Query 048596
Match_columns 96
No_of_seqs 52 out of 54
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 19:14:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048596.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048596hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wjva1 g.37.1.2 (A:1-35) Cell 31.6 6.7 0.00049 21.2 0.7 8 14-21 3-10 (35)
2 d1wiia_ g.41.3.4 (A:) Hypothet 30.8 17 0.0012 22.5 2.6 24 71-94 6-31 (85)
3 d1y29a_ g.3.6.2 (A:) Huwentoxi 30.5 8.5 0.00062 19.8 0.9 14 83-96 13-26 (28)
4 d1gjwa1 b.71.1.1 (A:573-636) M 23.4 6.4 0.00046 23.6 -0.5 13 16-28 37-49 (64)
5 d1w2za1 b.30.2.1 (A:207-647) C 19.1 18 0.0013 27.5 1.2 18 75-92 424-441 (441)
6 d1v6ga1 g.39.1.3 (A:1-41) Acti 11.3 39 0.0029 18.4 0.9 12 14-25 3-14 (41)
7 d1wfpa_ g.80.1.1 (A:) Zinc fin 10.7 61 0.0044 19.3 1.8 19 75-93 14-32 (74)
8 d1cota_ a.3.1.1 (A:) Cytochrom 9.4 32 0.0024 20.4 0.1 15 16-30 65-79 (121)
9 d1p9ya_ d.241.2.1 (A:) Trigger 8.9 38 0.0028 20.5 0.3 10 68-77 42-51 (117)
10 d1t3qa1 a.56.1.1 (A:88-168) Qu 8.9 34 0.0025 20.5 0.0 9 86-94 17-25 (81)
No 1
>d1wjva1 g.37.1.2 (A:1-35) Cell growth regulating nucleolar protein LyaR {Mouse (Mus musculus) [TaxId: 10090]}
Probab=31.57 E-value=6.7 Score=21.22 Aligned_cols=8 Identities=63% Similarity=1.149 Sum_probs=6.9
Q ss_pred cCCCcccc
Q 048596 14 QGSSGLVW 21 (96)
Q Consensus 14 qGSSG~vW 21 (96)
+||||||+
T Consensus 3 ~~~s~MVf 10 (35)
T d1wjva1 3 SGSSGMVF 10 (35)
T ss_dssp SSSCCCCE
T ss_pred CCcceEEE
Confidence 69999986
No 2
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.75 E-value=17 Score=22.52 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=17.6
Q ss_pred eecccCCC--CCCCCCCccceeeccC
Q 048596 71 RTSKVLPD--IDPPSPKVSGCWFCCP 94 (96)
Q Consensus 71 RT~~V~Pa--lDPPSPkVs~CgFC~i 94 (96)
++++-+|. .-+|-|+++-|-||+-
T Consensus 6 s~rk~~pkkk~~~kL~t~F~CPfCnh 31 (85)
T d1wiia_ 6 SGRKPPPKKKMTGTLETQFTCPFCNH 31 (85)
T ss_dssp CCCCCCCCCCCCCCCSSCCCCTTTCC
T ss_pred cCCCCCCCccccCCCCceEcCCCCCC
Confidence 45555554 3468999999999984
No 3
>d1y29a_ g.3.6.2 (A:) Huwentoxin-X {Spider (Selenocosmia hainana) [TaxId: 209901]}
Probab=30.48 E-value=8.5 Score=19.75 Aligned_cols=14 Identities=29% Similarity=0.660 Sum_probs=10.8
Q ss_pred CCCccceeeccCCC
Q 048596 83 SPKVSGCWFCCPGK 96 (96)
Q Consensus 83 SPkVs~CgFC~i~~ 96 (96)
.-|++.||.|+-.|
T Consensus 13 tqkipccgvcshnk 26 (28)
T d1y29a_ 13 TQKIPCCGVCSHNK 26 (28)
T ss_dssp CCSCCBSSCBSSSC
T ss_pred cccccceeeecccc
Confidence 45888999998654
No 4
>d1gjwa1 b.71.1.1 (A:573-636) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]}
Probab=23.40 E-value=6.4 Score=23.64 Aligned_cols=13 Identities=23% Similarity=0.662 Sum_probs=9.9
Q ss_pred CCccccccccccc
Q 048596 16 SSGLVWQDAFISG 28 (96)
Q Consensus 16 SSG~vWdd~~~~~ 28 (96)
+-|+|||.+|-.+
T Consensus 37 tggrvw~gkw~d~ 49 (64)
T d1gjwa1 37 TGGRVWNGKWSDE 49 (64)
