Query 048597
Match_columns 294
No_of_seqs 236 out of 2321
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 11:01:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048597.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048597hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 9.2E-44 2E-48 346.4 25.1 285 2-290 46-393 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 5.8E-35 1.3E-39 255.6 14.5 206 83-288 1-230 (287)
3 PLN03210 Resistant to P. syrin 100.0 5.7E-30 1.2E-34 260.3 22.3 203 77-284 183-418 (1153)
4 TIGR03015 pepcterm_ATPase puta 99.4 4.4E-11 9.6E-16 103.6 22.1 179 100-281 42-267 (269)
5 PF01637 Arch_ATPase: Archaeal 99.4 1E-12 2.2E-17 110.9 10.8 176 80-259 1-233 (234)
6 PRK00411 cdc6 cell division co 99.3 5.3E-10 1.1E-14 102.3 20.6 205 76-281 28-283 (394)
7 TIGR00635 ruvB Holliday juncti 99.1 1E-09 2.2E-14 96.9 13.9 190 78-280 4-229 (305)
8 TIGR02928 orc1/cdc6 family rep 99.1 3.5E-08 7.7E-13 89.3 20.7 204 77-281 14-275 (365)
9 PRK06893 DNA replication initi 99.1 2.4E-09 5.2E-14 90.6 12.0 152 100-262 38-205 (229)
10 PRK00080 ruvB Holliday junctio 99.0 6.9E-09 1.5E-13 92.6 15.2 173 78-263 25-225 (328)
11 PRK13342 recombination factor 99.0 2E-09 4.2E-14 99.0 11.6 176 78-263 12-199 (413)
12 COG2256 MGS1 ATPase related to 99.0 1.3E-09 2.9E-14 96.0 8.6 158 90-257 39-209 (436)
13 PRK04841 transcriptional regul 99.0 1.3E-08 2.9E-13 102.6 16.2 180 76-266 12-231 (903)
14 PF05729 NACHT: NACHT domain 99.0 4.4E-09 9.5E-14 83.9 9.9 70 159-228 79-163 (166)
15 TIGR03420 DnaA_homol_Hda DnaA 98.9 2.2E-08 4.8E-13 84.4 11.9 168 83-263 22-204 (226)
16 PF13173 AAA_14: AAA domain 98.9 2.7E-09 5.8E-14 81.9 5.1 116 101-219 2-126 (128)
17 PRK14961 DNA polymerase III su 98.8 1.1E-07 2.4E-12 85.9 15.3 177 78-259 16-219 (363)
18 PRK07003 DNA polymerase III su 98.8 8.2E-08 1.8E-12 92.0 14.4 178 78-259 16-220 (830)
19 PRK14949 DNA polymerase III su 98.8 1E-07 2.3E-12 92.9 14.4 177 78-260 16-220 (944)
20 PRK12323 DNA polymerase III su 98.8 1.2E-07 2.7E-12 89.6 14.2 177 78-260 16-225 (700)
21 PRK12402 replication factor C 98.8 1.9E-07 4.2E-12 83.5 14.9 176 78-259 15-225 (337)
22 PRK14956 DNA polymerase III su 98.8 1.9E-07 4.2E-12 85.9 14.7 177 78-260 18-222 (484)
23 COG3899 Predicted ATPase [Gene 98.8 5.8E-08 1.3E-12 96.3 12.1 183 80-266 2-266 (849)
24 PLN03025 replication factor C 98.8 7E-08 1.5E-12 85.8 10.9 173 78-258 13-198 (319)
25 PRK14960 DNA polymerase III su 98.7 3.2E-07 6.9E-12 87.0 15.4 178 78-259 15-218 (702)
26 PRK13341 recombination factor 98.7 1.3E-07 2.9E-12 91.9 12.6 171 78-258 28-215 (725)
27 PRK00440 rfc replication facto 98.7 1.3E-07 2.8E-12 83.9 11.7 175 78-259 17-202 (319)
28 PRK09087 hypothetical protein; 98.7 3.1E-07 6.8E-12 77.4 13.1 160 101-280 44-222 (226)
29 PF05496 RuvB_N: Holliday junc 98.7 2.2E-07 4.7E-12 76.9 11.7 177 78-266 24-227 (233)
30 PRK06645 DNA polymerase III su 98.7 2.6E-07 5.6E-12 86.4 13.6 178 78-259 21-228 (507)
31 TIGR02903 spore_lon_C ATP-depe 98.7 4.1E-07 8.8E-12 87.5 14.4 180 78-263 154-398 (615)
32 PRK09112 DNA polymerase III su 98.7 1.4E-06 3E-11 78.1 16.8 178 77-261 22-241 (351)
33 PRK08084 DNA replication initi 98.7 4.1E-07 8.8E-12 77.3 12.5 173 77-262 22-211 (235)
34 PRK07940 DNA polymerase III su 98.7 6.8E-07 1.5E-11 81.3 14.6 174 78-260 5-213 (394)
35 PRK14963 DNA polymerase III su 98.7 4.3E-07 9.4E-12 85.1 13.6 176 78-258 14-215 (504)
36 PRK07994 DNA polymerase III su 98.7 5.9E-07 1.3E-11 85.9 14.3 178 78-260 16-220 (647)
37 TIGR01242 26Sp45 26S proteasom 98.7 8.1E-07 1.8E-11 80.4 14.7 165 78-254 122-328 (364)
38 PRK14962 DNA polymerase III su 98.6 7.9E-07 1.7E-11 82.7 14.7 182 78-264 14-223 (472)
39 PRK04195 replication factor C 98.6 6.1E-07 1.3E-11 84.2 14.0 175 78-264 14-206 (482)
40 PRK05564 DNA polymerase III su 98.6 5.6E-07 1.2E-11 79.8 12.5 172 78-258 4-188 (313)
41 PRK08691 DNA polymerase III su 98.6 6.1E-07 1.3E-11 85.8 13.3 180 78-261 16-221 (709)
42 PTZ00112 origin recognition co 98.6 2E-06 4.4E-11 83.5 16.8 188 77-265 754-987 (1164)
43 PRK08903 DnaA regulatory inact 98.6 9.8E-07 2.1E-11 74.5 13.3 173 78-265 19-204 (227)
44 PRK07471 DNA polymerase III su 98.6 2.2E-06 4.8E-11 77.2 16.1 176 77-261 18-239 (365)
45 PTZ00202 tuzin; Provisional 98.6 6.3E-07 1.4E-11 80.9 12.3 148 75-227 259-433 (550)
46 PRK08727 hypothetical protein; 98.6 1.2E-06 2.5E-11 74.4 13.5 165 78-257 20-201 (233)
47 PRK14951 DNA polymerase III su 98.6 2E-06 4.4E-11 82.1 16.4 178 78-260 16-225 (618)
48 PRK14957 DNA polymerase III su 98.6 1.3E-06 2.8E-11 82.3 14.9 174 78-255 16-215 (546)
49 PRK05896 DNA polymerase III su 98.6 1.2E-06 2.5E-11 82.9 14.5 180 78-262 16-223 (605)
50 PRK14955 DNA polymerase III su 98.6 7.6E-07 1.7E-11 81.5 12.9 176 78-259 16-227 (397)
51 TIGR02397 dnaX_nterm DNA polym 98.6 1.5E-06 3.3E-11 78.3 14.6 179 78-261 14-219 (355)
52 PRK14964 DNA polymerase III su 98.6 1.3E-06 2.9E-11 81.1 14.4 176 78-259 13-216 (491)
53 cd00009 AAA The AAA+ (ATPases 98.6 4.3E-07 9.3E-12 70.3 8.9 43 81-125 1-43 (151)
54 PRK14959 DNA polymerase III su 98.5 1.7E-06 3.7E-11 82.2 13.8 182 78-264 16-225 (624)
55 COG1474 CDC6 Cdc6-related prot 98.5 1.5E-05 3.3E-10 71.8 19.4 182 77-261 16-239 (366)
56 PRK14958 DNA polymerase III su 98.5 1.7E-06 3.8E-11 81.2 13.4 177 78-260 16-220 (509)
57 PRK07764 DNA polymerase III su 98.5 2.1E-06 4.5E-11 84.7 14.3 174 78-257 15-218 (824)
58 PF00308 Bac_DnaA: Bacterial d 98.5 2.2E-06 4.7E-11 72.0 12.6 168 77-259 8-207 (219)
59 PRK05642 DNA replication initi 98.5 2E-06 4.4E-11 73.0 12.4 149 101-263 45-211 (234)
60 KOG0989 Replication factor C, 98.5 8.9E-07 1.9E-11 75.8 9.7 167 78-253 36-223 (346)
61 PRK14950 DNA polymerase III su 98.5 2.5E-06 5.4E-11 81.8 13.9 178 78-260 16-221 (585)
62 PRK06620 hypothetical protein; 98.5 2.4E-06 5.3E-11 71.4 12.0 160 77-259 16-188 (214)
63 PRK14087 dnaA chromosomal repl 98.5 4.1E-06 8.8E-11 77.7 13.9 169 101-280 141-348 (450)
64 PRK14969 DNA polymerase III su 98.4 4E-06 8.6E-11 79.3 13.9 175 78-257 16-217 (527)
65 PF13401 AAA_22: AAA domain; P 98.4 1.1E-06 2.4E-11 67.3 8.3 95 100-198 3-125 (131)
66 PRK03992 proteasome-activating 98.4 1.8E-05 3.9E-10 72.2 17.3 196 78-285 131-377 (389)
67 KOG2028 ATPase related to the 98.4 1.9E-06 4.1E-11 75.5 9.8 151 100-255 161-331 (554)
68 PRK14954 DNA polymerase III su 98.4 9.6E-06 2.1E-10 77.7 15.4 173 78-255 16-223 (620)
69 TIGR02881 spore_V_K stage V sp 98.4 1.4E-06 3.1E-11 75.1 8.9 145 79-231 7-194 (261)
70 PRK14952 DNA polymerase III su 98.4 8.8E-06 1.9E-10 77.4 14.8 173 78-255 13-214 (584)
71 PRK08451 DNA polymerase III su 98.4 9.1E-06 2E-10 76.3 14.6 179 78-260 14-218 (535)
72 TIGR03345 VI_ClpV1 type VI sec 98.4 1.4E-06 3E-11 86.7 9.3 173 78-254 187-390 (852)
73 PRK09111 DNA polymerase III su 98.4 1.3E-05 2.8E-10 76.7 14.9 179 78-261 24-234 (598)
74 PRK06305 DNA polymerase III su 98.4 1.1E-05 2.3E-10 75.0 14.0 173 78-255 17-217 (451)
75 PRK14970 DNA polymerase III su 98.4 9.8E-06 2.1E-10 73.5 13.6 173 78-256 17-205 (367)
76 PRK00149 dnaA chromosomal repl 98.3 2.5E-05 5.3E-10 72.8 16.1 187 80-281 125-350 (450)
77 COG2255 RuvB Holliday junction 98.3 7.9E-06 1.7E-10 69.5 11.3 176 78-265 26-228 (332)
78 TIGR00678 holB DNA polymerase 98.3 1.7E-05 3.7E-10 64.9 13.2 156 89-256 3-187 (188)
79 PHA02544 44 clamp loader, smal 98.3 1.2E-05 2.5E-10 71.4 12.7 137 78-225 21-170 (316)
80 PRK05563 DNA polymerase III su 98.3 2.7E-05 5.9E-10 74.2 15.7 176 78-258 16-218 (559)
81 TIGR00362 DnaA chromosomal rep 98.3 4.9E-05 1.1E-09 69.9 16.8 165 101-280 136-337 (405)
82 PRK14971 DNA polymerase III su 98.3 2.3E-05 5.1E-10 75.3 14.5 177 78-258 17-220 (614)
83 PRK07133 DNA polymerase III su 98.3 3E-05 6.5E-10 75.0 15.1 175 78-257 18-216 (725)
84 PTZ00454 26S protease regulato 98.3 3.7E-05 8.1E-10 70.1 15.1 193 79-282 146-388 (398)
85 PRK06647 DNA polymerase III su 98.2 4.8E-05 1E-09 72.4 16.0 177 78-259 16-219 (563)
86 COG1373 Predicted ATPase (AAA+ 98.2 1.4E-05 3.1E-10 73.0 11.9 127 85-222 24-161 (398)
87 PF05621 TniB: Bacterial TniB 98.2 6.1E-05 1.3E-09 65.2 15.0 179 78-260 34-261 (302)
88 PRK14948 DNA polymerase III su 98.2 4.8E-05 1E-09 73.2 15.9 178 78-260 16-222 (620)
89 PRK14965 DNA polymerase III su 98.2 2.2E-05 4.8E-10 75.1 13.3 178 78-260 16-221 (576)
90 TIGR02639 ClpA ATP-dependent C 98.2 3.3E-06 7.1E-11 83.2 7.8 146 78-228 182-358 (731)
91 PF14516 AAA_35: AAA-like doma 98.2 0.00015 3.1E-09 64.9 17.4 181 77-267 10-246 (331)
92 CHL00095 clpC Clp protease ATP 98.2 8.5E-06 1.8E-10 81.3 10.3 145 78-226 179-352 (821)
93 PRK14088 dnaA chromosomal repl 98.2 4.7E-05 1E-09 70.6 14.5 166 101-280 130-332 (440)
94 PRK14953 DNA polymerase III su 98.2 9.3E-05 2E-09 69.3 16.4 179 78-261 16-221 (486)
95 TIGR02880 cbbX_cfxQ probable R 98.2 3.9E-05 8.4E-10 67.0 13.1 142 79-230 23-210 (284)
96 TIGR01241 FtsH_fam ATP-depende 98.2 4.3E-05 9.3E-10 72.1 14.3 193 78-281 55-296 (495)
97 PF13191 AAA_16: AAA ATPase do 98.2 1.5E-06 3.2E-11 70.6 3.6 43 79-121 1-44 (185)
98 TIGR00602 rad24 checkpoint pro 98.2 3.2E-05 7E-10 74.2 12.9 47 78-124 84-133 (637)
99 COG2909 MalT ATP-dependent tra 98.2 0.0001 2.2E-09 71.3 16.1 182 77-269 18-242 (894)
100 PRK05707 DNA polymerase III su 98.1 0.00013 2.9E-09 64.9 15.5 153 100-260 21-203 (328)
101 PRK10865 protein disaggregatio 98.1 8.6E-06 1.9E-10 81.3 8.5 147 78-228 178-354 (857)
102 PF10443 RNA12: RNA12 protein; 98.1 7.7E-05 1.7E-09 67.4 13.5 183 83-269 1-287 (431)
103 TIGR03346 chaperone_ClpB ATP-d 98.1 1.4E-05 3.1E-10 79.9 9.8 146 78-228 173-349 (852)
104 PRK14086 dnaA chromosomal repl 98.1 7.5E-05 1.6E-09 71.0 13.9 192 79-281 290-516 (617)
105 CHL00181 cbbX CbbX; Provisiona 98.1 0.00013 2.8E-09 63.8 14.5 145 78-230 23-211 (287)
106 PF00004 AAA: ATPase family as 98.1 4.7E-06 1E-10 63.7 4.4 21 104-124 1-21 (132)
107 PRK11034 clpA ATP-dependent Cl 98.1 8.9E-06 1.9E-10 79.7 7.1 146 78-228 186-362 (758)
108 PTZ00361 26 proteosome regulat 98.1 0.00014 3E-09 67.1 14.5 198 79-282 184-426 (438)
109 CHL00176 ftsH cell division pr 98.0 0.00027 5.8E-09 68.3 16.6 194 78-280 183-423 (638)
110 PF05673 DUF815: Protein of un 98.0 1.8E-05 3.8E-10 66.5 6.9 101 77-183 26-131 (249)
111 PRK12422 chromosomal replicati 98.0 7.4E-05 1.6E-09 69.2 11.4 165 101-280 141-343 (445)
112 PRK07399 DNA polymerase III su 98.0 0.00025 5.4E-09 62.8 14.1 173 79-261 5-222 (314)
113 COG3267 ExeA Type II secretory 97.9 0.0003 6.6E-09 59.1 13.2 164 100-263 50-248 (269)
114 COG0593 DnaA ATPase involved i 97.9 0.00024 5.1E-09 64.4 13.4 125 100-237 112-266 (408)
115 TIGR03689 pup_AAA proteasome A 97.9 5.1E-05 1.1E-09 71.0 9.4 152 79-230 183-380 (512)
116 TIGR02639 ClpA ATP-dependent C 97.9 0.00021 4.7E-09 70.5 13.8 45 77-121 453-504 (731)
117 COG1136 SalX ABC-type antimicr 97.9 6.8E-05 1.5E-09 62.5 8.5 59 149-207 148-211 (226)
118 COG2884 FtsE Predicted ATPase 97.9 6.5E-05 1.4E-09 60.4 7.7 62 148-209 142-207 (223)
119 PRK10536 hypothetical protein; 97.9 2.9E-05 6.3E-10 65.9 5.7 39 79-121 56-94 (262)
120 PRK06871 DNA polymerase III su 97.8 0.0017 3.7E-08 57.6 16.9 163 86-258 10-201 (325)
121 TIGR01243 CDC48 AAA family ATP 97.8 0.00042 9.1E-09 68.6 14.5 167 79-254 454-657 (733)
122 COG2812 DnaX DNA polymerase II 97.8 0.00015 3.3E-09 67.5 10.5 153 78-232 16-195 (515)
123 KOG2543 Origin recognition com 97.8 0.00038 8.3E-09 61.7 12.2 186 76-264 4-230 (438)
124 COG3903 Predicted ATPase [Gene 97.8 3.4E-05 7.4E-10 68.9 5.6 159 100-266 13-195 (414)
125 TIGR02640 gas_vesic_GvpN gas v 97.8 0.00065 1.4E-08 58.7 13.2 33 85-121 9-41 (262)
126 KOG0991 Replication factor C, 97.8 0.00079 1.7E-08 56.0 12.6 89 78-173 27-125 (333)
127 COG0466 Lon ATP-dependent Lon 97.8 0.00016 3.4E-09 68.9 9.7 142 78-228 323-508 (782)
128 TIGR03345 VI_ClpV1 type VI sec 97.8 0.00012 2.7E-09 73.0 9.4 45 77-121 565-616 (852)
129 PRK08769 DNA polymerase III su 97.7 0.0016 3.4E-08 57.7 15.1 165 86-261 12-209 (319)
130 KOG0741 AAA+-type ATPase [Post 97.7 0.00062 1.3E-08 62.8 12.5 152 99-266 536-718 (744)
131 PHA00729 NTP-binding motif con 97.7 0.0001 2.2E-09 61.5 7.1 77 90-170 8-91 (226)
132 KOG2227 Pre-initiation complex 97.7 0.0019 4.1E-08 58.9 15.1 195 77-276 149-386 (529)
133 PRK08058 DNA polymerase III su 97.7 0.00055 1.2E-08 61.1 11.8 146 79-226 6-180 (329)
134 CHL00195 ycf46 Ycf46; Provisio 97.7 0.0011 2.3E-08 62.2 13.8 169 78-254 228-429 (489)
135 smart00382 AAA ATPases associa 97.7 0.00022 4.7E-09 54.4 8.0 20 102-121 3-22 (148)
136 TIGR00763 lon ATP-dependent pr 97.7 0.00056 1.2E-08 68.0 12.7 45 78-122 320-368 (775)
137 KOG0733 Nuclear AAA ATPase (VC 97.7 0.0015 3.3E-08 61.3 14.1 87 79-172 191-293 (802)
138 PRK10787 DNA-binding ATP-depen 97.7 0.00038 8.3E-09 68.9 11.0 46 77-122 321-370 (784)
139 PRK07993 DNA polymerase III su 97.6 0.0033 7.2E-08 56.1 15.8 164 86-259 10-203 (334)
140 COG1121 ZnuC ABC-type Mn/Zn tr 97.6 0.0002 4.3E-09 60.8 7.5 21 101-121 30-50 (254)
141 PRK08118 topology modulation p 97.6 8.2E-05 1.8E-09 59.7 4.7 67 102-172 2-69 (167)
142 TIGR01243 CDC48 AAA family ATP 97.6 0.0013 2.9E-08 65.0 14.0 167 79-254 179-381 (733)
143 PRK10865 protein disaggregatio 97.6 0.0012 2.5E-08 66.4 13.6 44 78-121 568-618 (857)
144 COG0542 clpA ATP-binding subun 97.6 0.0003 6.5E-09 68.4 9.0 103 77-183 490-617 (786)
145 PRK06090 DNA polymerase III su 97.6 0.013 2.8E-07 51.9 18.5 179 86-281 11-218 (319)
146 PRK07261 topology modulation p 97.6 4.7E-05 1E-09 61.4 2.9 66 103-172 2-68 (171)
147 COG1222 RPT1 ATP-dependent 26S 97.6 0.0027 5.8E-08 56.1 13.8 194 79-284 152-396 (406)
148 smart00763 AAA_PrkA PrkA AAA d 97.6 7.5E-05 1.6E-09 66.5 4.2 45 77-121 50-98 (361)
149 PF13177 DNA_pol3_delta2: DNA 97.6 0.00084 1.8E-08 53.6 9.9 133 82-216 1-162 (162)
150 PRK06964 DNA polymerase III su 97.6 0.012 2.6E-07 52.7 17.9 90 160-260 131-225 (342)
151 PRK08116 hypothetical protein; 97.5 0.00036 7.8E-09 60.4 8.1 22 102-123 115-136 (268)
152 cd01128 rho_factor Transcripti 97.5 0.00015 3.3E-09 61.8 5.6 25 100-124 15-39 (249)
153 COG0396 sufC Cysteine desulfur 97.5 0.00089 1.9E-08 55.5 9.7 61 149-209 150-214 (251)
154 COG1116 TauB ABC-type nitrate/ 97.5 0.00026 5.6E-09 59.5 6.6 22 100-121 28-49 (248)
155 PRK08181 transposase; Validate 97.5 0.00026 5.6E-09 61.1 6.9 20 102-121 107-126 (269)
156 KOG2035 Replication factor C, 97.5 0.0027 5.9E-08 54.1 12.6 199 80-283 15-261 (351)
157 PF13207 AAA_17: AAA domain; P 97.5 6.9E-05 1.5E-09 56.5 2.9 19 103-121 1-19 (121)
158 PRK11034 clpA ATP-dependent Cl 97.5 0.00049 1.1E-08 67.7 9.4 44 78-121 458-508 (758)
159 TIGR03346 chaperone_ClpB ATP-d 97.5 0.0005 1.1E-08 69.0 9.6 45 77-121 564-615 (852)
160 KOG1514 Origin recognition com 97.5 0.0056 1.2E-07 58.4 15.5 183 77-264 395-625 (767)
161 COG0542 clpA ATP-binding subun 97.5 0.0004 8.7E-09 67.5 8.1 143 78-226 170-344 (786)
162 CHL00095 clpC Clp protease ATP 97.5 0.00056 1.2E-08 68.5 9.3 45 77-121 508-559 (821)
163 PRK06696 uridine kinase; Valid 97.4 0.00022 4.9E-09 60.0 5.3 41 82-122 2-43 (223)
164 KOG0735 AAA+-type ATPase [Post 97.4 0.00061 1.3E-08 64.9 8.4 148 100-253 430-608 (952)
165 PF00448 SRP54: SRP54-type pro 97.4 0.00048 1E-08 56.7 6.9 70 101-170 1-92 (196)
166 PF03215 Rad17: Rad17 cell cyc 97.4 0.0017 3.6E-08 61.3 11.3 43 79-121 20-65 (519)
167 PRK06526 transposase; Provisio 97.4 0.00032 6.8E-09 60.2 6.0 21 101-121 98-118 (254)
168 COG1120 FepC ABC-type cobalami 97.4 0.00075 1.6E-08 57.5 8.1 22 100-121 27-48 (258)
169 COG4618 ArpD ABC-type protease 97.4 0.00044 9.5E-09 63.5 7.0 21 101-121 362-382 (580)
170 cd03216 ABC_Carb_Monos_I This 97.4 0.00043 9.3E-09 55.3 6.2 100 100-202 25-145 (163)
171 PRK06762 hypothetical protein; 97.4 0.0013 2.9E-08 52.5 9.1 21 101-121 2-22 (166)
172 COG1223 Predicted ATPase (AAA+ 97.4 0.0011 2.3E-08 56.1 8.4 164 78-254 121-319 (368)
173 COG1126 GlnQ ABC-type polar am 97.4 0.00093 2E-08 55.0 7.9 57 151-207 144-204 (240)
174 PRK13540 cytochrome c biogenes 97.4 0.00079 1.7E-08 55.6 7.6 22 100-121 26-47 (200)
175 PF02562 PhoH: PhoH-like prote 97.4 0.00014 3E-09 60.0 2.9 36 82-121 4-39 (205)
176 TIGR01069 mutS2 MutS2 family p 97.3 0.00028 6.1E-09 69.7 5.5 166 100-282 321-522 (771)
177 COG1875 NYN ribonuclease and A 97.3 0.0011 2.3E-08 58.6 8.4 38 82-121 228-265 (436)
178 TIGR00767 rho transcription te 97.3 0.00046 1E-08 62.3 6.3 23 100-122 167-189 (415)
179 KOG0734 AAA+-type ATPase conta 97.3 0.00036 7.8E-09 64.4 5.6 88 80-172 306-407 (752)
180 COG1124 DppF ABC-type dipeptid 97.3 0.00082 1.8E-08 56.2 7.2 22 100-121 32-53 (252)
181 cd03247 ABCC_cytochrome_bd The 97.3 0.0011 2.3E-08 53.7 7.9 104 100-203 27-161 (178)
182 PRK08699 DNA polymerase III su 97.3 0.0021 4.6E-08 57.2 10.4 127 100-227 20-184 (325)
183 cd03228 ABCC_MRP_Like The MRP 97.3 0.0013 2.7E-08 53.0 8.2 105 100-204 27-160 (171)
184 cd03214 ABC_Iron-Siderophores_ 97.3 0.0012 2.6E-08 53.6 7.9 103 100-202 24-161 (180)
185 PRK07667 uridine kinase; Provi 97.3 0.00037 7.9E-09 57.3 4.9 36 87-122 3-38 (193)
186 KOG2004 Mitochondrial ATP-depe 97.3 0.00052 1.1E-08 65.4 6.2 43 79-121 412-458 (906)
187 PF14532 Sigma54_activ_2: Sigm 97.3 0.00033 7.1E-09 54.3 4.3 107 81-199 1-110 (138)
188 PRK09183 transposase/IS protei 97.3 0.00042 9.1E-09 59.7 5.1 22 101-122 102-123 (259)
189 PRK13538 cytochrome c biogenes 97.2 0.002 4.2E-08 53.4 8.8 22 100-121 26-47 (204)
190 cd03222 ABC_RNaseL_inhibitor T 97.2 0.00062 1.3E-08 55.1 5.5 104 100-203 24-136 (177)
191 PRK15455 PrkA family serine pr 97.2 0.00036 7.7E-09 65.7 4.6 43 79-121 77-123 (644)
192 cd03246 ABCC_Protease_Secretio 97.2 0.00079 1.7E-08 54.3 6.0 104 100-203 27-160 (173)
193 cd03237 ABC_RNaseL_inhibitor_d 97.2 0.0016 3.4E-08 55.7 8.0 21 101-121 25-45 (246)
194 COG0572 Udk Uridine kinase [Nu 97.2 0.00074 1.6E-08 55.9 5.6 64 100-163 7-86 (218)
195 cd03229 ABC_Class3 This class 97.2 0.00076 1.6E-08 54.6 5.7 22 100-121 25-46 (178)
196 cd03230 ABC_DR_subfamily_A Thi 97.2 0.002 4.3E-08 51.9 8.2 104 100-203 25-159 (173)
197 COG1117 PstB ABC-type phosphat 97.2 0.00092 2E-08 54.9 6.0 22 100-121 32-53 (253)
198 PRK13539 cytochrome c biogenes 97.2 0.002 4.4E-08 53.4 8.2 22 100-121 27-48 (207)
199 cd03263 ABC_subfamily_A The AB 97.2 0.0019 4.1E-08 54.1 8.1 22 100-121 27-48 (220)
200 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.2 0.002 4.4E-08 50.2 7.7 99 100-203 25-131 (144)
201 PRK12377 putative replication 97.2 0.0022 4.7E-08 54.8 8.3 24 100-123 100-123 (248)
202 cd03259 ABC_Carb_Solutes_like 97.2 0.0015 3.3E-08 54.4 7.3 22 100-121 25-46 (213)
203 PF01695 IstB_IS21: IstB-like 97.2 0.00021 4.5E-09 58.0 2.0 21 101-121 47-67 (178)
204 cd03223 ABCD_peroxisomal_ALDP 97.2 0.0022 4.7E-08 51.4 7.8 22 100-121 26-47 (166)
205 COG0488 Uup ATPase components 97.2 0.0022 4.8E-08 60.6 9.0 113 100-214 347-511 (530)
206 PF13671 AAA_33: AAA domain; P 97.2 0.00033 7.3E-09 54.3 3.0 20 103-122 1-20 (143)
207 PRK12608 transcription termina 97.2 0.0013 2.8E-08 59.1 7.0 35 86-121 119-153 (380)
208 KOG1970 Checkpoint RAD17-RFC c 97.1 0.0091 2E-07 55.6 12.4 37 85-121 89-130 (634)
209 PRK04132 replication factor C 97.1 0.0042 9E-08 61.7 11.0 149 107-262 570-733 (846)
210 PRK08939 primosomal protein Dn 97.1 0.002 4.3E-08 56.9 8.0 42 82-123 135-178 (306)
211 PRK07952 DNA replication prote 97.1 0.0029 6.3E-08 53.9 8.7 37 86-122 84-120 (244)
212 cd03264 ABC_drug_resistance_li 97.1 0.0027 5.8E-08 52.8 8.4 19 103-121 27-45 (211)
213 PRK13543 cytochrome c biogenes 97.1 0.0028 6E-08 52.9 8.5 22 100-121 36-57 (214)
214 cd03282 ABC_MSH4_euk MutS4 hom 97.1 0.0011 2.4E-08 55.0 5.9 103 100-206 28-158 (204)
215 PRK09270 nucleoside triphospha 97.1 0.00072 1.6E-08 57.2 4.8 25 98-122 30-54 (229)
216 PRK09376 rho transcription ter 97.1 0.00071 1.5E-08 60.9 4.8 25 101-125 169-193 (416)
217 PLN00020 ribulose bisphosphate 97.1 0.00035 7.5E-09 62.3 2.8 26 99-124 146-171 (413)
218 PRK06547 hypothetical protein; 97.1 0.00077 1.7E-08 54.3 4.6 32 90-123 6-37 (172)
219 TIGR02858 spore_III_AA stage I 97.1 0.005 1.1E-07 53.3 9.8 112 86-201 97-231 (270)
220 KOG0730 AAA+-type ATPase [Post 97.1 0.015 3.2E-07 55.3 13.5 157 79-243 435-630 (693)
221 PF07693 KAP_NTPase: KAP famil 97.1 0.02 4.4E-07 50.8 14.1 37 85-121 3-40 (325)
222 PRK05342 clpX ATP-dependent pr 97.1 0.0013 2.8E-08 60.4 6.4 45 78-122 71-129 (412)
223 cd03369 ABCC_NFT1 Domain 2 of 97.1 0.0033 7.2E-08 52.1 8.4 22 100-121 33-54 (207)
224 COG3910 Predicted ATPase [Gene 97.1 0.0028 6.2E-08 51.0 7.4 22 100-121 36-57 (233)
225 COG4608 AppF ABC-type oligopep 97.1 0.0018 3.8E-08 55.3 6.6 125 100-225 38-199 (268)
226 COG2607 Predicted ATPase (AAA+ 97.1 0.0021 4.5E-08 53.8 6.8 99 78-184 60-165 (287)
227 TIGR02974 phageshock_pspF psp 97.1 0.0012 2.6E-08 59.0 5.9 43 80-122 1-43 (329)
228 cd03215 ABC_Carb_Monos_II This 97.0 0.0029 6.2E-08 51.4 7.7 22 100-121 25-46 (182)
229 COG1131 CcmA ABC-type multidru 97.0 0.0059 1.3E-07 53.6 10.1 22 100-121 30-51 (293)
230 TIGR01188 drrA daunorubicin re 97.0 0.0032 6.9E-08 55.5 8.5 22 100-121 18-39 (302)
231 TIGR03522 GldA_ABC_ATP gliding 97.0 0.0038 8.3E-08 55.0 9.0 22 100-121 27-48 (301)
232 KOG0733 Nuclear AAA ATPase (VC 97.0 0.0047 1E-07 58.1 9.7 169 79-254 512-718 (802)
233 PRK04296 thymidine kinase; Pro 97.0 0.00073 1.6E-08 55.4 4.1 96 102-200 3-117 (190)
234 PRK00409 recombination and DNA 97.0 0.00062 1.3E-08 67.5 4.2 166 100-282 326-527 (782)
235 PF00485 PRK: Phosphoribulokin 97.0 0.00047 1E-08 56.7 2.9 19 103-121 1-19 (194)
236 cd03281 ABC_MSH5_euk MutS5 hom 97.0 0.0011 2.4E-08 55.3 5.1 22 101-122 29-50 (213)
237 PRK06835 DNA replication prote 97.0 0.0015 3.3E-08 58.1 6.2 21 101-121 183-203 (329)
238 PRK11889 flhF flagellar biosyn 97.0 0.0074 1.6E-07 54.7 10.5 22 100-121 240-261 (436)
239 COG4181 Predicted ABC-type tra 97.0 0.0054 1.2E-07 48.8 8.4 60 148-208 151-216 (228)
240 PRK05480 uridine/cytidine kina 97.0 0.00062 1.3E-08 56.6 3.4 24 100-123 5-28 (209)
241 KOG0731 AAA+-type ATPase conta 97.0 0.025 5.4E-07 55.1 14.5 169 79-258 312-522 (774)
242 PRK10733 hflB ATP-dependent me 97.0 0.0075 1.6E-07 58.8 11.2 140 102-252 186-355 (644)
243 cd01131 PilT Pilus retraction 97.0 0.001 2.2E-08 55.0 4.5 98 102-202 2-112 (198)
244 PF13238 AAA_18: AAA domain; P 97.0 0.00055 1.2E-08 51.8 2.7 21 104-124 1-21 (129)
245 TIGR01817 nifA Nif-specific re 97.0 0.0016 3.4E-08 62.2 6.3 46 77-122 195-240 (534)
246 TIGR00235 udk uridine kinase. 97.0 0.0007 1.5E-08 56.3 3.4 24 100-123 5-28 (207)
247 cd03245 ABCC_bacteriocin_expor 97.0 0.0045 9.8E-08 51.8 8.3 22 100-121 29-50 (220)
248 KOG2228 Origin recognition com 97.0 0.011 2.4E-07 51.9 10.7 152 78-229 24-220 (408)
249 TIGR00968 3a0106s01 sulfate AB 96.9 0.0034 7.3E-08 53.3 7.6 22 100-121 25-46 (237)
250 KOG0743 AAA+-type ATPase [Post 96.9 0.038 8.1E-07 50.4 14.4 180 85-282 212-433 (457)
251 PRK13531 regulatory ATPase Rav 96.9 0.00091 2E-08 61.9 4.2 43 77-123 19-61 (498)
252 cd00267 ABC_ATPase ABC (ATP-bi 96.9 0.0035 7.5E-08 49.6 7.1 101 101-204 25-145 (157)
253 TIGR03740 galliderm_ABC gallid 96.9 0.004 8.6E-08 52.3 7.7 22 100-121 25-46 (223)
254 KOG0927 Predicted transporter 96.9 0.0038 8.2E-08 57.9 8.0 40 81-121 397-436 (614)
255 cd03231 ABC_CcmA_heme_exporter 96.9 0.0049 1.1E-07 50.9 8.2 22 100-121 25-46 (201)
256 COG1102 Cmk Cytidylate kinase 96.9 0.0011 2.5E-08 51.9 4.0 37 103-139 2-46 (179)
257 TIGR00382 clpX endopeptidase C 96.9 0.0012 2.5E-08 60.5 4.7 46 77-122 76-137 (413)
258 cd02027 APSK Adenosine 5'-phos 96.9 0.0049 1.1E-07 48.4 7.7 19 103-121 1-19 (149)
259 PRK13536 nodulation factor exp 96.9 0.0073 1.6E-07 54.2 9.8 22 100-121 66-87 (340)
260 KOG0736 Peroxisome assembly fa 96.9 0.023 5E-07 55.0 13.3 90 78-172 672-775 (953)
261 PRK08233 hypothetical protein; 96.9 0.00074 1.6E-08 54.6 3.2 22 101-122 3-24 (182)
262 PTZ00301 uridine kinase; Provi 96.9 0.00075 1.6E-08 56.2 3.1 21 101-121 3-23 (210)
263 COG0470 HolB ATPase involved i 96.9 0.0057 1.2E-07 54.2 9.0 138 80-217 3-170 (325)
264 PF04665 Pox_A32: Poxvirus A32 96.9 0.0011 2.4E-08 56.0 4.1 21 101-121 13-33 (241)
265 PRK15429 formate hydrogenlyase 96.9 0.0027 5.9E-08 62.4 7.3 45 78-122 376-420 (686)
266 cd03251 ABCC_MsbA MsbA is an e 96.9 0.0054 1.2E-07 51.9 8.3 22 100-121 27-48 (234)
267 TIGR03411 urea_trans_UrtD urea 96.9 0.0061 1.3E-07 51.8 8.7 22 100-121 27-48 (242)
268 KOG1969 DNA replication checkp 96.9 0.0011 2.3E-08 63.4 4.1 64 100-173 325-399 (877)
269 cd03244 ABCC_MRP_domain2 Domai 96.9 0.0072 1.6E-07 50.6 8.8 22 100-121 29-50 (221)
270 PRK13537 nodulation ABC transp 96.9 0.0045 9.8E-08 54.7 7.9 21 101-121 33-53 (306)
271 PRK13650 cbiO cobalt transport 96.9 0.0034 7.4E-08 54.7 7.0 22 100-121 32-53 (279)
272 PRK11153 metN DL-methionine tr 96.9 0.0038 8.3E-08 56.1 7.5 22 100-121 30-51 (343)
273 COG4619 ABC-type uncharacteriz 96.9 0.0059 1.3E-07 48.4 7.4 21 101-121 29-49 (223)
274 cd02019 NK Nucleoside/nucleoti 96.8 0.00085 1.8E-08 45.3 2.5 21 103-123 1-21 (69)
275 COG2274 SunT ABC-type bacterio 96.8 0.0032 7E-08 61.6 7.3 22 100-121 498-519 (709)
276 cd03285 ABC_MSH2_euk MutS2 hom 96.8 0.002 4.4E-08 54.1 5.2 158 100-266 29-219 (222)
277 TIGR02314 ABC_MetN D-methionin 96.8 0.0043 9.2E-08 55.7 7.4 22 100-121 30-51 (343)
278 KOG0066 eIF2-interacting prote 96.8 0.0091 2E-07 54.2 9.3 22 100-121 612-633 (807)
279 cd03300 ABC_PotA_N PotA is an 96.8 0.0052 1.1E-07 52.0 7.5 22 100-121 25-46 (232)
280 cd02023 UMPK Uridine monophosp 96.8 0.00085 1.8E-08 55.3 2.5 21 103-123 1-21 (198)
281 COG4088 Predicted nucleotide k 96.8 0.0028 6.1E-08 51.8 5.3 21 102-122 2-22 (261)
282 TIGR01360 aden_kin_iso1 adenyl 96.8 0.0011 2.3E-08 54.0 3.0 23 100-122 2-24 (188)
283 smart00534 MUTSac ATPase domai 96.8 0.0012 2.6E-08 53.8 3.3 152 103-263 1-183 (185)
284 TIGR03375 type_I_sec_LssB type 96.8 0.0042 9E-08 61.3 7.5 22 100-121 490-511 (694)
285 COG1484 DnaC DNA replication p 96.8 0.0062 1.4E-07 52.3 7.7 39 83-122 88-126 (254)
286 COG1618 Predicted nucleotide k 96.7 0.0011 2.3E-08 52.0 2.6 22 100-121 4-25 (179)
287 TIGR02857 CydD thiol reductant 96.7 0.0053 1.1E-07 58.5 7.9 22 100-121 347-368 (529)
288 PRK13657 cyclic beta-1,2-gluca 96.7 0.0042 9.1E-08 60.0 7.3 22 100-121 360-381 (588)
289 TIGR00554 panK_bact pantothena 96.7 0.0017 3.8E-08 56.6 4.1 22 100-121 61-82 (290)
290 TIGR00150 HI0065_YjeE ATPase, 96.7 0.0029 6.4E-08 48.5 4.9 37 86-122 7-43 (133)
291 COG0488 Uup ATPase components 96.7 0.0078 1.7E-07 57.0 8.7 57 151-209 161-220 (530)
292 COG3840 ThiQ ABC-type thiamine 96.7 0.0072 1.6E-07 48.6 7.1 22 100-121 24-45 (231)
293 PF01583 APS_kinase: Adenylyls 96.7 0.0054 1.2E-07 48.4 6.4 21 101-121 2-22 (156)
294 TIGR02868 CydC thiol reductant 96.7 0.0046 1E-07 58.9 7.3 22 100-121 360-381 (529)
295 COG2401 ABC-type ATPase fused 96.7 0.0035 7.5E-08 56.5 5.8 59 151-209 515-578 (593)
296 PRK11176 lipid transporter ATP 96.7 0.0044 9.6E-08 59.8 7.1 22 100-121 368-389 (582)
297 PRK06921 hypothetical protein; 96.7 0.005 1.1E-07 53.3 6.7 24 100-123 116-139 (266)
298 KOG0744 AAA+-type ATPase [Post 96.7 0.0023 5E-08 55.8 4.5 124 100-228 176-340 (423)
299 PRK11331 5-methylcytosine-spec 96.7 0.002 4.3E-08 59.2 4.3 41 78-122 175-215 (459)
300 PF03308 ArgK: ArgK protein; 96.7 0.0029 6.2E-08 53.7 4.9 36 86-121 14-49 (266)
301 cd02025 PanK Pantothenate kina 96.7 0.0011 2.3E-08 55.8 2.3 21 103-123 1-21 (220)
302 PRK11000 maltose/maltodextrin 96.7 0.0059 1.3E-07 55.4 7.3 22 100-121 28-49 (369)
303 PRK11650 ugpC glycerol-3-phosp 96.7 0.0047 1E-07 55.8 6.6 21 101-121 30-50 (356)
304 PRK10867 signal recognition pa 96.7 0.014 3E-07 53.9 9.7 22 100-121 99-120 (433)
305 COG1127 Ttg2A ABC-type transpo 96.7 0.0072 1.6E-07 50.6 7.0 22 100-121 33-54 (263)
306 PRK13636 cbiO cobalt transport 96.7 0.0067 1.4E-07 53.0 7.3 22 100-121 31-52 (283)
307 TIGR02322 phosphon_PhnN phosph 96.7 0.0014 3.1E-08 53.0 2.9 22 102-123 2-23 (179)
308 cd02021 GntK Gluconate kinase 96.6 0.012 2.7E-07 45.9 8.2 19 103-121 1-19 (150)
309 COG0194 Gmk Guanylate kinase [ 96.6 0.004 8.7E-08 50.1 5.3 25 101-125 4-28 (191)
310 COG0465 HflB ATP-dependent Zn 96.6 0.033 7.1E-07 53.1 12.2 168 78-256 150-357 (596)
311 PRK14738 gmk guanylate kinase; 96.6 0.0016 3.5E-08 54.1 3.2 28 96-123 8-35 (206)
312 TIGR03265 PhnT2 putative 2-ami 96.6 0.0073 1.6E-07 54.5 7.6 21 101-121 30-50 (353)
313 PRK09452 potA putrescine/sperm 96.6 0.007 1.5E-07 55.0 7.4 22 100-121 39-60 (375)
314 PRK11432 fbpC ferric transport 96.6 0.0079 1.7E-07 54.2 7.7 22 100-121 31-52 (351)
315 COG4586 ABC-type uncharacteriz 96.6 0.01 2.2E-07 50.7 7.7 75 154-228 167-248 (325)
316 PRK00771 signal recognition pa 96.6 0.015 3.2E-07 53.8 9.5 22 100-121 94-115 (437)
317 cd00820 PEPCK_HprK Phosphoenol 96.6 0.0019 4.1E-08 47.5 2.9 22 101-122 15-36 (107)
318 TIGR02203 MsbA_lipidA lipid A 96.6 0.0052 1.1E-07 59.1 6.9 22 100-121 357-378 (571)
319 TIGR03499 FlhF flagellar biosy 96.6 0.011 2.3E-07 51.7 8.1 22 100-121 193-214 (282)
320 cd01130 VirB11-like_ATPase Typ 96.6 0.0017 3.7E-08 53.0 2.9 80 101-180 25-119 (186)
321 PF06309 Torsin: Torsin; Inte 96.6 0.0047 1E-07 46.6 5.0 44 78-121 25-73 (127)
322 PRK10751 molybdopterin-guanine 96.6 0.0021 4.5E-08 51.7 3.2 24 100-123 5-28 (173)
323 TIGR00959 ffh signal recogniti 96.5 0.02 4.3E-07 52.8 9.9 22 100-121 98-119 (428)
324 PRK14246 phosphate ABC transpo 96.5 0.014 3E-07 50.2 8.5 22 100-121 35-56 (257)
325 PRK11174 cysteine/glutathione 96.5 0.0084 1.8E-07 57.9 7.9 22 100-121 375-396 (588)
326 KOG0738 AAA+-type ATPase [Post 96.5 0.032 7E-07 50.0 10.6 25 99-123 243-267 (491)
327 PF02463 SMC_N: RecF/RecN/SMC 96.5 0.01 2.2E-07 49.6 7.4 46 160-205 157-205 (220)
328 TIGR03263 guanyl_kin guanylate 96.5 0.0019 4.1E-08 52.2 2.9 22 102-123 2-23 (180)
329 COG1936 Predicted nucleotide k 96.5 0.0067 1.4E-07 48.2 5.7 19 103-121 2-20 (180)
330 cd03115 SRP The signal recogni 96.5 0.008 1.7E-07 48.3 6.5 19 103-121 2-20 (173)
331 PF08298 AAA_PrkA: PrkA AAA do 96.5 0.0036 7.8E-08 55.5 4.7 45 77-121 60-108 (358)
332 PRK10636 putative ABC transpor 96.5 0.014 3E-07 57.0 9.1 22 100-121 337-358 (638)
333 COG1119 ModF ABC-type molybden 96.5 0.017 3.7E-07 48.6 8.3 20 102-121 58-77 (257)
334 COG3839 MalK ABC-type sugar tr 96.5 0.01 2.2E-07 52.8 7.4 21 101-121 29-49 (338)
335 PRK12723 flagellar biosynthesi 96.5 0.019 4E-07 52.3 9.3 22 100-121 173-194 (388)
336 PRK14722 flhF flagellar biosyn 96.5 0.0093 2E-07 53.9 7.3 22 100-121 136-157 (374)
337 PRK05201 hslU ATP-dependent pr 96.5 0.0053 1.1E-07 56.0 5.7 45 77-121 14-70 (443)
338 PF10236 DAP3: Mitochondrial r 96.5 0.14 3.1E-06 45.3 14.7 49 209-257 258-306 (309)
339 KOG0058 Peptide exporter, ABC 96.5 0.007 1.5E-07 58.1 6.7 22 100-121 493-514 (716)
340 PRK14737 gmk guanylate kinase; 96.5 0.0043 9.2E-08 50.7 4.7 24 100-123 3-26 (186)
341 PRK10078 ribose 1,5-bisphospho 96.5 0.0021 4.5E-08 52.5 2.9 21 102-122 3-23 (186)
342 PLN02318 phosphoribulokinase/u 96.5 0.0034 7.4E-08 59.5 4.5 32 91-122 55-86 (656)
343 COG0410 LivF ABC-type branched 96.5 0.0097 2.1E-07 49.5 6.7 22 100-121 28-49 (237)
344 PF08433 KTI12: Chromatin asso 96.5 0.0084 1.8E-07 51.9 6.6 21 102-122 2-22 (270)
345 PRK04040 adenylate kinase; Pro 96.5 0.0023 4.9E-08 52.4 3.0 21 101-121 2-22 (188)
346 PF00158 Sigma54_activat: Sigm 96.5 0.0039 8.3E-08 50.0 4.2 43 80-122 1-43 (168)
347 PF00005 ABC_tran: ABC transpo 96.5 0.0023 5.1E-08 49.1 2.9 21 101-121 11-31 (137)
348 TIGR01193 bacteriocin_ABC ABC- 96.5 0.0084 1.8E-07 59.3 7.4 22 100-121 499-520 (708)
349 TIGR00958 3a01208 Conjugate Tr 96.5 0.013 2.9E-07 57.9 8.8 22 100-121 506-527 (711)
350 COG0464 SpoVK ATPases of the A 96.5 0.036 7.9E-07 52.4 11.4 126 100-231 275-426 (494)
351 TIGR02030 BchI-ChlI magnesium 96.5 0.0042 9.1E-08 55.5 4.8 42 78-121 4-45 (337)
352 PRK11160 cysteine/glutathione 96.4 0.013 2.8E-07 56.5 8.4 22 100-121 365-386 (574)
353 PRK03839 putative kinase; Prov 96.4 0.0023 5.1E-08 51.8 2.9 19 103-121 2-20 (180)
354 cd03289 ABCC_CFTR2 The CFTR su 96.4 0.011 2.4E-07 51.3 7.3 22 100-121 29-50 (275)
355 cd03238 ABC_UvrA The excision 96.4 0.0024 5.3E-08 51.6 2.9 104 100-203 20-153 (176)
356 PF01078 Mg_chelatase: Magnesi 96.4 0.0052 1.1E-07 50.6 4.8 39 79-121 4-42 (206)
357 PF07728 AAA_5: AAA domain (dy 96.4 0.0023 5E-08 49.4 2.6 18 104-121 2-19 (139)
358 cd00227 CPT Chloramphenicol (C 96.4 0.0025 5.3E-08 51.5 2.9 21 102-122 3-23 (175)
359 PRK15064 ABC transporter ATP-b 96.4 0.022 4.9E-07 54.3 9.8 22 100-121 344-365 (530)
360 PF00910 RNA_helicase: RNA hel 96.4 0.002 4.3E-08 47.6 2.1 19 104-122 1-19 (107)
361 PRK00300 gmk guanylate kinase; 96.4 0.0027 5.8E-08 52.5 3.1 25 100-124 4-28 (205)
362 COG4152 ABC-type uncharacteriz 96.4 0.0089 1.9E-07 50.3 6.1 22 100-121 27-48 (300)
363 COG4133 CcmA ABC-type transpor 96.4 0.021 4.5E-07 46.1 7.9 21 101-121 28-48 (209)
364 PRK05439 pantothenate kinase; 96.4 0.0046 1E-07 54.4 4.6 24 98-121 83-106 (311)
365 PRK11607 potG putrescine trans 96.4 0.017 3.8E-07 52.5 8.6 22 100-121 44-65 (377)
366 PRK14723 flhF flagellar biosyn 96.4 0.018 4E-07 56.4 9.1 21 101-121 185-205 (767)
367 PRK13409 putative ATPase RIL; 96.4 0.016 3.4E-07 56.0 8.6 21 101-121 365-385 (590)
368 cd01394 radB RadB. The archaea 96.4 0.017 3.7E-07 48.2 7.9 22 100-121 18-39 (218)
369 TIGR03796 NHPM_micro_ABC1 NHPM 96.4 0.012 2.5E-07 58.3 7.9 22 100-121 504-525 (710)
370 TIGR01846 type_I_sec_HlyB type 96.4 0.01 2.2E-07 58.6 7.4 22 100-121 482-503 (694)
371 PRK00131 aroK shikimate kinase 96.4 0.003 6.4E-08 50.6 3.1 22 100-121 3-24 (175)
372 cd03287 ABC_MSH3_euk MutS3 hom 96.4 0.0051 1.1E-07 51.7 4.6 105 100-205 30-160 (222)
373 cd01121 Sms Sms (bacterial rad 96.4 0.014 3.1E-07 52.8 7.8 32 90-121 71-102 (372)
374 cd02024 NRK1 Nicotinamide ribo 96.4 0.0023 5E-08 52.2 2.4 20 103-122 1-20 (187)
375 PRK14721 flhF flagellar biosyn 96.4 0.016 3.5E-07 53.2 8.1 22 100-121 190-211 (420)
376 cd02028 UMPK_like Uridine mono 96.3 0.0025 5.3E-08 51.8 2.5 20 103-122 1-20 (179)
377 TIGR01359 UMP_CMP_kin_fam UMP- 96.3 0.0024 5.1E-08 51.8 2.4 19 103-121 1-19 (183)
378 COG4107 PhnK ABC-type phosphon 96.3 0.024 5.1E-07 45.3 7.8 21 101-121 32-52 (258)
379 TIGR00390 hslU ATP-dependent p 96.3 0.0053 1.2E-07 55.9 4.8 45 77-121 11-67 (441)
380 COG1137 YhbG ABC-type (unclass 96.3 0.0031 6.7E-08 51.4 2.9 49 149-199 145-199 (243)
381 PRK06217 hypothetical protein; 96.3 0.0027 5.9E-08 51.6 2.6 21 102-122 2-22 (183)
382 PF03193 DUF258: Protein of un 96.3 0.0061 1.3E-07 48.3 4.5 35 86-125 25-59 (161)
383 PRK08972 fliI flagellum-specif 96.3 0.0055 1.2E-07 56.3 4.8 23 100-122 161-183 (444)
384 cd00071 GMPK Guanosine monopho 96.3 0.0027 5.9E-08 49.1 2.5 21 103-123 1-21 (137)
385 PRK05541 adenylylsulfate kinas 96.3 0.0033 7.3E-08 50.7 3.1 23 100-122 6-28 (176)
386 TIGR00455 apsK adenylylsulfate 96.3 0.018 3.9E-07 46.8 7.4 23 100-122 17-39 (184)
387 TIGR01425 SRP54_euk signal rec 96.3 0.028 6.2E-07 51.7 9.4 22 100-121 99-120 (429)
388 cd02020 CMPK Cytidine monophos 96.3 0.0027 5.9E-08 49.3 2.4 19 103-121 1-19 (147)
389 KOG3347 Predicted nucleotide k 96.3 0.014 3E-07 45.2 6.1 108 100-217 6-122 (176)
390 PF08477 Miro: Miro-like prote 96.3 0.0032 7E-08 46.9 2.8 23 104-126 2-24 (119)
391 PRK09536 btuD corrinoid ABC tr 96.3 0.02 4.2E-07 52.6 8.3 22 100-121 28-49 (402)
392 TIGR01313 therm_gnt_kin carboh 96.3 0.0024 5.2E-08 50.8 2.1 18 104-121 1-18 (163)
393 COG0563 Adk Adenylate kinase a 96.3 0.0029 6.3E-08 51.2 2.6 19 103-121 2-20 (178)
394 PRK10463 hydrogenase nickel in 96.3 0.019 4.2E-07 49.9 7.8 23 99-121 102-124 (290)
395 PRK10790 putative multidrug tr 96.3 0.012 2.5E-07 57.0 7.2 22 100-121 366-387 (592)
396 TIGR01192 chvA glucan exporter 96.3 0.014 3E-07 56.4 7.7 22 100-121 360-381 (585)
397 COG1122 CbiO ABC-type cobalt t 96.3 0.016 3.5E-07 49.0 7.2 22 100-121 29-50 (235)
398 TIGR03877 thermo_KaiC_1 KaiC d 96.3 0.023 4.9E-07 48.3 8.2 30 92-121 12-41 (237)
399 PRK00625 shikimate kinase; Pro 96.3 0.0032 6.9E-08 50.8 2.7 19 103-121 2-20 (173)
400 PRK06067 flagellar accessory p 96.2 0.026 5.5E-07 47.8 8.3 29 93-121 17-45 (234)
401 TIGR02012 tigrfam_recA protein 96.2 0.028 6.1E-07 49.8 8.7 73 100-172 54-144 (321)
402 COG1066 Sms Predicted ATP-depe 96.2 0.022 4.8E-07 51.4 8.0 82 88-172 80-179 (456)
403 PRK03846 adenylylsulfate kinas 96.2 0.0041 9E-08 51.2 3.3 23 100-122 23-45 (198)
404 TIGR01166 cbiO cobalt transpor 96.2 0.0036 7.7E-08 51.2 2.9 26 100-125 17-42 (190)
405 PRK15453 phosphoribulokinase; 96.2 0.019 4.2E-07 49.6 7.4 22 100-121 4-25 (290)
406 cd03227 ABC_Class2 ABC-type Cl 96.2 0.013 2.9E-07 46.6 6.1 103 102-204 22-146 (162)
407 PRK10522 multidrug transporter 96.2 0.019 4.1E-07 55.0 8.2 22 100-121 348-369 (547)
408 PRK12726 flagellar biosynthesi 96.2 0.021 4.6E-07 51.5 7.8 22 100-121 205-226 (407)
409 KOG0927 Predicted transporter 96.2 0.023 5E-07 52.9 8.2 21 101-121 101-121 (614)
410 COG1703 ArgK Putative periplas 96.2 0.0058 1.2E-07 52.8 4.1 34 88-121 38-71 (323)
411 PRK08149 ATP synthase SpaL; Va 96.2 0.012 2.5E-07 54.1 6.3 23 100-122 150-172 (428)
412 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.2 0.0037 8E-08 52.3 2.9 25 100-124 29-53 (218)
413 PRK10789 putative multidrug tr 96.2 0.014 3E-07 56.2 7.2 22 100-121 340-361 (569)
414 cd00561 CobA_CobO_BtuR ATP:cor 96.2 0.011 2.4E-07 46.7 5.4 41 160-200 94-139 (159)
415 cd03225 ABC_cobalt_CbiO_domain 96.2 0.0038 8.1E-08 51.9 2.9 24 100-123 26-49 (211)
416 PRK00889 adenylylsulfate kinas 96.2 0.0048 1E-07 49.7 3.4 23 100-122 3-25 (175)
417 PRK09435 membrane ATPase/prote 96.2 0.0068 1.5E-07 53.9 4.6 34 88-121 43-76 (332)
418 PLN03073 ABC transporter F fam 96.2 0.03 6.5E-07 55.3 9.5 110 103-214 537-699 (718)
419 TIGR02204 MsbA_rel ABC transpo 96.2 0.012 2.6E-07 56.7 6.7 22 100-121 365-386 (576)
420 cd00983 recA RecA is a bacter 96.2 0.032 6.9E-07 49.5 8.7 73 100-172 54-144 (325)
421 TIGR00960 3a0501s02 Type II (G 96.2 0.004 8.6E-08 52.0 2.9 24 100-123 28-51 (216)
422 PF13555 AAA_29: P-loop contai 96.2 0.0054 1.2E-07 40.2 2.9 20 102-121 24-43 (62)
423 TIGR00708 cobA cob(I)alamin ad 96.2 0.028 6.2E-07 45.1 7.6 46 155-200 90-141 (173)
424 TIGR01842 type_I_sec_PrtD type 96.2 0.018 4E-07 55.0 7.8 22 100-121 343-364 (544)
425 TIGR00073 hypB hydrogenase acc 96.1 0.0057 1.2E-07 50.8 3.7 24 100-123 21-44 (207)
426 PF03205 MobB: Molybdopterin g 96.1 0.0045 9.8E-08 48.0 2.9 22 102-123 1-22 (140)
427 cd03284 ABC_MutS1 MutS1 homolo 96.1 0.0055 1.2E-07 51.3 3.6 21 102-122 31-51 (216)
428 KOG0739 AAA+-type ATPase [Post 96.1 0.02 4.2E-07 49.6 6.8 84 80-172 135-236 (439)
429 PF12775 AAA_7: P-loop contain 96.1 0.0072 1.6E-07 52.4 4.4 32 87-121 22-53 (272)
430 cd03269 ABC_putative_ATPase Th 96.1 0.0043 9.3E-08 51.6 2.9 23 100-122 25-47 (210)
431 COG3842 PotA ABC-type spermidi 96.1 0.0041 8.9E-08 55.5 2.8 21 101-121 31-51 (352)
432 COG1125 OpuBA ABC-type proline 96.1 0.0071 1.5E-07 51.1 4.1 22 100-121 26-47 (309)
433 cd03297 ABC_ModC_molybdenum_tr 96.1 0.0047 1E-07 51.5 3.1 24 100-124 23-46 (214)
434 COG4525 TauB ABC-type taurine 96.1 0.028 6E-07 45.8 7.2 21 101-121 31-51 (259)
435 TIGR03797 NHPM_micro_ABC2 NHPM 96.1 0.018 3.9E-07 56.8 7.6 22 100-121 478-499 (686)
436 PRK14974 cell division protein 96.1 0.054 1.2E-06 48.4 9.9 22 100-121 139-160 (336)
437 COG0714 MoxR-like ATPases [Gen 96.1 0.0077 1.7E-07 53.8 4.6 40 78-121 24-63 (329)
438 cd03261 ABC_Org_Solvent_Resist 96.1 0.0044 9.5E-08 52.5 2.9 22 100-121 25-46 (235)
439 cd00464 SK Shikimate kinase (S 96.1 0.0042 9.2E-08 48.6 2.6 18 104-121 2-19 (154)
440 PRK14530 adenylate kinase; Pro 96.1 0.0044 9.6E-08 51.8 2.9 20 102-121 4-23 (215)
441 KOG0062 ATPase component of AB 96.1 0.0079 1.7E-07 55.5 4.6 22 100-121 105-126 (582)
442 COG1123 ATPase components of v 96.1 0.018 3.8E-07 54.1 7.0 123 103-226 37-245 (539)
443 PF03266 NTPase_1: NTPase; In 96.1 0.0044 9.5E-08 49.7 2.6 18 104-121 2-19 (168)
444 cd03235 ABC_Metallic_Cations A 96.1 0.0046 1E-07 51.5 2.9 24 100-123 24-47 (213)
445 TIGR02673 FtsE cell division A 96.1 0.0047 1E-07 51.5 2.9 24 100-123 27-50 (214)
446 TIGR02173 cyt_kin_arch cytidyl 96.1 0.01 2.2E-07 47.4 4.8 19 103-121 2-20 (171)
447 PRK09354 recA recombinase A; P 96.1 0.034 7.3E-07 49.8 8.4 73 100-172 59-149 (349)
448 PF00006 ATP-synt_ab: ATP synt 96.1 0.015 3.3E-07 48.5 5.9 20 102-121 16-35 (215)
449 PRK09825 idnK D-gluconate kina 96.1 0.005 1.1E-07 49.8 2.9 22 102-123 4-25 (176)
450 TIGR02315 ABC_phnC phosphonate 96.1 0.0047 1E-07 52.5 2.9 22 100-121 27-48 (243)
451 cd03293 ABC_NrtD_SsuB_transpor 96.1 0.0049 1.1E-07 51.6 2.9 22 101-122 30-51 (220)
452 PTZ00088 adenylate kinase 1; P 96.0 0.016 3.4E-07 49.0 6.0 20 102-121 7-26 (229)
453 PRK13949 shikimate kinase; Pro 96.0 0.0048 1E-07 49.6 2.7 19 103-121 3-21 (169)
454 TIGR00750 lao LAO/AO transport 96.0 0.008 1.7E-07 53.0 4.3 34 88-121 21-54 (300)
455 cd03226 ABC_cobalt_CbiO_domain 96.0 0.0051 1.1E-07 50.9 2.9 25 100-124 25-49 (205)
456 PRK05057 aroK shikimate kinase 96.0 0.0054 1.2E-07 49.4 3.0 21 101-121 4-24 (172)
457 COG2019 AdkA Archaeal adenylat 96.0 0.02 4.3E-07 45.3 5.9 37 101-137 4-49 (189)
458 PRK13407 bchI magnesium chelat 96.0 0.0082 1.8E-07 53.5 4.3 42 78-121 8-49 (334)
459 PRK14527 adenylate kinase; Pro 96.0 0.0058 1.3E-07 50.0 3.1 22 100-121 5-26 (191)
460 PRK04182 cytidylate kinase; Pr 96.0 0.011 2.4E-07 47.5 4.8 19 103-121 2-20 (180)
461 CHL00081 chlI Mg-protoporyphyr 96.0 0.0083 1.8E-07 53.7 4.3 44 78-123 17-60 (350)
462 KOG2170 ATPase of the AAA+ sup 96.0 0.024 5.1E-07 49.1 6.8 91 78-172 82-189 (344)
463 cd03256 ABC_PhnC_transporter A 96.0 0.0052 1.1E-07 52.2 2.9 22 100-121 26-47 (241)
464 PRK15177 Vi polysaccharide exp 96.0 0.0057 1.2E-07 51.0 3.1 22 100-121 12-33 (213)
465 cd03292 ABC_FtsE_transporter F 96.0 0.0053 1.2E-07 51.1 2.9 24 100-123 26-49 (214)
466 cd03265 ABC_DrrA DrrA is the A 96.0 0.0053 1.2E-07 51.4 2.9 23 100-122 25-47 (220)
467 TIGR02902 spore_lonB ATP-depen 96.0 0.0087 1.9E-07 57.0 4.6 44 78-123 65-108 (531)
468 COG1419 FlhF Flagellar GTP-bin 96.0 0.041 8.8E-07 49.8 8.5 68 100-171 202-291 (407)
469 KOG0652 26S proteasome regulat 96.0 0.44 9.6E-06 40.7 14.1 181 78-263 171-390 (424)
470 PRK13947 shikimate kinase; Pro 96.0 0.0051 1.1E-07 49.2 2.6 19 103-121 3-21 (171)
471 PHA02575 1 deoxynucleoside mon 96.0 0.036 7.7E-07 46.3 7.6 19 103-121 2-20 (227)
472 cd03260 ABC_PstB_phosphate_tra 96.0 0.0054 1.2E-07 51.6 2.9 25 100-124 25-49 (227)
473 PRK13541 cytochrome c biogenes 96.0 0.0056 1.2E-07 50.3 2.9 25 100-124 25-49 (195)
474 COG1135 AbcC ABC-type metal io 96.0 0.026 5.7E-07 49.1 6.9 22 100-121 31-52 (339)
475 cd01129 PulE-GspE PulE/GspE Th 96.0 0.025 5.4E-07 48.9 7.0 95 81-177 62-165 (264)
476 cd03296 ABC_CysA_sulfate_impor 96.0 0.0055 1.2E-07 52.0 2.9 22 100-121 27-48 (239)
477 cd03224 ABC_TM1139_LivF_branch 96.0 0.0058 1.3E-07 51.2 3.0 23 100-122 25-47 (222)
478 TIGR02211 LolD_lipo_ex lipopro 96.0 0.0057 1.2E-07 51.2 2.9 24 100-123 30-53 (221)
479 PRK05537 bifunctional sulfate 95.9 0.011 2.4E-07 56.6 5.2 45 78-122 369-413 (568)
480 cd03257 ABC_NikE_OppD_transpor 95.9 0.0057 1.2E-07 51.4 2.9 25 100-124 30-54 (228)
481 cd03258 ABC_MetN_methionine_tr 95.9 0.0059 1.3E-07 51.6 2.9 22 100-121 30-51 (233)
482 PRK10584 putative ABC transpor 95.9 0.0059 1.3E-07 51.4 2.9 25 100-124 35-59 (228)
483 cd01136 ATPase_flagellum-secre 95.9 0.02 4.3E-07 50.9 6.3 22 100-121 68-89 (326)
484 cd03283 ABC_MutS-like MutS-lik 95.9 0.0061 1.3E-07 50.3 2.8 21 102-122 26-46 (199)
485 TIGR03864 PQQ_ABC_ATP ABC tran 95.9 0.006 1.3E-07 51.7 2.9 22 100-121 26-47 (236)
486 smart00072 GuKc Guanylate kina 95.9 0.015 3.3E-07 47.3 5.2 23 101-123 2-24 (184)
487 COG3854 SpoIIIAA ncharacterize 95.9 0.033 7.2E-07 46.5 7.0 30 90-121 128-157 (308)
488 TIGR01420 pilT_fam pilus retra 95.9 0.011 2.3E-07 53.2 4.6 97 101-201 122-232 (343)
489 TIGR03608 L_ocin_972_ABC putat 95.9 0.0062 1.3E-07 50.4 2.9 23 101-123 24-46 (206)
490 cd03301 ABC_MalK_N The N-termi 95.9 0.0062 1.4E-07 50.7 2.9 23 100-122 25-47 (213)
491 PF07726 AAA_3: ATPase family 95.9 0.0045 9.9E-08 46.9 1.8 18 104-121 2-19 (131)
492 PRK11248 tauB taurine transpor 95.9 0.0062 1.3E-07 52.3 2.9 22 100-121 26-47 (255)
493 PRK04328 hypothetical protein; 95.9 0.042 9.1E-07 47.0 8.0 22 100-121 22-43 (249)
494 PRK11629 lolD lipoprotein tran 95.9 0.0064 1.4E-07 51.4 2.9 24 100-123 34-57 (233)
495 PF13604 AAA_30: AAA domain; P 95.9 0.014 3.1E-07 48.0 4.9 33 87-121 6-38 (196)
496 PRK06002 fliI flagellum-specif 95.9 0.013 2.8E-07 54.1 5.0 21 101-121 165-185 (450)
497 PRK10247 putative ABC transpor 95.9 0.0065 1.4E-07 51.1 2.9 24 100-123 32-55 (225)
498 PRK12727 flagellar biosynthesi 95.9 0.026 5.6E-07 53.1 7.0 22 100-121 349-370 (559)
499 cd03219 ABC_Mj1267_LivG_branch 95.9 0.0064 1.4E-07 51.5 2.9 23 100-122 25-47 (236)
500 PF13245 AAA_19: Part of AAA d 95.9 0.008 1.7E-07 41.4 2.8 18 101-118 10-27 (76)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=9.2e-44 Score=346.36 Aligned_cols=285 Identities=35% Similarity=0.604 Sum_probs=233.4
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHHHHHHHHhhhchhhhhhh----------------cccCCCchhH-------------
Q 048597 2 AAEQQPRTRRTVRVKLWFKRVDNKVTEVAKLKQEGDLQIDR----------------LCLGGFSIKL------------- 52 (294)
Q Consensus 2 dae~~~~~~~~~~v~~Wl~~l~~~~~d~ed~ld~~~~~~~~----------------~~~~~~~~~~------------- 52 (294)
||+.++ .....+..|...+++++|++||.++.|..+... .|+.++|++.
