE--GKVREHTGDVLFPVVFNGITFKIFRGE 87
Query: 65 ILHGVIHIAV-----------------C-----------EQPFFSNEQQAKIRNGLVVQF 96
IL GV+H + C E P F N++ +KI +VV+F
Sbjct: 88 ILEGVVHKVLKHGVFIRCGPIENIYLSCMKMPDYHYVPGENPVFLNDKTSKIEKDVVVRF 147
Query: 97 LVTAVQWIDEGRNLKKKYLVFGRVEGESLGPVS 129
+V +W++ R + +EG+ LGPVS
Sbjct: 148 IVIGTKWLEAEREFQ----ALVSLEGDYLGPVS 176
>gi|388498028|gb|AFK37080.1| unknown [Medicago truncatula]
Length = 180
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 66/150 (44%), Gaps = 33/150 (22%)
Query: 8 RLLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNESGVVFFPVTFLCRTFLPVKGEILH 67
RLL +KA KD YFL+VT L IG E +G V FPV F TF KGE+L
Sbjct: 32 RLLSDFAAKKATKDMGYFLAVTTLDKIG-EGKVRQHTGDVLFPVVFNAVTFKIFKGEVLE 90
Query: 68 GVIH----------------------------IAVCEQPFFSNEQQAKIRNGLVVQFLVT 99
GV+H + E P+F N++ KI + V+ +V
Sbjct: 91 GVVHKVLKHGVFMRIGPIENAYLSSSKMPGYVYVLGENPYFMNQKMPKIAKDVKVRVVVI 150
Query: 100 AVQWIDEGRNLKKKYLVFGRVEGESLGPVS 129
+W++ R + +EG+ LGP+S
Sbjct: 151 GTKWMEAEREFQ----ALVGLEGDYLGPIS 176
>gi|224102153|ref|XP_002312568.1| predicted protein [Populus trichocarpa]
gi|222852388|gb|EEE89935.1| predicted protein [Populus trichocarpa]
Length = 176
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 71/152 (46%), Gaps = 33/152 (21%)
Query: 6 VTRLLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNESGVVFFPVTFLCRTFLPVKGEI 65
V RLL + A KD Y+L+V+ L+SIG E +G V FPV F TF +GEI
Sbjct: 30 VVRLLDDFAKKGATKDLGYYLAVSTLESIG-EGKVRQHTGDVLFPVVFSGITFKIFRGEI 88
Query: 66 LHGVIHIAV-----------------C-----------EQPFFSNEQQAKIRNGLVVQFL 97
L G++H + C E P F N++ +KI +VV+F+
Sbjct: 89 LDGIVHKVLKHGVLLRCGPIENIYLSCMKMPDYRYVPGENPVFLNDKTSKIEKDVVVRFV 148
Query: 98 VTAVQWIDEGRNLKKKYLVFGRVEGESLGPVS 129
V +W++ R + +EG+ LGPVS
Sbjct: 149 VLGTKWLEAEREFQ----ALVSLEGDYLGPVS 176
>gi|118487294|gb|ABK95475.1| unknown [Populus trichocarpa]
Length = 176
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 70/149 (46%), Gaps = 33/149 (22%)
Query: 9 LLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNESGVVFFPVTFLCRTFLPVKGEILHG 68
LL ++A KD Y+L+V+ L+SIG E +G V FPV F TF KGEIL G
Sbjct: 33 LLADFAKKRATKDLGYYLAVSTLESIG-EGKVRQHTGDVLFPVVFSGITFKIFKGEILEG 91
Query: 69 VIHIAV-------C---------------------EQPFFSNEQQAKIRNGLVVQFLVTA 100
V+H + C E P F N++ +KI +VV+F+V
Sbjct: 92 VVHKVLKHGVLLRCGPIENIYLSSMKMLDYRYVPGENPVFLNDKTSKIEKDVVVRFVVLG 151
Query: 101 VQWIDEGRNLKKKYLVFGRVEGESLGPVS 129
+W++ R + +EG+ LGPVS
Sbjct: 152 TKWLEAEREFQ----ALVSLEGDYLGPVS 176
>gi|224107923|ref|XP_002314654.1| predicted protein [Populus trichocarpa]
gi|222863694|gb|EEF00825.1| predicted protein [Populus trichocarpa]
Length = 193
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 70/149 (46%), Gaps = 33/149 (22%)
Query: 9 LLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNESGVVFFPVTFLCRTFLPVKGEILHG 68
LL ++A KD Y+L+V+ L+SIG E +G V FPV F TF KGEIL G
Sbjct: 50 LLADFAKKRATKDLGYYLAVSTLESIG-EGKVRQHTGDVLFPVVFSGITFKIFKGEILEG 108
Query: 69 VIHIAV-------C---------------------EQPFFSNEQQAKIRNGLVVQFLVTA 100
V+H + C E P F N++ +KI +VV+F+V
Sbjct: 109 VVHKVLKHGVLLRCGPIENIYLSSMKMLDYRYVPGENPVFLNDKTSKIEKDVVVRFVVLG 168
Query: 101 VQWIDEGRNLKKKYLVFGRVEGESLGPVS 129
+W++ R + +EG+ LGPVS
Sbjct: 169 TKWLEAEREFQ----ALVSLEGDYLGPVS 193
>gi|18403570|ref|NP_566719.1| DNA-directed RNA polymerase II subunit G [Arabidopsis thaliana]
gi|21553765|gb|AAM62858.1| RNA polymerase II fifth largest subunit-like protein [Arabidopsis
thaliana]
gi|332643168|gb|AEE76689.1| DNA-directed RNA polymerase II subunit G [Arabidopsis thaliana]
Length = 174
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 35/151 (23%)
Query: 6 VTRLLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVKGE 64
V RLL+ EKA KD Y ++ T L++IG G + E +G + FPV F F KGE
Sbjct: 29 VIRLLEAFSKEKATKDLGYLITPTILENIGE--GKIKEQTGEIQFPVVFNGICFKMFKGE 86
Query: 65 ILHGVIH----------------------------IAVCEQPFFSNEQQAKIRNGLVVQF 96
I+HGV+H E PFF N+ ++I+ G V+F
Sbjct: 87 IVHGVVHKVHKTGVFLKSGPYEIIYLSHMKMPGYEFIPGENPFFMNQYMSRIQIGARVRF 146
Query: 97 LVTAVQWIDEGRNLKKKYLVFGRVEGESLGP 127
+V +W R +K ++ ++G++LGP
Sbjct: 147 VVLDTEW----REAEKDFMALASIDGDNLGP 173
>gi|11994719|dbj|BAB03035.1| RNA polymerase II fifth largest subunit-like protein [Arabidopsis
