Query 048593
Match_columns 150
No_of_seqs 112 out of 292
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 19:10:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048593.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048593hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ckz_B C25, DNA-directed RNA p 100.0 1.3E-35 4.4E-40 240.0 17.2 130 3-135 23-213 (218)
2 3ayh_B DNA-directed RNA polyme 100.0 2.6E-35 8.9E-40 235.1 16.4 129 3-134 23-203 (203)
3 4ayb_E DNA-directed RNA polyme 100.0 2.8E-32 9.6E-37 212.3 12.9 127 4-137 24-179 (180)
4 3h0g_G DNA-directed RNA polyme 100.0 4.7E-29 1.6E-33 194.1 12.7 118 4-128 25-172 (172)
5 1go3_E DNA-directed RNA polyme 99.9 4.8E-27 1.7E-31 183.5 12.9 126 4-135 24-178 (187)
6 2c35_B Human RPB7, DNA-directe 99.9 1.7E-24 6E-29 167.4 16.3 119 4-129 24-172 (172)
7 1y14_B B16, RPB7, DNA-directed 99.9 4.9E-24 1.7E-28 165.1 13.5 118 4-128 24-171 (171)
8 2b8k_G B16, DNA-directed RNA p 99.9 2.3E-23 7.9E-28 168.0 14.1 119 4-129 24-172 (215)
9 2rf4_A DNA-directed RNA polyme 99.8 1.9E-19 6.3E-24 144.7 12.2 107 4-121 60-213 (214)
10 2ja9_A Exosome complex exonucl 96.9 0.00074 2.5E-08 52.5 3.9 67 58-129 3-90 (175)
11 2ba0_A Archeal exosome RNA bin 96.2 0.01 3.5E-07 47.5 6.4 63 58-129 53-135 (229)
12 2z0s_A Probable exosome comple 95.8 0.016 5.5E-07 46.4 5.9 62 58-128 62-146 (235)
13 2je6_I RRP4, exosome complex R 95.4 0.049 1.7E-06 44.1 7.6 63 57-128 69-153 (251)
14 2nn6_H Exosome complex exonucl 94.8 0.02 6.8E-07 48.0 3.7 62 58-128 91-181 (308)
15 2nn6_I 3'-5' exoribonuclease C 94.8 0.061 2.1E-06 42.4 6.3 63 58-128 77-168 (209)
16 2khi_A 30S ribosomal protein S 94.5 0.027 9.2E-07 40.1 3.2 53 51-103 19-91 (115)
17 2cqo_A Nucleolar protein of 40 93.8 0.048 1.6E-06 39.3 3.5 52 52-103 12-83 (119)
18 2k52_A Uncharacterized protein 93.4 0.22 7.5E-06 32.9 5.9 45 59-103 2-61 (80)
19 2khj_A 30S ribosomal protein S 92.4 0.27 9.2E-06 34.3 5.5 46 58-103 27-91 (109)
20 2nn6_G Exosome complex exonucl 91.5 0.3 1E-05 40.5 5.6 64 58-128 123-207 (289)
21 1wi5_A RRP5 protein homolog; S 90.6 0.71 2.4E-05 32.6 6.3 62 59-128 18-100 (119)
22 2k4k_A GSP13, general stress p 90.4 0.57 2E-05 33.9 5.7 45 59-103 4-67 (130)
23 2eqs_A ATP-dependent RNA helic 89.4 0.71 2.4E-05 31.9 5.3 46 57-102 7-75 (103)
24 4aid_A Polyribonucleotide nucl 87.3 0.029 1E-06 52.0 -3.9 73 30-103 604-697 (726)
25 3m7n_A Putative uncharacterize 87.1 0.85 2.9E-05 34.7 4.9 43 57-100 53-124 (179)
26 3cdi_A Polynucleotide phosphor 87.0 0.12 4.1E-06 47.8 0.0 81 19-103 586-687 (723)
27 1kl9_A Eukaryotic translation 86.6 1.2 4E-05 34.4 5.4 44 60-103 13-77 (182)
28 2a19_A EIF-2- alpha, eukaryoti 83.6 2.1 7.1E-05 32.6 5.6 44 60-103 13-77 (175)
29 1luz_A Protein K3, protein K2; 81.9 1 3.4E-05 30.5 2.9 43 59-103 8-72 (88)
30 2bh8_A 1B11; transcription, mo 81.6 0.93 3.2E-05 31.5 2.7 45 34-79 28-78 (101)
31 3aev_A Translation initiation 76.4 4.5 0.00015 33.0 5.7 45 59-103 8-73 (275)
32 2asb_A Transcription elongatio 73.8 6.2 0.00021 32.1 5.8 47 58-104 3-69 (251)
33 1q8k_A Eukaryotic translation 69.6 7.6 0.00026 32.2 5.5 44 60-103 11-75 (308)
34 1k0r_A NUSA; two component arr 65.4 11 0.00038 32.2 5.8 46 58-103 126-191 (366)
35 1e3p_A Guanosine pentaphosphat 62.0 0.26 8.9E-06 45.8 -5.3 78 20-102 625-730 (757)
36 1hh2_P NUSA, N utilization sub 59.8 15 0.0005 31.1 5.5 45 59-103 131-187 (344)
37 3cw2_C Translation initiation 57.7 5.4 0.00018 32.2 2.4 44 59-102 8-72 (266)
38 3go5_A Multidomain protein wit 56.3 23 0.00079 28.8 6.0 42 62-103 152-205 (285)
39 3psi_A Transcription elongatio 55.4 14 0.00047 36.2 5.1 44 60-103 900-963 (1219)
40 2id0_A Exoribonuclease 2; RNAs 43.0 35 0.0012 30.7 5.5 18 86-103 616-633 (644)
41 3bzc_A TEX; helix-turn-helix, 35.3 9.3 0.00032 35.6 0.5 44 60-103 652-714 (785)
42 3psf_A Transcription elongatio 30.1 11 0.00037 36.3 0.0 43 61-103 904-966 (1030)
43 1yez_A MM1357; MAR30, autostru 22.8 1.2E+02 0.0039 18.8 4.0 41 62-102 13-58 (68)
44 2p9r_A Alpha-2-M, alpha-2-macr 20.7 1.1E+02 0.0038 20.0 3.7 23 80-102 5-27 (102)
No 1
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-35 Score=239.98 Aligned_cols=130 Identities=19% Similarity=0.306 Sum_probs=113.0
Q ss_pred HHHHHHHHHhHHhceecCCceEEEEEeeeceeCCeeeeeCCCcceEEEEEEEEEEeeeecCcEEEEEEEEe---------
Q 048593 3 AIFVTRLLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNESGVVFFPVTFLCRTFLPVKGEILHGVIHIA--------- 73 (150)
Q Consensus 3 ~~~i~~ll~~~~~gk~~~~~GliV~V~di~~i~~G~I~~~gdG~v~~~V~FraivFrPf~gEVv~G~V~~v--------- 73 (150)
.-+|++.|.++|+|||.+++||||||+||.++++|+|.| |||++||+|+|+|++||||+||+++|+|++|
T Consensus 23 ~~~i~~~L~~kyegkv~~~~Gl~I~v~di~~i~eG~I~~-GdG~~~~~V~fk~~~f~p~vGEv~~G~Is~Vt~fGifVeL 101 (218)
T 2ckz_B 23 ISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLKP-GDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSL 101 (218)
T ss_dssp HHHHHHHHHHHHTTEEETTTEEEEEEEEEEEECCCEECS-SSSCEEEEEEEEEEEECCCTTCEEEEEEEEEETTEEEEEC
T ss_pred HHHHHHHHHHHhcCcCcCCccEEEEEEEeeeccCcEEeC-CCCCEEEEEEEEEEEecCCCCCEEEEEEEEEccCcEEEEc
Confidence 357889999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ---------------------cCCCceee---ccccceecCCCEEEEEEEEEEeeecCc---------------------
Q 048593 74 ---------------------VCEQPFFS---NEQQAKIRNGLVVQFLVTAVQWIDEGR--------------------- 108 (150)
Q Consensus 74 ---------------------~~~~~~~~---~~~~~~i~~gd~VR~RI~~v~~~d~~~--------------------- 108 (150)
..+++|++ ++++..++.||.|||||.++++.+..+
T Consensus 102 ~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 181 (218)
T 2ckz_B 102 LGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLENEIEGK 181 (218)
T ss_dssp TTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEEECCCCC---------------------
T ss_pred cCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEEcccCCCCCccccccccccccccccccc
Confidence 23345666 555678999999999999999976421
Q ss_pred -------CccCcEEEEEEccCCccccccCCCCCC
Q 048593 109 -------NLKKKYLVFGRVEGESLGPVSLSGWAG 135 (150)
Q Consensus 109 -------~~~~~~~~igsi~~d~LG~i~w~~w~~ 135 (150)
++++||.++|||++||||+++| |+-
T Consensus 182 ~~~~~~~~~~~p~~i~gs~~~~GLG~~~w--w~~ 213 (218)
T 2ckz_B 182 NEETPQNEKPPAYALLGSCQTDGMGLVSW--WEH 213 (218)
T ss_dssp ----------CSEEEEEECCSTTCEEGGG--CC-
T ss_pred cccccccCCCCCeEEEEEecCCCCchhhh--hhc
Confidence 2468999999999999999999 964
No 2
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-35 Score=235.08 Aligned_cols=129 Identities=16% Similarity=0.254 Sum_probs=113.0
Q ss_pred HHHHHHHHHhHHhceecCCceEEEEEeeeceeCCeeeeeCCCcceEEEEEEEEEEeeeecCcEEEEEEEEe---------
Q 048593 3 AIFVTRLLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNESGVVFFPVTFLCRTFLPVKGEILHGVIHIA--------- 73 (150)
Q Consensus 3 ~~~i~~ll~~~~~gk~~~~~GliV~V~di~~i~~G~I~~~gdG~v~~~V~FraivFrPf~gEVv~G~V~~v--------- 73 (150)
.-+|++.|.+.|+|||.+++||||||+|+.++++|+|.| |||++||+|+|||++||||+||+++|+|++|
T Consensus 23 ~~~i~~~L~~~~egkv~~~~Gl~I~v~di~~i~~g~I~~-GdG~~~~~V~fk~~~f~p~~GEv~~G~Vs~vt~~GifV~l 101 (203)
T 3ayh_B 23 KEALAEEIHKKYANKVIQNIGLAICVYDFLKIGEGIIKY-GDGSSYMNVVFRLIIFRPFRGEVMLGKIKSCSEEGIRVTI 101 (203)
T ss_dssp HHHHHHHHHHHHTTEEETTTEEEEEEEEEEEECCCEECT-TTCCEEEEEEEEEEEECCCTTCEEEEEEEEEETTEEEEEC
T ss_pred HHHHHHHhhhhhCCEEeCCccEEEEEEEeeEecccEEeC-CCCCEEEEEEEEEEEEccCCCCEEEEEEEEEeccEEEEEE
Confidence 457889999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred --------------------cCCCceee--------ccccceecCCCEEEEEEEEEEeeecCc---------------Cc
Q 048593 74 --------------------VCEQPFFS--------NEQQAKIRNGLVVQFLVTAVQWIDEGR---------------NL 110 (150)
Q Consensus 74 --------------------~~~~~~~~--------~~~~~~i~~gd~VR~RI~~v~~~d~~~---------------~~ 110 (150)
..+++|++ ++++..++.||.||+||.++++.+..+ +.