T Consensus 46 d~~a~~--~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~ 123 (889)
T KOG4658|consen 46 DLDAKR--DDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSK 123 (889)
T ss_pred HHHhhc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHH
Confidence 566677 667899999999999999999999998765322 2333444441
Q ss_pred -HHHHH-h-hccccccccc-CCC----CCCCCcCce-eehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHh--
Q 048597 53 -KKERE-A-NKEVYEEVSE-DPA----VELPVERTV-IRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR-- 121 (294)
Q Consensus 53 -~~~i~-l-~~~~~~~~~~-~~~----~~~~~~~~~-vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v-- 121 (294)
+++++ + .++.|..+.. ..+ ...|..+.. ||.+..++.+.+.|..+ +..+++|+||||+||||||+++
T Consensus 124 ~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~VG~e~~~~kl~~~L~~d--~~~iv~i~GMGGvGKTTL~~qi~N 201 (889)
T KOG4658|consen 124 VLREVESLGSKGVFEVVGESLDPREKVETRPIQSESDVGLETMLEKLWNRLMED--DVGIVGIYGMGGVGKTTLARQIFN 201 (889)
T ss_pred HHHHHHHhccccceecccccccchhhcccCCCCccccccHHHHHHHHHHHhccC--CCCEEEEECCCcccHHHHHHHHhc
Confidence 44444 3 3444544432 111 222333333 99999999999999988 4499999999999999999999
Q ss_pred --------------------hChhHHHHHHHHHhCCCCCCcccCChHHHHHHHHHHhccCCeEEEEccccCccchhhhcC
Q 048597 122 --------------------ANLKKIQADIGKKIGLSTKSWQENSFEDKALDIAGILSRKRFVLLLDDIWEHINLNKLGV 181 (294)
Q Consensus 122 --------------------~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~l~~ 181 (294)
|+...++..|+..++.............++..|.+.|++|||+|||||||+..+|+.+..
T Consensus 202 ~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~ 281 (889)
T KOG4658|consen 202 KFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGV 281 (889)
T ss_pred ccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCC
Confidence 555568888888887755544555567899999999999999999999999999999999
Q ss_pred CcCCCCCCcEEEEecCChHHhhc-cCCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHH
Q 048597 182 PLQYLHLGSKIVFTTNSRVVCGQ-MEATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKT 259 (294)
Q Consensus 182 ~l~~~~~gs~iivTtr~~~v~~~-~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 259 (294)
++|...+||+|++|||+..||.. |++.. +++++|+.++||.||++.++.......+.+.++|++|+++|+|+|||+++
T Consensus 282 ~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~v 361 (889)
T KOG4658|consen 282 PFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNV 361 (889)
T ss_pred CCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHH
Confidence 99999999999999999999998 88766 99999999999999999998876666677999999999999999999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHhc-CCCCCcc
Q 048597 260 VGRAMRSISSIEEWEHAIKIILRY-GRGVFAF 290 (294)
Q Consensus 260 i~~~L~~~~~~~~w~~~l~~l~~~-~~~~~~~ 290 (294)
+|++|+.|.+.++|+++++.+.++ ..++++.
T Consensus 362 iG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~ 393 (889)
T KOG4658|consen 362 LGGLLACKKTVQEWRRALNVLKSSLAADFSGM 393 (889)
T ss_pred HHHHhcCCCcHHHHHHHHccccccccCCCCch
Confidence 999999999999999999999998 4444443
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=5.8e-35 Score=255.64 Aligned_cols=206 Identities=33% Similarity=0.560 Sum_probs=161.9
Q ss_pred hhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHh---------------------hChhHHHHHHHHHhCCCCCC
Q 048597 83 QELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR---------------------ANLKKIQADIGKKIGLSTKS 141 (294)
Q Consensus 83 r~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v---------------------~~~~~i~~~i~~~~~~~~~~ 141 (294)
|+.++++|.+.|.....+.++|+|+||||+||||||..+ ++...+...+...++.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 788999999999996568999999999999999999998 33345778888888765443
Q ss_pred c-ccCChHHHHHHHHHHhccCCeEEEEccccCccchhhhcCCcCCCCCCcEEEEecCChHHhhccCC-ce-eecCCCCHH
Q 048597 142 W-QENSFEDKALDIAGILSRKRFVLLLDDIWEHINLNKLGVPLQYLHLGSKIVFTTNSRVVCGQMEA-TM-LNASPLRDE 218 (294)
Q Consensus 142 ~-~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~-~~-~~l~~L~~~ 218 (294)
. ...+.......+.+.|.++++||||||||+...|+.+...++....|++||+|||+..++..+.. .. |++++|+.+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ 160 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEE 160 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HH
T ss_pred cccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3 45677889999999999999999999999999999998888877789999999999999877765 33 999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCC
Q 048597 219 EAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVGRAMRSISSIEEWEHAIKIILRYGRGVF 288 (294)
Q Consensus 219 ~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~~L~~~~~~~~w~~~l~~l~~~~~~~~ 288 (294)
+|++||++.++.......+.+.+.+++|+++|+|+|||++++|++|+.+.+..+|+++++++.....+..
T Consensus 161 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~ 230 (287)
T PF00931_consen 161 EALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESR 230 (287)
T ss_dssp HHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999998765423345556789999999999999999999999776678999999999988765443
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.97 E-value=5.7e-30 Score=260.27 Aligned_cols=203 Identities=16% Similarity=0.244 Sum_probs=160.1
Q ss_pred cCceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCC-----C--Cc-------
Q 048597 77 ERTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLST-----K--SW------- 142 (294)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~-----~--~~------- 142 (294)
...+||++..++++..+|..+..+.++|+||||||+||||||+.+|+.. ...+...+.+.. . ..
T Consensus 183 ~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l--~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL--SRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred cccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH--hhcCCeEEEeeccccccchhhcccccccc
Confidence 3568999999999999987666689999999999999999999996532 111111000000 0 00
Q ss_pred ------------------ccCChHHHHHHHHHHhccCCeEEEEccccCccchhhhcCCcCCCCCCcEEEEecCChHHhhc
Q 048597 143 ------------------QENSFEDKALDIAGILSRKRFVLLLDDIWEHINLNKLGVPLQYLHLGSKIVFTTNSRVVCGQ 204 (294)
Q Consensus 143 ------------------~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~ 204 (294)
...... ....+++.+.++|+||||||||+...|+.+.......+.||+||||||+..++..
T Consensus 261 ~~~~~~l~~~~l~~il~~~~~~~~-~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~ 339 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKDIKIY-HLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRA 339 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCCcccC-CHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHh
Confidence 000000 0135677889999999999999999999887665556789999999999999987
Q ss_pred cCCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 048597 205 MEATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVGRAMRSISSIEEWEHAIKIILRY 283 (294)
Q Consensus 205 ~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~~L~~~~~~~~w~~~l~~l~~~ 283 (294)
+++.. |+++.|++++||+||+++|+... ..++++.+++++|+++|+|+|||++++|++|+. ++..+|+.++++|+..
T Consensus 340 ~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~L~~~ 417 (1153)
T PLN03210 340 HGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPRLRNG 417 (1153)
T ss_pred cCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHHHHhC
Confidence 77767 99999999999999999998765 344568899999999999999999999999998 5789999999999874
Q ss_pred C
Q 048597 284 G 284 (294)
Q Consensus 284 ~ 284 (294)
.
T Consensus 418 ~ 418 (1153)
T PLN03210 418 L 418 (1153)
T ss_pred c
Confidence 3
No 4
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.44 E-value=4.4e-11 Score=103.61 Aligned_cols=179 Identities=18% Similarity=0.142 Sum_probs=109.7
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC------------------hhHHHHHHHHHhCCCCCCcccCChHHHHHHHHHHh---
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN------------------LKKIQADIGKKIGLSTKSWQENSFEDKALDIAGIL--- 158 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~------------------~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l--- 158 (294)
....+.|+|++|+|||||++.+++ ..++...+...++.+.. ..+.......+...+
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETE---GRDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHHHHHHH
Confidence 356899999999999999998832 22444556666655422 122223333343322
Q ss_pred --ccCCeEEEEccccCc--cchhhhcCCc--C-CCCCCcEEEEecCChHHhhc-------c--CCce-eecCCCCHHHHH
Q 048597 159 --SRKRFVLLLDDIWEH--INLNKLGVPL--Q-YLHLGSKIVFTTNSRVVCGQ-------M--EATM-LNASPLRDEEAW 221 (294)
Q Consensus 159 --~~kr~LlvlDdv~~~--~~~~~l~~~l--~-~~~~gs~iivTtr~~~v~~~-------~--~~~~-~~l~~L~~~~~~ 221 (294)
.++++++|+||++.. ..++.+.... . .......|++|......... . .... +++.+|+.++..
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~ 198 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETR 198 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHH
Confidence 678899999999873 3455443211 1 11222345566543321100 1 1122 789999999999
Q ss_pred HHHHHHhCCCCCCCC-CCHHHHHHHHHHhCCCChHHHHHHHHHHc------CC--CCHHHHHHHHHHHH
Q 048597 222 RLFEEAVGRYVLDSH-PDIPELAKTMAEECCCLPLALKTVGRAMR------SI--SSIEEWEHAIKIIL 281 (294)
Q Consensus 222 ~Lf~~~~~~~~~~~~-~~~~~~~~~I~~~c~GlPlai~~i~~~L~------~~--~~~~~w~~~l~~l~ 281 (294)
+++...+........ .--.+..+.|++.|+|.|..|..++..+- ++ -+.+.++.++..+.
T Consensus 199 ~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 199 EYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIGGEEVREVIAEID 267 (269)
T ss_pred HHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhh
Confidence 999877643221111 22346789999999999999999988761 11 45677777766654
No 5
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.43 E-value=1e-12 Score=110.94 Aligned_cols=176 Identities=19% Similarity=0.215 Sum_probs=93.2
Q ss_pred eeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhC------------------hhHHHHHH----------
Q 048597 80 VIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRAN------------------LKKIQADI---------- 131 (294)
Q Consensus 80 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~------------------~~~i~~~i---------- 131 (294)
|+||+.++++|.+++..+ ....+.|+|+.|+|||+|++.+.+ .......+
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 689999999999999876 568999999999999999999811 01111111
Q ss_pred HHHhC--CCCCCc------ccCChHHHHHHHHHHh--ccCCeEEEEccccCcc-ch---h----hhcCCcCC--CCCCcE
Q 048597 132 GKKIG--LSTKSW------QENSFEDKALDIAGIL--SRKRFVLLLDDIWEHI-NL---N----KLGVPLQY--LHLGSK 191 (294)
Q Consensus 132 ~~~~~--~~~~~~------~~~~~~~~~~~l~~~l--~~kr~LlvlDdv~~~~-~~---~----~l~~~l~~--~~~gs~ 191 (294)
...++ ...... ...........+.+.+ .+++++||+||+.... .. . .+...+.. ......
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 158 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVS 158 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEE
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCce
Confidence 11111 111000 0111222333333333 3456999999997644 11 1 12222211 122334
Q ss_pred EEEecCChHHhhc--------cCCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHH
Q 048597 192 IVFTTNSRVVCGQ--------MEATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKT 259 (294)
Q Consensus 192 iivTtr~~~v~~~--------~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 259 (294)
+|+++.+...... .+... +.+++|+.+++++++...+... ... +.-.+..++|+..+||+|..|..
T Consensus 159 ~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 159 IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 5555555444322 12222 9999999999999999876433 112 22235569999999999998864
No 6
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.29 E-value=5.3e-10 Score=102.28 Aligned_cols=205 Identities=17% Similarity=0.137 Sum_probs=121.5
Q ss_pred CcCceeehhHHHHHHHHHHhcC--CCCceEEEEEcCCCChHHHHHHHhhCh---------------------hHHHHHHH
Q 048597 76 VERTVIRQELLLDRVWRFVTDQ--ERNRGIIGLYGTGGVGKTTLLKQRANL---------------------KKIQADIG 132 (294)
Q Consensus 76 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~~GiGKTtLa~~v~~~---------------------~~i~~~i~ 132 (294)
.++.++||++++++|...+... ......+.|+|++|+|||++++.+.+. ..+...+.
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 4567899999999999998553 234566889999999999999998432 23445555
Q ss_pred HHhCCCCCCcccCChHHHHHHHHHHhc--cCCeEEEEccccCcc------chhhhcCCcCCCCCCcE--EEEecCChHH-
Q 048597 133 KKIGLSTKSWQENSFEDKALDIAGILS--RKRFVLLLDDIWEHI------NLNKLGVPLQYLHLGSK--IVFTTNSRVV- 201 (294)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlvlDdv~~~~------~~~~l~~~l~~~~~gs~--iivTtr~~~v- 201 (294)
.++..........+...+...+.+.+. ++..+||||+++... .+..+...+.. ..+++ +|.++....+
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchh
Confidence 655431111122345666667777664 456899999997632 22222222211 12333 5555554332
Q ss_pred -------hhccCCceeecCCCCHHHHHHHHHHHhCC---CCCCCCCCHHHHHHHHHHhCCCChHHHHHHHHHH--c---C
Q 048597 202 -------CGQMEATMLNASPLRDEEAWRLFEEAVGR---YVLDSHPDIPELAKTMAEECCCLPLALKTVGRAM--R---S 266 (294)
Q Consensus 202 -------~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~---~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~~L--~---~ 266 (294)
........+.+.+++.++..+++..++.. .......-+..+++......|..+.|+..+-... . +
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~ 266 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREG 266 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 22222333899999999999999887632 1111222223333333333566778877765422 1 1
Q ss_pred C--CCHHHHHHHHHHHH
Q 048597 267 I--SSIEEWEHAIKIIL 281 (294)
Q Consensus 267 ~--~~~~~w~~~l~~l~ 281 (294)
+ -+.++.+.+++.+.
T Consensus 267 ~~~I~~~~v~~a~~~~~ 283 (394)
T PRK00411 267 SRKVTEEDVRKAYEKSE 283 (394)
T ss_pred CCCcCHHHHHHHHHHHH
Confidence 1 35677877777663
No 7
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.14 E-value=1e-09 Score=96.93 Aligned_cols=190 Identities=20% Similarity=0.192 Sum_probs=107.2
Q ss_pred CceeehhHHHHHHHHHHhcC---CCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHHHHHHH
Q 048597 78 RTVIRQELLLDRVWRFVTDQ---ERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFEDKALDI 154 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l 154 (294)
..|+|+++.++.|..++... ......+.++|++|+|||+||+.+.+.... .+..... ........+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~------~~~~~~~-~~~~~~~~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV------NLKITSG-PALEKPGDLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC------CEEEecc-chhcCchhHHHHH
Confidence 35899999999999888642 224567889999999999999987442210 0000000 0011122222222
Q ss_pred HHHhccCCeEEEEccccCc--cchhhhcCCcC-------------------CCCCCcEEEEecCChHHh----hccCCce
Q 048597 155 AGILSRKRFVLLLDDIWEH--INLNKLGVPLQ-------------------YLHLGSKIVFTTNSRVVC----GQMEATM 209 (294)
Q Consensus 155 ~~~l~~kr~LlvlDdv~~~--~~~~~l~~~l~-------------------~~~~gs~iivTtr~~~v~----~~~~~~~ 209 (294)
.. + +...++++||+... ...+.+...+. .....+-|..||+...+. ..+ ...
T Consensus 77 ~~-~-~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~-~~~ 153 (305)
T TIGR00635 77 TN-L-EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRF-GII 153 (305)
T ss_pred Hh-c-ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhc-ceE
Confidence 22 1 34567888888652 11111111110 001133444556553332 222 122
Q ss_pred eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHHHHHc------C-C-CCHHHHHHHHHHH
Q 048597 210 LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVGRAMR------S-I-SSIEEWEHAIKII 280 (294)
Q Consensus 210 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~~L~------~-~-~~~~~w~~~l~~l 280 (294)
+++.+++.++..+++.+.+.......+ .+....|++.|+|.|-.+..++..+. . . -+.+..+.+++.+
T Consensus 154 ~~l~~l~~~e~~~il~~~~~~~~~~~~---~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 154 LRLEFYTVEELAEIVSRSAGLLNVEIE---PEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKALEML 229 (305)
T ss_pred EEeCCCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 889999999999999988764332222 35678899999999977665554331 1 1 3455556665554
No 8
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.06 E-value=3.5e-08 Score=89.30 Aligned_cols=204 Identities=14% Similarity=0.104 Sum_probs=117.3
Q ss_pred cCceeehhHHHHHHHHHHhcC--CCCceEEEEEcCCCChHHHHHHHhhCh-------------------------hHHHH
Q 048597 77 ERTVIRQELLLDRVWRFVTDQ--ERNRGIIGLYGTGGVGKTTLLKQRANL-------------------------KKIQA 129 (294)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~~GiGKTtLa~~v~~~-------------------------~~i~~ 129 (294)
+..++||+.++++|..+|... ......+.|+|++|+|||++++.+++. ..+..
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 457899999999999998752 224568999999999999999988431 23445
Q ss_pred HHHHHh---CCCCCCcccCChHHHHHHHHHHhc--cCCeEEEEccccCcc-c----hhhhcCCc-CCCC--CCcEEEEec
Q 048597 130 DIGKKI---GLSTKSWQENSFEDKALDIAGILS--RKRFVLLLDDIWEHI-N----LNKLGVPL-QYLH--LGSKIVFTT 196 (294)
Q Consensus 130 ~i~~~~---~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlvlDdv~~~~-~----~~~l~~~l-~~~~--~gs~iivTt 196 (294)
.+..++ +.... ....+..+....+.+.+. +++++||||+++... . +..+.... .... ....+|.++
T Consensus 94 ~i~~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 94 ELANQLRGSGEEVP-TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHhhcCCCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 555555 22111 112234455556666663 567899999998641 1 12221110 1111 222344444
Q ss_pred CChHH--------hhccCCceeecCCCCHHHHHHHHHHHhCC--CCCCCCCCHHHHHHHHHHhCCCChHHHHHHH-HHH-
Q 048597 197 NSRVV--------CGQMEATMLNASPLRDEEAWRLFEEAVGR--YVLDSHPDIPELAKTMAEECCCLPLALKTVG-RAM- 264 (294)
Q Consensus 197 r~~~v--------~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~-~~L- 264 (294)
..... ...+....+++.|++.++..+++..++.. ......++..+....++..+.|.|-.+..+. ...
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 43322 12222223899999999999999987631 1111233344455667777788885443322 111
Q ss_pred ---c-C--CCCHHHHHHHHHHHH
Q 048597 265 ---R-S--ISSIEEWEHAIKIIL 281 (294)
Q Consensus 265 ---~-~--~~~~~~w~~~l~~l~ 281 (294)
. + .-+.++.+.+.+.+.
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKIE 275 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHH
Confidence 1 1 145566666665553
No 9
>PRK06893 DNA replication initiation factor; Validated
Probab=99.05 E-value=2.4e-09 Score=90.56 Aligned_cols=152 Identities=13% Similarity=0.097 Sum_probs=89.4
Q ss_pred CceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHHHHHHHHHHhccCCeEEEEccccCc---cch
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFEDKALDIAGILSRKRFVLLLDDIWEH---INL 176 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~---~~~ 176 (294)
..+.+.|+|++|+|||+|++.+.+...-.. .....++.. ........+.+.+. +.-+|+|||+|.. ..|
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~--~~~~y~~~~-----~~~~~~~~~~~~~~-~~dlLilDDi~~~~~~~~~ 109 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQ--RTAIYIPLS-----KSQYFSPAVLENLE-QQDLVCLDDLQAVIGNEEW 109 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcC--CCeEEeeHH-----HhhhhhHHHHhhcc-cCCEEEEeChhhhcCChHH
Confidence 346789999999999999999865421110 000001000 00111112222232 3358999999873 445
Q ss_pred hh-hcCCcCCC-CCCcEEE-EecCC---------hHHhhccCCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHH
Q 048597 177 NK-LGVPLQYL-HLGSKIV-FTTNS---------RVVCGQMEATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELA 243 (294)
Q Consensus 177 ~~-l~~~l~~~-~~gs~ii-vTtr~---------~~v~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~ 243 (294)
.. +...+... ..|..++ +|++. +.+...+.... ++++++++++.++++++.+.......+ .++.
T Consensus 110 ~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~---~~v~ 186 (229)
T PRK06893 110 ELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELS---DEVA 186 (229)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHH
Confidence 52 22222221 2355554 44543 35556666555 999999999999999998865442232 3677
Q ss_pred HHHHHhCCCChHHHHHHHH
Q 048597 244 KTMAEECCCLPLALKTVGR 262 (294)
Q Consensus 244 ~~I~~~c~GlPlai~~i~~ 262 (294)
.-|++.+.|-.-.+..+-.
T Consensus 187 ~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 187 NFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHHhccCCHHHHHHHHH
Confidence 8899999887765555443
No 10
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.05 E-value=6.9e-09 Score=92.60 Aligned_cols=173 Identities=20% Similarity=0.139 Sum_probs=100.4
Q ss_pred CceeehhHHHHHHHHHHhc---CCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHHHHHHH
Q 048597 78 RTVIRQELLLDRVWRFVTD---QERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFEDKALDI 154 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l 154 (294)
..|+|+++.++.+..++.. .......+.++|++|+||||||+.+.+.... .+...... .......+.. +
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~------~~~~~~~~-~~~~~~~l~~-~ 96 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV------NIRITSGP-ALEKPGDLAA-I 96 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCC------CeEEEecc-cccChHHHHH-H
Confidence 5689999999998887764 2335678899999999999999987543221 01000000 0111122222 2
Q ss_pred HHHhccCCeEEEEccccCcc--chhhhcCCc---------CC---------C-CCCcEEEEecCChHHh----hccCCce
Q 048597 155 AGILSRKRFVLLLDDIWEHI--NLNKLGVPL---------QY---------L-HLGSKIVFTTNSRVVC----GQMEATM 209 (294)
Q Consensus 155 ~~~l~~kr~LlvlDdv~~~~--~~~~l~~~l---------~~---------~-~~gs~iivTtr~~~v~----~~~~~~~ 209 (294)
...+ +...+|++||++... ..+.+...+ .. . ...+-|..|++...+. ..+ ...
T Consensus 97 l~~l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf-~~~ 174 (328)
T PRK00080 97 LTNL-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRF-GIV 174 (328)
T ss_pred HHhc-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhc-Cee
Confidence 2222 345688899886521 111111100 00 0 1123344555543332 222 122
Q ss_pred eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHHHH
Q 048597 210 LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVGRA 263 (294)
Q Consensus 210 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~~ 263 (294)
+++.+++.++..+++.+.+.......++ +....|++.|+|.|-.+..+...
T Consensus 175 ~~l~~~~~~e~~~il~~~~~~~~~~~~~---~~~~~ia~~~~G~pR~a~~~l~~ 225 (328)
T PRK00080 175 QRLEFYTVEELEKIVKRSARILGVEIDE---EGALEIARRSRGTPRIANRLLRR 225 (328)
T ss_pred eecCCCCHHHHHHHHHHHHHHcCCCcCH---HHHHHHHHHcCCCchHHHHHHHH
Confidence 8999999999999999887654433322 56799999999999766655543
No 11
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.04 E-value=2e-09 Score=99.01 Aligned_cols=176 Identities=19% Similarity=0.168 Sum_probs=101.3
Q ss_pred CceeehhHHHHH---HHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHHHHHHH
Q 048597 78 RTVIRQELLLDR---VWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFEDKALDI 154 (294)
Q Consensus 78 ~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l 154 (294)
..+||.+..+.. +..++... ....+.++|++|+||||||+.+.+.... ....+........+........
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~~~~-----~~~~l~a~~~~~~~ir~ii~~~ 84 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGATDA-----PFEALSAVTSGVKDLREVIEEA 84 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEecccccHHHHHHHHHHH
Confidence 457888877655 77777665 5667889999999999999988542210 0000111100111122222222
Q ss_pred HHHh-ccCCeEEEEccccCc--cchhhhcCCcCCCCCCcEEEE--ecCChHHh---hcc-CCceeecCCCCHHHHHHHHH
Q 048597 155 AGIL-SRKRFVLLLDDIWEH--INLNKLGVPLQYLHLGSKIVF--TTNSRVVC---GQM-EATMLNASPLRDEEAWRLFE 225 (294)
Q Consensus 155 ~~~l-~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v~---~~~-~~~~~~l~~L~~~~~~~Lf~ 225 (294)
.... .+++.+|++|+++.. ...+.+...+. .|..+++ ||.+.... ... .+..+.+.+++.++...++.
T Consensus 85 ~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~ 161 (413)
T PRK13342 85 RQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLK 161 (413)
T ss_pred HHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHH
Confidence 2222 457889999999863 34444443332 2444444 33333211 111 12239999999999999998
Q ss_pred HHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHHHH
Q 048597 226 EAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVGRA 263 (294)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~~ 263 (294)
+.+.........--.+....|++.|+|.|..+..+...
T Consensus 162 ~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 162 RALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred HHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 86643211100222456788999999999877655444
No 12
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.01 E-value=1.3e-09 Score=96.03 Aligned_cols=158 Identities=21% Similarity=0.201 Sum_probs=90.8
Q ss_pred HHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHHHHHHHH-HHhccCCeEEEEc
Q 048597 90 VWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFEDKALDIA-GILSRKRFVLLLD 168 (294)
Q Consensus 90 l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~kr~LlvlD 168 (294)
|-.++..+ .+....+|||+|+||||||+.+........ .. ++.......+.....+.-+ ....+++.+|++|
T Consensus 39 lrr~v~~~--~l~SmIl~GPPG~GKTTlA~liA~~~~~~f---~~--~sAv~~gvkdlr~i~e~a~~~~~~gr~tiLflD 111 (436)
T COG2256 39 LRRAVEAG--HLHSMILWGPPGTGKTTLARLIAGTTNAAF---EA--LSAVTSGVKDLREIIEEARKNRLLGRRTILFLD 111 (436)
T ss_pred HHHHHhcC--CCceeEEECCCCCCHHHHHHHHHHhhCCce---EE--eccccccHHHHHHHHHHHHHHHhcCCceEEEEe
Confidence 33444455 788899999999999999988743211110 00 1100001122222233332 2235889999999
Q ss_pred cccC--ccchhhhcCCcCCCCCCcEEEE--ecCChHH----hhccCCceeecCCCCHHHHHHHHHHHhCCCC--CC-CCC
Q 048597 169 DIWE--HINLNKLGVPLQYLHLGSKIVF--TTNSRVV----CGQMEATMLNASPLRDEEAWRLFEEAVGRYV--LD-SHP 237 (294)
Q Consensus 169 dv~~--~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v----~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~--~~-~~~ 237 (294)
+|+. ..+-+.+ ||...+|.-|+| ||.|... +-...+..+.+++|+.++...++.+.+.... .. ...
T Consensus 112 EIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~ 188 (436)
T COG2256 112 EIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQII 188 (436)
T ss_pred hhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccc
Confidence 9986 2333333 456667877765 4444432 2233344499999999999999998552221 11 111
Q ss_pred CH-HHHHHHHHHhCCCChHHH
Q 048597 238 DI-PELAKTMAEECCCLPLAL 257 (294)
Q Consensus 238 ~~-~~~~~~I~~~c~GlPlai 257 (294)
.+ .+.-..++..++|---++
T Consensus 189 ~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 189 VLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred cCCHHHHHHHHHhcCchHHHH
Confidence 12 345677888888865443
No 13
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.98 E-value=1.3e-08 Score=102.61 Aligned_cols=180 Identities=16% Similarity=0.188 Sum_probs=107.9
Q ss_pred CcCceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhh----------------ChhHHHHHHHHHhCCCC
Q 048597 76 VERTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRA----------------NLKKIQADIGKKIGLST 139 (294)
Q Consensus 76 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~----------------~~~~i~~~i~~~~~~~~ 139 (294)
..+.+|-|..-.+ .|... ...+++.|+||+|.||||++.... +...+...+...+....
T Consensus 12 ~~~~~~~R~rl~~----~l~~~-~~~~~~~v~apaG~GKTtl~~~~~~~~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~ 86 (903)
T PRK04841 12 RLHNTVVRERLLA----KLSGA-NNYRLVLVTSPAGYGKTTLISQWAAGKNNLGWYSLDESDNQPERFASYLIAALQQAT 86 (903)
T ss_pred CccccCcchHHHH----HHhcc-cCCCeEEEECCCCCCHHHHHHHHHHhCCCeEEEecCcccCCHHHHHHHHHHHHHHhc
Confidence 3456677775444 44332 257899999999999999999971 11233445555553111
Q ss_pred CC-----------cccCChHHHHHHHHHHhc--cCCeEEEEccccCcc--chh-hhcCCcCCCCCCcEEEEecCChHHhh
Q 048597 140 KS-----------WQENSFEDKALDIAGILS--RKRFVLLLDDIWEHI--NLN-KLGVPLQYLHLGSKIVFTTNSRVVCG 203 (294)
Q Consensus 140 ~~-----------~~~~~~~~~~~~l~~~l~--~kr~LlvlDdv~~~~--~~~-~l~~~l~~~~~gs~iivTtr~~~v~~ 203 (294)
.. ....+.......+...+. +.+++|||||++... ... .+...+.....+.++|+|||......
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~ 166 (903)
T PRK04841 87 NGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLG 166 (903)
T ss_pred CcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCc
Confidence 00 000122233333444442 678999999997632 222 22222223334568889999843211
Q ss_pred c--cC-Cce-eecC----CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHHHHHcC
Q 048597 204 Q--ME-ATM-LNAS----PLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVGRAMRS 266 (294)
Q Consensus 204 ~--~~-~~~-~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~~L~~ 266 (294)
. .. ... ..+. +|+.+++.++|....+..- -.+....|.+.|+|.|+++..++..+..
T Consensus 167 ~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 167 IANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI------EAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred hHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC------CHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 1 11 111 4454 9999999999987655321 1245688999999999999998877654
No 14
>PF05729 NACHT: NACHT domain
Probab=98.97 E-value=4.4e-09 Score=83.91 Aligned_cols=70 Identities=24% Similarity=0.341 Sum_probs=47.6
Q ss_pred ccCCeEEEEccccCccc---------hhhhc-CCcCC-CCCCcEEEEecCChHH---hhccCCce-eecCCCCHHHHHHH
Q 048597 159 SRKRFVLLLDDIWEHIN---------LNKLG-VPLQY-LHLGSKIVFTTNSRVV---CGQMEATM-LNASPLRDEEAWRL 223 (294)
Q Consensus 159 ~~kr~LlvlDdv~~~~~---------~~~l~-~~l~~-~~~gs~iivTtr~~~v---~~~~~~~~-~~l~~L~~~~~~~L 223 (294)
..++++||+|++++... +..+. ..++. ...++++++|+|.... ........ +++.+|++++..++
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQY 158 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence 57899999999976321 22222 11222 2457899999998766 33333334 99999999999999
Q ss_pred HHHHh
Q 048597 224 FEEAV 228 (294)
Q Consensus 224 f~~~~ 228 (294)
+.+.+
T Consensus 159 ~~~~f 163 (166)
T PF05729_consen 159 LRKYF 163 (166)
T ss_pred HHHHh
Confidence 87754
No 15
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.89 E-value=2.2e-08 Score=84.42 Aligned_cols=168 Identities=17% Similarity=0.182 Sum_probs=95.9
Q ss_pred hhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHHHHHHHHHHhccCC
Q 048597 83 QELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFEDKALDIAGILSRKR 162 (294)
Q Consensus 83 r~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr 162 (294)
.+..++.+..++... ....+.|+|++|+|||+||+.+.+...-.. ...+.++.. +.......+...+.+ .
T Consensus 22 ~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKT~la~~~~~~~~~~~--~~~~~i~~~-----~~~~~~~~~~~~~~~-~ 91 (226)
T TIGR03420 22 NAELLAALRQLAAGK--GDRFLYLWGESGSGKSHLLQAACAAAEERG--KSAIYLPLA-----ELAQADPEVLEGLEQ-A 91 (226)
T ss_pred cHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHHHHhcC--CcEEEEeHH-----HHHHhHHHHHhhccc-C
Confidence 445677777765543 567899999999999999998864321000 000001000 000111122233333 3
Q ss_pred eEEEEccccCcc---chh-hhcCCcCC-CCCCcEEEEecCChH---------HhhccCCce-eecCCCCHHHHHHHHHHH
Q 048597 163 FVLLLDDIWEHI---NLN-KLGVPLQY-LHLGSKIVFTTNSRV---------VCGQMEATM-LNASPLRDEEAWRLFEEA 227 (294)
Q Consensus 163 ~LlvlDdv~~~~---~~~-~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~~-~~l~~L~~~~~~~Lf~~~ 227 (294)
-+|||||++... .|. .+...+.. ...+..+|+|++... ....+.... +++.++++++...++...
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~ 171 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSR 171 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHH
Confidence 489999997632 232 33322221 122347888887532 222333233 999999999999998875
Q ss_pred hCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHHHH
Q 048597 228 VGRYVLDSHPDIPELAKTMAEECCCLPLALKTVGRA 263 (294)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~~ 263 (294)
+.......+ .+....+++.+.|.|..+..+...
T Consensus 172 ~~~~~~~~~---~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 172 AARRGLQLP---DEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHH
Confidence 533222222 355678888899999888776543
No 16
>PF13173 AAA_14: AAA domain
Probab=98.88 E-value=2.7e-09 Score=81.91 Aligned_cols=116 Identities=23% Similarity=0.167 Sum_probs=71.4
Q ss_pred ceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccC--ChHHHHHHHHHHhccCCeEEEEccccCccchhh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQEN--SFEDKALDIAGILSRKRFVLLLDDIWEHINLNK 178 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~ 178 (294)
.+++.|.|+.|+|||||++++....... ...+.+........ ...+....+.+....+..+++||++....+|..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~---~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~~~~~ 78 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPP---ENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYLPDWED 78 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc---ccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhhccHHH
Confidence 4789999999999999998875322200 01111111110000 000123334444445788999999999888888
Q ss_pred hcCCcCCCCCCcEEEEecCChHHhhc------cCCce-eecCCCCHHH
Q 048597 179 LGVPLQYLHLGSKIVFTTNSRVVCGQ------MEATM-LNASPLRDEE 219 (294)
Q Consensus 179 l~~~l~~~~~gs~iivTtr~~~v~~~------~~~~~-~~l~~L~~~~ 219 (294)
....+.+.....+|++|+.+...... .+... +++.||+-.|
T Consensus 79 ~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 79 ALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred HHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 77776665556799999987765422 12223 8999998765
No 17
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.85 E-value=1.1e-07 Score=85.95 Aligned_cols=177 Identities=18% Similarity=0.138 Sum_probs=104.9
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhH--------------HHHHHHHHhCCCCCCc-
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKK--------------IQADIGKKIGLSTKSW- 142 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~--------------i~~~i~~~~~~~~~~~- 142 (294)
..++|.+..++.+.+.+..+. -...+.++|+.|+||||+|+.+..... .-..+...........
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~ 94 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEID 94 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEec
Confidence 568999999999999887652 345679999999999999998832110 1111111111000000
Q ss_pred --ccCChHHHHHHHHHHh-----ccCCeEEEEccccCc--cchhhhcCCcCCCCCCcEEEEecCChH-HhhccC--Ccee
Q 048597 143 --QENSFEDKALDIAGIL-----SRKRFVLLLDDIWEH--INLNKLGVPLQYLHLGSKIVFTTNSRV-VCGQME--ATML 210 (294)
Q Consensus 143 --~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~--~~~~ 210 (294)
.....++ ...+.+.+ .+++-++|+|+++.. ..++.+...+.......++|++|.+.. +..... +..+
T Consensus 95 ~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~ 173 (363)
T PRK14961 95 AASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQF 173 (363)
T ss_pred ccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEE
Confidence 0112222 22333332 245569999999873 346666555554444566777665432 322111 2339
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHH
Q 048597 211 NASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKT 259 (294)
Q Consensus 211 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 259 (294)
++.+++.++....+.+.+....... -.+....|++.++|.|-.+..
T Consensus 174 ~~~~l~~~el~~~L~~~~~~~g~~i---~~~al~~ia~~s~G~~R~al~ 219 (363)
T PRK14961 174 KLKIISEEKIFNFLKYILIKESIDT---DEYALKLIAYHAHGSMRDALN 219 (363)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 9999999999988887664432111 125568899999998864433
No 18
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.83 E-value=8.2e-08 Score=92.00 Aligned_cols=178 Identities=15% Similarity=0.120 Sum_probs=107.2
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChh--------------HHHHHHHHHhCCC---CC
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLK--------------KIQADIGKKIGLS---TK 140 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~--------------~i~~~i~~~~~~~---~~ 140 (294)
..+||.+..++.|.+++..+. -...+.++|+.|+||||+++.+.... .....|...-... .+
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEID 94 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMD 94 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEec
Confidence 467999999999999988762 24566799999999999998772111 1111111110000 00
Q ss_pred CcccCChHHHHHHHHHH----hccCCeEEEEccccCc--cchhhhcCCcCCCCCCcEEEEecCChH-Hhhc--cCCceee
Q 048597 141 SWQENSFEDKALDIAGI----LSRKRFVLLLDDIWEH--INLNKLGVPLQYLHLGSKIVFTTNSRV-VCGQ--MEATMLN 211 (294)
Q Consensus 141 ~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~--~~~~~~~ 211 (294)
.......++....+... ..++.-++|||+++.. ..++.+...+.......++|++|++.. +... -.+..++
T Consensus 95 Aas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~ 174 (830)
T PRK07003 95 AASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFN 174 (830)
T ss_pred ccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEe
Confidence 00112233333322221 1345568999999873 457777666655444667777776643 2211 1233499
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCCh-HHHHH
Q 048597 212 ASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLP-LALKT 259 (294)
Q Consensus 212 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-lai~~ 259 (294)
+.+++.++..+.+.+.+..+..... .+..+.|++.|+|.. -++..
T Consensus 175 Fk~Ls~eeIv~~L~~Il~~EgI~id---~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 175 LKQMPAGHIVSHLERILGEERIAFE---PQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred cCCcCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999999887755442222 355688999998855 34444
No 19
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=1e-07 Score=92.90 Aligned_cols=177 Identities=16% Similarity=0.116 Sum_probs=106.3
Q ss_pred CceeehhHHHHHHHHHHhcCCCCce-EEEEEcCCCChHHHHHHHhhChhH--------------HHHHHHHHhC---CCC
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRG-IIGLYGTGGVGKTTLLKQRANLKK--------------IQADIGKKIG---LST 139 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~--------------i~~~i~~~~~---~~~ 139 (294)
..+||.+..+..|.+++..+ ++. .+.++|+.|+||||+|+.+..... .-..+..... +..
T Consensus 16 ddIIGQe~Iv~~LknaI~~~--rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEi 93 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQ--RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEV 93 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhC--CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEe
Confidence 46899999999999998876 444 568999999999999998832110 0011111100 000
Q ss_pred CCcccCChHHHHHHHHHHh-----ccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEecCC-hHHhh--ccCCce
Q 048597 140 KSWQENSFEDKALDIAGIL-----SRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTTNS-RVVCG--QMEATM 209 (294)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~--~~~~~~ 209 (294)
........+.. +.+.+.+ .+++-++|||+++. ....+.+...+.......++|++|.+ ..+.. ...+..
T Consensus 94 dAas~~kVDdI-ReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~ 172 (944)
T PRK14949 94 DAASRTKVDDT-RELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQ 172 (944)
T ss_pred ccccccCHHHH-HHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheE
Confidence 00001122222 2222222 46677999999976 45666666555443345566655544 33321 122344
Q ss_pred eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHH
Q 048597 210 LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTV 260 (294)
Q Consensus 210 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i 260 (294)
|++.+|+.++....+.+.+....... -.+..+.|++.++|.|--+..+
T Consensus 173 f~fkpLs~eEI~~~L~~il~~EgI~~---edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 173 FNLKSLTQDEIGTQLNHILTQEQLPF---EAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999999888764432112 2356688999999988655444
No 20
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.79 E-value=1.2e-07 Score=89.59 Aligned_cols=177 Identities=15% Similarity=0.136 Sum_probs=107.4
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhH-------------------HHHHHHH-----
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKK-------------------IQADIGK----- 133 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-------------------i~~~i~~----- 133 (294)
..+||.+..+..|.+++..+. -...+.++|+.|+||||+|+.+..... .-..|..
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpD 94 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVD 94 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCc
Confidence 468999999999999998762 235678999999999999988821110 0111110
Q ss_pred HhCCCCCCcccCChHHHHHHHHHH----hccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEecC-ChHHhhcc-
Q 048597 134 KIGLSTKSWQENSFEDKALDIAGI----LSRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTTN-SRVVCGQM- 205 (294)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~~~~- 205 (294)
.+.+... .....++..+.+... ..++.-++|||+++. ...++.+...+..-...+.+|++|. ...+...+
T Consensus 95 viEIdAa--s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIr 172 (700)
T PRK12323 95 YIEMDAA--SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVL 172 (700)
T ss_pred ceEeccc--ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHH
Confidence 0001000 112233333333222 145667999999986 3566667666654444455555554 44442221
Q ss_pred -CCceeecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHH
Q 048597 206 -EATMLNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTV 260 (294)
Q Consensus 206 -~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i 260 (294)
.+..+++.+++.++..+.+.+.+..+..... .+..+.|++.++|.|..+..+
T Consensus 173 SRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d---~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 173 SRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE---VNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHhcccCCCChHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 2333999999999999988877654332221 245588999999999655544
No 21
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.79 E-value=1.9e-07 Score=83.45 Aligned_cols=176 Identities=16% Similarity=0.072 Sum_probs=98.1
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhH----------HH-HHHH----HHhCCCCCCc
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKK----------IQ-ADIG----KKIGLSTKSW 142 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~----------i~-~~i~----~~~~~~~~~~ 142 (294)
..++|++..++.+..++..+ ..+.+.++|++|+||||+|+.+.+... +. ..+. ..+.. ....
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~ 91 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVE-DPRF 91 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhc-Ccch
Confidence 46789999999999988776 455788999999999999988732110 00 0000 00000 0000
Q ss_pred ---------ccCChHHHHHHH-HHHh-----ccCCeEEEEccccCc--cchhhhcCCcCCCCCCcEEEEecCChH-Hhhc
Q 048597 143 ---------QENSFEDKALDI-AGIL-----SRKRFVLLLDDIWEH--INLNKLGVPLQYLHLGSKIVFTTNSRV-VCGQ 204 (294)
Q Consensus 143 ---------~~~~~~~~~~~l-~~~l-----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~ 204 (294)
...........+ .... ...+-+|++||+... .....+...+......+++|+|+.+.. +...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~ 171 (337)
T PRK12402 92 AHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPP 171 (337)
T ss_pred hhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchh
Confidence 000001111111 1111 134558999999753 223334333332333467777775432 2111
Q ss_pred cC--CceeecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHH
Q 048597 205 ME--ATMLNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKT 259 (294)
Q Consensus 205 ~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 259 (294)
.. +..+.+.+++.++...++.+.+.......+ .+....+++.++|.+-.+..
T Consensus 172 L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~---~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 172 IRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD---DDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 11 222889999999999888887644332222 35668888888887655544
No 22
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=1.9e-07 Score=85.85 Aligned_cols=177 Identities=15% Similarity=0.079 Sum_probs=105.5
Q ss_pred CceeehhHHHHHHHHHHhcCCCCc-eEEEEEcCCCChHHHHHHHhhChh--------------HHHHHHHHHhCCCCCCc
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNR-GIIGLYGTGGVGKTTLLKQRANLK--------------KIQADIGKKIGLSTKSW 142 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~--------------~i~~~i~~~~~~~~~~~ 142 (294)
..++|.+..+..|..++..+ .. ..+.++|+.|+||||+|+.+.... ..-..|...........
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~--ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEI 95 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSG--KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEI 95 (484)
T ss_pred HHHhChHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceee
Confidence 45799999999999998876 44 468999999999999999982211 01112221111000000
Q ss_pred ---ccCChHHHHHHHHHHh-----ccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEecCC-hHHhh--ccCCce
Q 048597 143 ---QENSFEDKALDIAGIL-----SRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTTNS-RVVCG--QMEATM 209 (294)
Q Consensus 143 ---~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~--~~~~~~ 209 (294)
.....+.. ..+.+.+ .++.-++|+|+++. ...++.+...+........+|++|.. ..+.. ...+..
T Consensus 96 daas~~gVd~I-ReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~ 174 (484)
T PRK14956 96 DAASNRGIENI-RELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQD 174 (484)
T ss_pred chhhcccHHHH-HHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhhe
Confidence 11112222 2222222 35667999999986 45677776665443334454544443 33322 122334
Q ss_pred eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHH
Q 048597 210 LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTV 260 (294)
Q Consensus 210 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i 260 (294)
|.+.+++.++..+.+.+.+...+..-. .+....|++.++|.+--+..+
T Consensus 175 ~~f~~ls~~~i~~~L~~i~~~Egi~~e---~eAL~~Ia~~S~Gd~RdAL~l 222 (484)
T PRK14956 175 FIFKKVPLSVLQDYSEKLCKIENVQYD---QEGLFWIAKKGDGSVRDMLSF 222 (484)
T ss_pred eeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCChHHHHHHH
Confidence 999999999998888887654432221 356688999999998544433
No 23
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.78 E-value=5.8e-08 Score=96.30 Aligned_cols=183 Identities=14% Similarity=0.173 Sum_probs=106.6
Q ss_pred eeehhHHHHHHHHHHhcC-CCCceEEEEEcCCCChHHHHHHHh---------------hC----------hhHHHHH---
Q 048597 80 VIRQELLLDRVWRFVTDQ-ERNRGIIGLYGTGGVGKTTLLKQR---------------AN----------LKKIQAD--- 130 (294)
Q Consensus 80 ~vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~~GiGKTtLa~~v---------------~~----------~~~i~~~--- 130 (294)
++||+.+++.|...+..- .....++.+.|.+|+|||+|++.| |+ ..+..++
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 689999999999998763 335679999999999999999999 00 1111111
Q ss_pred ----------------HHHHhCCC---------------CCCcc-----cCChH-----HHHHHHHHHh-ccCCeEEEEc
Q 048597 131 ----------------IGKKIGLS---------------TKSWQ-----ENSFE-----DKALDIAGIL-SRKRFVLLLD 168 (294)
Q Consensus 131 ----------------i~~~~~~~---------------~~~~~-----~~~~~-----~~~~~l~~~l-~~kr~LlvlD 168 (294)
+...++.. +.... ..... .....|..+. +.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 11122111 00000 00001 1122223333 4569999999
Q ss_pred cccC-c-cchhhhcCCcCCCCC----CcEEE--EecCCh--HHhhccCCce-eecCCCCHHHHHHHHHHHhCCCCCCCCC
Q 048597 169 DIWE-H-INLNKLGVPLQYLHL----GSKIV--FTTNSR--VVCGQMEATM-LNASPLRDEEAWRLFEEAVGRYVLDSHP 237 (294)
Q Consensus 169 dv~~-~-~~~~~l~~~l~~~~~----gs~ii--vTtr~~--~v~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~ 237 (294)
|++- . ..++-+......... -..+. .|.+.. .+...-.... +.|.||+..+...+......... .
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~----~ 237 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK----L 237 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc----c
Confidence 9943 2 222222111111110 01222 222222 1222222223 99999999999999998887633 2
Q ss_pred CHHHHHHHHHHhCCCChHHHHHHHHHHcC
Q 048597 238 DIPELAKTMAEECCCLPLALKTVGRAMRS 266 (294)
Q Consensus 238 ~~~~~~~~I~~~c~GlPlai~~i~~~L~~ 266 (294)
...+....|+++..|+||.+..+-..|..
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~ 266 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYE 266 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHh
Confidence 23356799999999999999998887766
No 24
>PLN03025 replication factor C subunit; Provisional
Probab=98.76 E-value=7e-08 Score=85.77 Aligned_cols=173 Identities=14% Similarity=0.101 Sum_probs=98.6
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHH-HHHhCCCCCCcccCChHHHHHHHHH
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADI-GKKIGLSTKSWQENSFEDKALDIAG 156 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i-~~~~~~~~~~~~~~~~~~~~~~l~~ 156 (294)
..++|.++.++.|..++..+ ..+.+.++|++|+||||+|+.+.....-. .+ ...+.+... .....+.....+..
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~eln~s--d~~~~~~vr~~i~~ 87 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGP-NYKEAVLELNAS--DDRGIDVVRNKIKM 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcc-cCccceeeeccc--ccccHHHHHHHHHH
Confidence 45789988888888877765 45567899999999999998874321000 00 000111111 11122223333322
Q ss_pred Hh-------ccCCeEEEEccccCc--cchhhhcCCcCCCCCCcEEEEecCChH-Hhhcc--CCceeecCCCCHHHHHHHH
Q 048597 157 IL-------SRKRFVLLLDDIWEH--INLNKLGVPLQYLHLGSKIVFTTNSRV-VCGQM--EATMLNASPLRDEEAWRLF 224 (294)
Q Consensus 157 ~l-------~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~--~~~~~~l~~L~~~~~~~Lf 224 (294)
+. .++.-+++||+++.. .....+...+......+++++++.... +.... .+..+++.++++++....+
T Consensus 88 ~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L 167 (319)
T PLN03025 88 FAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRL 167 (319)
T ss_pred HHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHH
Confidence 21 145679999999863 233333333322233466777665421 11111 1223999999999999998
Q ss_pred HHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHH
Q 048597 225 EEAVGRYVLDSHPDIPELAKTMAEECCCLPLALK 258 (294)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 258 (294)
...+.......+ .+....|++.|+|-.-.+.
T Consensus 168 ~~i~~~egi~i~---~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 168 MKVVEAEKVPYV---PEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 887754432222 3556888888888764443
No 25
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=3.2e-07 Score=87.04 Aligned_cols=178 Identities=15% Similarity=0.092 Sum_probs=106.1
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChh--------------HHHHHHHHHhCCCC---C
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLK--------------KIQADIGKKIGLST---K 140 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~--------------~i~~~i~~~~~~~~---~ 140 (294)
..++|.+.....|.+++..+. -...+.++|+.|+||||+|+.+.... ..-+.+...-.... .
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEID 93 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEID 93 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEec
Confidence 468999999999999998762 24688999999999999998872111 11111111000000 0
Q ss_pred CcccCChHHHHHHHHHH----hccCCeEEEEccccCc--cchhhhcCCcCCCCCCcEEEEecCChH-Hh-h-ccCCceee
Q 048597 141 SWQENSFEDKALDIAGI----LSRKRFVLLLDDIWEH--INLNKLGVPLQYLHLGSKIVFTTNSRV-VC-G-QMEATMLN 211 (294)
Q Consensus 141 ~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-v~-~-~~~~~~~~ 211 (294)
.......++..+.+... ..++.-++++|+++.. ...+.+...+.....+.++|++|.+.. +. . ...+..++
T Consensus 94 AAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~fe 173 (702)
T PRK14960 94 AASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFT 173 (702)
T ss_pred ccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheee
Confidence 00112233332222111 2356779999999863 455556555544444567777776532 21 1 12233399
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHH
Q 048597 212 ASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKT 259 (294)
Q Consensus 212 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 259 (294)
+.+++.++....+.+.+........ .+....|++.++|.+-.+..
T Consensus 174 FkpLs~eEI~k~L~~Il~kEgI~id---~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 174 LRPLAVDEITKHLGAILEKEQIAAD---QDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 9999999999988887754432222 24567899999997755443
No 26
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.73 E-value=1.3e-07 Score=91.90 Aligned_cols=171 Identities=20% Similarity=0.229 Sum_probs=94.5
Q ss_pred CceeehhHHHH---HHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHHHHHHH
Q 048597 78 RTVIRQELLLD---RVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFEDKALDI 154 (294)
Q Consensus 78 ~~~vGr~~~~~---~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l 154 (294)
..++|.+..+. .+...+..+ ....+.++|++|+||||||+.+.+.... .+ ..+........+.......+
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~~~~~--~f---~~lna~~~~i~dir~~i~~a 100 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIANHTRA--HF---SSLNAVLAGVKDLRAEVDRA 100 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHhcC--cc---eeehhhhhhhHHHHHHHHHH
Confidence 45789887764 455556555 5677899999999999999999643211 00 00100000011112222222
Q ss_pred HHHh--ccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEe--cCChH--Hhhc-c-CCceeecCCCCHHHHHHHH
Q 048597 155 AGIL--SRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFT--TNSRV--VCGQ-M-EATMLNASPLRDEEAWRLF 224 (294)
Q Consensus 155 ~~~l--~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivT--tr~~~--v~~~-~-~~~~~~l~~L~~~~~~~Lf 224 (294)
...+ .+++.+|+|||++. ...++.+...+ ..|+.++++ |.+.. +... . .+..+.+.+|+.++...++
T Consensus 101 ~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL 177 (725)
T PRK13341 101 KERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLL 177 (725)
T ss_pred HHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHH
Confidence 2222 24677999999975 34455554333 235555543 33321 1111 1 1223999999999999999
Q ss_pred HHHhCCCC----CCCCCCHHHHHHHHHHhCCCChHHHH
Q 048597 225 EEAVGRYV----LDSHPDIPELAKTMAEECCCLPLALK 258 (294)
Q Consensus 225 ~~~~~~~~----~~~~~~~~~~~~~I~~~c~GlPlai~ 258 (294)
.+.+.... .....--.+....|++.|.|..-.+.
T Consensus 178 ~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ll 215 (725)
T PRK13341 178 KRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLL 215 (725)
T ss_pred HHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHH
Confidence 87664100 00111123566888899988654333
No 27
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.73 E-value=1.3e-07 Score=83.94 Aligned_cols=175 Identities=13% Similarity=0.105 Sum_probs=100.0
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHHHHHHHHHH
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFEDKALDIAGI 157 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (294)
..++|++..++.+..++..+ ..+.+.++|++|+||||+++.+.+...-...-...+.+... ...........+.+.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~--~~~~~~~~~~~i~~~ 92 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNAS--DERGIDVIRNKIKEF 92 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccc--cccchHHHHHHHHHH
Confidence 45789999999999998765 45568999999999999998874321000000000001000 111112222233332
Q ss_pred hc------cCCeEEEEccccCc--cchhhhcCCcCCCCCCcEEEEecCChH-Hhhcc--CCceeecCCCCHHHHHHHHHH
Q 048597 158 LS------RKRFVLLLDDIWEH--INLNKLGVPLQYLHLGSKIVFTTNSRV-VCGQM--EATMLNASPLRDEEAWRLFEE 226 (294)
Q Consensus 158 l~------~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~--~~~~~~l~~L~~~~~~~Lf~~ 226 (294)
.. ..+-++++|++... .....+...+......+.+|+++.... +.... .+..+++.+++.++....+..
T Consensus 93 ~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~ 172 (319)
T PRK00440 93 ARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRY 172 (319)
T ss_pred HhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHH
Confidence 21 33568999998652 233344433333333466777664321 11111 112388999999999888888
Q ss_pred HhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHH
Q 048597 227 AVGRYVLDSHPDIPELAKTMAEECCCLPLALKT 259 (294)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 259 (294)
.+.......+ .+....+++.++|.+-.+..
T Consensus 173 ~~~~~~~~i~---~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 173 IAENEGIEIT---DDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred HHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 7754332222 35678889999998765443
No 28
>PRK09087 hypothetical protein; Validated
Probab=98.72 E-value=3.1e-07 Score=77.40 Aligned_cols=160 Identities=14% Similarity=0.083 Sum_probs=93.9
Q ss_pred ceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHHHHHHHHHHhccCCeEEEEccccCcc-chhhh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFEDKALDIAGILSRKRFVLLLDDIWEHI-NLNKL 179 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~-~~~~l 179 (294)
.+.+.|+|++|+|||+|++.+..... ...+ +.......+...+.. -+|++||+.... .-+.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i--------~~~~~~~~~~~~~~~--~~l~iDDi~~~~~~~~~l 106 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLI--------HPNEIGSDAANAAAE--GPVLIEDIDAGGFDETGL 106 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEe--------cHHHcchHHHHhhhc--CeEEEECCCCCCCCHHHH
Confidence 46799999999999999986643210 0011 111111112222222 378889996421 11122
Q ss_pred cCCcCC-CCCCcEEEEecCCh---------HHhhccCCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHH
Q 048597 180 GVPLQY-LHLGSKIVFTTNSR---------VVCGQMEATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAE 248 (294)
Q Consensus 180 ~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~ 248 (294)
...+.. ...|..+|+|++.. +....+.... ++++++++++-.+++++.+.......+ +++..-|++
T Consensus 107 f~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~---~ev~~~La~ 183 (226)
T PRK09087 107 FHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVD---PHVVYYLVS 183 (226)
T ss_pred HHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Confidence 222211 12356788888742 2334444445 999999999999999998855432232 367788999
Q ss_pred hCCCChHHHHHHHHHH-------cCCCCHHHHHHHHHHH
Q 048597 249 ECCCLPLALKTVGRAM-------RSISSIEEWEHAIKII 280 (294)
Q Consensus 249 ~c~GlPlai~~i~~~L-------~~~~~~~~w~~~l~~l 280 (294)
.+.|..-++..+-..| ..+-+..-.+.+++.+
T Consensus 184 ~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 184 RMERSLFAAQTIVDRLDRLALERKSRITRALAAEVLNEM 222 (226)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhh
Confidence 8888877766433222 2225667777776654
No 29
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.72 E-value=2.2e-07 Score=76.86 Aligned_cols=177 Identities=18% Similarity=0.168 Sum_probs=96.5
Q ss_pred CceeehhHHHHHHHHHHhc---CCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHHHHHHH
Q 048597 78 RTVIRQELLLDRVWRFVTD---QERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFEDKALDI 154 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l 154 (294)
.+|||.++.++.+.-++.. .......+.+|||+|+||||||+.+.+..... +..... .......+++..+
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~------~~~~sg-~~i~k~~dl~~il 96 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN------FKITSG-PAIEKAGDLAAIL 96 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--------EEEEEC-CC--SCHHHHHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC------eEeccc-hhhhhHHHHHHHH
Confidence 5689999888877655543 23467889999999999999998874433221 111001 0112233444433
Q ss_pred HHHhccCCeEEEEccccCc--cchhhhcCCcC--------CCC-----------CCcEEEEecCChHHhhccCCce---e
Q 048597 155 AGILSRKRFVLLLDDIWEH--INLNKLGVPLQ--------YLH-----------LGSKIVFTTNSRVVCGQMEATM---L 210 (294)
Q Consensus 155 ~~~l~~kr~LlvlDdv~~~--~~~~~l~~~l~--------~~~-----------~gs~iivTtr~~~v~~~~~~~~---~ 210 (294)
.+ + +++-+|++|+++.- ..-+.+..+.. ... +=+-|=.|||...+.......- .
T Consensus 97 ~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~ 174 (233)
T PF05496_consen 97 TN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVL 174 (233)
T ss_dssp HT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEE
T ss_pred Hh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceec
Confidence 33 3 35668889999862 11111111110 011 1123447888766644444332 5
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHHHHHcC
Q 048597 211 NASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVGRAMRS 266 (294)
Q Consensus 211 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~~L~~ 266 (294)
+++..+.++-..++.+.+..-+.. --.+.+.+|++.|.|-|--+.-+-..++.
T Consensus 175 ~l~~Y~~~el~~Iv~r~a~~l~i~---i~~~~~~~Ia~rsrGtPRiAnrll~rvrD 227 (233)
T PF05496_consen 175 RLEFYSEEELAKIVKRSARILNIE---IDEDAAEEIARRSRGTPRIANRLLRRVRD 227 (233)
T ss_dssp E----THHHHHHHHHHCCHCTT-E---E-HHHHHHHHHCTTTSHHHHHHHHHHHCC
T ss_pred chhcCCHHHHHHHHHHHHHHhCCC---cCHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 799999999999999877543322 22467899999999999877766665543
No 30
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.71 E-value=2.6e-07 Score=86.36 Aligned_cols=178 Identities=19% Similarity=0.137 Sum_probs=106.6
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhH------------------HHHHHHHHhCCCC
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKK------------------IQADIGKKIGLST 139 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~------------------i~~~i~~~~~~~~ 139 (294)
..++|.+..+..|...+..+. -...+.++|+.|+||||+|+.+..... .-..|........
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv 99 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDI 99 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcE
Confidence 457999999998888777651 346889999999999999998832110 0011111000000
Q ss_pred ---CCcccCChHHHHHHHHHH----hccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEE-ecCChHHhhcc--CC
Q 048597 140 ---KSWQENSFEDKALDIAGI----LSRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVF-TTNSRVVCGQM--EA 207 (294)
Q Consensus 140 ---~~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~v~~~~--~~ 207 (294)
........+++...+... +.+++.++|+|+++. ...++.+...+......+.+|+ ||+...+.... .+
T Consensus 100 ~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc 179 (507)
T PRK06645 100 IEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRC 179 (507)
T ss_pred EEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcc
Confidence 000112233333322221 235677999999986 4557777666654444555554 44444443322 22
Q ss_pred ceeecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHH
Q 048597 208 TMLNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKT 259 (294)
Q Consensus 208 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 259 (294)
..+++.+++.++....+.+.+........ .+....|++.++|.+--+..
T Consensus 180 ~~~ef~~ls~~el~~~L~~i~~~egi~ie---~eAL~~Ia~~s~GslR~al~ 228 (507)
T PRK06645 180 QRYDLRRLSFEEIFKLLEYITKQENLKTD---IEALRIIAYKSEGSARDAVS 228 (507)
T ss_pred eEEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 33999999999999999988855432222 24557799999997754433
No 31
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.69 E-value=4.1e-07 Score=87.48 Aligned_cols=180 Identities=15% Similarity=0.061 Sum_probs=107.4
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHHH-----------------------HHH---
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKIQ-----------------------ADI--- 131 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~-----------------------~~i--- 131 (294)
+.++|++..+..+...+... ....+.|+|++|+||||||+.+++..... ..+
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ 231 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNP 231 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHH
Confidence 46899999999888877654 45679999999999999999874322100 000
Q ss_pred ----------------HHHhCCCC----------------CCcccCChHHHHHHHHHHhccCCeEEEEccccCc--cchh
Q 048597 132 ----------------GKKIGLST----------------KSWQENSFEDKALDIAGILSRKRFVLLLDDIWEH--INLN 177 (294)
Q Consensus 132 ----------------~~~~~~~~----------------~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~--~~~~ 177 (294)
+...+... +.... -....+..+.+.+..++++++-|+.|.. ..|.
T Consensus 232 llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~-Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~ 310 (615)
T TIGR02903 232 LLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGE-LDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPK 310 (615)
T ss_pred hcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEecccc-CCHHHHHHHHHHHhhCeEEeecceeccCCcccch
Confidence 00001000 00000 1123456677777788888876666542 4566
Q ss_pred hhcCCcCCCCCCcEEEE--ecCChHH-hhcc--CCceeecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCC
Q 048597 178 KLGVPLQYLHLGSKIVF--TTNSRVV-CGQM--EATMLNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCC 252 (294)
Q Consensus 178 ~l~~~l~~~~~gs~iiv--Ttr~~~v-~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G 252 (294)
.+...+........+++ ||++... .... .+..+.+.+++.++.+.++.+.+.......+ .++...|.+.+..
