Query 048596
Match_columns 96
No_of_seqs 52 out of 54
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 19:14:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048596.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048596hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y29_A Huwentoxin-X; A double- 36.2 13 0.00044 20.5 0.9 14 83-96 13-26 (28)
2 1wii_A Hypothetical UPF0222 pr 28.1 21 0.00073 23.3 1.2 15 81-95 18-32 (85)
3 2wja_A Putative acid phosphata 26.8 14 0.00048 25.8 0.1 15 15-29 10-24 (168)
4 2d3o_1 Trigger factor, TF; rib 23.1 24 0.00083 22.9 0.7 12 68-79 41-52 (112)
5 2ezv_A Type II restriction enz 21.9 25 0.00086 27.6 0.7 23 2-24 110-135 (269)
6 2cpw_A CBL-interacting protein 21.6 29 0.00099 21.0 0.8 14 14-27 3-16 (64)
7 4gh9_A Polymerase cofactor VP3 20.8 34 0.0011 24.9 1.1 11 81-91 121-134 (146)
8 1uvq_C Orexin; immunology, MHC 16.4 47 0.0016 18.7 0.8 10 78-87 5-14 (33)
9 2qu8_A Putative nucleolar GTP- 15.1 38 0.0013 22.7 0.3 29 68-96 14-42 (228)
10 1i8o_A Cytochrome C2; electron 14.7 24 0.00081 22.1 -0.8 17 14-30 51-67 (114)
No 1
>1y29_A Huwentoxin-X; A double-stranded beta-sheet, ICK, knottin; NMR {Synthetic} SCOP: g.3.6.2
Probab=36.16 E-value=13 Score=20.51 Aligned_cols=14 Identities=29% Similarity=0.660 Sum_probs=11.1
Q ss_pred CCCccceeeccCCC
Q 048596 83 SPKVSGCWFCCPGK 96 (96)
Q Consensus 83 SPkVs~CgFC~i~~ 96 (96)
--||+.||-|+-+|
T Consensus 13 ~~riPCCG~Cs~nk 26 (28)
T 1y29_A 13 TQKIPCCGVCSHNK 26 (28)
T ss_dssp CCSCCBSSCBSSSC
T ss_pred ccccccccccccCc
Confidence 35899999998765
No 2
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=28.13 E-value=21 Score=23.29 Aligned_cols=15 Identities=20% Similarity=0.266 Sum_probs=13.3
Q ss_pred CCCCCccceeeccCC
Q 048596 81 PPSPKVSGCWFCCPG 95 (96)
Q Consensus 81 PPSPkVs~CgFC~i~ 95 (96)
+|-|+++-|-||+-.
T Consensus 18 ~~L~t~F~CPfCnh~ 32 (85)
T 1wii_A 18 GTLETQFTCPFCNHE 32 (85)
T ss_dssp CCCSSCCCCTTTCCS
T ss_pred CCCCCeEcCCCCCCC
Confidence 799999999999854
No 3
>2wja_A Putative acid phosphatase WZB; hydrolase; 2.50A {Escherichia coli}
Probab=26.79 E-value=14 Score=25.81 Aligned_cols=15 Identities=33% Similarity=0.293 Sum_probs=5.9
Q ss_pred CCCccccccccccch
Q 048596 15 GSSGLVWQDAFISGD 29 (96)
Q Consensus 15 GSSG~vWdd~~~~~~ 29 (96)
-|||+||+-..+...
T Consensus 10 ~~~~~~~~~~~~~~~ 24 (168)
T 2wja_A 10 HSSGLVPRGSHMAKL 24 (168)
T ss_dssp ------CCCSHHHHH
T ss_pred cccCCCcchHhHHhh
Confidence 489999998665543
No 4
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=23.13 E-value=24 Score=22.89 Aligned_cols=12 Identities=25% Similarity=0.246 Sum_probs=10.0
Q ss_pred cceeecccCCCC
Q 048596 68 IIFRTSKVLPDI 79 (96)
Q Consensus 68 ~~yRT~~V~Pal 79 (96)
.|||-|+|+.+|
T Consensus 41 pGFRkGKvP~~v 52 (112)
T 2d3o_1 41 PGFRPGKAPRKV 52 (112)
T ss_dssp TTBCTTCCCSTT
T ss_pred CCcCCCCCCHHH
Confidence 789999998753
No 5
>2ezv_A Type II restriction enzyme SFII; type IIF restriction endonuclease, protein/DNA complex, hydrolase/DNA complex; 2.40A {Synthetic} PDB: 2f03_A*
Probab=21.85 E-value=25 Score=27.64 Aligned_cols=23 Identities=39% Similarity=0.426 Sum_probs=19.4
Q ss_pred Cccccccceee---ccCCCccccccc
Q 048596 2 ATFQRSEVSFR---RQGSSGLVWQDA 24 (96)
Q Consensus 2 a~LQRSs~sFR---RqGSSG~vWdd~ 24 (96)
|+||+|..+.+ ||-+||-|=+=.