T Consensus 102 g~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~p~~~~~~~~~~~~~~~~~ 181 (203)
T 3ayh_B 102 SFFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIESEDFVDISPKRNKNATAITGTEALES 181 (203)
T ss_dssp SSCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEEEEEEECC--------------------
T ss_pred eCceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEEEEEEccccCCCCccccccccccccccC
Confidence 23345666 455668999999999999999965322 14
Q ss_pred cCcEEEEEEccCCccccccCCCCC
Q 048593 111 KKKYLVFGRVEGESLGPVSLSGWA 134 (150)
Q Consensus 111 ~~~~~~igsi~~d~LG~i~w~~w~ 134 (150)
.+||+++|||++||||+++| |+
T Consensus 182 ~~~~~i~gs~~~~gLG~~~W--w~ 203 (203)
T 3ayh_B 182 VSPYTLIASCSRDGLGIPAW--WK 203 (203)
T ss_dssp CCSEEEEEEBCSTTCBCGGG--GC
T ss_pred CCCeEEEEEecCCCCceeee--cC
Confidence 57999999999999999999 94
No 3
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=99.98 E-value=2.8e-32 Score=212.34 Aligned_cols=127 Identities=20% Similarity=0.211 Sum_probs=108.3
Q ss_pred HHHHHHHHhHHhceecCCceEEEEEeeeceeCCeeeeeCCCcceEEEEEEEEEEeeeecCcEEEEEEEEe----------
Q 048593 4 IFVTRLLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNESGVVFFPVTFLCRTFLPVKGEILHGVIHIA---------- 73 (150)
Q Consensus 4 ~~i~~ll~~~~~gk~~~~~GliV~V~di~~i~~G~I~~~gdG~v~~~V~FraivFrPf~gEVv~G~V~~v---------- 73 (150)
-++++.|.++++|||.+++|||||++|+.++++|+|.| |||+++|+|+|+|++||||+|||++|+|+++
T Consensus 24 ~~i~~~L~~k~~~kv~~~~G~~I~v~di~~~~~g~I~~-gdg~~~~~v~~~~iv~~p~~Gev~~G~V~~v~~~G~fv~l~ 102 (180)
T 4ayb_E 24 EIALNELRQQYQEKILKDLGLVLAILNVKTSEEGMLVF-GDGATYHEVEFDMITYVPVVQEVVEGEVLQVDNYGVFVNLG 102 (180)
T ss_dssp HHHHHHHHHHTTTCBCSSSCEEEEEEEEEEEEEEEECS-SCSSEEEEEEEEEEEECCCTTCEEEEEEEEEETTEEEEECS
T ss_pred HHHHHHHHHHhcCeEcCCCcEEEEeeeEeecCceeEcc-CchHHHHHHhhheeeeeccCCCEEEEEEeeeccceEEEEEC
Confidence 46889999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred -------------------cCCCceeeccccceecCCCEEEEEEEEEEeeecCcCccCcEEEEEEccCCccccccCCCCC
Q 048593 74 -------------------VCEQPFFSNEQQAKIRNGLVVQFLVTAVQWIDEGRNLKKKYLVFGRVEGESLGPVSLSGWA 134 (150)
Q Consensus 74 -------------------~~~~~~~~~~~~~~i~~gd~VR~RI~~v~~~d~~~~~~~~~~~igsi~~d~LG~i~w~~w~ 134 (150)
...+.|++++.+..++.||.||+||.+++....+ ....+.+||++||||+++| |+
T Consensus 103 ~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~~~~~~----~~~rI~ls~k~~gLG~~~W--~~ 176 (180)
T 4ayb_E 103 PMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVTG----RLPRIALTMRQPYLGKLEW--IT 176 (180)
T ss_dssp SSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEECC-----------CEEEECCSTTCEEHHH--HT
T ss_pred CccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEeCCCCc----ccCcEEEEcCCCCCCCChh--Hh
Confidence 2223455666667899999999999999863322 2456888999999999999 98
Q ss_pred CCc
Q 048593 135 GTD 137 (150)
Q Consensus 135 ~~~ 137 (150)
+++
T Consensus 177 ~~~ 179 (180)
T 4ayb_E 177 QAK 179 (180)
T ss_dssp TC-
T ss_pred hhh
Confidence 654
No 4
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=99.96 E-value=4.7e-29 Score=194.09 Aligned_cols=118 Identities=16% Similarity=0.273 Sum_probs=103.3
Q ss_pred HHHHHHHHhHHhceecCCceEEEEEe--eeceeCCeeeeeCCCcceEEEEEEEEEEeeeecCcEEEEEEEEe--------
Q 048593 4 IFVTRLLKGLINEKACKDQCYFLSVT--NLKSIGRERGTVNESGVVFFPVTFLCRTFLPVKGEILHGVIHIA-------- 73 (150)
Q Consensus 4 ~~i~~ll~~~~~gk~~~~~GliV~V~--di~~i~~G~I~~~gdG~v~~~V~FraivFrPf~gEVv~G~V~~v-------- 73 (150)
-++++.|.+.++|+|.+++|+||||+ |+.++++|+|.| |||+++|+|+|+|++||||+||+++|+|+++
T Consensus 25 ~~i~~~l~~~~~g~vi~~~G~~I~i~~idi~~i~~G~I~~-gdg~~~~~v~f~~ivf~p~~Gev~~G~V~~v~~fG~FV~ 103 (172)
T 3h0g_G 25 DYLKAKLLADVEGTCSGQYGYIICVLDSNTIDIDKGRVVP-GQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGFFAN 103 (172)
T ss_dssp HHHHHHHHHHHTTCEETTTEEEEEECTTTSEEECCCEECT-TTCCEEEEEEEEEEEECCCTTCEEECCCCEEETTEEECC
T ss_pred HHHHHHHHHHhCCcCcCCccEEEEEEeeeeeEeeCCEEEC-CCCcEEEEEEEEEeeeccCCCCEEEEEEEEEEcceEEEE
Confidence 46888899999999999999999999 999999999999 9999999999999999999999999999999
Q ss_pred -------------cC-------CCceeeccccceecCCCEEEEEEEEEEeeecCcCccCcEEEEEEccCCccccc
Q 048593 74 -------------VC-------EQPFFSNEQQAKIRNGLVVQFLVTAVQWIDEGRNLKKKYLVFGRVEGESLGPV 128 (150)
Q Consensus 74 -------------~~-------~~~~~~~~~~~~i~~gd~VR~RI~~v~~~d~~~~~~~~~~~igsi~~d~LG~i 128 (150)
++ ++.|.++..+..++.||.||+||.++++ +. ++++++|||++||||++
T Consensus 104 l~~~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~-~~-----~~~~~Igtm~~~~LG~~ 172 (172)
T 3h0g_G 104 IGPLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRT-DA-----TEIFAIATMKEDYLGVL 172 (172)
T ss_dssp BTTBCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEE-SS-----SCEEEEEECCSTTCEEC
T ss_pred eCCeEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEEEC-CC-----CCceEEEEcCCCCCCCC
Confidence 10 0122224445689999999999999998 43 37899999999999985
No 5
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=99.94 E-value=4.8e-27 Score=183.49 Aligned_cols=126 Identities=20% Similarity=0.266 Sum_probs=105.9
Q ss_pred HHHHHHHHhHHhceecCCceEEEEEeeeceeCCeeeeeCCCcceEEEEEEEEEEeeeecCcEEEEEEEEec---------
Q 048593 4 IFVTRLLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNESGVVFFPVTFLCRTFLPVKGEILHGVIHIAV--------- 74 (150)
Q Consensus 4 ~~i~~ll~~~~~gk~~~~~GliV~V~di~~i~~G~I~~~gdG~v~~~V~FraivFrPf~gEVv~G~V~~v~--------- 74 (150)
-+|+++|.+.++|||.+++|+|||++|+.++++|+|.+ +||+++|++.|++++|+|++||+++|+|+++.