thaliana]
Length = 157
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 35/151 (23%)
Query: 6 VTRLLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVKGE 64
V RLL+ EKA KD Y ++ T L++IG G + E +G + FPV F F KGE
Sbjct: 12 VIRLLEAFSKEKATKDLGYLITPTILENIGE--GKIKEQTGEIQFPVVFNGICFKMFKGE 69
Query: 65 ILHGVIH----------------------------IAVCEQPFFSNEQQAKIRNGLVVQF 96
I+HGV+H E PFF N+ ++I+ G V+F
Sbjct: 70 IVHGVVHKVHKTGVFLKSGPYEIIYLSHMKMPGYEFIPGENPFFMNQYMSRIQIGARVRF 129
Query: 97 LVTAVQWIDEGRNLKKKYLVFGRVEGESLGP 127
+V +W R +K ++ ++G++LGP
Sbjct: 130 VVLDTEW----REAEKDFMALASIDGDNLGP 156
>gi|217074784|gb|ACJ85752.1| unknown [Medicago truncatula]
Length = 180
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 65/150 (43%), Gaps = 33/150 (22%)
Query: 8 RLLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNESGVVFFPVTFLCRTFLPVKGEILH 67
RLL +KA KD YFL+VT L IG E +G V FPV F TF KGE+L
Sbjct: 32 RLLSDFAAKKATKDMGYFLAVTTLDKIG-EGKVRQHTGDVLFPVVFNAVTFKIFKGEVLE 90
Query: 68 GVIH----------------------------IAVCEQPFFSNEQQAKIRNGLVVQFLVT 99
GV+H + E P+F N++ KI + + +V
Sbjct: 91 GVVHKVLKHGVFMRIGPIENAYLSSSKMPGYVYVLGENPYFMNQKMPKIAKDVKARVVVI 150
Query: 100 AVQWIDEGRNLKKKYLVFGRVEGESLGPVS 129
+W++ R + +EG+ LGP+S
Sbjct: 151 GTKWMEAEREFQ----ALVGLEGDYLGPIS 176
>gi|2244822|emb|CAB10245.1| RNA polymerase II fifth largest subunit like protein [Arabidopsis
thaliana]
gi|7268172|emb|CAB78508.1| RNA polymerase II fifth largest subunit like protein [Arabidopsis
thaliana]
Length = 161
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 36/156 (23%)
Query: 3 AIFVTRLLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPV 61
AI V LL+ ++KA K+ Y+++VT L IG G + E +G V FPV F TF
Sbjct: 11 AILV-ELLEAFASKKATKELGYYVAVTTLDKIGE--GKIREHTGEVLFPVMFSGMTFKIF 67
Query: 62 KGEILHGVIHIAV-------C---------------------EQPFFSNEQQAKIRNGLV 93
KGEI+HGV+H + C E P F NE+ ++I+
Sbjct: 68 KGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPDYKYIPGENPIFMNEKTSRIQVETT 127
Query: 94 VQFLVTAVQWIDEGRNLKKKYLVFGRVEGESLGPVS 129
V+ +V ++W++ +++++ +EG+ LGP+S
Sbjct: 128 VRVVVIGIKWME----VEREFQALASLEGDYLGPLS 159
>gi|42566796|ref|NP_193202.2| DNA-directed RNA polymerase II subunit G [Arabidopsis thaliana]
gi|149944323|gb|ABR46204.1| At4g14660 [Arabidopsis thaliana]
gi|332658072|gb|AEE83472.1| DNA-directed RNA polymerase II subunit G [Arabidopsis thaliana]
Length = 178
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 36/156 (23%)
Query: 3 AIFVTRLLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPV 61
AI V LL+ ++KA K+ Y+++VT L IG G + E +G V FPV F TF
Sbjct: 28 AILV-ELLEAFASKKATKELGYYVAVTTLDKIGE--GKIREHTGEVLFPVMFSGMTFKIF 84
Query: 62 KGEILHGVIHIAV-------C---------------------EQPFFSNEQQAKIRNGLV 93
KGEI+HGV+H + C E P F NE+ ++I+
Sbjct: 85 KGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPDYKYIPGENPIFMNEKTSRIQVETT 144
Query: 94 VQFLVTAVQWIDEGRNLKKKYLVFGRVEGESLGPVS 129
V+ +V ++W++ +++++ +EG+ LGP+S
Sbjct: 145 VRVVVIGIKWME----VEREFQALASLEGDYLGPLS 176
>gi|297800772|ref|XP_002868270.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
gi|297314106|gb|EFH44529.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
Length = 178
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 74/156 (47%), Gaps = 36/156 (23%)
Query: 3 AIFVTRLLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPV 61
AI V LL ++KA K+ Y+++VT L IG G + E +G V FPV F TF
Sbjct: 28 AILV-ELLDAFASKKATKELGYYVAVTTLDKIGE--GKIREHTGEVLFPVMFSGMTFKIF 84
Query: 62 KGEILHGVIHIAV-------C---------------------EQPFFSNEQQAKIRNGLV 93
KGEI+HGV+H + C E P F NE+ ++I+
Sbjct: 85 KGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPDYKYVPGENPIFMNEKTSRIQVETT 144
Query: 94 VQFLVTAVQWIDEGRNLKKKYLVFGRVEGESLGPVS 129
V+ +V ++W++ R + +EG+ LGP+S
Sbjct: 145 VRVVVIGIKWMEAEREFQ----ALASLEGDYLGPLS 176
>gi|115462207|ref|NP_001054703.1| Os05g0157100 [Oryza sativa Japonica Group]
gi|45267865|gb|AAS55764.1| putative RNA polymerase II [Oryza sativa Japonica Group]
gi|113578254|dbj|BAF16617.1| Os05g0157100 [Oryza sativa Japonica Group]
gi|125550915|gb|EAY96624.1| hypothetical protein OsI_18537 [Oryza sativa Indica Group]
