Query 048596
Match_columns 96
No_of_seqs 52 out of 54
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 11:01:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048596.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048596hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08259 Periviscerokin: Periv 35.3 16 0.00035 17.0 0.4 6 15-20 1-6 (11)
2 PF14703 DUF4463: Domain of un 27.0 38 0.00083 21.1 1.2 15 79-93 53-67 (85)
3 PF07188 KSHV_K8: Kaposi's sar 26.4 37 0.00081 26.9 1.3 15 73-87 173-189 (238)
4 PF09083 DUF1923: Domain of un 26.4 17 0.00038 24.1 -0.5 13 16-28 37-49 (64)
5 COG5636 Uncharacterized conser 23.8 34 0.00073 28.2 0.6 13 83-95 235-247 (284)
6 PF05093 CIAPIN1: Cytokine-ind 23.8 35 0.00075 24.2 0.6 13 84-96 65-77 (100)
7 KOG3456 NADH:ubiquinone oxidor 22.6 40 0.00086 24.9 0.7 16 78-95 98-113 (120)
8 PF05129 Elf1: Transcription e 20.9 33 0.00072 22.8 0.1 15 79-93 15-29 (81)
9 cd04120 Rab12 Rab12 subfamily. 20.2 65 0.0014 23.6 1.5 17 73-89 186-202 (202)
10 COG1032 Fe-S oxidoreductase [E 18.0 49 0.0011 25.7 0.4 8 88-95 211-218 (490)
No 1
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects. They mediate visceral muscle contractile activity (myotropic activity). CAPA, which are in the periviscerokinin and pyrokinin peptide families, has potential medical importance. This is due to its myotropic effects on, for example, heart muscles and due to its occurrence in the Ixodoidea (ticks), which are important vectors in the transmission of many animal diseases []. These peptides also have a strong diuretic or anti-diuretic effect, suggesting they have significant medical implications [].
Probab=35.31 E-value=16 Score=17.01 Aligned_cols=6 Identities=83% Similarity=1.370 Sum_probs=4.0
Q ss_pred CCCccc
Q 048596 15 GSSGLV 20 (96)
Q Consensus 15 GSSG~v 20 (96)
||||++
T Consensus 1 gssGlI 6 (11)
T PF08259_consen 1 GSSGLI 6 (11)
T ss_pred CCcccc
Confidence 677775
No 2
>PF14703 DUF4463: Domain of unknown function (DUF4463)
Probab=27.04 E-value=38 Score=21.08 Aligned_cols=15 Identities=7% Similarity=-0.099 Sum_probs=13.1
Q ss_pred CCCCCCCccceeecc
Q 048596 79 IDPPSPKVSGCWFCC 93 (96)
Q Consensus 79 lDPPSPkVs~CgFC~ 93 (96)
..+|.++...|+||+
T Consensus 53 ~~~~~~~~~~~~~~g 67 (85)
T PF14703_consen 53 KKRPRHRTGFLGLFG 67 (85)
T ss_pred ccCCCCCCCcCCCCC
Confidence 678899999999998
No 3
>PF07188 KSHV_K8: Kaposi's sarcoma-associated herpesvirus (KSHV) K8 protein; InterPro: IPR010805 This family consists of Human herpesvirus 8 (HHV-8, Kaposi's sarcoma-associated herpesvirus) K8 proteins. HHV-8 is a human Gammaherpesvirus related to Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) and Saimiriine herpesvirus 2 (Herpesvirus saimiri). HHV-8 open reading frame K8 encodes a basic region-leucine zipper protein of 237 aa that homodimerises. K8 interacts and co-localises with human SNF5 (IPR006939 from INTERPRO), a cellular chromatin-remodelling factor, both in vivo and in vitro. K8 is thought to function as a transcriptional activator under specific conditions and its transactivation activity requires its interaction with the cellular chromatin remodelling factor hSNF5 [].
Probab=26.41 E-value=37 Score=26.93 Aligned_cols=15 Identities=47% Similarity=0.999 Sum_probs=10.9
Q ss_pred cccCC--CCCCCCCCcc
Q 048596 73 SKVLP--DIDPPSPKVS 87 (96)
Q Consensus 73 ~~V~P--alDPPSPkVs 87 (96)
|+.-| .|-||||||-
T Consensus 173 gdavpaapitppsprvq 189 (238)
T PF07188_consen 173 GDAVPAAPITPPSPRVQ 189 (238)
T ss_pred cCccccCCCCCCCcccc
Confidence 44444 3999999985
No 4
>PF09083 DUF1923: Domain of unknown function (DUF1923); InterPro: IPR015167 This domain is found in maltosyltransferases, adopting a secondary structure that consists of eight antiparallel beta-strands forming an open-sided 'jelly roll' Greek key beta-barrel. Their exact function is, as yet, unknown []. ; PDB: 1GJW_A 1GJU_A.
Probab=26.37 E-value=17 Score=24.06 Aligned_cols=13 Identities=31% Similarity=0.667 Sum_probs=9.8
Q ss_pred CCccccccccccc
Q 048596 16 SSGLVWQDAFISG 28 (96)
Q Consensus 16 SSG~vWdd~~~~~ 28 (96)
|-|+|||.+|--.