T Consensus 311 ~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls---~eal~~L~~ys~~ 387 (615)
T TIGR02903 311 YIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLA---AGVEELIARYTIE 387 (615)
T ss_pred hhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHCCCc
Confidence 66666555544444444 4553321 1111 1223889999999999999987754321121 3555677777766
Q ss_pred ChHHHHHHHHH
Q 048597 253 LPLALKTVGRA 263 (294)
Q Consensus 253 lPlai~~i~~~ 263 (294)
-+-++..++.+
T Consensus 388 gRraln~L~~~ 398 (615)
T TIGR02903 388 GRKAVNILADV 398 (615)
T ss_pred HHHHHHHHHHH
Confidence 67777766544
No 32
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=1.4e-06 Score=78.14 Aligned_cols=178 Identities=10% Similarity=0.070 Sum_probs=105.0
Q ss_pred cCceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHh-----hCh---------------hHHHHHHHHHhC
Q 048597 77 ERTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR-----ANL---------------KKIQADIGKKIG 136 (294)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v-----~~~---------------~~i~~~i~~~~~ 136 (294)
-..++|.+.....+...+..+. -...+.|+|+.|+||||+|..+ +.. ......+...-.
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~h 100 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAH 100 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCC
Confidence 4568999999999999988762 3457999999999999999887 210 011111111100
Q ss_pred -----C--CCCCc-----ccCChHHHHHHHHHHh-----ccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEec-
Q 048597 137 -----L--STKSW-----QENSFEDKALDIAGIL-----SRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTT- 196 (294)
Q Consensus 137 -----~--~~~~~-----~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTt- 196 (294)
+ +.... .....++. ..+.+++ .+++.++|+|+++. ....+.+...+........+|+.|
T Consensus 101 Pdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~ 179 (351)
T PRK09112 101 PNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISH 179 (351)
T ss_pred CCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEEC
Confidence 0 00000 11123332 3444444 35677999999976 334444544443332334444444
Q ss_pred CChHHhhcc--CCceeecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHH
Q 048597 197 NSRVVCGQM--EATMLNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVG 261 (294)
Q Consensus 197 r~~~v~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~ 261 (294)
+...+.... .+..+++.+++.++...++.+..... . --.+....+++.++|.|..+..+.
T Consensus 180 ~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~----~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 180 SSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ----G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc----C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 433332111 22349999999999999998743211 1 113456789999999998776554
No 33
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.67 E-value=4.1e-07 Score=77.27 Aligned_cols=173 Identities=12% Similarity=0.048 Sum_probs=94.7
Q ss_pred cCceeehhH-HHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHHHHHHHH
Q 048597 77 ERTVIRQEL-LLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFEDKALDIA 155 (294)
Q Consensus 77 ~~~~vGr~~-~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~ 155 (294)
++.++|... .+..+..+.... ....+.|+|+.|+|||+|++.+.+...-.. ......+... .......+.
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~~--~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~--~~v~y~~~~~-----~~~~~~~~~ 92 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQE--HSGYIYLWSREGAGRSHLLHAACAELSQRG--RAVGYVPLDK-----RAWFVPEVL 92 (235)
T ss_pred cccccCccHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEEHHH-----HhhhhHHHH
Confidence 444556332 344444443333 446899999999999999998765322000 0000000000 000111222
Q ss_pred HHhccCCeEEEEccccCc---cchhhh-cCCcCC-CCCC-cEEEEecCCh---------HHhhccCCce-eecCCCCHHH
Q 048597 156 GILSRKRFVLLLDDIWEH---INLNKL-GVPLQY-LHLG-SKIVFTTNSR---------VVCGQMEATM-LNASPLRDEE 219 (294)
Q Consensus 156 ~~l~~kr~LlvlDdv~~~---~~~~~l-~~~l~~-~~~g-s~iivTtr~~---------~v~~~~~~~~-~~l~~L~~~~ 219 (294)
+.+.. --++++||+... ..|+.. ...+.. ...| .++|+||+.. +....+.... ++++++++++
T Consensus 93 ~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~ 171 (235)
T PRK08084 93 EGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEE 171 (235)
T ss_pred HHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHH
Confidence 22221 248899999752 344432 122211 1123 3788888754 2344455555 9999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHHH
Q 048597 220 AWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVGR 262 (294)
Q Consensus 220 ~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~ 262 (294)
-.+++.+++.......+ .++..-|++.|.|..-.+..+-.
T Consensus 172 ~~~~l~~~a~~~~~~l~---~~v~~~L~~~~~~d~r~l~~~l~ 211 (235)
T PRK08084 172 KLQALQLRARLRGFELP---EDVGRFLLKRLDREMRTLFMTLD 211 (235)
T ss_pred HHHHHHHHHHHcCCCCC---HHHHHHHHHhhcCCHHHHHHHHH
Confidence 99999886644332222 46778899998876655554443
No 34
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=6.8e-07 Score=81.26 Aligned_cols=174 Identities=10% Similarity=0.031 Sum_probs=102.6
Q ss_pred CceeehhHHHHHHHHHHhcCCC--------CceEEEEEcCCCChHHHHHHHhh-----Chh--------HHHHHHHHHhC
Q 048597 78 RTVIRQELLLDRVWRFVTDQER--------NRGIIGLYGTGGVGKTTLLKQRA-----NLK--------KIQADIGKKIG 136 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vi~I~G~~GiGKTtLa~~v~-----~~~--------~i~~~i~~~~~ 136 (294)
+.++|.+..++.|.+++..+.. -...+.++||.|+||||+|..+. ... ..-..+.....
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 3578999999999999987521 24678999999999999998872 110 11111111110
Q ss_pred C----CCCCcccCChHHHHHHHHHHh-----ccCCeEEEEccccCc--cchhhhcCCcCCCCCCcEEEEecCCh-HHhhc
Q 048597 137 L----STKSWQENSFEDKALDIAGIL-----SRKRFVLLLDDIWEH--INLNKLGVPLQYLHLGSKIVFTTNSR-VVCGQ 204 (294)
Q Consensus 137 ~----~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~ 204 (294)
. ..........++.. .+.+.+ .+++-++++|++... ...+.+...+.....+..+|++|.+. .+...
T Consensus 85 pD~~~i~~~~~~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpT 163 (394)
T PRK07940 85 PDVRVVAPEGLSIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPT 163 (394)
T ss_pred CCEEEeccccccCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHH
Confidence 0 00000112233322 333333 345568999999763 34444544554444456666666553 33222
Q ss_pred c--CCceeecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHH
Q 048597 205 M--EATMLNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTV 260 (294)
Q Consensus 205 ~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i 260 (294)
+ .+..+.+.+++.++..+.+.+.... + .+.+..+++.++|.|..+..+
T Consensus 164 IrSRc~~i~f~~~~~~~i~~~L~~~~~~-----~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 164 IRSRCRHVALRTPSVEAVAEVLVRRDGV-----D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred HHhhCeEEECCCCCHHHHHHHHHHhcCC-----C---HHHHHHHHHHcCCCHHHHHHH
Confidence 1 2334999999999998888753321 1 245678999999999755443
No 35
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=4.3e-07 Score=85.10 Aligned_cols=176 Identities=17% Similarity=0.101 Sum_probs=104.8
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHHH-------------HHHHHHhCCCC---CC
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKIQ-------------ADIGKKIGLST---KS 141 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~-------------~~i~~~~~~~~---~~ 141 (294)
..++|.+..++.|..++..+. -...+.++|++|+||||+|+.+.....-. ..+........ ..
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~ 92 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDA 92 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecc
Confidence 457999999999998888762 33567999999999999999883321100 00000000000 00
Q ss_pred cccCChHHHHHHHHHHh-----ccCCeEEEEccccCc--cchhhhcCCcCCCCCCcEEEEecCC-hHHhhcc--CCceee
Q 048597 142 WQENSFEDKALDIAGIL-----SRKRFVLLLDDIWEH--INLNKLGVPLQYLHLGSKIVFTTNS-RVVCGQM--EATMLN 211 (294)
Q Consensus 142 ~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~--~~~~~~ 211 (294)
......+.. ..+.+.+ .+++-++|+|+++.. ..++.+...+......+.+|++|.. ..+...+ .+..++
T Consensus 93 ~~~~~vd~i-R~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~ 171 (504)
T PRK14963 93 ASNNSVEDV-RDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFR 171 (504)
T ss_pred cccCCHHHH-HHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEE
Confidence 011222222 2233332 356679999999753 4566666555444344555555543 3332222 223399
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHH
Q 048597 212 ASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALK 258 (294)
Q Consensus 212 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 258 (294)
+.+++.++....+.+.+...+...+ .+....|++.++|.+--+.
T Consensus 172 f~~ls~~el~~~L~~i~~~egi~i~---~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 172 FRRLTEEEIAGKLRRLLEAEGREAE---PEALQLVARLADGAMRDAE 215 (504)
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 9999999999999987754432222 3556889999999886553
No 36
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.65 E-value=5.9e-07 Score=85.92 Aligned_cols=178 Identities=16% Similarity=0.094 Sum_probs=104.7
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChh--------------HHHHHHHHHhCCC---CC
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLK--------------KIQADIGKKIGLS---TK 140 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~--------------~i~~~i~~~~~~~---~~ 140 (294)
..+||.+..+..|.+.+..+. -...+.++|+.|+||||+|+.+.... ..-..|...-... ..
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieid 94 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEID 94 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeec
Confidence 468999999999999888762 23457899999999999999882211 1111111100000 00
Q ss_pred CcccCChHHHHHHHHHH-----hccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEecCC-hHHhhc--cCCcee
Q 048597 141 SWQENSFEDKALDIAGI-----LSRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTTNS-RVVCGQ--MEATML 210 (294)
Q Consensus 141 ~~~~~~~~~~~~~l~~~-----l~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~--~~~~~~ 210 (294)
.......++.. .+.+. ..+++-++|||+++. ....+.+...+.......++|++|.+ ..+... ..+..|
T Consensus 95 aas~~~VddiR-~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~ 173 (647)
T PRK07994 95 AASRTKVEDTR-ELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 173 (647)
T ss_pred ccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEe
Confidence 00011223222 22222 246677999999976 34566665555443334555555544 333211 123449
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHH
Q 048597 211 NASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTV 260 (294)
Q Consensus 211 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i 260 (294)
++.+|+.++....+.+.+....... -......|++.++|.+-.+..+
T Consensus 174 ~f~~Ls~~ei~~~L~~il~~e~i~~---e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 174 HLKALDVEQIRQQLEHILQAEQIPF---EPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999998887764332111 1245578999999988644443
No 37
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.65 E-value=8.1e-07 Score=80.45 Aligned_cols=165 Identities=16% Similarity=0.100 Sum_probs=94.5
Q ss_pred CceeehhHHHHHHHHHHhcC-----------CCCceEEEEEcCCCChHHHHHHHhhChhH-----HH-HHHHHHhCCCCC
Q 048597 78 RTVIRQELLLDRVWRFVTDQ-----------ERNRGIIGLYGTGGVGKTTLLKQRANLKK-----IQ-ADIGKKIGLSTK 140 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-----i~-~~i~~~~~~~~~ 140 (294)
..+.|++..++++.+.+... -...+-+.++|++|+|||+||+.+.+... +. ..+....
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~----- 196 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKY----- 196 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHh-----
Confidence 45789999999998887532 02356699999999999999999844221 10 0010000
Q ss_pred CcccCChHHHHHHHHHHh-ccCCeEEEEccccCcc----------------chhhhcCCcC--CCCCCcEEEEecCChHH
Q 048597 141 SWQENSFEDKALDIAGIL-SRKRFVLLLDDIWEHI----------------NLNKLGVPLQ--YLHLGSKIVFTTNSRVV 201 (294)
Q Consensus 141 ~~~~~~~~~~~~~l~~~l-~~kr~LlvlDdv~~~~----------------~~~~l~~~l~--~~~~gs~iivTtr~~~v 201 (294)
.. ........+.+.. ...+.+|+|||++... .+..+...+. ....+..||.||.....
T Consensus 197 --~g-~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ 273 (364)
T TIGR01242 197 --IG-EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDI 273 (364)
T ss_pred --hh-HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 00 0111222222222 3456899999987521 1112211111 11235678888875432
Q ss_pred -----hhccCCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCCh
Q 048597 202 -----CGQMEATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLP 254 (294)
Q Consensus 202 -----~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 254 (294)
........ +++...+.++..++|..++.........+ ...+++.+.|..
T Consensus 274 ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 274 LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 21122334 89999999999999998775433222222 366778887765
No 38
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.65 E-value=7.9e-07 Score=82.69 Aligned_cols=182 Identities=15% Similarity=0.134 Sum_probs=102.8
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhH--------------HHHHHHHHhCCCC---C
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKK--------------IQADIGKKIGLST---K 140 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~--------------i~~~i~~~~~~~~---~ 140 (294)
..++|.+.....|...+..+. -.+.+.++||+|+||||+|+.+..... ....+...-.... .
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~ 92 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELD 92 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEe
Confidence 468999988888888777651 235689999999999999998832211 0111110000000 0
Q ss_pred CcccCChHHHHHHHHHHh-----ccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEecCC-hHHhhcc--CCcee
Q 048597 141 SWQENSFEDKALDIAGIL-----SRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTTNS-RVVCGQM--EATML 210 (294)
Q Consensus 141 ~~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~--~~~~~ 210 (294)
.......+.. ..+.+.. .+++-++++|+++. ....+.+...+........+|++|.+ ..+.... .+..+
T Consensus 93 aa~~~gid~i-R~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv 171 (472)
T PRK14962 93 AASNRGIDEI-RKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVI 171 (472)
T ss_pred CcccCCHHHH-HHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEE
Confidence 0011222222 2333332 34567999999975 33445554444333333444444443 3332222 12239
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCC-ChHHHHHHHHHH
Q 048597 211 NASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCC-LPLALKTVGRAM 264 (294)
Q Consensus 211 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G-lPlai~~i~~~L 264 (294)
++.+++.++....+.+.+......-+ .+....|++.++| ++.++..+-.+.
T Consensus 172 ~f~~l~~~el~~~L~~i~~~egi~i~---~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 172 EFRNISDELIIKRLQEVAEAEGIEID---REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EECCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999998888887744332222 3556788887765 567777766543
No 39
>PRK04195 replication factor C large subunit; Provisional
Probab=98.64 E-value=6.1e-07 Score=84.18 Aligned_cols=175 Identities=17% Similarity=0.152 Sum_probs=101.7
Q ss_pred CceeehhHHHHHHHHHHhcCC--CCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHHHHHHHH
Q 048597 78 RTVIRQELLLDRVWRFVTDQE--RNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFEDKALDIA 155 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~ 155 (294)
..++|.+..++.+..|+..-. ...+.+.|+|++|+||||+|+.+.+.... ..+.+... ...........+.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~-----~~ielnas--d~r~~~~i~~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGW-----EVIELNAS--DQRTADVIERVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCC-----CEEEEccc--ccccHHHHHHHHH
Confidence 458999999999999987531 23689999999999999999888442210 00000000 0111111111111
Q ss_pred HH-----hc-cCCeEEEEccccCcc------chhhhcCCcCCCCCCcEEEEecCChH-Hh--hcc-CCceeecCCCCHHH
Q 048597 156 GI-----LS-RKRFVLLLDDIWEHI------NLNKLGVPLQYLHLGSKIVFTTNSRV-VC--GQM-EATMLNASPLRDEE 219 (294)
Q Consensus 156 ~~-----l~-~kr~LlvlDdv~~~~------~~~~l~~~l~~~~~gs~iivTtr~~~-v~--~~~-~~~~~~l~~L~~~~ 219 (294)
.. +. .++.+||||+++... .+..+...+.. .+..+|+++.+.. .. ..- .+..+++.+++.++
T Consensus 87 ~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~ 164 (482)
T PRK04195 87 EAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRS 164 (482)
T ss_pred HhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhccceEEEecCCCHHH
Confidence 11 12 267899999997632 23444333332 2345666664322 11 111 12238999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHHHHH
Q 048597 220 AWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVGRAM 264 (294)
Q Consensus 220 ~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~~L 264 (294)
....+.+.+.......+ .+....|++.|+|-.-.+......+
T Consensus 165 i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 165 IVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred HHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 98888877754432232 3567889999998776655443333
No 40
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=5.6e-07 Score=79.78 Aligned_cols=172 Identities=15% Similarity=0.103 Sum_probs=104.1
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChh---HHHHHHHHHhCCCCCCcccCChHHHHHHH
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLK---KIQADIGKKIGLSTKSWQENSFEDKALDI 154 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~---~i~~~i~~~~~~~~~~~~~~~~~~~~~~l 154 (294)
..++|.+..++.+..++..+. -.+.+.++|+.|+||||+|+.+.... .....-.....+..........++..+ +
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~-~ 81 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRN-I 81 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHH-H
Confidence 357899999999999987652 34678999999999999998873210 000000000000000001223333332 2
Q ss_pred HHHh-----ccCCeEEEEcccc--CccchhhhcCCcCCCCCCcEEEEecCChHHh-h--ccCCceeecCCCCHHHHHHHH
Q 048597 155 AGIL-----SRKRFVLLLDDIW--EHINLNKLGVPLQYLHLGSKIVFTTNSRVVC-G--QMEATMLNASPLRDEEAWRLF 224 (294)
Q Consensus 155 ~~~l-----~~kr~LlvlDdv~--~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~--~~~~~~~~l~~L~~~~~~~Lf 224 (294)
.+.+ .+++-++|+|+++ +...++.+...+.....++.+|++|.+.+.. . ...+..+++.++++++....+
T Consensus 82 ~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l 161 (313)
T PRK05564 82 IEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFI 161 (313)
T ss_pred HHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHH
Confidence 2322 3455577777764 4567888888887766788888888665421 1 112334999999999998877
Q ss_pred HHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHH
Q 048597 225 EEAVGRYVLDSHPDIPELAKTMAEECCCLPLALK 258 (294)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 258 (294)
.+..... + .+.+..++..|+|.|.-+.
T Consensus 162 ~~~~~~~----~---~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 162 SYKYNDI----K---EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred HHHhcCC----C---HHHHHHHHHHcCCCHHHHH
Confidence 6654311 1 2335778889999886554
No 41
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.62 E-value=6.1e-07 Score=85.79 Aligned_cols=180 Identities=12% Similarity=0.075 Sum_probs=104.4
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChh--------------HHHHHHHHHhCCC---CC
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLK--------------KIQADIGKKIGLS---TK 140 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~--------------~i~~~i~~~~~~~---~~ 140 (294)
..++|.+..+..|.+++..+. -...+.++|+.|+||||+|+.+.... ..-..+...-... ..
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEid 94 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEID 94 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEe
Confidence 468999999999999988761 24578999999999999998872210 0111111100000 00
Q ss_pred CcccCChHHHHHHHHHH----hccCCeEEEEccccCc--cchhhhcCCcCCCCCCcEEEEecCChH-Hh-hc-cCCceee
Q 048597 141 SWQENSFEDKALDIAGI----LSRKRFVLLLDDIWEH--INLNKLGVPLQYLHLGSKIVFTTNSRV-VC-GQ-MEATMLN 211 (294)
Q Consensus 141 ~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-v~-~~-~~~~~~~ 211 (294)
.......+.+...+... ..+++-++|||++... .....+...+......+++|++|.+.. +. .. ..+..++
T Consensus 95 aAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~ 174 (709)
T PRK08691 95 AASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFV 174 (709)
T ss_pred ccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhh
Confidence 00112233222222211 2356679999999763 234445444433333456666664432 21 11 1122388
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHH
Q 048597 212 ASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVG 261 (294)
Q Consensus 212 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~ 261 (294)
+.+++.++....+.+.+........ .+....|++.++|.+.-+..+-
T Consensus 175 f~~Ls~eeI~~~L~~Il~kEgi~id---~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 175 LRNMTAQQVADHLAHVLDSEKIAYE---PPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999887755442222 2456889999999885555443
No 42
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.62 E-value=2e-06 Score=83.51 Aligned_cols=188 Identities=18% Similarity=0.152 Sum_probs=103.4
Q ss_pred cCceeehhHHHHHHHHHHhc---CCCCceEEEEEcCCCChHHHHHHHhhCh--------------------------hHH
Q 048597 77 ERTVIRQELLLDRVWRFVTD---QERNRGIIGLYGTGGVGKTTLLKQRANL--------------------------KKI 127 (294)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~--------------------------~~i 127 (294)
+..+.||++++++|...|.. +.....++.|+|++|+|||++++.|... ..+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 45688999999999999875 2233457889999999999999998321 123
Q ss_pred HHHHHHHhCCCCCCcccCChHHHHHHHHHHhc---cCCeEEEEccccCcc--chhhhcCCcC-CCCCCcEEEE--ecCC-
Q 048597 128 QADIGKKIGLSTKSWQENSFEDKALDIAGILS---RKRFVLLLDDIWEHI--NLNKLGVPLQ-YLHLGSKIVF--TTNS- 198 (294)
Q Consensus 128 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~kr~LlvlDdv~~~~--~~~~l~~~l~-~~~~gs~iiv--Ttr~- 198 (294)
...|..++..... ............+...+. ....+||||+++... .-+.|...|. ....+++|++ .+..
T Consensus 834 YqvI~qqL~g~~P-~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 834 YQVLYKQLFNKKP-PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHcCCCC-CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 3334444421111 111222334444544442 223589999997521 1111111110 1123455543 3322
Q ss_pred -------hHHhhccCCceeecCCCCHHHHHHHHHHHhCCC-CCCCCCCHHHHHHHHHHhCCCChHHHHHHHHHHc
Q 048597 199 -------RVVCGQMEATMLNASPLRDEEAWRLFEEAVGRY-VLDSHPDIPELAKTMAEECCCLPLALKTVGRAMR 265 (294)
Q Consensus 199 -------~~v~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~~L~ 265 (294)
..+...++...+...|++.++..+++..++... ..-.+.-+.-+++.++...|-.-.|+.++-....
T Consensus 913 DLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 913 DLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred hcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 122233333337789999999999999988532 1112222334445455445556667666655543
No 43
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.62 E-value=9.8e-07 Score=74.52 Aligned_cols=173 Identities=13% Similarity=0.068 Sum_probs=92.0
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHHHHHHHHHH
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFEDKALDIAGI 157 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (294)
+.+.|........+..+.........+.|+|+.|+|||+||+.+.+...- -+... ...+.......+ ..
T Consensus 19 ~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~-------~~~~~---~~i~~~~~~~~~-~~ 87 (227)
T PRK08903 19 NFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASY-------GGRNA---RYLDAASPLLAF-DF 87 (227)
T ss_pred ccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHh-------CCCcE---EEEehHHhHHHH-hh
Confidence 33345544433333333222224568899999999999999988653210 01000 001111111111 12
Q ss_pred hccCCeEEEEccccCccch--hhhcCCcCC-CCCCc-EEEEecCChHHhh--------ccCCce-eecCCCCHHHHHHHH
Q 048597 158 LSRKRFVLLLDDIWEHINL--NKLGVPLQY-LHLGS-KIVFTTNSRVVCG--------QMEATM-LNASPLRDEEAWRLF 224 (294)
Q Consensus 158 l~~kr~LlvlDdv~~~~~~--~~l~~~l~~-~~~gs-~iivTtr~~~v~~--------~~~~~~-~~l~~L~~~~~~~Lf 224 (294)
. ...-++++||+.....+ ..+...+.. ...+. .+++|++...... .+.... +++.++++++-..++
T Consensus 88 ~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l 166 (227)
T PRK08903 88 D-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAAL 166 (227)
T ss_pred c-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHH
Confidence 2 23457899999753222 223222221 12233 3666666433211 222223 999999998877777
Q ss_pred HHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHHHHHc
Q 048597 225 EEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVGRAMR 265 (294)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~~L~ 265 (294)
.+.+.......+ .+....+++.+.|.+..+..+...|.
T Consensus 167 ~~~~~~~~v~l~---~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 167 KAAAAERGLQLA---DEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 665433222222 35678888899999998877766553
No 44
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=2.2e-06 Score=77.25 Aligned_cols=176 Identities=13% Similarity=0.071 Sum_probs=106.0
Q ss_pred cCceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHh-----hChh-------------------HHHHHHH
Q 048597 77 ERTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR-----ANLK-------------------KIQADIG 132 (294)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v-----~~~~-------------------~i~~~i~ 132 (294)
-..++|.+.....|.+.+..+. -...+.++|+.|+||+|+|..+ +... ..-+.|.
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~ 96 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIA 96 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHH
Confidence 3578999999999999888761 3446999999999999999877 1110 0111111
Q ss_pred HHhC-----CCC--CCc-----ccCChHHHHHHHHHHh-----ccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEE
Q 048597 133 KKIG-----LST--KSW-----QENSFEDKALDIAGIL-----SRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIV 193 (294)
Q Consensus 133 ~~~~-----~~~--~~~-----~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~ii 193 (294)
..-. +.. ... .....++ ...+.+++ .+++.++++|+++. ......+...+.....++.+|
T Consensus 97 ~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~I 175 (365)
T PRK07471 97 AGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFL 175 (365)
T ss_pred ccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 0000 000 000 1112233 33444444 25667999999976 344555555554444456677
Q ss_pred EecCChH-Hhh--ccCCceeecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHH
Q 048597 194 FTTNSRV-VCG--QMEATMLNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVG 261 (294)
Q Consensus 194 vTtr~~~-v~~--~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~ 261 (294)
++|.+.. +.. ...+..+.+.+++.++..+++.+..... + ......+++.++|.|+.+..+.
T Consensus 176 L~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~-----~--~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 176 LVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL-----P--DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC-----C--HHHHHHHHHHcCCCHHHHHHHh
Confidence 7776553 321 2223349999999999999998764221 1 1122678999999998665543
No 45
>PTZ00202 tuzin; Provisional
Probab=98.61 E-value=6.3e-07 Score=80.91 Aligned_cols=148 Identities=16% Similarity=0.142 Sum_probs=93.4
Q ss_pred CCcCceeehhHHHHHHHHHHhcCC-CCceEEEEEcCCCChHHHHHHHh-------------hChhHHHHHHHHHhCCCCC
Q 048597 75 PVERTVIRQELLLDRVWRFVTDQE-RNRGIIGLYGTGGVGKTTLLKQR-------------ANLKKIQADIGKKIGLSTK 140 (294)
Q Consensus 75 ~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vi~I~G~~GiGKTtLa~~v-------------~~~~~i~~~i~~~~~~~~~ 140 (294)
+..+.|+||+.+...+...|...+ ...+++.|+|++|+|||||++.+ .+..+++..|+..++++..
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg~eElLr~LL~ALGV~p~ 338 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRGTEDTLRSVVKALGVPNV 338 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCCHHHHHHHHHHHcCCCCc
Confidence 445789999999999999997532 24569999999999999998887 3456788999999987432
Q ss_pred CcccCChHHHHHHHHHHh-----c-cCCeEEEEccccCccchhhh---cCCcCCCCCCcEEEEecCChHHhhccCCce--
Q 048597 141 SWQENSFEDKALDIAGIL-----S-RKRFVLLLDDIWEHINLNKL---GVPLQYLHLGSKIVFTTNSRVVCGQMEATM-- 209 (294)
Q Consensus 141 ~~~~~~~~~~~~~l~~~l-----~-~kr~LlvlDdv~~~~~~~~l---~~~l~~~~~gs~iivTtr~~~v~~~~~~~~-- 209 (294)
....++...|.+.+ . +++.+||+- +.+..++..+ ...|.....-|.|++---.+...-....-+
T Consensus 339 ----~~k~dLLrqIqeaLl~~~~e~GrtPVLII~-lreg~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~~lprl 413 (550)
T PTZ00202 339 ----EACGDLLDFISEACRRAKKMNGETPLLVLK-LREGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANTLLPRL 413 (550)
T ss_pred ----ccHHHHHHHHHHHHHHHHHhCCCCEEEEEE-ecCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchhcccCccc
Confidence 22234444444443 2 566666653 2222222221 112233344567776655444322211111
Q ss_pred --eecCCCCHHHHHHHHHHH
Q 048597 210 --LNASPLRDEEAWRLFEEA 227 (294)
Q Consensus 210 --~~l~~L~~~~~~~Lf~~~ 227 (294)
|-+.+++.++|...-.+.
T Consensus 414 df~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 414 DFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred eeEecCCCCHHHHHHHHhhc
Confidence 888999999988776554
No 46
>PRK08727 hypothetical protein; Validated
Probab=98.61 E-value=1.2e-06 Score=74.35 Aligned_cols=165 Identities=15% Similarity=0.085 Sum_probs=91.5
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHHHHHHHHHH
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFEDKALDIAGI 157 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (294)
+.++|-......+.....+. ....+.|+|++|+|||+|++.+.+... +.-.....+ +..+....+.+.
T Consensus 20 ~f~~~~~n~~~~~~~~~~~~--~~~~l~l~G~~G~GKThL~~a~~~~~~--~~~~~~~y~--------~~~~~~~~~~~~ 87 (233)
T PRK08727 20 SYIAAPDGLLAQLQALAAGQ--SSDWLYLSGPAGTGKTHLALALCAAAE--QAGRSSAYL--------PLQAAAGRLRDA 87 (233)
T ss_pred hccCCcHHHHHHHHHHHhcc--CCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEE--------eHHHhhhhHHHH
Confidence 33444444444443333322 345699999999999999998865321 110000111 111122222222
Q ss_pred hc--cCCeEEEEccccCc---cchhh-hcCCcCC-CCCCcEEEEecCChH---------HhhccCCce-eecCCCCHHHH
Q 048597 158 LS--RKRFVLLLDDIWEH---INLNK-LGVPLQY-LHLGSKIVFTTNSRV---------VCGQMEATM-LNASPLRDEEA 220 (294)
Q Consensus 158 l~--~kr~LlvlDdv~~~---~~~~~-l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~~-~~l~~L~~~~~ 220 (294)
+. .+.-+|||||+... ..|.. +...+.. ...|..+|+|++... ....+.... +++.+++.++.
T Consensus 88 ~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~ 167 (233)
T PRK08727 88 LEALEGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVAR 167 (233)
T ss_pred HHHHhcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHH
Confidence 21 23458999999753 23332 2222211 123567999987532 233333343 99999999999
Q ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHH
Q 048597 221 WRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLAL 257 (294)
Q Consensus 221 ~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 257 (294)
..++.+++.......+ .++...|++.|+|-.-.+
T Consensus 168 ~~iL~~~a~~~~l~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 168 AAVLRERAQRRGLALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 9999987754332222 366788999998766555
No 47
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=2e-06 Score=82.09 Aligned_cols=178 Identities=15% Similarity=0.127 Sum_probs=104.8
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHh-----hChh--------------HHHHHHHHHhCCC
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR-----ANLK--------------KIQADIGKKIGLS 138 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v-----~~~~--------------~i~~~i~~~~~~~ 138 (294)
..+||.+..+..|.+++..+. -...+.++|+.|+||||+|+.+ +... ..-..|...-...
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D 94 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVD 94 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCc
Confidence 467999999999999888762 3357799999999999999888 1100 0111111100000
Q ss_pred ---CCCcccCChHHHHHHHHHHh-----ccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEecCC-hHHh-h-cc
Q 048597 139 ---TKSWQENSFEDKALDIAGIL-----SRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTTNS-RVVC-G-QM 205 (294)
Q Consensus 139 ---~~~~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~-~-~~ 205 (294)
.........++..+.+ +.+ .++.-+++||+++. ...++.+...+......+++|++|.+ ..+. . ..
T Consensus 95 ~~eldaas~~~Vd~iReli-~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlS 173 (618)
T PRK14951 95 YTELDAASNRGVDEVQQLL-EQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLS 173 (618)
T ss_pred eeecCcccccCHHHHHHHH-HHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHH
Confidence 0000112233332222 222 24556899999986 45566666666544344556655543 3332 1 12
Q ss_pred CCceeecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHH
Q 048597 206 EATMLNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTV 260 (294)
Q Consensus 206 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i 260 (294)
.+..+++++++.++....+.+.+...+.... .+....|++.++|.+-.+..+
T Consensus 174 Rc~~~~f~~Ls~eei~~~L~~i~~~egi~ie---~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 174 RCLQFNLRPMAPETVLEHLTQVLAAENVPAE---PQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hceeeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 2334999999999999988887754432222 245688889999977555443
No 48
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=1.3e-06 Score=82.25 Aligned_cols=174 Identities=16% Similarity=0.093 Sum_probs=100.0
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChh--------------HHHHHHHHHhCCC---CC
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLK--------------KIQADIGKKIGLS---TK 140 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~--------------~i~~~i~~~~~~~---~~ 140 (294)
..++|.+..+..|...+..+. -...+.++|+.|+||||+|+.+.... ..-..|...-... ..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieid 94 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEID 94 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEee
Confidence 467999999999999887651 33568899999999999999883211 0001111000000 00
Q ss_pred CcccCChHH---HHHHHHHH-hccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEecCC-hHHhhcc--CCceee
Q 048597 141 SWQENSFED---KALDIAGI-LSRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTTNS-RVVCGQM--EATMLN 211 (294)
Q Consensus 141 ~~~~~~~~~---~~~~l~~~-l~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~--~~~~~~ 211 (294)
.......++ +...+... ..+++-++++|+++. ...++.+...+......+.+|++|.+ ..+.... .+..++
T Consensus 95 aas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~ 174 (546)
T PRK14957 95 AASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLH 174 (546)
T ss_pred cccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEE
Confidence 001111222 22222211 235677999999975 34566666666544445556554443 3332111 233399
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChH
Q 048597 212 ASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPL 255 (294)
Q Consensus 212 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl 255 (294)
+.+++.++....+.+.+...+... -......|++.++|.+-
T Consensus 175 f~~Ls~~eI~~~L~~il~~egi~~---e~~Al~~Ia~~s~GdlR 215 (546)
T PRK14957 175 LKHISQADIKDQLKIILAKENINS---DEQSLEYIAYHAKGSLR 215 (546)
T ss_pred eCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHH
Confidence 999999998888877654333111 12445788899999664
No 49
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.60 E-value=1.2e-06 Score=82.93 Aligned_cols=180 Identities=16% Similarity=0.151 Sum_probs=103.0
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhCh--------------hHHHHHHHHHhCCCC---C
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANL--------------KKIQADIGKKIGLST---K 140 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~--------------~~i~~~i~~~~~~~~---~ 140 (294)
..++|.+..++.+.+++..+. -.+.+.++||.|+||||+|+.+... -...+.+........ .
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieId 94 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELD 94 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEec
Confidence 467999999999999887652 3457899999999999999988211 111111111110000 0
Q ss_pred CcccCChHHHHHHHHHHh-----ccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEec-CChHHhhc-c-CCcee
Q 048597 141 SWQENSFEDKALDIAGIL-----SRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTT-NSRVVCGQ-M-EATML 210 (294)
Q Consensus 141 ~~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~~-~-~~~~~ 210 (294)
.......++.. .+.+.+ .+++-++++|+++. ...+..+...+......+.+|++| ....+... . .+..+
T Consensus 95 aas~igVd~IR-eIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~i 173 (605)
T PRK05896 95 AASNNGVDEIR-NIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRY 173 (605)
T ss_pred cccccCHHHHH-HHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhc
Confidence 00112222222 222221 23455799999875 345666655554333345555555 33333221 1 23349
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChH-HHHHHHH
Q 048597 211 NASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPL-ALKTVGR 262 (294)
Q Consensus 211 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~~i~~ 262 (294)
++.+++.++....+...+.......+ .+.+..+++.++|.+- |+..+-.
T Consensus 174 eF~~Ls~~eL~~~L~~il~kegi~Is---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 174 NFKKLNNSELQELLKSIAKKEKIKIE---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred ccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 99999999998888877644331122 2456788999999664 4444433
No 50
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=7.6e-07 Score=81.46 Aligned_cols=176 Identities=14% Similarity=0.084 Sum_probs=103.6
Q ss_pred CceeehhHHHHHHHHHHhcCCCCc-eEEEEEcCCCChHHHHHHHhhChhH----------------------HHHHHHHH
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNR-GIIGLYGTGGVGKTTLLKQRANLKK----------------------IQADIGKK 134 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~----------------------i~~~i~~~ 134 (294)
..++|.+..++.|..++..+ .. ..+.++||.|+||||+|..+..... .-..|...
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~--~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~ 93 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMG--RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAG 93 (397)
T ss_pred hhccChHHHHHHHHHHHHhC--CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcC
Confidence 46799999999999888876 44 4588999999999999988721110 00111110
Q ss_pred hCCCC---CCcccCChHHHHHHHHHHh-----ccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEec-CChHHhh
Q 048597 135 IGLST---KSWQENSFEDKALDIAGIL-----SRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTT-NSRVVCG 203 (294)
Q Consensus 135 ~~~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~ 203 (294)
..... ........++.. .+.+.+ .+.+-++|+|+++. ...++.+...+......+.+|++| +...+..
T Consensus 94 ~~~n~~~~~~~~~~~id~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 94 TSLNISEFDAASNNSVDDIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (397)
T ss_pred CCCCeEeecccccCCHHHHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHH
Confidence 00000 000111123332 233333 34566889999976 345666666665444456666555 3333332
Q ss_pred ccC--CceeecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHH
Q 048597 204 QME--ATMLNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKT 259 (294)
Q Consensus 204 ~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 259 (294)
... +..+++.++++++....+...+.......+ .+.+..|++.++|.+--+..
T Consensus 173 tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~---~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 173 TIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD---ADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 221 122899999999998888876643321122 35678899999997754443
No 51
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.59 E-value=1.5e-06 Score=78.32 Aligned_cols=179 Identities=15% Similarity=0.110 Sum_probs=103.3
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhH--------------HHHHHHHHhCCCC---C
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKK--------------IQADIGKKIGLST---K 140 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~--------------i~~~i~~~~~~~~---~ 140 (294)
..++|.+..++.+..++..+. -...+.++|++|+||||+|+.+..... .-..+........ .
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~ 92 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEID 92 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEee
Confidence 467999999999999887652 345788999999999999987722110 0011111100000 0
Q ss_pred CcccCChHHHHHHHHHHh-----ccCCeEEEEccccCc--cchhhhcCCcCCCCCCcEEEEecCChH-Hhh-ccC-Ccee
Q 048597 141 SWQENSFEDKALDIAGIL-----SRKRFVLLLDDIWEH--INLNKLGVPLQYLHLGSKIVFTTNSRV-VCG-QME-ATML 210 (294)
Q Consensus 141 ~~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~-~~~-~~~~ 210 (294)
........+. ..+.+.+ .+++-++++|++... .....+...+......+.+|++|.+.. +.. ... +..+
T Consensus 93 ~~~~~~~~~~-~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~ 171 (355)
T TIGR02397 93 AASNNGVDDI-REILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRF 171 (355)
T ss_pred ccccCCHHHH-HHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEE
Confidence 0001122221 2222222 245568899998653 445555545543334566666665443 221 111 2238
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHH
Q 048597 211 NASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVG 261 (294)
Q Consensus 211 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~ 261 (294)
++.++++++....+...+.......+ .+....+++.++|.|..+....
T Consensus 172 ~~~~~~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 172 DFKRIPLEDIVERLKKILDKEGIKIE---DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCChHHHHHHH
Confidence 89999999998888877644332222 3567888999999887665443
No 52
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=1.3e-06 Score=81.13 Aligned_cols=176 Identities=16% Similarity=0.119 Sum_probs=104.6
Q ss_pred CceeehhHHHHHHHHHHhcCCCCc-eEEEEEcCCCChHHHHHHHhhCh--------------hHHHHHHHHHhCCCC---
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNR-GIIGLYGTGGVGKTTLLKQRANL--------------KKIQADIGKKIGLST--- 139 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~~GiGKTtLa~~v~~~--------------~~i~~~i~~~~~~~~--- 139 (294)
..+||.+..++.|.+.+..+ .. ..+.++|+.|+||||+|+.+... -..-..|........
T Consensus 13 ~dliGQe~vv~~L~~a~~~~--ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei 90 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLN--KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI 90 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence 46799999999888888766 44 48999999999999999887210 011112221111100
Q ss_pred CCcccCChHHHHHHHHHHh-----ccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEecC-ChHHhhcc--CCce
Q 048597 140 KSWQENSFEDKALDIAGIL-----SRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTTN-SRVVCGQM--EATM 209 (294)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~~~~--~~~~ 209 (294)
........++... +.+.. .++.-++|+|+++. ....+.+...+......+++|++|. ...+...+ .+..
T Consensus 91 daas~~~vddIR~-Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~ 169 (491)
T PRK14964 91 DAASNTSVDDIKV-ILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQR 169 (491)
T ss_pred ecccCCCHHHHHH-HHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhhee
Confidence 0001122333322 22222 35667899999975 3445666555544444566665554 33443222 2233
Q ss_pred eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHH
Q 048597 210 LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKT 259 (294)
Q Consensus 210 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 259 (294)
+++.+++.++....+.+.+.......+ .+....|++.++|.+-.+..
T Consensus 170 ~~f~~l~~~el~~~L~~ia~~Egi~i~---~eAL~lIa~~s~GslR~als 216 (491)
T PRK14964 170 FDLQKIPTDKLVEHLVDIAKKENIEHD---EESLKLIAENSSGSMRNALF 216 (491)
T ss_pred eecccccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 999999999999988887755432222 24567889999888754433
No 53
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.56 E-value=4.3e-07 Score=70.30 Aligned_cols=43 Identities=30% Similarity=0.314 Sum_probs=35.2
Q ss_pred eehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChh
Q 048597 81 IRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLK 125 (294)
Q Consensus 81 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 125 (294)
+|++..+..+...+... ....+.|+|++|+|||||++.+.+..
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 36788888888888764 45789999999999999999985543
No 54
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=1.7e-06 Score=82.18 Aligned_cols=182 Identities=16% Similarity=0.166 Sum_probs=106.3
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChh--------------HHHHHHHHHhCCCCCCc-
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLK--------------KIQADIGKKIGLSTKSW- 142 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~--------------~i~~~i~~~~~~~~~~~- 142 (294)
..++|.+..+..|.+++..+ .-...+.++|+.|+||||+|+.+.... ..-+.|...........
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId 94 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEID 94 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEe
Confidence 46789998888888888765 124688899999999999998872111 11111111111000000
Q ss_pred --ccCChHHHHHHHHHHh-----ccCCeEEEEccccCc--cchhhhcCCcCCCCCCcEEEEecCC-hHHhhcc--CCcee
Q 048597 143 --QENSFEDKALDIAGIL-----SRKRFVLLLDDIWEH--INLNKLGVPLQYLHLGSKIVFTTNS-RVVCGQM--EATML 210 (294)
Q Consensus 143 --~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~--~~~~~ 210 (294)
.....++. ..+.+.+ .+++-++|+|+++.. ...+.|...+........+|++|.+ ..+...+ .+..+
T Consensus 95 ~a~~~~Id~i-R~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i 173 (624)
T PRK14959 95 GASNRGIDDA-KRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHF 173 (624)
T ss_pred cccccCHHHH-HHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhcc
Confidence 01122222 2233332 356679999999763 4455665555433334556665544 3332211 12349
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCCh-HHHHHHHHHH
Q 048597 211 NASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLP-LALKTVGRAM 264 (294)
Q Consensus 211 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-lai~~i~~~L 264 (294)
++.+++.++....+.+.+.......+ .+....|++.++|.+ .|+..+..++
T Consensus 174 ~F~pLs~~eL~~~L~~il~~egi~id---~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 174 TFTRLSEAGLEAHLTKVLGREGVDYD---PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred ccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999888876654332122 356788999999965 5666665443
No 55
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.5e-05 Score=71.80 Aligned_cols=182 Identities=16% Similarity=0.165 Sum_probs=110.0
Q ss_pred cCceeehhHHHHHHHHHHhcC--CCCceEEEEEcCCCChHHHHHHHh---------------------hChhHHHHHHHH
Q 048597 77 ERTVIRQELLLDRVWRFVTDQ--ERNRGIIGLYGTGGVGKTTLLKQR---------------------ANLKKIQADIGK 133 (294)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~~GiGKTtLa~~v---------------------~~~~~i~~~i~~ 133 (294)
+..+.+|+.+++++...|..- ...+.-+.|+|+.|+|||+.++.+ .+..++...+..
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHH
Confidence 445899999999999988652 223344999999999999999998 234467777777
Q ss_pred HhCCCCCCcccCChHHHHHHHHHHh--ccCCeEEEEccccCccch--hhhcCCcCC-CCCCcEE--EEecCChHH-----
Q 048597 134 KIGLSTKSWQENSFEDKALDIAGIL--SRKRFVLLLDDIWEHINL--NKLGVPLQY-LHLGSKI--VFTTNSRVV----- 201 (294)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlvlDdv~~~~~~--~~l~~~l~~-~~~gs~i--ivTtr~~~v----- 201 (294)
.++.... ......+....+.+.+ .++.+++|||++.....- +.+...+.. ....++| |..+.+...
T Consensus 96 ~~~~~p~--~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 96 KLGKVPL--TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HcCCCCC--CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 7752111 2344555666666666 467899999999763221 222111111 1113443 334443332
Q ss_pred ---hhccCCceeecCCCCHHHHHHHHHHHh---CCCCCCCCCCHHHHHHHHHHhCC-CChHHHHHHH
Q 048597 202 ---CGQMEATMLNASPLRDEEAWRLFEEAV---GRYVLDSHPDIPELAKTMAEECC-CLPLALKTVG 261 (294)
Q Consensus 202 ---~~~~~~~~~~l~~L~~~~~~~Lf~~~~---~~~~~~~~~~~~~~~~~I~~~c~-GlPlai~~i~ 261 (294)
....+...+...|-+.++-..++..++ +... ..+++..+++..++..-+ -.-.|+..+-
T Consensus 174 ~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~-~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 174 PRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAG-VIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred hhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCC-CcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 233334448899999999999998877 3333 233444444444444444 4455555543
No 56
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=1.7e-06 Score=81.23 Aligned_cols=177 Identities=15% Similarity=0.076 Sum_probs=102.3
Q ss_pred CceeehhHHHHHHHHHHhcCCCCc-eEEEEEcCCCChHHHHHHHhhChh--------------HHHHHHHHHhCCC---C
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNR-GIIGLYGTGGVGKTTLLKQRANLK--------------KIQADIGKKIGLS---T 139 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~--------------~i~~~i~~~~~~~---~ 139 (294)
..+||.+..+..|.+++..+ .. ..+.++|+.|+||||+|+.+.... ..-..|...-... .
T Consensus 16 ~divGq~~v~~~L~~~~~~~--~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei 93 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQ--YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV 93 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhC--CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE
Confidence 46899999999999999876 44 467899999999999998872111 1111111100000 0
Q ss_pred CCcccCChHHHHHHHHHHh-----ccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEecCCh-HHh-hcc-CCce
Q 048597 140 KSWQENSFEDKALDIAGIL-----SRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTTNSR-VVC-GQM-EATM 209 (294)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~-~~~-~~~~ 209 (294)
........++..+ +.+.+ .++.-++++|+++. ....+.+...+......+++|++|.+. .+. +.. .+..
T Consensus 94 daas~~~v~~iR~-l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~ 172 (509)
T PRK14958 94 DAASRTKVEDTRE-LLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQ 172 (509)
T ss_pred cccccCCHHHHHH-HHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhh
Confidence 0001222333322 22222 35667899999986 345565655554433456666655433 222 111 1223
Q ss_pred eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHH
Q 048597 210 LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTV 260 (294)
Q Consensus 210 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i 260 (294)
+++.+++.++....+.+.+...+.... .+....|++.++|.+..+..+
T Consensus 173 ~~f~~l~~~~i~~~l~~il~~egi~~~---~~al~~ia~~s~GslR~al~l 220 (509)
T PRK14958 173 FHLAQLPPLQIAAHCQHLLKEENVEFE---NAALDLLARAANGSVRDALSL 220 (509)
T ss_pred hhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHH
Confidence 889999999887777666543332211 234578888999988555443
No 57
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.52 E-value=2.1e-06 Score=84.73 Aligned_cols=174 Identities=13% Similarity=0.083 Sum_probs=102.1
Q ss_pred CceeehhHHHHHHHHHHhcCCCCc-eEEEEEcCCCChHHHHHHHhhChh--------------HHHHHHHHH----hCCC
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNR-GIIGLYGTGGVGKTTLLKQRANLK--------------KIQADIGKK----IGLS 138 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~--------------~i~~~i~~~----~~~~ 138 (294)
..+||.+..++.|.+++..+ ++ ..+.++|+.|+||||+|+.+.... ..-..|... +.+.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~--ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~ 92 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSG--RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVT 92 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEE
Confidence 46799999999999999876 44 468999999999999998882111 001111111 0000
Q ss_pred -CCCcccCChHHHHHHHHHH-----hccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEecC-ChHHhhccC--C
Q 048597 139 -TKSWQENSFEDKALDIAGI-----LSRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTTN-SRVVCGQME--A 207 (294)
Q Consensus 139 -~~~~~~~~~~~~~~~l~~~-----l~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~~~~~--~ 207 (294)
.+.......++.. .+.+. ..++.-++|||+++. ...++.|...+..-...+.+|++|. ...+...+. +
T Consensus 93 eidaas~~~Vd~iR-~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc 171 (824)
T PRK07764 93 EIDAASHGGVDDAR-ELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRT 171 (824)
T ss_pred EecccccCCHHHHH-HHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhe
Confidence 0000112233332 23322 245666899999976 3556666666654444555555554 334433222 3
Q ss_pred ceeecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHH
Q 048597 208 TMLNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLAL 257 (294)
Q Consensus 208 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 257 (294)
..|++.+++.++....+.+.+....... -.+....|++.++|.+..+
T Consensus 172 ~~v~F~~l~~~~l~~~L~~il~~EGv~i---d~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 172 HHYPFRLVPPEVMRGYLERICAQEGVPV---EPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred eEEEeeCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 3399999999999888887664333111 1244577888899877433
No 58
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.52 E-value=2.2e-06 Score=71.97 Aligned_cols=168 Identities=17% Similarity=0.216 Sum_probs=87.5
Q ss_pred cCceeehh-HHHHHHHHHHhcC-CCCceEEEEEcCCCChHHHHHHHhhChh---------------HHHHHHHHHhCCCC
Q 048597 77 ERTVIRQE-LLLDRVWRFVTDQ-ERNRGIIGLYGTGGVGKTTLLKQRANLK---------------KIQADIGKKIGLST 139 (294)
Q Consensus 77 ~~~~vGr~-~~~~~l~~~L~~~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~---------------~i~~~i~~~~~~~~ 139 (294)
++.++|-. +..-.....+... ......+.|+|+.|+|||.|++.+++.. +....+...+.-
T Consensus 8 dnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~-- 85 (219)
T PF00308_consen 8 DNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRD-- 85 (219)
T ss_dssp CCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHT--
T ss_pred ccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHc--
Confidence 34455642 2223333334333 3345678999999999999999885432 122222222210
Q ss_pred CCcccCChHHHHHHHHHHhccCCeEEEEccccCc---cchhh-hcCCcCC-CCCCcEEEEecCChH---------Hhhcc
Q 048597 140 KSWQENSFEDKALDIAGILSRKRFVLLLDDIWEH---INLNK-LGVPLQY-LHLGSKIVFTTNSRV---------VCGQM 205 (294)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~---~~~~~-l~~~l~~-~~~gs~iivTtr~~~---------v~~~~ 205 (294)
. ....+.+.++ .-=+|++||++.. ..|.. +...+.. ...|.++|+|+.... ..+.+
T Consensus 86 -----~----~~~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl 155 (219)
T PF00308_consen 86 -----G----EIEEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRL 155 (219)
T ss_dssp -----T----SHHHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHH
T ss_pred -----c----cchhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhH
Confidence 0 1122334444 3348889999763 22332 2211211 123668999995432 23334
Q ss_pred CCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHH
Q 048597 206 EATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKT 259 (294)
Q Consensus 206 ~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 259 (294)
.... ++++++++++...++.+.+....... -.++..-|++.+.+..-.+..
T Consensus 156 ~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l---~~~v~~~l~~~~~~~~r~L~~ 207 (219)
T PF00308_consen 156 SWGLVVELQPPDDEDRRRILQKKAKERGIEL---PEEVIEYLARRFRRDVRELEG 207 (219)
T ss_dssp HCSEEEEE----HHHHHHHHHHHHHHTT--S----HHHHHHHHHHTTSSHHHHHH
T ss_pred hhcchhhcCCCCHHHHHHHHHHHHHHhCCCC---cHHHHHHHHHhhcCCHHHHHH
Confidence 4444 99999999999999999886544222 236667777776655444433
No 59
>PRK05642 DNA replication initiation factor; Validated
Probab=98.51 E-value=2e-06 Score=72.97 Aligned_cols=149 Identities=16% Similarity=0.197 Sum_probs=85.6
Q ss_pred ceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHHH---HHHHHHHhccCCeEEEEccccC---cc
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFEDK---ALDIAGILSRKRFVLLLDDIWE---HI 174 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~~---~~~l~~~l~~kr~LlvlDdv~~---~~ 174 (294)
...+.|+|+.|+|||.|++.+.+... .. +...- -.+..++ ...+.+.+..-. +|++||+.. ..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~------~~-~~~v~---y~~~~~~~~~~~~~~~~~~~~d-~LiiDDi~~~~~~~ 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE------QR-GEPAV---YLPLAELLDRGPELLDNLEQYE-LVCLDDLDVIAGKA 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH------hC-CCcEE---EeeHHHHHhhhHHHHHhhhhCC-EEEEechhhhcCCh
Confidence 46789999999999999998854221 00 10000 0011111 122333333333 688999964 23
Q ss_pred chhh-hcCCcCC-CCCCcEEEEecCChHH---------hhccCCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHH
Q 048597 175 NLNK-LGVPLQY-LHLGSKIVFTTNSRVV---------CGQMEATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPEL 242 (294)
Q Consensus 175 ~~~~-l~~~l~~-~~~gs~iivTtr~~~v---------~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~ 242 (294)
.|.. +...+.. ...|..+|+|++.... ..++.... +.++++++++-..+++.++.......+ .++
T Consensus 114 ~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~---~ev 190 (234)
T PRK05642 114 DWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLT---DEV 190 (234)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCC---HHH
Confidence 4543 3333321 2235678888875332 22333334 889999999999999866643322222 467
Q ss_pred HHHHHHhCCCChHHHHHHHHH
Q 048597 243 AKTMAEECCCLPLALKTVGRA 263 (294)
Q Consensus 243 ~~~I~~~c~GlPlai~~i~~~ 263 (294)
..-|++.+.|..-.+..+-..
T Consensus 191 ~~~L~~~~~~d~r~l~~~l~~ 211 (234)
T PRK05642 191 GHFILTRGTRSMSALFDLLER 211 (234)
T ss_pred HHHHHHhcCCCHHHHHHHHHH
Confidence 788888888876555544433
No 60
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.50 E-value=8.9e-07 Score=75.80 Aligned_cols=167 Identities=14% Similarity=0.100 Sum_probs=101.1
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhC---hhHHHHHHHHHhCCCCCCcccCChHHHHHHH
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRAN---LKKIQADIGKKIGLSTKSWQENSFEDKALDI 154 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~---~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l 154 (294)
..++|.+..+.-|.+.+... ..+....+||+|.|||+-|..... -.++...=...+..+.. ...+. ...++
T Consensus 36 de~~gQe~vV~~L~~a~~~~--~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSde--rGisv--vr~Ki 109 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRR--ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDE--RGISV--VREKI 109 (346)
T ss_pred HhhcchHHHHHHHHHHHhhc--CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccc--ccccc--hhhhh
Confidence 46789999999999998884 789999999999999998876521 11111110000111100 01110 11111
Q ss_pred HH--Hhcc----------CC-eEEEEccccC--ccchhhhcCCcCCCCCCcEEEEecCChH-Hhhcc--CCceeecCCCC
Q 048597 155 AG--ILSR----------KR-FVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTTNSRV-VCGQM--EATMLNASPLR 216 (294)
Q Consensus 155 ~~--~l~~----------kr-~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~--~~~~~~l~~L~ 216 (294)
+. .+.. .+ -++|||+.++ .+.|..+...+......++.++.+..-. +.... .+..+..++|.
T Consensus 110 k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~ 189 (346)
T KOG0989|consen 110 KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLK 189 (346)
T ss_pred cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcc
Confidence 11 1111 12 4788999987 5789988777766555566655554332 21111 12239999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCC
Q 048597 217 DEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCL 253 (294)
Q Consensus 217 ~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl 253 (294)
+++...-++..+..++...+. +..+.|++.++|-
T Consensus 190 d~~iv~rL~~Ia~~E~v~~d~---~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 190 DEDIVDRLEKIASKEGVDIDD---DALKLIAKISDGD 223 (346)
T ss_pred hHHHHHHHHHHHHHhCCCCCH---HHHHHHHHHcCCc
Confidence 999988888877655533333 5568899999884
No 61
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=2.5e-06 Score=81.82 Aligned_cols=178 Identities=12% Similarity=0.124 Sum_probs=104.4
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChh---------------HHHHHHHHHhCCCC---
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLK---------------KIQADIGKKIGLST--- 139 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~---------------~i~~~i~~~~~~~~--- 139 (294)
..++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+.... .....+........
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i 94 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEM 94 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEE
Confidence 468999999999988888652 33567899999999999999882111 11222222111100
Q ss_pred CCcccCChHHHHHHHHHHh-----ccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEecCC-hHHhhcc--CCce
Q 048597 140 KSWQENSFEDKALDIAGIL-----SRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTTNS-RVVCGQM--EATM 209 (294)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~--~~~~ 209 (294)
........++. ..+.+.+ .+++-++|+|+++. ....+.+...+......+.+|+++.+ ..+.... .+..
T Consensus 95 ~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~ 173 (585)
T PRK14950 95 DAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQR 173 (585)
T ss_pred eccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccce
Confidence 00011222322 2233322 24567899999875 34455565555443344566655543 3332211 1223
Q ss_pred eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHH
Q 048597 210 LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTV 260 (294)
Q Consensus 210 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i 260 (294)
+.+.+++.++....+...+...+...+ .+....|++.|+|.+..+...
T Consensus 174 i~f~~l~~~el~~~L~~~a~~egl~i~---~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 174 FDFHRHSVADMAAHLRKIAAAEGINLE---PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred eeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 889999999988888877654332222 356788999999988655443
No 62
>PRK06620 hypothetical protein; Validated
Probab=98.48 E-value=2.4e-06 Score=71.38 Aligned_cols=160 Identities=12% Similarity=0.043 Sum_probs=88.9
Q ss_pred cCceeeh-hH-HHHHHHHHHhcCCCCc--eEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHHHHH
Q 048597 77 ERTVIRQ-EL-LLDRVWRFVTDQERNR--GIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFEDKAL 152 (294)
Q Consensus 77 ~~~~vGr-~~-~~~~l~~~L~~~~~~~--~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~ 152 (294)
++.++|. .. ....+..+-.....+. +.+.|+|++|+|||+|++.+.+.... ...+.. ....
T Consensus 16 d~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~~~--------~~~~ 80 (214)
T PRK06620 16 DEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIKDI--------FFNE 80 (214)
T ss_pred hhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCC-------EEcchh--------hhch
Confidence 4556776 22 3344444332211122 67999999999999999976443210 001000 0000
Q ss_pred HHHHHhccCCeEEEEccccCccchhhhcCCcCC-CCCCcEEEEecCChH-------HhhccCCce-eecCCCCHHHHHHH
Q 048597 153 DIAGILSRKRFVLLLDDIWEHINLNKLGVPLQY-LHLGSKIVFTTNSRV-------VCGQMEATM-LNASPLRDEEAWRL 223 (294)
Q Consensus 153 ~l~~~l~~kr~LlvlDdv~~~~~~~~l~~~l~~-~~~gs~iivTtr~~~-------v~~~~~~~~-~~l~~L~~~~~~~L 223 (294)
+.. ...-++++||++...+ ..+...+.. ...|..+++|++... ..+++.... ++++++++++...+
T Consensus 81 ---~~~-~~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~ 155 (214)
T PRK06620 81 ---EIL-EKYNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKIL 155 (214)
T ss_pred ---hHH-hcCCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHH
Confidence 111 2345789999974221 112111110 134668888887433 233444444 99999999998888
Q ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHH
Q 048597 224 FEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKT 259 (294)
Q Consensus 224 f~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 259 (294)
+++.+.......+ .++..-|++.+.|---.+.-
T Consensus 156 l~k~~~~~~l~l~---~ev~~~L~~~~~~d~r~l~~ 188 (214)
T PRK06620 156 IFKHFSISSVTIS---RQIIDFLLVNLPREYSKIIE 188 (214)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHHccCCHHHHHH
Confidence 8887753332222 36778888888876544443
No 63
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.46 E-value=4.1e-06 Score=77.73 Aligned_cols=169 Identities=14% Similarity=0.151 Sum_probs=97.4
Q ss_pred ceEEEEEcCCCChHHHHHHHhhChh---------------HHHHHHHHHhCCCCCCcccCChHHHHHHHHHHhccCCeEE
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRANLK---------------KIQADIGKKIGLSTKSWQENSFEDKALDIAGILSRKRFVL 165 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~~~~---------------~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~Ll 165 (294)
...+.|+|+.|+|||+|++.+.+.. ++...+...+.. .......+.+.+. ..-+|
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~---------~~~~~~~~~~~~~-~~dvL 210 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQK---------THKEIEQFKNEIC-QNDVL 210 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHH---------hhhHHHHHHHHhc-cCCEE
Confidence 4578999999999999999885421 122222222210 0011222333333 34488
Q ss_pred EEccccCc---cch-hhhcCCcCC-CCCCcEEEEecCCh---------HHhhccCCce-eecCCCCHHHHHHHHHHHhCC
Q 048597 166 LLDDIWEH---INL-NKLGVPLQY-LHLGSKIVFTTNSR---------VVCGQMEATM-LNASPLRDEEAWRLFEEAVGR 230 (294)
Q Consensus 166 vlDdv~~~---~~~-~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~ 230 (294)
++||+... ..+ +.+...|.. ...|..||+|+... .+..++.... +.+++++.++-..++.+++..
T Consensus 211 iIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~ 290 (450)
T PRK14087 211 IIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKN 290 (450)
T ss_pred EEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHh
Confidence 99999652 222 233322221 12345688887543 2233344444 889999999999999998854
Q ss_pred CCCCCCCCHHHHHHHHHHhCCCChHHHHHHHHHH------c---CCCCHHHHHHHHHHH
Q 048597 231 YVLDSHPDIPELAKTMAEECCCLPLALKTVGRAM------R---SISSIEEWEHAIKII 280 (294)
Q Consensus 231 ~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~~L------~---~~~~~~~w~~~l~~l 280 (294)
.... ..--.++..-|++.++|.|-.+..+...+ . ..-+.+.-+.++..+
T Consensus 291 ~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 291 QNIK-QEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred cCCC-CCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 3211 12235778999999999997776554322 2 113455556665554
No 64
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=4e-06 Score=79.28 Aligned_cols=175 Identities=13% Similarity=0.059 Sum_probs=100.5
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChh--------------HHHHHHHHHhCCC---CC
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLK--------------KIQADIGKKIGLS---TK 140 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~--------------~i~~~i~~~~~~~---~~ 140 (294)
..++|.+..+..+.+++..+. -...+.++|+.|+||||+|+.+.... ..-..+...-... ..
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~ 94 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVD 94 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEee
Confidence 467999999999999988751 23467899999999999998882111 0001111000000 00
Q ss_pred CcccCChHHHHHHHHHHh-----ccCCeEEEEccccCc--cchhhhcCCcCCCCCCcEEEEecCCh-HHhhccC--Ccee
Q 048597 141 SWQENSFEDKALDIAGIL-----SRKRFVLLLDDIWEH--INLNKLGVPLQYLHLGSKIVFTTNSR-VVCGQME--ATML 210 (294)
Q Consensus 141 ~~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~--~~~~ 210 (294)
.......++.. .+.+.. .+++-++|+|+++.. ...+.+...+......+.+|++|.+. .+..... +..+
T Consensus 95 ~~~~~~vd~ir-~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~ 173 (527)
T PRK14969 95 AASNTQVDAMR-ELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQF 173 (527)
T ss_pred ccccCCHHHHH-HHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHH
Confidence 00112233322 222222 356679999999863 34555555554433445666555443 2221111 2239
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHH
Q 048597 211 NASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLAL 257 (294)
Q Consensus 211 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 257 (294)
++.+++.++....+.+.+...+... -......|++.++|.+--+
T Consensus 174 ~f~~l~~~~i~~~L~~il~~egi~~---~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 174 NLKQMPPPLIVSHLQHILEQENIPF---DATALQLLARAAAGSMRDA 217 (527)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 9999999999888877664333111 1245578899999977533
No 65
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.44 E-value=1.1e-06 Score=67.25 Aligned_cols=95 Identities=26% Similarity=0.349 Sum_probs=60.2
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC------------------------hhHHHHHHHHHhCCCCCCcccCChHHHHHHHH
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN------------------------LKKIQADIGKKIGLSTKSWQENSFEDKALDIA 155 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~------------------------~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~ 155 (294)
+.+++.|+|++|+|||++++.+.. ...+...+...++..... ..+...+...+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHH
Confidence 457899999999999999999822 345677788888764442 345677777888
Q ss_pred HHhccCCe-EEEEccccCc---cchhhhcCCcCCCCCCcEEEEecCC
Q 048597 156 GILSRKRF-VLLLDDIWEH---INLNKLGVPLQYLHLGSKIVFTTNS 198 (294)
Q Consensus 156 ~~l~~kr~-LlvlDdv~~~---~~~~~l~~~l~~~~~gs~iivTtr~ 198 (294)
+.+...+. +||+||++.. ..++.+...+. ..+.++|+..+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 88866655 9999999764 22333322222 456677776654
No 66
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.43 E-value=1.8e-05 Score=72.23 Aligned_cols=196 Identities=17% Similarity=0.165 Sum_probs=108.5
Q ss_pred CceeehhHHHHHHHHHHhcC-----------CCCceEEEEEcCCCChHHHHHHHhhChhH-----HH-HHHHHHhCCCCC
Q 048597 78 RTVIRQELLLDRVWRFVTDQ-----------ERNRGIIGLYGTGGVGKTTLLKQRANLKK-----IQ-ADIGKKIGLSTK 140 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-----i~-~~i~~~~~~~~~ 140 (294)
..+.|++..++++.+.+... -..++-|.++|++|+|||++|+.+.+... +. ..+....