gi|215692867|dbj|BAG88287.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222630264|gb|EEE62396.1| hypothetical protein OsJ_17187 [Oryza sativa Japonica Group]
Length = 175
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 34/151 (22%)
Query: 6 VTRLLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVKGE 64
+ RLL+ + N KA KD Y+++V+ LK+I G V E +G V FPVTF C T P+KGE
Sbjct: 31 IVRLLEDIANRKASKDHGYYIAVSELKAISE--GKVRELTGDVLFPVTFTCITQKPMKGE 88
Query: 65 IL---------HGV-IHIAVCEQPFFSNE-----------------QQAKIRNGLVVQFL 97
+L HG+ + E F S + + +K+ VV+F
Sbjct: 89 VLVGSVDKILKHGIFLKSGPIESIFLSEKTMSDFKYIGGENAVFMNEHSKLEKDTVVRFK 148
Query: 98 VTAVQWIDEGRNLKKKYLVFGRVEGESLGPV 128
V +W++ R ++ + + G+ LGP+
Sbjct: 149 VMGFRWMEADR----QFQLLATLAGDYLGPL 175
>gi|357441001|ref|XP_003590778.1| DNA-directed RNA polymerase II subunit RPB7 [Medicago truncatula]
gi|355479826|gb|AES61029.1| DNA-directed RNA polymerase II subunit RPB7 [Medicago truncatula]
Length = 173
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 33/145 (22%)
Query: 13 LINEKACKDQCYFLSVTNLKSIGRERGTVNESGVVFFPVTFLCRTFLPVKGEILHGVIH- 71
L+ ++A KD YFL+VT L IG E +G V FPV F TF KGE+L GV+H
Sbjct: 30 LMLQRATKDMGYFLAVTTLDKIG-EGKVRQHTGDVLFPVVFNAVTFKIFKGEVLEGVVHK 88
Query: 72 ---------------------------IAVCEQPFFSNEQQAKIRNGLVVQFLVTAVQWI 104
+ E P+F N++ KI + V+ +V +W+
Sbjct: 89 VLKHGVFMRIGPIENAYLSSSKMPGYVYVLGENPYFMNQKMPKIAKDVKVRVVVIGTKWM 148
Query: 105 DEGRNLKKKYLVFGRVEGESLGPVS 129
+ R + +EG+ LGP+S
Sbjct: 149 EAEREFQ----ALVGLEGDYLGPIS 169
>gi|351724841|ref|NP_001238607.1| uncharacterized protein LOC100527862 [Glycine max]
gi|255633396|gb|ACU17055.1| unknown [Glycine max]
Length = 180
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 68/152 (44%), Gaps = 33/152 (21%)
Query: 6 VTRLLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNESGVVFFPVTFLCRTFLPVKGEI 65
+ RLL +KA KD YFL+VT L+ IG E +G V FPV F TF KGEI
Sbjct: 30 IVRLLSDFAVKKATKDLGYFLAVTTLEKIG-EGKVRQHTGDVLFPVVFNVITFKFFKGEI 88
Query: 66 LHGVIHIAV-------C---------------------EQPFFSNEQQAKIRNGLVVQFL 97
L GV+H + C E F N++ +KI + V+F
Sbjct: 89 LEGVVHKVLKHGVFMRCGPIENVYLSNLKMPDYRYVPGENACFMNDKMSKIGKDVTVRFS 148
Query: 98 VTAVQWIDEGRNLKKKYLVFGRVEGESLGPVS 129
V +W++ R + +EG+ LGP+S
Sbjct: 149 VIGTKWMEAEREFQ----ALVSLEGDYLGPIS 176
>gi|388504534|gb|AFK40333.1| unknown [Lotus japonicus]
Length = 180
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 67/150 (44%), Gaps = 33/150 (22%)
Query: 8 RLLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNESGVVFFPVTFLCRTFLPVKGEILH 67
RLL ++A KD YF +VT L +G E +G V FPV F TF KGEIL
Sbjct: 32 RLLGDFAAKRATKDLGYFTAVTTLDKVG-EGKVRQHTGDVLFPVVFNGVTFKLFKGEILE 90
Query: 68 GVIHIAV-------C---------------------EQPFFSNEQQAKIRNGLVVQFLVT 99
GV+H + C E +F NE+ +KI + ++F+V
Sbjct: 91 GVVHKVLKHGVFLRCGPIEHVYLSNMKMADYRYFPGENAYFMNEKASKIAKDVTIRFVVI 150
Query: 100 AVQWIDEGRNLKKKYLVFGRVEGESLGPVS 129
+W++ R + +EG+ LGP++
Sbjct: 151 GTKWMEAEREFQ----ALVSLEGDYLGPIA 176
>gi|218196310|gb|EEC78737.1| hypothetical protein OsI_18944 [Oryza sativa Indica Group]
Length = 175
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 36/152 (23%)
Query: 6 VTRLLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVKGE 64
+ LL+ + N KA KD Y+++V+ LK+I G V E +G V FPVTF C T P KGE
Sbjct: 31 IVSLLEEIANRKASKDHGYYIAVSELKAISE--GKVRELTGDVLFPVTFTCITQKPTKGE 88
Query: 65 IL---------HGVI-------HIAVCEQ------------PFFSNEQQAKIRNGLVVQF 96
IL HGV I + E+ P F N+ +K+ V+F
Sbjct: 89 ILVGSVDKILKHGVFLKSGPIESIFLSEKTLSDYKYIGGENPMFMND-HSKLEKDTAVRF 147
Query: 97 LVTAVQWIDEGRNLKKKYLVFGRVEGESLGPV 128
V +W++ R ++ + + G+ LGP+
Sbjct: 148 KVMGFRWMEADR----QFQILATLAGDYLGPL 175
>gi|297831004|ref|XP_002883384.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
gi|297329224|gb|EFH59643.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
Length = 174
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 35/151 (23%)
Query: 6 VTRLLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVKGE 64
V RLL+ +KA KD Y ++ T L++IG G + E +G + FPV F F KGE
Sbjct: 29 VIRLLEAFGTKKATKDLGYLITPTILENIGE--GKIKEQTGEIQFPVVFNGICFKMFKGE 86
Query: 65 ILHGVI---------------------HIAVC-------EQPFFSNEQQAKIRNGLVVQF 96