T Consensus 110 aTlQ~SQlsM~~~vrq~rsG~~v~~~ 135 (269)
T 2ezv_A 110 DTLQRSQLPMDAEFRNTSSGEVVTME 135 (269)
T ss_dssp EEECGGGCCSCEEEECTTTCSEEEEC
T ss_pred eEeeeeccchHHHHhhccCCceEEEe
Confidence 68999999988 899999876544
No 6
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.62 E-value=29 Score=20.97 Aligned_cols=14 Identities=36% Similarity=0.193 Sum_probs=12.1
Q ss_pred cCCCcccccccccc
Q 048596 14 QGSSGLVWQDAFIS 27 (96)
Q Consensus 14 qGSSG~vWdd~~~~ 27 (96)
+||||+.|...+..
T Consensus 3 ~~~~~r~~t~~ya~ 16 (64)
T 2cpw_A 3 SGSSGRNRQQRPGT 16 (64)
T ss_dssp CCCCSCCSCCSSCS
T ss_pred CCCccchhhhcccc
Confidence 69999999998764
No 7
>4gh9_A Polymerase cofactor VP35; viral polymerase, interferon inhibition, double stranded VIR viral protein,RNA binding protein; 1.65A {Marburg virus}
Probab=20.82 E-value=34 Score=24.88 Aligned_cols=11 Identities=36% Similarity=1.153 Sum_probs=8.8
Q ss_pred CCCCCcc---ceee
Q 048596 81 PPSPKVS---GCWF 91 (96)
Q Consensus 81 PPSPkVs---~CgF 91 (96)
|||||+- .|.|
T Consensus 121 PPsPkIDrGWvcif 134 (146)
T 4gh9_A 121 PPNPTIDKGWVCVY 134 (146)
T ss_dssp CSSCCGGGTEEEEE
T ss_pred CcCCccccceEEEE
Confidence 8999998 4665
No 8
>1uvq_C Orexin; immunology, MHC class II, diabetes, narcolepsy, autoimmune disease, structural proteomics in europe, spine, structural genomics; HET: NAG FUC BMA; 1.8A {Homo sapiens}
Probab=16.36 E-value=47 Score=18.67 Aligned_cols=10 Identities=50% Similarity=0.720 Sum_probs=8.8
Q ss_pred CCCCCCCCcc
Q 048596 78 DIDPPSPKVS 87 (96)
Q Consensus 78 alDPPSPkVs 87 (96)
.|.|||-||+
T Consensus 5 sMN~pSTKVs 14 (33)
T 1uvq_C 5 SMNLPSTKVS 14 (33)
T ss_pred ccCCCccccc
Confidence 5889999998
No 9
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=15.05 E-value=38 Score=22.68 Aligned_cols=29 Identities=21% Similarity=0.017 Sum_probs=18.4
Q ss_pred cceeecccCCCCCCCCCCccceeeccCCC
Q 048596 68 IIFRTSKVLPDIDPPSPKVSGCWFCCPGK 96 (96)
Q Consensus 68 ~~yRT~~V~PalDPPSPkVs~CgFC~i~~ 96 (96)
+.+..-+-.|.+|+..+||.-+|-.+.||
T Consensus 14 ~~~~~~~~~P~~~~~~~kI~vvG~~~vGK 42 (228)
T 2qu8_A 14 RENLYFQGLPSINPHKKTIILSGAPNVGK 42 (228)
T ss_dssp --------CCSCCTTSEEEEEECSTTSSH
T ss_pred chhheeccCCCCCCCCCEEEEECCCCCCH
Confidence 55555556688899999999999888886
No 10
>1i8o_A Cytochrome C2; electron transport, heme, ammonia, oxidized; HET: HEC; 1.15A {Rhodopseudomonas palustris} SCOP: a.3.1.1 PDB: 1fj0_A* 1hh7_A* 1i8p_A*
Probab=14.69 E-value=24 Score=22.07 Aligned_cols=17 Identities=41% Similarity=0.691 Sum_probs=12.6
Q ss_pred cCCCccccccccccchh
Q 048596 14 QGSSGLVWQDAFISGDL 30 (96)
Q Consensus 14 qGSSG~vWdd~~~~~~~ 30 (96)
-|++|++|++..|..-+
T Consensus 51 ~~~~g~~w~~~~L~~~l 67 (114)
T 1i8o_A 51 SGEAGLVWTADNIVPYL 67 (114)
T ss_dssp HHHTTCBCCHHHHHHHH
T ss_pred ccccCccccHHHHHHHH
Confidence 36789999988766543
Done!