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~----- 205 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKF----- 205 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhh-----
Confidence 35789999999988876431 12456799999999999999999854221 00 0010000
Q ss_pred CcccCChHHHHHHHHHHh-ccCCeEEEEccccCcc------------c----hhhhcCCcC--CCCCCcEEEEecCChHH
Q 048597 141 SWQENSFEDKALDIAGIL-SRKRFVLLLDDIWEHI------------N----LNKLGVPLQ--YLHLGSKIVFTTNSRVV 201 (294)
Q Consensus 141 ~~~~~~~~~~~~~l~~~l-~~kr~LlvlDdv~~~~------------~----~~~l~~~l~--~~~~gs~iivTtr~~~v 201 (294)
... .......+.+.. .....+|+|||+.... . +..+...+. ....+..||.||.....
T Consensus 206 --~g~-~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ 282 (389)
T PRK03992 206 --IGE-GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDI 282 (389)
T ss_pred --ccc-hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhh
Confidence 011 112222333332 3456899999997520 1 111111111 11234567777765432
Q ss_pred hh--cc---CCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCCh-HHHHHH---HHH--HcCC--
Q 048597 202 CG--QM---EATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLP-LALKTV---GRA--MRSI-- 267 (294)
Q Consensus 202 ~~--~~---~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-lai~~i---~~~--L~~~-- 267 (294)
.. .. .... +++.+.+.++-.++|+.++.........++ ..+++.+.|+- --+..+ |++ ++.+
T Consensus 283 ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~----~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~ 358 (389)
T PRK03992 283 LDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDL----EELAELTEGASGADLKAICTEAGMFAIRDDRT 358 (389)
T ss_pred CCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCH----HHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 11 11 2234 999999999999999987754332222333 55667777754 222222 222 2222
Q ss_pred -CCHHHHHHHHHHHHhcCC
Q 048597 268 -SSIEEWEHAIKIILRYGR 285 (294)
Q Consensus 268 -~~~~~w~~~l~~l~~~~~ 285 (294)
-+.++...+++.++....
T Consensus 359 ~i~~~d~~~A~~~~~~~~~ 377 (389)
T PRK03992 359 EVTMEDFLKAIEKVMGKEE 377 (389)
T ss_pred CcCHHHHHHHHHHHhcccc
Confidence 356778888777766543
No 67
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.42 E-value=1.9e-06 Score=75.52 Aligned_cols=151 Identities=17% Similarity=0.136 Sum_probs=87.0
Q ss_pred CceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHHHHHHHHH--HhccCCeEEEEccccCc--cc
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFEDKALDIAG--ILSRKRFVLLLDDIWEH--IN 175 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~--~l~~kr~LlvlDdv~~~--~~ 175 (294)
.++.+.+||++|+||||||+.+.+..+-.. ...+.++.......+..+..+.-++ .+.++|.+|++|+|+.- .+
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvelSAt~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQ 238 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVELSATNAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQ 238 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEEeccccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhh
Confidence 788999999999999999998843322111 1111111111122233333333332 24688999999999752 22
Q ss_pred hhhhcCCcCCCCCCcEEEE--ecCChHH----hhccCCceeecCCCCHHHHHHHHHHHhC---CCCC----CCCCC---H
Q 048597 176 LNKLGVPLQYLHLGSKIVF--TTNSRVV----CGQMEATMLNASPLRDEEAWRLFEEAVG---RYVL----DSHPD---I 239 (294)
Q Consensus 176 ~~~l~~~l~~~~~gs~iiv--Ttr~~~v----~~~~~~~~~~l~~L~~~~~~~Lf~~~~~---~~~~----~~~~~---~ 239 (294)
-+ ..||...+|+-++| ||.+... +-...+..+-|++|..+.-..++.+... .... .+++. -
T Consensus 239 QD---~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve 315 (554)
T KOG2028|consen 239 QD---TFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVE 315 (554)
T ss_pred hh---cccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhh
Confidence 22 23566777876665 5555443 2223334488999999999988887442 1111 11111 1
Q ss_pred HHHHHHHHHhCCCChH
Q 048597 240 PELAKTMAEECCCLPL 255 (294)
Q Consensus 240 ~~~~~~I~~~c~GlPl 255 (294)
..+..-++..|.|-.-
T Consensus 316 ~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 316 DSIIDYLAYLSDGDAR 331 (554)
T ss_pred HHHHHHHHHhcCchHH
Confidence 2455667778888653
No 68
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=9.6e-06 Score=77.70 Aligned_cols=173 Identities=14% Similarity=0.100 Sum_probs=99.4
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhH----------------------HHHHHHHHh
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKK----------------------IQADIGKKI 135 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~----------------------i~~~i~~~~ 135 (294)
..++|.+..+..|.+++..+ .-...+.++|+.|+||||+|+.+..... .-..|...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 46799999999999988765 1335688999999999999988721110 000111100
Q ss_pred CCCCCCc---ccCChHHHHHHHHHHh-----ccCCeEEEEccccCc--cchhhhcCCcCCCCCCcEEEEec-CChHHhhc
Q 048597 136 GLSTKSW---QENSFEDKALDIAGIL-----SRKRFVLLLDDIWEH--INLNKLGVPLQYLHLGSKIVFTT-NSRVVCGQ 204 (294)
Q Consensus 136 ~~~~~~~---~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~~ 204 (294)
....... .....++... +.+.+ .+.+-++|+|+++.. ...+.+...+......+.+|++| +...+...
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~-l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~T 173 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQ-LRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (620)
T ss_pred CCCeEEecccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 0000000 1112333332 22222 355668899998763 44556655554433345555444 43333322
Q ss_pred -c-CCceeecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChH
Q 048597 205 -M-EATMLNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPL 255 (294)
Q Consensus 205 -~-~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl 255 (294)
. .+..+++.+++.++....+.+.+.......+ .+.+..|++.++|..-
T Consensus 174 I~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~---~eal~~La~~s~Gdlr 223 (620)
T PRK14954 174 IASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID---ADALQLIARKAQGSMR 223 (620)
T ss_pred HHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHH
Confidence 2 2333999999999988888776643321122 3567889999999554
No 69
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.40 E-value=1.4e-06 Score=75.15 Aligned_cols=145 Identities=13% Similarity=0.120 Sum_probs=75.4
Q ss_pred ceeehhHHHHHHHHH---Hhc----------CCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCC-CCCCcc-
Q 048597 79 TVIRQELLLDRVWRF---VTD----------QERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGL-STKSWQ- 143 (294)
Q Consensus 79 ~~vGr~~~~~~l~~~---L~~----------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~-~~~~~~- 143 (294)
.++|.+..+++|.+. +.. .......+.++|++|+||||+|+.+..... ..+. +....-
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~-------~~~~~~~~~~v~ 79 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFK-------EMNVLSKGHLIE 79 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHH-------hcCcccCCceEE
Confidence 468887766655433 311 122456788999999999999998854321 1111 000000
Q ss_pred -------cCChHHHHHHHHHHhc-cCCeEEEEccccCc----------cchhhhcCCcCCCCCCcEEEEecCChHH----
Q 048597 144 -------ENSFEDKALDIAGILS-RKRFVLLLDDIWEH----------INLNKLGVPLQYLHLGSKIVFTTNSRVV---- 201 (294)
Q Consensus 144 -------~~~~~~~~~~l~~~l~-~kr~LlvlDdv~~~----------~~~~~l~~~l~~~~~gs~iivTtr~~~v---- 201 (294)
.....+....+.+.+. ....+|++|+++.. +..+.+...+........+++++.....
T Consensus 80 ~~~~~l~~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~ 159 (261)
T TIGR02881 80 VERADLVGEYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFL 159 (261)
T ss_pred ecHHHhhhhhccchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHH
Confidence 0000001112222221 12358999999752 1233333333333333355555543221
Q ss_pred ------hhccCCceeecCCCCHHHHHHHHHHHhCCC
Q 048597 202 ------CGQMEATMLNASPLRDEEAWRLFEEAVGRY 231 (294)
Q Consensus 202 ------~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~ 231 (294)
...+ ...+++.+++.++..+++++.+...
T Consensus 160 ~~~p~L~sRf-~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 160 SLNPGLRSRF-PISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred hcChHHHhcc-ceEEEECCCCHHHHHHHHHHHHHHc
Confidence 2222 1128899999999999998877543
No 70
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=8.8e-06 Score=77.42 Aligned_cols=173 Identities=12% Similarity=0.043 Sum_probs=100.6
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChh--------------HHHHHHHHHhCCC-----
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLK--------------KIQADIGKKIGLS----- 138 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~--------------~i~~~i~~~~~~~----- 138 (294)
..++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.+.... ..-..|...-+..
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvie 91 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVE 91 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEE
Confidence 467999999999999998761 33457899999999999999882111 1111111100000
Q ss_pred CCCcccCChHHHHHHHHHHh-----ccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEE-ecCChHHhhcc--CCc
Q 048597 139 TKSWQENSFEDKALDIAGIL-----SRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVF-TTNSRVVCGQM--EAT 208 (294)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~v~~~~--~~~ 208 (294)
.........++. ..+.+.+ .+++-++|+|+++. ....+.|...+......+.+|+ ||....+...+ .+.
T Consensus 92 idaas~~gvd~i-Rel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~ 170 (584)
T PRK14952 92 LDAASHGGVDDT-RELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTH 170 (584)
T ss_pred eccccccCHHHH-HHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhce
Confidence 000011122222 2222222 35666899999875 4456666555554333455554 44444433221 233
Q ss_pred eeecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChH
Q 048597 209 MLNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPL 255 (294)
Q Consensus 209 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl 255 (294)
.+++.+++.++..+.+.+.+........ .+....|++.++|.+-
T Consensus 171 ~~~F~~l~~~~i~~~L~~i~~~egi~i~---~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 171 HYPFRLLPPRTMRALIARICEQEGVVVD---DAVYPLVIRAGGGSPR 214 (584)
T ss_pred EEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHH
Confidence 4999999999988888776644331111 2455778888888764
No 71
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=9.1e-06 Score=76.32 Aligned_cols=179 Identities=12% Similarity=0.038 Sum_probs=103.9
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChh--------------HHHHHHHHHhCCC---CC
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLK--------------KIQADIGKKIGLS---TK 140 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~--------------~i~~~i~~~~~~~---~~ 140 (294)
..++|-+.....+...+..+. -...+.++|+.|+||||+|+.+.... ..-..+....... ..
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eld 92 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMD 92 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEec
Confidence 468999999999999987762 33467899999999999998762110 0011111111100 00
Q ss_pred CcccCChHHHHHHHHHH----hccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEecCCh-HHhh--ccCCceee
Q 048597 141 SWQENSFEDKALDIAGI----LSRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTTNSR-VVCG--QMEATMLN 211 (294)
Q Consensus 141 ~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~--~~~~~~~~ 211 (294)
.......++....+... ..+++-++|+|+++. ....+.+...+......+++|++|.+. .+.. .-.+..++
T Consensus 93 aas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~ 172 (535)
T PRK08451 93 AASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFR 172 (535)
T ss_pred cccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEE
Confidence 00111233433333221 124566899999976 344555555554433456666666543 2211 11233499
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHH
Q 048597 212 ASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTV 260 (294)
Q Consensus 212 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i 260 (294)
+.+++.++....+.+.+...+.... .+....|++.++|.+--+..+
T Consensus 173 F~~Ls~~ei~~~L~~Il~~EGi~i~---~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 173 FKQIPQNSIISHLKTILEKEGVSYE---PEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHH
Confidence 9999999998888876654332222 356688899999988555443
No 72
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.38 E-value=1.4e-06 Score=86.75 Aligned_cols=173 Identities=14% Similarity=0.137 Sum_probs=91.4
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhH---HHHHHH-HHhC-CCCCCc-----ccCCh
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKK---IQADIG-KKIG-LSTKSW-----QENSF 147 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---i~~~i~-~~~~-~~~~~~-----~~~~~ 147 (294)
..++||++++.+++..|... ...-+.++|++|+||||||..+..... +-..+. ..+. +..... .....
T Consensus 187 d~~iGr~~ei~~~i~~l~r~--~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~ 264 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR--RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEF 264 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC--CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHH
Confidence 45799999999999988876 445566999999999999987733210 000000 0000 000000 00111
Q ss_pred HHHHHHHHHHhc--cCCeEEEEccccCcc---------chhhhcCCcCCCCCC-cEEEEecCChHH--------hhccCC
Q 048597 148 EDKALDIAGILS--RKRFVLLLDDIWEHI---------NLNKLGVPLQYLHLG-SKIVFTTNSRVV--------CGQMEA 207 (294)
Q Consensus 148 ~~~~~~l~~~l~--~kr~LlvlDdv~~~~---------~~~~l~~~l~~~~~g-s~iivTtr~~~v--------~~~~~~ 207 (294)
+.....+.+.+. +++.+|++|+++... +...+..+. -.+| -++|-+|..... +-.-..
T Consensus 265 e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~--l~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf 342 (852)
T TIGR03345 265 ENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPA--LARGELRTIAATTWAEYKKYFEKDPALTRRF 342 (852)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHH--hhCCCeEEEEecCHHHHhhhhhccHHHHHhC
Confidence 122222333222 468999999997631 111222222 2223 456666654322 111123
Q ss_pred ceeecCCCCHHHHHHHHHHHhCCCCC-CCCCCHHHHHHHHHHhCCCCh
Q 048597 208 TMLNASPLRDEEAWRLFEEAVGRYVL-DSHPDIPELAKTMAEECCCLP 254 (294)
Q Consensus 208 ~~~~l~~L~~~~~~~Lf~~~~~~~~~-~~~~~~~~~~~~I~~~c~GlP 254 (294)
..+.+.+++.++...++......... ..-.--.+....+++.|.+.+
T Consensus 343 ~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 343 QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 34999999999999997543321110 011112344566777776543
No 73
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.36 E-value=1.3e-05 Score=76.67 Aligned_cols=179 Identities=16% Similarity=0.092 Sum_probs=105.7
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhCh-----hHH--------------HHHHHHHhCCC
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANL-----KKI--------------QADIGKKIGLS 138 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~-----~~i--------------~~~i~~~~~~~ 138 (294)
..++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.+... ... -..|.......
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~D 102 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVD 102 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCc
Confidence 468999999999999998762 2447899999999999999988211 100 01111111000
Q ss_pred C---CCcccCChHHHHHHHHHHh-----ccCCeEEEEccccCc--cchhhhcCCcCCCCCCcEEEEec-CChHHhhcc--
Q 048597 139 T---KSWQENSFEDKALDIAGIL-----SRKRFVLLLDDIWEH--INLNKLGVPLQYLHLGSKIVFTT-NSRVVCGQM-- 205 (294)
Q Consensus 139 ~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~~~-- 205 (294)
. ........++.. .+.+.+ .+++-++|+|+++.. ...+.+...+..-...+.+|++| ....+...+
T Consensus 103 v~e~~a~s~~gvd~IR-eIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~S 181 (598)
T PRK09111 103 VLEMDAASHTGVDDIR-EIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLS 181 (598)
T ss_pred eEEecccccCCHHHHH-HHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHh
Confidence 0 000112233322 232222 345668999999753 44566655554444456665555 333332211
Q ss_pred CCceeecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHH
Q 048597 206 EATMLNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVG 261 (294)
Q Consensus 206 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~ 261 (294)
.+..+++.+++.++....+.+.+........ .+....|++.++|.+.-+....
T Consensus 182 Rcq~~~f~~l~~~el~~~L~~i~~kegi~i~---~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 182 RCQRFDLRRIEADVLAAHLSRIAAKEGVEVE---DEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred heeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 2233999999999999988887754332222 2556889999999886665443
No 74
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.36 E-value=1.1e-05 Score=75.01 Aligned_cols=173 Identities=14% Similarity=0.127 Sum_probs=98.9
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChh---------------HHHHHHHHHhCCC---C
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLK---------------KIQADIGKKIGLS---T 139 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~---------------~i~~~i~~~~~~~---~ 139 (294)
..++|.+..+..+.+++..+. -...+.++|+.|+||||+|+.+.... ..-..+...-... .
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i 95 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEI 95 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEe
Confidence 468999999999999988651 23578899999999999998872111 0001111000000 0
Q ss_pred CCcccCChHHHHHHHHHHh-----ccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEecCC-hHHhhcc--CCce
Q 048597 140 KSWQENSFEDKALDIAGIL-----SRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTTNS-RVVCGQM--EATM 209 (294)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~--~~~~ 209 (294)
........++.. .+.+.+ .+.+-++|+|++.. ....+.+...+......+.+|++|.+ ..+...+ .+..
T Consensus 96 ~g~~~~gid~ir-~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~ 174 (451)
T PRK06305 96 DGASHRGIEDIR-QINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQK 174 (451)
T ss_pred eccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceE
Confidence 000111122222 222322 35677899999865 23444554454443335566666543 2222211 1223
Q ss_pred eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChH
Q 048597 210 LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPL 255 (294)
Q Consensus 210 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl 255 (294)
+++.++++++....+.+.+...+...+ .+....|++.++|.+-
T Consensus 175 v~f~~l~~~el~~~L~~~~~~eg~~i~---~~al~~L~~~s~gdlr 217 (451)
T PRK06305 175 MHLKRIPEETIIDKLALIAKQEGIETS---REALLPIARAAQGSLR 217 (451)
T ss_pred EeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHH
Confidence 999999999988888776643321121 3556889999999664
No 75
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=9.8e-06 Score=73.50 Aligned_cols=173 Identities=12% Similarity=0.107 Sum_probs=97.3
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHH----HHHhCCC---CCCcccCChHHH
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADI----GKKIGLS---TKSWQENSFEDK 150 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i----~~~~~~~---~~~~~~~~~~~~ 150 (294)
..++|.+...+.+.+.+..+. -.+.+.++|+.|+||||+|+.+.... .... ...+... .........++.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~l--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i 93 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARKI--NQPGYDDPNEDFSFNIFELDAASNNSVDDI 93 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHh--cCCCCCCCCCCCCcceEEeccccCCCHHHH
Confidence 457999999999999988751 34588899999999999998872211 0000 0000000 000011122232
Q ss_pred HHHHHHH----hccCCeEEEEccccCc--cchhhhcCCcCCCCCCcEEEEecCC-hHHhh-cc-CCceeecCCCCHHHHH
Q 048597 151 ALDIAGI----LSRKRFVLLLDDIWEH--INLNKLGVPLQYLHLGSKIVFTTNS-RVVCG-QM-EATMLNASPLRDEEAW 221 (294)
Q Consensus 151 ~~~l~~~----l~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~-~~-~~~~~~l~~L~~~~~~ 221 (294)
...+... ..+++-++++|++... ..++.+...+......+.+|++|.. ..+.. .. .+..+++.++++++..
T Consensus 94 ~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~ 173 (367)
T PRK14970 94 RNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIK 173 (367)
T ss_pred HHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHH
Confidence 2222211 1245668999998652 3455554444332334455555533 22211 11 1223899999999999
Q ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHH
Q 048597 222 RLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLA 256 (294)
Q Consensus 222 ~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla 256 (294)
..+.+.+...+...+ .+....+++.++|.+-.
T Consensus 174 ~~l~~~~~~~g~~i~---~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 174 EHLAGIAVKEGIKFE---DDALHIIAQKADGALRD 205 (367)
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHH
Confidence 888877654332222 25667888888886553
No 76
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.34 E-value=2.5e-05 Score=72.83 Aligned_cols=187 Identities=18% Similarity=0.172 Sum_probs=102.1
Q ss_pred eeehhH--HHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhH---------------HHHHHHHHhCCCCCCc
Q 048597 80 VIRQEL--LLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKK---------------IQADIGKKIGLSTKSW 142 (294)
Q Consensus 80 ~vGr~~--~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---------------i~~~i~~~~~~~~~~~ 142 (294)
++|... ....+..+..........+.|+|++|+|||+|++.+.+... ....+...+.
T Consensus 125 v~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~------ 198 (450)
T PRK00149 125 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALR------ 198 (450)
T ss_pred ccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHH------
Confidence 456443 23333333333222346799999999999999998854321 1111111110
Q ss_pred ccCChHHHHHHHHHHhccCCeEEEEccccCc---cch-hhhcCCcCC-CCCCcEEEEecCChH---------HhhccCCc
Q 048597 143 QENSFEDKALDIAGILSRKRFVLLLDDIWEH---INL-NKLGVPLQY-LHLGSKIVFTTNSRV---------VCGQMEAT 208 (294)
Q Consensus 143 ~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~---~~~-~~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~ 208 (294)
.... ..+.+.++ +.-+|+|||++.. ..+ +.+...|.. ...|..+++|+.... +...+...
T Consensus 199 -~~~~----~~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g 272 (450)
T PRK00149 199 -NNTM----EEFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWG 272 (450)
T ss_pred -cCcH----HHHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCC
Confidence 0011 12333333 3448999999652 111 222221211 112445777776431 23344444
Q ss_pred e-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHH----HHHH---HHcCCCCHHHHHHHHHHH
Q 048597 209 M-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALK----TVGR---AMRSISSIEEWEHAIKII 280 (294)
Q Consensus 209 ~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~----~i~~---~L~~~~~~~~w~~~l~~l 280 (294)
. +++++.+.++-..++.+.+.......+ .++...|++.+.|..-.+. .+.. .....-+....+.++..+
T Consensus 273 l~v~i~~pd~~~r~~il~~~~~~~~~~l~---~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 273 LTVDIEPPDLETRIAILKKKAEEEGIDLP---DEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred eeEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 4 999999999999999988754332222 3667889999888765433 2221 222225677788887766
Q ss_pred H
Q 048597 281 L 281 (294)
Q Consensus 281 ~ 281 (294)
-
T Consensus 350 ~ 350 (450)
T PRK00149 350 L 350 (450)
T ss_pred h
Confidence 3
No 77
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.33 E-value=7.9e-06 Score=69.46 Aligned_cols=176 Identities=18% Similarity=0.171 Sum_probs=104.0
Q ss_pred CceeehhHHHHHHHHHHhc---CCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHHHHHHH
Q 048597 78 RTVIRQELLLDRVWRFVTD---QERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFEDKALDI 154 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l 154 (294)
..|+|.++.++++.-++.. ....+--+.++||+|.||||||..+.+...+ .+..... ..-.-..+++..+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv------n~k~tsG-p~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGV------NLKITSG-PALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC------CeEeccc-ccccChhhHHHHH
Confidence 4689999988888777764 3446789999999999999999876442211 1111111 0111223333333
Q ss_pred HHHhccCCeEEEEccccCcc-c--------hhhhcCCc-CCCCCCc-----------EEEEecCChHHhhccCCc--e-e
Q 048597 155 AGILSRKRFVLLLDDIWEHI-N--------LNKLGVPL-QYLHLGS-----------KIVFTTNSRVVCGQMEAT--M-L 210 (294)
Q Consensus 155 ~~~l~~kr~LlvlDdv~~~~-~--------~~~l~~~l-~~~~~gs-----------~iivTtr~~~v~~~~~~~--~-~ 210 (294)
-. |+.. =++++|+++... . .+++..-. -..+.++ -|=.|||...+.+..... . .
T Consensus 99 t~-Le~~-DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~ 176 (332)
T COG2255 99 TN-LEEG-DVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQ 176 (332)
T ss_pred hc-CCcC-CeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCee
Confidence 32 3333 466789887621 1 11111000 0011222 234788876654433222 2 7
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHHHHHc
Q 048597 211 NASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVGRAMR 265 (294)
Q Consensus 211 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~~L~ 265 (294)
+++-.+.+|..++..+.+..-+.... .+-+.+|++...|-|--+.-+-+.++
T Consensus 177 rlefY~~~eL~~Iv~r~a~~l~i~i~---~~~a~eIA~rSRGTPRIAnRLLrRVR 228 (332)
T COG2255 177 RLEFYTVEELEEIVKRSAKILGIEID---EEAALEIARRSRGTPRIANRLLRRVR 228 (332)
T ss_pred eeecCCHHHHHHHHHHHHHHhCCCCC---hHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 78888999999999988744332232 25679999999999977666655544
No 78
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.33 E-value=1.7e-05 Score=64.90 Aligned_cols=156 Identities=19% Similarity=0.141 Sum_probs=87.3
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhH--------------HHHHHHHHh-----CCCCCCcccCChHH
Q 048597 89 RVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKK--------------IQADIGKKI-----GLSTKSWQENSFED 149 (294)
Q Consensus 89 ~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~--------------i~~~i~~~~-----~~~~~~~~~~~~~~ 149 (294)
.+.+.+..+ .-...+.++|+.|+||||+|+.+....- .-..+...- .+... ......++
T Consensus 3 ~l~~~i~~~-~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~-~~~~~~~~ 80 (188)
T TIGR00678 3 QLKRALEKG-RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE-GQSIKVDQ 80 (188)
T ss_pred HHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc-cCcCCHHH
Confidence 344555544 1236799999999999999988721110 001111000 00000 01122233
Q ss_pred HHHHHHHHh-----ccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEecCCh-HHhhcc--CCceeecCCCCHHH
Q 048597 150 KALDIAGIL-----SRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTTNSR-VVCGQM--EATMLNASPLRDEE 219 (294)
Q Consensus 150 ~~~~l~~~l-----~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~--~~~~~~l~~L~~~~ 219 (294)
.. .+.+.+ .+.+-++|+||+.. ....+.+...+......+.+|++|++. .+.... .+..+++.+++.++
T Consensus 81 i~-~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~ 159 (188)
T TIGR00678 81 VR-ELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEA 159 (188)
T ss_pred HH-HHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHH
Confidence 32 222322 35567899999976 334555655554444456676666543 221111 12239999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHH
Q 048597 220 AWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLA 256 (294)
Q Consensus 220 ~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla 256 (294)
....+.+. + .. .+.+..|++.++|.|..
T Consensus 160 ~~~~l~~~-g-----i~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 160 LLQWLIRQ-G-----IS---EEAAELLLALAGGSPGA 187 (188)
T ss_pred HHHHHHHc-C-----CC---HHHHHHHHHHcCCCccc
Confidence 98888776 1 11 35678999999998853
No 79
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.31 E-value=1.2e-05 Score=71.43 Aligned_cols=137 Identities=12% Similarity=0.075 Sum_probs=78.6
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHHHHHHHHHH
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFEDKALDIAGI 157 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (294)
..++|.+...+.+..++..+. -...+.++|++|+||||+|+.+++... . ..+.+.... .........+.++
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~~~--~---~~~~i~~~~---~~~~~i~~~l~~~ 91 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNEVG--A---EVLFVNGSD---CRIDFVRNRLTRF 91 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhC--c---cceEeccCc---ccHHHHHHHHHHH
Confidence 467999999999999988652 346777799999999999998854321 0 011111111 1122222223222
Q ss_pred h-----ccCCeEEEEccccCc---cchhhhcCCcCCCCCCcEEEEecCChHH-----hhccCCceeecCCCCHHHHHHHH
Q 048597 158 L-----SRKRFVLLLDDIWEH---INLNKLGVPLQYLHLGSKIVFTTNSRVV-----CGQMEATMLNASPLRDEEAWRLF 224 (294)
Q Consensus 158 l-----~~kr~LlvlDdv~~~---~~~~~l~~~l~~~~~gs~iivTtr~~~v-----~~~~~~~~~~l~~L~~~~~~~Lf 224 (294)
. .+.+-++++||+... .....+...+.....++++|+||..... ...+ ..+.+...+.++...++
T Consensus 92 ~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~--~~i~~~~p~~~~~~~il 169 (316)
T PHA02544 92 ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC--RVIDFGVPTKEEQIEMM 169 (316)
T ss_pred HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc--eEEEeCCCCHHHHHHHH
Confidence 2 235668999999753 1222233223333456788888865331 1212 23677777777776555
Q ss_pred H
Q 048597 225 E 225 (294)
Q Consensus 225 ~ 225 (294)
.
T Consensus 170 ~ 170 (316)
T PHA02544 170 K 170 (316)
T ss_pred H
Confidence 4
No 80
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=2.7e-05 Score=74.20 Aligned_cols=176 Identities=14% Similarity=0.094 Sum_probs=100.7
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhCh--------------hHHHHHHHHHhCCCCCCc-
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANL--------------KKIQADIGKKIGLSTKSW- 142 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~--------------~~i~~~i~~~~~~~~~~~- 142 (294)
..++|.+..+..+.+++..+. -.+.+.++|+.|+||||+|+.+... -..-..+........-..
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eid 94 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEID 94 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEee
Confidence 468999999999999988752 3456788999999999999888211 111111111111000000
Q ss_pred --ccCChHHHHHHHHHHh-----ccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEec-CChHHhhcc--CCcee
Q 048597 143 --QENSFEDKALDIAGIL-----SRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTT-NSRVVCGQM--EATML 210 (294)
Q Consensus 143 --~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~~~--~~~~~ 210 (294)
.....++. ..+.+.+ .++.-++++|+++. ...+..+...+........+|++| ....+...+ .+..+
T Consensus 95 aas~~~vd~i-r~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~ 173 (559)
T PRK05563 95 AASNNGVDEI-RDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRF 173 (559)
T ss_pred ccccCCHHHH-HHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEE
Confidence 11222222 2233322 35667889999975 345666655554333344445444 333332211 12338
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHH
Q 048597 211 NASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALK 258 (294)
Q Consensus 211 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 258 (294)
.+.+++.++....+...+...+.... .+....|++.++|.+..+.
T Consensus 174 ~f~~~~~~ei~~~L~~i~~~egi~i~---~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 174 DFKRISVEDIVERLKYILDKEGIEYE---DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 89999999988888876644332122 2456778888888775443
No 81
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.29 E-value=4.9e-05 Score=69.86 Aligned_cols=165 Identities=18% Similarity=0.166 Sum_probs=92.5
Q ss_pred ceEEEEEcCCCChHHHHHHHhhChhH---------------HHHHHHHHhCCCCCCcccCChHHHHHHHHHHhccCCeEE
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRANLKK---------------IQADIGKKIGLSTKSWQENSFEDKALDIAGILSRKRFVL 165 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~~~~~---------------i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~Ll 165 (294)
...+.|+|+.|+|||+|++.+.+... ....+...+. .... ..+.+.+.. .-+|
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~-------~~~~----~~~~~~~~~-~dlL 203 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALR-------NNKM----EEFKEKYRS-VDLL 203 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHH-------cCCH----HHHHHHHHh-CCEE
Confidence 45789999999999999998854221 1111111110 0011 122233322 3489
Q ss_pred EEccccCcc---ch-hhhcCCcCC-CCCCcEEEEecCChH---------HhhccCCce-eecCCCCHHHHHHHHHHHhCC
Q 048597 166 LLDDIWEHI---NL-NKLGVPLQY-LHLGSKIVFTTNSRV---------VCGQMEATM-LNASPLRDEEAWRLFEEAVGR 230 (294)
Q Consensus 166 vlDdv~~~~---~~-~~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~ 230 (294)
+|||++... .+ +.+...+.. ...|..+|+|+.... +...+.... +.+.+.+.++-..++.+.+..
T Consensus 204 iiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 204 LIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred EEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 999997521 11 122222211 123456777776421 223333333 889999999999999988855
Q ss_pred CCCCCCCCHHHHHHHHHHhCCCChHHHHH----HH---HHHcCCCCHHHHHHHHHHH
Q 048597 231 YVLDSHPDIPELAKTMAEECCCLPLALKT----VG---RAMRSISSIEEWEHAIKII 280 (294)
Q Consensus 231 ~~~~~~~~~~~~~~~I~~~c~GlPlai~~----i~---~~L~~~~~~~~w~~~l~~l 280 (294)
.....+ .++...|++.+.|.+-.+.- +. ......-+....+.++..+
T Consensus 284 ~~~~l~---~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 284 EGLELP---DEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDL 337 (405)
T ss_pred cCCCCC---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 432222 46778888888887654332 22 1222225667777777765
No 82
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=2.3e-05 Score=75.31 Aligned_cols=177 Identities=14% Similarity=0.116 Sum_probs=102.8
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChh---------------HHHHHHHHHhCCCC---
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLK---------------KIQADIGKKIGLST--- 139 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~---------------~i~~~i~~~~~~~~--- 139 (294)
..++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.+.... ..-..|........
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHEL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEe
Confidence 467999999999999998761 33568999999999999988762211 00011111100000
Q ss_pred CCcccCChHHHHHHHHHH----hccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEec-CChHHhhccC--Ccee
Q 048597 140 KSWQENSFEDKALDIAGI----LSRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTT-NSRVVCGQME--ATML 210 (294)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~~~~--~~~~ 210 (294)
........++....+... ..+++-++|+|++.. ...++.+...+..-...+.+|++| ....+..... +..+
T Consensus 96 d~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv 175 (614)
T PRK14971 96 DAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIF 175 (614)
T ss_pred cccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhhee
Confidence 000112233333322111 134566889999876 345666666555443455665544 4344332222 2339
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHH
Q 048597 211 NASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALK 258 (294)
Q Consensus 211 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 258 (294)
++.+++.++....+.+.+...+.... .+....|++.++|-.--+.
T Consensus 176 ~f~~ls~~ei~~~L~~ia~~egi~i~---~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 176 DFNRIQVADIVNHLQYVASKEGITAE---PEALNVIAQKADGGMRDAL 220 (614)
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 99999999999888877654432222 2456889999999665443
No 83
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=3e-05 Score=74.99 Aligned_cols=175 Identities=13% Similarity=0.110 Sum_probs=100.7
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChh---------HHHHHHHHHhCCCCC-----Ccc
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLK---------KIQADIGKKIGLSTK-----SWQ 143 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~---------~i~~~i~~~~~~~~~-----~~~ 143 (294)
..++|.+..+..|..++..+. -.+.+.++||.|+||||+|+.+.... ..........+.... ...
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaas 96 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAAS 96 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccc
Confidence 467999999999999998752 34567899999999999998882110 000000000111000 000
Q ss_pred cCChHHHHHHHHHHh-----ccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEE-EecCChHHhhc-c-CCceeecC
Q 048597 144 ENSFEDKALDIAGIL-----SRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIV-FTTNSRVVCGQ-M-EATMLNAS 213 (294)
Q Consensus 144 ~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~ii-vTtr~~~v~~~-~-~~~~~~l~ 213 (294)
....++ ...+.+.+ .+++-++|+|+++. ...+..+...+......+.+| +|+....+... . .+..+++.
T Consensus 97 n~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~ 175 (725)
T PRK07133 97 NNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFR 175 (725)
T ss_pred cCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEcc
Confidence 112222 22333333 35667999999875 345666655554333344444 44444444321 2 23349999
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHH
Q 048597 214 PLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLAL 257 (294)
Q Consensus 214 ~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 257 (294)
+++.++....+...+........ .+.+..|++.++|.+--+
T Consensus 176 ~L~~eeI~~~L~~il~kegI~id---~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 176 RISEDEIVSRLEFILEKENISYE---KNALKLIAKLSSGSLRDA 216 (725)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 99999998888876543321111 245678899998876433
No 84
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.26 E-value=3.7e-05 Score=70.13 Aligned_cols=193 Identities=13% Similarity=0.110 Sum_probs=103.1
Q ss_pred ceeehhHHHHHHHHHHhcC-----------CCCceEEEEEcCCCChHHHHHHHhhChhH-----HH-HHHHHHhCCCCCC
Q 048597 79 TVIRQELLLDRVWRFVTDQ-----------ERNRGIIGLYGTGGVGKTTLLKQRANLKK-----IQ-ADIGKKIGLSTKS 141 (294)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-----i~-~~i~~~~~~~~~~ 141 (294)
.+.|.+..+++|.+.+... -..++-+.++|++|+|||+||+.+.+... +. ..+....
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~------ 219 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKY------ 219 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHh------
Confidence 4778888888777766421 12467899999999999999999843221 10 0111100
Q ss_pred cccCChHHHHHHHHHHhccCCeEEEEccccCcc------------c----hhhhcCCcC--CCCCCcEEEEecCChHHhh
Q 048597 142 WQENSFEDKALDIAGILSRKRFVLLLDDIWEHI------------N----LNKLGVPLQ--YLHLGSKIVFTTNSRVVCG 203 (294)
Q Consensus 142 ~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~------------~----~~~l~~~l~--~~~~gs~iivTtr~~~v~~ 203 (294)
.......+...+.......+.+|++|++.... . +..+...+. ....+..+|+||.......
T Consensus 220 -~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LD 298 (398)
T PTZ00454 220 -LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD 298 (398)
T ss_pred -cchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCC
Confidence 01111222222222334678999999976410 0 111111111 1223556788887544321
Q ss_pred --cc---CCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHH----HHHHHHH--HcCC---C
Q 048597 204 --QM---EATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLA----LKTVGRA--MRSI---S 268 (294)
Q Consensus 204 --~~---~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla----i~~i~~~--L~~~---~ 268 (294)
.. .... +++...+.++...+|.............++ .++++.+.|+.-| +..-|++ ++.. -
T Consensus 299 pAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~----~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i 374 (398)
T PTZ00454 299 PALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDL----EDFVSRPEKISAADIAAICQEAGMQAVRKNRYVI 374 (398)
T ss_pred HHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCH----HHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 11 2233 888888998888888866643332222333 4556666665432 2222332 2222 3
Q ss_pred CHHHHHHHHHHHHh
Q 048597 269 SIEEWEHAIKIILR 282 (294)
Q Consensus 269 ~~~~w~~~l~~l~~ 282 (294)
+.++++.++.....
T Consensus 375 ~~~df~~A~~~v~~ 388 (398)
T PTZ00454 375 LPKDFEKGYKTVVR 388 (398)
T ss_pred CHHHHHHHHHHHHh
Confidence 46677777776544
No 85
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=4.8e-05 Score=72.39 Aligned_cols=177 Identities=15% Similarity=0.108 Sum_probs=103.9
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhH--------------HHHHHHHHhCCC---CC
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKK--------------IQADIGKKIGLS---TK 140 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~--------------i~~~i~~~~~~~---~~ 140 (294)
..++|.+..+..|..++..+. -.+.+.++|+.|+||||+|+.+....- .-..+...-... ..
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~id 94 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEID 94 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEec
Confidence 468999999999999998752 345789999999999999988722110 011111110000 00
Q ss_pred CcccCChHHHHHHHHHH-----hccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEecCC-hHHhhc-c-CCcee
Q 048597 141 SWQENSFEDKALDIAGI-----LSRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTTNS-RVVCGQ-M-EATML 210 (294)
Q Consensus 141 ~~~~~~~~~~~~~l~~~-----l~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~-~-~~~~~ 210 (294)
.......++... +.+. ..+++-++|+|+++. ...++.+...+......+.+|++|.. ..+... . .+..+
T Consensus 95 gas~~~vddIr~-l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~ 173 (563)
T PRK06647 95 GASNTSVQDVRQ-IKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHF 173 (563)
T ss_pred CcccCCHHHHHH-HHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEE
Confidence 001122333322 2211 235667899999876 34566666666544445566655543 333221 1 12238
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHH
Q 048597 211 NASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKT 259 (294)
Q Consensus 211 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 259 (294)
++.+++.++....+.+.+....... -.+....|++.++|.+-.+..
T Consensus 174 ~f~~l~~~el~~~L~~i~~~egi~i---d~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 174 NFRLLSLEKIYNMLKKVCLEDQIKY---EDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred EecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 9999999998888887664433222 135567788999997754433
No 86
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.24 E-value=1.4e-05 Score=73.00 Aligned_cols=127 Identities=20% Similarity=0.136 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHH-hCCCCCCcccCChHHHHHHHHHHh---cc
Q 048597 85 LLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKK-IGLSTKSWQENSFEDKALDIAGIL---SR 160 (294)
Q Consensus 85 ~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~-~~~~~~~~~~~~~~~~~~~l~~~l---~~ 160 (294)
.-..++.+.+... . .++.|.||.++|||||++.+ .+..... +.....+ ...+...+.+.+.... ..
T Consensus 24 ~~~~~l~~~~~~~--~-~i~~i~GpR~~GKTtll~~l------~~~~~~~~iy~~~~d-~~~~~~~l~d~~~~~~~~~~~ 93 (398)
T COG1373 24 KLLPRLIKKLDLR--P-FIILILGPRQVGKTTLLKLL------IKGLLEEIIYINFDD-LRLDRIELLDLLRAYIELKER 93 (398)
T ss_pred hhhHHHHhhcccC--C-cEEEEECCccccHHHHHHHH------HhhCCcceEEEEecc-hhcchhhHHHHHHHHHHhhcc
Confidence 3444555554444 2 29999999999999998443 1111111 1111111 0111122222222222 23
Q ss_pred CCeEEEEccccCccchhhhcCCcCCCCCCcEEEEecCChHH-----hhcc-CCce-eecCCCCHHHHHH
Q 048597 161 KRFVLLLDDIWEHINLNKLGVPLQYLHLGSKIVFTTNSRVV-----CGQM-EATM-LNASPLRDEEAWR 222 (294)
Q Consensus 161 kr~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v-----~~~~-~~~~-~~l~~L~~~~~~~ 222 (294)
++..++||+|.....|......+.+..+. ++++|+.+... +... +-.. +++-|||-.+-..
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 67899999999999999887777766555 78888877554 2222 2223 9999999888764
No 87
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.24 E-value=6.1e-05 Score=65.23 Aligned_cols=179 Identities=16% Similarity=0.120 Sum_probs=102.4
Q ss_pred Cceeehh---HHHHHHHHHHhcCC-CCceEEEEEcCCCChHHHHHHHh-------------------------hChhHHH
Q 048597 78 RTVIRQE---LLLDRVWRFVTDQE-RNRGIIGLYGTGGVGKTTLLKQR-------------------------ANLKKIQ 128 (294)
Q Consensus 78 ~~~vGr~---~~~~~l~~~L~~~~-~~~~vi~I~G~~GiGKTtLa~~v-------------------------~~~~~i~ 128 (294)
+..||.. ..++.+.+++..+. ...+.+.|+|.+|.|||++++.. ++..++.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y 113 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFY 113 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHH
Confidence 4556654 34555555555542 35678999999999999999998 5666788
Q ss_pred HHHHHHhCCCCCCcccCChHHHHHHHHHHhc-cCCeEEEEccccCcc--------chhhhcCCcCCCCCCcEEEEecCCh
Q 048597 129 ADIGKKIGLSTKSWQENSFEDKALDIAGILS-RKRFVLLLDDIWEHI--------NLNKLGVPLQYLHLGSKIVFTTNSR 199 (294)
Q Consensus 129 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlvlDdv~~~~--------~~~~l~~~l~~~~~gs~iivTtr~~ 199 (294)
..|+..++.+... ......+.......++ -+--+||+|++++.- ..-.+...+...-.=+-|.+.|+..
T Consensus 114 ~~IL~~lgaP~~~--~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A 191 (302)
T PF05621_consen 114 SAILEALGAPYRP--RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREA 191 (302)
T ss_pred HHHHHHhCcccCC--CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHH
Confidence 8999999876542 3344444444445554 345589999998721 1111112222222223445555433
Q ss_pred HH--------hhccCCceeecCCCCH-HHHHHHHHHHh--CCCCCCCCCCHHHHHHHHHHhCCCChHHHHHH
Q 048597 200 VV--------CGQMEATMLNASPLRD-EEAWRLFEEAV--GRYVLDSHPDIPELAKTMAEECCCLPLALKTV 260 (294)
Q Consensus 200 ~v--------~~~~~~~~~~l~~L~~-~~~~~Lf~~~~--~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i 260 (294)
.- ++.... +.+..... ++...|+..-. ..-...+.-...++++.|...|+|+.=-+..+
T Consensus 192 ~~al~~D~QLa~RF~~--~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 192 YRALRTDPQLASRFEP--FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred HHHhccCHHHHhccCC--ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 22 222222 44444432 34445543321 11121233345688999999999998555443
No 88
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=4.8e-05 Score=73.21 Aligned_cols=178 Identities=13% Similarity=0.088 Sum_probs=102.4
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChh----------------HHHHHHHHHhCCCC--
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLK----------------KIQADIGKKIGLST-- 139 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~----------------~i~~~i~~~~~~~~-- 139 (294)
..++|.+.....|..++..+. -...+.++|+.|+||||+|+.+.... ...+.+........
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~e 94 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIE 94 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEE
Confidence 457899999999999888752 23578899999999999999882211 11111211111100
Q ss_pred -CCcccCChHHHHHHHHHHh-----ccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEecCC-hHHhhcc--CCc
Q 048597 140 -KSWQENSFEDKALDIAGIL-----SRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTTNS-RVVCGQM--EAT 208 (294)
Q Consensus 140 -~~~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~--~~~ 208 (294)
........+...+.+ +.+ .+++-++|+|+++. ...++.+...+......+.+|++|.+ ..+...+ .+.
T Consensus 95 i~~~~~~~vd~IReii-~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~ 173 (620)
T PRK14948 95 IDAASNTGVDNIRELI-ERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQ 173 (620)
T ss_pred EeccccCCHHHHHHHH-HHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhhee
Confidence 000112232332222 222 25566899999976 34566665555443334555555543 2232211 223
Q ss_pred eeecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHH
Q 048597 209 MLNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTV 260 (294)
Q Consensus 209 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i 260 (294)
.+++.+++.++....+...+........ .+....|++.++|.+..+..+
T Consensus 174 ~~~f~~l~~~ei~~~L~~ia~kegi~is---~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 174 RFDFRRIPLEAMVQHLSEIAEKESIEIE---PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred EEEecCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 3888899998888877766644321222 245688999999987655443
No 89
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=2.2e-05 Score=75.08 Aligned_cols=178 Identities=12% Similarity=0.069 Sum_probs=100.4
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChh--------------HHHHHHHHHhCCCC---C
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLK--------------KIQADIGKKIGLST---K 140 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~--------------~i~~~i~~~~~~~~---~ 140 (294)
..++|.+..+..|.+++..+. -...+.++|+.|+||||+|+.+.... ..-..|...-.... .
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid 94 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEID 94 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeee
Confidence 468999999999999988761 23567899999999999998872211 11111111110000 0
Q ss_pred CcccCChHHHHHHHHHHh-----ccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEec-CChHHhhccC--Ccee
Q 048597 141 SWQENSFEDKALDIAGIL-----SRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTT-NSRVVCGQME--ATML 210 (294)
Q Consensus 141 ~~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~~~~--~~~~ 210 (294)
.......++. ..+.+.+ .+++-++|+|+++. ....+.+...+......+.+|++| ....+..... +..+
T Consensus 95 ~~s~~~v~~i-r~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~ 173 (576)
T PRK14965 95 GASNTGVDDI-RELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRF 173 (576)
T ss_pred ccCccCHHHH-HHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhh
Confidence 0011122222 2333333 34556899999975 344555655554333345555444 4444432221 2238
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCCh-HHHHHH
Q 048597 211 NASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLP-LALKTV 260 (294)
Q Consensus 211 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-lai~~i 260 (294)
++.+++.++....+...+...+.... .+....|++.++|.. .++..+
T Consensus 174 ~f~~l~~~~i~~~L~~i~~~egi~i~---~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 174 DFRRIPLQKIVDRLRYIADQEGISIS---DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred hcCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 89999999888877766543331111 245677888888865 344443
No 90
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.22 E-value=3.3e-06 Score=83.19 Aligned_cols=146 Identities=18% Similarity=0.218 Sum_probs=80.9
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhH---HHHHH-HHHhC-CCC-----CCcccCCh
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKK---IQADI-GKKIG-LST-----KSWQENSF 147 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---i~~~i-~~~~~-~~~-----~~~~~~~~ 147 (294)
+.++||++++++++..|... ...-+.++|++|+|||++|+.+..... +-..+ ...++ +.. ........
T Consensus 182 ~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~ 259 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDF 259 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchH
Confidence 35899999999999988776 445567999999999999987733210 00000 00000 000 00001122
Q ss_pred HHHHHHHHHHh-ccCCeEEEEccccCcc----------chhhh-cCCcCCCCCC-cEEEEecCChHH--------hhccC
Q 048597 148 EDKALDIAGIL-SRKRFVLLLDDIWEHI----------NLNKL-GVPLQYLHLG-SKIVFTTNSRVV--------CGQME 206 (294)
Q Consensus 148 ~~~~~~l~~~l-~~kr~LlvlDdv~~~~----------~~~~l-~~~l~~~~~g-s~iivTtr~~~v--------~~~~~ 206 (294)
+.....+.+.+ ..++.+|++|+++... +...+ ...+. .| -++|-+|...+. +-.-.
T Consensus 260 e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~IgaTt~~e~~~~~~~d~al~rR 336 (731)
T TIGR02639 260 EERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRCIGSTTYEEYKNHFEKDRALSRR 336 (731)
T ss_pred HHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEEEEecCHHHHHHHhhhhHHHHHh
Confidence 23333333333 3467899999997421 11222 22222 23 345555543221 11112
Q ss_pred CceeecCCCCHHHHHHHHHHHh
Q 048597 207 ATMLNASPLRDEEAWRLFEEAV 228 (294)
Q Consensus 207 ~~~~~l~~L~~~~~~~Lf~~~~ 228 (294)
...+++.+++.++..+++....
T Consensus 337 f~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 337 FQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred CceEEeCCCCHHHHHHHHHHHH
Confidence 2349999999999999998654
No 91
>PF14516 AAA_35: AAA-like domain
Probab=98.21 E-value=0.00015 Score=64.87 Aligned_cols=181 Identities=14% Similarity=0.144 Sum_probs=104.8
Q ss_pred cCceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHh------------------------hChhHHHH---
Q 048597 77 ERTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR------------------------ANLKKIQA--- 129 (294)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v------------------------~~~~~i~~--- 129 (294)
.+..|.|...-+++.+.+... -..+.|.|+..+|||||+..+ .+..+..+
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~ 86 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFC 86 (331)
T ss_pred CCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHH
Confidence 456789986777777777763 379999999999999999888 12222333
Q ss_pred -HHHHHhCCCCCC---c--ccCChHHHHHHHHHHh---ccCCeEEEEccccCccc---h-hhhcCCc----CCCC----C
Q 048597 130 -DIGKKIGLSTKS---W--QENSFEDKALDIAGIL---SRKRFVLLLDDIWEHIN---L-NKLGVPL----QYLH----L 188 (294)
Q Consensus 130 -~i~~~~~~~~~~---~--~~~~~~~~~~~l~~~l---~~kr~LlvlDdv~~~~~---~-~~l~~~l----~~~~----~ 188 (294)
.+..++++...- + ...+.......+.+.+ .+++.+|+||++..... + +++...+ .... .
T Consensus 87 ~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~ 166 (331)
T PF14516_consen 87 EEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIW 166 (331)
T ss_pred HHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCccc
Confidence 334444432210 0 0112223333344433 26899999999975211 1 1111111 1000 1
Q ss_pred Cc--EEEEecCChHHh-----hccCCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHH
Q 048597 189 GS--KIVFTTNSRVVC-----GQMEATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTV 260 (294)
Q Consensus 189 gs--~iivTtr~~~v~-----~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i 260 (294)
.+ -|++.+...... ...+... +.|.+++.++...|+.+.-.. ..+ ...++|...+||+|.-+..+
T Consensus 167 ~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~----~~~---~~~~~l~~~tgGhP~Lv~~~ 239 (331)
T PF14516_consen 167 QKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE----FSQ---EQLEQLMDWTGGHPYLVQKA 239 (331)
T ss_pred ceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc----CCH---HHHHHHHHHHCCCHHHHHHH
Confidence 11 122222111111 1112223 899999999999998775322 111 22789999999999999999
Q ss_pred HHHHcCC
Q 048597 261 GRAMRSI 267 (294)
Q Consensus 261 ~~~L~~~ 267 (294)
+..+..+
T Consensus 240 ~~~l~~~ 246 (331)
T PF14516_consen 240 CYLLVEE 246 (331)
T ss_pred HHHHHHc
Confidence 9999763
No 92
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.20 E-value=8.5e-06 Score=81.26 Aligned_cols=145 Identities=17% Similarity=0.183 Sum_probs=79.2
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhH---HHHHHH-HHhC-C------CCCCcccCC
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKK---IQADIG-KKIG-L------STKSWQENS 146 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---i~~~i~-~~~~-~------~~~~~~~~~ 146 (294)
..++||+++++++++.|... ...-+.++|++|+|||++|..+..... +-..+. ..++ + ....+ ...
T Consensus 179 ~~~igr~~ei~~~~~~L~r~--~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~-~ge 255 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR--TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKY-RGE 255 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc--ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCC-ccH
Confidence 35799999999999999876 344557999999999999988732210 000000 0000 0 00000 111
Q ss_pred hHHHHHHHHHHh-ccCCeEEEEccccCcc---------chhhhcCCcCCCCCCcEEEEecCChHHhh--------ccCCc
Q 048597 147 FEDKALDIAGIL-SRKRFVLLLDDIWEHI---------NLNKLGVPLQYLHLGSKIVFTTNSRVVCG--------QMEAT 208 (294)
Q Consensus 147 ~~~~~~~l~~~l-~~kr~LlvlDdv~~~~---------~~~~l~~~l~~~~~gs~iivTtr~~~v~~--------~~~~~ 208 (294)
.++....+.+.+ ..++.+|++|+++... +...+..+....+ .-++|.+|....... .....
T Consensus 256 ~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ey~~~ie~D~aL~rRf~ 334 (821)
T CHL00095 256 FEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDEYRKHIEKDPALERRFQ 334 (821)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHHHHHHHhcCHHHHhcce
Confidence 222333333333 3567899999997421 1222322221111 235666665544311 11222
Q ss_pred eeecCCCCHHHHHHHHHH
Q 048597 209 MLNASPLRDEEAWRLFEE 226 (294)
Q Consensus 209 ~~~l~~L~~~~~~~Lf~~ 226 (294)
.+.+...+.++...++..
T Consensus 335 ~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 335 PVYVGEPSVEETIEILFG 352 (821)
T ss_pred EEecCCCCHHHHHHHHHH
Confidence 378888898888888764
No 93
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.19 E-value=4.7e-05 Score=70.55 Aligned_cols=166 Identities=18% Similarity=0.166 Sum_probs=91.3
Q ss_pred ceEEEEEcCCCChHHHHHHHhhChh---------------HHHHHHHHHhCCCCCCcccCChHHHHHHHHHHhccCCeEE
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRANLK---------------KIQADIGKKIGLSTKSWQENSFEDKALDIAGILSRKRFVL 165 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~~~~---------------~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~Ll 165 (294)
...+.|+|++|+|||+|++.+.+.. +....+...+. .... ..+.+....+.-+|
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~-------~~~~----~~f~~~~~~~~dvL 198 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMK-------EGKL----NEFREKYRKKVDVL 198 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHh-------cccH----HHHHHHHHhcCCEE
Confidence 4569999999999999999885431 11111211111 0011 12333333345689
Q ss_pred EEccccCc---cch-hhhcCCcCC-CCCCcEEEEecCC-hH--------HhhccCCce-eecCCCCHHHHHHHHHHHhCC
Q 048597 166 LLDDIWEH---INL-NKLGVPLQY-LHLGSKIVFTTNS-RV--------VCGQMEATM-LNASPLRDEEAWRLFEEAVGR 230 (294)
Q Consensus 166 vlDdv~~~---~~~-~~l~~~l~~-~~~gs~iivTtr~-~~--------v~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~ 230 (294)
++||+... ..+ ..+...+.. ...|..+|+||.. .. +...+.... +.+++.+.+.-..++++.+..
T Consensus 199 lIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~ 278 (440)
T PRK14088 199 LIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEI 278 (440)
T ss_pred EEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHh
Confidence 99999742 111 122222211 1224468888753 22 122233333 889999999999999988754
Q ss_pred CCCCCCCCHHHHHHHHHHhCCCChHHHHHHH-------HHHcCCCCHHHHHHHHHHH
Q 048597 231 YVLDSHPDIPELAKTMAEECCCLPLALKTVG-------RAMRSISSIEEWEHAIKII 280 (294)
Q Consensus 231 ~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~-------~~L~~~~~~~~w~~~l~~l 280 (294)
.....+ .++...|++.+.|..-.+.-+- .+....-+...-+.++..+
T Consensus 279 ~~~~l~---~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 279 EHGELP---EEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred cCCCCC---HHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 332222 3667888888887543322211 1122224566666666655
No 94
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=9.3e-05 Score=69.32 Aligned_cols=179 Identities=15% Similarity=0.070 Sum_probs=100.6
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhH----H-----HHHH-HHHhCC-CCCC-----
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKK----I-----QADI-GKKIGL-STKS----- 141 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~----i-----~~~i-~~~~~~-~~~~----- 141 (294)
..++|.+..+..+.+++..+. -.+.+.++|+.|+||||+|+.+..... . -.+. ...+.. ...+
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eid 94 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEID 94 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEe
Confidence 457899999999999998752 345677899999999999988722110 0 0000 000000 0000
Q ss_pred -cccCChHHHHHHHHHHh-----ccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEec-CChHHhhc-c-CCcee
Q 048597 142 -WQENSFEDKALDIAGIL-----SRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTT-NSRVVCGQ-M-EATML 210 (294)
Q Consensus 142 -~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~~-~-~~~~~ 210 (294)
......++ ...+.+.+ .+++-++|+|+++. ....+.+...+........+|++| +...+... . .+..+
T Consensus 95 aas~~gvd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i 173 (486)
T PRK14953 95 AASNRGIDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRF 173 (486)
T ss_pred CccCCCHHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEE
Confidence 01112222 22333333 35667999999875 334555544444333344555444 33333211 1 22348
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHH
Q 048597 211 NASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVG 261 (294)
Q Consensus 211 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~ 261 (294)
++.+++.++....+.+.+........ .+....|++.++|.+..+..+.
T Consensus 174 ~f~~ls~~el~~~L~~i~k~egi~id---~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 174 IFSKPTKEQIKEYLKRICNEEKIEYE---EKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999988888876644332222 2456778888999776444433
No 95
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.19 E-value=3.9e-05 Score=67.03 Aligned_cols=142 Identities=11% Similarity=0.087 Sum_probs=74.6
Q ss_pred ceeehhHHHHHHHHHHh---cC----------CCCceEEEEEcCCCChHHHHHHHhhChhH------------HH-HHHH
Q 048597 79 TVIRQELLLDRVWRFVT---DQ----------ERNRGIIGLYGTGGVGKTTLLKQRANLKK------------IQ-ADIG 132 (294)
Q Consensus 79 ~~vGr~~~~~~l~~~L~---~~----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~------------i~-~~i~ 132 (294)
.++|.+..+++|.++.. .. .....-+.++|++|+||||+|+.+..... +. ..+.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 46887766666544322 11 01223688999999999999976632111 00 0111
Q ss_pred HHhCCCCCCcccCChHHHHHHHHHHhccCCeEEEEccccCc-----------cchhhhcCCcCCCCCCcEEEEecCChHH
Q 048597 133 KKIGLSTKSWQENSFEDKALDIAGILSRKRFVLLLDDIWEH-----------INLNKLGVPLQYLHLGSKIVFTTNSRVV 201 (294)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~-----------~~~~~l~~~l~~~~~gs~iivTtr~~~v 201 (294)
..+ ...+.......+.+ -..-+|+||++... +.+..+...+.....+.+||+++.....
T Consensus 103 ~~~-------~g~~~~~~~~~~~~---a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~ 172 (284)
T TIGR02880 103 GQY-------IGHTAPKTKEILKR---AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRM 172 (284)
T ss_pred Hhh-------cccchHHHHHHHHH---ccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHH
Confidence 110 01111111111221 23368999999631 1223333333334445567777654322
Q ss_pred hhcc--C-------CceeecCCCCHHHHHHHHHHHhCC
Q 048597 202 CGQM--E-------ATMLNASPLRDEEAWRLFEEAVGR 230 (294)
Q Consensus 202 ~~~~--~-------~~~~~l~~L~~~~~~~Lf~~~~~~ 230 (294)
-... . ...+++.+++.++...++...+..
T Consensus 173 ~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 173 DSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred HHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 1111 1 223999999999999999887744
No 96
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.19 E-value=4.3e-05 Score=72.09 Aligned_cols=193 Identities=15% Similarity=0.086 Sum_probs=100.9
Q ss_pred CceeehhHHHHHHHHHHh---cC-------CCCceEEEEEcCCCChHHHHHHHhhChhHH-----H-HHHHHHhCCCCCC
Q 048597 78 RTVIRQELLLDRVWRFVT---DQ-------ERNRGIIGLYGTGGVGKTTLLKQRANLKKI-----Q-ADIGKKIGLSTKS 141 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~---~~-------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i-----~-~~i~~~~~~~~~~ 141 (294)
..++|.+..++++.+++. .. ....+-+.++||+|+|||+||+.+.+...+ . ..+....
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~------ 128 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF------ 128 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHH------
Confidence 457888776665555443 21 123456899999999999999998432110 0 0010000
Q ss_pred cccCChHHHHHHHHHHhccCCeEEEEccccCcc------------chhh----hcCCcC--CCCCCcEEEEecCChHH--
Q 048597 142 WQENSFEDKALDIAGILSRKRFVLLLDDIWEHI------------NLNK----LGVPLQ--YLHLGSKIVFTTNSRVV-- 201 (294)
Q Consensus 142 ~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~------------~~~~----l~~~l~--~~~~gs~iivTtr~~~v-- 201 (294)
.......+...+.......+++|+|||++... .+.. +...+. ....+..||.||.....
T Consensus 129 -~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld 207 (495)
T TIGR01241 129 -VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLD 207 (495)
T ss_pred -hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcC
Confidence 01112223333333334667999999996521 1111 111111 12234456666655432
Q ss_pred ---hhccCCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCCh-HHHHHHHH---H--HcCC---C
Q 048597 202 ---CGQMEATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLP-LALKTVGR---A--MRSI---S 268 (294)
Q Consensus 202 ---~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-lai~~i~~---~--L~~~---~ 268 (294)
........ +++...+.++-.++|...+.........+ ...+++.+.|.- -.+..+.. + .+.+ -
T Consensus 208 ~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~----l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i 283 (495)
T TIGR01241 208 PALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVD----LKAVARRTPGFSGADLANLLNEAALLAARKNKTEI 283 (495)
T ss_pred HHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchh----HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 11122334 88999999888888887764432121112 357888888744 33333332 1 1211 3
Q ss_pred CHHHHHHHHHHHH
Q 048597 269 SIEEWEHAIKIIL 281 (294)
Q Consensus 269 ~~~~w~~~l~~l~ 281 (294)
+.++.+.+++...
T Consensus 284 ~~~~l~~a~~~~~ 296 (495)
T TIGR01241 284 TMNDIEEAIDRVI 296 (495)
T ss_pred CHHHHHHHHHHHh
Confidence 5677777766654
No 97
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.17 E-value=1.5e-06 Score=70.62 Aligned_cols=43 Identities=26% Similarity=0.377 Sum_probs=29.5
Q ss_pred ceeehhHHHHHHHHHHhc-CCCCceEEEEEcCCCChHHHHHHHh
Q 048597 79 TVIRQELLLDRVWRFVTD-QERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~-~~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.|+||+++++++...|.. .+...+.+.|+|++|+|||+|++.+
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~ 44 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRAL 44 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHH
Confidence 379999999999999942 2346799999999999999999977
No 98
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.16 E-value=3.2e-05 Score=74.17 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=38.3
Q ss_pred CceeehhHHHHHHHHHHhcCC---CCceEEEEEcCCCChHHHHHHHhhCh
Q 048597 78 RTVIRQELLLDRVWRFVTDQE---RNRGIIGLYGTGGVGKTTLLKQRANL 124 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~---~~~~vi~I~G~~GiGKTtLa~~v~~~ 124 (294)
..++|.++.++++..++.... ....++.|+|++|+||||+++.+...
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999987632 23467999999999999999999543
No 99
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.16 E-value=0.0001 Score=71.26 Aligned_cols=182 Identities=20% Similarity=0.170 Sum_probs=111.3
Q ss_pred cCceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHh-------------------hChhHHHHHHHHHhCC
Q 048597 77 ERTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR-------------------ANLKKIQADIGKKIGL 137 (294)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v-------------------~~~~~i~~~i~~~~~~ 137 (294)
....|-|. ++++.|... .+.+.+.|.-|+|.|||||+.+. -+..+....++..++-
T Consensus 18 ~~~~v~R~----rL~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~ 92 (894)
T COG2909 18 PDNYVVRP----RLLDRLRRA-NDYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQ 92 (894)
T ss_pred cccccccH----HHHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHH
Confidence 34456565 455555543 26799999999999999999887 2233455555555542
Q ss_pred CCCC-----------cccCChHHHHHHHHHHhc--cCCeEEEEccccCc--cchh-hhcCCcCCCCCCcEEEEecCChHH
Q 048597 138 STKS-----------WQENSFEDKALDIAGILS--RKRFVLLLDDIWEH--INLN-KLGVPLQYLHLGSKIVFTTNSRVV 201 (294)
Q Consensus 138 ~~~~-----------~~~~~~~~~~~~l~~~l~--~kr~LlvlDdv~~~--~~~~-~l~~~l~~~~~gs~iivTtr~~~v 201 (294)
..+. .+..+...+...+...+. .+++.+||||.+-. ..+. .+...+.....+-.+++|||+..-
T Consensus 93 ~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 93 ATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred hCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 1111 112334445555555553 56899999998752 2222 222222333346789999998764
Q ss_pred hhccC--Cce--eecC----CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHHHHHcCCCC
Q 048597 202 CGQME--ATM--LNAS----PLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVGRAMRSISS 269 (294)
Q Consensus 202 ~~~~~--~~~--~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~~L~~~~~ 269 (294)
..... ... ++++ .|+.+|+-++|.......- -..-.+.+.+..+|=+-|+..++=.++.+.+
T Consensus 173 l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L------d~~~~~~L~~~teGW~~al~L~aLa~~~~~~ 242 (894)
T COG2909 173 LGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL------DAADLKALYDRTEGWAAALQLIALALRNNTS 242 (894)
T ss_pred CcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC------ChHHHHHHHhhcccHHHHHHHHHHHccCCCc
Confidence 33211 111 3332 3789999999987653321 1234688999999999999999888874333
No 100
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=0.00013 Score=64.89 Aligned_cols=153 Identities=12% Similarity=0.052 Sum_probs=88.1
Q ss_pred CceEEEEEcCCCChHHHHHHHh-----hChh---------HHHHHHHHHhC-----CCCCC-cccCChHHHHHHHHHHh-
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR-----ANLK---------KIQADIGKKIG-----LSTKS-WQENSFEDKALDIAGIL- 158 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v-----~~~~---------~i~~~i~~~~~-----~~~~~-~~~~~~~~~~~~l~~~l- 158 (294)
-...+.++|+.|+||||+|..+ +... ..-+.|...-. +.... ......++..+ +.+.+
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~-l~~~~~ 99 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRE-LVSFVV 99 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHH-HHHHHh
Confidence 4567999999999999999887 1110 01111111100 00000 01123333332 33333
Q ss_pred ----ccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEecCChHH-hhc--cCCceeecCCCCHHHHHHHHHHHhC
Q 048597 159 ----SRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTTNSRVV-CGQ--MEATMLNASPLRDEEAWRLFEEAVG 229 (294)
Q Consensus 159 ----~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTtr~~~v-~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~ 229 (294)
.+++-++|+|+++. ....+.+...+.....++.+|++|.+... ... ..+..+++.+++.+++.+.+.....