T Consensus 24 ~~I~~~L~~~~~gk~~~~~G~~i~~idi~~~g~~~I~~-~d~~~~~~~~~~~i~~~~~~Gev~~G~V~~v~~~G~fV~l~ 102 (187)
T 1go3_E 24 ETVKKILMEKYEGRLDKDVGFVLSIVDVKDIGEGKVVH-GDGSAYHPVVFETLVYIPEMYELIEGEVVDVVEFGSFVRLG 102 (187)
T ss_dssp HHHHHHHHHHHTTCEETTTEEEEEEEEEEEECCCBCCT-TCCSEEEEEEEEEEEECCCTTCEEEEEEEEEETTEEEEECS
T ss_pred HHHHHHHHHHhCCeEcCCccEEEEEEEEeeccCCEEeC-CCccEEEEEEEEEEEEccCCCCEEEEEEEEEeCcEEEEEEc
Confidence 36888899999999999999999999999999999999 99999999999999999999999999999991
Q ss_pred --------------------CCCceeeccccceecCCCEEEEEEEEEEeeecCcCccCcEEEEEEccCCccccccCCCCC
Q 048593 75 --------------------CEQPFFSNEQQAKIRNGLVVQFLVTAVQWIDEGRNLKKKYLVFGRVEGESLGPVSLSGWA 134 (150)
Q Consensus 75 --------------------~~~~~~~~~~~~~i~~gd~VR~RI~~v~~~d~~~~~~~~~~~igsi~~d~LG~i~w~~w~ 134 (150)
.++.|++++....+++||.||+||.++...+.. ..++.+..|+++++||+++| |.
T Consensus 103 ~~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~---p~~~~I~lS~k~~~LG~~~w--~~ 177 (187)
T 1go3_E 103 PLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAER---KRGSKIALTMRQPYLGKLEW--IE 177 (187)
T ss_dssp SSEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC--------CEEEEECCSTTCEEHHH--HH
T ss_pred CccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccCC---CCccEEEEEEcCCCCCcHHH--Hh
Confidence 111222334446899999999999999974432 01578999999999999999 95
Q ss_pred C
Q 048593 135 G 135 (150)
Q Consensus 135 ~ 135 (150)
+
T Consensus 178 ~ 178 (187)
T 1go3_E 178 E 178 (187)
T ss_dssp H
T ss_pred h
Confidence 3
No 6
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=99.92 E-value=1.7e-24 Score=167.40 Aligned_cols=119 Identities=20% Similarity=0.326 Sum_probs=102.3
Q ss_pred HHHHHHHHhHHhceecCCceEEEEEeeeceeCCeeeeeCCCcceEEEEEEEEEEeeeecCcEEEEEEEEe----------
Q 048593 4 IFVTRLLKGLINEKACKDQCYFLSVTNLKSIGRERGTVNESGVVFFPVTFLCRTFLPVKGEILHGVIHIA---------- 73 (150)
Q Consensus 4 ~~i~~ll~~~~~gk~~~~~GliV~V~di~~i~~G~I~~~gdG~v~~~V~FraivFrPf~gEVv~G~V~~v---------- 73 (150)
-+++..|...+.+++.++.|+||+++|+.++++|+|.| +||.++++++|++++|+|++||+++|+|+++
T Consensus 24 ~~i~~~l~~~~~~~vi~~~G~~I~~~di~~i~~g~i~~-~d~~~~~~~~~~~~~~~~~~Gev~~G~V~~v~~fG~fV~l~ 102 (172)
T 2c35_B 24 NTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQP-GRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIG 102 (172)
T ss_dssp HHHHHHHHHHHTTCEETTTEEEEEEEEEEEECCCBCCT-TCSSEEEEEEEEEEEECCCTTCEEEEEEEEEETTEEEEEET
T ss_pred HHHHHHHHHHHcCcCcCCceEEEEEEEeeecCCeEEeC-CCCCEEEEEEEEEEEeeCCCCCEEEEEEEEEeCCEEEEEEC
Confidence 46777888888899999999999999999999999999 9999999999999999999999999999999
Q ss_pred ------------------cCCCceee--ccccceecCCCEEEEEEEEEEeeecCcCccCcEEEEEEccCCcccccc
Q 048593 74 ------------------VCEQPFFS--NEQQAKIRNGLVVQFLVTAVQWIDEGRNLKKKYLVFGRVEGESLGPVS 129 (150)
Q Consensus 74 ------------------~~~~~~~~--~~~~~~i~~gd~VR~RI~~v~~~d~~~~~~~~~~~igsi~~d~LG~i~ 129 (150)
+.+++|.| +.++..++.||.||+||.++.+ +. +++.++|||++||||+++
T Consensus 103 ~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~-~~-----~~~~~igsm~~~~LG~~~ 172 (172)
T 2c35_B 103 PMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV-DK-----NDIFAIGSLMDDYLGLVS 172 (172)
T ss_dssp TEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEE-ET-----TEEEEEEECCSTTCEEC-
T ss_pred CEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEc-CC-----CCcEEEEEecCCCCCCCC
Confidence 11222222 2335589999999999999998 43 479999999999999985
No 7
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=99.91 E-value=4.9e-24 Score=165.12 Aligned_cols=118 Identities=18% Similarity=0.251 Sum_probs=87.5
Q ss_pred HHHHHHHHhHHhceecCCceEEEEEeeec--eeCCeeeeeCCCcceEEEEEEEEEEeeeecCcEEEEEEEEe--------
Q 048593 4 IFVTRLLKGLINEKACKDQCYFLSVTNLK--SIGRERGTVNESGVVFFPVTFLCRTFLPVKGEILHGVIHIA-------- 73 (150)
Q Consensus 4 ~~i~~ll~~~~~gk~~~~~GliV~V~di~--~i~~G~I~~~gdG~v~~~V~FraivFrPf~gEVv~G~V~~v-------- 73 (150)
-+++..|...+.+++.++.|+||+++||. ++++|+|.| |||+++|++.|++++|+|+.||+++|+|+++
T Consensus 24 ~~i~~~i~~~~i~~vig~~G~~I~~~di~~~di~~g~i~~-~d~~~~~~~~~~~~~~~~~~Gev~~G~V~~v~~fG~FV~ 102 (171)
T 1y14_B 24 QYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGRILP-TDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQ 102 (171)
T ss_dssp HHHHHHHHHHHTTEEETTTEEEEEECCGGGCBCC-------------CEEEEEEEEECCCTTCEEEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHcCcCcCCceEEEEEEEecccccCccEEeC-CCCCEEEEEEEEEEEccCCCCCEEEEEEEEEecCEEEEE
Confidence 35677777788899999999999999999 999999999 9999999999999999999999999999999
Q ss_pred -------------c-------CCCceeeccccceecCCCEEEEEEEEEEeeecCcCccCcEEEEEEccCCccccc
Q 048593 74 -------------V-------CEQPFFSNEQQAKIRNGLVVQFLVTAVQWIDEGRNLKKKYLVFGRVEGESLGPV 128 (150)
Q Consensus 74 -------------~-------~~~~~~~~~~~~~i~~gd~VR~RI~~v~~~d~~~~~~~~~~~igsi~~d~LG~i 128 (150)
+ .+++|.+..+...++.||.||+||.++.+ +. +++.++|||++||||++
T Consensus 103 l~~~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~-~~-----~~~~~igsm~~~~LG~~ 171 (171)
T 1y14_B 103 VGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCIS-QV-----SSIHAIGSIKEDYLGAI 171 (171)
T ss_dssp ETTEEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEE-ET-----TEEEEEEECCSTTCEEC
T ss_pred ecCeEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEEc-CC-----CCcEEEEEcCCCCCCCC
Confidence 1 11222221111569999999999999998 43 47999999999999985
No 8
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=99.90 E-value=2.3e-23 Score=168.02 Aligned_cols=119 Identities=18% Similarity=0.255 Sum_probs=101.3
Q ss_pred HHHHHHHHhHHhceecCCceEEEEEeeec--eeCCeeeeeCCCcceEEEEEEEEEEeeeecCcEEEEEEEEe--------
Q 048593 4 IFVTRLLKGLINEKACKDQCYFLSVTNLK--SIGRERGTVNESGVVFFPVTFLCRTFLPVKGEILHGVIHIA-------- 73 (150)
Q Consensus 4 ~~i~~ll~~~~~gk~~~~~GliV~V~di~--~i~~G~I~~~gdG~v~~~V~FraivFrPf~gEVv~G~V~~v-------- 73 (150)
-+++..|...+.|+|.++.|+||+++||. ++++|+|.| |||+++|++.|++++|+|++||+++|+|+++
T Consensus 24 ~~i~~~I~~~~ig~vIg~~G~vI~~~dI~~~di~dG~I~~-gdg~~~~~v~~~~i~~~p~vGev~~G~V~~vt~fG~FVe 102 (215)
T 2b8k_G 24 QYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGRILP-TDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQ 102 (215)
T ss_dssp HHHHHHHHHSSTTCEETTTEEEEEECCSTTCBCCCEEECS-SSCCEEEEEECCEEEECCCTTEEEEEEEEEEETTEEEEE
T ss_pred HHHHhcCCHHHCCeEcCCCCEEEEEEEeeecccccceEeC-CCHHHHHHHHhhhheeccCCCCEEEEEEEEEecceEEEE
Confidence 35677777777789999999999999999 999999999 9999999999999999999999999999999
Q ss_pred -------------c-------CCCceeeccccceecCCCEEEEEEEEEEeeecCcCccCcEEEEEEccCCcccccc
Q 048593 74 -------------V-------CEQPFFSNEQQAKIRNGLVVQFLVTAVQWIDEGRNLKKKYLVFGRVEGESLGPVS 129 (150)
Q Consensus 74 -------------~-------~~~~~~~~~~~~~i~~gd~VR~RI~~v~~~d~~~~~~~~~~~igsi~~d~LG~i~ 129 (150)
+ .+++|.+......++.||.||+||.++.+ +. .++..+|||++||||+++
T Consensus 103 lg~~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~-~~-----~~i~~IgSmk~~~LG~~~ 172 (215)
T 2b8k_G 103 VGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCIS-QV-----SSIHAIGSIKEDYLGAIS 172 (215)
T ss_dssp CTTSEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEE-ET-----TEEEEEEECCSTTCEEC-
T ss_pred ecCcEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEEEc-CC-----CccEEEEEcCCCCCCCcc
Confidence 1 12233222112579999999999999998 43 479999999999999996
No 9
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.9e-19 Score=144.73 Aligned_cols=107 Identities=18% Similarity=0.134 Sum_probs=77.0
Q ss_pred HHHHHHHHhHHhceecCCc-eEEEEEeeeceeCC------------eeeeeCCCcceEEEEEEEEEEeeeecCcEEEEEE