++HGV+ H+ + E+P F N+ ++I+ G V+F
Sbjct: 87 VVHGVVQKVHKSGVFLRSGPYEIIYLSHVKMPGYEFIPGEKPIFMNQNMSRIQIGARVRF 146
Query: 97 LVTAVQWIDEGRNLKKKYLVFGRVEGESLGP 127
+V +W R +K ++ ++G++LGP
Sbjct: 147 IVLDTEW----REAEKDFMALASIDGDNLGP 173
>gi|357134424|ref|XP_003568817.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like isoform
1 [Brachypodium distachyon]
gi|357134426|ref|XP_003568818.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like isoform
2 [Brachypodium distachyon]
Length = 175
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 36/152 (23%)
Query: 6 VTRLLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVKGE 64
+ RLL+ + N KA K+ Y+++V LK I G V E +G V FPVTF C T P+KGE
Sbjct: 31 IVRLLEDVTNRKASKEHGYYIAVNELKEISE--GKVRELTGDVLFPVTFTCITLKPMKGE 88
Query: 65 IL---------HGVI-------HIAVCEQ------------PFFSNEQQAKIRNGLVVQF 96
IL HG+ +I + E+ P F + +K+ +V+F
Sbjct: 89 ILVGSVDKILKHGMFLKSGPIENIFLSEKTMNDYKYIGGENPMFMKD-HSKLEKDTIVRF 147
Query: 97 LVTAVQWIDEGRNLKKKYLVFGRVEGESLGPV 128
V +W++ R ++ + + G+ LGP+
Sbjct: 148 RVMGFRWMEGDR----QFQLLATLAGDFLGPL 175
>gi|357134557|ref|XP_003568883.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Brachypodium distachyon]
Length = 175
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 69/151 (45%), Gaps = 34/151 (22%)
Query: 6 VTRLLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVKGE 64
+ RLL+ + N KA K+ Y+++V LK I G V E +G V FPVTF C T P+KGE
Sbjct: 31 LVRLLEDIANRKASKEHGYYIAVNELKEISE--GKVRELTGDVLFPVTFTCITLKPMKGE 88
Query: 65 IL---------HGV-IHIAVCEQPFFSN-----------------EQQAKIRNGLVVQFL 97
IL HGV + E F S + +K+ V++F
Sbjct: 89 ILVGSVEKILKHGVFLKSGPIENVFLSEKTMNDYKYIGGENPMFMKDHSKLEKDTVLRFK 148
Query: 98 VTAVQWIDEGRNLKKKYLVFGRVEGESLGPV 128
+W++ R ++ + + G+ LGP+
Sbjct: 149 AMGFRWMEADR----QFQLLATLAGDFLGPL 175
>gi|242086985|ref|XP_002439325.1| hypothetical protein SORBIDRAFT_09g004460 [Sorghum bicolor]
gi|241944610|gb|EES17755.1| hypothetical protein SORBIDRAFT_09g004460 [Sorghum bicolor]
Length = 175
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 36/152 (23%)
Query: 6 VTRLLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVKGE 64
+ RLL+ + N +A K+ Y+++V+ LK+I G V E +G V FPV+F C T P+KGE
Sbjct: 31 IVRLLEDVTNRRASKEHGYYVAVSQLKAISE--GKVRELTGDVLFPVSFTCITLKPMKGE 88
Query: 65 IL---------HGV---------IHIAV----------CEQPFFSNEQQAKIRNGLVVQF 96
++ HGV I +A E F N+ +K+ V+F
Sbjct: 89 VMVGHVDRILKHGVFLKSGPVESIFLAEKSMSDYKYIGGENAMFMND-HSKLEKDTAVRF 147
Query: 97 LVTAVQWIDEGRNLKKKYLVFGRVEGESLGPV 128
V +W++ R ++ + + G+ LGP+
Sbjct: 148 KVLGFRWMEADR----QFQLLATIAGDFLGPL 175
>gi|326527317|dbj|BAK04600.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 175
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 36/152 (23%)
Query: 6 VTRLLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVKGE 64
+ RLL+ + N KA + Y+++V LK+I G V E +G V FPVTF C T P+KGE
Sbjct: 31 IVRLLEDITNRKASNEHGYYIAVNELKTISE--GKVRELTGDVLFPVTFTCITQRPMKGE 88
Query: 65 IL---------HGVI-------HIAVCEQ------------PFFSNEQQAKIRNGLVVQF 96
IL HGV I + E+ P F + +K+ V+F
Sbjct: 89 ILVGSVEKILKHGVFLKSGPIESIFLSEKSMSDYKYMGGENPMFMKD-HSKLERDTAVRF 147
Query: 97 LVTAVQWIDEGRNLKKKYLVFGRVEGESLGPV 128
V +W++ R ++ + + G+ LGP+
Sbjct: 148 KVMGFRWMEAER----QFQLLASLAGDFLGPL 175
>gi|57863806|gb|AAS98454.2| putative receptor kinase [Oryza sativa Japonica Group]
Length = 715
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 32/135 (23%)
Query: 6 VTRLLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVKGE 64
+ LL+ + N KA KD Y+++V+ LK+I G V E +G V FPVTF C T P KGE
Sbjct: 66 IVSLLEEIANRKASKDHGYYIAVSELKAI--SEGKVRELTGDVLFPVTFTCITQKPTKGE 123
Query: 65 IL---------HGVI-------HIAVCEQ------------PFFSNEQQAKIRNGLVVQF 96
IL HGV I + E+ P F N+ +K+ V+F
Sbjct: 124 ILVGSVDKILKHGVFLKSGPIESIFLSEKTLSDYKYIGGENPMFMND-HSKLEKDTAVRF 182
Query: 97 LVTAVQWIDEGRNLK 111
V +W++ R +
Sbjct: 183 KVMGFRWMEADRQFQ 197
>gi|222630667|gb|EEE62799.1| hypothetical protein OsJ_17602 [Oryza sativa Japonica Group]
Length = 796
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 32/135 (23%)
Query: 6 VTRLLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVKGE 64
+ LL+ + N KA KD Y+++V+ LK+I G V E +G V FPVTF C T P KGE