T ss_dssp EEEEEESSSEEEE
T ss_pred cCceeecCccccc
Confidence 4589999997544
No 5
>d1w2za1 b.30.2.1 (A:207-647) Copper amine oxidase, domain 3 {Pea seedling (Pisum sativum) [TaxId: 3888]}
Probab=19.06 E-value=18 Score=27.46 Aligned_cols=18 Identities=22% Similarity=0.191 Sum_probs=14.9
Q ss_pred cCCCCCCCCCCccceeec
Q 048596 75 VLPDIDPPSPKVSGCWFC 92 (96)
Q Consensus 75 V~PalDPPSPkVs~CgFC 92 (96)
--|+||-|+|+=.+|.-|
T Consensus 424 ~nPald~~~~~~~~~~~~ 441 (441)
T d1w2za1 424 RNPVLKTLSPRDVAWPGC 441 (441)
T ss_dssp SCTTTTCCCCCCCCTTCC
T ss_pred CCCccCCCCcccccCCCC
Confidence 357999899999888877
No 6
>d1v6ga1 g.39.1.3 (A:1-41) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.34 E-value=39 Score=18.37 Aligned_cols=12 Identities=50% Similarity=0.814 Sum_probs=7.9
Q ss_pred cCCCcccccccc
Q 048596 14 QGSSGLVWQDAF 25 (96)
Q Consensus 14 qGSSG~vWdd~~ 25 (96)
+||||+-...+|
T Consensus 3 ~~~~~~DYq~~f 14 (41)
T d1v6ga1 3 SGSSGLDYQRLY 14 (41)
T ss_dssp CCCCCSCGGGSC
T ss_pred CCcccccHHHHh
Confidence 688888655544
No 7
>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=10.72 E-value=61 Score=19.32 Aligned_cols=19 Identities=26% Similarity=0.704 Sum_probs=14.5
Q ss_pred cCCCCCCCCCCccceeecc
Q 048596 75 VLPDIDPPSPKVSGCWFCC 93 (96)
Q Consensus 75 V~PalDPPSPkVs~CgFC~ 93 (96)
..++++||-.+-.-|.+|.
T Consensus 14 ~~~p~~~~k~kk~RC~~C~ 32 (74)
T d1wfpa_ 14 AAAPLDPPKSTATRCLSCN 32 (74)
T ss_dssp CCCCSCCTTCCCCBCSSSC
T ss_pred ccCCCCCCCCCCCcChhcC
Confidence 4456788888888899986
No 8
>d1cota_ a.3.1.1 (A:) Cytochrome c2 {Paracoccus denitrificans [TaxId: 266]}
Probab=9.39 E-value=32 Score=20.44 Aligned_cols=15 Identities=20% Similarity=0.432 Sum_probs=11.3
Q ss_pred CCccccccccccchh
Q 048596 16 SSGLVWQDAFISGDL 30 (96)
Q Consensus 16 SSG~vWdd~~~~~~~ 30 (96)
.+|.+||+..|..-+
T Consensus 65 ~~g~~w~~~~L~~~l 79 (121)
T d1cota_ 65 NPDLTWTEADLIEYV 79 (121)
T ss_dssp CTTCBCCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHH
Confidence 478999998776544
No 9
>d1p9ya_ d.241.2.1 (A:) Trigger factor ribosome-binding domain {Escherichia coli [TaxId: 562]}
Probab=8.89 E-value=38 Score=20.48 Aligned_cols=10 Identities=30% Similarity=0.029 Sum_probs=8.5
Q ss_pred cceeecccCC
Q 048596 68 IIFRTSKVLP 77 (96)
Q Consensus 68 ~~yRT~~V~P 77 (96)
.|||-|+|+-
T Consensus 42 pGFRkGKvP~ 51 (117)
T d1p9ya_ 42 DGLRKGKVPM 51 (117)
T ss_dssp TTSCTTCSCH
T ss_pred CCcCCCCccH
Confidence 7899999864
No 10
>d1t3qa1 a.56.1.1 (A:88-168) Quinoline 2-oxidoreductase small subunit QorS, C-domain {Pseudomonas putida [TaxId: 303]}
Probab=8.88 E-value=34 Score=20.51 Aligned_cols=9 Identities=33% Similarity=0.844 Sum_probs=6.0
Q ss_pred ccceeeccC
Q 048596 86 VSGCWFCCP 94 (96)
Q Consensus 86 Vs~CgFC~i 94 (96)
++-||||-.
T Consensus 17 a~QCGfCtP 25 (81)
T d1t3qa1 17 ALQCGFCTA 25 (81)
T ss_dssp CCSSCSSHH
T ss_pred CCCCCCCch
Confidence 345899854
Done!