BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048597
(294 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 162 RFVLLLDDIWEHINLNKLGVPLQYLHLGSKIVFTTNSRVVCGQMEATMLNASPLRDEEAW 221
R +L+LDD+W+ L Q I+ TT + V + P+
Sbjct: 237 RSLLILDDVWDSWVLKAFDSQCQ-------ILLTTRDKSVTDSVMGPKY-VVPVESSLGK 288
Query: 222 RLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVGRAMRSISSIEEWEHAIK 278
E + +V D+PE A ++ +EC PL + +G +R + WE+ +K
Sbjct: 289 EKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPN--RWEYYLK 343
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 162 RFVLLLDDIWEHINLNKLGVPLQYLHLGSKIVFTTNSRVVCGQMEATMLNASPLRDEEAW 221
R +L+LDD+W+ L Q I+ TT + V + P+
Sbjct: 243 RSLLILDDVWDSWVLKAFDSQCQ-------ILLTTRDKSVTDSVMGPKY-VVPVESSLGK 294
Query: 222 RLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVGRAMRSISSIEEWEHAIK 278
E + +V D+PE A ++ +EC PL + +G +R + WE+ +K
Sbjct: 295 EKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPN--RWEYYLK 349
>pdb|1T3Q|B Chain B, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
pdb|1T3Q|E Chain E, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
Length = 788
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 193 VFTTNSRVVCGQMEATMLNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCC 252
+F +++ VV GQ ++A P+ A +E + +L + +P +TM C
Sbjct: 179 IFASSAGVVRGQFSCGRVSACPMETRGAVAQYEWTTQQLILWTATQMPSFVRTMVAMFCA 238
Query: 253 LP 254
+P
Sbjct: 239 IP 240
>pdb|1DOA|B Chain B, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 219
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 216 RDEEAWRLFEEAV-GRYVLDSHPDIPELAKTMAEECCCL---PLALKTVG--RAMRSISS 269
+D+E+ R ++EA+ GR + + P++P + T C PL L G + + S
Sbjct: 58 KDDESLRKYKEALLGRVAVSADPNVPNVVVTRLTLVCSTAPGPLELDLTGDLESFKKQSF 117
Query: 270 I--EEWEHAIKIILRYGRGVFA 289
+ E E+ IKI R R + +
Sbjct: 118 VLKEGVEYRIKISFRVNREIVS 139
>pdb|4F38|B Chain B, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 204
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 216 RDEEAWRLFEEAV-GRYVLDSHPDIPELAKTMAEECCCL---PLALKTVG--RAMRSISS 269
+D+E+ R ++EA+ GR + + P++P + T C PL L G + + S
Sbjct: 43 KDDESLRKYKEALLGRVAVSADPNVPNVVVTRLTLVCSTAPGPLELDLTGDLESFKKQSF 102
Query: 270 I--EEWEHAIKIILRYGRGVFA 289
+ E E+ IKI R R + +
Sbjct: 103 VLKEGVEYRIKISFRVNREIVS 124
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 215 LRDEEAWRLF-EEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVGRAMRSISSIEEW 273
L++ + W +F ++ G DSHPD PE A ++ + L + + + + W
Sbjct: 184 LKEGDDWGIFPKDGSG----DSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNW 239
Query: 274 EHAIK---IILRYGRG 286
E AIK +LRY G
Sbjct: 240 EMAIKKYTKVLRYVEG 255
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,478,591
Number of Sequences: 62578
Number of extensions: 270310
Number of successful extensions: 752
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 747
Number of HSP's gapped (non-prelim): 8
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)