T Consensus 100 ~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~ 179 (328)
T PRK05707 100 QTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALP 179 (328)
T ss_pred hccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcc
Confidence 34555678899976 45566665566544456777777776543 211 1233499999999999988876531
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCCChHHHHHH
Q 048597 230 RYVLDSHPDIPELAKTMAEECCCLPLALKTV 260 (294)
Q Consensus 230 ~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i 260 (294)
.. ..+.+..++..++|.|+.+..+
T Consensus 180 ~~-------~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 180 ES-------DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred cC-------ChHHHHHHHHHcCCCHHHHHHH
Confidence 11 1233567789999999866544
No 101
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.12 E-value=8.6e-06 Score=81.32 Aligned_cols=147 Identities=14% Similarity=0.202 Sum_probs=78.9
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChh---HHHHHHH-HHh-CC--C----CCCcccCC
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLK---KIQADIG-KKI-GL--S----TKSWQENS 146 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~---~i~~~i~-~~~-~~--~----~~~~~~~~ 146 (294)
..++||+.++.+++..|... ....+.++|++|+||||||..+.... .+-..+. ..+ .+ . ...+. ..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~-g~ 254 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYR-GE 254 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC--CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchh-hh
Confidence 35899999999999999876 44566699999999999998773211 0000000 000 00 0 00000 11
Q ss_pred hHHHHHHHHHHh--ccCCeEEEEccccCcc---------chhhhcCCcCCCCCCcEEEEecCChHH--------hhccCC
Q 048597 147 FEDKALDIAGIL--SRKRFVLLLDDIWEHI---------NLNKLGVPLQYLHLGSKIVFTTNSRVV--------CGQMEA 207 (294)
Q Consensus 147 ~~~~~~~l~~~l--~~kr~LlvlDdv~~~~---------~~~~l~~~l~~~~~gs~iivTtr~~~v--------~~~~~~ 207 (294)
.+.....+.+.+ .+++.+|++|+++... +...+..+....+ .-++|-+|..... +-.-..
T Consensus 255 ~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g-~l~~IgaTt~~e~r~~~~~d~al~rRf 333 (857)
T PRK10865 255 FEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG-ELHCVGATTLDEYRQYIEKDAALERRF 333 (857)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC-CCeEEEcCCCHHHHHHhhhcHHHHhhC
Confidence 222222233222 2568999999998631 1223323322211 2456656555443 111122
Q ss_pred ceeecCCCCHHHHHHHHHHHh
Q 048597 208 TMLNASPLRDEEAWRLFEEAV 228 (294)
Q Consensus 208 ~~~~l~~L~~~~~~~Lf~~~~ 228 (294)
..+.+...+.++...++....
T Consensus 334 ~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 334 QKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CEEEeCCCCHHHHHHHHHHHh
Confidence 236666668888888876543
No 102
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.11 E-value=7.7e-05 Score=67.42 Aligned_cols=183 Identities=14% Similarity=0.171 Sum_probs=111.6
Q ss_pred hhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHH-HHh------------------hChhHHHHHHHHHhCCC-----
Q 048597 83 QELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLL-KQR------------------ANLKKIQADIGKKIGLS----- 138 (294)
Q Consensus 83 r~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa-~~v------------------~~~~~i~~~i~~~~~~~----- 138 (294)
|.+..++|..||... .-.+|.|.||-|+||+.|+ .++ -++.......+.++|..
T Consensus 1 R~e~~~~L~~wL~e~--~~TFIvV~GPrGSGK~elV~d~~L~~r~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~PvFsw 78 (431)
T PF10443_consen 1 RKEAIEQLKSWLNEN--PNTFIVVQGPRGSGKRELVMDHVLKDRKNVLVIDCDQIVKARGDAAFIKNLASQVGYFPVFSW 78 (431)
T ss_pred CchHHHHHHHHHhcC--CCeEEEEECCCCCCccHHHHHHHHhCCCCEEEEEChHhhhccChHHHHHHHHHhcCCCcchHH
Confidence 556789999999987 5679999999999999999 555 23334445555555421
Q ss_pred ----------------C--CCcccCChH-HHHHH-------HHH-------------------Hh---ccCCeEEEEccc
Q 048597 139 ----------------T--KSWQENSFE-DKALD-------IAG-------------------IL---SRKRFVLLLDDI 170 (294)
Q Consensus 139 ----------------~--~~~~~~~~~-~~~~~-------l~~-------------------~l---~~kr~LlvlDdv 170 (294)
+ ..+ ..+.+ ++... |+. +| ..++-+||+|+.
T Consensus 79 ~nSiss~IDLa~qGltGqKaGf-Ses~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVIdnF 157 (431)
T PF10443_consen 79 MNSISSFIDLAVQGLTGQKAGF-SESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVIDNF 157 (431)
T ss_pred HHHHHHHHHHHHhhccccccCC-CCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEEcch
Confidence 0 001 12222 22211 111 01 123678999998
Q ss_pred cCcc--------chhhhcCCcCCCCCCcEEEEecCChHHh----hccCCce---eecCCCCHHHHHHHHHHHhCCCCCC-
Q 048597 171 WEHI--------NLNKLGVPLQYLHLGSKIVFTTNSRVVC----GQMEATM---LNASPLRDEEAWRLFEEAVGRYVLD- 234 (294)
Q Consensus 171 ~~~~--------~~~~l~~~l~~~~~gs~iivTtr~~~v~----~~~~~~~---~~l~~L~~~~~~~Lf~~~~~~~~~~- 234 (294)
-... .+.++...+...+ =.+||++|.+.... ..+...+ +.|.-.+.+.|.++...++......
T Consensus 158 ~~k~~~~~~iy~~laeWAa~Lv~~n-IAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~ 236 (431)
T PF10443_consen 158 LHKAEENDFIYDKLAEWAASLVQNN-IAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDTEDS 236 (431)
T ss_pred hccCcccchHHHHHHHHHHHHHhcC-ccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccccccc
Confidence 6521 1112223333332 35788887665442 2333222 8899999999999999988543111
Q ss_pred -----------CC-----CCHHHHHHHHHHhCCCChHHHHHHHHHHcCCCC
Q 048597 235 -----------SH-----PDIPELAKTMAEECCCLPLALKTVGRAMRSISS 269 (294)
Q Consensus 235 -----------~~-----~~~~~~~~~I~~~c~GlPlai~~i~~~L~~~~~ 269 (294)
.. .....-....+...||-=.-+..+++.++.-.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~ 287 (431)
T PF10443_consen 237 SDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGES 287 (431)
T ss_pred ccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCC
Confidence 00 122334477889999999999999999987544
No 103
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.11 E-value=1.4e-05 Score=79.93 Aligned_cols=146 Identities=14% Similarity=0.215 Sum_probs=79.7
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhH---HHHHHH-HHhC-CC------CCCcccCC
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKK---IQADIG-KKIG-LS------TKSWQENS 146 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---i~~~i~-~~~~-~~------~~~~~~~~ 146 (294)
..++||+.++.+++..|... ....+.++|++|+|||+++..+..... +-..+. ..+. +. ...+. ..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~-g~ 249 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYR-GE 249 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhh-hh
Confidence 35899999999999999876 345556899999999999987632110 000000 0000 00 00000 11
Q ss_pred hHHHHHHHHHHhc--cCCeEEEEccccCcc---------chhhhcCCcCCCCCC-cEEEEecCChHHhh--------ccC
Q 048597 147 FEDKALDIAGILS--RKRFVLLLDDIWEHI---------NLNKLGVPLQYLHLG-SKIVFTTNSRVVCG--------QME 206 (294)
Q Consensus 147 ~~~~~~~l~~~l~--~kr~LlvlDdv~~~~---------~~~~l~~~l~~~~~g-s~iivTtr~~~v~~--------~~~ 206 (294)
.+.....+.+.+. +++.+|++|+++... +...+..+.. ..| -++|.+|....... .-.
T Consensus 250 ~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--~~g~i~~IgaTt~~e~r~~~~~d~al~rR 327 (852)
T TIGR03346 250 FEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--ARGELHCIGATTLDEYRKYIEKDAALERR 327 (852)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh--hcCceEEEEeCcHHHHHHHhhcCHHHHhc
Confidence 2222233333332 468999999998521 1222222222 223 35555555443311 112
Q ss_pred CceeecCCCCHHHHHHHHHHHh
Q 048597 207 ATMLNASPLRDEEAWRLFEEAV 228 (294)
Q Consensus 207 ~~~~~l~~L~~~~~~~Lf~~~~ 228 (294)
...+.+...+.++...++....
T Consensus 328 f~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 328 FQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred CCEEEeCCCCHHHHHHHHHHHH
Confidence 2337888889999999887543
No 104
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.10 E-value=7.5e-05 Score=70.97 Aligned_cols=192 Identities=15% Similarity=0.129 Sum_probs=98.7
Q ss_pred ceeehhHH--HHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHHH-----------HHHHHHhCCCCCCcccC
Q 048597 79 TVIRQELL--LDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKIQ-----------ADIGKKIGLSTKSWQEN 145 (294)
Q Consensus 79 ~~vGr~~~--~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~-----------~~i~~~~~~~~~~~~~~ 145 (294)
.++|-... ...+..+..........+.|+|..|+|||.|++.+.+...-. ..|...+... ....
T Consensus 290 FvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~a---l~~~ 366 (617)
T PRK14086 290 FVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINS---IRDG 366 (617)
T ss_pred hcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHH---HHhc
Confidence 34555433 223333333322233568999999999999999885432110 0111111000 0000
Q ss_pred ChHHHHHHHHHHhccCCeEEEEccccCc---cchh-hhcCCcCC-CCCCcEEEEecCCh---------HHhhccCCce-e
Q 048597 146 SFEDKALDIAGILSRKRFVLLLDDIWEH---INLN-KLGVPLQY-LHLGSKIVFTTNSR---------VVCGQMEATM-L 210 (294)
Q Consensus 146 ~~~~~~~~l~~~l~~kr~LlvlDdv~~~---~~~~-~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~-~ 210 (294)
....+.+.+.. -=+|+|||+... ..|. .+...|.. ...|..||+||... .+...+.... +
T Consensus 367 ----~~~~f~~~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv 441 (617)
T PRK14086 367 ----KGDSFRRRYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLIT 441 (617)
T ss_pred ----cHHHHHHHhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceE
Confidence 01122222222 247899999752 2232 22222221 12245688888752 2233444444 9
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHH-------HHHcCCCCHHHHHHHHHHHH
Q 048597 211 NASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVG-------RAMRSISSIEEWEHAIKIIL 281 (294)
Q Consensus 211 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~-------~~L~~~~~~~~w~~~l~~l~ 281 (294)
++++.+.+.-..++.+++.......+ .++..-|++.+.+..-.+.-+- .+....-+...-+.++..+.
T Consensus 442 ~I~~PD~EtR~aIL~kka~~r~l~l~---~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~~itl~la~~vL~~~~ 516 (617)
T PRK14086 442 DVQPPELETRIAILRKKAVQEQLNAP---PEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDLI 516 (617)
T ss_pred EcCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhh
Confidence 99999999999999988855443332 3666777777765543332221 11122245566666666553
No 105
>CHL00181 cbbX CbbX; Provisional
Probab=98.10 E-value=0.00013 Score=63.77 Aligned_cols=145 Identities=14% Similarity=0.158 Sum_probs=75.7
Q ss_pred CceeehhHHHHHHHHHH---hcC----------CCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCC-Ccc
Q 048597 78 RTVIRQELLLDRVWRFV---TDQ----------ERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTK-SWQ 143 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L---~~~----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~-~~~ 143 (294)
..++|.+..+++|.++. .-. ......+.++|++|+||||+|+.+.... ...+.... ...
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~-------~~~g~~~~~~~~ 95 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADIL-------YKLGYIKKGHLL 95 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH-------HHcCCCCCCceE
Confidence 35688776666554432 111 1123458899999999999999984421 11111000 000
Q ss_pred cCChHHHH--------HHHHHHhc-cCCeEEEEccccCc-----------cchhhhcCCcCCCCCCcEEEEecCChHH--
Q 048597 144 ENSFEDKA--------LDIAGILS-RKRFVLLLDDIWEH-----------INLNKLGVPLQYLHLGSKIVFTTNSRVV-- 201 (294)
Q Consensus 144 ~~~~~~~~--------~~l~~~l~-~kr~LlvlDdv~~~-----------~~~~~l~~~l~~~~~gs~iivTtr~~~v-- 201 (294)
..+...+. ......+. ...-+|+||++... +....+...+.....+.+||+++.....
T Consensus 96 ~v~~~~l~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~ 175 (287)
T CHL00181 96 TVTRDDLVGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDK 175 (287)
T ss_pred EecHHHHHHHHhccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHH
Confidence 00011111 11112221 12359999999642 1222333333333345667777764433
Q ss_pred --------hhccCCceeecCCCCHHHHHHHHHHHhCC
Q 048597 202 --------CGQMEATMLNASPLRDEEAWRLFEEAVGR 230 (294)
Q Consensus 202 --------~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 230 (294)
...+ ...+.+.+++.++..+++.+.+..
T Consensus 176 ~~~~np~L~sR~-~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 176 FYESNPGLSSRI-ANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred HHhcCHHHHHhC-CceEEcCCcCHHHHHHHHHHHHHH
Confidence 2222 122899999999999998887743
No 106
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.07 E-value=4.7e-06 Score=63.67 Aligned_cols=21 Identities=48% Similarity=0.542 Sum_probs=18.0
Q ss_pred EEEEcCCCChHHHHHHHhhCh
Q 048597 104 IGLYGTGGVGKTTLLKQRANL 124 (294)
Q Consensus 104 i~I~G~~GiGKTtLa~~v~~~ 124 (294)
|.|+|++|+||||+|+.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999888443
No 107
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.06 E-value=8.9e-06 Score=79.71 Aligned_cols=146 Identities=19% Similarity=0.203 Sum_probs=80.5
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHH-----HHHhC-C------CCCCcccC
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADI-----GKKIG-L------STKSWQEN 145 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i-----~~~~~-~------~~~~~~~~ 145 (294)
+.++||+.++.+++..|... ...-+.++|++|+|||++|+.+..... .... ...++ . .... ...
T Consensus 186 ~~liGR~~ei~~~i~iL~r~--~~~n~LLvGppGvGKT~lae~la~~i~-~~~vP~~l~~~~~~~l~~~~llaG~~-~~G 261 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIV-QGDVPEVMADCTIYSLDIGSLLAGTK-YRG 261 (758)
T ss_pred CcCcCCCHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHH-hcCCCchhcCCeEEeccHHHHhcccc-hhh
Confidence 35899999999999988875 334556899999999999988742110 0000 00000 0 0000 001
Q ss_pred ChHHHHHHHHHHh-ccCCeEEEEccccCc----------cchhhhcCCcCCCCCCcEEEEecCChHHhh--------ccC
Q 048597 146 SFEDKALDIAGIL-SRKRFVLLLDDIWEH----------INLNKLGVPLQYLHLGSKIVFTTNSRVVCG--------QME 206 (294)
Q Consensus 146 ~~~~~~~~l~~~l-~~kr~LlvlDdv~~~----------~~~~~l~~~l~~~~~gs~iivTtr~~~v~~--------~~~ 206 (294)
..+.....+...+ +.+..+|++|+++.. .+...+..++... ..-++|-+|....... .-.
T Consensus 262 e~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~E~~~~~~~D~AL~rR 340 (758)
T PRK11034 262 DFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEFSNIFEKDRALARR 340 (758)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChHHHHHHhhccHHHHhh
Confidence 1222223333333 345789999999742 1222222232222 1235555555443211 112
Q ss_pred CceeecCCCCHHHHHHHHHHHh
Q 048597 207 ATMLNASPLRDEEAWRLFEEAV 228 (294)
Q Consensus 207 ~~~~~l~~L~~~~~~~Lf~~~~ 228 (294)
...+.+.+.+.++...++....
T Consensus 341 Fq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 341 FQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred CcEEEeCCCCHHHHHHHHHHHH
Confidence 2349999999999999987543
No 108
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.06 E-value=0.00014 Score=67.06 Aligned_cols=198 Identities=16% Similarity=0.110 Sum_probs=103.2
Q ss_pred ceeehhHHHHHHHHHHhcC-----------CCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCC-CCcccCC
Q 048597 79 TVIRQELLLDRVWRFVTDQ-----------ERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLST-KSWQENS 146 (294)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~-~~~~~~~ 146 (294)
.+.|.+..+++|.+.+.-. -.....+.++|++|+|||+||+.+.+.... .+....+... ..+....
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~--~fi~V~~seL~~k~~Ge~ 261 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA--TFLRVVGSELIQKYLGDG 261 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC--CEEEEecchhhhhhcchH
Confidence 4678888888887776421 124567889999999999999999553210 0000000000 0000111
Q ss_pred hHHHHHHHHHHhccCCeEEEEccccCcc------------c----hhhhcCCcC--CCCCCcEEEEecCChHHhhc--c-
Q 048597 147 FEDKALDIAGILSRKRFVLLLDDIWEHI------------N----LNKLGVPLQ--YLHLGSKIVFTTNSRVVCGQ--M- 205 (294)
Q Consensus 147 ~~~~~~~l~~~l~~kr~LlvlDdv~~~~------------~----~~~l~~~l~--~~~~gs~iivTtr~~~v~~~--~- 205 (294)
...+...+.....+.+.+|+||++.... . +..+...+. ....+..||+||...+.... .
T Consensus 262 ~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlR 341 (438)
T PTZ00361 262 PKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIR 341 (438)
T ss_pred HHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhcc
Confidence 1112222222234677899999985310 0 111111111 11235578888875543221 1
Q ss_pred --CCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChH----HHHHHHHHH--cCC---CCHHHH
Q 048597 206 --EATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPL----ALKTVGRAM--RSI---SSIEEW 273 (294)
Q Consensus 206 --~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl----ai~~i~~~L--~~~---~~~~~w 273 (294)
.... +++.+.+.++..++|..+..........++ ..++..+.|+-= ++..-|+++ +.. -+.+++
T Consensus 342 pGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl----~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~ 417 (438)
T PTZ00361 342 PGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDL----EEFIMAKDELSGADIKAICTEAGLLALRERRMKVTQADF 417 (438)
T ss_pred CCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCH----HHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHH
Confidence 1223 899999999999999877644332223334 445555555433 233333332 222 356777
Q ss_pred HHHHHHHHh
Q 048597 274 EHAIKIILR 282 (294)
Q Consensus 274 ~~~l~~l~~ 282 (294)
+.+++....
T Consensus 418 ~~A~~~v~~ 426 (438)
T PTZ00361 418 RKAKEKVLY 426 (438)
T ss_pred HHHHHHHHh
Confidence 777776533
No 109
>CHL00176 ftsH cell division protein; Validated
Probab=98.04 E-value=0.00027 Score=68.29 Aligned_cols=194 Identities=16% Similarity=0.113 Sum_probs=101.6
Q ss_pred CceeehhHHHHHHHHH---HhcCC-------CCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCc----c
Q 048597 78 RTVIRQELLLDRVWRF---VTDQE-------RNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSW----Q 143 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~---L~~~~-------~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~----~ 143 (294)
..+.|.++..+++.+. +.... ...+-|.++|++|+|||+||+.+.....+- .+.++...+ .
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-----~i~is~s~f~~~~~ 257 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-----FFSISGSEFVEMFV 257 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eeeccHHHHHHHhh
Confidence 3577877655555444 33321 234579999999999999999984422100 000000000 0
Q ss_pred cCChHHHHHHHHHHhccCCeEEEEccccCc------------cc----hhhhcCCcC--CCCCCcEEEEecCChHHhh--
Q 048597 144 ENSFEDKALDIAGILSRKRFVLLLDDIWEH------------IN----LNKLGVPLQ--YLHLGSKIVFTTNSRVVCG-- 203 (294)
Q Consensus 144 ~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~------------~~----~~~l~~~l~--~~~~gs~iivTtr~~~v~~-- 203 (294)
......+...+.......+++|+|||++.. .. +..+...+. ....+..+|.||.......
T Consensus 258 g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~A 337 (638)
T CHL00176 258 GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAA 337 (638)
T ss_pred hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhh
Confidence 111122233344444577899999999642 11 222221111 1233556677776543311
Q ss_pred ---ccCCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCCh-HHHHHHHH---HH---cCC--CCH
Q 048597 204 ---QMEATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLP-LALKTVGR---AM---RSI--SSI 270 (294)
Q Consensus 204 ---~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-lai~~i~~---~L---~~~--~~~ 270 (294)
...... +.+...+.++-.++|+.++...... + ......+++.+.|.. --+..+.. ++ +.+ -+.
T Consensus 338 LlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~--~--d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~ 413 (638)
T CHL00176 338 LLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS--P--DVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITM 413 (638)
T ss_pred hhccccCceEEEECCCCHHHHHHHHHHHHhhcccc--h--hHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCH
Confidence 112233 8888899999899998877542211 1 223467888888833 22332222 11 111 355
Q ss_pred HHHHHHHHHH
Q 048597 271 EEWEHAIKII 280 (294)
Q Consensus 271 ~~w~~~l~~l 280 (294)
++.+.+++.+
T Consensus 414 ~dl~~Ai~rv 423 (638)
T CHL00176 414 KEIDTAIDRV 423 (638)
T ss_pred HHHHHHHHHH
Confidence 6677776665
No 110
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.00 E-value=1.8e-05 Score=66.50 Aligned_cols=101 Identities=20% Similarity=0.175 Sum_probs=59.9
Q ss_pred cCceeehhHHHHHHHHHHhc--CCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHHHHHHH
Q 048597 77 ERTVIRQELLLDRVWRFVTD--QERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFEDKALDI 154 (294)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l 154 (294)
-+.++|.+...+.|++-... ......-+.+||..|+|||+|++.+.+...-.. ++-+.+... .-.+...+...+
T Consensus 26 l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G--LRlIev~k~--~L~~l~~l~~~l 101 (249)
T PF05673_consen 26 LDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG--LRLIEVSKE--DLGDLPELLDLL 101 (249)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC--ceEEEECHH--HhccHHHHHHHH
Confidence 45689999888877765432 112567888999999999999998844222111 122222111 122334444444
Q ss_pred HHHhccCCeEEEEccccC---ccchhhhcCCc
Q 048597 155 AGILSRKRFVLLLDDIWE---HINLNKLGVPL 183 (294)
Q Consensus 155 ~~~l~~kr~LlvlDdv~~---~~~~~~l~~~l 183 (294)
+. ...||+|++||+.= ......+...+
T Consensus 102 ~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~L 131 (249)
T PF05673_consen 102 RD--RPYKFILFCDDLSFEEGDTEYKALKSVL 131 (249)
T ss_pred hc--CCCCEEEEecCCCCCCCcHHHHHHHHHh
Confidence 42 45799999999842 33455554444
No 111
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.98 E-value=7.4e-05 Score=69.23 Aligned_cols=165 Identities=14% Similarity=0.167 Sum_probs=88.4
Q ss_pred ceEEEEEcCCCChHHHHHHHhhChhH-------------HHHHHHHHhCCCCCCcccCChHHHHHHHHHHhccCCeEEEE
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRANLKK-------------IQADIGKKIGLSTKSWQENSFEDKALDIAGILSRKRFVLLL 167 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~~~~~-------------i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~Llvl 167 (294)
...+.|+|+.|+|||+|++.+.+... +...+...+. .. ....++..+ ...-+|++
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~-------~~----~~~~f~~~~-~~~dvLiI 208 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIR-------SG----EMQRFRQFY-RNVDALFI 208 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHh-------cc----hHHHHHHHc-ccCCEEEE
Confidence 45789999999999999998854321 1111111110 00 011233322 23458899
Q ss_pred ccccCccc----hhhhcCCcCC-CCCCcEEEEecCCh---------HHhhccCCce-eecCCCCHHHHHHHHHHHhCCCC
Q 048597 168 DDIWEHIN----LNKLGVPLQY-LHLGSKIVFTTNSR---------VVCGQMEATM-LNASPLRDEEAWRLFEEAVGRYV 232 (294)
Q Consensus 168 Ddv~~~~~----~~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~ 232 (294)
||+..... .+.+...+.. ...|..||+||... .+...+.... +.+.+++.++...++.+++....
T Consensus 209 DDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~ 288 (445)
T PRK12422 209 EDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALS 288 (445)
T ss_pred cchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcC
Confidence 99865321 1222222211 11245788888542 1233344344 89999999999999998875443
Q ss_pred CCCCCCHHHHHHHHHHhCCCC-hHHHHHHHHH---------HcCCCCHHHHHHHHHHH
Q 048597 233 LDSHPDIPELAKTMAEECCCL-PLALKTVGRA---------MRSISSIEEWEHAIKII 280 (294)
Q Consensus 233 ~~~~~~~~~~~~~I~~~c~Gl-Plai~~i~~~---------L~~~~~~~~w~~~l~~l 280 (294)
...+ .++..-|+..+.|. |-....+-.+ ....-+.+.-+.++..+
T Consensus 289 ~~l~---~evl~~la~~~~~dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 289 IRIE---ETALDFLIEALSSNVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDV 343 (445)
T ss_pred CCCC---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 2222 35556676666643 3333222222 11224566666666654
No 112
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.97 E-value=0.00025 Score=62.77 Aligned_cols=173 Identities=13% Similarity=0.062 Sum_probs=100.5
Q ss_pred ceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhC----hh----HHHHHHHHHhCCCC-----C-----
Q 048597 79 TVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRAN----LK----KIQADIGKKIGLST-----K----- 140 (294)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~----~~----~i~~~i~~~~~~~~-----~----- 140 (294)
.++|.+..++.+...+..+. -.+...++|+.|+||+++|..+.. .. .....+. ....+. .
T Consensus 5 ~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~-~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLE-EGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccc-cCCCCCEEEEecccccc
Confidence 57899999999999988761 247999999999999999877711 10 0000110 000000 0
Q ss_pred C-----------------cccCChHHHHHHHHHHh-----ccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEec
Q 048597 141 S-----------------WQENSFEDKALDIAGIL-----SRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTT 196 (294)
Q Consensus 141 ~-----------------~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTt 196 (294)
. ......+ ....+.+++ .+++-++|+|++.. ....+.+...+....+ +.+|++|
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~id-~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~-~~fILi~ 160 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRLE-QIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGN-GTLILIA 160 (314)
T ss_pred ccccchhhhhhccccccccccCcHH-HHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCC-CeEEEEE
Confidence 0 0001111 223444444 35677899999876 3445555555543333 3555555
Q ss_pred CCh-HHhhcc--CCceeecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHH
Q 048597 197 NSR-VVCGQM--EATMLNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVG 261 (294)
Q Consensus 197 r~~-~v~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~ 261 (294)
.+. .+...+ .+..+++.++++++..+.+.+...... . ......++..++|.|..+..+.
T Consensus 161 ~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~----~--~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 161 PSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI----L--NINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred CChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc----c--hhHHHHHHHHcCCCHHHHHHHH
Confidence 443 332222 223399999999999999987643211 0 1113578899999997665543
No 113
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.95 E-value=0.0003 Score=59.15 Aligned_cols=164 Identities=17% Similarity=0.202 Sum_probs=92.3
Q ss_pred CceEEEEEcCCCChHHHHHHHh------------------hChhHHHHHHHHHhCCCCCCcccCChHHHHHHHHHHh-cc
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR------------------ANLKKIQADIGKKIGLSTKSWQENSFEDKALDIAGIL-SR 160 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v------------------~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~ 160 (294)
+..++.++|.-|+|||++.+.+ .....+...+...+..................+.... ++
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g 129 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKG 129 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhC
Confidence 5679999999999999999944 2333455555555543111101111222333333333 57
Q ss_pred CC-eEEEEccccC--ccchhhhcCCcC---CCCCCcEEEEecCCh-------HHhhcc--CCce-eecCCCCHHHHHHHH
Q 048597 161 KR-FVLLLDDIWE--HINLNKLGVPLQ---YLHLGSKIVFTTNSR-------VVCGQM--EATM-LNASPLRDEEAWRLF 224 (294)
Q Consensus 161 kr-~LlvlDdv~~--~~~~~~l~~~l~---~~~~gs~iivTtr~~-------~v~~~~--~~~~-~~l~~L~~~~~~~Lf 224 (294)
+| ..+++||.+. ....+.++-... +...--+|+.....+ .+.... ...- |++.|++.++...++
T Consensus 130 ~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl 209 (269)
T COG3267 130 KRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYL 209 (269)
T ss_pred CCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHHHH
Confidence 77 8999999876 333443322111 111111233333211 011111 1222 899999999888888
Q ss_pred HHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHHHH
Q 048597 225 EEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVGRA 263 (294)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~~ 263 (294)
..++.......+---.+....|.....|.|.+|..++..
T Consensus 210 ~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 210 RHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 877744332222222355688999999999999887653
No 114
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.94 E-value=0.00024 Score=64.43 Aligned_cols=125 Identities=20% Similarity=0.238 Sum_probs=74.5
Q ss_pred CceEEEEEcCCCChHHHHHHHhhChhH---------------HHHHHHHHhCCCCCCcccCChHHHHHHHHHHhccCCeE
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANLKK---------------IQADIGKKIGLSTKSWQENSFEDKALDIAGILSRKRFV 164 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~~~---------------i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~L 164 (294)
....+.|+|+.|+|||.|++.+.+... ...++...+. +.-...+++.. .-=+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~-----------~~~~~~Fk~~y--~~dl 178 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALR-----------DNEMEKFKEKY--SLDL 178 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHH-----------hhhHHHHHHhh--ccCe
Confidence 478999999999999999999844221 1111111110 01222344433 3348
Q ss_pred EEEccccCc---cchh-hhcCCcCC-CCCCcEEEEecCCh---------HHhhccCCce-eecCCCCHHHHHHHHHHHhC
Q 048597 165 LLLDDIWEH---INLN-KLGVPLQY-LHLGSKIVFTTNSR---------VVCGQMEATM-LNASPLRDEEAWRLFEEAVG 229 (294)
Q Consensus 165 lvlDdv~~~---~~~~-~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~ 229 (294)
+++||++-. +.|. .+...|.. ...|-.||+|++.. ....++.... +.+.+.+.+....++.+++.
T Consensus 179 llIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 179 LLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred eeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 899999762 2232 22222221 12234899988542 2344455555 99999999999999999875
Q ss_pred CCCCCCCC
Q 048597 230 RYVLDSHP 237 (294)
Q Consensus 230 ~~~~~~~~ 237 (294)
......++
T Consensus 259 ~~~~~i~~ 266 (408)
T COG0593 259 DRGIEIPD 266 (408)
T ss_pred hcCCCCCH
Confidence 55434433
No 115
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.93 E-value=5.1e-05 Score=71.00 Aligned_cols=152 Identities=13% Similarity=0.082 Sum_probs=81.9
Q ss_pred ceeehhHHHHHHHHHHhcC-----------CCCceEEEEEcCCCChHHHHHHHhhChhHHHHHH-----HHHhCCCCCCc
Q 048597 79 TVIRQELLLDRVWRFVTDQ-----------ERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADI-----GKKIGLSTKSW 142 (294)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i-----~~~~~~~~~~~ 142 (294)
.+.|.+..++++.+.+... -..++-+.++||+|+|||++|+.+.+.....-.. ...+.+.....
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eL 262 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPEL 262 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhh
Confidence 4678898888888876421 1245679999999999999999986532111000 00000100000
Q ss_pred cc---CChHHHHHHHHHHh-----ccCCeEEEEccccCc---------cch-----hhhcCCcCC--CCCCcEEEEecCC
Q 048597 143 QE---NSFEDKALDIAGIL-----SRKRFVLLLDDIWEH---------INL-----NKLGVPLQY--LHLGSKIVFTTNS 198 (294)
Q Consensus 143 ~~---~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~---------~~~-----~~l~~~l~~--~~~gs~iivTtr~ 198 (294)
.. .........+.... .+++++|+||+++.. .+. ..+...+.. ...+..||.||..
T Consensus 263 l~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~ 342 (512)
T TIGR03689 263 LNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNR 342 (512)
T ss_pred cccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCC
Confidence 00 01112222232222 247899999999752 111 122212211 1123445666654
Q ss_pred hHH---h--hccCCce-eecCCCCHHHHHHHHHHHhCC
Q 048597 199 RVV---C--GQMEATM-LNASPLRDEEAWRLFEEAVGR 230 (294)
Q Consensus 199 ~~v---~--~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~ 230 (294)
... + ....... +++...+.++..++|..++..
T Consensus 343 ~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 343 EDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred hhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 432 1 1112333 899999999999999987643
No 116
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.91 E-value=0.00021 Score=70.50 Aligned_cols=45 Identities=27% Similarity=0.359 Sum_probs=36.0
Q ss_pred cCceeehhHHHHHHHHHHhcC-------CCCceEEEEEcCCCChHHHHHHHh
Q 048597 77 ERTVIRQELLLDRVWRFVTDQ-------ERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...++|.+..++.+...+... .....++.++||.|+|||+||+.+
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~l 504 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQL 504 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHH
Confidence 345889999999988888642 123457899999999999999998
No 117
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.90 E-value=6.8e-05 Score=62.55 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=36.4
Q ss_pred HHHHHHHHHhccCCeEEEEccccCc---cchhhhcCCcC--CCCCCcEEEEecCChHHhhccCC
Q 048597 149 DKALDIAGILSRKRFVLLLDDIWEH---INLNKLGVPLQ--YLHLGSKIVFTTNSRVVCGQMEA 207 (294)
Q Consensus 149 ~~~~~l~~~l~~kr~LlvlDdv~~~---~~~~~l~~~l~--~~~~gs~iivTtr~~~v~~~~~~ 207 (294)
+..-.+.+.|-..+-+|+.|+--.. ..-..+...|. ....|..||+.|.+..++..+..
T Consensus 148 qQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr 211 (226)
T COG1136 148 QQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADR 211 (226)
T ss_pred HHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCE
Confidence 3444577777888889999975321 11112222222 12347789999999999885543
No 118
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.87 E-value=6.5e-05 Score=60.37 Aligned_cols=62 Identities=18% Similarity=0.266 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhccCCeEEEEcccc----CccchhhhcCCcCCCCCCcEEEEecCChHHhhccCCce
Q 048597 148 EDKALDIAGILSRKRFVLLLDDIW----EHINLNKLGVPLQYLHLGSKIVFTTNSRVVCGQMEATM 209 (294)
Q Consensus 148 ~~~~~~l~~~l~~kr~LlvlDdv~----~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~ 209 (294)
++..-.|.+.+-+++-+|+-|+-- -...|+-+...-.-+..|..|+++|.+......+....
T Consensus 142 EQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rv 207 (223)
T COG2884 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRV 207 (223)
T ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcE
Confidence 334445666777888999999653 33455544222223556999999999999887776655
No 119
>PRK10536 hypothetical protein; Provisional
Probab=97.85 E-value=2.9e-05 Score=65.92 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=33.5
Q ss_pred ceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHh
Q 048597 79 TVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.+.++......++.++... .++.+.|++|+|||+||..+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~ 94 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAK 94 (262)
T ss_pred cccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHH
Confidence 4567888888899888764 59999999999999999886
No 120
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=0.0017 Score=57.58 Aligned_cols=163 Identities=9% Similarity=0.030 Sum_probs=93.5
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHh-----hChh---------HHHHHHHHHhC-----CCCCCcccCC
Q 048597 86 LLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR-----ANLK---------KIQADIGKKIG-----LSTKSWQENS 146 (294)
Q Consensus 86 ~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v-----~~~~---------~i~~~i~~~~~-----~~~~~~~~~~ 146 (294)
....+.+.+..+ .-...+.++|+.|+||+++|..+ +... ..-+.+...-. +.........
T Consensus 10 ~~~~l~~~~~~~-rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~ 88 (325)
T PRK06871 10 TYQQITQAFQQG-LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIG 88 (325)
T ss_pred HHHHHHHHHHcC-CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCC
Confidence 344566666554 13468889999999999999988 2110 11111111000 0000001122
Q ss_pred hHHHHHHHHHHh-----ccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEecCChH-Hhhcc--CCceeecCCCC
Q 048597 147 FEDKALDIAGIL-----SRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTTNSRV-VCGQM--EATMLNASPLR 216 (294)
Q Consensus 147 ~~~~~~~l~~~l-----~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~--~~~~~~l~~L~ 216 (294)
.++.. .+.+.+ .+++-++|+|+++. ......+...+.....++.+|++|.+.. +...+ .+..+.+.+++
T Consensus 89 id~iR-~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~ 167 (325)
T PRK06871 89 VDQVR-EINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPE 167 (325)
T ss_pred HHHHH-HHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCC
Confidence 33332 333433 36667888999976 3456666666655555667777776543 33222 23449999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHH
Q 048597 217 DEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALK 258 (294)
Q Consensus 217 ~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 258 (294)
+++..+.+....... . ..+...+..++|.|+.+.
T Consensus 168 ~~~~~~~L~~~~~~~-----~---~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 168 EQQALDWLQAQSSAE-----I---SEILTALRINYGRPLLAL 201 (325)
T ss_pred HHHHHHHHHHHhccC-----h---HHHHHHHHHcCCCHHHHH
Confidence 999988887654211 1 124567888999997443
No 121
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.84 E-value=0.00042 Score=68.57 Aligned_cols=167 Identities=17% Similarity=0.112 Sum_probs=88.6
Q ss_pred ceeehhHHHHHHHHHHhcC-----------CCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCC----Ccc
Q 048597 79 TVIRQELLLDRVWRFVTDQ-----------ERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTK----SWQ 143 (294)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~----~~~ 143 (294)
.+.|.+..++.|.+.+... -...+-+.++|++|+|||+||+.+.+.... . .+.+... .+.
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~--~---fi~v~~~~l~~~~v 528 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA--N---FIAVRGPEILSKWV 528 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC--C---EEEEehHHHhhccc
Confidence 4678887777777665421 123456899999999999999999443210 0 0000000 001
Q ss_pred cCChHHHHHHHHHHhccCCeEEEEccccCcc---------c-----hhhhcCCcCC--CCCCcEEEEecCChHHhh---c
Q 048597 144 ENSFEDKALDIAGILSRKRFVLLLDDIWEHI---------N-----LNKLGVPLQY--LHLGSKIVFTTNSRVVCG---Q 204 (294)
Q Consensus 144 ~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~---------~-----~~~l~~~l~~--~~~gs~iivTtr~~~v~~---~ 204 (294)
..+...+...+...-....++|++|++.... . ...+...+.. ...+.-||.||....... .
T Consensus 529 Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~all 608 (733)
T TIGR01243 529 GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALL 608 (733)
T ss_pred CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhc
Confidence 1122222222333334667999999986410 0 1112111111 122345566665543311 1
Q ss_pred --cCCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCCh
Q 048597 205 --MEATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLP 254 (294)
Q Consensus 205 --~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 254 (294)
..... +.+...+.++-.++|+.+..........++ ..+++.|.|.-
T Consensus 609 RpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l----~~la~~t~g~s 657 (733)
T TIGR01243 609 RPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDL----EELAEMTEGYT 657 (733)
T ss_pred CCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHcCCCC
Confidence 12334 888889999999998766543322222233 55667777755
No 122
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.83 E-value=0.00015 Score=67.54 Aligned_cols=153 Identities=16% Similarity=0.135 Sum_probs=90.0
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHh--------------hChhHHHHHHHHHhCCC---CC
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR--------------ANLKKIQADIGKKIGLS---TK 140 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v--------------~~~~~i~~~i~~~~~~~---~~ 140 (294)
++++|.+.....|.+.+..+. -..-....|+.|+||||+|+.+ |+.-..-+.|...-.+. -+
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiD 94 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEID 94 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhh
Confidence 356999999999999888762 3457789999999999999887 11111112222110000 00
Q ss_pred CcccCChHHHHHHHHHHh-----ccCCeEEEEccccC--ccchhhhcCCcCCCCCCcE-EEEecCChHHh-hcc-CCcee
Q 048597 141 SWQENSFEDKALDIAGIL-----SRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSK-IVFTTNSRVVC-GQM-EATML 210 (294)
Q Consensus 141 ~~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~-iivTtr~~~v~-~~~-~~~~~ 210 (294)
.......++. +.|.+.. .++--++++|+|+- ...|..+...+...-.... |+.||-...+. +.. .+.+|
T Consensus 95 aASn~gVddi-R~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f 173 (515)
T COG2812 95 AASNTGVDDI-REIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRF 173 (515)
T ss_pred hhhccChHHH-HHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccc
Confidence 0112223332 2233332 35556889999974 6788888777644333334 44555444442 222 23349
Q ss_pred ecCCCCHHHHHHHHHHHhCCCC
Q 048597 211 NASPLRDEEAWRLFEEAVGRYV 232 (294)
Q Consensus 211 ~l~~L~~~~~~~Lf~~~~~~~~ 232 (294)
.++.|+.++....+...+..+.
T Consensus 174 ~fkri~~~~I~~~L~~i~~~E~ 195 (515)
T COG2812 174 DFKRLDLEEIAKHLAAILDKEG 195 (515)
T ss_pred cccCCCHHHHHHHHHHHHHhcC
Confidence 9999999988877777665544
No 123
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.82 E-value=0.00038 Score=61.70 Aligned_cols=186 Identities=17% Similarity=0.158 Sum_probs=102.6
Q ss_pred CcCceeehhHHHHHHHHHHhcCCCC-ceEEEEEcCCCChHHHHHHHh----------------hChhHHHHHHHHHhCCC
Q 048597 76 VERTVIRQELLLDRVWRFVTDQERN-RGIIGLYGTGGVGKTTLLKQR----------------ANLKKIQADIGKKIGLS 138 (294)
Q Consensus 76 ~~~~~vGr~~~~~~l~~~L~~~~~~-~~vi~I~G~~GiGKTtLa~~v----------------~~~~~i~~~i~~~~~~~ 138 (294)
..+.+.+|+..+..+..++...+.. ++.|.|.|-+|.|||.+++++ |+..-....|+...+..
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~ 83 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLA 83 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccC
Confidence 3567889999999999998877653 456699999999999999998 44445666777776522
Q ss_pred CCC-ccc-C---ChHHHHHHHHH--Hhc--cCCeEEEEccccCccchhhh--------cCCcCCCCCCcEEEEecCC-hH
Q 048597 139 TKS-WQE-N---SFEDKALDIAG--ILS--RKRFVLLLDDIWEHINLNKL--------GVPLQYLHLGSKIVFTTNS-RV 200 (294)
Q Consensus 139 ~~~-~~~-~---~~~~~~~~l~~--~l~--~kr~LlvlDdv~~~~~~~~l--------~~~l~~~~~gs~iivTtr~-~~ 200 (294)
... ... . ...+....+.+ ..+ ++.++||||++....+.+.+ ...++ .....|++..-. +.
T Consensus 84 d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~--~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 84 DKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN--EPTIVIILSAPSCEK 161 (438)
T ss_pred CCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC--CCceEEEEeccccHH
Confidence 221 010 0 11112222222 112 46899999999764443322 11111 223334333322 22
Q ss_pred -HhhccCCce---eecCCCCHHHHHHHHHHHhCCCCC-CCCCCHHH-HHHHHHHhCCCChHHHHHHHHHH
Q 048597 201 -VCGQMEATM---LNASPLRDEEAWRLFEEAVGRYVL-DSHPDIPE-LAKTMAEECCCLPLALKTVGRAM 264 (294)
Q Consensus 201 -v~~~~~~~~---~~l~~L~~~~~~~Lf~~~~~~~~~-~~~~~~~~-~~~~I~~~c~GlPlai~~i~~~L 264 (294)
....+++.. ++...-+.++...++.+.-.+... +-...+-. +..-....|+ -+-.+..+....
T Consensus 162 ~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~~~ 230 (438)
T KOG2543|consen 162 QYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACR-DVNELRSLISLA 230 (438)
T ss_pred HhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHH
Confidence 222244432 778888999988888664332110 00011111 2234445666 555555555443
No 124
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.81 E-value=3.4e-05 Score=68.92 Aligned_cols=159 Identities=21% Similarity=0.209 Sum_probs=97.4
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC------------------hhHHHH-HHHHHhCCCCCCcccCChHHHHHHHHHHhcc
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN------------------LKKIQA-DIGKKIGLSTKSWQENSFEDKALDIAGILSR 160 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~------------------~~~i~~-~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 160 (294)
..+.+.++|+||+||||++-.+-. +..... .....+|++.. +-+.....+...+.+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-----~g~~~~~~~~~~~~~ 87 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAHAASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-----PGDSAVDTLVRRIGD 87 (414)
T ss_pred hhheeeeeccCccceehhhhhhHhHhhhcccceeeeeccccCchhHhHHHHHhhcccccc-----cchHHHHHHHHHHhh
Confidence 458999999999999999888722 112222 22222333221 112234456677789
Q ss_pred CCeEEEEccccCcc-chhhhcCCcCCCCCCcEEEEecCChHHhhccCCce-eecCCCCHH-HHHHHHHHHhCC--CCCCC
Q 048597 161 KRFVLLLDDIWEHI-NLNKLGVPLQYLHLGSKIVFTTNSRVVCGQMEATM-LNASPLRDE-EAWRLFEEAVGR--YVLDS 235 (294)
Q Consensus 161 kr~LlvlDdv~~~~-~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~-~~l~~L~~~-~~~~Lf~~~~~~--~~~~~ 235 (294)
+|.++|+||..+.. .-..+...+-.+...-.|+.|+|.... +.... +.+.+|+.. ++.++|...+.. .....
T Consensus 88 rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l 164 (414)
T COG3903 88 RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWL 164 (414)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccceee
Confidence 99999999986621 111111122222223457777776532 22233 777777654 688888766522 11122
Q ss_pred CCCHHHHHHHHHHhCCCChHHHHHHHHHHcC
Q 048597 236 HPDIPELAKTMAEECCCLPLALKTVGRAMRS 266 (294)
Q Consensus 236 ~~~~~~~~~~I~~~c~GlPlai~~i~~~L~~ 266 (294)
.......+.+|.+...|.|++|...++..++
T Consensus 165 ~~~~~a~v~~icr~ldg~~laielaaarv~s 195 (414)
T COG3903 165 TDDNAAAVAEICRRLDGIPLAIELAAARVRS 195 (414)
T ss_pred cCCchHHHHHHHHHhhcchHHHHHHHHHHHh
Confidence 2334567799999999999999999998877
No 125
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.79 E-value=0.00065 Score=58.67 Aligned_cols=33 Identities=30% Similarity=0.411 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHh
Q 048597 85 LLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 85 ~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+++..++..+ ..|.+.|++|+|||+||+.+
T Consensus 9 ~l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~l 41 (262)
T TIGR02640 9 RVTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHV 41 (262)
T ss_pred HHHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHH
Confidence 3455666666654 56779999999999999988
No 126
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.78 E-value=0.00079 Score=55.98 Aligned_cols=89 Identities=17% Similarity=0.180 Sum_probs=55.8
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChh---HHHHHHHHHhCCCCCCcccCChHHHHHHH
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLK---KIQADIGKKIGLSTKSWQENSFEDKALDI 154 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~---~i~~~i~~~~~~~~~~~~~~~~~~~~~~l 154 (294)
..+||-++.++++.-...++ +.+-+.|.||+|+||||-+..+.... ...+.++ .++-+ +....+-....|
T Consensus 27 ~dIVGNe~tv~rl~via~~g--nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vL-ELNAS----deRGIDvVRn~I 99 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEG--NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVL-ELNAS----DERGIDVVRNKI 99 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcC--CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhh-hccCc----cccccHHHHHHH
Confidence 46899999999888777766 88999999999999999766552210 0111111 11111 223334444455
Q ss_pred HHHhc-------cCCeEEEEccccCc
Q 048597 155 AGILS-------RKRFVLLLDDIWEH 173 (294)
Q Consensus 155 ~~~l~-------~kr~LlvlDdv~~~ 173 (294)
+.+-+ ++.-+++||+..+.
T Consensus 100 K~FAQ~kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 100 KMFAQKKVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred HHHHHhhccCCCCceeEEEeeccchh
Confidence 44432 55668899998873
No 127
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00016 Score=68.87 Aligned_cols=142 Identities=21% Similarity=0.199 Sum_probs=80.4
Q ss_pred CceeehhHHHHHHHHHHhcC----CCCceEEEEEcCCCChHHHHHHHhh----------------ChhHHHHHHHHHhCC
Q 048597 78 RTVIRQELLLDRVWRFVTDQ----ERNRGIIGLYGTGGVGKTTLLKQRA----------------NLKKIQADIGKKIGL 137 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~~GiGKTtLa~~v~----------------~~~~i~~~i~~~~~~ 137 (294)
..-+|.++..++|+++|.-. .-.-++++++||+|+|||+|++.|. +..+|..|=-..+|
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIG- 401 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIG- 401 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccc-
Confidence 34589999999999999642 3355899999999999999998772 11222222111111
Q ss_pred CCCCcccCChHHHHHHHHHHhccCCeEEEEccccCc------cchhhhcCCcC-CCCC------------CcEE-EEecC
Q 048597 138 STKSWQENSFEDKALDIAGILSRKRFVLLLDDIWEH------INLNKLGVPLQ-YLHL------------GSKI-VFTTN 197 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~------~~~~~l~~~l~-~~~~------------gs~i-ivTtr 197 (294)
.-.....+.+.+. +.+.-+++||+++.. +.-..+...|. ..++ =|.| +|+|-
T Consensus 402 -------amPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTA 473 (782)
T COG0466 402 -------AMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATA 473 (782)
T ss_pred -------cCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeec
Confidence 1122333333332 567789999998752 11111111111 0000 1334 45554
Q ss_pred Ch-H-H-hhccCCce-eecCCCCHHHHHHHHHHHh
Q 048597 198 SR-V-V-CGQMEATM-LNASPLRDEEAWRLFEEAV 228 (294)
Q Consensus 198 ~~-~-v-~~~~~~~~-~~l~~L~~~~~~~Lf~~~~ 228 (294)
|. + + +..+.-.. +++...++++=.++-++++
T Consensus 474 Nsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 474 NSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred CccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 32 2 1 22333333 8999999998888776654
No 128
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.76 E-value=0.00012 Score=73.03 Aligned_cols=45 Identities=27% Similarity=0.341 Sum_probs=36.5
Q ss_pred cCceeehhHHHHHHHHHHhc-------CCCCceEEEEEcCCCChHHHHHHHh
Q 048597 77 ERTVIRQELLLDRVWRFVTD-------QERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~-------~~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...++|.+..++.+.+.+.. +.....++.++||.|+|||.||+.+
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~L 616 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALAL 616 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHH
Confidence 35689999999999988853 2234558999999999999999887
No 129
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.75 E-value=0.0016 Score=57.69 Aligned_cols=165 Identities=15% Similarity=0.048 Sum_probs=91.9
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHh-----hChh------HHHHHHHHHhC-----C--CCCCc-----
Q 048597 86 LLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR-----ANLK------KIQADIGKKIG-----L--STKSW----- 142 (294)
Q Consensus 86 ~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v-----~~~~------~i~~~i~~~~~-----~--~~~~~----- 142 (294)
....+...+..+ .-...+.++|+.|+||+++|..+ +... ....-+...-. + ..+..
T Consensus 12 ~~~~l~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~ 90 (319)
T PRK08769 12 AYDQTVAALDAG-RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLR 90 (319)
T ss_pred HHHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCccccccc
Confidence 455566666554 13457999999999999999887 2110 00011110000 0 00000
Q ss_pred ccCChHHHHHHHHHHh-----ccCCeEEEEccccCc--cchhhhcCCcCCCCCCcEEEEecCChH-Hhhcc--CCceeec
Q 048597 143 QENSFEDKALDIAGIL-----SRKRFVLLLDDIWEH--INLNKLGVPLQYLHLGSKIVFTTNSRV-VCGQM--EATMLNA 212 (294)
Q Consensus 143 ~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~--~~~~~~l 212 (294)
.....++ ...+.+.+ .+++-++|+|++... ..-..+...+..-..++.+|++|.+.. +...+ .+..+.+
T Consensus 91 ~~I~idq-IR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~ 169 (319)
T PRK08769 91 TEIVIEQ-VREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEF 169 (319)
T ss_pred ccccHHH-HHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeC
Confidence 0011222 22333333 356679999999763 344455555544444667777776543 32222 2333899
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHH
Q 048597 213 SPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVG 261 (294)
Q Consensus 213 ~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~ 261 (294)
.+++.+++.+.+... + .+ ...+..++..++|.|+.+..+.
T Consensus 170 ~~~~~~~~~~~L~~~-~-----~~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 170 KLPPAHEALAWLLAQ-G-----VS---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CCcCHHHHHHHHHHc-C-----CC---hHHHHHHHHHcCCCHHHHHHHh
Confidence 999999998888653 1 11 1235678999999998775543
No 130
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00062 Score=62.80 Aligned_cols=152 Identities=22% Similarity=0.222 Sum_probs=90.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHhh-----ChhHHHHHHHHHhCCCCCCcccCChHHHHHHHHHHh----ccCCeEEEEcc
Q 048597 99 RNRGIIGLYGTGGVGKTTLLKQRA-----NLKKIQADIGKKIGLSTKSWQENSFEDKALDIAGIL----SRKRFVLLLDD 169 (294)
Q Consensus 99 ~~~~vi~I~G~~GiGKTtLa~~v~-----~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~kr~LlvlDd 169 (294)
.....+.+.|++|+|||+||..+. ...++ ++.......++......+.+.+ +..--.||+||
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKi---------iSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDd 606 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKI---------ISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDD 606 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEE---------eChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcc
Confidence 467789999999999999998772 11111 1111122334444455555544 34457899999
Q ss_pred ccCccchhhhcCCcCC-------------CCCCcE--EEEecCChHHhhccCCc----e-eecCCCCH-HHHHHHHHHHh
Q 048597 170 IWEHINLNKLGVPLQY-------------LHLGSK--IVFTTNSRVVCGQMEAT----M-LNASPLRD-EEAWRLFEEAV 228 (294)
Q Consensus 170 v~~~~~~~~l~~~l~~-------------~~~gs~--iivTtr~~~v~~~~~~~----~-~~l~~L~~-~~~~~Lf~~~~ 228 (294)
+...-+|-.++..|.. ..+|-| |+-||....+...|+-. . |++..++. ++..+.++..-
T Consensus 607 iErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~n 686 (744)
T KOG0741|consen 607 IERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEELN 686 (744)
T ss_pred hhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHcc
Confidence 9887677665544321 122334 34455556776666532 2 88999976 66777666543
Q ss_pred -CCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHHHHHcC
Q 048597 229 -GRYVLDSHPDIPELAKTMAEECCCLPLALKTVGRAMRS 266 (294)
Q Consensus 229 -~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~~L~~ 266 (294)
+. +.....++.+...+| +-..|+.+-.++..
T Consensus 687 ~fs-----d~~~~~~~~~~~~~~--~~vgIKklL~lie~ 718 (744)
T KOG0741|consen 687 IFS-----DDEVRAIAEQLLSKK--VNVGIKKLLMLIEM 718 (744)
T ss_pred CCC-----cchhHHHHHHHhccc--cchhHHHHHHHHHH
Confidence 22 334556677777777 44455665555543
No 131
>PHA00729 NTP-binding motif containing protein
Probab=97.73 E-value=0.0001 Score=61.52 Aligned_cols=77 Identities=16% Similarity=0.123 Sum_probs=44.0
Q ss_pred HHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhH-----HHHHHHHHhCCCCCCcccCChHHHHHHHHHHhccC-C-
Q 048597 90 VWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKK-----IQADIGKKIGLSTKSWQENSFEDKALDIAGILSRK-R- 162 (294)
Q Consensus 90 l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-----i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k-r- 162 (294)
+++.+... ....|.|.|++|+||||||..+....- +... ...+.......-.+..++...+.....+. +
T Consensus 8 ~~~~l~~~--~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~--~~~~d~~~~~~fid~~~Ll~~L~~a~~~~~~~ 83 (226)
T PHA00729 8 IVSAYNNN--GFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTK--DDAWQYVQNSYFFELPDALEKIQDAIDNDYRI 83 (226)
T ss_pred HHHHHhcC--CeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccch--hhHHhcCCcEEEEEHHHHHHHHHHHHhcCCCC
Confidence 44444444 456799999999999999998854321 1000 00111111112345666777776655432 2
Q ss_pred eEEEEccc
Q 048597 163 FVLLLDDI 170 (294)
Q Consensus 163 ~LlvlDdv 170 (294)
=+||+||+
T Consensus 84 dlLIIDd~ 91 (226)
T PHA00729 84 PLIIFDDA 91 (226)
T ss_pred CEEEEeCC
Confidence 37899995
No 132
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.71 E-value=0.0019 Score=58.86 Aligned_cols=195 Identities=17% Similarity=0.138 Sum_probs=108.6
Q ss_pred cCceeehhHHHHHHHHHHhcC--CCCceEEEEEcCCCChHHHHHHHhhC---------------------hhHHHHHHHH
Q 048597 77 ERTVIRQELLLDRVWRFVTDQ--ERNRGIIGLYGTGGVGKTTLLKQRAN---------------------LKKIQADIGK 133 (294)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~~GiGKTtLa~~v~~---------------------~~~i~~~i~~ 133 (294)
+..++||+.++..+-.|+... ......+-|.|-+|.|||.+...++. ...++..|..
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~ 228 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFS 228 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHH
Confidence 456899999999999998764 33567889999999999999887711 1123344433
Q ss_pred Hh-CCCCCCcccCChHHHHHHHHHHhccC--CeEEEEccccCcc--chhhhcCCcC-CCCCCcEEEEecCChHH------
Q 048597 134 KI-GLSTKSWQENSFEDKALDIAGILSRK--RFVLLLDDIWEHI--NLNKLGVPLQ-YLHLGSKIVFTTNSRVV------ 201 (294)
Q Consensus 134 ~~-~~~~~~~~~~~~~~~~~~l~~~l~~k--r~LlvlDdv~~~~--~~~~l~~~l~-~~~~gs~iivTtr~~~v------ 201 (294)
.+ ..... .....+....+.....+. -+++|+|+++.-. .-..+...|. ..-.++++|+..--..+
T Consensus 229 ~~~q~~~s---~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 229 SLLQDLVS---PGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHhcC---CchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 33 11011 111245556666666544 4899999997521 1111111111 12235555543321111
Q ss_pred ---hhc-cCCce--eecCCCCHHHHHHHHHHHhCCCCC--CCCCCHHHHHHHHHHhCCCChHHHHHHHHHHcCCCCHHHH
Q 048597 202 ---CGQ-MEATM--LNASPLRDEEAWRLFEEAVGRYVL--DSHPDIPELAKTMAEECCCLPLALKTVGRAMRSISSIEEW 273 (294)
Q Consensus 202 ---~~~-~~~~~--~~l~~L~~~~~~~Lf~~~~~~~~~--~~~~~~~~~~~~I~~~c~GlPlai~~i~~~L~~~~~~~~w 273 (294)
... .+..+ +...|.+.++..++|..++..... ..+.-++-.+++++...|.+--|+.+.-+.+.- -..+|
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI--~E~e~ 383 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEI--AEIEK 383 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHH--HHHHH
Confidence 111 22233 889999999999999988754321 112223344455555555555555555544432 23445
Q ss_pred HHH
Q 048597 274 EHA 276 (294)
Q Consensus 274 ~~~ 276 (294)
+..
T Consensus 384 r~~ 386 (529)
T KOG2227|consen 384 RKI 386 (529)
T ss_pred hhc
Confidence 444
No 133
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.71 E-value=0.00055 Score=61.12 Aligned_cols=146 Identities=13% Similarity=0.073 Sum_probs=82.4
Q ss_pred ceee-hhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhh-----Ch---------hHHHHHHHHHhCC----CC
Q 048597 79 TVIR-QELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRA-----NL---------KKIQADIGKKIGL----ST 139 (294)
Q Consensus 79 ~~vG-r~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~-----~~---------~~i~~~i~~~~~~----~~ 139 (294)
.++| .+..++.+...+..+ .-.+...++|+.|+||||+|+.+. .. -..-+.+...-.. ..
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEec
Confidence 3566 666777787777655 235677999999999999998871 10 0111111110000 00
Q ss_pred CCcccCChHHHHHHHHHHh-----ccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEecCChH-Hhhcc--CCce
Q 048597 140 KSWQENSFEDKALDIAGIL-----SRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTTNSRV-VCGQM--EATM 209 (294)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~--~~~~ 209 (294)
........++... +.+.+ .+.+-++|+|++.. ....+.+...+.....++.+|++|.+.. +...+ .+..
T Consensus 85 ~~~~~i~id~ir~-l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~ 163 (329)
T PRK08058 85 PDGQSIKKDQIRY-LKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQV 163 (329)
T ss_pred cccccCCHHHHHH-HHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhcee
Confidence 0001122233322 22322 35566899999876 3345556666655455677777776543 22211 2333
Q ss_pred eecCCCCHHHHHHHHHH
Q 048597 210 LNASPLRDEEAWRLFEE 226 (294)
Q Consensus 210 ~~l~~L~~~~~~~Lf~~ 226 (294)
+++.+++.++..+.+..
T Consensus 164 i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 164 VEFRPLPPESLIQRLQE 180 (329)
T ss_pred eeCCCCCHHHHHHHHHH
Confidence 99999999998877764
No 134
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.69 E-value=0.0011 Score=62.22 Aligned_cols=169 Identities=17% Similarity=0.071 Sum_probs=85.8
Q ss_pred CceeehhHHHHHHHHHH---hc-----CCCCceEEEEEcCCCChHHHHHHHhhChhHHH---HHHHHHhCCCCCCcccCC
Q 048597 78 RTVIRQELLLDRVWRFV---TD-----QERNRGIIGLYGTGGVGKTTLLKQRANLKKIQ---ADIGKKIGLSTKSWQENS 146 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L---~~-----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~---~~i~~~~~~~~~~~~~~~ 146 (294)
..+.|.+..++.+.... .. +-...+-|.++|++|+|||.+|+.+.+....- -....-+. .....+
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~----~~vGes 303 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFG----GIVGES 303 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcc----cccChH
Confidence 35667765555444321 11 11245679999999999999999984321100 00000000 001112
Q ss_pred hHHHHHHHHHHhccCCeEEEEccccCcc----c------hhh----hcCCcCCCCCCcEEEEecCChHH-----hhccCC
Q 048597 147 FEDKALDIAGILSRKRFVLLLDDIWEHI----N------LNK----LGVPLQYLHLGSKIVFTTNSRVV-----CGQMEA 207 (294)
Q Consensus 147 ~~~~~~~l~~~l~~kr~LlvlDdv~~~~----~------~~~----l~~~l~~~~~gs~iivTtr~~~v-----~~~~~~ 207 (294)
...+...+...-...+++|++|++.... . -.. +...+.....+.-||.||.+..- ......
T Consensus 304 e~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRF 383 (489)
T CHL00195 304 ESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRF 383 (489)
T ss_pred HHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcC
Confidence 2222222322224678999999996421 0 001 11111122233345666655432 111233
Q ss_pred ce-eecCCCCHHHHHHHHHHHhCCCCCC--CCCCHHHHHHHHHHhCCCCh
Q 048597 208 TM-LNASPLRDEEAWRLFEEAVGRYVLD--SHPDIPELAKTMAEECCCLP 254 (294)
Q Consensus 208 ~~-~~l~~L~~~~~~~Lf~~~~~~~~~~--~~~~~~~~~~~I~~~c~GlP 254 (294)
.. +.+..-+.++-.++|..+....... ...+ ...+++.+.|+-
T Consensus 384 D~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~d----l~~La~~T~GfS 429 (489)
T CHL00195 384 DEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYD----IKKLSKLSNKFS 429 (489)
T ss_pred CeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccC----HHHHHhhcCCCC
Confidence 34 8888889999999998877543211 1222 356677777655
No 135
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.69 E-value=0.00022 Score=54.36 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=18.7
Q ss_pred eEEEEEcCCCChHHHHHHHh
Q 048597 102 GIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v 121 (294)
..+.|+|++|+||||+++.+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l 22 (148)
T smart00382 3 EVILIVGPPGSGKTTLARAL 22 (148)
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 67899999999999999988
No 136
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.69 E-value=0.00056 Score=68.01 Aligned_cols=45 Identities=29% Similarity=0.362 Sum_probs=35.8
Q ss_pred CceeehhHHHHHHHHHHhcC----CCCceEEEEEcCCCChHHHHHHHhh
Q 048597 78 RTVIRQELLLDRVWRFVTDQ----ERNRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..++|.+..++.|.+++... .....++.++|++|+|||++|+.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA 368 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIA 368 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 44789999999998877532 2234589999999999999999983
No 137
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.0015 Score=61.31 Aligned_cols=87 Identities=17% Similarity=0.122 Sum_probs=59.0
Q ss_pred ceeehhHHHHHHHHHHhcC----------CCCceEEEEEcCCCChHHHHHHHhhChhHHH------HHHHHHhCCCCCCc
Q 048597 79 TVIRQELLLDRVWRFVTDQ----------ERNRGIIGLYGTGGVGKTTLLKQRANLKKIQ------ADIGKKIGLSTKSW 142 (294)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~------~~i~~~~~~~~~~~ 142 (294)
.+-|.+..+.++++++..- =..++-|.+|||+|+|||.||+.+.+...+- .++.. ..
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivS-------Gv 263 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVS-------GV 263 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhc-------cc
Confidence 4668899999888887542 1357889999999999999999884433211 11111 11
Q ss_pred ccCChHHHHHHHHHHhccCCeEEEEccccC
Q 048597 143 QENSFEDKALDIAGILSRKRFVLLLDDIWE 172 (294)
Q Consensus 143 ~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~ 172 (294)
...++..+.+-+.+.-..-.|++++|++..
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 234455555555555677899999999975
No 138
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.66 E-value=0.00038 Score=68.87 Aligned_cols=46 Identities=30% Similarity=0.383 Sum_probs=37.5
Q ss_pred cCceeehhHHHHHHHHHHhcC----CCCceEEEEEcCCCChHHHHHHHhh
Q 048597 77 ERTVIRQELLLDRVWRFVTDQ----ERNRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
....+|.+..+++|+++|... .....++.++|++|+||||+++.+.
