BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048593
(150 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2
SV=1
Length = 176
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 7/85 (8%)
Query: 6 VTRLLKGLINEKACKDQCYFL-SVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVKG 63
V++L+K + E C + F+ +VT +++IG+ G + + +G V FPV + C F P KG
Sbjct: 27 VSKLMKDV--EGTCSGRHGFVVAVTGIENIGK--GLIRDGTGFVTFPVKYQCVVFRPFKG 82
Query: 64 EILHGVIHIAVCEQPFFSNEQQAKI 88
EIL V+ + V + FF+ +I
Sbjct: 83 EILEAVVTM-VNKMGFFAEAGPVQI 106
>sp|P38421|RPB7_ARATH DNA-directed RNA polymerase II subunit RPB7 OS=Arabidopsis thaliana
GN=RPB19 PE=1 SV=1
Length = 176
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 6 VTRLLKGLINEKACKDQCYFL-SVTNLKSIGRERGTVNE-SGVVFFPVTFLCRTFLPVKG 63
V++L+K + E C + F+ ++T + +IG+ G + + +G V FPV + C F P KG
Sbjct: 27 VSKLMKDV--EGTCSGRHGFVVAITGIDTIGK--GLIRDGTGFVTFPVKYQCVVFRPFKG 82
Query: 64 EILHGVIHIAVCEQPFFSNEQQAKI 88
EIL V+ + V + FF+ +I
Sbjct: 83 EILEAVVTL-VNKMGFFAEAGPVQI 106
>sp|Q57840|RPOE1_METJA DNA-directed RNA polymerase subunit E' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoE1 PE=1 SV=1
Length = 187
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 20 KDQCYFLSVTNLKSIGRERGTVNESGVVFFPVTFLCRTFLPVKGEILHG 68
KD + LS+ ++K IG E V+ G + PV F ++P E++ G
Sbjct: 40 KDVGFVLSIVDVKDIG-EGKVVHGDGSAYHPVVFETLVYIPEMYELIEG 87
>sp|Q10300|YD46_SCHPO Uncharacterized protein C22H10.06c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC22H10.06c PE=4 SV=1
Length = 93
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 76 EQPFFSNEQQAKIRNGLVVQFLVTAVQWIDEGRNLKKKYLVFGRVEGESLGPV 128
E F +N +Q+ I+NGLVV + + + +GR+L+ +V LGPV
Sbjct: 46 EHKFMNNRKQSHIKNGLVVSYSILYP--VGKGRSLRSTGVVL------ILGPV 90
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.141 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,940,622
Number of Sequences: 539616
Number of extensions: 2001785
Number of successful extensions: 4439
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4437
Number of HSP's gapped (non-prelim): 9
length of query: 150
length of database: 191,569,459
effective HSP length: 107
effective length of query: 43
effective length of database: 133,830,547
effective search space: 5754713521
effective search space used: 5754713521
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)