Q 048593 4 IFVTRLLKGLINEKACKDQ-CYFLSVTNLKSIGR------------ERGTVNESGVVFFPVTFLCRTFLPVKGEILHGVI 70 (150)
Q Consensus 4 ~~i~~ll~~~~~gk~~~~~-GliV~V~di~~i~~------------G~I~~~gdG~v~~~V~FraivFrPf~gEVv~G~V 70 (150)
.++.+.|..+.+ |++.++ |+|+|++|+..+++ |+|.| ++|.++|+|+||++|||||+||||+|+|
T Consensus 60 ~i~~~~L~~ll~-ky~~~~~Gv~la~~di~~~~~~~~~~d~~~~~~g~I~~-~~g~~~~~V~~~~iVFrPf~GevL~G~V 137 (214)
T 2rf4_A 60 GVMKQHLNPLVM-KYNNKVGGVVLGYEGLKILDADPLSKEDTSEKLIKITP-DTPFGFTWCHVNLYVWQPQVGDVLEGYI 137 (214)
T ss_dssp HHHHHHHHHHBT-SEETTTTEEEEEEEEEETTSCCC------------------CCCEEEEEEEEEEECCCTTCEEEEEE
T ss_pred HHHHHHHHHHHh-cccCCCCEEEEEEECeEeccCCCcCccccccceeEEeC-CCceEEEEEEEEEEEEecCCCCEEEEEE
Confidence 355667877765 777776 89999999976665 79999 9999999999999999999999999999
Q ss_pred EEe-----------------------------cCC-----CceeeccccceecCCCEEEEEEEEEEeeecCcCccCcEEE
Q 048593 71 HIA-----------------------------VCE-----QPFFSNEQQAKIRNGLVVQFLVTAVQWIDEGRNLKKKYLV 116 (150)
Q Consensus 71 ~~v-----------------------------~~~-----~~~~~~~~~~~i~~gd~VR~RI~~v~~~d~~~~~~~~~~~ 116 (150)
+.+ +.+ +.|.+.++ .. .|+.|||||.+++.... -..+
T Consensus 138 ~~~s~~~Ig~~~~G~Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~-~~--ig~~IRFrV~~~~~~~~------~lsI 208 (214)
T 2rf4_A 138 FIQSASHIGLLIHDAFNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNG-EP--IDGKLRFTVRNVHTTGR------VVSV 208 (214)
T ss_dssp CCCCSSCEEEEETTTEEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSC-CB--CCSEEEEEEEEEECCSS------SCEE
T ss_pred EEECCCcEEEEEeCCEEEEEcHHHCCCcccccccccccCCCceEcCCC-CC--CCCEEEEEEEEEEecCC------EEEE
Confidence 998 111 22333322 22 59999999999997432 4778
Q ss_pred EEEcc
Q 048593 117 FGRVE 121 (150)
Q Consensus 117 igsi~ 121 (150)
.|||-
T Consensus 209 ~Gsll 213 (214)
T 2rf4_A 209 DGTLI 213 (214)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 88874
No 10
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=96.88 E-value=0.00074 Score=52.45 Aligned_cols=67 Identities=15% Similarity=0.231 Sum_probs=45.2
Q ss_pred eeeecCcEEEEEEEEecCC----------C-cee--------eccccceecCCCEEEEEEEEEEeeecCcCccCcEEEEE
Q 048593 58 FLPVKGEILHGVIHIAVCE----------Q-PFF--------SNEQQAKIRNGLVVQFLVTAVQWIDEGRNLKKKYLVFG 118 (150)
Q Consensus 58 FrPf~gEVv~G~V~~v~~~----------~-~~~--------~~~~~~~i~~gd~VR~RI~~v~~~d~~~~~~~~~~~ig 118 (150)
|.|..|++|.|+|+++..+ . ..+ .+..+..++.||.||+||.++.- +.. +...++.
T Consensus 3 Y~P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~g~~k~~r~~l~~GDlV~ArV~~~~~-~~~----~~Ltc~~ 77 (175)
T 2ja9_A 3 YIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAEK-ELE----AEIECFD 77 (175)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSSTTCCSSSCCCCCTTCEEEEEEEECCT-TSC----CEEESSC
T ss_pred ccCCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHCCchhhhhhccCCCCCEEEEEEEEecC-CCc----eEEEecc
Confidence 7899999999999999111 1 111 12233469999999999998874 321 2332222
Q ss_pred --EccCCcccccc
Q 048593 119 --RVEGESLGPVS 129 (150)
Q Consensus 119 --si~~d~LG~i~ 129 (150)
++++++||.+.
T Consensus 78 ~~~~r~~~lG~L~ 90 (175)
T 2ja9_A 78 STTGRDAGFGILE 90 (175)
T ss_dssp TTTCSCTTCEEEC
T ss_pred cccccccCCcCcC
Confidence 37888999875
No 11
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=96.16 E-value=0.01 Score=47.49 Aligned_cols=63 Identities=14% Similarity=0.261 Sum_probs=43.5
Q ss_pred eeeecCcEEEEEEEEecCCCc----------ee-----e-----ccccceecCCCEEEEEEEEEEeeecCcCccCcEEEE
Q 048593 58 FLPVKGEILHGVIHIAVCEQP----------FF-----S-----NEQQAKIRNGLVVQFLVTAVQWIDEGRNLKKKYLVF 117 (150)
Q Consensus 58 FrPf~gEVv~G~V~~v~~~~~----------~~-----~-----~~~~~~i~~gd~VR~RI~~v~~~d~~~~~~~~~~~i 117 (150)
|.|-.|++|.|+|+++.+... .+ . .+-...+++||.|++||..+.- + .++.+
T Consensus 53 y~p~~GDiV~G~V~~v~~~~a~V~I~~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~-~------~~i~L- 124 (229)
T 2ba0_A 53 YTPSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDP-K------MKVTL- 124 (229)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECT-T------CCEEE-
T ss_pred ccCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECC-C------CcEEE-
Confidence 889999999999999922211 11 0 0112369999999999999862 2 23444
Q ss_pred EEccCCcccccc
Q 048593 118 GRVEGESLGPVS 129 (150)
Q Consensus 118 gsi~~d~LG~i~ 129 (150)
|+++.+||.+.
T Consensus 125 -S~r~~~lG~L~ 135 (229)
T 2ba0_A 125 -TMKDRICRPIR 135 (229)
T ss_dssp -ECCSSSCEEES
T ss_pred -EEccccCCccc
Confidence 67888999763
No 12
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=95.77 E-value=0.016 Score=46.35 Aligned_cols=62 Identities=24% Similarity=0.397 Sum_probs=42.5
Q ss_pred eeeecCcEEEEEEEEecCCCce---------ee-----cc---------ccceecCCCEEEEEEEEEEeeecCcCccCcE
Q 048593 58 FLPVKGEILHGVIHIAVCEQPF---------FS-----NE---------QQAKIRNGLVVQFLVTAVQWIDEGRNLKKKY 114 (150)
Q Consensus 58 FrPf~gEVv~G~V~~v~~~~~~---------~~-----~~---------~~~~i~~gd~VR~RI~~v~~~d~~~~~~~~~ 114 (150)
|.|-.|+++.|+|+++.+...+ +. .+ -...+++||.|++||.++. +. .++
T Consensus 62 y~p~~GDiV~G~V~~v~~~~~~V~I~~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~--~~-----~~i 134 (235)
T 2z0s_A 62 YVPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFD--KT-----RSP 134 (235)
T ss_dssp CCCCTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEEC--TT-----SCE
T ss_pred cCCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEEC--CC-----CcE
Confidence 7999999999999999222111 10 11 0126999999999999986 22 134
Q ss_pred EEEEEccCCccccc
Q 048593 115 LVFGRVEGESLGPV 128 (150)
Q Consensus 115 ~~igsi~~d~LG~i 128 (150)
.+ |+++..||.+
T Consensus 135 ~L--S~k~~~lG~l 146 (235)
T 2z0s_A 135 LL--TVQGEGLGRI 146 (235)
T ss_dssp EE--ECCSSSCEEC
T ss_pred EE--EEecccCccc
Confidence 43 6788888865
No 13
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=95.40 E-value=0.049 Score=44.14 Aligned_cols=63 Identities=16% Similarity=0.190 Sum_probs=42.8
Q ss_pred EeeeecCcEEEEEEEEecCCCce---------ee-----ccc--------cceecCCCEEEEEEEEEEeeecCcCccCcE
Q 048593 57 TFLPVKGEILHGVIHIAVCEQPF---------FS-----NEQ--------QAKIRNGLVVQFLVTAVQWIDEGRNLKKKY 114 (150)
Q Consensus 57 vFrPf~gEVv~G~V~~v~~~~~~---------~~-----~~~--------~~~i~~gd~VR~RI~~v~~~d~~~~~~~~~ 114 (150)
.|.|-.|++|.|+|+++.+...+ +. .+. ...+++||.|++||.++.- + .++
T Consensus 69 ~y~p~~GDiV~G~V~~v~~~ga~VdI~~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~-~------~~i 141 (251)
T 2je6_I 69 FYYPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDR-S------IDP 141 (251)
T ss_dssp CCCCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEET-T------EEE
T ss_pred ccCCCCCCEEEEEEEEEeCceEEEEcCCCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECC-C------CcE
Confidence 47899999999999999222111 10 101 1268999999999999872 2 123
Q ss_pred EEEEEccCCccccc
Q 048593 115 LVFGRVEGESLGPV 128 (150)
Q Consensus 115 ~~igsi~~d~LG~i 128 (150)
.. |+++..||.+
T Consensus 142 ~L--S~r~~~lG~L 153 (251)
T 2je6_I 142 VL--SVKGKDLGRV 153 (251)
T ss_dssp EE--ECCSTTCEEC
T ss_pred EE--EEccccCCcc
Confidence 33 6788899965
No 14
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=94.82 E-value=0.02 Score=48.04 Aligned_cols=62 Identities=15% Similarity=0.227 Sum_probs=41.2
Q ss_pred eeeecCcEEEEEEEEecCC----------Cce-------ee-----c-------cccceecCCCEEEEEEEEEEeeecCc
Q 048593 58 FLPVKGEILHGVIHIAVCE----------QPF-------FS-----N-------EQQAKIRNGLVVQFLVTAVQWIDEGR 108 (150)
Q Consensus 58 FrPf~gEVv~G~V~~v~~~----------~~~-------~~-----~-------~~~~~i~~gd~VR~RI~~v~~~d~~~ 108 (150)
|.|..|++|.|+|+++... ... |. . +-...+++||.||+||.++. +.