Sbjct: 31 IVSLLEEIANRKASKDHGYYIAVSELKAI--SEGKVRELTGDVLFPVTFTCITQKPTKGE 88
Query: 65 IL---------HGVI-------HIAVCEQ------------PFFSNEQQAKIRNGLVVQF 96
IL HGV I + E+ P F N+ +K+ V+F
Sbjct: 89 ILVGSVDKILKHGVFLKSGPIESIFLSEKTLSDYKYIGGENPMFMND-HSKLEKDTAVRF 147
Query: 97 LVTAVQWIDEGRNLK 111
V +W++ R +
Sbjct: 148 KVMGFRWMEADRQFQ 162
>gi|226493930|ref|NP_001150375.1| LOC100284005 [Zea mays]
gi|194705372|gb|ACF86770.1| unknown [Zea mays]
gi|195638760|gb|ACG38848.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Zea mays]
gi|195658229|gb|ACG48582.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Zea mays]
gi|413944600|gb|AFW77249.1| DNA-directed RNA polymerase II polypeptide isoform 1 [Zea mays]
gi|413944601|gb|AFW77250.1| DNA-directed RNA polymerase II polypeptide isoform 2 [Zea mays]
gi|413944602|gb|AFW77251.1| DNA-directed RNA polymerase II polypeptide isoform 3 [Zea mays]
Length = 175
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 36/152 (23%)
Query: 6 VTRLLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVKGE 64
+ RLL+ + N +A K+ Y+++V LK+I G V E +G V FPV+F C T P+KGE
Sbjct: 31 IVRLLEDVTNRRASKEHGYYIAVNQLKAISE--GKVRELTGDVLFPVSFTCITQKPMKGE 88
Query: 65 IL---------HGV---------IHIAV----------CEQPFFSNEQQAKIRNGLVVQF 96
++ HGV I +A E F N+ +K+ V+F
Sbjct: 89 VMVGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFMND-HSKLEKDTAVRF 147
Query: 97 LVTAVQWIDEGRNLKKKYLVFGRVEGESLGPV 128
V +W++ R ++ + + G+ LGP+
Sbjct: 148 KVLGFRWMEADR----QFQLLATIAGDFLGPL 175
>gi|115462713|ref|NP_001054956.1| Os05g0224700 [Oryza sativa Japonica Group]
gi|113578507|dbj|BAF16870.1| Os05g0224700 [Oryza sativa Japonica Group]
Length = 782
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 6 VTRLLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVKGE 64
+ LL+ + N KA KD Y+++V+ LK+I G V E +G V FPVTF C T P KGE
Sbjct: 31 IVSLLEEIANRKASKDHGYYIAVSELKAI--SEGKVRELTGDVLFPVTFTCITQKPTKGE 88
Query: 65 ILHGVI 70
IL G +
Sbjct: 89 ILVGSV 94
>gi|297796859|ref|XP_002866314.1| DNA-directed RNA polymerase II [Arabidopsis lyrata subsp. lyrata]
gi|297312149|gb|EFH42573.1| DNA-directed RNA polymerase II [Arabidopsis lyrata subsp. lyrata]
Length = 176
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 7/85 (8%)
Query: 6 VTRLLKGLINEKACKDQCYFL-SVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVKG 63
V++L+K + E C + F+ ++T ++SIG+ G + + +G V FPV + C F P KG
Sbjct: 27 VSKLMKDV--EGTCSGRHGFVVAITGIESIGK--GLIRDGTGFVTFPVKYQCVVFRPFKG 82
Query: 64 EILHGVIHIAVCEQPFFSNEQQAKI 88
EIL V+ + V + FF+ +I
Sbjct: 83 EILEAVVTL-VNKMGFFAEAGPVQI 106
>gi|255558950|ref|XP_002520498.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
[Ricinus communis]
gi|223540340|gb|EEF41911.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
[Ricinus communis]
Length = 176
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 7/85 (8%)
Query: 6 VTRLLKGLINEKACKDQCYFL-SVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVKG 63
V++L+K + E C + F+ ++T ++S+G+ G + + +G V FPV + C F P KG
Sbjct: 27 VSKLMKDV--EGTCSGRHGFVVAITGIESVGK--GLIRDGTGFVTFPVKYQCVVFRPFKG 82
Query: 64 EILHGVIHIAVCEQPFFSNEQQAKI 88
EIL V+ + V + FF+ +I
Sbjct: 83 EILEAVVTM-VNKMGFFAEAGPVQI 106
>gi|357476433|ref|XP_003608502.1| DNA-directed RNA polymerase II subunit RPB7 [Medicago truncatula]
gi|217071674|gb|ACJ84197.1| unknown [Medicago truncatula]
gi|355509557|gb|AES90699.1| DNA-directed RNA polymerase II subunit RPB7 [Medicago truncatula]
gi|388514911|gb|AFK45517.1| unknown [Medicago truncatula]
Length = 176
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 7/85 (8%)
Query: 6 VTRLLKGLINEKACKDQCYFL-SVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVKG 63
V++L+K + E C + F+ +VT +++IG+ G + + +G V FPV + C F P KG
Sbjct: 27 VSKLMKDV--EGTCSGRHGFVVAVTGIENIGK--GIIRDGTGFVTFPVKYQCVVFRPFKG 82
Query: 64 EILHGVIHIAVCEQPFFSNEQQAKI 88
EIL V+ + V + FF+ +I
Sbjct: 83 EILEAVVTM-VNKMGFFAEAGPVQI 106
>gi|351722267|ref|NP_001236982.1| DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
gi|356512183|ref|XP_003524800.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Glycine max]
gi|1173137|sp|P46279.1|RPB7_SOYBN RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7