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia 370 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIA 370 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHH
Confidence 345799999999999988741 2245689999999999999999884
No 139
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.0033 Score=56.14 Aligned_cols=164 Identities=10% Similarity=0.018 Sum_probs=94.1
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHh-----hChh---------HHHHHHHHHhC-----CCCCCc-ccC
Q 048597 86 LLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR-----ANLK---------KIQADIGKKIG-----LSTKSW-QEN 145 (294)
Q Consensus 86 ~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v-----~~~~---------~i~~~i~~~~~-----~~~~~~-~~~ 145 (294)
.-+++.+.+..+ .-...+.+.|+.|+||+|+|..+ +... ..-+.|..... +..... ...
T Consensus 10 ~~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I 88 (334)
T PRK07993 10 DYEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSL 88 (334)
T ss_pred HHHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccC
Confidence 345666666654 24568889999999999999886 2110 01111111100 000000 112
Q ss_pred ChHHHHHHHHHHh-----ccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEecCChH-Hhhc--cCCceeecCCC
Q 048597 146 SFEDKALDIAGIL-----SRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTTNSRV-VCGQ--MEATMLNASPL 215 (294)
Q Consensus 146 ~~~~~~~~l~~~l-----~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~--~~~~~~~l~~L 215 (294)
..++.. .+.+.+ .+++-++|+|+... ...-..+...+..-..++.+|++|.+.. +... ..+..+.+.++
T Consensus 89 ~idqiR-~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~ 167 (334)
T PRK07993 89 GVDAVR-EVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPP 167 (334)
T ss_pred CHHHHH-HHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCC
Confidence 333332 344433 36677999999876 3455666666655555667777776543 3322 22334899999
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHH
Q 048597 216 RDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKT 259 (294)
Q Consensus 216 ~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 259 (294)
++++..+.+....+. + .+.+..++..++|.|..+..
T Consensus 168 ~~~~~~~~L~~~~~~-----~---~~~a~~~~~la~G~~~~Al~ 203 (334)
T PRK07993 168 PEQYALTWLSREVTM-----S---QDALLAALRLSAGAPGAALA 203 (334)
T ss_pred CHHHHHHHHHHccCC-----C---HHHHHHHHHHcCCCHHHHHH
Confidence 999998877653211 1 13357889999999975443
No 140
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.64 E-value=0.0002 Score=60.76 Aligned_cols=21 Identities=48% Similarity=0.661 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-.+++|+||.|.|||||++.+
T Consensus 30 G~~~~iiGPNGaGKSTLlK~i 50 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAI 50 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 379999999999999999999
No 141
>PRK08118 topology modulation protein; Reviewed
Probab=97.61 E-value=8.2e-05 Score=59.71 Aligned_cols=67 Identities=21% Similarity=0.316 Sum_probs=37.2
Q ss_pred eEEEEEcCCCChHHHHHHHhhChhHHH-HHHHHHhCCCCCCcccCChHHHHHHHHHHhccCCeEEEEccccC
Q 048597 102 GIIGLYGTGGVGKTTLLKQRANLKKIQ-ADIGKKIGLSTKSWQENSFEDKALDIAGILSRKRFVLLLDDIWE 172 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~~~~~i~-~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~ 172 (294)
..|.|+|++|+||||||+.+++...+. -++...++.+. ....+.++....+...+.+.. .|+|....
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~--w~~~~~~~~~~~~~~~~~~~~--wVidG~~~ 69 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPN--WEGVPKEEQITVQNELVKEDE--WIIDGNYG 69 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccC--CcCCCHHHHHHHHHHHhcCCC--EEEeCCcc
Confidence 358999999999999999996543322 12222222211 122233344444455555554 46677643
No 142
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.61 E-value=0.0013 Score=65.05 Aligned_cols=167 Identities=16% Similarity=0.076 Sum_probs=87.2
Q ss_pred ceeehhHHHHHHHHHHhcC-----------CCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCC----Ccc
Q 048597 79 TVIRQELLLDRVWRFVTDQ-----------ERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTK----SWQ 143 (294)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~----~~~ 143 (294)
.+.|.+..++.+.+++... -...+.|.++|++|+||||||+.+.+..... + +.+... ...
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~--~---i~i~~~~i~~~~~ 253 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY--F---ISINGPEIMSKYY 253 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe--E---EEEecHHHhcccc
Confidence 4789999888888776431 1234678999999999999999884422100 0 000000 001
Q ss_pred cCChHHHHHHHHHHhccCCeEEEEccccCcc--------c-----hhhhcCCcCC-CCCCcEEEE-ecCChH-H--h-hc
Q 048597 144 ENSFEDKALDIAGILSRKRFVLLLDDIWEHI--------N-----LNKLGVPLQY-LHLGSKIVF-TTNSRV-V--C-GQ 204 (294)
Q Consensus 144 ~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~--------~-----~~~l~~~l~~-~~~gs~iiv-Ttr~~~-v--~-~~ 204 (294)
......+...+.........+|+|||+.... . ...+...+.. ...+..+++ +|.... + + ..
T Consensus 254 g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r 333 (733)
T TIGR01243 254 GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRR 333 (733)
T ss_pred cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhC
Confidence 1112223333333335567899999985411 0 1112111111 122334444 444332 1 1 11
Q ss_pred c-CCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCCh
Q 048597 205 M-EATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLP 254 (294)
Q Consensus 205 ~-~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 254 (294)
. .... +.+...+.++-.+++............. ....+++.+.|.-
T Consensus 334 ~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~----~l~~la~~t~G~~ 381 (733)
T TIGR01243 334 PGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDV----DLDKLAEVTHGFV 381 (733)
T ss_pred chhccEEEEeCCcCHHHHHHHHHHHhcCCCCcccc----CHHHHHHhCCCCC
Confidence 1 1223 7788888888888888655332211111 2466778888865
No 143
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.61 E-value=0.0012 Score=66.37 Aligned_cols=44 Identities=32% Similarity=0.365 Sum_probs=35.5
Q ss_pred CceeehhHHHHHHHHHHhcC-------CCCceEEEEEcCCCChHHHHHHHh
Q 048597 78 RTVIRQELLLDRVWRFVTDQ-------ERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
..++|.+..++.+...+... .....++.++|+.|+|||+||+.+
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aL 618 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKAL 618 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHH
Confidence 46899999988888888642 122357899999999999999998
No 144
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.0003 Score=68.41 Aligned_cols=103 Identities=25% Similarity=0.319 Sum_probs=65.8
Q ss_pred cCceeehhHHHHHHHHHHhc-------CCCCceEEEEEcCCCChHHHHHHHh-------------hChhHHHH--HHHHH
Q 048597 77 ERTVIRQELLLDRVWRFVTD-------QERNRGIIGLYGTGGVGKTTLLKQR-------------ANLKKIQA--DIGKK 134 (294)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~-------~~~~~~vi~I~G~~GiGKTtLa~~v-------------~~~~~i~~--~i~~~ 134 (294)
...++|.++.+..+.+.+.. +.....+....||.|+|||.||+.+ +++.+-.. .+..-
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrL 569 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRL 569 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHH
Confidence 35689999999999998864 2345678888999999999999998 33333322 22333
Q ss_pred hCCCCCCcccCChHHHHHHHHHHhccCCe-EEEEccccC--ccchhhhcCCc
Q 048597 135 IGLSTKSWQENSFEDKALDIAGILSRKRF-VLLLDDIWE--HINLNKLGVPL 183 (294)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlvlDdv~~--~~~~~~l~~~l 183 (294)
+|.+.. +-..+. .-.|-+.++.++| +|.||++.. ++-++-+...|
T Consensus 570 IGaPPG-YVGyee---GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVl 617 (786)
T COG0542 570 IGAPPG-YVGYEE---GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVL 617 (786)
T ss_pred hCCCCC-Cceecc---ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHh
Confidence 343322 222221 2345666778877 888999976 34444444444
No 145
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.013 Score=51.93 Aligned_cols=179 Identities=9% Similarity=0.043 Sum_probs=101.4
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHh-----hChh--------HHHHHHHHHhC-----CCCC-CcccCC
Q 048597 86 LLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR-----ANLK--------KIQADIGKKIG-----LSTK-SWQENS 146 (294)
Q Consensus 86 ~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v-----~~~~--------~i~~~i~~~~~-----~~~~-~~~~~~ 146 (294)
....+...+..+ .-...+.+.|+.|+||+++|..+ +... ..-..+...-. +... ......
T Consensus 11 ~~~~l~~~~~~~-rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~ 89 (319)
T PRK06090 11 VWQNWKAGLDAG-RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSIT 89 (319)
T ss_pred HHHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCC
Confidence 344555555544 24568999999999999999887 1111 01111111100 0000 001223
Q ss_pred hHHHHHHHHHHh-----ccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEecCChH-Hhhcc--CCceeecCCCC
Q 048597 147 FEDKALDIAGIL-----SRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTTNSRV-VCGQM--EATMLNASPLR 216 (294)
Q Consensus 147 ~~~~~~~l~~~l-----~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~--~~~~~~l~~L~ 216 (294)
.++.. .+.+.+ .+++-++|+|++.. ....+.+...+.....++.+|++|.+.. +...+ .+..+.+.+++
T Consensus 90 vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~ 168 (319)
T PRK06090 90 VEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPS 168 (319)
T ss_pred HHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCC
Confidence 34333 344443 34566889999976 4566666666655555666776666543 32222 23349999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 048597 217 DEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVGRAMRSISSIEEWEHAIKIIL 281 (294)
Q Consensus 217 ~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~~L~~~~~~~~w~~~l~~l~ 281 (294)
.++..+.+.... . + ....++..++|.|+.+..+. .. ...+.++..+..+.
T Consensus 169 ~~~~~~~L~~~~------~-~----~~~~~l~l~~G~p~~A~~~~---~~-~~~~~~~~~~~~l~ 218 (319)
T PRK06090 169 TAQAMQWLKGQG------I-T----VPAYALKLNMGSPLKTLAMM---KE-GGLEKYHKLERQLV 218 (319)
T ss_pred HHHHHHHHHHcC------C-c----hHHHHHHHcCCCHHHHHHHh---CC-CcHHHHHHHHHHHH
Confidence 999988886531 1 1 13567899999999876553 22 23444555555554
No 146
>PRK07261 topology modulation protein; Provisional
Probab=97.59 E-value=4.7e-05 Score=61.37 Aligned_cols=66 Identities=23% Similarity=0.364 Sum_probs=39.5
Q ss_pred EEEEEcCCCChHHHHHHHhhChhHHHH-HHHHHhCCCCCCcccCChHHHHHHHHHHhccCCeEEEEccccC
Q 048597 103 IIGLYGTGGVGKTTLLKQRANLKKIQA-DIGKKIGLSTKSWQENSFEDKALDIAGILSRKRFVLLLDDIWE 172 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v~~~~~i~~-~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~ 172 (294)
.|.|+|++|+||||||+.+.....+.. ++....+. ......+.++....+.+.+.+.+ .|+|....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--wIidg~~~ 68 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ--PNWQERDDDDMIADISNFLLKHD--WIIDGNYS 68 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec--cccccCCHHHHHHHHHHHHhCCC--EEEcCcch
Confidence 589999999999999998832211100 00000111 11234456677777777787666 67787754
No 147
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.0027 Score=56.07 Aligned_cols=194 Identities=14% Similarity=0.132 Sum_probs=110.5
Q ss_pred ceeehhHHHHHHHHHHhcC-----------CCCceEEEEEcCCCChHHHHHHHhhChhH-----HH-HHHHHHhCCCCCC
Q 048597 79 TVIRQELLLDRVWRFVTDQ-----------ERNRGIIGLYGTGGVGKTTLLKQRANLKK-----IQ-ADIGKKIGLSTKS 141 (294)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-----i~-~~i~~~~~~~~~~ 141 (294)
.+-|.++.+++|-+.+.-+ =..++-|.++||+|.|||-||++|.+... +. .++.+.. +..
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKY-iGE-- 228 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKY-IGE-- 228 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHH-hcc--
Confidence 3557888888887776432 13678999999999999999999955332 11 1111111 111
Q ss_pred cccCChHHHHHHHHHHhc-cCCeEEEEccccCcc----------c------hhhhcCCcC--CCCCCcEEEEecCChHHh
Q 048597 142 WQENSFEDKALDIAGILS-RKRFVLLLDDIWEHI----------N------LNKLGVPLQ--YLHLGSKIVFTTNSRVVC 202 (294)
Q Consensus 142 ~~~~~~~~~~~~l~~~l~-~kr~LlvlDdv~~~~----------~------~~~l~~~l~--~~~~gs~iivTtr~~~v~ 202 (294)
-..+...+++.-+ ...++|++|++.... + .-++...+. +.....+||..|...++.
T Consensus 229 -----GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~L 303 (406)
T COG1222 229 -----GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDIL 303 (406)
T ss_pred -----chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcccc
Confidence 1234445555444 567999999987410 0 111111111 123346888888765542
Q ss_pred -----hccCCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCCh----HHHHHHHHHHcC--C---
Q 048597 203 -----GQMEATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLP----LALKTVGRAMRS--I--- 267 (294)
Q Consensus 203 -----~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP----lai~~i~~~L~~--~--- 267 (294)
....-.. +++..-+.+--.++|+-|...-.....-++ ..+++.|.|.- -|+.+=|++++- .
T Consensus 304 DPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~ 379 (406)
T COG1222 304 DPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFSGADLKAICTEAGMFAIRERRDE 379 (406)
T ss_pred ChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCchHHHHHHHHHHhHHHHHhccCe
Confidence 1122233 777755666667777777655443344455 45666666665 455555665433 2
Q ss_pred CCHHHHHHHHHHHHhcC
Q 048597 268 SSIEEWEHAIKIILRYG 284 (294)
Q Consensus 268 ~~~~~w~~~l~~l~~~~ 284 (294)
-+.++..++.+.+-...
T Consensus 380 Vt~~DF~~Av~KV~~~~ 396 (406)
T COG1222 380 VTMEDFLKAVEKVVKKK 396 (406)
T ss_pred ecHHHHHHHHHHHHhcc
Confidence 24567777766665543
No 148
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.57 E-value=7.5e-05 Score=66.50 Aligned_cols=45 Identities=22% Similarity=0.374 Sum_probs=38.7
Q ss_pred cCceeehhHHHHHHHHHHhcC----CCCceEEEEEcCCCChHHHHHHHh
Q 048597 77 ERTVIRQELLLDRVWRFVTDQ----ERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...++|.++.++++++++... ....+++.++||+|+||||||+.+
T Consensus 50 ~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~L 98 (361)
T smart00763 50 DHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECL 98 (361)
T ss_pred chhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHH
Confidence 347899999999999999763 235689999999999999999998
No 149
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.57 E-value=0.00084 Score=53.56 Aligned_cols=133 Identities=17% Similarity=0.136 Sum_probs=71.7
Q ss_pred ehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhC-----h--------hHHHHHHHHHhCC-----CCCCc-
Q 048597 82 RQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRAN-----L--------KKIQADIGKKIGL-----STKSW- 142 (294)
Q Consensus 82 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~-----~--------~~i~~~i~~~~~~-----~~~~~- 142 (294)
|.+...+.|.+.+..+ .-...+.++|+.|+||+|+|..+.. . -..-..+...... .....
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~ 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK 79 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc
Confidence 4556677777777665 2345789999999999999988711 0 1112222211110 01100
Q ss_pred ccCChHHHHHHHHHHh-----ccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEecCChHH-h-hcc-CCceeec
Q 048597 143 QENSFEDKALDIAGIL-----SRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTTNSRVV-C-GQM-EATMLNA 212 (294)
Q Consensus 143 ~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTtr~~~v-~-~~~-~~~~~~l 212 (294)
.....++.. .+.+.+ .++.-++|+|++.. .+....+...+.....++.+|++|++..- . +.. .+..+++
T Consensus 80 ~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~ 158 (162)
T PF13177_consen 80 KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRF 158 (162)
T ss_dssp SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE
T ss_pred chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEec
Confidence 122344443 555544 34567999999986 45677776666666667888888877542 1 211 2222666
Q ss_pred CCCC
Q 048597 213 SPLR 216 (294)
Q Consensus 213 ~~L~ 216 (294)
.+||
T Consensus 159 ~~ls 162 (162)
T PF13177_consen 159 RPLS 162 (162)
T ss_dssp ----
T ss_pred CCCC
Confidence 6654
No 150
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.55 E-value=0.012 Score=52.69 Aligned_cols=90 Identities=17% Similarity=0.097 Sum_probs=58.6
Q ss_pred cCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEecCCh-HHhhcc--CCceeecCCCCHHHHHHHHHHHhCCCCCC
Q 048597 160 RKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTTNSR-VVCGQM--EATMLNASPLRDEEAWRLFEEAVGRYVLD 234 (294)
Q Consensus 160 ~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 234 (294)
+++-++|+|+.+. ....+.+...+..-..++.+|++|.+. .+...+ .+..+.+.+++.++..+.+... +.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~---- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GV---- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CC----
Confidence 5566889999976 456777766666555567666666554 332221 2334999999999999888764 11
Q ss_pred CCCCHHHHHHHHHHhCCCChHHHHHH
Q 048597 235 SHPDIPELAKTMAEECCCLPLALKTV 260 (294)
Q Consensus 235 ~~~~~~~~~~~I~~~c~GlPlai~~i 260 (294)
+. ....+..++|.|+.+..+
T Consensus 206 --~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 --AD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred --Ch----HHHHHHHcCCCHHHHHHH
Confidence 11 134577889999755543
No 151
>PRK08116 hypothetical protein; Validated
Probab=97.54 E-value=0.00036 Score=60.40 Aligned_cols=22 Identities=41% Similarity=0.370 Sum_probs=19.3
Q ss_pred eEEEEEcCCCChHHHHHHHhhC
Q 048597 102 GIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
..+.++|+.|+|||.||..+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~ 136 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIAN 136 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998843
No 152
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.54 E-value=0.00015 Score=61.85 Aligned_cols=25 Identities=32% Similarity=0.193 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCChHHHHHHHhhCh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANL 124 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~ 124 (294)
.-..++|+|++|+|||||++.+++.
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~ 39 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANA 39 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3478999999999999999999543
No 153
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00089 Score=55.54 Aligned_cols=61 Identities=13% Similarity=0.197 Sum_probs=39.0
Q ss_pred HHHHHHHHHhccCCeEEEEccccCccchhhhcCC---cC-CCCCCcEEEEecCChHHhhccCCce
Q 048597 149 DKALDIAGILSRKRFVLLLDDIWEHINLNKLGVP---LQ-YLHLGSKIVFTTNSRVVCGQMEATM 209 (294)
Q Consensus 149 ~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~l~~~---l~-~~~~gs~iivTtr~~~v~~~~~~~~ 209 (294)
....+|.+.+--++-+.+||+..+.-+.+.+... +. -...|+-+++.|....++.......
T Consensus 150 kKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~ 214 (251)
T COG0396 150 KKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDK 214 (251)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCE
Confidence 3444555566667889999999886555544211 11 1233667888899888887775544
No 154
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.53 E-value=0.00026 Score=59.47 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+|+|+|++|+|||||.+.+
T Consensus 28 ~GEfvsilGpSGcGKSTLLrii 49 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLI 49 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4479999999999999999999
No 155
>PRK08181 transposase; Validated
Probab=97.53 E-value=0.00026 Score=61.15 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=18.4
Q ss_pred eEEEEEcCCCChHHHHHHHh
Q 048597 102 GIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v 121 (294)
.-+.++|++|+|||.||..+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Ai 126 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAI 126 (269)
T ss_pred ceEEEEecCCCcHHHHHHHH
Confidence 45999999999999999988
No 156
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.52 E-value=0.0027 Score=54.13 Aligned_cols=199 Identities=16% Similarity=0.179 Sum_probs=109.0
Q ss_pred eeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHh----hC--hhHHHHH---HH---------------HHh
Q 048597 80 VIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR----AN--LKKIQAD---IG---------------KKI 135 (294)
Q Consensus 80 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v----~~--~~~i~~~---i~---------------~~~ 135 (294)
+.++++....+......+ ..+-..++||+|.||-|.+..+ |. ..++.-. |. ..+
T Consensus 15 l~~~~e~~~~Lksl~~~~--d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHl 92 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSSTG--DFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHL 92 (351)
T ss_pred cccHHHHHHHHHHhcccC--CCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceE
Confidence 566666666666655533 6889999999999999987655 22 1111100 00 000
Q ss_pred CCCCCCcccCChHHHHHHHHHHh-------cc-CCe-EEEEccccC--ccchhhhcCCcCCCCCCcEEEEecCChH-Hhh
Q 048597 136 GLSTKSWQENSFEDKALDIAGIL-------SR-KRF-VLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTTNSRV-VCG 203 (294)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~l~~~l-------~~-kr~-LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~ 203 (294)
.+..++....|..-.++.+++.- .+ +.| ++|+-.+.+ .+.-..++.....=...+|+|+...+-. +..
T Consensus 93 EitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIe 172 (351)
T KOG2035|consen 93 EITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIE 172 (351)
T ss_pred EeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchh
Confidence 01111112222222222232221 22 333 455666554 2333333333322233567776654422 222
Q ss_pred ccCCce--eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHHHHHcCC----------CCHH
Q 048597 204 QMEATM--LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVGRAMRSI----------SSIE 271 (294)
Q Consensus 204 ~~~~~~--~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~~L~~~----------~~~~ 271 (294)
.+.... +++...+++|....+++.+..++...+ .+++++|+++|+|.---+..+-..++.+ -..-
T Consensus 173 pIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~ 249 (351)
T KOG2035|consen 173 PIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKP 249 (351)
T ss_pred HHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCc
Confidence 222222 889999999999999988866553332 5889999999999765555544444432 1245
Q ss_pred HHHHHHHHHHhc
Q 048597 272 EWEHAIKIILRY 283 (294)
Q Consensus 272 ~w~~~l~~l~~~ 283 (294)
+|+-++.++.+.
T Consensus 250 dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 250 DWEIYIQEIARV 261 (351)
T ss_pred cHHHHHHHHHHH
Confidence 899888887764
No 157
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.52 E-value=6.9e-05 Score=56.47 Aligned_cols=19 Identities=42% Similarity=0.588 Sum_probs=18.2
Q ss_pred EEEEEcCCCChHHHHHHHh
Q 048597 103 IIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v 121 (294)
+|+|.|++|+||||+|+.+
T Consensus 1 vI~I~G~~gsGKST~a~~L 19 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKEL 19 (121)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHH
Confidence 6899999999999999998
No 158
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.51 E-value=0.00049 Score=67.69 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=36.0
Q ss_pred CceeehhHHHHHHHHHHhcC-------CCCceEEEEEcCCCChHHHHHHHh
Q 048597 78 RTVIRQELLLDRVWRFVTDQ-------ERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
..++|.++.++.|...+... ......+.++||+|+|||+||+.+
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~L 508 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQL 508 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHH
Confidence 45899999999999888632 223467999999999999999988
No 159
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.51 E-value=0.0005 Score=69.03 Aligned_cols=45 Identities=29% Similarity=0.363 Sum_probs=36.7
Q ss_pred cCceeehhHHHHHHHHHHhcC-------CCCceEEEEEcCCCChHHHHHHHh
Q 048597 77 ERTVIRQELLLDRVWRFVTDQ-------ERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...++|.+..++.+...+... .....++.++|++|+|||++|+.+
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~L 615 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKAL 615 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 356899999999999988752 123457889999999999999998
No 160
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.49 E-value=0.0056 Score=58.42 Aligned_cols=183 Identities=16% Similarity=0.125 Sum_probs=108.6
Q ss_pred cCceeehhHHHHHHHHHHhcC--C-CCceEEEEEcCCCChHHHHHHHh--------------------------hChhHH
Q 048597 77 ERTVIRQELLLDRVWRFVTDQ--E-RNRGIIGLYGTGGVGKTTLLKQR--------------------------ANLKKI 127 (294)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~--~-~~~~vi~I~G~~GiGKTtLa~~v--------------------------~~~~~i 127 (294)
+..+-+|+.+..+|-.++..- . ...+.+-|.|-+|+|||..+..| ....++
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREI 474 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHH
Confidence 345678999999999988652 2 34559999999999999999888 223334
Q ss_pred HHHHHHHhCCCCCCcccCChHHHHHHHHHHh-----ccCCeEEEEccccCccc--hhhhcCCcC-CCCCCcEEEEecC-C
Q 048597 128 QADIGKKIGLSTKSWQENSFEDKALDIAGIL-----SRKRFVLLLDDIWEHIN--LNKLGVPLQ-YLHLGSKIVFTTN-S 198 (294)
Q Consensus 128 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~~~--~~~l~~~l~-~~~~gs~iivTtr-~ 198 (294)
...|...+.... .......+.|..++ +.+.+++++|++..... -+-+...|. ....+|+++|-+= +
T Consensus 475 Y~~I~~~lsg~~-----~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 475 YEKIWEALSGER-----VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHHhcccCc-----ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc
Confidence 445555443211 12222333344433 24568899998754211 111111111 1234566654431 1
Q ss_pred ----------hHHhhccCCceeecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHHHHH
Q 048597 199 ----------RVVCGQMEATMLNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVGRAM 264 (294)
Q Consensus 199 ----------~~v~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~~L 264 (294)
..++..++-..+..+|.+.++-.++...++.....-.+.-.+-++++|+...|..-.|+...-+..
T Consensus 550 TmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred cccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 123555566568899999998888887776444322333445566788877777777666655443
No 161
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0004 Score=67.54 Aligned_cols=143 Identities=18% Similarity=0.242 Sum_probs=80.4
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhh------ChhHHHH-------HHHHHhCCCCCCccc
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRA------NLKKIQA-------DIGKKIGLSTKSWQE 144 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~------~~~~i~~-------~i~~~~~~~~~~~~~ 144 (294)
+.++||++++.++++.|.....+.+ .++|.+|+|||+++.-+. +....++ ++..-+ .+..+ .
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~Lv--AGaky-R 244 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLV--AGAKY-R 244 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHh--ccccc-c
Confidence 3479999999999999987643433 368999999999875541 1111110 011100 11111 2
Q ss_pred CChHHHHHHHHHHh-ccCCeEEEEccccCc----------cchhhh-cCCcCCCCCCcEEEEecCChH-------Hhhcc
Q 048597 145 NSFEDKALDIAGIL-SRKRFVLLLDDIWEH----------INLNKL-GVPLQYLHLGSKIVFTTNSRV-------VCGQM 205 (294)
Q Consensus 145 ~~~~~~~~~l~~~l-~~kr~LlvlDdv~~~----------~~~~~l-~~~l~~~~~gs~iivTtr~~~-------v~~~~ 205 (294)
-+.++....+.+.+ +..+.+|++|.+++. -+-..+ ..+|..+. --.|=.||-++. .|-..
T Consensus 245 GeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe-L~~IGATT~~EYRk~iEKD~AL~R 323 (786)
T COG0542 245 GEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE-LRCIGATTLDEYRKYIEKDAALER 323 (786)
T ss_pred CcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC-eEEEEeccHHHHHHHhhhchHHHh
Confidence 23444444444444 345899999999862 112222 22332222 124445554332 12233
Q ss_pred CCceeecCCCCHHHHHHHHHH
Q 048597 206 EATMLNASPLRDEEAWRLFEE 226 (294)
Q Consensus 206 ~~~~~~l~~L~~~~~~~Lf~~ 226 (294)
..+++.+...+.+++..+++-
T Consensus 324 RFQ~V~V~EPs~e~ti~ILrG 344 (786)
T COG0542 324 RFQKVLVDEPSVEDTIAILRG 344 (786)
T ss_pred cCceeeCCCCCHHHHHHHHHH
Confidence 344588999999999888864
No 162
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.47 E-value=0.00056 Score=68.47 Aligned_cols=45 Identities=27% Similarity=0.302 Sum_probs=35.8
Q ss_pred cCceeehhHHHHHHHHHHhcC-------CCCceEEEEEcCCCChHHHHHHHh
Q 048597 77 ERTVIRQELLLDRVWRFVTDQ-------ERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...++|.+..++.+...+... ......+.++||.|+|||+||+.+
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~L 559 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKAL 559 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHH
Confidence 356899999999998888632 223456789999999999999988
No 163
>PRK06696 uridine kinase; Validated
Probab=97.44 E-value=0.00022 Score=59.99 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=33.1
Q ss_pred ehhHHHHHHHHHHhc-CCCCceEEEEEcCCCChHHHHHHHhh
Q 048597 82 RQELLLDRVWRFVTD-QERNRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 82 Gr~~~~~~l~~~L~~-~~~~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.|+..+++|.+.+.. ......+|+|.|++|+||||||+.+.
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~ 43 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELA 43 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHH
Confidence 366677788887764 34478899999999999999998884
No 164
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00061 Score=64.88 Aligned_cols=148 Identities=15% Similarity=0.060 Sum_probs=78.9
Q ss_pred CceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHHHHHHHH----HHhccCCeEEEEccccCc--
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFEDKALDIA----GILSRKRFVLLLDDIWEH-- 173 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~----~~l~~kr~LlvlDdv~~~-- 173 (294)
...-|.|.|+.|+|||+||+.+++-.. ...+....-.+++.......+..+..+. +.+...+-+|||||++..
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~ 508 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLAS 508 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhc
Confidence 456899999999999999999977555 3333322223333333334444443333 334678999999999641
Q ss_pred ------cchhh-----------hcCCcCCCCCCcE--EEEecCChHHh-----hccCCce-eecCCCCHHHHHHHHHHHh
Q 048597 174 ------INLNK-----------LGVPLQYLHLGSK--IVFTTNSRVVC-----GQMEATM-LNASPLRDEEAWRLFEEAV 228 (294)
Q Consensus 174 ------~~~~~-----------l~~~l~~~~~gs~--iivTtr~~~v~-----~~~~~~~-~~l~~L~~~~~~~Lf~~~~ 228 (294)
.+|.. +...+ ...+.+ +|.|..+..-. ...-.+. ..|.++...+-.++++...
T Consensus 509 ~s~~e~~q~~~~~~rla~flnqvi~~y--~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~ 586 (952)
T KOG0735|consen 509 ASSNENGQDGVVSERLAAFLNQVIKIY--LKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIF 586 (952)
T ss_pred cCcccCCcchHHHHHHHHHHHHHHHHH--HccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHH
Confidence 12221 11111 223444 34444432211 1111122 7788888877777766544
Q ss_pred CCCCCCCCCCHHHHHHHHHHhCCCC
Q 048597 229 GRYVLDSHPDIPELAKTMAEECCCL 253 (294)
Q Consensus 229 ~~~~~~~~~~~~~~~~~I~~~c~Gl 253 (294)
....... ..+...-+..+|+|.
T Consensus 587 s~~~~~~---~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 587 SKNLSDI---TMDDLDFLSVKTEGY 608 (952)
T ss_pred Hhhhhhh---hhHHHHHHHHhcCCc
Confidence 3222111 112223388888884
No 165
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.42 E-value=0.00048 Score=56.73 Aligned_cols=70 Identities=20% Similarity=0.215 Sum_probs=41.0
Q ss_pred ceEEEEEcCCCChHHHHHHHh------------------h--ChhHHHHHHHHHhCCCCCCc-ccCChHHHHHHHHHHhc
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR------------------A--NLKKIQADIGKKIGLSTKSW-QENSFEDKALDIAGILS 159 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v------------------~--~~~~i~~~i~~~~~~~~~~~-~~~~~~~~~~~l~~~l~ 159 (294)
+++|.++|+.|+||||.+-++ | .-.+.++.+.+.++++.... ...+.........+.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 479999999999999887777 2 12245567777777643211 12234444433333333
Q ss_pred c-CCeEEEEccc
Q 048597 160 R-KRFVLLLDDI 170 (294)
Q Consensus 160 ~-kr~LlvlDdv 170 (294)
. +.=++++|-.
T Consensus 81 ~~~~D~vlIDT~ 92 (196)
T PF00448_consen 81 KKGYDLVLIDTA 92 (196)
T ss_dssp HTTSSEEEEEE-
T ss_pred hcCCCEEEEecC
Confidence 3 3347777865
No 166
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.42 E-value=0.0017 Score=61.29 Aligned_cols=43 Identities=23% Similarity=0.346 Sum_probs=33.4
Q ss_pred ceeehhHHHHHHHHHHhcC---CCCceEEEEEcCCCChHHHHHHHh
Q 048597 79 TVIRQELLLDRVWRFVTDQ---ERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.++--.+-++++..||... ....+++.+.||+|+||||.++.+
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~L 65 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVL 65 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHH
Confidence 3444456788888888752 234679999999999999999888
No 167
>PRK06526 transposase; Provisional
Probab=97.41 E-value=0.00032 Score=60.21 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=18.9
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
..-+.++|++|+|||+||..+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al 118 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGL 118 (254)
T ss_pred CceEEEEeCCCCchHHHHHHH
Confidence 356899999999999999988
No 168
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.41 E-value=0.00075 Score=57.51 Aligned_cols=22 Identities=45% Similarity=0.681 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+||+|+|||||.+.+
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l 48 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCL 48 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4589999999999999999999
No 169
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.41 E-value=0.00044 Score=63.50 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-..++|+||+|+|||||++.+
T Consensus 362 G~~lgIIGPSgSGKSTLaR~l 382 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLL 382 (580)
T ss_pred CceEEEECCCCccHHHHHHHH
Confidence 479999999999999999998
No 170
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.40 E-value=0.00043 Score=55.28 Aligned_cols=100 Identities=23% Similarity=0.287 Sum_probs=54.1
Q ss_pred CceEEEEEcCCCChHHHHHHHhhChhH------------HH-----HHHHHHhCCCCCCcccCChHHHHHHHHHHhccCC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANLKK------------IQ-----ADIGKKIGLSTKSWQENSFEDKALDIAGILSRKR 162 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~~~------------i~-----~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr 162 (294)
.-.+++|.|++|+|||||++.+..... +. ......++... +-+.-+...-.+...+-.++
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~---qLS~G~~qrl~laral~~~p 101 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVY---QLSVGERQMVEIARALARNA 101 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEE---ecCHHHHHHHHHHHHHhcCC
Confidence 347999999999999999999933221 10 00111111100 01111222334555666778
Q ss_pred eEEEEccccCc---cchhhhcCCcCC-CCCCcEEEEecCChHHh
Q 048597 163 FVLLLDDIWEH---INLNKLGVPLQY-LHLGSKIVFTTNSRVVC 202 (294)
Q Consensus 163 ~LlvlDdv~~~---~~~~~l~~~l~~-~~~gs~iivTtr~~~v~ 202 (294)
-++++|+.-+. .....+...+.. ...|..||++|.+....
T Consensus 102 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 102 RLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 89999998652 222222222211 12366788888886643
No 171
>PRK06762 hypothetical protein; Provisional
Probab=97.39 E-value=0.0013 Score=52.47 Aligned_cols=21 Identities=43% Similarity=0.559 Sum_probs=19.3
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
+.+|.|.|++|+||||+|+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L 22 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQL 22 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999987
No 172
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.38 E-value=0.0011 Score=56.08 Aligned_cols=164 Identities=18% Similarity=0.219 Sum_probs=90.9
Q ss_pred CceeehhHHHH---HHHHHHhcC----CCCceEEEEEcCCCChHHHHHHHhhChhHH-------HHHHHHHhCCCCCCcc
Q 048597 78 RTVIRQELLLD---RVWRFVTDQ----ERNRGIIGLYGTGGVGKTTLLKQRANLKKI-------QADIGKKIGLSTKSWQ 143 (294)
Q Consensus 78 ~~~vGr~~~~~---~l~~~L~~~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i-------~~~i~~~~~~~~~~~~ 143 (294)
+.+||.++... -|+..|.++ +-.++-|..+||+|.|||.+|+.+.+..++ .+-|...+|
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVG------- 193 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVG------- 193 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhh-------
Confidence 34688775443 456666654 346789999999999999999999665542 122222221
Q ss_pred cCChHHHHHHHHHHh-ccCCeEEEEccccCc----------cchhhhcCCc----C--CCCCCcEEEEecCChHHhh---
Q 048597 144 ENSFEDKALDIAGIL-SRKRFVLLLDDIWEH----------INLNKLGVPL----Q--YLHLGSKIVFTTNSRVVCG--- 203 (294)
Q Consensus 144 ~~~~~~~~~~l~~~l-~~kr~LlvlDdv~~~----------~~~~~l~~~l----~--~~~~gs~iivTtr~~~v~~--- 203 (294)
+-......+.+.- +.-.|++++|++... .+...+..+| . ..+.|..-|..|.+.+...
T Consensus 194 --dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~ai 271 (368)
T COG1223 194 --DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAI 271 (368)
T ss_pred --hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHH
Confidence 1111222222222 456899999988641 1222222221 1 1334555566665554422
Q ss_pred ccCCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCCh
Q 048597 204 QMEATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLP 254 (294)
Q Consensus 204 ~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 254 (294)
...... ++...-++++-..++...+-.-....... .+.++++.+|+.
T Consensus 272 RsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~S 319 (368)
T COG1223 272 RSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGMS 319 (368)
T ss_pred HhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCCC
Confidence 112222 77777788888888887763221111222 366777777764
No 173
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.38 E-value=0.00093 Score=54.97 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=33.7
Q ss_pred HHHHHHHhccCCeEEEEccccCccc---hhhhcCCcC-CCCCCcEEEEecCChHHhhccCC
Q 048597 151 ALDIAGILSRKRFVLLLDDIWEHIN---LNKLGVPLQ-YLHLGSKIVFTTNSRVVCGQMEA 207 (294)
Q Consensus 151 ~~~l~~~l~~kr~LlvlDdv~~~~~---~~~l~~~l~-~~~~gs~iivTtr~~~v~~~~~~ 207 (294)
.-.|.+.|.-++-++.+|+.-+.-+ ..++..... -...|-..++.|..-..|.....
T Consensus 144 RVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~Vad 204 (240)
T COG1126 144 RVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVAD 204 (240)
T ss_pred HHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhh
Confidence 3456677778888999999876322 222211111 13346678888887666554443
No 174
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.37 E-value=0.00079 Score=55.61 Aligned_cols=22 Identities=50% Similarity=0.736 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i 47 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLI 47 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4479999999999999999998
No 175
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.35 E-value=0.00014 Score=60.03 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=25.9
Q ss_pred ehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHh
Q 048597 82 RQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 82 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.+..+....++.|... .++.+.|++|+|||.||-..
T Consensus 4 p~~~~Q~~~~~al~~~----~~v~~~G~AGTGKT~LA~a~ 39 (205)
T PF02562_consen 4 PKNEEQKFALDALLNN----DLVIVNGPAGTGKTFLALAA 39 (205)
T ss_dssp --SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHH
T ss_pred CCCHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHH
Confidence 4556677778888744 79999999999999998776
No 176
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.35 E-value=0.00028 Score=69.67 Aligned_cols=166 Identities=17% Similarity=0.189 Sum_probs=86.9
Q ss_pred CceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCC--C------------------CCcc---cCChHHHHHHHHH
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLS--T------------------KSWQ---ENSFEDKALDIAG 156 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~--~------------------~~~~---~~~~~~~~~~l~~ 156 (294)
+..++.|+||+|.|||||.+.+.... +..+.++. . .+.. ..+...-...+..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~-----l~aq~G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~ 395 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLA-----LMFQSGIPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISA 395 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHH-----HHHHhCCCccCCccccccchhheeeecChHhHHhhhhhHHHHHHHHHHH
Confidence 34799999999999999999984321 11111100 0 0000 0001111112222
Q ss_pred Hhc--cCCeEEEEccccCccc---hhhh----cCCcCCCCCCcEEEEecCChHHhhccCCce----eecCCCCHHHHHHH
Q 048597 157 ILS--RKRFVLLLDDIWEHIN---LNKL----GVPLQYLHLGSKIVFTTNSRVVCGQMEATM----LNASPLRDEEAWRL 223 (294)
Q Consensus 157 ~l~--~kr~LlvlDdv~~~~~---~~~l----~~~l~~~~~gs~iivTtr~~~v~~~~~~~~----~~l~~L~~~~~~~L 223 (294)
.+. ..+-|+++|+.-...+ -..+ ...+ ...|+.+|+||............. ..+. ++.+ ...
T Consensus 396 il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l--~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~~-~l~- 470 (771)
T TIGR01069 396 ILSKTTENSLVLFDELGAGTDPDEGSALAISILEYL--LKQNAQVLITTHYKELKALMYNNEGVENASVL-FDEE-TLS- 470 (771)
T ss_pred HHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHH--HhcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcCC-CCc-
Confidence 332 4788999999876322 2222 2222 235789999999887643322111 1111 1111 000
Q ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q 048597 224 FEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVGRAMRSISSIEEWEHAIKIILR 282 (294)
Q Consensus 224 f~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~~L~~~~~~~~w~~~l~~l~~ 282 (294)
|..++.. + .+. ...|-.|++++ |+|-.+..-|.-+.. ....+.+.++..|.+
T Consensus 471 p~Ykl~~-G---~~g-~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 471 PTYKLLK-G---IPG-ESYAFEIAQRY-GIPHFIIEQAKTFYG-EFKEEINVLIEKLSA 522 (771)
T ss_pred eEEEECC-C---CCC-CcHHHHHHHHh-CcCHHHHHHHHHHHH-hhHHHHHHHHHHHHH
Confidence 1011111 1 111 24577888877 699999988887765 355677777777765
No 177
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.34 E-value=0.0011 Score=58.65 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=32.7
Q ss_pred ehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHh
Q 048597 82 RQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 82 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
+|..+..--+++|.++ ....|.+.|.+|.|||-||-..
T Consensus 228 prn~eQ~~ALdlLld~--dI~lV~L~G~AGtGKTlLALaA 265 (436)
T COG1875 228 PRNAEQRVALDLLLDD--DIDLVSLGGKAGTGKTLLALAA 265 (436)
T ss_pred cccHHHHHHHHHhcCC--CCCeEEeeccCCccHhHHHHHH
Confidence 4667777778888888 8999999999999999998776
No 178
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.34 E-value=0.00046 Score=62.34 Aligned_cols=23 Identities=26% Similarity=0.154 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.-..++|+|++|+|||||++.++
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~ 189 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIA 189 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHH
Confidence 34679999999999999999983
No 179
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.00036 Score=64.38 Aligned_cols=88 Identities=20% Similarity=0.232 Sum_probs=56.6
Q ss_pred eeehh---HHHHHHHHHHhcCC-------CCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHH
Q 048597 80 VIRQE---LLLDRVWRFVTDQE-------RNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFED 149 (294)
Q Consensus 80 ~vGr~---~~~~~l~~~L~~~~-------~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~ 149 (294)
+-|-| .++++|+++|.++. .=++-|.++||+|.|||-||+.|.....+- .+..++++++.+-...
T Consensus 306 VkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP-----FF~~sGSEFdEm~VGv 380 (752)
T KOG0734|consen 306 VKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP-----FFYASGSEFDEMFVGV 380 (752)
T ss_pred ccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC-----eEeccccchhhhhhcc
Confidence 45655 47888899998763 236789999999999999999985544321 1112233333333333
Q ss_pred HHHHHHHHh----ccCCeEEEEccccC
Q 048597 150 KALDIAGIL----SRKRFVLLLDDIWE 172 (294)
Q Consensus 150 ~~~~l~~~l----~~kr~LlvlDdv~~ 172 (294)
-+..+++.+ ..-+|+|++|++..
T Consensus 381 GArRVRdLF~aAk~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 381 GARRVRDLFAAAKARAPCIIFIDEIDA 407 (752)
T ss_pred cHHHHHHHHHHHHhcCCeEEEEechhh
Confidence 344455444 35579999999875
No 180
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.33 E-value=0.00082 Score=56.20 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l 53 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLL 53 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHH
Confidence 4579999999999999999999
No 181
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.33 E-value=0.0011 Score=53.71 Aligned_cols=104 Identities=20% Similarity=0.188 Sum_probs=55.3
Q ss_pred CceEEEEEcCCCChHHHHHHHhhCh------------hHHH---HHHHHHhCCCCCCc------------ccCCh-HHHH
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANL------------KKIQ---ADIGKKIGLSTKSW------------QENSF-EDKA 151 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~------------~~i~---~~i~~~~~~~~~~~------------~~~~~-~~~~ 151 (294)
.-.+++|.|++|+|||||++.+... ..+. ..+...++...... ...+. +...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qr 106 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQR 106 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHH
Confidence 3478999999999999999999211 1121 12222232211110 01111 1122
Q ss_pred HHHHHHhccCCeEEEEccccCcc---chhhhcCCcCCCCCCcEEEEecCChHHhh
Q 048597 152 LDIAGILSRKRFVLLLDDIWEHI---NLNKLGVPLQYLHLGSKIVFTTNSRVVCG 203 (294)
Q Consensus 152 ~~l~~~l~~kr~LlvlDdv~~~~---~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 203 (294)
-.|...+-.++-++++|+..+.- ....+...+.....+..||++|++.....
T Consensus 107 v~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 107 LALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 23455556778899999986532 12222222211123567888888877654
No 182
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.33 E-value=0.0021 Score=57.16 Aligned_cols=127 Identities=15% Similarity=0.074 Sum_probs=65.5
Q ss_pred CceEEEEEcCCCChHHHHHHHhhCh-----h----------HHHHHHHHHhC-----CCCCC----c----ccCChHHHH
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANL-----K----------KIQADIGKKIG-----LSTKS----W----QENSFEDKA 151 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~-----~----------~i~~~i~~~~~-----~~~~~----~----~~~~~~~~~ 151 (294)
-...+.++|+.|+||||+|..+... . ..-+.+...-. +.... . .....++..
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR 99 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVR 99 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHH
Confidence 4567999999999999999887111 0 00011110000 00000 0 011233333
Q ss_pred HHHHHHhc-----cCCeEEEEccccCc--cchhhhcCCcCCCCCCcEEEEecCChH-Hhhcc--CCceeecCCCCHHHHH
Q 048597 152 LDIAGILS-----RKRFVLLLDDIWEH--INLNKLGVPLQYLHLGSKIVFTTNSRV-VCGQM--EATMLNASPLRDEEAW 221 (294)
Q Consensus 152 ~~l~~~l~-----~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~--~~~~~~l~~L~~~~~~ 221 (294)
.+.+.+. +++-++++|++... ..-..+...+.....++.+|++|.+.. +.... .+..+.+.+++.++..
T Consensus 100 -~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~ 178 (325)
T PRK08699 100 -EIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEAL 178 (325)
T ss_pred -HHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHH
Confidence 3444442 44556667877652 233333333322223466777777654 32222 2333999999999988
Q ss_pred HHHHHH
Q 048597 222 RLFEEA 227 (294)
Q Consensus 222 ~Lf~~~ 227 (294)
+.+.+.
T Consensus 179 ~~L~~~ 184 (325)
T PRK08699 179 AYLRER 184 (325)
T ss_pred HHHHhc
Confidence 877653
No 183
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.32 E-value=0.0013 Score=52.97 Aligned_cols=105 Identities=20% Similarity=0.268 Sum_probs=55.1
Q ss_pred CceEEEEEcCCCChHHHHHHHhhCh------------hHHH----HHHHHHhCCCCCC--cccCCh--------HHHHHH
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANL------------KKIQ----ADIGKKIGLSTKS--WQENSF--------EDKALD 153 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~------------~~i~----~~i~~~~~~~~~~--~~~~~~--------~~~~~~ 153 (294)
.-.+++|+|++|.|||||++.+... ..+. ..+...++..... ....+. +...-.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~ 106 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRIA 106 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHHHH
Confidence 4479999999999999999999221 1111 1112222221111 001111 111123
Q ss_pred HHHHhccCCeEEEEccccCc---cchhhhcCCcCCCCCCcEEEEecCChHHhhc
Q 048597 154 IAGILSRKRFVLLLDDIWEH---INLNKLGVPLQYLHLGSKIVFTTNSRVVCGQ 204 (294)
Q Consensus 154 l~~~l~~kr~LlvlDdv~~~---~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~ 204 (294)
+...+-.+.-++++|+-... .....+...+.....+..||++|.+......
T Consensus 107 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 107 IARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 44555667789999997652 1222222222211224678888888766543
No 184
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.30 E-value=0.0012 Score=53.56 Aligned_cols=103 Identities=28% Similarity=0.356 Sum_probs=56.7
Q ss_pred CceEEEEEcCCCChHHHHHHHhhCh--------------------hHHHHH------HHHHhCCCCC---CcccCC-hHH
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANL--------------------KKIQAD------IGKKIGLSTK---SWQENS-FED 149 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~--------------------~~i~~~------i~~~~~~~~~---~~~~~~-~~~ 149 (294)
+-.+++|+|++|+|||||++.+... ...... ++..+++... .....+ -+.
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~ 103 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGER 103 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHH
Confidence 3479999999999999999999111 111111 2333343211 011112 122
Q ss_pred HHHHHHHHhccCCeEEEEccccCc---cchhhhcCCcCC--CCCCcEEEEecCChHHh
Q 048597 150 KALDIAGILSRKRFVLLLDDIWEH---INLNKLGVPLQY--LHLGSKIVFTTNSRVVC 202 (294)
Q Consensus 150 ~~~~l~~~l~~kr~LlvlDdv~~~---~~~~~l~~~l~~--~~~gs~iivTtr~~~v~ 202 (294)
..-.+...+-..+-++++|+.-.. .....+...+.. ...|..||++|.+....
T Consensus 104 qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 104 QRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 233455666678889999998652 222233222221 11256788888876654
No 185
>PRK07667 uridine kinase; Provisional
Probab=97.30 E-value=0.00037 Score=57.33 Aligned_cols=36 Identities=25% Similarity=0.411 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhh
Q 048597 87 LDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 87 ~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.+.+.+.+........+|+|.|++|+||||+++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~ 38 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLK 38 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 456777777665567899999999999999998874
No 186
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00052 Score=65.40 Aligned_cols=43 Identities=26% Similarity=0.355 Sum_probs=37.2
Q ss_pred ceeehhHHHHHHHHHHhc----CCCCceEEEEEcCCCChHHHHHHHh
Q 048597 79 TVIRQELLLDRVWRFVTD----QERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-+|.++.+++|++++.- ++.+-++++.+||+|+|||++++.|
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSI 458 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSI 458 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHH
Confidence 349999999999999964 3456789999999999999999887
No 187
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.29 E-value=0.00033 Score=54.27 Aligned_cols=107 Identities=12% Similarity=0.086 Sum_probs=57.0
Q ss_pred eehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHHHHHHHHHHhcc
Q 048597 81 IRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFEDKALDIAGILSR 160 (294)
Q Consensus 81 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 160 (294)
||....+.++.+.+..-......|.|.|..|+||+++|+.++....-..... . ........ ..+.+. .
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~----~-~~~~~~~~-----~~~l~~--a 68 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPF----I-VIDCASLP-----AELLEQ--A 68 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-C----C-CCCHHCTC-----HHHHHH--C
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCe----E-EechhhCc-----HHHHHH--c
Confidence 4666666677666665333557789999999999999998854332200000 0 00000111 112221 2
Q ss_pred CCeEEEEccccCc--cchhhhcCCcCC-CCCCcEEEEecCCh
Q 048597 161 KRFVLLLDDIWEH--INLNKLGVPLQY-LHLGSKIVFTTNSR 199 (294)
Q Consensus 161 kr~LlvlDdv~~~--~~~~~l~~~l~~-~~~gs~iivTtr~~ 199 (294)
+.-.|+|+|+..- .....+...+.. .....|+|.||...
T Consensus 69 ~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 69 KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 5667889999762 233333333321 24567999998754
No 188
>PRK09183 transposase/IS protein; Provisional
Probab=97.27 E-value=0.00042 Score=59.70 Aligned_cols=22 Identities=41% Similarity=0.445 Sum_probs=19.1
Q ss_pred ceEEEEEcCCCChHHHHHHHhh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...+.|+|++|+|||+||..+.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~ 123 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALG 123 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 3568899999999999999883
No 189
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.25 E-value=0.002 Score=53.41 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l 47 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRIL 47 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999999
No 190
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.24 E-value=0.00062 Score=55.11 Aligned_cols=104 Identities=18% Similarity=0.114 Sum_probs=54.0
Q ss_pred CceEEEEEcCCCChHHHHHHHhhChhHHHHH-HH---HHhCCCCCCcccCChHHHHHHHHHHhccCCeEEEEccccCcc-
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANLKKIQAD-IG---KKIGLSTKSWQENSFEDKALDIAGILSRKRFVLLLDDIWEHI- 174 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~-i~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~- 174 (294)
.-.+++|+|++|+|||||++.+......... +. ..++.......-+.-+...-.+...+..+.-++++|+--..-
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~LD 103 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 3479999999999999999998443321100 00 001110110001111222334555666788899999875521
Q ss_pred --chhhhcCCcCC--CCCCcEEEEecCChHHhh
Q 048597 175 --NLNKLGVPLQY--LHLGSKIVFTTNSRVVCG 203 (294)
Q Consensus 175 --~~~~l~~~l~~--~~~gs~iivTtr~~~v~~ 203 (294)
....+...+.. ...+..||++|.+.....
T Consensus 104 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 104 IEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 22222222211 112356888888766544
No 191
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.24 E-value=0.00036 Score=65.67 Aligned_cols=43 Identities=21% Similarity=0.343 Sum_probs=37.1
Q ss_pred ceeehhHHHHHHHHHHhc----CCCCceEEEEEcCCCChHHHHHHHh
Q 048597 79 TVIRQELLLDRVWRFVTD----QERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.++|.++.+++|++.|.. -+...+++.++||+|+||||||+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~l 123 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERL 123 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHH
Confidence 469999999999999932 2346689999999999999999998
No 192
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.23 E-value=0.00079 Score=54.26 Aligned_cols=104 Identities=19% Similarity=0.262 Sum_probs=54.7
Q ss_pred CceEEEEEcCCCChHHHHHHHhhChh------------HH----HHHHHHHhCCCCCCcc--c-------CC-hHHHHHH
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANLK------------KI----QADIGKKIGLSTKSWQ--E-------NS-FEDKALD 153 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~~------------~i----~~~i~~~~~~~~~~~~--~-------~~-~~~~~~~ 153 (294)
.-.+++|+|++|+|||||++.+.... .+ ...+...++....... . .+ -+...-.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~ 106 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLG 106 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHH
Confidence 34699999999999999999992211 11 1112222222111100 0 01 1112223
Q ss_pred HHHHhccCCeEEEEccccCcc---chhhhcCCcCC-CCCCcEEEEecCChHHhh
Q 048597 154 IAGILSRKRFVLLLDDIWEHI---NLNKLGVPLQY-LHLGSKIVFTTNSRVVCG 203 (294)
Q Consensus 154 l~~~l~~kr~LlvlDdv~~~~---~~~~l~~~l~~-~~~gs~iivTtr~~~v~~ 203 (294)
|...+-.+.-++++|+....- ....+...+.. ...|..||++|.+.....
T Consensus 107 la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 107 LARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 445556677799999986521 12222222211 123667888888876654
No 193
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.21 E-value=0.0016 Score=55.73 Aligned_cols=21 Identities=43% Similarity=0.823 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-.+++|+|++|+|||||++.+
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L 45 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKML 45 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 469999999999999999999
No 194
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.20 E-value=0.00074 Score=55.89 Aligned_cols=64 Identities=17% Similarity=0.188 Sum_probs=39.3
Q ss_pred CceEEEEEcCCCChHHHHHHHhhChhHHH----------------HHHHHHhCCCCCCcccCChHHHHHHHHHHhccCCe
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANLKKIQ----------------ADIGKKIGLSTKSWQENSFEDKALDIAGILSRKRF 163 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~~~i~----------------~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~ 163 (294)
.+.+|+|.|.+|+||||+|+.+....... ..+..........+...+.+-+.+.|...+++++.
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~v 86 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKPV 86 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCcc
Confidence 56899999999999999999983322210 01111222222222345666677778887777763
No 195
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.20 E-value=0.00076 Score=54.62 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l 46 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCI 46 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999999
No 196
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.20 E-value=0.002 Score=51.89 Aligned_cols=104 Identities=23% Similarity=0.340 Sum_probs=55.8
Q ss_pred CceEEEEEcCCCChHHHHHHHhhChh------------HHH---HHHHHHhCCCCCC---cccCCh--------H-HHHH
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANLK------------KIQ---ADIGKKIGLSTKS---WQENSF--------E-DKAL 152 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~~------------~i~---~~i~~~~~~~~~~---~~~~~~--------~-~~~~ 152 (294)
.-.+++|+|++|.|||||++.+.... .+. ..+...++..... ....+. . ...-
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv 104 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRL 104 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHH
Confidence 34699999999999999999993221 111 1112222211111 111111 1 1122
Q ss_pred HHHHHhccCCeEEEEccccCccc---hhhhcCCcCC-CCCCcEEEEecCChHHhh
Q 048597 153 DIAGILSRKRFVLLLDDIWEHIN---LNKLGVPLQY-LHLGSKIVFTTNSRVVCG 203 (294)
Q Consensus 153 ~l~~~l~~kr~LlvlDdv~~~~~---~~~l~~~l~~-~~~gs~iivTtr~~~v~~ 203 (294)
.+...+..++-++++|+.-..-+ ...+...+.. ...|..+|++|.+.....
T Consensus 105 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 105 ALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 35556667888999999865322 2222222221 122677888888876544
No 197
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.20 E-value=0.00092 Score=54.91 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...|.++.||+|+||||+.+.+
T Consensus 32 ~~~VTAlIGPSGcGKST~LR~l 53 (253)
T COG1117 32 KNKVTALIGPSGCGKSTLLRCL 53 (253)
T ss_pred CCceEEEECCCCcCHHHHHHHH
Confidence 4589999999999999999998
No 198
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.18 E-value=0.002 Score=53.44 Aligned_cols=22 Identities=41% Similarity=0.499 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l 48 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLI 48 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4479999999999999999998
No 199
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.18 E-value=0.0019 Score=54.07 Aligned_cols=22 Identities=50% Similarity=0.690 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l 48 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKML 48 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3469999999999999999999
No 200
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.17 E-value=0.002 Score=50.22 Aligned_cols=99 Identities=28% Similarity=0.341 Sum_probs=54.4
Q ss_pred CceEEEEEcCCCChHHHHHHHhhChhHHHHH-H----HHHhCCCCCCcccCChHHHHHHHHHHhccCCeEEEEccccCc-
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANLKKIQAD-I----GKKIGLSTKSWQENSFEDKALDIAGILSRKRFVLLLDDIWEH- 173 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~-i----~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~- 173 (294)
.-.+++|+|++|.|||||++.+......... + ...++... +-+.-+...-.+...+-.+.-++++|+.-..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~---~lS~G~~~rv~laral~~~p~illlDEP~~~L 101 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFE---QLSGGEKMRLALAKLLLENPNLLLLDEPTNHL 101 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEc---cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 4479999999999999999999554322110 0 00111100 0111122333455666677889999987642
Q ss_pred --cchhhhcCCcCCCCCCcEEEEecCChHHhh
Q 048597 174 --INLNKLGVPLQYLHLGSKIVFTTNSRVVCG 203 (294)
Q Consensus 174 --~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 203 (294)
.....+...+... +..|+++|.......
T Consensus 102 D~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 102 DLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 2222332222222 246888888766543
No 201
>PRK12377 putative replication protein; Provisional
Probab=97.16 E-value=0.0022 Score=54.80 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
....+.++|++|+|||+||..+.+
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~ 123 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGN 123 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998843
No 202
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.16 E-value=0.0015 Score=54.42 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l 46 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLI 46 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3468999999999999999998
No 203
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.16 E-value=0.00021 Score=57.97 Aligned_cols=21 Identities=38% Similarity=0.441 Sum_probs=18.2
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
..-+.++|+.|+|||.||..+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai 67 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAI 67 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHH
Confidence 467999999999999999988
No 204
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.15 E-value=0.0022 Score=51.36 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l 47 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRAL 47 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999999
No 205
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.15 E-value=0.0022 Score=60.60 Aligned_cols=113 Identities=22% Similarity=0.271 Sum_probs=64.4
Q ss_pred CceEEEEEcCCCChHHHHHHHh------------------------------------------h-C-hhHHHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR------------------------------------------A-N-LKKIQADIGKKI 135 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v------------------------------------------~-~-~~~i~~~i~~~~ 135 (294)
.-..|+|+|+.|+|||||.+.+ + . ...-.+.++.++
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 4578999999999999999998 0 0 011222333344
Q ss_pred CCCCCCcc----cCCh-HHHHHHHHHHhccCCeEEEEccccCcc---chhhhcCCcCCCCCCcEEEEecCChHHhhccCC
Q 048597 136 GLSTKSWQ----ENSF-EDKALDIAGILSRKRFVLLLDDIWEHI---NLNKLGVPLQYLHLGSKIVFTTNSRVVCGQMEA 207 (294)
Q Consensus 136 ~~~~~~~~----~~~~-~~~~~~l~~~l~~kr~LlvlDdv~~~~---~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~ 207 (294)
+++..... ..+- +...-.+...+-.+.-+||||+--+.- ..+.+...+..- .| .||+.|.+.........
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~G-tvl~VSHDr~Fl~~va~ 504 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-EG-TVLLVSHDRYFLDRVAT 504 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-CC-eEEEEeCCHHHHHhhcc
Confidence 33322110 1111 222233455556788999999876632 333333333222 24 58889999887766654
Q ss_pred ceeecCC
Q 048597 208 TMLNASP 214 (294)
Q Consensus 208 ~~~~l~~ 214 (294)
..+.+.+
T Consensus 505 ~i~~~~~ 511 (530)
T COG0488 505 RIWLVED 511 (530)
T ss_pred eEEEEcC
Confidence 4455553
No 206
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.15 E-value=0.00033 Score=54.27 Aligned_cols=20 Identities=50% Similarity=0.634 Sum_probs=18.3
Q ss_pred EEEEEcCCCChHHHHHHHhh
Q 048597 103 IIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v~ 122 (294)
+|.+.|++|+||||+|+.+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 68899999999999999983
No 207
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.15 E-value=0.0013 Score=59.06 Aligned_cols=35 Identities=29% Similarity=0.155 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHh
Q 048597 86 LLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 86 ~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...++++.+..-. .-..+.|+|++|+|||||++.+
T Consensus 119 ~~~RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~l 153 (380)
T PRK12608 119 LSMRVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQI 153 (380)
T ss_pred hhHhhhhheeecC-CCceEEEECCCCCCHHHHHHHH
Confidence 3445777776422 2346699999999999999986
No 208
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.14 E-value=0.0091 Score=55.58 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=30.3
Q ss_pred HHHHHHHHHHh-----cCCCCceEEEEEcCCCChHHHHHHHh
Q 048597 85 LLLDRVWRFVT-----DQERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 85 ~~~~~l~~~L~-----~~~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-++++..||. ...-+.+++.|.||+|+||||.++.+
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvL 130 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVL 130 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHH
Confidence 45778888887 34345679999999999999999887
No 209
>PRK04132 replication factor C small subunit; Provisional
Probab=97.14 E-value=0.0042 Score=61.66 Aligned_cols=149 Identities=11% Similarity=0.037 Sum_probs=84.3
Q ss_pred Ec--CCCChHHHHHHHhhChhHHHHH-H-HHHhCCCCCCcccCChHHHHHHHHHHhc------cCCeEEEEccccCc--c
Q 048597 107 YG--TGGVGKTTLLKQRANLKKIQAD-I-GKKIGLSTKSWQENSFEDKALDIAGILS------RKRFVLLLDDIWEH--I 174 (294)
Q Consensus 107 ~G--~~GiGKTtLa~~v~~~~~i~~~-i-~~~~~~~~~~~~~~~~~~~~~~l~~~l~------~kr~LlvlDdv~~~--~ 174 (294)
.| |.++||||+|..+.+.. ..+ + ...+.+... +....+.....+.+... .+..++++|+++.. .
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l--~g~~~~~~~lElNAS--d~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~ 645 (846)
T PRK04132 570 GGNLPTVLHNTTAALALAREL--FGENWRHNFLELNAS--DERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQD 645 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhh--hcccccCeEEEEeCC--CcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHH
Confidence 36 88899999998874421 000 0 001111111 11233444444443331 13479999999873 4
Q ss_pred chhhhcCCcCCCCCCcEEEEecCChH-Hhhc--cCCceeecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCC
Q 048597 175 NLNKLGVPLQYLHLGSKIVFTTNSRV-VCGQ--MEATMLNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECC 251 (294)
Q Consensus 175 ~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~ 251 (294)
....+...+..-...+++|++|.+.. +... ..+..+++.+++.++....+...+.......+ .+....|++.|+
T Consensus 646 AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~---~e~L~~Ia~~s~ 722 (846)
T PRK04132 646 AQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT---EEGLQAILYIAE 722 (846)
T ss_pred HHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcC
Confidence 55556555543334566776665543 2211 12334999999999988888776644332222 356789999999
Q ss_pred CChHHHHHHHH
Q 048597 252 CLPLALKTVGR 262 (294)
Q Consensus 252 GlPlai~~i~~ 262 (294)
|-+-.+..+-.
T Consensus 723 GDlR~AIn~Lq 733 (846)
T PRK04132 723 GDMRRAINILQ 733 (846)
T ss_pred CCHHHHHHHHH
Confidence 98855544443
No 210
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.13 E-value=0.002 Score=56.87 Aligned_cols=42 Identities=31% Similarity=0.280 Sum_probs=29.5
Q ss_pred ehhHHHHHHHHHHhcCC--CCceEEEEEcCCCChHHHHHHHhhC
Q 048597 82 RQELLLDRVWRFVTDQE--RNRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 82 Gr~~~~~~l~~~L~~~~--~~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
++........+++..-. ....-+.++|+.|+|||.||..+.+
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~ 178 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIAN 178 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 45555555566665421 1346799999999999999998833
No 211
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.13 E-value=0.0029 Score=53.86 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhh
Q 048597 86 LLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 86 ~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.+..+..+..........+.++|++|+|||+|+..+.