T Consensus 91 Y~P~vGDvViG~Vt~V~~~~a~VdI~s~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~--~~-- 166 (308)
T 2nn6_H 91 YIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVF--SD-- 166 (308)
T ss_dssp CCCCSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEE--TT--
T ss_pred cCCCCCCEEEEEEEEEeCceEEEEECCCcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcC--CC--
Confidence 7899999999999999111 100 10 0 00135899999999999988 22
Q ss_pred CccCcEEEEEEccCCccccc
Q 048593 109 NLKKKYLVFGRVEGESLGPV 128 (150)
Q Consensus 109 ~~~~~~~~igsi~~d~LG~i 128 (150)
.++.. |+++++||.+
T Consensus 167 ---~~i~L--Str~~~LGkL 181 (308)
T 2nn6_H 167 ---GAVSL--HTRSLKYGKL 181 (308)
T ss_dssp ---TEEEE--ECCSSTTCEE
T ss_pred ---CCEEE--EecCcCCccc
Confidence 23443 6677888843
No 15
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=94.78 E-value=0.061 Score=42.43 Aligned_cols=63 Identities=21% Similarity=0.187 Sum_probs=41.5
Q ss_pred eeeecCcEEEEEEEEecCCCceee---------------------------c--cccceecCCCEEEEEEEEEEeeecCc
Q 048593 58 FLPVKGEILHGVIHIAVCEQPFFS---------------------------N--EQQAKIRNGLVVQFLVTAVQWIDEGR 108 (150)
Q Consensus 58 FrPf~gEVv~G~V~~v~~~~~~~~---------------------------~--~~~~~i~~gd~VR~RI~~v~~~d~~~ 108 (150)
|.|-.|++|.|+|+++.+...+.. + +-...+++||.|++||+++. +.
T Consensus 77 y~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~--~~-- 152 (209)
T 2nn6_I 77 LLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLG--DA-- 152 (209)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEE--TT--
T ss_pred CCCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEe--CC--
Confidence 789999999999999922211100 0 01124899999999999985 32
Q ss_pred CccCcEEEEEEccCCccccc
Q 048593 109 NLKKKYLVFGRVEGESLGPV 128 (150)
Q Consensus 109 ~~~~~~~~igsi~~d~LG~i 128 (150)
.-.+.=|+++..||.+
T Consensus 153 ----~~~i~LS~k~~~lGVv 168 (209)
T 2nn6_I 153 ----QSNYLLTTAENELGVV 168 (209)
T ss_dssp ----TTEEEEECCSSSCEEC
T ss_pred ----CCeEEEEEecCCCcEE
Confidence 1134446777777776
No 16
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=94.45 E-value=0.027 Score=40.08 Aligned_cols=53 Identities=15% Similarity=0.098 Sum_probs=36.1
Q ss_pred EEEEEEEeeeecCcEEEEEEEEecCCCce---------ee-----------ccccceecCCCEEEEEEEEEEe
Q 048593 51 VTFLCRTFLPVKGEILHGVIHIAVCEQPF---------FS-----------NEQQAKIRNGLVVQFLVTAVQW 103 (150)
Q Consensus 51 V~FraivFrPf~gEVv~G~V~~v~~~~~~---------~~-----------~~~~~~i~~gd~VR~RI~~v~~ 103 (150)
..|..+.++|..|++++|+|+++.+-..+ +. .+....+++||.|++||..+..
T Consensus 19 ~p~~~~~~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd~ 91 (115)
T 2khi_A 19 SHWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDE 91 (115)
T ss_dssp --CCCSSCSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEET
T ss_pred CCHHHHhhcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEEC
Confidence 44566667889999999999999221111 10 1112369999999999999874
No 17
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.83 E-value=0.048 Score=39.26 Aligned_cols=52 Identities=13% Similarity=0.088 Sum_probs=37.5
Q ss_pred EEEEEEeeeecCcEEEEEEEEecCCCce----------ee----------ccccceecCCCEEEEEEEEEEe
Q 048593 52 TFLCRTFLPVKGEILHGVIHIAVCEQPF----------FS----------NEQQAKIRNGLVVQFLVTAVQW 103 (150)
Q Consensus 52 ~FraivFrPf~gEVv~G~V~~v~~~~~~----------~~----------~~~~~~i~~gd~VR~RI~~v~~ 103 (150)
.|+.+.+.|..|+++.|+|+++.+...+ |. .+....++.||.|++||..+..
T Consensus 12 ~~~~~~~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~vd~ 83 (119)
T 2cqo_A 12 RPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREM 83 (119)
T ss_dssp CCCCSCCSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEE
T ss_pred chhhhhcccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEEec
Confidence 4667789999999999999999222211 11 0111258999999999999875
No 18
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=93.36 E-value=0.22 Score=32.88 Aligned_cols=45 Identities=13% Similarity=0.090 Sum_probs=31.7
Q ss_pred eeecCcEEEEEEEEecCCCcee---------e--ccc-c---ceecCCCEEEEEEEEEEe
Q 048593 59 LPVKGEILHGVIHIAVCEQPFF---------S--NEQ-Q---AKIRNGLVVQFLVTAVQW 103 (150)
Q Consensus 59 rPf~gEVv~G~V~~v~~~~~~~---------~--~~~-~---~~i~~gd~VR~RI~~v~~ 103 (150)
.|..|+++.|+|+++.+...++ . ++- . ..++.||.|++||..+..
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~~~~~~~~~Gd~V~v~V~~vd~ 61 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLRLENLNVGDEIIVQAIDVRP 61 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSSCCGGGCCTTCEEEEEEEEEET
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCcccceeeCCCCEEEEEEEEEEC
Confidence 5778999999999993332221 1 110 0 258999999999999874
No 19
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=92.39 E-value=0.27 Score=34.30 Aligned_cols=46 Identities=20% Similarity=0.188 Sum_probs=31.7
Q ss_pred eeeecCcEEEEEEEEecCCCceee-------------------ccccceecCCCEEEEEEEEEEe
Q 048593 58 FLPVKGEILHGVIHIAVCEQPFFS-------------------NEQQAKIRNGLVVQFLVTAVQW 103 (150)
Q Consensus 58 FrPf~gEVv~G~V~~v~~~~~~~~-------------------~~~~~~i~~gd~VR~RI~~v~~ 103 (150)
..|..|+++.|+|+++.+...++. ......+++||.|++||..+..
T Consensus 27 ~~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~~vd~ 91 (109)
T 2khj_A 27 ALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDR 91 (109)
T ss_dssp TTCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEEET
T ss_pred hcCCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCcccccChhhccCCCCEEEEEEEEEEC
Confidence 356689999999999932222110 1112358999999999999874
No 20
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=91.46 E-value=0.3 Score=40.52 Aligned_cols=64 Identities=14% Similarity=0.274 Sum_probs=41.7
Q ss_pred eeeecCcEEEEEEEEecCCC----------ce-----ee---ccccceecCCCEEEEEEEEEEeeecCcCccCcEEEE--
Q 048593 58 FLPVKGEILHGVIHIAVCEQ----------PF-----FS---NEQQAKIRNGLVVQFLVTAVQWIDEGRNLKKKYLVF-- 117 (150)
Q Consensus 58 FrPf~gEVv~G~V~~v~~~~----------~~-----~~---~~~~~~i~~gd~VR~RI~~v~~~d~~~~~~~~~~~i-- 117 (150)
|.|-+|.+|-|+|+++..+. .. |. +.....++.||.|++||..+.- +. ++.+.