gi|170052|gb|AAA34005.1| RNA polymerase II [Glycine max]
gi|255626843|gb|ACU13766.1| unknown [Glycine max]
Length = 176
Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 7/85 (8%)
Query: 6 VTRLLKGLINEKACKDQCYFL-SVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVKG 63
V++L+K + E C + F+ +VT +++IG+ G + + +G V FPV + C F P KG
Sbjct: 27 VSKLMKDV--EGTCSGRHGFVVAVTGIENIGK--GLIRDGTGFVTFPVKYQCVVFRPFKG 82
Query: 64 EILHGVIHIAVCEQPFFSNEQQAKI 88
EIL V+ + V + FF+ +I
Sbjct: 83 EILEAVVTM-VNKMGFFAEAGPVQI 106
>gi|226500588|ref|NP_001149597.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Zea mays]
gi|242056199|ref|XP_002457245.1| hypothetical protein SORBIDRAFT_03g003990 [Sorghum bicolor]
gi|242090461|ref|XP_002441063.1| hypothetical protein SORBIDRAFT_09g019690 [Sorghum bicolor]
gi|194708012|gb|ACF88090.1| unknown [Zea mays]
gi|195628342|gb|ACG36001.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Zea mays]
gi|241929220|gb|EES02365.1| hypothetical protein SORBIDRAFT_03g003990 [Sorghum bicolor]
gi|241946348|gb|EES19493.1| hypothetical protein SORBIDRAFT_09g019690 [Sorghum bicolor]
gi|413945277|gb|AFW77926.1| DNA-directed RNA polymerase II polypeptide [Zea mays]
Length = 177
Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 6 VTRLLKGLINEKACKDQCYFL-SVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVKG 63
V++L+K + E C + F+ ++T ++ IG+ G + E +G V FPV + C F P KG
Sbjct: 27 VSKLIKDV--EGTCSGRHGFVVAITGVEDIGK--GLIREGTGYVTFPVKYQCVVFRPFKG 82
Query: 64 EILHGVIHIAVCEQPFFSNEQQAKI 88
EIL V+ + V + FF+ +I
Sbjct: 83 EILEAVVTM-VNKMGFFAEAGPVQI 106
>gi|111140005|gb|ABH06364.1| RNA polymerase II [Sorbus aucuparia]
Length = 110
Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 7/85 (8%)
Query: 6 VTRLLKGLINEKACKDQCYFL-SVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVKG 63
V++L+K + E C Q F+ ++T +++IG+ G + + +G V FP+ + C F P KG
Sbjct: 23 VSKLMKDV--EGTCSGQHGFVVAITGIENIGK--GMIRDGTGFVSFPMKYQCVVFRPFKG 78
Query: 64 EILHGVIHIAVCEQPFFSNEQQAKI 88
EIL V+ + V + FF+ +I
Sbjct: 79 EILEAVVTM-VNKMGFFAEAGPVQI 102
>gi|302754896|ref|XP_002960872.1| hypothetical protein SELMODRAFT_75793 [Selaginella moellendorffii]
gi|302767440|ref|XP_002967140.1| hypothetical protein SELMODRAFT_87027 [Selaginella moellendorffii]
gi|300165131|gb|EFJ31739.1| hypothetical protein SELMODRAFT_87027 [Selaginella moellendorffii]
gi|300171811|gb|EFJ38411.1| hypothetical protein SELMODRAFT_75793 [Selaginella moellendorffii]
Length = 177
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 7/85 (8%)
Query: 8 RLLKGLIN--EKACKDQCYFL-SVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVKG 63
+L++ LI+ E C + F+ +VT + +IG+ G + + +G V FP+ + C F P KG
Sbjct: 25 KLVEKLIHDVEGTCSGRHGFVVAVTGVDTIGK--GLIRDGTGYVTFPIHYQCVVFRPFKG 82
Query: 64 EILHGVIHIAVCEQPFFSNEQQAKI 88
EIL GV+ + V + FF+ +I
Sbjct: 83 EILEGVVTL-VNKMGFFAEAGPVQI 106
>gi|326497319|dbj|BAK02244.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326505504|dbj|BAJ95423.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 177
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 6 VTRLLKGLINEKACKDQCYFL-SVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVKG 63
V +L+K + E C + F+ ++T ++ IG+ G + E +G V FPV + C F P KG
Sbjct: 27 VAKLMKDV--EGTCSGRHGFVVAITGVEDIGK--GLIREGTGFVTFPVKYQCVVFRPFKG 82
Query: 64 EILHGVIHIAVCEQPFFSNEQQAKI 88
EIL V+ + V + FF+ +I
Sbjct: 83 EILEAVVTM-VNKMGFFAEAGPVQI 106
>gi|357133761|ref|XP_003568492.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Brachypodium distachyon]
Length = 177
Score = 38.9 bits (89), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 6 VTRLLKGLINEKACKDQCYFL-SVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVKG 63
V +L+K + E C + F+ ++T ++ IG+ G + E +G V FPV + C F P KG
Sbjct: 27 VAKLMKDV--EGTCSGRHGFVVAITGVEDIGK--GLIREGTGFVTFPVKYQCVVFRPFKG 82
Query: 64 EILHGVIHIAVCEQPFFSNEQQAKI 88
EIL V+ + V + FF+ +I
Sbjct: 83 EILEAVVTM-VNKMGFFAEAGPVQI 106
>gi|224056563|ref|XP_002298912.1| predicted protein [Populus trichocarpa]
gi|222846170|gb|EEE83717.1| predicted protein [Populus trichocarpa]
Length = 176
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 7/85 (8%)