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia 120 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAIC 120 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHH
Confidence 4445555554432234588999999999999999983
No 212
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.12 E-value=0.0027 Score=52.83 Aligned_cols=19 Identities=47% Similarity=0.814 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHh
Q 048597 103 IIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v 121 (294)
+++|+|++|+|||||++.+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l 45 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRIL 45 (211)
T ss_pred cEEEECCCCCCHHHHHHHH
Confidence 8999999999999999999
No 213
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.12 E-value=0.0028 Score=52.94 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i 57 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVL 57 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHH
Confidence 4479999999999999999999
No 214
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.11 E-value=0.0011 Score=54.96 Aligned_cols=103 Identities=21% Similarity=0.178 Sum_probs=54.5
Q ss_pred CceEEEEEcCCCChHHHHHHHhhChh----------------HHHHHHHHHhCCCCCCcccCChHHHH---HHHHHHh--
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANLK----------------KIQADIGKKIGLSTKSWQENSFEDKA---LDIAGIL-- 158 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~~----------------~i~~~i~~~~~~~~~~~~~~~~~~~~---~~l~~~l-- 158 (294)
...++.|.|++|.||||+++.+.... .+...+...++.... ......... ..+...+
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~--~~~~~S~fs~e~~~~~~il~~ 105 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDS--MERNLSTFASEMSETAYILDY 105 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccc--cchhhhHHHHHHHHHHHHHHh
Confidence 34899999999999999999883322 111112112111100 011111111 1122222
Q ss_pred ccCCeEEEEccccCc---cch----hhhcCCcCCCCCCcEEEEecCChHHhhccC
Q 048597 159 SRKRFVLLLDDIWEH---INL----NKLGVPLQYLHLGSKIVFTTNSRVVCGQME 206 (294)
Q Consensus 159 ~~kr~LlvlDdv~~~---~~~----~~l~~~l~~~~~gs~iivTtr~~~v~~~~~ 206 (294)
..++-|+++|+.... .+. ..+...+. ..|+.+|++|.....+....
T Consensus 106 ~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 106 ADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAILG 158 (204)
T ss_pred cCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhh
Confidence 356789999998542 111 11222222 22788999999988766544
No 215
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.10 E-value=0.00072 Score=57.16 Aligned_cols=25 Identities=36% Similarity=0.587 Sum_probs=22.0
Q ss_pred CCCceEEEEEcCCCChHHHHHHHhh
Q 048597 98 ERNRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 98 ~~~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.....+|+|.|++|+|||||++.+.
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~ 54 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLE 54 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3467899999999999999999873
No 216
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.09 E-value=0.00071 Score=60.95 Aligned_cols=25 Identities=28% Similarity=0.115 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHhhChh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRANLK 125 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~~~~ 125 (294)
-...+|+|++|+|||||++.|++..
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I 193 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSI 193 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHH
Confidence 4678899999999999999985433
No 217
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.09 E-value=0.00035 Score=62.31 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHhhCh
Q 048597 99 RNRGIIGLYGTGGVGKTTLLKQRANL 124 (294)
Q Consensus 99 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 124 (294)
..+..++||||+|+|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 36789999999999999999988543
No 218
>PRK06547 hypothetical protein; Provisional
Probab=97.08 E-value=0.00077 Score=54.30 Aligned_cols=32 Identities=25% Similarity=0.179 Sum_probs=24.9
Q ss_pred HHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhC
Q 048597 90 VWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 90 l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
+...+... ...+|+|.|++|+||||+++.+..
T Consensus 6 ~~~~~~~~--~~~~i~i~G~~GsGKTt~a~~l~~ 37 (172)
T PRK06547 6 IAARLCGG--GMITVLIDGRSGSGKTTLAGALAA 37 (172)
T ss_pred HHHHhhcC--CCEEEEEECCCCCCHHHHHHHHHH
Confidence 33444443 788999999999999999988843
No 219
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.08 E-value=0.005 Score=53.28 Aligned_cols=112 Identities=21% Similarity=0.233 Sum_probs=63.7
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhCh------------hHH-----HHHHHHHhC-CCCCCc----c
Q 048597 86 LLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANL------------KKI-----QADIGKKIG-LSTKSW----Q 143 (294)
Q Consensus 86 ~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~------------~~i-----~~~i~~~~~-~~~~~~----~ 143 (294)
..+.++..+... ....-++|+|+.|+|||||++.+... .++ ..++...+. ++.... +
T Consensus 97 ~~~~~l~~l~~~-~~~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~ 175 (270)
T TIGR02858 97 AADKLLPYLVRN-NRVLNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTD 175 (270)
T ss_pred cHHHHHHHHHhC-CCeeEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccccccccc
Confidence 344455555532 24578999999999999999998211 111 233333222 111110 0
Q ss_pred cCChHHHHHHHHHHhc-cCCeEEEEccccCccchhhhcCCcCCCCCCcEEEEecCChHH
Q 048597 144 ENSFEDKALDIAGILS-RKRFVLLLDDIWEHINLNKLGVPLQYLHLGSKIVFTTNSRVV 201 (294)
Q Consensus 144 ~~~~~~~~~~l~~~l~-~kr~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v 201 (294)
..+....+..+...+. ..+-++++|++-..+.+..+...+. .|..+|+||....+
T Consensus 176 v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 176 VLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred ccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 1111111223333333 5788999999987766666644442 47789999987655
No 220
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.015 Score=55.31 Aligned_cols=157 Identities=17% Similarity=0.116 Sum_probs=82.8
Q ss_pred ceeehhHHHHHHHHHHhcC-----------CCCceEEEEEcCCCChHHHHHHHhhChhH-----HHH--HHHHHhCCCCC
Q 048597 79 TVIRQELLLDRVWRFVTDQ-----------ERNRGIIGLYGTGGVGKTTLLKQRANLKK-----IQA--DIGKKIGLSTK 140 (294)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-----i~~--~i~~~~~~~~~ 140 (294)
.+-|.++.+.++.+.+..+ -..++-|.++||+|+|||++|+.+.+... +.. -|...+
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~v----- 509 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYV----- 509 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhc-----
Confidence 4445776666666555322 14678999999999999999999955332 111 111111
Q ss_pred CcccCChHHHHHHHHHHhccCCeEEEEccccCcc-------------chhhhcCCcCC--CCCCcEEEEecCCh-HH-hh
Q 048597 141 SWQENSFEDKALDIAGILSRKRFVLLLDDIWEHI-------------NLNKLGVPLQY--LHLGSKIVFTTNSR-VV-CG 203 (294)
Q Consensus 141 ~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~-------------~~~~l~~~l~~--~~~gs~iivTtr~~-~v-~~ 203 (294)
..++..+..-+.+.=+--.++|+||++.... .+..+..-+.. ..++--||-.|... .+ ..
T Consensus 510 ---GeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~A 586 (693)
T KOG0730|consen 510 ---GESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPA 586 (693)
T ss_pred ---CchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHH
Confidence 2233333333333334557999999987521 01111111111 11122233333222 22 11
Q ss_pred ccC---Cce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHH
Q 048597 204 QME---ATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELA 243 (294)
Q Consensus 204 ~~~---~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~ 243 (294)
.+. ... +.+.+-+.+...++|+.++-.......-++.+++
T Consensus 587 LlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La 630 (693)
T KOG0730|consen 587 LLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELA 630 (693)
T ss_pred HcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHH
Confidence 222 334 7788888888899999888554433333444443
No 221
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.08 E-value=0.02 Score=50.77 Aligned_cols=37 Identities=24% Similarity=0.449 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCC-CCceEEEEEcCCCChHHHHHHHh
Q 048597 85 LLLDRVWRFVTDQE-RNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 85 ~~~~~l~~~L~~~~-~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+.|.+.+...+ ....+|+|.|+=|+||||+.+.+
T Consensus 3 ~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l 40 (325)
T PF07693_consen 3 PYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNML 40 (325)
T ss_pred HHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHH
Confidence 34556677776643 57889999999999999999988
No 222
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.06 E-value=0.0013 Score=60.36 Aligned_cols=45 Identities=33% Similarity=0.271 Sum_probs=33.7
Q ss_pred CceeehhHHHHHHHHHHhcC--------------CCCceEEEEEcCCCChHHHHHHHhh
Q 048597 78 RTVIRQELLLDRVWRFVTDQ--------------ERNRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~--------------~~~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..++|.+..++.+...+... +...+.+.++|++|+|||+||+.+.
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA 129 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLA 129 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHH
Confidence 46899998888776555211 0123679999999999999999884
No 223
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.06 E-value=0.0033 Score=52.11 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|.|++|+|||||++.+
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l 54 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILAL 54 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4479999999999999999999
No 224
>COG3910 Predicted ATPase [General function prediction only]
Probab=97.06 E-value=0.0028 Score=51.03 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
..++-.|+|..|+|||||+-.+
T Consensus 36 ~apIT~i~GENGsGKSTLLEai 57 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAI 57 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHH
Confidence 4689999999999999999988
No 225
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.06 E-value=0.0018 Score=55.25 Aligned_cols=125 Identities=20% Similarity=0.240 Sum_probs=69.3
Q ss_pred CceEEEEEcCCCChHHHHHHHh------------hC--------hh---HHHHHHHHHhCCCCCCc---c-cCChHH-HH
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR------------AN--------LK---KIQADIGKKIGLSTKSW---Q-ENSFED-KA 151 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v------------~~--------~~---~i~~~i~~~~~~~~~~~---~-~~~~~~-~~ 151 (294)
+-.+++|+|.+|+|||||++.+ |+ .. +-..+++..+++..... . ..+-.+ ..
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQR 117 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQR 117 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhh
Confidence 4579999999999999999999 22 11 12234455555432110 0 111112 22
Q ss_pred HHHHHHhccCCeEEEEccccCcc------chhhhcCCcCCCCCCcEEEEecCChHHhhccCCce--eecCC-CCHHHHHH
Q 048597 152 LDIAGILSRKRFVLLLDDIWEHI------NLNKLGVPLQYLHLGSKIVFTTNSRVVCGQMEATM--LNASP-LRDEEAWR 222 (294)
Q Consensus 152 ~~l~~~l~~kr~LlvlDdv~~~~------~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~--~~l~~-L~~~~~~~ 222 (294)
-.|.+.|.-+.-|+|.|+.-+.- +.-.+...+. ...|-..++.|.+-.++..+.... ..++. .......+
T Consensus 118 i~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~ 196 (268)
T COG4608 118 IGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEE 196 (268)
T ss_pred HHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHH
Confidence 24667788899999999875532 2222222221 223556777888877776665443 22222 33344445
Q ss_pred HHH
Q 048597 223 LFE 225 (294)
Q Consensus 223 Lf~ 225 (294)
+|.
T Consensus 197 ~~~ 199 (268)
T COG4608 197 VFS 199 (268)
T ss_pred Hhh
Confidence 553
No 226
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.06 E-value=0.0021 Score=53.76 Aligned_cols=99 Identities=17% Similarity=0.240 Sum_probs=57.6
Q ss_pred CceeehhHHHHHHHHHHhc--CCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHHHHHHHH
Q 048597 78 RTVIRQELLLDRVWRFVTD--QERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFEDKALDIA 155 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~ 155 (294)
..++|.+...+.+++--.. ......-|.+||..|+|||+|++.+.+...- .-+.-+.+ ...+... ...|.
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~--~glrLVEV-----~k~dl~~-Lp~l~ 131 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYAD--EGLRLVEV-----DKEDLAT-LPDLV 131 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHh--cCCeEEEE-----cHHHHhh-HHHHH
Confidence 4678988877777654432 1125568999999999999999988542211 00011111 1111111 12344
Q ss_pred HHh--ccCCeEEEEccccC---ccchhhhcCCcC
Q 048597 156 GIL--SRKRFVLLLDDIWE---HINLNKLGVPLQ 184 (294)
Q Consensus 156 ~~l--~~kr~LlvlDdv~~---~~~~~~l~~~l~ 184 (294)
+.| ...||+|+.||+.= ......+...+.
T Consensus 132 ~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~Le 165 (287)
T COG2607 132 ELLRARPEKFILFCDDLSFEEGDDAYKALKSALE 165 (287)
T ss_pred HHHhcCCceEEEEecCCCCCCCchHHHHHHHHhc
Confidence 444 46799999999942 345555655553
No 227
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.05 E-value=0.0012 Score=58.95 Aligned_cols=43 Identities=16% Similarity=0.139 Sum_probs=33.9
Q ss_pred eeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhh
Q 048597 80 VIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 80 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
++|....+.++.+.+..-.....-|.|+|..|+||+++|+.+.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH 43 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLH 43 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHH
Confidence 4677777777777776544455778999999999999999884
No 228
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.05 E-value=0.0029 Score=51.42 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l 46 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEAL 46 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3468999999999999999999
No 229
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.04 E-value=0.0059 Score=53.60 Aligned_cols=22 Identities=55% Similarity=0.736 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.++++.|++|+|||||.+.+
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l 51 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKIL 51 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999999
No 230
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.04 E-value=0.0032 Score=55.54 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 18 ~Ge~~~l~G~NGaGKSTLl~~l 39 (302)
T TIGR01188 18 EGEVFGFLGPNGAGKTTTIRML 39 (302)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3469999999999999999999
No 231
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.04 E-value=0.0038 Score=55.02 Aligned_cols=22 Identities=36% Similarity=0.644 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|+.|.|||||++.+
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l 48 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKII 48 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999999
No 232
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0047 Score=58.11 Aligned_cols=169 Identities=18% Similarity=0.111 Sum_probs=92.3
Q ss_pred ceeehhHHHHHHHHHHhcC-----------CCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCC----cc
Q 048597 79 TVIRQELLLDRVWRFVTDQ-----------ERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKS----WQ 143 (294)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~----~~ 143 (294)
.+-|.++...++...+..+ -..+.-|.+|||+|+|||-||+.|.|...+- .+.+.+.. +-
T Consensus 512 dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~N-----FisVKGPELlNkYV 586 (802)
T KOG0733|consen 512 DIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGAN-----FISVKGPELLNKYV 586 (802)
T ss_pred hcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCc-----eEeecCHHHHHHHh
Confidence 3344566666666665543 1246789999999999999999996644321 00011100 01
Q ss_pred cCChHHHHHHHHHHhccCCeEEEEccccCc-------cch------hhhcCCcC--CCCCCcEEEEecCChHHh-----h
Q 048597 144 ENSFEDKALDIAGILSRKRFVLLLDDIWEH-------INL------NKLGVPLQ--YLHLGSKIVFTTNSRVVC-----G 203 (294)
Q Consensus 144 ~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~-------~~~------~~l~~~l~--~~~~gs~iivTtr~~~v~-----~ 203 (294)
..++.....-+++.=..-.|+|++|++... ..| ..+..-+. ....|--||-.|...++. .
T Consensus 587 GESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLR 666 (802)
T KOG0733|consen 587 GESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILR 666 (802)
T ss_pred hhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcC
Confidence 123333333344443567899999998751 111 12211111 234566666666554431 1
Q ss_pred ccCCce-eecCCCCHHHHHHHHHHHhCCCC--CCCCCCHHHHHHHHHHhCCCCh
Q 048597 204 QMEATM-LNASPLRDEEAWRLFEEAVGRYV--LDSHPDIPELAKTMAEECCCLP 254 (294)
Q Consensus 204 ~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~--~~~~~~~~~~~~~I~~~c~GlP 254 (294)
...-.. +.++.-+.+|-..+++...-... ...+-++.++++. .+|.|.-
T Consensus 667 PGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 667 PGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred CCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 112233 77888888899999988775322 2333455555443 3566654
No 233
>PRK04296 thymidine kinase; Provisional
Probab=97.03 E-value=0.00073 Score=55.40 Aligned_cols=96 Identities=24% Similarity=0.154 Sum_probs=51.4
Q ss_pred eEEEEEcCCCChHHHHHHHhhCh-----------------hHHHHHHHHHhCCCCCCcccCChHHHHHHHHHHhccCCeE
Q 048597 102 GIIGLYGTGGVGKTTLLKQRANL-----------------KKIQADIGKKIGLSTKSWQENSFEDKALDIAGILSRKRFV 164 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~~~-----------------~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~L 164 (294)
.++.|+|+.|.||||++..+... ..-...+..+++............++...+.+ ..++.-+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~dv 81 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEKIDC 81 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCCCCE
Confidence 57889999999999998777111 11111233333322111111223344444444 2334458
Q ss_pred EEEccccCc--cchhhhcCCcCCCCCCcEEEEecCChH
Q 048597 165 LLLDDIWEH--INLNKLGVPLQYLHLGSKIVFTTNSRV 200 (294)
Q Consensus 165 lvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~ 200 (294)
|++|++.-. ++...+...+ ...|..+++|.+..+
T Consensus 82 viIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 82 VLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred EEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 999999542 2233332222 234778999998844
No 234
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=97.03 E-value=0.00062 Score=67.46 Aligned_cols=166 Identities=21% Similarity=0.189 Sum_probs=88.4
Q ss_pred CceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCC--------------------ccc---CChHHHHHHHHH
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKS--------------------WQE---NSFEDKALDIAG 156 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~--------------------~~~---~~~~~~~~~l~~ 156 (294)
+.+++.|+||++.||||+.+.+.- ..++.+.++.... ... .+...-...+..
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl-----~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~ 400 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGL-----AALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVR 400 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHH-----HHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHHHHHHHHH
Confidence 457899999999999999998821 1122222211000 000 111111222233
Q ss_pred Hhc--cCCeEEEEccccCccc---hhhh----cCCcCCCCCCcEEEEecCChHHhhccCCce----eecCCCCHHHHHHH
Q 048597 157 ILS--RKRFVLLLDDIWEHIN---LNKL----GVPLQYLHLGSKIVFTTNSRVVCGQMEATM----LNASPLRDEEAWRL 223 (294)
Q Consensus 157 ~l~--~kr~LlvlDdv~~~~~---~~~l----~~~l~~~~~gs~iivTtr~~~v~~~~~~~~----~~l~~L~~~~~~~L 223 (294)
.+. ..+-|+++|+.-...+ -..+ ...+ ...|+.+|+||....+........ ..+. ++.+ ...
T Consensus 401 Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l--~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~d~~-~l~- 475 (782)
T PRK00409 401 ILEKADKNSLVLFDELGAGTDPDEGAALAISILEYL--RKRGAKIIATTHYKELKALMYNREGVENASVE-FDEE-TLR- 475 (782)
T ss_pred HHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHH--HHCCCEEEEECChHHHHHHHhcCCCeEEEEEE-EecC-cCc-
Confidence 332 4778999999875322 1122 2222 224789999999987755433221 2221 1111 100
Q ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q 048597 224 FEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVGRAMRSISSIEEWEHAIKIILR 282 (294)
Q Consensus 224 f~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~~L~~~~~~~~w~~~l~~l~~ 282 (294)
+...+.. + .+ -...|-+|++.+ |+|-.+..-|.-+-. ......+.++..|..
T Consensus 476 ~~Ykl~~-G---~~-g~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~l~~ 527 (782)
T PRK00409 476 PTYRLLI-G---IP-GKSNAFEIAKRL-GLPENIIEEAKKLIG-EDKEKLNELIASLEE 527 (782)
T ss_pred EEEEEee-C---CC-CCcHHHHHHHHh-CcCHHHHHHHHHHHh-hhhhHHHHHHHHHHH
Confidence 0001111 1 11 124577888877 699999988887665 355677777777765
No 235
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.03 E-value=0.00047 Score=56.68 Aligned_cols=19 Identities=58% Similarity=0.842 Sum_probs=18.2
Q ss_pred EEEEEcCCCChHHHHHHHh
Q 048597 103 IIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v 121 (294)
+|+|.|++|+||||+|+.+
T Consensus 1 IIgI~G~sgSGKTTla~~L 19 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRL 19 (194)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHH
Confidence 6999999999999999988
No 236
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.02 E-value=0.0011 Score=55.32 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCChHHHHHHHhh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.+++.|+|+.|.|||||.+.+.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 4899999999999999999884
No 237
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.02 E-value=0.0015 Score=58.14 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=19.3
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+.++|+.|+|||+||..+
T Consensus 183 ~~~Lll~G~~GtGKThLa~aI 203 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCI 203 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHH
Confidence 377999999999999999988
No 238
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.02 E-value=0.0074 Score=54.66 Aligned_cols=22 Identities=45% Similarity=0.570 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
..++|+++|++|+||||++..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKL 261 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKM 261 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHH
Confidence 4579999999999999999888
No 239
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.01 E-value=0.0054 Score=48.78 Aligned_cols=60 Identities=17% Similarity=0.220 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhccCCeEEEEccccC------ccchhhhcCCcCCCCCCcEEEEecCChHHhhccCCc
Q 048597 148 EDKALDIAGILSRKRFVLLLDDIWE------HINLNKLGVPLQYLHLGSKIVFTTNSRVVCGQMEAT 208 (294)
Q Consensus 148 ~~~~~~l~~~l~~kr~LlvlDdv~~------~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~ 208 (294)
++..-.|.+.+...+-+++-|+--- .....++...+ ....|+.+++.|.+..++..|.-.
T Consensus 151 EQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~l-nre~G~TlVlVTHD~~LA~Rc~R~ 216 (228)
T COG4181 151 EQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFAL-NRERGTTLVLVTHDPQLAARCDRQ 216 (228)
T ss_pred HHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHH-hhhcCceEEEEeCCHHHHHhhhhe
Confidence 3444456677778888888886532 23344443333 244688999999999988776543
No 240
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.00 E-value=0.00062 Score=56.64 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
+..+|+|.|++|+|||||++.+..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999998843
No 241
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.025 Score=55.15 Aligned_cols=169 Identities=17% Similarity=0.100 Sum_probs=96.3
Q ss_pred ceeehhH---HHHHHHHHHhcC-------CCCceEEEEEcCCCChHHHHHHHhhChhHH------HHHHHHHhCCCCCCc
Q 048597 79 TVIRQEL---LLDRVWRFVTDQ-------ERNRGIIGLYGTGGVGKTTLLKQRANLKKI------QADIGKKIGLSTKSW 142 (294)
Q Consensus 79 ~~vGr~~---~~~~l~~~L~~~-------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i------~~~i~~~~~~~~~~~ 142 (294)
++.|.++ ++++++++|.++ ..-++=+.++||+|+|||-||+.+.....+ -.+|.+.++...
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~--- 388 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVG--- 388 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccc---
Confidence 3567664 566667777664 235778999999999999999999543332 123333332210
Q ss_pred ccCChHHHHHHHHHHh-ccCCeEEEEccccCcc-----------------chhhhcCCcCC--CCCCcEEEEecCChHHh
Q 048597 143 QENSFEDKALDIAGIL-SRKRFVLLLDDIWEHI-----------------NLNKLGVPLQY--LHLGSKIVFTTNSRVVC 202 (294)
Q Consensus 143 ~~~~~~~~~~~l~~~l-~~kr~LlvlDdv~~~~-----------------~~~~l~~~l~~--~~~gs~iivTtr~~~v~ 202 (294)
......|...- ...++++.+|++.... .++++...+.. ...+--++-+|+..++.
T Consensus 389 -----asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~l 463 (774)
T KOG0731|consen 389 -----ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDIL 463 (774)
T ss_pred -----hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCcccc
Confidence 11222233222 4567899999886411 12222211111 11222334455544441
Q ss_pred -----hccCCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHH
Q 048597 203 -----GQMEATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALK 258 (294)
Q Consensus 203 -----~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 258 (294)
..-.... +.+..-+.....++|.-++...... .+..++.+ |+....|++=|..
T Consensus 464 d~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~gadl 522 (774)
T KOG0731|consen 464 DPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGADL 522 (774)
T ss_pred CHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHHHH
Confidence 1112223 8888888888999999888654422 34456666 9999999885543
No 242
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.99 E-value=0.0075 Score=58.76 Aligned_cols=140 Identities=16% Similarity=0.053 Sum_probs=72.0
Q ss_pred eEEEEEcCCCChHHHHHHHhhChhHH-----H-HHHHHHhCCCCCCcccCChHHHHHHHHHHhccCCeEEEEccccCcc-
Q 048597 102 GIIGLYGTGGVGKTTLLKQRANLKKI-----Q-ADIGKKIGLSTKSWQENSFEDKALDIAGILSRKRFVLLLDDIWEHI- 174 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~~~~~i-----~-~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~- 174 (294)
+-|.++|++|+||||+++.+.....+ . ..+.... ...........+.......+++|++|+++...
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~-------~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~ 258 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF-------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGR 258 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh-------hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhh
Confidence 45999999999999999988332110 0 0011000 01112223333333334567899999986521
Q ss_pred -----------ch----hhhcCCcC--CCCCCcEEEEecCChHHhh---c--cCCce-eecCCCCHHHHHHHHHHHhCCC
Q 048597 175 -----------NL----NKLGVPLQ--YLHLGSKIVFTTNSRVVCG---Q--MEATM-LNASPLRDEEAWRLFEEAVGRY 231 (294)
Q Consensus 175 -----------~~----~~l~~~l~--~~~~gs~iivTtr~~~v~~---~--~~~~~-~~l~~L~~~~~~~Lf~~~~~~~ 231 (294)
.. ..+...+. ....+.-+|.||...+... . ..... +.+...+.++-.++++.+....
T Consensus 259 ~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~ 338 (644)
T PRK10733 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV 338 (644)
T ss_pred ccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcC
Confidence 11 11111111 1123444556776654321 1 12233 8888888888888888776443
Q ss_pred CCCCCCCHHHHHHHHHHhCCC
Q 048597 232 VLDSHPDIPELAKTMAEECCC 252 (294)
Q Consensus 232 ~~~~~~~~~~~~~~I~~~c~G 252 (294)
......++ ..+++.+.|
T Consensus 339 ~l~~~~d~----~~la~~t~G 355 (644)
T PRK10733 339 PLAPDIDA----AIIARGTPG 355 (644)
T ss_pred CCCCcCCH----HHHHhhCCC
Confidence 22222222 345666666
No 243
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.99 E-value=0.001 Score=54.98 Aligned_cols=98 Identities=13% Similarity=0.115 Sum_probs=54.6
Q ss_pred eEEEEEcCCCChHHHHHHHhhChhHHH---------H--HHHHHhCCC--CCCcccCChHHHHHHHHHHhccCCeEEEEc
Q 048597 102 GIIGLYGTGGVGKTTLLKQRANLKKIQ---------A--DIGKKIGLS--TKSWQENSFEDKALDIAGILSRKRFVLLLD 168 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~~~~~i~---------~--~i~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~kr~LlvlD 168 (294)
.+|.|+|+.|+||||+++.+.....-. . ++...-..+ .......+.......+...+....=++++|
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~g 81 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVG 81 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEc
Confidence 478999999999999998762111000 0 000000000 000001122345566777777778899999
Q ss_pred cccCccchhhhcCCcCCCCCCcEEEEecCChHHh
Q 048597 169 DIWEHINLNKLGVPLQYLHLGSKIVFTTNSRVVC 202 (294)
Q Consensus 169 dv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 202 (294)
++.+.+.+..+... ...|..++.|+...++.
T Consensus 82 Eird~e~~~~~l~~---a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 82 EMRDLETIRLALTA---AETGHLVMSTLHTNSAA 112 (198)
T ss_pred CCCCHHHHHHHHHH---HHcCCEEEEEecCCcHH
Confidence 99876655443222 22355677777766554
No 244
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.97 E-value=0.00055 Score=51.82 Aligned_cols=21 Identities=48% Similarity=0.662 Sum_probs=18.9
Q ss_pred EEEEcCCCChHHHHHHHhhCh
Q 048597 104 IGLYGTGGVGKTTLLKQRANL 124 (294)
Q Consensus 104 i~I~G~~GiGKTtLa~~v~~~ 124 (294)
|+|.|++|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999655
No 245
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.97 E-value=0.0016 Score=62.15 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=38.2
Q ss_pred cCceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhh
Q 048597 77 ERTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...++|....+.++.+.+..-......|.|+|+.|+|||++|+.+.
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih 240 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIH 240 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHH
Confidence 3578999999999888887644455678899999999999999984
No 246
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.96 E-value=0.0007 Score=56.28 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
...+|+|+|++|+|||||++.+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999854
No 247
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.95 E-value=0.0045 Score=51.79 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|.|++|+|||||++.+
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i 50 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLL 50 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999999
No 248
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.95 E-value=0.011 Score=51.85 Aligned_cols=152 Identities=14% Similarity=0.152 Sum_probs=86.1
Q ss_pred CceeehhHHHHHHHHHHhcC--CCCceEEEEEcCCCChHHHHHHHhhCh--------------------hHHHHHHHHHh
Q 048597 78 RTVIRQELLLDRVWRFVTDQ--ERNRGIIGLYGTGGVGKTTLLKQRANL--------------------KKIQADIGKKI 135 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~~GiGKTtLa~~v~~~--------------------~~i~~~i~~~~ 135 (294)
..++|-.++..++-.++... .+...-+.|+||.|.|||+|...+..+ .-..+.|..++
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql 103 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQL 103 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHH
Confidence 45789999999998888652 235678889999999999997776221 11334444444
Q ss_pred CCCCCC--cccCChHHHHHHHHHHhc------cCCeEEEEccccCccc-------hhhhcCCcCCCCCCcEEEEecCChH
Q 048597 136 GLSTKS--WQENSFEDKALDIAGILS------RKRFVLLLDDIWEHIN-------LNKLGVPLQYLHLGSKIVFTTNSRV 200 (294)
Q Consensus 136 ~~~~~~--~~~~~~~~~~~~l~~~l~------~kr~LlvlDdv~~~~~-------~~~l~~~l~~~~~gs~iivTtr~~~ 200 (294)
...... ....+..+...++...|+ +-.+++|+|+++.-.. +..+...-....+-+-|-+|||-..
T Consensus 104 ~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~ 183 (408)
T KOG2228|consen 104 ALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDI 183 (408)
T ss_pred HHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccH
Confidence 321110 112223333444444443 3357888888764211 1111111111223345568888643
Q ss_pred -------HhhccCCce-eecCCCCHHHHHHHHHHHhC
Q 048597 201 -------VCGQMEATM-LNASPLRDEEAWRLFEEAVG 229 (294)
Q Consensus 201 -------v~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~ 229 (294)
|-....... +-+.+++-++...++++...
T Consensus 184 lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 184 LELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred HHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 333344444 66677888888888887763
No 249
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=96.95 E-value=0.0034 Score=53.29 Aligned_cols=22 Identities=36% Similarity=0.655 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i 46 (237)
T TIGR00968 25 TGSLVALLGPSGSGKSTLLRII 46 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999998
No 250
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.038 Score=50.45 Aligned_cols=180 Identities=18% Similarity=0.172 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhcCC-------CCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHHHHHHHHHH
Q 048597 85 LLLDRVWRFVTDQE-------RNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFEDKALDIAGI 157 (294)
Q Consensus 85 ~~~~~l~~~L~~~~-------~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (294)
..++.+.+++...+ .--+-..++||+|.||||++.++.|..+-- ...+.++ ...+..+ |+..
T Consensus 212 ~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~yd---IydLeLt----~v~~n~d----Lr~L 280 (457)
T KOG0743|consen 212 RIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYD---IYDLELT----EVKLDSD----LRHL 280 (457)
T ss_pred HHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCc---eEEeeec----cccCcHH----HHHH
Confidence 34555555554431 235678899999999999987763321100 0000110 0111122 3333
Q ss_pred h--ccCCeEEEEccccCccc--------------------hhhhcCC----cCCCCCCcEE-EEecCChHH---hh-ccC
Q 048597 158 L--SRKRFVLLLDDIWEHIN--------------------LNKLGVP----LQYLHLGSKI-VFTTNSRVV---CG-QME 206 (294)
Q Consensus 158 l--~~kr~LlvlDdv~~~~~--------------------~~~l~~~----l~~~~~gs~i-ivTtr~~~v---~~-~~~ 206 (294)
| ...+-+||+.|+....+ +..|... ...++ +-|| |+||...+- |- ..+
T Consensus 281 L~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg-~ERIivFTTNh~EkLDPALlRpG 359 (457)
T KOG0743|consen 281 LLATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCG-DERIIVFTTNHKEKLDPALLRPG 359 (457)
T ss_pred HHhCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCC-CceEEEEecCChhhcCHhhcCCC
Confidence 3 34556777777754211 1111111 11121 2355 566665543 21 112
Q ss_pred -Cce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHHH-HHcCCCC-HHHHHHHHHHHHh
Q 048597 207 -ATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVGR-AMRSISS-IEEWEHAIKIILR 282 (294)
Q Consensus 207 -~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~-~L~~~~~-~~~w~~~l~~l~~ 282 (294)
... +++.-=+.+....||...++.+. .+ .+..+|.+.-.|.-+.=..++. +|.++.+ ....+.+.+.|++
T Consensus 360 RmDmhI~mgyCtf~~fK~La~nYL~~~~--~h----~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~ 433 (457)
T KOG0743|consen 360 RMDMHIYMGYCTFEAFKTLASNYLGIEE--DH----RLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGLVEALES 433 (457)
T ss_pred cceeEEEcCCCCHHHHHHHHHHhcCCCC--Cc----chhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence 222 78888888888888887776533 12 3455666655666555555554 4544322 2333444444443
No 251
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.93 E-value=0.00091 Score=61.95 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=37.7
Q ss_pred cCceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhC
Q 048597 77 ERTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
...++||++.++.+...+..+ .-|.|.|++|+|||+||+.+..
T Consensus 19 ~~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hhhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHH
Confidence 456899999999999988877 7899999999999999988843
No 252
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.93 E-value=0.0035 Score=49.56 Aligned_cols=101 Identities=24% Similarity=0.300 Sum_probs=54.8
Q ss_pred ceEEEEEcCCCChHHHHHHHhhChhHHH----------------HHHHHHhCCCCCCcccCChHHHHHHHHHHhccCCeE
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRANLKKIQ----------------ADIGKKIGLSTKSWQENSFEDKALDIAGILSRKRFV 164 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~~~~~i~----------------~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~L 164 (294)
-.+++|+|+.|.|||||++.+....... ..+...+..... -..-+...-.+...+....-+
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q---lS~G~~~r~~l~~~l~~~~~i 101 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ---LSGGQRQRVALARALLLNPDL 101 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee---CCHHHHHHHHHHHHHhcCCCE
Confidence 3799999999999999999994332110 111111111000 111122233455556667889
Q ss_pred EEEccccCc---cchhhhcCCcCC-CCCCcEEEEecCChHHhhc
Q 048597 165 LLLDDIWEH---INLNKLGVPLQY-LHLGSKIVFTTNSRVVCGQ 204 (294)
Q Consensus 165 lvlDdv~~~---~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~~ 204 (294)
+++|+.-.. .....+...+.. ...+..++++|.+......
T Consensus 102 ~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 102 LLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 999998652 222222222211 1124678888887766544
No 253
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=96.92 E-value=0.004 Score=52.31 Aligned_cols=22 Identities=45% Similarity=0.756 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l 46 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMI 46 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999998
No 254
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=96.92 E-value=0.0038 Score=57.93 Aligned_cols=40 Identities=23% Similarity=0.201 Sum_probs=27.2
Q ss_pred eehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHh
Q 048597 81 IRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 81 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
+|.+... -+-..|.-+-+.-..|+++||.|+|||||.+.+
T Consensus 397 F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~ 436 (614)
T KOG0927|consen 397 FGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLI 436 (614)
T ss_pred cCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHH
Confidence 4554433 333334333334578999999999999999988
No 255
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.92 E-value=0.0049 Score=50.88 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|.|||||.+.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l 46 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRIL 46 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4479999999999999999998
No 256
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.92 E-value=0.0011 Score=51.89 Aligned_cols=37 Identities=27% Similarity=0.460 Sum_probs=31.3
Q ss_pred EEEEEcCCCChHHHHHHHh--------hChhHHHHHHHHHhCCCC
Q 048597 103 IIGLYGTGGVGKTTLLKQR--------ANLKKIQADIGKKIGLST 139 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v--------~~~~~i~~~i~~~~~~~~ 139 (294)
+|.|.|++|+||||+|+.+ ++.-.++++++...+++-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCH
Confidence 6899999999999999998 344478899998888753
No 257
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.92 E-value=0.0012 Score=60.49 Aligned_cols=46 Identities=30% Similarity=0.268 Sum_probs=34.5
Q ss_pred cCceeehhHHHHHHHHHHhc----------CC------CCceEEEEEcCCCChHHHHHHHhh
Q 048597 77 ERTVIRQELLLDRVWRFVTD----------QE------RNRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~----------~~------~~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...++|.++.++.+...+.. .. -....|.++||+|+|||+||+.+.
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA 137 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLA 137 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHH
Confidence 45689999988888766521 10 013579999999999999999984
No 258
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.92 E-value=0.0049 Score=48.38 Aligned_cols=19 Identities=37% Similarity=0.566 Sum_probs=17.6
Q ss_pred EEEEEcCCCChHHHHHHHh
Q 048597 103 IIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v 121 (294)
+|.|+|.+|+|||||++.+
T Consensus 1 ~i~i~G~~GsGKSTla~~L 19 (149)
T cd02027 1 VIWLTGLSGSGKSTIARAL 19 (149)
T ss_pred CEEEEcCCCCCHHHHHHHH
Confidence 5789999999999999988
No 259
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=96.92 E-value=0.0073 Score=54.18 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|.|||||++.+
T Consensus 66 ~Gei~gLlGpNGaGKSTLl~~L 87 (340)
T PRK13536 66 SGECFGLLGPNGAGKSTIARMI 87 (340)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4479999999999999999999
No 260
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.023 Score=55.00 Aligned_cols=90 Identities=22% Similarity=0.161 Sum_probs=54.6
Q ss_pred CceeehhHHHHHHHHHHhc----------CCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCc----c
Q 048597 78 RTVIRQELLLDRVWRFVTD----------QERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSW----Q 143 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~----~ 143 (294)
+.+-|.++.+.+|.+-+.- +-.+.+-|.++||+|.|||-||++|...-.+. .+.+.+.+. -
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~-----FlSVKGPELLNMYV 746 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN-----FLSVKGPELLNMYV 746 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee-----EEeecCHHHHHHHh
Confidence 3466888888888877643 12346789999999999999999993321110 000111100 1
Q ss_pred cCChHHHHHHHHHHhccCCeEEEEccccC
Q 048597 144 ENSFEDKALDIAGILSRKRFVLLLDDIWE 172 (294)
Q Consensus 144 ~~~~~~~~~~l~~~l~~kr~LlvlDdv~~ 172 (294)
..+++...+.+.+.=..+.|+|++|++++
T Consensus 747 GqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 747 GQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred cchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 12233333333333357899999999976
No 261
>PRK08233 hypothetical protein; Provisional
Probab=96.92 E-value=0.00074 Score=54.60 Aligned_cols=22 Identities=36% Similarity=0.441 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCChHHHHHHHhh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..+|+|.|++|+||||||+.+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~ 24 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLT 24 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4799999999999999999883
No 262
>PTZ00301 uridine kinase; Provisional
Probab=96.91 E-value=0.00075 Score=56.16 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=19.1
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
..+|+|.|++|+||||||+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l 23 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNI 23 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHH
Confidence 579999999999999999766
No 263
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.90 E-value=0.0057 Score=54.22 Aligned_cols=138 Identities=17% Similarity=0.139 Sum_probs=73.2
Q ss_pred eeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhH--------------HHHHHHHHhC-----CCCC
Q 048597 80 VIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKK--------------IQADIGKKIG-----LSTK 140 (294)
Q Consensus 80 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~--------------i~~~i~~~~~-----~~~~ 140 (294)
++|-+....++..+..........+.++||+|+||||+|..+....- ....+...-. +..+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 56777788888888875433444699999999999999988721110 0001110000 1111
Q ss_pred CcccCC-hHHHHHHHHHHh-----ccCCeEEEEccccCc--cchhhhcCCcCCCCCCcEEEEecCCh-HHhhccCC--ce
Q 048597 141 SWQENS-FEDKALDIAGIL-----SRKRFVLLLDDIWEH--INLNKLGVPLQYLHLGSKIVFTTNSR-VVCGQMEA--TM 209 (294)
Q Consensus 141 ~~~~~~-~~~~~~~l~~~l-----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~--~~ 209 (294)
.....+ ..+....+.+.. .++.-++++|++... +.-..+...+......+.+|++|... .+...+.. ..
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~~ 162 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQR 162 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhccee
Confidence 101111 223333333333 256789999999763 33444444444445567788777733 33222222 22
Q ss_pred eecCCCCH
Q 048597 210 LNASPLRD 217 (294)
Q Consensus 210 ~~l~~L~~ 217 (294)
+++.+.+.
T Consensus 163 i~f~~~~~ 170 (325)
T COG0470 163 IRFKPPSR 170 (325)
T ss_pred eecCCchH
Confidence 66666433
No 264
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.90 E-value=0.0011 Score=56.00 Aligned_cols=21 Identities=38% Similarity=0.450 Sum_probs=18.6
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.++|+|++|+|||||+..+
T Consensus 13 ~fr~viIG~sGSGKT~li~~l 33 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSL 33 (241)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 357889999999999998887
No 265
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.89 E-value=0.0027 Score=62.42 Aligned_cols=45 Identities=16% Similarity=0.215 Sum_probs=36.9
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhh
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..++|....+..+.+.+..-......|.|+|+.|+|||++|+.+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih 420 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIH 420 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHH
Confidence 358999988888877776543355789999999999999999983
No 266
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.89 E-value=0.0054 Score=51.86 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l 48 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLI 48 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999998
No 267
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.88 E-value=0.0061 Score=51.83 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|.|++|+|||||++.+
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l 48 (242)
T TIGR03411 27 PGELRVIIGPNGAGKTTMMDVI 48 (242)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3478999999999999999999
No 268
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.87 E-value=0.0011 Score=63.42 Aligned_cols=64 Identities=27% Similarity=0.319 Sum_probs=41.5
Q ss_pred CceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCc---ccCChHHHHHHHHHHhc--------cCCeEEEEc
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSW---QENSFEDKALDIAGILS--------RKRFVLLLD 168 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~---~~~~~~~~~~~l~~~l~--------~kr~LlvlD 168 (294)
..++..++|++|+||||||+.| +.+.|.+.-+. +..+...+-++|...++ .+...||+|
T Consensus 325 ~kKilLL~GppGlGKTTLAHVi----------AkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViD 394 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVI----------AKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVID 394 (877)
T ss_pred ccceEEeecCCCCChhHHHHHH----------HHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEe
Confidence 4679999999999999999765 44555432221 22333444445554443 456679999
Q ss_pred cccCc
Q 048597 169 DIWEH 173 (294)
Q Consensus 169 dv~~~ 173 (294)
++...
T Consensus 395 EIDGa 399 (877)
T KOG1969|consen 395 EIDGA 399 (877)
T ss_pred cccCC
Confidence 99763
No 269
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.86 E-value=0.0072 Score=50.62 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l 50 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLAL 50 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999998
No 270
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=96.86 E-value=0.0045 Score=54.70 Aligned_cols=21 Identities=43% Similarity=0.627 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-.+++|.|++|.|||||++.+
T Consensus 33 Gei~gllGpNGaGKSTLl~~l 53 (306)
T PRK13537 33 GECFGLLGPNGAGKTTTLRML 53 (306)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 469999999999999999999
No 271
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.86 E-value=0.0034 Score=54.71 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l 53 (279)
T PRK13650 32 QGEWLSIIGHNGSGKSTTVRLI 53 (279)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4479999999999999999999
No 272
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=96.86 E-value=0.0038 Score=56.08 Aligned_cols=22 Identities=36% Similarity=0.658 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 30 ~Gei~~iiG~nGsGKSTLlk~L 51 (343)
T PRK11153 30 AGEIFGVIGASGAGKSTLIRCI 51 (343)
T ss_pred CCCEEEEECCCCCcHHHHHHHH
Confidence 3479999999999999999999
No 273
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.85 E-value=0.0059 Score=48.44 Aligned_cols=21 Identities=43% Similarity=0.626 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-..+.|.||+|+|||||.+.+
T Consensus 29 Ge~iaitGPSG~GKStllk~v 49 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIV 49 (223)
T ss_pred CceEEEeCCCCccHHHHHHHH
Confidence 468999999999999999999
No 274
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.85 E-value=0.00085 Score=45.28 Aligned_cols=21 Identities=43% Similarity=0.653 Sum_probs=17.8
Q ss_pred EEEEEcCCCChHHHHHHHhhC
Q 048597 103 IIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v~~ 123 (294)
+|.|.|++|+||||+++.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999977643
No 275
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.84 E-value=0.0032 Score=61.59 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-..|+|+|.+|+|||||+|.+
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL 519 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLL 519 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4478999999999999999999
No 276
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.83 E-value=0.002 Score=54.14 Aligned_cols=158 Identities=15% Similarity=0.205 Sum_probs=78.2
Q ss_pred CceEEEEEcCCCChHHHHHHHhhCh----------------hHHHHHHHHHhCCCCCCcc-cCChHHHHHHHHHHh--cc
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANL----------------KKIQADIGKKIGLSTKSWQ-ENSFEDKALDIAGIL--SR 160 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~----------------~~i~~~i~~~~~~~~~~~~-~~~~~~~~~~l~~~l--~~ 160 (294)
+.+++.|.|+.|.||||+.+.+.-. ..+...+...++....... -+....-...+...+ -.
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~il~~~~ 108 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPIVDCILARVGASDSQLKGVSTFMAEMLETAAILKSAT 108 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEEeccceeEeeeccccchhcCcChHHHHHHHHHHHHHhCC
Confidence 4579999999999999999998411 0011112222221111000 011111222233333 35
Q ss_pred CCeEEEEcccc---Cccc-----hhhhcCCcCCCCCCcEEEEecCChHHhhccCCce----eecCCCCHH--HHHHHHHH
Q 048597 161 KRFVLLLDDIW---EHIN-----LNKLGVPLQYLHLGSKIVFTTNSRVVCGQMEATM----LNASPLRDE--EAWRLFEE 226 (294)
Q Consensus 161 kr~LlvlDdv~---~~~~-----~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~----~~l~~L~~~--~~~~Lf~~ 226 (294)
.+-|++||+.- +..+ |..+ ..+.. ..|+.+|++|....+...+.... .++.....+ +... |.-
T Consensus 109 ~~sLvLLDEp~~gT~~lD~~~~~~~il-~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~~~~~~~~-~~Y 185 (222)
T cd03285 109 ENSLIIIDELGRGTSTYDGFGLAWAIA-EYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTDDASRTLT-MLY 185 (222)
T ss_pred CCeEEEEecCcCCCChHHHHHHHHHHH-HHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEeCCCCcEe-EEE
Confidence 68899999993 3221 2111 12221 24678999999776655433221 333221111 1110 111
Q ss_pred HhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHHHHHcC
Q 048597 227 AVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVGRAMRS 266 (294)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~~L~~ 266 (294)
++.. .. +. ...|-.+++.+ |+|-.+..-|.-+..
T Consensus 186 ~l~~-G~-~~---~s~a~~~a~~~-g~p~~vi~~A~~~~~ 219 (222)
T cd03285 186 KVEK-GA-CD---QSFGIHVAELA-NFPKEVIEMAKQKAL 219 (222)
T ss_pred EEee-CC-CC---CcHHHHHHHHh-CcCHHHHHHHHHHHH
Confidence 1111 10 11 24577787776 899998888876654
No 277
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=96.82 E-value=0.0043 Score=55.70 Aligned_cols=22 Identities=36% Similarity=0.635 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 30 ~Gei~gIiG~sGaGKSTLlr~I 51 (343)
T TIGR02314 30 AGQIYGVIGASGAGKSTLIRCV 51 (343)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999999
No 278
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.82 E-value=0.0091 Score=54.22 Aligned_cols=22 Identities=45% Similarity=0.607 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
--+.|+||||.|+|||||.+.+
T Consensus 612 mdSRiaIVGPNGVGKSTlLkLL 633 (807)
T KOG0066|consen 612 MDSRIAIVGPNGVGKSTLLKLL 633 (807)
T ss_pred ccceeEEECCCCccHHHHHHHH
Confidence 4578999999999999999988
No 279
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.80 E-value=0.0052 Score=51.98 Aligned_cols=22 Identities=41% Similarity=0.594 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|.|||||++.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l 46 (232)
T cd03300 25 EGEFFTLLGPSGCGKTTLLRLI 46 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999999
No 280
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.78 E-value=0.00085 Score=55.29 Aligned_cols=21 Identities=43% Similarity=0.678 Sum_probs=18.7
Q ss_pred EEEEEcCCCChHHHHHHHhhC
Q 048597 103 IIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v~~ 123 (294)
+|+|.|++|+|||||++.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998843
No 281
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.77 E-value=0.0028 Score=51.80 Aligned_cols=21 Identities=48% Similarity=0.512 Sum_probs=18.6
Q ss_pred eEEEEEcCCCChHHHHHHHhh
Q 048597 102 GIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~ 122 (294)
+.|.+.|++|+||||+|+.+.
T Consensus 2 pLiIlTGyPgsGKTtfakeLa 22 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELA 22 (261)
T ss_pred ceEEEecCCCCCchHHHHHHH
Confidence 568899999999999999873
No 282
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.77 E-value=0.0011 Score=53.97 Aligned_cols=23 Identities=30% Similarity=0.291 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
+.++|.|+|++|+||||+++.+.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999999883
No 283
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.77 E-value=0.0012 Score=53.84 Aligned_cols=152 Identities=20% Similarity=0.172 Sum_probs=73.2
Q ss_pred EEEEEcCCCChHHHHHHHhhChhHHHHHH-----------------HHHhCCCCCCc-ccCChHHHHHHHHHHhcc--CC
Q 048597 103 IIGLYGTGGVGKTTLLKQRANLKKIQADI-----------------GKKIGLSTKSW-QENSFEDKALDIAGILSR--KR 162 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v~~~~~i~~~i-----------------~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~--kr 162 (294)
++.|+|+.|.||||+++.+.-.. ++.+. ...++...... .......-...+...+.. ++
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~-~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~ 79 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIV-IMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATEN 79 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH-HHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCC
Confidence 46799999999999999984111 11111 11111110000 011122222334444444 78
Q ss_pred eEEEEccccCccch-------hhhcCCcCCCCCCcEEEEecCChHHhhccCCc---e-eecCCCCHHHHHHHHHHHhCCC
Q 048597 163 FVLLLDDIWEHINL-------NKLGVPLQYLHLGSKIVFTTNSRVVCGQMEAT---M-LNASPLRDEEAWRLFEEAVGRY 231 (294)
Q Consensus 163 ~LlvlDdv~~~~~~-------~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~---~-~~l~~L~~~~~~~Lf~~~~~~~ 231 (294)
-++++|+.-...+. ..+...+.. ..++.+|++|...++...+... . +++.-..+++. -.|..++..
T Consensus 80 ~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~-~~~~Y~l~~- 156 (185)
T smart00534 80 SLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLADEHPGVRNLHMSADEETEN-LTFLYKLTP- 156 (185)
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHhhcCccceEEEEEEEEecCc-eeEEEEEeE-
Confidence 89999998652211 111122211 2367899999988775543221 1 33322111111 001111111
Q ss_pred CCCCCCCHHHHHHHHHHhCCCChHHHHHHHHH
Q 048597 232 VLDSHPDIPELAKTMAEECCCLPLALKTVGRA 263 (294)
Q Consensus 232 ~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~~ 263 (294)
. ......|-.+++++ |+|-.+..-|..
T Consensus 157 G----~~~~s~a~~~a~~~-g~~~~i~~~a~~ 183 (185)
T smart00534 157 G----VAGKSYGIEVAKLA-GLPKEVIERAKE 183 (185)
T ss_pred C----CCCCcHHHHHHHHh-CCCHHHHHHHHH
Confidence 1 11123677788777 688877766643
No 284
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.75 E-value=0.0042 Score=61.26 Aligned_cols=22 Identities=36% Similarity=0.449 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-..++|+|++|+|||||++.+
T Consensus 490 ~G~~iaIvG~sGsGKSTLlklL 511 (694)
T TIGR03375 490 PGEKVAIIGRIGSGKSTLLKLL 511 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4478999999999999999998
No 285
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.75 E-value=0.0062 Score=52.27 Aligned_cols=39 Identities=28% Similarity=0.257 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhh
Q 048597 83 QELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 83 r~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
+...+..+......-+ +..-+.++|++|+|||.||..+-
T Consensus 88 ~~~~l~~~~~~~~~~~-~~~nl~l~G~~G~GKThLa~Ai~ 126 (254)
T COG1484 88 DKKALEDLASLVEFFE-RGENLVLLGPPGVGKTHLAIAIG 126 (254)
T ss_pred hHHHHHHHHHHHHHhc-cCCcEEEECCCCCcHHHHHHHHH
Confidence 3344444443332222 56789999999999999998883
No 286
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.74 E-value=0.0011 Score=52.04 Aligned_cols=22 Identities=41% Similarity=0.360 Sum_probs=19.7
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...-|+|.||+|+|||||++.+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki 25 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKI 25 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHH
Confidence 3467999999999999999988
No 287
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=96.74 E-value=0.0053 Score=58.52 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-..++|+|++|+|||||++.+
T Consensus 347 ~G~~~~ivG~sGsGKSTL~~ll 368 (529)
T TIGR02857 347 PGERVALVGPSGAGKSTLLNLL 368 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999998
No 288
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.74 E-value=0.0042 Score=60.01 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
+-..++|+|++|+|||||++.+
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL 381 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLL 381 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4578999999999999999998
No 289
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.73 E-value=0.0017 Score=56.61 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.+.+|+|.|++|+||||+|+.+
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L 82 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARIL 82 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 5789999999999999999876
No 290
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.73 E-value=0.0029 Score=48.48 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhh
Q 048597 86 LLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 86 ~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
+..++-..|...=..-.+|.+.|+-|+|||||++.+.
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~ 43 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLL 43 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4444444454322234699999999999999998873
No 291
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.72 E-value=0.0078 Score=56.95 Aligned_cols=57 Identities=21% Similarity=0.296 Sum_probs=35.1
Q ss_pred HHHHHHHhccCCeEEEEccccCccchh---hhcCCcCCCCCCcEEEEecCChHHhhccCCce
Q 048597 151 ALDIAGILSRKRFVLLLDDIWEHINLN---KLGVPLQYLHLGSKIVFTTNSRVVCGQMEATM 209 (294)
Q Consensus 151 ~~~l~~~l~~kr~LlvlDdv~~~~~~~---~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~ 209 (294)
.-.|.+.|-.+.=+|+||+--+.-+.+ .+...+. .-+| .+|+.|.+......+.+..
T Consensus 161 Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~-~~~g-tviiVSHDR~FLd~V~t~I 220 (530)
T COG0488 161 RVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLK-RYPG-TVIVVSHDRYFLDNVATHI 220 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH-hCCC-cEEEEeCCHHHHHHHhhhe
Confidence 334666667788899999887643322 2223332 2335 6999999987655554443
No 292
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.72 E-value=0.0072 Score=48.57 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|.|++|.|||||.+.|
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLI 45 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLI 45 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHH
Confidence 3479999999999999999999
No 293
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.71 E-value=0.0054 Score=48.35 Aligned_cols=21 Identities=43% Similarity=0.449 Sum_probs=19.1
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
..+|-|.|.+|+||||||+.+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L 22 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARAL 22 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999998
No 294
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.71 E-value=0.0046 Score=58.92 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-..++|+|++|+|||||++.+
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL 381 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLL 381 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 5579999999999999999999
No 295
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=96.69 E-value=0.0035 Score=56.51 Aligned_cols=59 Identities=19% Similarity=0.296 Sum_probs=35.2
Q ss_pred HHHHHHHhccCCeEEEEccccCc-cchh--hhcCCcCC--CCCCcEEEEecCChHHhhccCCce
Q 048597 151 ALDIAGILSRKRFVLLLDDIWEH-INLN--KLGVPLQY--LHLGSKIVFTTNSRVVCGQMEATM 209 (294)
Q Consensus 151 ~~~l~~~l~~kr~LlvlDdv~~~-~~~~--~l~~~l~~--~~~gs~iivTtr~~~v~~~~~~~~ 209 (294)
..+|.+.+..+.-+++.|..... +... .+...+.. ...|+.+++.|+..++.+......
T Consensus 515 R~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~ 578 (593)
T COG2401 515 RAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDT 578 (593)
T ss_pred HHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCce
Confidence 44677777888889999987542 1111 11111111 224778888888888876665443
No 296
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.69 E-value=0.0044 Score=59.76 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-..++|+|++|+|||||++.+
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll 389 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLL 389 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4468999999999999999999
No 297
>PRK06921 hypothetical protein; Provisional
Probab=96.69 E-value=0.005 Score=53.25 Aligned_cols=24 Identities=46% Similarity=0.642 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
....+.++|+.|+|||+|+..+.+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~ 139 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAAN 139 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 356799999999999999988854
No 298
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0023 Score=55.75 Aligned_cols=124 Identities=17% Similarity=0.186 Sum_probs=68.7
Q ss_pred CceEEEEEcCCCChHHHHHHHhhChhHH----------------HHHHHHHhCCCCCCcccCChHHHHHHHHHHhccCCe
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANLKKI----------------QADIGKKIGLSTKSWQENSFEDKALDIAGILSRKRF 163 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~~~i----------------~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~ 163 (294)
..++|.++||+|.|||+|.+.+.....| ..-|..++.- .......+..+|.+.+.++..
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsE-----SgKlV~kmF~kI~ELv~d~~~ 250 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSE-----SGKLVAKMFQKIQELVEDRGN 250 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhh-----hhhHHHHHHHHHHHHHhCCCc
Confidence 3589999999999999999888221111 1122333322 123455666777787776654
Q ss_pred --EEEEccccCcc-----------chhhh------cCCcCC-CCCCcEEEEecCCh----HHhhccCCce-eecCCCCHH
Q 048597 164 --VLLLDDIWEHI-----------NLNKL------GVPLQY-LHLGSKIVFTTNSR----VVCGQMEATM-LNASPLRDE 218 (294)
Q Consensus 164 --LlvlDdv~~~~-----------~~~~l------~~~l~~-~~~gs~iivTtr~~----~v~~~~~~~~-~~l~~L~~~ 218 (294)
++.+|+|.+.. .-+.+ ...+.. ......+|+||.+- ++|-.-.+.- ..+++-+.+
T Consensus 251 lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ 330 (423)
T KOG0744|consen 251 LVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAE 330 (423)
T ss_pred EEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhhHhhheeecCCccHH
Confidence 45689996521 11111 001110 11123466666542 2333333333 678888888
Q ss_pred HHHHHHHHHh
Q 048597 219 EAWRLFEEAV 228 (294)
Q Consensus 219 ~~~~Lf~~~~ 228 (294)
...++++.+.
T Consensus 331 ai~~Ilksci 340 (423)
T KOG0744|consen 331 AIYEILKSCI 340 (423)
T ss_pred HHHHHHHHHH
Confidence 7777777653
No 299
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.68 E-value=0.002 Score=59.21 Aligned_cols=41 Identities=27% Similarity=0.317 Sum_probs=35.2
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhh
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..+++.+...+.+...|... ..+.++|++|+|||++|+.+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la 215 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLA 215 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHH
Confidence 34678888999999998865 688889999999999999884
No 300
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.68 E-value=0.0029 Score=53.73 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHh
Q 048597 86 LLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 86 ~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+++..+.....+..+|+|.|++|+|||||+..+
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l 49 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDAL 49 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHH
Confidence 445666667666567889999999999999998776
No 301
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.67 E-value=0.0011 Score=55.77 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHhhC
Q 048597 103 IIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v~~ 123 (294)
+|+|.|++|+||||||+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999988843
No 302
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=96.66 E-value=0.0059 Score=55.41 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLL~~i 49 (369)
T PRK11000 28 EGEFVVFVGPSGCGKSTLLRMI 49 (369)
T ss_pred CCCEEEEECCCCCcHHHHHHHH
Confidence 3469999999999999999999
No 303
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=96.66 E-value=0.0047 Score=55.78 Aligned_cols=21 Identities=43% Similarity=0.604 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-.+++|+|++|+|||||.+.+
T Consensus 30 Ge~~~llG~sGsGKSTLLr~i 50 (356)
T PRK11650 30 GEFIVLVGPSGCGKSTLLRMV 50 (356)
T ss_pred CCEEEEECCCCCcHHHHHHHH
Confidence 468999999999999999999
No 304
>PRK10867 signal recognition particle protein; Provisional
Probab=96.66 E-value=0.014 Score=53.89 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=18.9
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.+.+|.++|++|+||||++..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakL 120 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKL 120 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHH
Confidence 4789999999999999966655
No 305
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.66 E-value=0.0072 Score=50.62 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
+-.+.+|+|++|+|||||.+.+
T Consensus 33 ~Gei~~iiGgSGsGKStlLr~I 54 (263)
T COG1127 33 RGEILAILGGSGSGKSTLLRLI 54 (263)
T ss_pred CCcEEEEECCCCcCHHHHHHHH
Confidence 4579999999999999999999
No 306
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.65 E-value=0.0067 Score=52.99 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|.|||||++.+
T Consensus 31 ~Ge~~~i~G~nGaGKSTLl~~i 52 (283)
T PRK13636 31 KGEVTAILGGNGAGKSTLFQNL 52 (283)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999999
No 307
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.65 E-value=0.0014 Score=52.95 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=19.3
Q ss_pred eEEEEEcCCCChHHHHHHHhhC
Q 048597 102 GIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
.++.|+|++|+|||||++.+..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998743
No 308
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.65 E-value=0.012 Score=45.92 Aligned_cols=19 Identities=42% Similarity=0.543 Sum_probs=17.5
Q ss_pred EEEEEcCCCChHHHHHHHh
Q 048597 103 IIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v 121 (294)
++.+.|++|+||||+|+.+
T Consensus 1 li~l~G~~GsGKST~a~~l 19 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKAL 19 (150)
T ss_pred CEEEEcCCCCCHHHHHHHH
Confidence 4789999999999999988
No 309
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.64 E-value=0.004 Score=50.11 Aligned_cols=25 Identities=40% Similarity=0.453 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCChHHHHHHHhhChh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRANLK 125 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~~~~ 125 (294)
...+.|.||+|+|||||++.++...
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4689999999999999999886544
No 310
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.033 Score=53.09 Aligned_cols=168 Identities=15% Similarity=0.072 Sum_probs=86.8
Q ss_pred CceeehhHH---HHHHHHHHhcCC-------CCceEEEEEcCCCChHHHHHHHhhChhHHH------HHHHHHhCCCCCC
Q 048597 78 RTVIRQELL---LDRVWRFVTDQE-------RNRGIIGLYGTGGVGKTTLLKQRANLKKIQ------ADIGKKIGLSTKS 141 (294)
Q Consensus 78 ~~~vGr~~~---~~~l~~~L~~~~-------~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~------~~i~~~~~~~~~~ 141 (294)
..+-|.++. +.++++.|.++. .-++-|.++||+|.|||.||+.+.....+- .+|.+.+ +
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf-V---- 224 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF-V---- 224 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh-c----
Confidence 345687754 555666666543 346789999999999999999995544332 1222222 1
Q ss_pred cccCChHHHHHHHHHHhccCCeEEEEccccCc------------cchhh----hcCCcCC--CCCCcEEEEecCChHHh-
Q 048597 142 WQENSFEDKALDIAGILSRKRFVLLLDDIWEH------------INLNK----LGVPLQY--LHLGSKIVFTTNSRVVC- 202 (294)
Q Consensus 142 ~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~------------~~~~~----l~~~l~~--~~~gs~iivTtr~~~v~- 202 (294)
..........+.+..+.-+|++++|.+... +.+++ +..-... .+.|-.|+..|...+|.
T Consensus 225 --GvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 225 --GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred --CCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 111122233344444666899999988641 12322 2111111 22343344444444442
Q ss_pred ----hccCCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHH
Q 048597 203 ----GQMEATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLA 256 (294)
Q Consensus 203 ----~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla 256 (294)
....... +.++.-+-..-.++++-++-.......-++ +.|++.+-|.--|
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl----~~iAr~tpGfsGA 357 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDL----KKIARGTPGFSGA 357 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCH----HHHhhhCCCcccc
Confidence 1112222 556655555566666655533332222233 2377777776543
No 311
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.64 E-value=0.0016 Score=54.07 Aligned_cols=28 Identities=21% Similarity=0.413 Sum_probs=23.1
Q ss_pred cCCCCceEEEEEcCCCChHHHHHHHhhC
Q 048597 96 DQERNRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 96 ~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
.......+|.|+|++|+|||||++.+..
T Consensus 8 ~~~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 8 NKPAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 3344678999999999999999988843
No 312
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=96.63 E-value=0.0073 Score=54.47 Aligned_cols=21 Identities=43% Similarity=0.623 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-.+++|+|++|+|||||.+.+
T Consensus 30 Ge~~~l~GpsGsGKSTLLr~i 50 (353)
T TIGR03265 30 GEFVCLLGPSGCGKTTLLRII 50 (353)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 469999999999999999999
No 313
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=96.62 E-value=0.007 Score=55.00 Aligned_cols=22 Identities=41% Similarity=0.632 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||.+.+
T Consensus 39 ~Ge~~~LlGpsGsGKSTLLr~I 60 (375)
T PRK09452 39 NGEFLTLLGPSGCGKTTVLRLI 60 (375)
T ss_pred CCCEEEEECCCCCcHHHHHHHH
Confidence 3469999999999999999999
No 314
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=96.62 E-value=0.0079 Score=54.19 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 31 ~Ge~~~llGpsGsGKSTLLr~I 52 (351)
T PRK11432 31 QGTMVTLLGPSGCGKTTVLRLV 52 (351)
T ss_pred CCCEEEEECCCCCcHHHHHHHH
Confidence 3469999999999999999999
No 315
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.61 E-value=0.01 Score=50.66 Aligned_cols=75 Identities=15% Similarity=0.126 Sum_probs=40.6
Q ss_pred HHHHhccCCeEEEEccccCc---cchhhhcCCcC--CCCCCcEEEEecCC-hHHhhccCCce-eecCCCCHHHHHHHHHH
Q 048597 154 IAGILSRKRFVLLLDDIWEH---INLNKLGVPLQ--YLHLGSKIVFTTNS-RVVCGQMEATM-LNASPLRDEEAWRLFEE 226 (294)
Q Consensus 154 l~~~l~~kr~LlvlDdv~~~---~~~~~l~~~l~--~~~~gs~iivTtr~-~~v~~~~~~~~-~~l~~L~~~~~~~Lf~~ 226 (294)
|...|-.+.-+++||+.--. ..-..++..+. ....++.|++||.. .+++..+...- +.-+.+=.+....-|+.