T Consensus 123 YiP~vGDiVIG~Vt~v~~~~~~VdI~s~~~a~L~~~~f~Gatk~~r~~f~~GDlV~ArV~s~~~-~~------~~eLsc~ 195 (289)
T 2nn6_G 123 YVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANK-DM------EPEMVCI 195 (289)
T ss_dssp CCCCSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSSSCCSSCSSSSSCTTCEEEEEEEECCT-TS------CCEEECS
T ss_pred CCCCCCCEEEEEEEEEeCcEEEEEECCCceeEEehhhcCcchhhhhhhcCCCCEEEEEEEEcCC-CC------ceEEEec
Confidence 78999999999999992211 11 11 1223369999999999997642 21 23331
Q ss_pred E-EccCCccccc
Q 048593 118 G-RVEGESLGPV 128 (150)
Q Consensus 118 g-si~~d~LG~i 128 (150)
. +.++.+||++
T Consensus 196 ~~~~k~~~lG~L 207 (289)
T 2nn6_G 196 DSCGRANGMGVI 207 (289)
T ss_dssp BTTTTBCCCCSC
T ss_pred ccccccccCCEe
Confidence 1 2367889987
No 21
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=90.63 E-value=0.71 Score=32.57 Aligned_cols=62 Identities=18% Similarity=0.154 Sum_probs=41.2
Q ss_pred eeecCcEEEEEEEEecCCCce----------ee--c---------cccceecCCCEEEEEEEEEEeeecCcCccCcEEEE
Q 048593 59 LPVKGEILHGVIHIAVCEQPF----------FS--N---------EQQAKIRNGLVVQFLVTAVQWIDEGRNLKKKYLVF 117 (150)
Q Consensus 59 rPf~gEVv~G~V~~v~~~~~~----------~~--~---------~~~~~i~~gd~VR~RI~~v~~~d~~~~~~~~~~~i 117 (150)
.+..|++++|+|+++.+-..+ +. + +....++.||.|++||..+.. + .-.+.
T Consensus 18 ~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~-~-------~~~i~ 89 (119)
T 1wi5_A 18 ALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKG-N-------GGVVS 89 (119)
T ss_dssp TCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCT-T-------SCEEE
T ss_pred cCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecccccccccCccCEeCCCCEEEEEEEEEeC-C-------CCEEE
Confidence 357899999999999222211 11 1 112469999999999998753 1 22455
Q ss_pred EEccCCccccc
Q 048593 118 GRVEGESLGPV 128 (150)
Q Consensus 118 gsi~~d~LG~i 128 (150)
=|++...||..
T Consensus 90 Lslk~~~l~~~ 100 (119)
T 1wi5_A 90 LSVGHSEVSTA 100 (119)
T ss_dssp EECCCCCSCCC
T ss_pred EEEchhhcccc
Confidence 67777777754
No 22
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=90.39 E-value=0.57 Score=33.86 Aligned_cols=45 Identities=20% Similarity=0.124 Sum_probs=31.2
Q ss_pred eeecCcEEEEEEEEecCCCcee---------e----------ccccceecCCCEEEEEEEEEEe
Q 048593 59 LPVKGEILHGVIHIAVCEQPFF---------S----------NEQQAKIRNGLVVQFLVTAVQW 103 (150)
Q Consensus 59 rPf~gEVv~G~V~~v~~~~~~~---------~----------~~~~~~i~~gd~VR~RI~~v~~ 103 (150)
.+..|+++.|+|+++.+-..++ . .+-...+.+||.|++||..+..
T Consensus 4 ~~~vG~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~ 67 (130)
T 2k4k_A 4 KFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDE 67 (130)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEET
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeC
Confidence 4678999999999992222111 0 1112469999999999999874
No 23
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.40 E-value=0.71 Score=31.94 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=32.1
Q ss_pred EeeeecCcEEEEEEEEecCCCce------------ee--c---------cccceecCCCEEEEEEEEEE
Q 048593 57 TFLPVKGEILHGVIHIAVCEQPF------------FS--N---------EQQAKIRNGLVVQFLVTAVQ 102 (150)
Q Consensus 57 vFrPf~gEVv~G~V~~v~~~~~~------------~~--~---------~~~~~i~~gd~VR~RI~~v~ 102 (150)
.+.|..|+++.|+|+++.+-..+ +. + +....++.||.|++||..+.
T Consensus 7 ~~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd 75 (103)
T 2eqs_A 7 GEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFT 75 (103)
T ss_dssp CSSCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEE
T ss_pred cccCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEE
Confidence 45788999999999999222111 11 0 01135899999999999986
No 24
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=87.29 E-value=0.029 Score=51.98 Aligned_cols=73 Identities=14% Similarity=0.100 Sum_probs=7.3
Q ss_pred eeceeCCeeeeeCCCcceEEE--EEEEEEEeeeecCcEEEEEEEEecCCCcee-------------------ecccccee
Q 048593 30 NLKSIGRERGTVNESGVVFFP--VTFLCRTFLPVKGEILHGVIHIAVCEQPFF-------------------SNEQQAKI 88 (150)
Q Consensus 30 di~~i~~G~I~~~gdG~v~~~--V~FraivFrPf~gEVv~G~V~~v~~~~~~~-------------------~~~~~~~i 88 (150)
||.+-|..+|.. .|+.+... -.++.++..|..|++++|+|+++.+-..++ .++-...+
T Consensus 604 di~ddG~v~I~~-~~~~~~~~A~~~i~~i~~~~~vG~v~~G~V~~I~~fGaFVel~~g~eGLvHiSels~~rv~~~~d~~ 682 (726)
T 4aid_A 604 DINDDGVVKVSA-SDGAKIKAAIDWIKSITDEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNERVAKPSDVL 682 (726)
T ss_dssp ----------CC-SCHHHHHHHHHC-------------------------------------------------------
T ss_pred eEECCceEEEEe-CCHHHHHHHHHHHHHHhhhhcCCcEEEEEEEEEeccEEEEEECCCcEEEEEHHHcCcccccCccccC
Confidence 455555556656 66666554 568889999999999999999992111111 11122369
Q ss_pred cCCCEEEEEEEEEEe
Q 048593 89 RNGLVVQFLVTAVQW 103 (150)
Q Consensus 89 ~~gd~VR~RI~~v~~ 103 (150)
+.||.|++||..+.-
T Consensus 683 kvGD~V~VkVi~iD~ 697 (726)
T 4aid_A 683 KEGQMVKVKLLGFDD 697 (726)
T ss_dssp ---------------
T ss_pred CCCCEEEEEEEEECC
Confidence 999999999999863
No 25
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=87.07 E-value=0.85 Score=34.73 Aligned_cols=43 Identities=9% Similarity=0.033 Sum_probs=29.7
Q ss_pred EeeeecCcEEEEEEEEecCCCce-------------------ee----------ccccceecCCCEEEEEEEE
Q 048593 57 TFLPVKGEILHGVIHIAVCEQPF-------------------FS----------NEQQAKIRNGLVVQFLVTA 100 (150)
Q Consensus 57 vFrPf~gEVv~G~V~~v~~~~~~-------------------~~----------~~~~~~i~~gd~VR~RI~~ 100 (150)
-|.|- |+++.|+|+++.+...+ +. ++-...++.||.|++||++
T Consensus 53 ~y~p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~ 124 (179)
T 3m7n_A 53 PEIVK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG 124 (179)
T ss_dssp CCCCT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE
T ss_pred cccCC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC
Confidence 46788 99999999999222111 10 0112368999999999997
No 26
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=87.05 E-value=0.12 Score=47.84 Aligned_cols=81 Identities=14% Similarity=0.034 Sum_probs=0.0
Q ss_pred cCCceEEEEEeeeceeCCeeeeeCCCcceEEEE--EEEEEEeeeecCcEEEEEEEEecCCCcee----------------
Q 048593 19 CKDQCYFLSVTNLKSIGRERGTVNESGVVFFPV--TFLCRTFLPVKGEILHGVIHIAVCEQPFF---------------- 80 (150)
Q Consensus 19 ~~~~GliV~V~di~~i~~G~I~~~gdG~v~~~V--~FraivFrPf~gEVv~G~V~~v~~~~~~~---------------- 80 (150)
..+.|.. +||.+-+.-.|.. .|....... .++.++..|..|++++|+|+++.+-..++
T Consensus 586 ~~~~G~~---IdI~~dg~v~I~~-~~~~~~~~a~~~i~~i~~~~~vG~i~~G~V~~i~~fGaFVel~~g~eGLvHiSel~ 661 (723)
T 3cdi_A 586 TEETGTT---IEIEDDGTVKIAA-TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA 661 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ehhhCce---EEecCCccEEEec-CCHHHHHHHHHHHHHHhhhhhcCcEEEEEEEEEecceEEEEeCCCceEEEEHHHcC
Confidence 3456644 3565544444444 555555433 57788999999999999999992221111
Q ss_pred ---eccccceecCCCEEEEEEEEEEe
Q 048593 81 ---SNEQQAKIRNGLVVQFLVTAVQW 103 (150)
Q Consensus 81 ---~~~~~~~i~~gd~VR~RI~~v~~ 103 (150)
.++-...++.||.|++||.++.-
T Consensus 662 ~~~v~~~~~~~~vGd~V~VkVi~vd~ 687 (723)
T 3cdi_A 662 DKRVEKVTDYLQMGQEVPVKVLEVDR 687 (723)
T ss_dssp --------------------------
T ss_pred CccccCcccccCCCCEEEEEEEEECC
Confidence 11112368999999999999873
No 27
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=86.56 E-value=1.2 Score=34.36 Aligned_cols=44 Identities=16% Similarity=0.096 Sum_probs=28.6
Q ss_pred eecCcEEEEEEEEecCCCceee---------------------ccccceecCCCEEEEEEEEEEe
Q 048593 60 PVKGEILHGVIHIAVCEQPFFS---------------------NEQQAKIRNGLVVQFLVTAVQW 103 (150)
Q Consensus 60 Pf~gEVv~G~V~~v~~~~~~~~---------------------~~~~~~i~~gd~VR~RI~~v~~ 103 (150)
|..|+++.|+|+++.+-..++. .+-...+++||.|++||..+..