Query: 6 VTRLLKGLINEKACKDQCYFL-SVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVKG 63
V++L+K + E C + F+ ++T +++IG+ G + + +G V FPV + C F P KG
Sbjct: 27 VSKLMKDV--EGTCSGRHGFVVAITGIENIGK--GLIRDGTGFVTFPVKYQCVVFRPFKG 82
Query: 64 EILHGVIHIAVCEQPFFSNEQQAKI 88
EIL V+ + V + FF+ +I
Sbjct: 83 EILEAVVTM-VNKMGFFAEAGPVQI 106
>gi|449466050|ref|XP_004150740.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
gi|449518487|ref|XP_004166273.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
Length = 176
Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 7/85 (8%)
Query: 6 VTRLLKGLINEKACKDQCYFL-SVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVKG 63
V++L+K + E C + F+ ++T +++IG+ G + + +G V FPV + C F P KG
Sbjct: 27 VSKLMKDV--EGTCSGRHGFVVAITGIENIGK--GLIRDGTGFVTFPVKYQCVVFRPFKG 82
Query: 64 EILHGVIHIAVCEQPFFSNEQQAKI 88
EIL V+ + V + FF+ +I
Sbjct: 83 EILEAVVTM-VNKMGFFAEAGPVQI 106
>gi|159467891|ref|XP_001692125.1| DNA-directed RNA polymerase II, 19 kDa polypeptide [Chlamydomonas
reinhardtii]
gi|158278852|gb|EDP04615.1| DNA-directed RNA polymerase II, 19 kDa polypeptide [Chlamydomonas
reinhardtii]
Length = 176
Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 24 YFLSVTNLKSIGRERGTVNESGVVFFPVTFLCRTFLPVKGEILHGVIHIAVCEQPFFSNE 83
Y ++VT + IGR R ++SG F V++ C P KGE+L V+ +V + FF+
Sbjct: 44 YVVAVTKVDDIGRGRIRQDQSGYATFEVSYGCIVCRPYKGEVLDAVV-TSVNKMGFFA-- 100
Query: 84 QQAKIRNGLVVQFLV 98
QA V Q L+
Sbjct: 101 -QAGPLQLFVTQHLI 114
>gi|115463767|ref|NP_001055483.1| Os05g0400700 [Oryza sativa Japonica Group]
gi|50878367|gb|AAT85142.1| putative RNA polymerase II subunit 5 [Oryza sativa Japonica Group]
gi|113579034|dbj|BAF17397.1| Os05g0400700 [Oryza sativa Japonica Group]
gi|125552268|gb|EAY97977.1| hypothetical protein OsI_19896 [Oryza sativa Indica Group]
gi|215704281|dbj|BAG93121.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218196761|gb|EEC79188.1| hypothetical protein OsI_19893 [Oryza sativa Indica Group]
gi|222631528|gb|EEE63660.1| hypothetical protein OsJ_18478 [Oryza sativa Japonica Group]
Length = 177
Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 6 VTRLLKGLINEKACKDQCYFL-SVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVKG 63
V++L+K + E C + F+ ++T ++ +G+ G + E +G V FPV + C F P KG
Sbjct: 27 VSKLIKDV--EGTCSGRHGFVVAITGVEDVGK--GLIREGTGYVTFPVKYQCVVFRPFKG 82
Query: 64 EILHGVIHIAVCEQPFFSNEQQAKI 88
EIL V+ + V + FF+ +I
Sbjct: 83 EILEAVVTM-VNKMGFFAEAGPVQI 106
>gi|15237831|ref|NP_200726.1| DNA-directed RNA polymerase II subunit RPB7 [Arabidopsis thaliana]
gi|585917|sp|P38421.1|RPB7_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7
gi|166854|gb|AAA32861.1| RNA polymerase II [Arabidopsis thaliana]
gi|9759239|dbj|BAB09763.1| DNA-directed RNA polymerase II 19 kD polypeptide (RNA polymerase II
subunit 5) [Arabidopsis thaliana]
gi|26452908|dbj|BAC43532.1| putative RNA polymerase II [Arabidopsis thaliana]
gi|28973525|gb|AAO64087.1| putative RNA polymerase II [Arabidopsis thaliana]
gi|332009771|gb|AED97154.1| DNA-directed RNA polymerase II subunit RPB7 [Arabidopsis thaliana]
Length = 176
Score = 38.5 bits (88), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 6 VTRLLKGLINEKACKDQCYFL-SVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVKG 63
V++L+K + E C + F+ ++T + +IG+ G + + +G V FPV + C F P KG
Sbjct: 27 VSKLMKDV--EGTCSGRHGFVVAITGIDTIGK--GLIRDGTGFVTFPVKYQCVVFRPFKG 82
Query: 64 EILHGVIHIAVCEQPFFSNEQQAKI 88
EIL V+ + V + FF+ +I
Sbjct: 83 EILEAVVTL-VNKMGFFAEAGPVQI 106
>gi|326496519|dbj|BAJ94721.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 236
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 5 FVTRLLKGLINEKACKDQCYFL-SVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVK 62
V +L+K + E C + F+ ++T ++ IG+ G + E +G V FPV + C F P K
Sbjct: 85 LVAKLMKDV--EGTCSGRHGFVVAITGVEDIGK--GLIREGTGFVTFPVKYQCVVFRPFK 140
Query: 63 GEILHGVIHIAVCEQPFFSNEQQAKI 88
GEIL V+ + V + FF+ +I
Sbjct: 141 GEILEAVVTM-VNKMGFFAEAGPVQI 165
>gi|388502464|gb|AFK39298.1| unknown [Lotus japonicus]
Length = 176
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 6 VTRLLKGLINEKACKDQCYFL-SVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVKG 63