T Consensus 37 sggrvw~g~w~~~ 49 (64)
T PF09083_consen 37 SGGRVWNGRWSDK 49 (64)
T ss_dssp EEEEEESSSEEEE
T ss_pred cCceeecCccccc
Confidence 4689999997543
No 5
>COG5636 Uncharacterized conserved protein, contains Zn-ribbon-like motif [Function unknown]
Probab=23.83 E-value=34 Score=28.21 Aligned_cols=13 Identities=46% Similarity=0.738 Sum_probs=11.7
Q ss_pred CCCccceeeccCC
Q 048596 83 SPKVSGCWFCCPG 95 (96)
Q Consensus 83 SPkVs~CgFC~i~ 95 (96)
+-+|++||-|.+|
T Consensus 235 ~K~Vs~CGnCylG 247 (284)
T COG5636 235 GKKVSACGNCYLG 247 (284)
T ss_pred ccccccccccccc
Confidence 7789999999987
No 6
>PF05093 CIAPIN1: Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis; InterPro: IPR007785 Anamorsin, subsequently named CIAPIN1 for cytokine-induced anti-apoptosis inhibitor 1, in humans is the homologue of yeast Dre2, a conserved soluble eukaryotic Fe-S cluster protein, that functions in cytosolic Fe-S protein biogenesis. It is found in both the cytoplasm and in the mitochondrial intermembrane space (IMS) []. CIAPIN1 is found to be up-regulated in hepatocellular cancer, is considered to be a downstream effector of the receptor tyrosine kinase-Ras signalling pathway, and is essential in mouse definitive haematopoiesis []. In addition, it has also anti-apoptotic effects in the cell. It is involved in negative control of cell death upon cytokine withdrawal and promotes development of hematopoietic cells [].
Probab=23.79 E-value=35 Score=24.17 Aligned_cols=13 Identities=38% Similarity=0.590 Sum_probs=10.5
Q ss_pred CCccceeeccCCC
Q 048596 84 PKVSGCWFCCPGK 96 (96)
Q Consensus 84 PkVs~CgFC~i~~ 96 (96)
.++++||.|.+|.
T Consensus 65 ~~~ssCGsC~LGD 77 (100)
T PF05093_consen 65 GKKSSCGSCYLGD 77 (100)
T ss_pred cccCccccccccc
Confidence 5569999999873
No 7
>KOG3456 consensus NADH:ubiquinone oxidoreductase, NDUFS6/13 kDa subunit [Energy production and conversion]
Probab=22.62 E-value=40 Score=24.86 Aligned_cols=16 Identities=31% Similarity=0.808 Sum_probs=12.0
Q ss_pred CCCCCCCCccceeeccCC
Q 048596 78 DIDPPSPKVSGCWFCCPG 95 (96)
Q Consensus 78 alDPPSPkVs~CgFC~i~ 95 (96)
.||-|-| ..||+|++.
T Consensus 98 nLDk~~~--~~CgYCGlr 113 (120)
T KOG3456|consen 98 NLDKPGP--HICGYCGLR 113 (120)
T ss_pred EcCCCCC--cccccchhh
Confidence 5676666 789999973
No 8
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=20.91 E-value=33 Score=22.77 Aligned_cols=15 Identities=47% Similarity=0.844 Sum_probs=4.8
Q ss_pred CCCCCCCccceeecc
Q 048596 79 IDPPSPKVSGCWFCC 93 (96)
Q Consensus 79 lDPPSPkVs~CgFC~ 93 (96)
--++-|+++-|-||+
T Consensus 15 ~~~~l~~~F~CPfC~ 29 (81)
T PF05129_consen 15 KKPKLPKVFDCPFCN 29 (81)
T ss_dssp -----SS----TTT-
T ss_pred cCCCCCceEcCCcCC
Confidence 345678999999998
No 9
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=20.16 E-value=65 Score=23.56 Aligned_cols=17 Identities=35% Similarity=0.993 Sum_probs=14.4
Q ss_pred cccCCCCCCCCCCccce
Q 048596 73 SKVLPDIDPPSPKVSGC 89 (96)
Q Consensus 73 ~~V~PalDPPSPkVs~C 89 (96)
-.++|.+-||-|.|-.|
T Consensus 186 ~~~~~~~~~~~~~~~~~ 202 (202)
T cd04120 186 PEIPPELPPPRPHVRCC 202 (202)
T ss_pred CCCCcCCCCCCCCcccC
Confidence 45888999999999877
No 10
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=18.03 E-value=49 Score=25.71 Aligned_cols=8 Identities=50% Similarity=1.307 Sum_probs=6.5
Q ss_pred ceeeccCC
Q 048596 88 GCWFCCPG 95 (96)
Q Consensus 88 ~CgFC~i~ 95 (96)
+|.||++.
T Consensus 211 ~C~FC~~~ 218 (490)
T COG1032 211 GCRFCSIT 218 (490)
T ss_pred CCCCCCCc
Confidence 58899975
Done!