T Consensus 13 p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~ 77 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDK 77 (182)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEET
T ss_pred CCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEEC
Confidence 7899999999999922222211 1112368999999999999863
No 28
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=83.59 E-value=2.1 Score=32.64 Aligned_cols=44 Identities=18% Similarity=0.088 Sum_probs=30.3
Q ss_pred eecCcEEEEEEEEecCCCce-----------ee----------ccccceecCCCEEEEEEEEEEe
Q 048593 60 PVKGEILHGVIHIAVCEQPF-----------FS----------NEQQAKIRNGLVVQFLVTAVQW 103 (150)
Q Consensus 60 Pf~gEVv~G~V~~v~~~~~~-----------~~----------~~~~~~i~~gd~VR~RI~~v~~ 103 (150)
|-.|+++.|+|+++.+-..+ +. .+-...+++||.|++||..+..
T Consensus 13 p~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~ 77 (175)
T 2a19_A 13 PEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDK 77 (175)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEET
T ss_pred CCCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEEC
Confidence 55899999999999221111 10 1112468999999999999863
No 29
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=81.94 E-value=1 Score=30.53 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=28.8
Q ss_pred eeecCcEEEEEEEEecCCCce-----------ee--c-c--------ccceecCCCEEEEEEEEEEe
Q 048593 59 LPVKGEILHGVIHIAVCEQPF-----------FS--N-E--------QQAKIRNGLVVQFLVTAVQW 103 (150)
Q Consensus 59 rPf~gEVv~G~V~~v~~~~~~-----------~~--~-~--------~~~~i~~gd~VR~RI~~v~~ 103 (150)
.|..|++++|+|+ +.+-..+ +. + + ....+ .|+.|++||..+..
T Consensus 8 ~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~vd~ 72 (88)
T 1luz_A 8 LPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVDY 72 (88)
T ss_dssp CCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEET
T ss_pred CCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEEEC
Confidence 3899999999999 9222111 11 1 0 01246 99999999999874
No 30
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=81.62 E-value=0.93 Score=31.47 Aligned_cols=45 Identities=22% Similarity=0.121 Sum_probs=37.0
Q ss_pred eCCeeeeeCCCcceEEEEEEEEEE---e---eeecCcEEEEEEEEecCCCce
Q 048593 34 IGRERGTVNESGVVFFPVTFLCRT---F---LPVKGEILHGVIHIAVCEQPF 79 (150)
Q Consensus 34 i~~G~I~~~gdG~v~~~V~Fraiv---F---rPf~gEVv~G~V~~v~~~~~~ 79 (150)
-+-|.|.| .+|...+-|.+++|. | +|..|++++++|+++.+-..+
T Consensus 28 kGfGFI~~-~~gg~dvfvH~s~l~~~~~~~~~l~~Ge~V~g~V~~i~~fG~f 78 (101)
T 2bh8_A 28 KGFGFITP-DDGSKDVFVHFSAGSSGAAVRGNPQQGDRVEGKIKSITDFGIF 78 (101)
T ss_dssp GTEEEEEE-SSSSCEEEEECCCSCSSSCCCCCCCTTCEEEEEEEECCSEEEE
T ss_pred CCCEEEEe-CCCCcEEEEEEEEEecCCccccCCCCCCEEEEEEEEeCCcEEE
Confidence 46789999 899899999999998 4 788999999999988544433
No 31
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=76.41 E-value=4.5 Score=32.97 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=31.3
Q ss_pred eeecCcEEEEEEEEecCCCce-----------ee----------ccccceecCCCEEEEEEEEEEe
Q 048593 59 LPVKGEILHGVIHIAVCEQPF-----------FS----------NEQQAKIRNGLVVQFLVTAVQW 103 (150)
Q Consensus 59 rPf~gEVv~G~V~~v~~~~~~-----------~~----------~~~~~~i~~gd~VR~RI~~v~~ 103 (150)
.|..|+++.|+|+++.+-..+ +. .+....+++||.|++||..+..
T Consensus 8 ~p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~ 73 (275)
T 3aev_A 8 YPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDP 73 (275)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEET
T ss_pred CCCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEEC
Confidence 467899999999999222111 11 1112368999999999999874
No 32
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=73.79 E-value=6.2 Score=32.10 Aligned_cols=47 Identities=21% Similarity=0.231 Sum_probs=32.9
Q ss_pred eeeecCcEEEEEEEE----ecCCCceee-------------ccc---cceecCCCEEEEEEEEEEee
Q 048593 58 FLPVKGEILHGVIHI----AVCEQPFFS-------------NEQ---QAKIRNGLVVQFLVTAVQWI 104 (150)
Q Consensus 58 FrPf~gEVv~G~V~~----v~~~~~~~~-------------~~~---~~~i~~gd~VR~RI~~v~~~ 104 (150)
|+...||++.|+|.+ +...+..+. ..+ +..+++||.||+-|..++-.
T Consensus 3 ~~~r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqip~E~~~~GDrIkayV~~V~~~ 69 (251)
T 2asb_A 3 FSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRG 69 (251)
T ss_dssp -CCCTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSCTTCCCCTTCEEEEEEEEEECC
T ss_pred hhhcCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcCCCccCCCCCEEEEEEEEEEcC
Confidence 788899999999999 533322211 111 23699999999999999853
No 33
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=69.60 E-value=7.6 Score=32.22 Aligned_cols=44 Identities=14% Similarity=0.036 Sum_probs=30.4
Q ss_pred eecCcEEEEEEEEecCCCce-----------ee----------ccccceecCCCEEEEEEEEEEe
Q 048593 60 PVKGEILHGVIHIAVCEQPF-----------FS----------NEQQAKIRNGLVVQFLVTAVQW 103 (150)
Q Consensus 60 Pf~gEVv~G~V~~v~~~~~~-----------~~----------~~~~~~i~~gd~VR~RI~~v~~ 103 (150)
|-.|+++.|+|+++.+-..+ +. ++-...+++|+.|++||..+..
T Consensus 11 ~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~ 75 (308)
T 1q8k_A 11 PEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDK 75 (308)
T ss_dssp CSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEET
T ss_pred CCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeC
Confidence 56899999999999221111 11 1112358999999999999873
No 34
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=65.36 E-value=11 Score=32.20 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=32.1
Q ss_pred eeeecCcEEEEEEEE----ecCCCceee-------------ccc---cceecCCCEEEEEEEEEEe
Q 048593 58 FLPVKGEILHGVIHI----AVCEQPFFS-------------NEQ---QAKIRNGLVVQFLVTAVQW 103 (150)
Q Consensus 58 FrPf~gEVv~G~V~~----v~~~~~~~~-------------~~~---~~~i~~gd~VR~RI~~v~~ 103 (150)
|+.-.||++.|+|.+ +...+.++. ..+ +..+++||.||+-|..|+-
T Consensus 126 f~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~EqiP~E~~~~GDrVkvyV~~V~~ 191 (366)
T 1k0r_A 126 FSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTR 191 (366)
T ss_dssp -CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSCTTCCCCTTCEEEEEEEEEEC
T ss_pred HHhcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcCCCccCCCCCEEEEEEEEEec
Confidence 567789999999999 633222211 111 2369999999999999985
No 35
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=61.95 E-value=0.26 Score=45.82 Aligned_cols=78 Identities=14% Similarity=0.115 Sum_probs=29.4
Q ss_pred CCceEEEEEeeeceeCCeeeeeC-CCcceEEEE--EEEEEE--eeeecCcEEEEEEEEecCCCcee--------------
Q 048593 20 KDQCYFLSVTNLKSIGRERGTVN-ESGVVFFPV--TFLCRT--FLPVKGEILHGVIHIAVCEQPFF-------------- 80 (150)
Q Consensus 20 ~~~GliV~V~di~~i~~G~I~~~-gdG~v~~~V--~Fraiv--FrPf~gEVv~G~V~~v~~~~~~~-------------- 80 (150)
.+.|..| ||.+ +|.|.-. .++...... ..+.++ ..|..|++++|+|+++.+-..++
T Consensus 625 ~~~G~~I---dI~~--dG~v~Is~~~~~~~~~a~~~i~~i~~p~~~~vG~i~~G~V~~i~~fGaFV~l~~g~eGLvHiSe 699 (757)
T 1e3p_A 625 EDTGAEI---TIED--DGTIYIGAADGPAAEAARATINGIANPTSPEVGERILGSVVKTTTFGAFVSLLPGKDGLLHISQ 699 (757)
T ss_dssp CCCCSCC-------------CCCBSSHHHHCC---------------------CBEEECC-CSCEECCC---CCCCC---
T ss_pred HhhCCEE---EecC--CceEEEecCCHHHHHHHHHHHHHhcchhhcccccEEEEEEEEccccEEEEEEcCCcEEEEEhHH
Confidence 4667665 4444 5555530 444433333 456777 89999999999999992221111
Q ss_pred ---------eccccceecCCCEEEEEEEEEE
Q 048593 81 ---------SNEQQAKIRNGLVVQFLVTAVQ 102 (150)
Q Consensus 81 ---------~~~~~~~i~~gd~VR~RI~~v~ 102 (150)
.++-...++.||.|++||..+.