V +L+K + E C + F+ +VT ++++G+ G + + +G V FPV + C F P KG
Sbjct: 27 VAKLMKDV--EGTCSGRHGFVVAVTGIENVGK--GLIRDGTGFVTFPVKYQCVVFRPFKG 82
Query: 64 EILHGVIHIAVCEQPFFSNEQQAKI 88
EIL V+ + V + FF+ +I
Sbjct: 83 EILEAVVTM-VNKMGFFAEAGPVQI 106
>gi|168006688|ref|XP_001756041.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692971|gb|EDQ79326.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 190
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 6 VTRLLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVKGE 64
+ RLLK E+ ++ + ++VT L+ + G + +G V F VTF C F P++ E
Sbjct: 29 IRRLLKDFDAERCSEEHGFHVTVTTLEDVSP--GKIRSGTGSVIFWVTFKCIVFRPIRNE 86
Query: 65 ILHGVIHIAVCEQPFFS 81
IL + V E+ F +
Sbjct: 87 ILEAEV-TDVLERGFLA 102
>gi|225434800|ref|XP_002282298.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Vitis
vinifera]
gi|147841138|emb|CAN75204.1| hypothetical protein VITISV_042914 [Vitis vinifera]
gi|297745997|emb|CBI16053.3| unnamed protein product [Vitis vinifera]
Length = 176
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 6 VTRLLKGLINEKACKDQCYFL-SVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVKG 63
V +L+K + E C + F+ ++T ++++G+ G + + +G V FPV + C F P KG
Sbjct: 27 VAKLVKDV--EGTCSGRHGFVVAITGIENVGK--GLIRDGTGFVTFPVKYQCVVFRPFKG 82
Query: 64 EILHGVIHIAVCEQPFFSNEQQAKI 88
EIL V+ + V + FF+ +I
Sbjct: 83 EILEAVVTM-VNKMGFFAEAGPVQI 106
>gi|284043051|ref|YP_003393391.1| acyl-CoA dehydrogenase [Conexibacter woesei DSM 14684]
gi|283947272|gb|ADB50016.1| acyl-CoA dehydrogenase domain protein [Conexibacter woesei DSM
14684]
Length = 387
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 79 FFSNEQQAKIRNGLVVQFLVTAVQWIDEGRNLKKKYLVFGRVEGESLGPVSLSGWAGTD 137
F N + I NG+ F+VTAV+ EG + +LV R EG P+ GW +D
Sbjct: 165 FLVNGSKMFITNGVRADFVVTAVRTTPEGGHGGISFLVVDRGEGVEARPIEKLGWHASD 223
>gi|302837432|ref|XP_002950275.1| hypothetical protein VOLCADRAFT_74564 [Volvox carteri f.
nagariensis]
gi|300264280|gb|EFJ48476.1| hypothetical protein VOLCADRAFT_74564 [Volvox carteri f.
nagariensis]
Length = 176
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 24 YFLSVTNLKSIGRERGTVNESGVVFFPVTFLCRTFLPVKGEILHGVIHIAVCEQPFFSNE 83
Y ++VT + IGR R ++SG F VT+ C P K E+L V+ +V + FF+
Sbjct: 44 YVVAVTKVDDIGRGRIRQDQSGFATFDVTYGCIVCRPYKKEVLDAVV-TSVNKMGFFA-- 100
Query: 84 QQAKIRNGLVVQFLV 98
QA V Q L+
Sbjct: 101 -QAGPLQLFVTQHLI 114
>gi|352681821|ref|YP_004892345.1| DNA-directed RNA polymerase subunit E' [Thermoproteus tenax Kra 1]
gi|350274620|emb|CCC81265.1| DNA-directed RNA polymerase, subunit E' [Thermoproteus tenax Kra 1]
Length = 189
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 17 KACKDQCYFLSVTNLKSIGRERGTVNESGVVFFPVTFLCRTFLPVKGEILHGVIHIAVCE 76
K+ +D Y ++V + K + RE + G + F TF+P+ GE++HG++ A
Sbjct: 38 KSFRDLGYVVAVLDAK-VNREGVIIFGDGATYHKAIFHILTFMPLDGEVVHGIVESA--- 93
Query: 77 QPFFSNEQQAKIRNGLVVQFLVTAVQWIDE 106
E +R G V+ F + + +DE
Sbjct: 94 -----REVGVMVRIGPVLGF-INKIHLMDE 117
>gi|168056096|ref|XP_001780058.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668556|gb|EDQ55161.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 177
Score = 35.4 bits (80), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 8 RLLKGLIN--EKACKDQCYFL-SVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVKG 63
+L+ LI E C + F+ +VT +++IG G + + +G V FPV + C F P KG
Sbjct: 25 KLIAKLIQDVEGTCSGRHGFVVAVTAVETIGS--GLIRDGTGFVTFPVKYQCVVFRPFKG 82
Query: 64 EILHGVIHIAVCEQPFFSNEQQAKI 88
EIL V+ + V + FF+ +I
Sbjct: 83 EILESVVTM-VNKMGFFAEAGPVQI 106
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.141 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,221,644,247
Number of Sequences: 23463169
Number of extensions: 83295325
Number of successful extensions: 182310
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 182233
Number of HSP's gapped (non-prelim): 72
length of query: 150
length of database: 8,064,228,071
effective HSP length: 113
effective length of query: 37
effective length of database: 9,707,857,270
effective search space: 359190718990
effective search space used: 359190718990
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 71 (32.0 bits)