T Consensus 700 l~~~~s~~rv~~~~~~~~vGd~V~VkVi~vd 730 (757)
T 1e3p_A 700 IRKLAGGKRVENVEDVLGVGQKVQVEIAEID 730 (757)
T ss_dssp ----------------CCSSCBCCCCCCCCC
T ss_pred hccccCCCcccCcccccCCCCEEEEEEEEEC
Confidence 0111236899999999999876
No 36
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=59.77 E-value=15 Score=31.07 Aligned_cols=45 Identities=16% Similarity=0.173 Sum_probs=31.5
Q ss_pred eeecCcEEEEEEEEecCCCceee---------cc---ccceecCCCEEEEEEEEEEe
Q 048593 59 LPVKGEILHGVIHIAVCEQPFFS---------NE---QQAKIRNGLVVQFLVTAVQW 103 (150)
Q Consensus 59 rPf~gEVv~G~V~~v~~~~~~~~---------~~---~~~~i~~gd~VR~RI~~v~~ 103 (150)
+.-.|+++.|+|.++...+.++. .. .+..+.+||.|++.|..+.-
T Consensus 131 ~~~~GeIV~G~V~ri~~~~v~VDlGk~EgiLp~sE~ip~E~~~vGD~Vkv~V~~V~~ 187 (344)
T 1hh2_P 131 SELKGTVTTAEVIRVMGEWADIRIGKLETRLPKKEWIPGEEIKAGDLVKVYIIDVVK 187 (344)
T ss_dssp TCCTTCEEEEEEEEECSSEEEEEETTEEEEEEGGGSCTTCCCCTTCEEEEEEEEEEE
T ss_pred hhcCCCEEEEEEEEEecCcEEEEeCCeEEEEeHHHcCCCcCCCCCCEEEEEEEEEEc
Confidence 34459999999999954432221 11 12368999999999999884
No 37
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=57.69 E-value=5.4 Score=32.23 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=31.0
Q ss_pred eeecCcEEEEEEEEecCCCceeec---------------------cccceecCCCEEEEEEEEEE
Q 048593 59 LPVKGEILHGVIHIAVCEQPFFSN---------------------EQQAKIRNGLVVQFLVTAVQ 102 (150)
Q Consensus 59 rPf~gEVv~G~V~~v~~~~~~~~~---------------------~~~~~i~~gd~VR~RI~~v~ 102 (150)
.|..|+++.|+|+++.+...++.- +-...++.|+.|++||..+.
T Consensus 8 ~~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd 72 (266)
T 3cw2_C 8 LPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVD 72 (266)
T ss_dssp SCCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCC
T ss_pred cCCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEe
Confidence 478999999999999332222110 00135899999999999975
No 38
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=56.33 E-value=23 Score=28.78 Aligned_cols=42 Identities=17% Similarity=0.123 Sum_probs=31.3
Q ss_pred cCcEEEEEEEEecCCCcee-e-----------ccccceecCCCEEEEEEEEEEe
Q 048593 62 KGEILHGVIHIAVCEQPFF-S-----------NEQQAKIRNGLVVQFLVTAVQW 103 (150)
Q Consensus 62 ~gEVv~G~V~~v~~~~~~~-~-----------~~~~~~i~~gd~VR~RI~~v~~ 103 (150)
.|++++|+|.++.+-..+. . ++-...++.|+.|.+||..++-
T Consensus 152 ~G~~V~g~V~~i~~~G~fV~~i~~g~~Glih~SEl~~~l~~Gd~v~~~V~~id~ 205 (285)
T 3go5_A 152 QNQNWPAIVYRLKLSGTFVYLPENNMLGFIHPSERYAEPRLGQVLDARVIGFRE 205 (285)
T ss_dssp TTCEEEEEEEEEETTEEEEEETTTTEEEEECGGGCSSCCCTTCEEEEEEEEEET
T ss_pred CCCEEEEEEEEEeCCcEEEEEeCCCeEEEEEHHHccccCCCCCEEEEEEEEEEC
Confidence 6899999999995444443 2 1112369999999999999984
No 39
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=55.39 E-value=14 Score=36.25 Aligned_cols=44 Identities=11% Similarity=0.028 Sum_probs=30.3
Q ss_pred eecCcEEEEEEEEecCCCcee--------------------eccccceecCCCEEEEEEEEEEe
Q 048593 60 PVKGEILHGVIHIAVCEQPFF--------------------SNEQQAKIRNGLVVQFLVTAVQW 103 (150)
Q Consensus 60 Pf~gEVv~G~V~~v~~~~~~~--------------------~~~~~~~i~~gd~VR~RI~~v~~ 103 (150)
...|+++.|+|+++.+-..++ ..+-...+++|+.|++||+.+..
T Consensus 900 l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~ 963 (1219)
T 3psi_A 900 FFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDY 963 (1219)
T ss_dssp SCTTCEEEEEEEEECSSCEEEECTTSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEG
T ss_pred CCCCCEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEEC
Confidence 457999999999992222111 11112368999999999999864
No 40
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=43.01 E-value=35 Score=30.67 Aligned_cols=18 Identities=11% Similarity=0.139 Sum_probs=16.0
Q ss_pred ceecCCCEEEEEEEEEEe
Q 048593 86 AKIRNGLVVQFLVTAVQW 103 (150)
Q Consensus 86 ~~i~~gd~VR~RI~~v~~ 103 (150)
..++.||.|++||..+..
T Consensus 616 ~~~~lGD~V~VkV~~vd~ 633 (644)
T 2id0_A 616 TVYKVTDVIDVTIAEVRM 633 (644)
T ss_dssp EEEETTCEEEEEEEEEET
T ss_pred CEeCCCCEEEEEEEEEeC
Confidence 468999999999999875
No 41
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=35.27 E-value=9.3 Score=35.64 Aligned_cols=44 Identities=23% Similarity=0.331 Sum_probs=28.6
Q ss_pred eecCcEEEEEEEEecCCCce-------------------eeccccceecCCCEEEEEEEEEEe
Q 048593 60 PVKGEILHGVIHIAVCEQPF-------------------FSNEQQAKIRNGLVVQFLVTAVQW 103 (150)
Q Consensus 60 Pf~gEVv~G~V~~v~~~~~~-------------------~~~~~~~~i~~gd~VR~RI~~v~~ 103 (150)
...|++++|+|+++.+-..+ |..+....+++||.|++||..+..
T Consensus 652 l~vG~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~VD~ 714 (785)
T 3bzc_A 652 LKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDI 714 (785)
T ss_dssp CCTTCBCCCEEEEEETTEEEEECSSSSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEET
T ss_pred cCCCCEEEEEEEEEecCCeEEEeCCCcEEEEEHHHcCccccCChhheeCCCCEEEEEEEEEEC
Confidence 45677788888777211111 112223469999999999999874
No 42
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=30.09 E-value=11 Score=36.27 Aligned_cols=43 Identities=12% Similarity=0.052 Sum_probs=0.0
Q ss_pred ecCcEEEEEEEEecCCCc--------------------eeeccccceecCCCEEEEEEEEEEe
Q 048593 61 VKGEILHGVIHIAVCEQP--------------------FFSNEQQAKIRNGLVVQFLVTAVQW 103 (150)
Q Consensus 61 f~gEVv~G~V~~v~~~~~--------------------~~~~~~~~~i~~gd~VR~RI~~v~~ 103 (150)
..|+++.|+|+++.+-.. ++..+-...+++|+.|++||..+..
T Consensus 904 ~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~ 966 (1030)
T 3psf_A 904 FKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDY 966 (1030)
T ss_dssp ---------------------------------------------------------------
T ss_pred cCCCEEEEEEEEEccCeEEEEeCCCcEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEEC
Confidence 468888888888711111 1111222469999999999999864
No 43
>1yez_A MM1357; MAR30, autostructure, northeast structural genomics, PSI, PR structure initiative, northeast structural genomics consort NESG; NMR {Methanosarcina mazei} SCOP: b.40.4.12
Probab=22.76 E-value=1.2e+02 Score=18.81 Aligned_cols=41 Identities=17% Similarity=0.072 Sum_probs=21.1
Q ss_pred cCcEEEEEEEEecCCCceeeccccc--e---ecCCCEEEEEEEEEE
Q 048593 62 KGEILHGVIHIAVCEQPFFSNEQQA--K---IRNGLVVQFLVTAVQ 102 (150)
Q Consensus 62 ~gEVv~G~V~~v~~~~~~~~~~~~~--~---i~~gd~VR~RI~~v~ 102 (150)
+|+.++.+|.+....+.-+...++. . --+|+.|++||...+
T Consensus 13 ~~~~~~~~I~~l~~~G~Gva~~~g~~vfV~~alPGE~V~v~i~k~k 58 (68)
T 1yez_A 13 EGEVYDVTIQDIARQGDGIARIEGFVIFVPGTKVGDEVRIKVERVL 58 (68)
T ss_dssp TTEEEEEECCEEETTTEEEEEETTEEEEEESCCTTCEEEEEEEEEC
T ss_pred CCCEEEEEEEEcCCCccEEEEECCEEEECcCCCCCCEEEEEEEEec
Confidence 5667776666663222211111111 1 146888888887643
No 44
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=20.65 E-value=1.1e+02 Score=19.98 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=17.2
Q ss_pred eeccccceecCCCEEEEEEEEEE
Q 048593 80 FSNEQQAKIRNGLVVQFLVTAVQ 102 (150)
Q Consensus 80 ~~~~~~~~i~~gd~VR~RI~~v~ 102 (150)
|..-++..+++|+.|+||+....
T Consensus 5 fi~tDr~iYrPGetV~~~~~~~~ 27 (102)
T 2p9r_A 5 FVQTDKSIYKPGQTVKFRVVSMD 27 (102)
T ss_dssp EEEESCSEECTTCEEEEEEEEEC
T ss_pred EEECCCcccCCCCEEEEEEEEEC
Confidence 33334457899999999999864
Done!