T Consensus 167 LaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~ 246 (325)
T COG4586 167 LAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQE 246 (325)
T ss_pred HHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHH
Confidence 33444466778999976321 11112222221 24467899999986 45666655444 66655544444444444
Q ss_pred Hh
Q 048597 227 AV 228 (294)
Q Consensus 227 ~~ 228 (294)
.+
T Consensus 247 ~f 248 (325)
T COG4586 247 QF 248 (325)
T ss_pred Hh
Confidence 44
No 316
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.60 E-value=0.015 Score=53.84 Aligned_cols=22 Identities=36% Similarity=0.347 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.+.+|.++|++|+||||++..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakL 115 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKL 115 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHH
Confidence 5789999999999999999887
No 317
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.60 E-value=0.0019 Score=47.51 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCChHHHHHHHhh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
-..++|+|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4789999999999999998864
No 318
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=96.60 E-value=0.0052 Score=59.08 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-..++|+|+.|+|||||++.+
T Consensus 357 ~G~~v~IvG~sGsGKSTLl~lL 378 (571)
T TIGR02203 357 PGETVALVGRSGSGKSTLVNLI 378 (571)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999998
No 319
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.59 E-value=0.011 Score=51.68 Aligned_cols=22 Identities=50% Similarity=0.739 Sum_probs=19.6
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...++.++|++|+||||++..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kL 214 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKL 214 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4569999999999999998777
No 320
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.58 E-value=0.0017 Score=52.97 Aligned_cols=80 Identities=20% Similarity=0.157 Sum_probs=44.9
Q ss_pred ceEEEEEcCCCChHHHHHHHhhChhHHHHHH-----HHHhCCCC----------CCcccCChHHHHHHHHHHhccCCeEE
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRANLKKIQADI-----GKKIGLST----------KSWQENSFEDKALDIAGILSRKRFVL 165 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i-----~~~~~~~~----------~~~~~~~~~~~~~~l~~~l~~kr~Ll 165 (294)
-..+.|+|+.|+|||||++.+.........+ ...+..+. ..............+...++..+=.+
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i 104 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRI 104 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEE
Confidence 4789999999999999999873321100000 00000000 00001112234455666677777888
Q ss_pred EEccccCccchhhhc
Q 048597 166 LLDDIWEHINLNKLG 180 (294)
Q Consensus 166 vlDdv~~~~~~~~l~ 180 (294)
+++++.+.+.+..+.
T Consensus 105 ~igEir~~ea~~~~~ 119 (186)
T cd01130 105 IVGEVRGGEALDLLQ 119 (186)
T ss_pred EEEccCcHHHHHHHH
Confidence 899998877666443
No 321
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.58 E-value=0.0047 Score=46.61 Aligned_cols=44 Identities=20% Similarity=0.298 Sum_probs=33.5
Q ss_pred CceeehhHHHHHHHHHHhc-----CCCCceEEEEEcCCCChHHHHHHHh
Q 048597 78 RTVIRQELLLDRVWRFVTD-----QERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~-----~~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
..++|..-..+.+++.+.+ .+.++-|++.+|++|+|||.+++.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~li 73 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLI 73 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHH
Confidence 4578877666666665543 2457789999999999999998877
No 322
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.56 E-value=0.0021 Score=51.67 Aligned_cols=24 Identities=33% Similarity=0.392 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
...+++|+|+.|+|||||++.+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 567999999999999999987743
No 323
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.54 E-value=0.02 Score=52.84 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=19.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.+.++.++|++|+||||++..+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakL 119 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKL 119 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHH
Confidence 4679999999999999996666
No 324
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.54 E-value=0.014 Score=50.23 Aligned_cols=22 Identities=50% Similarity=0.798 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|.|||||++.+
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i 56 (257)
T PRK14246 35 NNSIFGIMGPSGSGKSTLLKVL 56 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999998
No 325
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.54 E-value=0.0084 Score=57.93 Aligned_cols=22 Identities=41% Similarity=0.557 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
+-..++|+|++|+|||||++.+
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL 396 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNAL 396 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999998
No 326
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.032 Score=49.97 Aligned_cols=25 Identities=36% Similarity=0.353 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHhhC
Q 048597 99 RNRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 99 ~~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
..-+-|.++||+|.|||-||+.|+.
T Consensus 243 rPWkgvLm~GPPGTGKTlLAKAvAT 267 (491)
T KOG0738|consen 243 RPWKGVLMVGPPGTGKTLLAKAVAT 267 (491)
T ss_pred cccceeeeeCCCCCcHHHHHHHHHH
Confidence 3567899999999999999999943
No 327
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=96.53 E-value=0.01 Score=49.63 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=27.3
Q ss_pred cCCeEEEEccccCc---cchhhhcCCcCCCCCCcEEEEecCChHHhhcc
Q 048597 160 RKRFVLLLDDIWEH---INLNKLGVPLQYLHLGSKIVFTTNSRVVCGQM 205 (294)
Q Consensus 160 ~kr~LlvlDdv~~~---~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~ 205 (294)
+..-+++|||+... .....+...+......+.+||||..+.+...+
T Consensus 157 ~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a 205 (220)
T PF02463_consen 157 KPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDA 205 (220)
T ss_dssp S--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34568999999763 33344444444444468899999998886655
No 328
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.53 E-value=0.0019 Score=52.21 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=20.1
Q ss_pred eEEEEEcCCCChHHHHHHHhhC
Q 048597 102 GIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
.+|.|+|++|+|||||++.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999965
No 329
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.53 E-value=0.0067 Score=48.20 Aligned_cols=19 Identities=53% Similarity=0.705 Sum_probs=17.9
Q ss_pred EEEEEcCCCChHHHHHHHh
Q 048597 103 IIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v 121 (294)
.|+|.|.+|+||||+++.+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L 20 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLL 20 (180)
T ss_pred eEEEeCCCCCchHHHHHHH
Confidence 5899999999999999888
No 330
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.53 E-value=0.008 Score=48.29 Aligned_cols=19 Identities=47% Similarity=0.546 Sum_probs=17.4
Q ss_pred EEEEEcCCCChHHHHHHHh
Q 048597 103 IIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v 121 (294)
++.++|++|+||||++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~l 20 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKL 20 (173)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999998887
No 331
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.52 E-value=0.0036 Score=55.54 Aligned_cols=45 Identities=24% Similarity=0.353 Sum_probs=39.6
Q ss_pred cCceeehhHHHHHHHHHHhcC----CCCceEEEEEcCCCChHHHHHHHh
Q 048597 77 ERTVIRQELLLDRVWRFVTDQ----ERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...++|.++.++++++.+... +..-+++.++||.|.|||||+..+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~L 108 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELL 108 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHH
Confidence 457899999999999999764 346789999999999999999988
No 332
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=96.51 E-value=0.014 Score=57.02 Aligned_cols=22 Identities=45% Similarity=0.670 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 337 ~Ge~~~l~G~NGsGKSTLlk~l 358 (638)
T PRK10636 337 PGSRIGLLGRNGAGKSTLIKLL 358 (638)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999998
No 333
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=96.50 E-value=0.017 Score=48.59 Aligned_cols=20 Identities=40% Similarity=0.506 Sum_probs=18.5
Q ss_pred eEEEEEcCCCChHHHHHHHh
Q 048597 102 GIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v 121 (294)
.-..|+|++|.|||||++.+
T Consensus 58 e~W~I~G~NGsGKTTLL~ll 77 (257)
T COG1119 58 EHWAIVGPNGAGKTTLLSLL 77 (257)
T ss_pred CcEEEECCCCCCHHHHHHHH
Confidence 56789999999999999999
No 334
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.50 E-value=0.01 Score=52.76 Aligned_cols=21 Identities=38% Similarity=0.600 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-.++.++||+|+|||||.+.|
T Consensus 29 Gef~vllGPSGcGKSTlLr~I 49 (338)
T COG3839 29 GEFVVLLGPSGCGKSTLLRMI 49 (338)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999999
No 335
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.50 E-value=0.019 Score=52.31 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=19.6
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+|.++|+.|+||||.+..+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKL 194 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKL 194 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4679999999999999988777
No 336
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.50 E-value=0.0093 Score=53.88 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.++.++|+.|+||||++..+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakL 157 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKL 157 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3579999999999999999888
No 337
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.50 E-value=0.0053 Score=56.00 Aligned_cols=45 Identities=24% Similarity=0.280 Sum_probs=36.1
Q ss_pred cCceeehhHHHHHHHHHHhcC------------CCCceEEEEEcCCCChHHHHHHHh
Q 048597 77 ERTVIRQELLLDRVWRFVTDQ------------ERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...++|.+..+..+..++... +.....|.++|++|+||||||+.+
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~L 70 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRL 70 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHH
Confidence 456899999999888888541 112478999999999999999988
No 338
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.50 E-value=0.14 Score=45.25 Aligned_cols=49 Identities=22% Similarity=0.118 Sum_probs=33.9
Q ss_pred eeecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHH
Q 048597 209 MLNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLAL 257 (294)
Q Consensus 209 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 257 (294)
++++.+++.+|+..++.-............-+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 4789999999999998766644332222333455677777789999654
No 339
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.007 Score=58.08 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.++++|||+|.||||+|..+
T Consensus 493 pGe~vALVGPSGsGKSTiasLL 514 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTIASLL 514 (716)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4479999999999999999998
No 340
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.49 E-value=0.0043 Score=50.67 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
...+|.|+||+|+|||||++.+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~ 26 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLE 26 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 468999999999999999999844
No 341
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.49 E-value=0.0021 Score=52.45 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=19.2
Q ss_pred eEEEEEcCCCChHHHHHHHhh
Q 048597 102 GIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.++.|+|++|+|||||++.+.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~ 23 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALR 23 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999993
No 342
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.48 E-value=0.0034 Score=59.49 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=25.6
Q ss_pred HHHHhcCCCCceEEEEEcCCCChHHHHHHHhh
Q 048597 91 WRFVTDQERNRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 91 ~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
++.+.....+..+|+|.|++|+|||||++.+.
T Consensus 55 ~qlL~~~~~~riIIGIaGpSGSGKTTLAk~La 86 (656)
T PLN02318 55 CQLLAQKNDGIILVGVAGPSGAGKTVFTEKVL 86 (656)
T ss_pred HHHHHhcCCCeEEEEEECCCCCcHHHHHHHHH
Confidence 34444444467899999999999999999984
No 343
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=96.48 E-value=0.0097 Score=49.51 Aligned_cols=22 Identities=50% Similarity=0.715 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++++|++|+|||||.+.+
T Consensus 28 ~Geiv~llG~NGaGKTTlLkti 49 (237)
T COG0410 28 RGEIVALLGRNGAGKTTLLKTI 49 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999999
No 344
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.47 E-value=0.0084 Score=51.89 Aligned_cols=21 Identities=38% Similarity=0.297 Sum_probs=16.5
Q ss_pred eEEEEEcCCCChHHHHHHHhh
Q 048597 102 GIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~ 122 (294)
+.|.|.|.+|+||||+|+.+.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~ 22 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELK 22 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHH
Confidence 578999999999999999983
No 345
>PRK04040 adenylate kinase; Provisional
Probab=96.47 E-value=0.0023 Score=52.38 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=19.2
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
..+|.|+|++|+||||+++.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l 22 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKA 22 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHH
Confidence 368999999999999999987
No 346
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.47 E-value=0.0039 Score=50.04 Aligned_cols=43 Identities=16% Similarity=0.191 Sum_probs=32.8
Q ss_pred eeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhh
Q 048597 80 VIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 80 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
++|....+.++.+.+..-......|.|+|..|+||+.+|+.+.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH 43 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIH 43 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHH
Confidence 4788888888888887644455778899999999999999993
No 347
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.46 E-value=0.0023 Score=49.14 Aligned_cols=21 Identities=43% Similarity=0.680 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-.+++|+|+.|+|||||++.+
T Consensus 11 g~~~~i~G~nGsGKStLl~~l 31 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKAL 31 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHH
T ss_pred CCEEEEEccCCCccccceeee
Confidence 368999999999999999988
No 348
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=96.46 E-value=0.0084 Score=59.29 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-..++|+|++|+|||||++.+
T Consensus 499 ~G~~vaIvG~SGsGKSTLlklL 520 (708)
T TIGR01193 499 MNSKTTIVGMSGSGKSTLAKLL 520 (708)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999998
No 349
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=96.46 E-value=0.013 Score=57.91 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-..++|+|++|+|||||++.+
T Consensus 506 ~Ge~vaIvG~SGsGKSTLl~lL 527 (711)
T TIGR00958 506 PGEVVALVGPSGSGKSTVAALL 527 (711)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999998
No 350
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.036 Score=52.38 Aligned_cols=126 Identities=17% Similarity=0.122 Sum_probs=70.6
Q ss_pred CceEEEEEcCCCChHHHHHHHhhChhH-----HHHHHHHHhCCCCCCcccCChHHHHHHHHHHhccCCeEEEEccccCcc
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANLKK-----IQADIGKKIGLSTKSWQENSFEDKALDIAGILSRKRFVLLLDDIWEHI 174 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~~~-----i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~ 174 (294)
....+.++||+|+|||.||+.+.+... +... ..+. .+-..+.......+...-+...+.|++|++....
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~--~l~s----k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~ 348 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS--ELLS----KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLA 348 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH--HHhc----cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhh
Confidence 566899999999999999999955111 1100 0000 0112223333334444446788999999997521
Q ss_pred ch-------------hhhcCCcC--CCCCCcEEEEecCChHHhh---cc--CCce-eecCCCCHHHHHHHHHHHhCCC
Q 048597 175 NL-------------NKLGVPLQ--YLHLGSKIVFTTNSRVVCG---QM--EATM-LNASPLRDEEAWRLFEEAVGRY 231 (294)
Q Consensus 175 ~~-------------~~l~~~l~--~~~~gs~iivTtr~~~v~~---~~--~~~~-~~l~~L~~~~~~~Lf~~~~~~~ 231 (294)
.+ ..+...+. ....+..+|-+|....... .. .-.. +.+.+-+.++..+.|+.+....
T Consensus 349 ~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~ 426 (494)
T COG0464 349 SGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDK 426 (494)
T ss_pred ccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhccc
Confidence 11 11211221 1222333455554433211 11 2233 8899999999999999988643
No 351
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.45 E-value=0.0042 Score=55.49 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=35.1
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHh
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
..+||.++.+..++-.+.++ ...-+.|.|++|+|||||++.+
T Consensus 4 ~~ivgq~~~~~al~~~~~~~--~~g~vli~G~~G~gKttl~r~~ 45 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDP--KIGGVMVMGDRGTGKSTAVRAL 45 (337)
T ss_pred cccccHHHHHHHHHHHhcCC--CCCeEEEEcCCCCCHHHHHHHH
Confidence 35789999988887767665 4567889999999999999998
No 352
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.44 E-value=0.013 Score=56.49 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-..++|+|++|.|||||++.+
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll 386 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLL 386 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999999
No 353
>PRK03839 putative kinase; Provisional
Probab=96.44 E-value=0.0023 Score=51.80 Aligned_cols=19 Identities=58% Similarity=0.716 Sum_probs=17.9
Q ss_pred EEEEEcCCCChHHHHHHHh
Q 048597 103 IIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v 121 (294)
.|.|.|++|+||||+++.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~L 20 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLL 20 (180)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999998
No 354
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.44 E-value=0.011 Score=51.34 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|+.|.|||||++.+
T Consensus 29 ~Ge~~~IvG~nGsGKSTLl~~L 50 (275)
T cd03289 29 PGQRVGLLGRTGSGKSTLLSAF 50 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999999
No 355
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.43 E-value=0.0024 Score=51.61 Aligned_cols=104 Identities=20% Similarity=0.211 Sum_probs=56.7
Q ss_pred CceEEEEEcCCCChHHHHHHHhhCh--------h--H---------HHHHHHHHhCCCCC--C--cccCCh-HHHHHHHH
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANL--------K--K---------IQADIGKKIGLSTK--S--WQENSF-EDKALDIA 155 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~--------~--~---------i~~~i~~~~~~~~~--~--~~~~~~-~~~~~~l~ 155 (294)
.-.+++|+|++|+|||||.+.+... . . .+.+++..+++... . ....+. ....-.+.
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~la 99 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLA 99 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHHHH
Confidence 4479999999999999999988210 0 0 01224555554321 0 011111 12222344
Q ss_pred HHhccC--CeEEEEccccCc---cchhhhcCCcCC-CCCCcEEEEecCChHHhh
Q 048597 156 GILSRK--RFVLLLDDIWEH---INLNKLGVPLQY-LHLGSKIVFTTNSRVVCG 203 (294)
Q Consensus 156 ~~l~~k--r~LlvlDdv~~~---~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~ 203 (294)
..+-.+ .-++++|+.-.. .....+...+.. ...|..||++|.+.....
T Consensus 100 ral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 100 SELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 555566 778889987552 222222222221 124667888888876654
No 356
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.43 E-value=0.0052 Score=50.60 Aligned_cols=39 Identities=23% Similarity=0.202 Sum_probs=29.7
Q ss_pred ceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHh
Q 048597 79 TVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.++|.+..+..+.-...+. .-+.++|++|+|||+||+.+
T Consensus 4 dI~GQe~aKrAL~iAAaG~----h~lLl~GppGtGKTmlA~~l 42 (206)
T PF01078_consen 4 DIVGQEEAKRALEIAAAGG----HHLLLIGPPGTGKTMLARRL 42 (206)
T ss_dssp CSSSTHHHHHHHHHHHHCC------EEEES-CCCTHHHHHHHH
T ss_pred hhcCcHHHHHHHHHHHcCC----CCeEEECCCCCCHHHHHHHH
Confidence 5688887777776666644 78999999999999999998
No 357
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.42 E-value=0.0023 Score=49.41 Aligned_cols=18 Identities=44% Similarity=0.613 Sum_probs=17.0
Q ss_pred EEEEcCCCChHHHHHHHh
Q 048597 104 IGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 104 i~I~G~~GiGKTtLa~~v 121 (294)
|.|+|++|+|||+||+.+
T Consensus 2 vlL~G~~G~GKt~l~~~l 19 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLAREL 19 (139)
T ss_dssp EEEEESSSSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 689999999999999988
No 358
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.42 E-value=0.0025 Score=51.48 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.3
Q ss_pred eEEEEEcCCCChHHHHHHHhh
Q 048597 102 GIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~ 122 (294)
++|.+.|++|+||||+|+.+.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~ 23 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQ 23 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999883
No 359
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=96.41 E-value=0.022 Score=54.30 Aligned_cols=22 Identities=41% Similarity=0.623 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 344 ~Ge~~~l~G~NGsGKSTLl~~i 365 (530)
T PRK15064 344 AGERLAIIGENGVGKTTLLRTL 365 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3469999999999999999998
No 360
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.41 E-value=0.002 Score=47.56 Aligned_cols=19 Identities=53% Similarity=0.826 Sum_probs=16.3
Q ss_pred EEEEcCCCChHHHHHHHhh
Q 048597 104 IGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 104 i~I~G~~GiGKTtLa~~v~ 122 (294)
|-|+|++|+|||+||+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~ 19 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELA 19 (107)
T ss_pred CEEECCCCCCHHHHHHHHH
Confidence 5689999999999997753
No 361
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.41 E-value=0.0027 Score=52.53 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCChHHHHHHHhhCh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANL 124 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~ 124 (294)
...+|+|+|++|+|||||++.+...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3478999999999999999998543
No 362
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.41 E-value=0.0089 Score=50.28 Aligned_cols=22 Identities=41% Similarity=0.629 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+.++.|++|.||||..+.+
T Consensus 27 ~G~i~GllG~NGAGKTTtfRmI 48 (300)
T COG4152 27 PGEIFGLLGPNGAGKTTTFRMI 48 (300)
T ss_pred CCeEEEeecCCCCCccchHHHH
Confidence 4589999999999999999999
No 363
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.021 Score=46.13 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=19.3
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-..+-|.|+.|+|||||.+.+
T Consensus 28 Ge~~~i~G~NG~GKTtLLRil 48 (209)
T COG4133 28 GEALQITGPNGAGKTTLLRIL 48 (209)
T ss_pred CCEEEEECCCCCcHHHHHHHH
Confidence 368889999999999999999
No 364
>PRK05439 pantothenate kinase; Provisional
Probab=96.40 E-value=0.0046 Score=54.44 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.3
Q ss_pred CCCceEEEEEcCCCChHHHHHHHh
Q 048597 98 ERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 98 ~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+-+|+|.|++|+||||+|+.+
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L 106 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLL 106 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHH
Confidence 346789999999999999999887
No 365
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=96.40 E-value=0.017 Score=52.50 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||.+.+
T Consensus 44 ~Ge~~~llGpsGsGKSTLLr~I 65 (377)
T PRK11607 44 KGEIFALLGASGCGKSTLLRML 65 (377)
T ss_pred CCCEEEEECCCCCcHHHHHHHH
Confidence 3469999999999999999999
No 366
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.40 E-value=0.018 Score=56.44 Aligned_cols=21 Identities=43% Similarity=0.661 Sum_probs=19.2
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
..+|.++|+.|+||||++.++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKL 205 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKL 205 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHH
Confidence 479999999999999998887
No 367
>PRK13409 putative ATPase RIL; Provisional
Probab=96.39 E-value=0.016 Score=55.98 Aligned_cols=21 Identities=43% Similarity=0.721 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-.+++|+|++|+|||||++.+
T Consensus 365 Geiv~l~G~NGsGKSTLlk~L 385 (590)
T PRK13409 365 GEVIGIVGPNGIGKTTFAKLL 385 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 358999999999999999998
No 368
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.38 E-value=0.017 Score=48.23 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.++.|.|++|+|||||+.++
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~ 39 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQL 39 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 5689999999999999999887
No 369
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=96.38 E-value=0.012 Score=58.33 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-..++|+|++|+|||||++.+
T Consensus 504 ~Ge~vaIvG~sGsGKSTLlklL 525 (710)
T TIGR03796 504 PGQRVALVGGSGSGKSTIAKLV 525 (710)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999999
No 370
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.38 E-value=0.01 Score=58.60 Aligned_cols=22 Identities=41% Similarity=0.595 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-..++|+|++|+|||||++.+
T Consensus 482 ~G~~vaivG~sGsGKSTL~~ll 503 (694)
T TIGR01846 482 PGEFIGIVGPSGSGKSTLTKLL 503 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999999
No 371
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.37 E-value=0.003 Score=50.58 Aligned_cols=22 Identities=32% Similarity=0.276 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
+...|.|+|++|+||||+|+.+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~L 24 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLL 24 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHH
Confidence 3468999999999999999988
No 372
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.37 E-value=0.0051 Score=51.65 Aligned_cols=105 Identities=16% Similarity=0.105 Sum_probs=55.1
Q ss_pred CceEEEEEcCCCChHHHHHHHhhChhH----------------HHHHHHHHhCCCCCCc-ccCChHHHHHHHHHHh--cc
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANLKK----------------IQADIGKKIGLSTKSW-QENSFEDKALDIAGIL--SR 160 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~~~----------------i~~~i~~~~~~~~~~~-~~~~~~~~~~~l~~~l--~~ 160 (294)
...++.|.|+.|.||||+.+.+....- +...|...++....-. ..+....-...+...+ ..
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~ 109 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCT 109 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCC
Confidence 347889999999999999998843211 0111111111110000 0111222222333333 35
Q ss_pred CCeEEEEccccCcc------c-hhhhcCCcCCCCCCcEEEEecCChHHhhcc
Q 048597 161 KRFVLLLDDIWEHI------N-LNKLGVPLQYLHLGSKIVFTTNSRVVCGQM 205 (294)
Q Consensus 161 kr~LlvlDdv~~~~------~-~~~l~~~l~~~~~gs~iivTtr~~~v~~~~ 205 (294)
++-|+++|+..... . ...+...+... .++.+|++|....++...
T Consensus 110 ~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 110 SRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred CCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 78999999974321 1 11122222222 468899999998876543
No 373
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.37 E-value=0.014 Score=52.82 Aligned_cols=32 Identities=31% Similarity=0.330 Sum_probs=23.6
Q ss_pred HHHHHhcCCCCceEEEEEcCCCChHHHHHHHh
Q 048597 90 VWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 90 l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
+-+.|..+=..-.++.|.|++|+|||||+.++
T Consensus 71 LD~vLgGGi~~GslvLI~G~pG~GKStLllq~ 102 (372)
T cd01121 71 LDRVLGGGLVPGSVILIGGDPGIGKSTLLLQV 102 (372)
T ss_pred HHHhhcCCccCCeEEEEEeCCCCCHHHHHHHH
Confidence 33334333224579999999999999999987
No 374
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.36 E-value=0.0023 Score=52.17 Aligned_cols=20 Identities=45% Similarity=0.606 Sum_probs=18.3
Q ss_pred EEEEEcCCCChHHHHHHHhh
Q 048597 103 IIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v~ 122 (294)
+|+|.|.+|+||||||+.+.
T Consensus 1 ii~i~G~sgsGKTtla~~l~ 20 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQ 20 (187)
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999983
No 375
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.36 E-value=0.016 Score=53.22 Aligned_cols=22 Identities=41% Similarity=0.594 Sum_probs=19.6
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+++++|+.|+||||++..+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakL 211 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKL 211 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999866
No 376
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.35 E-value=0.0025 Score=51.75 Aligned_cols=20 Identities=40% Similarity=0.755 Sum_probs=18.3
Q ss_pred EEEEEcCCCChHHHHHHHhh
Q 048597 103 IIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v~ 122 (294)
+|+|.|.+|+||||||+.+.
T Consensus 1 ii~i~G~sgsGKttla~~l~ 20 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLS 20 (179)
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999884
No 377
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.35 E-value=0.0024 Score=51.80 Aligned_cols=19 Identities=26% Similarity=0.336 Sum_probs=17.8
Q ss_pred EEEEEcCCCChHHHHHHHh
Q 048597 103 IIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v 121 (294)
+|.|+|++|+||||+++.+
T Consensus 1 ~i~i~G~pGsGKst~a~~l 19 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKI 19 (183)
T ss_pred CEEEECCCCCCHHHHHHHH
Confidence 5889999999999999988
No 378
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.34 E-value=0.024 Score=45.31 Aligned_cols=21 Identities=48% Similarity=0.732 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-.|++|+|.+|+|||||.+.+
T Consensus 32 GeVLgiVGESGSGKtTLL~~i 52 (258)
T COG4107 32 GEVLGIVGESGSGKTTLLKCI 52 (258)
T ss_pred CcEEEEEecCCCcHHhHHHHH
Confidence 469999999999999999998
No 379
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.34 E-value=0.0053 Score=55.93 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=35.4
Q ss_pred cCceeehhHHHHHHHHHHhcC------------CCCceEEEEEcCCCChHHHHHHHh
Q 048597 77 ERTVIRQELLLDRVWRFVTDQ------------ERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...++|.++.+..+.-.+..+ +..++-|.++|++|+|||+||+.+
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraL 67 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRL 67 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHH
Confidence 356899998888887666542 123478999999999999999998
No 380
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=96.34 E-value=0.0031 Score=51.36 Aligned_cols=49 Identities=20% Similarity=0.341 Sum_probs=31.7
Q ss_pred HHHHHHHHHhccCCeEEEEccccC------ccchhhhcCCcCCCCCCcEEEEecCCh
Q 048597 149 DKALDIAGILSRKRFVLLLDDIWE------HINLNKLGVPLQYLHLGSKIVFTTNSR 199 (294)
Q Consensus 149 ~~~~~l~~~l~~kr~LlvlDdv~~------~~~~~~l~~~l~~~~~gs~iivTtr~~ 199 (294)
...-+|.+.|...+.++.||+-.. ..+...+...|.+. |--|++|-.+-
T Consensus 145 RRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~r--giGvLITDHNV 199 (243)
T COG1137 145 RRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDR--GIGVLITDHNV 199 (243)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhC--CceEEEccccH
Confidence 334456666777888999998654 23455555555444 55589998774
No 381
>PRK06217 hypothetical protein; Validated
Probab=96.33 E-value=0.0027 Score=51.64 Aligned_cols=21 Identities=38% Similarity=0.346 Sum_probs=18.7
Q ss_pred eEEEEEcCCCChHHHHHHHhh
Q 048597 102 GIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..|.|.|++|+|||||++.+.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~ 22 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALA 22 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999883
No 382
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.33 E-value=0.0061 Score=48.31 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChh
Q 048597 86 LLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLK 125 (294)
Q Consensus 86 ~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 125 (294)
.+++|..+|.. +++.++|++|+|||||++.+....
T Consensus 25 g~~~l~~~l~~-----k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 25 GIEELKELLKG-----KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp THHHHHHHHTT-----SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CHHHHHHHhcC-----CEEEEECCCCCCHHHHHHHHHhhc
Confidence 45566666653 699999999999999998886544
No 383
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.32 E-value=0.0055 Score=56.26 Aligned_cols=23 Identities=35% Similarity=0.588 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.-..++|+|++|+|||||++.+.
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~ 183 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMT 183 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhc
Confidence 34689999999999999999983
No 384
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.32 E-value=0.0027 Score=49.11 Aligned_cols=21 Identities=52% Similarity=0.741 Sum_probs=18.5
Q ss_pred EEEEEcCCCChHHHHHHHhhC
Q 048597 103 IIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v~~ 123 (294)
.|.|+|++|+|||||++.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999998854
No 385
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.32 E-value=0.0033 Score=50.67 Aligned_cols=23 Identities=39% Similarity=0.424 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...+|.+.|++|+||||+++.+.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~ 28 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALY 28 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Confidence 45799999999999999999883
No 386
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.31 E-value=0.018 Score=46.79 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...++.|.|++|+||||+++.+.
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~ 39 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALE 39 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45799999999999999999984
No 387
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.31 E-value=0.028 Score=51.67 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.+.+|.++|+.|+||||++..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKL 120 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKL 120 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4689999999999999998887
No 388
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.30 E-value=0.0027 Score=49.27 Aligned_cols=19 Identities=42% Similarity=0.616 Sum_probs=17.7
Q ss_pred EEEEEcCCCChHHHHHHHh
Q 048597 103 IIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v 121 (294)
+|.|.|++|+||||+|+.+
T Consensus 1 ~I~i~G~~GsGKst~a~~l 19 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLL 19 (147)
T ss_pred CEEEECCCCCCHHHHHHHH
Confidence 5899999999999999988
No 389
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.30 E-value=0.014 Score=45.24 Aligned_cols=108 Identities=13% Similarity=0.152 Sum_probs=54.7
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC--------hhHHHHHHHHHhCCC-CCCcccCChHHHHHHHHHHhccCCeEEEEccc
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN--------LKKIQADIGKKIGLS-TKSWQENSFEDKALDIAGILSRKRFVLLLDDI 170 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~--------~~~i~~~i~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv 170 (294)
..+-|.|.|.+|+|||||+..+.. ..++.++---.-+.. .......+.+.+...|-..+.+.-+++
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~gyDE~y~c~i~DEdkv~D~Le~~m~~Gg~IV----- 80 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGYDEEYKCHILDEDKVLDELEPLMIEGGNIV----- 80 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchhcccccccCccccHHHHHHHHHHHHhcCCcEE-----
Confidence 456789999999999999999832 222222111111111 111223466677777777765544443
Q ss_pred cCccchhhhcCCcCCCCCCcEEEEecCChHHhhccCCceeecCCCCH
Q 048597 171 WEHINLNKLGVPLQYLHLGSKIVFTTNSRVVCGQMEATMLNASPLRD 217 (294)
Q Consensus 171 ~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~l~~L~~ 217 (294)
+|... ..||..--.-.++++|-+.....+.....|.-..+.+
T Consensus 81 ----DyHgC-d~FperwfdlVvVLr~~~s~LY~RL~sRgY~e~Ki~e 122 (176)
T KOG3347|consen 81 ----DYHGC-DFFPERWFDLVVVLRTPNSVLYDRLKSRGYSEKKIKE 122 (176)
T ss_pred ----eeccc-CccchhheeEEEEEecCchHHHHHHHHcCCCHHHHhh
Confidence 33321 1233222223456666665555444433344444443
No 390
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.30 E-value=0.0032 Score=46.93 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=19.1
Q ss_pred EEEEcCCCChHHHHHHHhhChhH
Q 048597 104 IGLYGTGGVGKTTLLKQRANLKK 126 (294)
Q Consensus 104 i~I~G~~GiGKTtLa~~v~~~~~ 126 (294)
|.|+|..|+|||||++.+.+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999998865443
No 391
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=96.30 E-value=0.02 Score=52.56 Aligned_cols=22 Identities=45% Similarity=0.794 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||.+.+
T Consensus 28 ~Geiv~liGpNGaGKSTLLk~L 49 (402)
T PRK09536 28 EGSLVGLVGPNGAGKTTLLRAI 49 (402)
T ss_pred CCCEEEEECCCCchHHHHHHHH
Confidence 4479999999999999999999
No 392
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.29 E-value=0.0024 Score=50.78 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=16.5
Q ss_pred EEEEcCCCChHHHHHHHh
Q 048597 104 IGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 104 i~I~G~~GiGKTtLa~~v 121 (294)
|.|+|++|+||||+|+.+
T Consensus 1 i~l~G~~GsGKSTla~~l 18 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASAL 18 (163)
T ss_pred CEEECCCCCCHHHHHHHH
Confidence 468999999999999987
No 393
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.29 E-value=0.0029 Score=51.22 Aligned_cols=19 Identities=42% Similarity=0.543 Sum_probs=17.7
Q ss_pred EEEEEcCCCChHHHHHHHh
Q 048597 103 IIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v 121 (294)
.|.|.|++|+||||+|+.+
T Consensus 2 riiilG~pGaGK~T~A~~L 20 (178)
T COG0563 2 RILILGPPGAGKSTLAKKL 20 (178)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4789999999999999988
No 394
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.29 E-value=0.019 Score=49.93 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=21.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHh
Q 048597 99 RNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 99 ~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.+..+|.|+|.+|+|||||+..+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l 124 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTET 124 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999776
No 395
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.29 E-value=0.012 Score=57.04 Aligned_cols=22 Identities=41% Similarity=0.658 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-..++|+|++|+|||||++.+
T Consensus 366 ~Ge~iaIvG~SGsGKSTLl~lL 387 (592)
T PRK10790 366 SRGFVALVGHTGSGKSTLASLL 387 (592)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999999
No 396
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=96.29 E-value=0.014 Score=56.41 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-..++|+|++|+|||||++.+
T Consensus 360 ~G~~~~ivG~sGsGKSTL~~ll 381 (585)
T TIGR01192 360 AGQTVAIVGPTGAGKTTLINLL 381 (585)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4589999999999999999998
No 397
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.29 E-value=0.016 Score=49.01 Aligned_cols=22 Identities=41% Similarity=0.493 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-..++|+|++|+|||||++.+
T Consensus 29 ~Ge~~~i~G~nGsGKSTL~~~l 50 (235)
T COG1122 29 KGERVLLIGPNGSGKSTLLKLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3469999999999999999998
No 398
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.28 E-value=0.023 Score=48.27 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=23.4
Q ss_pred HHHhcCCCCceEEEEEcCCCChHHHHHHHh
Q 048597 92 RFVTDQERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 92 ~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
++|..+=..-+++.|.|++|+|||+|+.++
T Consensus 12 ~~l~GG~~~gs~~lI~G~pGsGKT~la~~~ 41 (237)
T TIGR03877 12 EILHGGIPERNVVLLSGGPGTGKSIFSQQF 41 (237)
T ss_pred HHhcCCCcCCeEEEEEcCCCCCHHHHHHHH
Confidence 334443335689999999999999999887
No 399
>PRK00625 shikimate kinase; Provisional
Probab=96.25 E-value=0.0032 Score=50.75 Aligned_cols=19 Identities=42% Similarity=0.328 Sum_probs=17.7
Q ss_pred EEEEEcCCCChHHHHHHHh
Q 048597 103 IIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v 121 (294)
.|.++|++|+||||+++.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~L 20 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKAL 20 (173)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4889999999999999988
No 400
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.25 E-value=0.026 Score=47.78 Aligned_cols=29 Identities=24% Similarity=0.206 Sum_probs=23.1
Q ss_pred HHhcCCCCceEEEEEcCCCChHHHHHHHh
Q 048597 93 FVTDQERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 93 ~L~~~~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.|..+=..-+++.|.|++|+|||+|+.++
T Consensus 17 ~l~gG~~~g~~~~i~G~~GsGKt~l~~~~ 45 (234)
T PRK06067 17 KLGGGIPFPSLILIEGDHGTGKSVLSQQF 45 (234)
T ss_pred hhCCCCcCCcEEEEECCCCCChHHHHHHH
Confidence 34333335689999999999999999998
No 401
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.25 E-value=0.028 Score=49.79 Aligned_cols=73 Identities=19% Similarity=0.277 Sum_probs=43.0
Q ss_pred CceEEEEEcCCCChHHHHHHHhh-------------Chh-HHHHHHHHHhCCCCCC---cccCChHHHHHHHHHHhc-cC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA-------------NLK-KIQADIGKKIGLSTKS---WQENSFEDKALDIAGILS-RK 161 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~-------------~~~-~i~~~i~~~~~~~~~~---~~~~~~~~~~~~l~~~l~-~k 161 (294)
.-+++-|.|++|+|||||+.++. +.. ......+..+++.... ....+.++....+...++ +.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~ 133 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGA 133 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccC
Confidence 55799999999999999988861 111 1222344555542211 112334444444544443 45
Q ss_pred CeEEEEccccC
Q 048597 162 RFVLLLDDIWE 172 (294)
Q Consensus 162 r~LlvlDdv~~ 172 (294)
--++|+|.+-.
T Consensus 134 ~~lIVIDSv~a 144 (321)
T TIGR02012 134 VDIIVVDSVAA 144 (321)
T ss_pred CcEEEEcchhh
Confidence 67899999853
No 402
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.022 Score=51.41 Aligned_cols=82 Identities=24% Similarity=0.295 Sum_probs=47.5
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChh---------------HHHHHHHHHhCCCCCCcc---cCChHH
Q 048597 88 DRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLK---------------KIQADIGKKIGLSTKSWQ---ENSFED 149 (294)
Q Consensus 88 ~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~---------------~i~~~i~~~~~~~~~~~~---~~~~~~ 149 (294)
.++-+.|-.+=-.-++|.|-|.+|+|||||.-++.... .-.+--+.+++++..... ..+.++
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~ 159 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLED 159 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHH
Confidence 34444444432245799999999999999998882111 112223456665443222 223333
Q ss_pred HHHHHHHHhccCCeEEEEccccC
Q 048597 150 KALDIAGILSRKRFVLLLDDIWE 172 (294)
Q Consensus 150 ~~~~l~~~l~~kr~LlvlDdv~~ 172 (294)
....+. +.+.-|+|+|.+.+
T Consensus 160 I~~~l~---~~~p~lvVIDSIQT 179 (456)
T COG1066 160 IIAELE---QEKPDLVVIDSIQT 179 (456)
T ss_pred HHHHHH---hcCCCEEEEeccce
Confidence 333333 47788999999865
No 403
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.24 E-value=0.0041 Score=51.25 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
+..+|.|+|++|+|||||++.+.
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~ 45 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALE 45 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 56899999999999999999883
No 404
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.23 E-value=0.0036 Score=51.19 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCChHHHHHHHhhChh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANLK 125 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 125 (294)
.-.+++|+|++|+|||||++.+....
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34699999999999999999886543
No 405
>PRK15453 phosphoribulokinase; Provisional
Probab=96.23 E-value=0.019 Score=49.64 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+|+|.|.+|+||||+++.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l 25 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAF 25 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 5689999999999999999977
No 406
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.23 E-value=0.013 Score=46.58 Aligned_cols=103 Identities=20% Similarity=0.217 Sum_probs=52.8
Q ss_pred eEEEEEcCCCChHHHHHHHhhChhHHH-HHHHH----HhCCCCCCc---------ccCChHHHHHHHHHHhc----cCCe
Q 048597 102 GIIGLYGTGGVGKTTLLKQRANLKKIQ-ADIGK----KIGLSTKSW---------QENSFEDKALDIAGILS----RKRF 163 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~~~~~i~-~~i~~----~~~~~~~~~---------~~~~~~~~~~~l~~~l~----~kr~ 163 (294)
+++.|+|+.|.||||+++.+.-..-.. ..+.. +.+...... .-..-......+...+. +++-
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~~~~~~~~~ 101 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALASLKPRP 101 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHHHhcCCCCCC
Confidence 699999999999999999871111000 00000 011100000 01111222233444443 2678
Q ss_pred EEEEccccCccch---hhhcCCcCC-CCCCcEEEEecCChHHhhc
Q 048597 164 VLLLDDIWEHINL---NKLGVPLQY-LHLGSKIVFTTNSRVVCGQ 204 (294)
Q Consensus 164 LlvlDdv~~~~~~---~~l~~~l~~-~~~gs~iivTtr~~~v~~~ 204 (294)
++++|+.-..-+. ..+...+.. ...|+.+|++|........
T Consensus 102 llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~ 146 (162)
T cd03227 102 LYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAEL 146 (162)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHh
Confidence 9999998763222 222222211 1126789999998887654
No 407
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=96.22 E-value=0.019 Score=55.04 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-..++|+|++|+|||||++.+
T Consensus 348 ~G~~~aivG~sGsGKSTL~~ll 369 (547)
T PRK10522 348 RGELLFLIGGNGSGKSTLAMLL 369 (547)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999998
No 408
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.22 E-value=0.021 Score=51.54 Aligned_cols=22 Identities=55% Similarity=0.693 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
+..++.++|+.|+||||++..+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akL 226 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKL 226 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 5689999999999999998887
No 409
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=96.22 E-value=0.023 Score=52.93 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-+-.+|+|++|+||||+.+.+
T Consensus 101 g~rygLiG~nG~Gkst~L~~i 121 (614)
T KOG0927|consen 101 GRRYGLIGPNGSGKSTFLRAI 121 (614)
T ss_pred CceEEEEcCCCCcHhHHHHHH
Confidence 478999999999999999999
No 410
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.21 E-value=0.0058 Score=52.80 Aligned_cols=34 Identities=29% Similarity=0.498 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHh
Q 048597 88 DRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 88 ~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.+++..+.....+..+|+|.|.+|+|||||.-.+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L 71 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEAL 71 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHH
Confidence 4667777766678899999999999999998776
No 411
>PRK08149 ATP synthase SpaL; Validated
Probab=96.21 E-value=0.012 Score=54.13 Aligned_cols=23 Identities=26% Similarity=0.535 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.-..++|+|++|+|||||++.+.
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~ 172 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLI 172 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHh
Confidence 34689999999999999999883
No 412
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.20 E-value=0.0037 Score=52.26 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCChHHHHHHHhhCh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANL 124 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~ 124 (294)
.-.+++|+|++|+|||||++.+...
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3479999999999999999998443
No 413
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.20 E-value=0.014 Score=56.21 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-..++|+|++|+|||||++.+
T Consensus 340 ~G~~~~ivG~sGsGKSTLl~ll 361 (569)
T PRK10789 340 PGQMLGICGPTGSGKSTLLSLI 361 (569)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999998
No 414
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.20 E-value=0.011 Score=46.74 Aligned_cols=41 Identities=15% Similarity=0.130 Sum_probs=26.4
Q ss_pred cCCeEEEEccccCc-----cchhhhcCCcCCCCCCcEEEEecCChH
Q 048597 160 RKRFVLLLDDIWEH-----INLNKLGVPLQYLHLGSKIVFTTNSRV 200 (294)
Q Consensus 160 ~kr~LlvlDdv~~~-----~~~~~l~~~l~~~~~gs~iivTtr~~~ 200 (294)
+.-=|+|||++-.. -+.+.+...+.....+..+|+|.|+..
T Consensus 94 ~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 94 GEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred CCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 34459999998653 233444444444444678999999854
No 415
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.20 E-value=0.0038 Score=51.92 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
.-.+++|+|++|+|||||++.+..
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G 49 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNG 49 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 347999999999999999999843
No 416
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.20 E-value=0.0048 Score=49.72 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...+|.|+|++|+||||+++.+.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la 25 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALA 25 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45699999999999999999873
No 417
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.19 E-value=0.0068 Score=53.93 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHh
Q 048597 88 DRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 88 ~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
..+++.+........+|+|.|++|+|||||+..+
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l 76 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEAL 76 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHH
Confidence 3455555443446789999999999999999886
No 418
>PLN03073 ABC transporter F family; Provisional
Probab=96.19 E-value=0.03 Score=55.26 Aligned_cols=110 Identities=18% Similarity=0.205 Sum_probs=0.0
Q ss_pred EEEEEcCCCChHHHHHHHh---------------------------------------------hChhHHHHHHHHHhCC
Q 048597 103 IIGLYGTGGVGKTTLLKQR---------------------------------------------ANLKKIQADIGKKIGL 137 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v---------------------------------------------~~~~~i~~~i~~~~~~ 137 (294)
+++|+|++|+|||||++.+ ....+-...++..+++
T Consensus 537 ~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl 616 (718)
T PLN03073 537 RIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 616 (718)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCC
Q ss_pred CC-----CCcccCChHHHHHHHHHHhccCCeEEEEccccC---ccchhhhcCCcCCCCCCcEEEEecCChHHhhccCCce
Q 048597 138 ST-----KSWQENSFEDKALDIAGILSRKRFVLLLDDIWE---HINLNKLGVPLQYLHLGSKIVFTTNSRVVCGQMEATM 209 (294)
Q Consensus 138 ~~-----~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~---~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~ 209 (294)
.. ....-+.-+...-.|...+-.+.-+++||+--+ ...-..+...+... .| .||++|.+...........
T Consensus 617 ~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~g-tvIivSHd~~~i~~~~drv 694 (718)
T PLN03073 617 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF-QG-GVLMVSHDEHLISGSVDEL 694 (718)
T ss_pred ChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-CC-EEEEEECCHHHHHHhCCEE
Q ss_pred eecCC
Q 048597 210 LNASP 214 (294)
Q Consensus 210 ~~l~~ 214 (294)
+.+..
T Consensus 695 ~~l~~ 699 (718)
T PLN03073 695 WVVSE 699 (718)
T ss_pred EEEEC
No 419
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=96.19 E-value=0.012 Score=56.70 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
+-..++|+|++|.|||||++.+
T Consensus 365 ~Ge~i~IvG~sGsGKSTLlklL 386 (576)
T TIGR02204 365 PGETVALVGPSGAGKSTLFQLL 386 (576)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999998
No 420
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.17 E-value=0.032 Score=49.50 Aligned_cols=73 Identities=21% Similarity=0.275 Sum_probs=43.0
Q ss_pred CceEEEEEcCCCChHHHHHHHhh-------------Ch-hHHHHHHHHHhCCCCCC---cccCChHHHHHHHHHHhc-cC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA-------------NL-KKIQADIGKKIGLSTKS---WQENSFEDKALDIAGILS-RK 161 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~-------------~~-~~i~~~i~~~~~~~~~~---~~~~~~~~~~~~l~~~l~-~k 161 (294)
.-+++-|+|++|+|||||+.++. +. ..+....+..++..... ....+.++....+...++ +.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~ 133 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGA 133 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccC
Confidence 45799999999999999999871 10 11222344455432111 112334455555544443 45
Q ss_pred CeEEEEccccC
Q 048597 162 RFVLLLDDIWE 172 (294)
Q Consensus 162 r~LlvlDdv~~ 172 (294)
--++|+|.+-.
T Consensus 134 ~~lIVIDSvaa 144 (325)
T cd00983 134 VDLIVVDSVAA 144 (325)
T ss_pred CCEEEEcchHh
Confidence 67899998753
No 421
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.17 E-value=0.004 Score=52.00 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
.-.+++|+|++|+|||||++.+..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G 51 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILG 51 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 347999999999999999999843
No 422
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.16 E-value=0.0054 Score=40.24 Aligned_cols=20 Identities=35% Similarity=0.526 Sum_probs=17.8
Q ss_pred eEEEEEcCCCChHHHHHHHh
Q 048597 102 GIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v 121 (294)
.+..|.|+.|+|||||.-.+
T Consensus 24 ~~tli~G~nGsGKSTllDAi 43 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAI 43 (62)
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37999999999999998766
No 423
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.16 E-value=0.028 Score=45.06 Aligned_cols=46 Identities=15% Similarity=0.163 Sum_probs=28.2
Q ss_pred HHHhcc-CCeEEEEccccCc-----cchhhhcCCcCCCCCCcEEEEecCChH
Q 048597 155 AGILSR-KRFVLLLDDIWEH-----INLNKLGVPLQYLHLGSKIVFTTNSRV 200 (294)
Q Consensus 155 ~~~l~~-kr~LlvlDdv~~~-----~~~~~l~~~l~~~~~gs~iivTtr~~~ 200 (294)
++.+.. .-=++|||++-.. -+.+.+...+.....+..+|+|.|+..
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 344433 4459999998642 233344444444445678999999863
No 424
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.15 E-value=0.018 Score=55.04 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-..++|+|++|+|||||++.+
T Consensus 343 ~G~~~~ivG~sGsGKSTL~~ll 364 (544)
T TIGR01842 343 AGEALAIIGPSGSGKSTLARLI 364 (544)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999999
No 425
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.14 E-value=0.0057 Score=50.82 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
++++|+++|+.|+|||||...+..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999988743
No 426
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.14 E-value=0.0045 Score=48.05 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=18.8
Q ss_pred eEEEEEcCCCChHHHHHHHhhC
Q 048597 102 GIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
++|.|+|+.|+|||||++.+.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999987744
No 427
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.13 E-value=0.0055 Score=51.30 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=19.6
Q ss_pred eEEEEEcCCCChHHHHHHHhh
Q 048597 102 GIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.++.|.|++|.||||+.+.+.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~ 51 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVA 51 (216)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 799999999999999999983
No 428
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.02 Score=49.61 Aligned_cols=84 Identities=23% Similarity=0.239 Sum_probs=53.1
Q ss_pred eeehhHHHHHHHHHHh----------cCCCCceEEEEEcCCCChHHHHHHHhhChhH-----HH--HHHHHHhCCCCCCc
Q 048597 80 VIRQELLLDRVWRFVT----------DQERNRGIIGLYGTGGVGKTTLLKQRANLKK-----IQ--ADIGKKIGLSTKSW 142 (294)
Q Consensus 80 ~vGr~~~~~~l~~~L~----------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-----i~--~~i~~~~~~~~~~~ 142 (294)
+-|.+...+.|.+.+. ......+-|.++||+|.|||.||+.|..... +. .-+...++
T Consensus 135 VAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmG------ 208 (439)
T KOG0739|consen 135 VAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMG------ 208 (439)
T ss_pred hccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhc------
Confidence 5577777776666542 1223578999999999999999999943322 11 11111221
Q ss_pred ccCChHHHHHHHHHHh-ccCCeEEEEccccC
Q 048597 143 QENSFEDKALDIAGIL-SRKRFVLLLDDIWE 172 (294)
Q Consensus 143 ~~~~~~~~~~~l~~~l-~~kr~LlvlDdv~~ 172 (294)
..+.+...|++.- ..|.-+|++|++..
T Consensus 209 ---ESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 209 ---ESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred ---cHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 1234555555554 47889999999874
No 429
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.13 E-value=0.0072 Score=52.42 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=24.2
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHh
Q 048597 87 LDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 87 ~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+++.+... -+-+.++|+.|+|||++++..
T Consensus 22 ~~~ll~~l~~~---~~pvLl~G~~GtGKT~li~~~ 53 (272)
T PF12775_consen 22 YSYLLDLLLSN---GRPVLLVGPSGTGKTSLIQNF 53 (272)
T ss_dssp HHHHHHHHHHC---TEEEEEESSTTSSHHHHHHHH
T ss_pred HHHHHHHHHHc---CCcEEEECCCCCchhHHHHhh
Confidence 34556655554 367799999999999999775
No 430
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.13 E-value=0.0043 Score=51.56 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.-.+++|+|++|+|||||++.+.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~ 47 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMIL 47 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 34799999999999999999984
No 431
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.12 E-value=0.0041 Score=55.52 Aligned_cols=21 Identities=43% Similarity=0.651 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-.++++.||+|+|||||.+.|
T Consensus 31 Gef~~lLGPSGcGKTTlLR~I 51 (352)
T COG3842 31 GEFVTLLGPSGCGKTTLLRMI 51 (352)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 379999999999999999999
No 432
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.11 E-value=0.0071 Score=51.15 Aligned_cols=22 Identities=41% Similarity=0.499 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.++.++|++|+||||+.++|
T Consensus 26 ~gef~vliGpSGsGKTTtLkMI 47 (309)
T COG1125 26 EGEFLVLIGPSGSGKTTTLKMI 47 (309)
T ss_pred CCeEEEEECCCCCcHHHHHHHH
Confidence 4478999999999999999999
No 433
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.11 E-value=0.0047 Score=51.48 Aligned_cols=24 Identities=42% Similarity=0.804 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCChHHHHHHHhhCh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANL 124 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~ 124 (294)
. .+++|+|++|+|||||++.+...
T Consensus 23 ~-e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 23 E-EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred c-eeEEEECCCCCCHHHHHHHHhCC
Confidence 6 89999999999999999998543
No 434
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.11 E-value=0.028 Score=45.84 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=19.0
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-..|.+.|++|+|||||.+.+
T Consensus 31 ge~vv~lGpSGcGKTTLLnl~ 51 (259)
T COG4525 31 GELVVVLGPSGCGKTTLLNLI 51 (259)
T ss_pred CCEEEEEcCCCccHHHHHHHH
Confidence 368889999999999999988
No 435
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=96.11 E-value=0.018 Score=56.78 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-..++|+|++|+|||||++.+
T Consensus 478 ~Ge~vaIvG~sGsGKSTLlklL 499 (686)
T TIGR03797 478 PGEFVAIVGPSGSGKSTLLRLL 499 (686)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999998
No 436
>PRK14974 cell division protein FtsY; Provisional
Probab=96.11 E-value=0.054 Score=48.36 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.1
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
++.+|.++|++|+||||++..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakL 160 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKL 160 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 4689999999999999976666
No 437
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.10 E-value=0.0077 Score=53.81 Aligned_cols=40 Identities=28% Similarity=0.357 Sum_probs=34.9
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHh
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
..++|.++.+..+...+..+ ..+.+.|++|+|||+||+.+
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~l 63 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARAL 63 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHH
Confidence 34899988888888888876 78999999999999999887
No 438
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.10 E-value=0.0044 Score=52.49 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l 46 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLI 46 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999999
No 439
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.10 E-value=0.0042 Score=48.64 Aligned_cols=18 Identities=44% Similarity=0.451 Sum_probs=17.1
Q ss_pred EEEEcCCCChHHHHHHHh
Q 048597 104 IGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 104 i~I~G~~GiGKTtLa~~v 121 (294)
|.|+|++|+||||+|+.+
T Consensus 2 i~l~G~~GsGKstla~~l 19 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLL 19 (154)
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 789999999999999998
No 440
>PRK14530 adenylate kinase; Provisional
Probab=96.10 E-value=0.0044 Score=51.77 Aligned_cols=20 Identities=35% Similarity=0.302 Sum_probs=18.5
Q ss_pred eEEEEEcCCCChHHHHHHHh
Q 048597 102 GIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v 121 (294)
+.|.|+|++|+||||+++.+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~L 23 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNL 23 (215)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999988
No 441
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=96.09 E-value=0.0079 Score=55.53 Aligned_cols=22 Identities=41% Similarity=0.653 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-+..+++|..|+|||||.+++
T Consensus 105 ~GrRYGLvGrNG~GKsTLLRai 126 (582)
T KOG0062|consen 105 RGRRYGLVGRNGIGKSTLLRAI 126 (582)
T ss_pred cccccceeCCCCCcHHHHHHHH
Confidence 3478899999999999999999
No 442
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=96.09 E-value=0.018 Score=54.13 Aligned_cols=123 Identities=22% Similarity=0.294 Sum_probs=0.0
Q ss_pred EEEEEcCCCChHHHHHHHh-------------------------------------------------------------
Q 048597 103 IIGLYGTGGVGKTTLLKQR------------------------------------------------------------- 121 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v------------------------------------------------------------- 121 (294)
+++|+|.+|+||||++..+
T Consensus 37 ~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E 116 (539)
T COG1123 37 ILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIRE 116 (539)
T ss_pred EEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHH
Q ss_pred ----------hChhHHHHHHHHHhCCCCCCcc------cCChHHHHHHHHHHhccCCeEEEEc------cccCccchhhh
Q 048597 122 ----------ANLKKIQADIGKKIGLSTKSWQ------ENSFEDKALDIAGILSRKRFVLLLD------DIWEHINLNKL 179 (294)
Q Consensus 122 ----------~~~~~i~~~i~~~~~~~~~~~~------~~~~~~~~~~l~~~l~~kr~LlvlD------dv~~~~~~~~l 179 (294)
-...+-..+++..++++..... -+.-....-.+.-.|..+.-||+.| |+-...+.-++
T Consensus 117 ~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~l 196 (539)
T COG1123 117 ALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDL 196 (539)
T ss_pred HHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHH
Q ss_pred cCCcCCCCCCcEEEEecCChHHhhccCCce---eecCCCCHHHHHHHHHH
Q 048597 180 GVPLQYLHLGSKIVFTTNSRVVCGQMEATM---LNASPLRDEEAWRLFEE 226 (294)
Q Consensus 180 ~~~l~~~~~gs~iivTtr~~~v~~~~~~~~---~~l~~L~~~~~~~Lf~~ 226 (294)
...+. ...|..+|++|.+-.|...+.... |.=+-.....+.++|.+
T Consensus 197 lk~l~-~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~ 245 (539)
T COG1123 197 LKDLQ-RELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSN 245 (539)
T ss_pred HHHHH-HHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhc
No 443
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.08 E-value=0.0044 Score=49.72 Aligned_cols=18 Identities=61% Similarity=0.746 Sum_probs=15.9
Q ss_pred EEEEcCCCChHHHHHHHh
Q 048597 104 IGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 104 i~I~G~~GiGKTtLa~~v 121 (294)
|.|.|++|+|||||++.+
T Consensus 2 i~iTG~pG~GKTTll~k~ 19 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKV 19 (168)
T ss_dssp EEEES-TTSSHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHH
Confidence 789999999999999887
No 444
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.08 E-value=0.0046 Score=51.49 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
.-.+++|+|++|+|||||++.+..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G 47 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILG 47 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcC
Confidence 347999999999999999999844
No 445
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.07 E-value=0.0047 Score=51.46 Aligned_cols=24 Identities=42% Similarity=0.472 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
.-.+++|+|++|+|||||++.+..
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~G 50 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYG 50 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 347999999999999999999843
No 446
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.07 E-value=0.01 Score=47.35 Aligned_cols=19 Identities=47% Similarity=0.580 Sum_probs=18.3
Q ss_pred EEEEEcCCCChHHHHHHHh
Q 048597 103 IIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v 121 (294)
+|.|.|+.|+||||+|+.+
T Consensus 2 iI~i~G~~GSGKstia~~l 20 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKIL 20 (171)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7999999999999999998
No 447
>PRK09354 recA recombinase A; Provisional
Probab=96.07 E-value=0.034 Score=49.78 Aligned_cols=73 Identities=19% Similarity=0.258 Sum_probs=43.9
Q ss_pred CceEEEEEcCCCChHHHHHHHhh-------------C-hhHHHHHHHHHhCCCCCC---cccCChHHHHHHHHHHhc-cC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA-------------N-LKKIQADIGKKIGLSTKS---WQENSFEDKALDIAGILS-RK 161 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~-------------~-~~~i~~~i~~~~~~~~~~---~~~~~~~~~~~~l~~~l~-~k 161 (294)
.-+++-|+|++|+|||||+.++. + ...+....+..+++.... ....+.++....+...++ +.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~ 138 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGA 138 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCC
Confidence 55799999999999999999871 1 111223445555543211 112334445444544443 45
Q ss_pred CeEEEEccccC
Q 048597 162 RFVLLLDDIWE 172 (294)
Q Consensus 162 r~LlvlDdv~~ 172 (294)
--+||+|.+-.
T Consensus 139 ~~lIVIDSvaa 149 (349)
T PRK09354 139 VDLIVVDSVAA 149 (349)
T ss_pred CCEEEEeChhh
Confidence 67899999853
No 448
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.06 E-value=0.015 Score=48.46 Aligned_cols=20 Identities=50% Similarity=0.870 Sum_probs=18.8
Q ss_pred eEEEEEcCCCChHHHHHHHh
Q 048597 102 GIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v 121 (294)
..++|.|++|+|||+|+..+
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i 35 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEI 35 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHH
Confidence 68899999999999999988
No 449
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.06 E-value=0.005 Score=49.81 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=19.6
Q ss_pred eEEEEEcCCCChHHHHHHHhhC
Q 048597 102 GIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
.++.|+|++|+|||||++.+..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~ 25 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAA 25 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998843
No 450
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.06 E-value=0.0047 Score=52.53 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l 48 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCI 48 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999998
No 451
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.05 E-value=0.0049 Score=51.65 Aligned_cols=22 Identities=41% Similarity=0.637 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCChHHHHHHHhh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
-.+++|+|++|+|||||++.+.
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~ 51 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIA 51 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4699999999999999999983
No 452
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.04 E-value=0.016 Score=48.95 Aligned_cols=20 Identities=40% Similarity=0.468 Sum_probs=18.3
Q ss_pred eEEEEEcCCCChHHHHHHHh
Q 048597 102 GIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v 121 (294)
..|.|.|++|+||||+|+.+
T Consensus 7 mrIvl~G~PGsGK~T~a~~L 26 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEIL 26 (229)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 34899999999999999998
No 453
>PRK13949 shikimate kinase; Provisional
Probab=96.04 E-value=0.0048 Score=49.57 Aligned_cols=19 Identities=53% Similarity=0.394 Sum_probs=17.8
Q ss_pred EEEEEcCCCChHHHHHHHh
Q 048597 103 IIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v 121 (294)
-|.|+|++|+||||+++.+
T Consensus 3 ~I~liG~~GsGKstl~~~L 21 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKAL 21 (169)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999987
No 454
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.04 E-value=0.008 Score=52.96 Aligned_cols=34 Identities=29% Similarity=0.427 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHh
Q 048597 88 DRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 88 ~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
..+++.+........+|+|+|++|+|||||+..+
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l 54 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEAL 54 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHH
Confidence 3444445444447899999999999999999887
No 455
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.03 E-value=0.0051 Score=50.92 Aligned_cols=25 Identities=52% Similarity=0.611 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCChHHHHHHHhhCh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANL 124 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~ 124 (294)
.-.+++|+|++|+|||||++.+...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3479999999999999999998543
No 456
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.03 E-value=0.0054 Score=49.38 Aligned_cols=21 Identities=38% Similarity=0.412 Sum_probs=19.2
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
...|.|+|+.|+|||||++.+
T Consensus 4 ~~~I~liG~~GaGKStl~~~L 24 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQL 24 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHH
Confidence 357999999999999999998
No 457
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=96.02 E-value=0.02 Score=45.32 Aligned_cols=37 Identities=43% Similarity=0.628 Sum_probs=26.7
Q ss_pred ceEEEEEcCCCChHHHHHHHh---------hChhHHHHHHHHHhCC
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR---------ANLKKIQADIGKKIGL 137 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v---------~~~~~i~~~i~~~~~~ 137 (294)
..++.|+|-+|+||||+.+.+ .|.-.+.-+++..-++
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~gl 49 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGL 49 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCC
Confidence 579999999999999998877 2333455555555544
No 458
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.02 E-value=0.0082 Score=53.54 Aligned_cols=42 Identities=21% Similarity=0.329 Sum_probs=33.7
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHh
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
+.++|.+..+..+.-.+... +..-+.+.|+.|+||||+|+.+
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~--~~~~vLl~G~pG~gKT~lar~l 49 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDP--GIGGVLVFGDRGTGKSTAVRAL 49 (334)
T ss_pred HHhCCHHHHHHHHHHHHhcc--CCCcEEEEcCCCCCHHHHHHHH
Confidence 45789999888777555433 3456999999999999999998
No 459
>PRK14527 adenylate kinase; Provisional
Probab=96.01 E-value=0.0058 Score=50.03 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+|.|+|++|+||||+|+.+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~L 26 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERL 26 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999987
No 460
>PRK04182 cytidylate kinase; Provisional
Probab=96.01 E-value=0.011 Score=47.49 Aligned_cols=19 Identities=42% Similarity=0.576 Sum_probs=18.3
Q ss_pred EEEEEcCCCChHHHHHHHh
Q 048597 103 IIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v 121 (294)
+|.|.|+.|+||||+++.+
T Consensus 2 ~I~i~G~~GsGKstia~~l 20 (180)
T PRK04182 2 IITISGPPGSGKTTVARLL 20 (180)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7999999999999999999
No 461
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.01 E-value=0.0083 Score=53.74 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=36.9
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhC
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
+.+||.++.+..|+..+.++ ...-|.|.|+.|+||||+|+.+++
T Consensus 17 ~~ivGq~~~k~al~~~~~~p--~~~~vli~G~~GtGKs~~ar~~~~ 60 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDP--KIGGVMIMGDRGTGKSTTIRALVD 60 (350)
T ss_pred HHHhChHHHHHHHHHhccCC--CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 45799999888888777776 667788999999999999999843
No 462
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=96.01 E-value=0.024 Score=49.10 Aligned_cols=91 Identities=16% Similarity=0.226 Sum_probs=57.1
Q ss_pred CceeehhHHHHHHHHHHhc-----CCCCceEEEEEcCCCChHHHHHHHhhChh-------HHHHHHHHHhCCCCCCcccC
Q 048597 78 RTVIRQELLLDRVWRFVTD-----QERNRGIIGLYGTGGVGKTTLLKQRANLK-------KIQADIGKKIGLSTKSWQEN 145 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~-----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~-------~i~~~i~~~~~~~~~~~~~~ 145 (294)
..++|..-..+.++..+.+ .+.++-+++.+|.+|+||...++.+.+.. .....|......+.. .
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~----~ 157 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA----S 157 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh----H
Confidence 4577877677777777654 24577899999999999999998883221 122233333333322 2
Q ss_pred ChHH----HHHHHHHHh-ccCCeEEEEccccC
Q 048597 146 SFED----KALDIAGIL-SRKRFVLLLDDIWE 172 (294)
Q Consensus 146 ~~~~----~~~~l~~~l-~~kr~LlvlDdv~~ 172 (294)
..+. +...++..+ .-+|-|+|+|++..
T Consensus 158 ~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DK 189 (344)
T KOG2170|consen 158 KIEDYKEELKNRVRGTVQACQRSLFIFDEVDK 189 (344)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceEEechhhh
Confidence 2333 333333333 34789999999987
No 463
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.00 E-value=0.0052 Score=52.19 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l 47 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCL 47 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999998
No 464
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.00 E-value=0.0057 Score=51.04 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i 33 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLL 33 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999999
No 465
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.00 E-value=0.0053 Score=51.09 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
.-.+++|+|++|+|||||++.+..
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G 49 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYK 49 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 347999999999999999999843
No 466
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.00 E-value=0.0053 Score=51.41 Aligned_cols=23 Identities=43% Similarity=0.650 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.-.+++|+|++|+|||||++.+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~ 47 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLT 47 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34799999999999999999983
No 467
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.99 E-value=0.0087 Score=56.98 Aligned_cols=44 Identities=25% Similarity=0.285 Sum_probs=36.1
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhC
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
..++|.+..+..+...+... ...-+.|+|++|+||||+|+.+++
T Consensus 65 ~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHH
Confidence 35899999998888777554 445678999999999999998854
No 468
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.99 E-value=0.041 Score=49.80 Aligned_cols=68 Identities=26% Similarity=0.291 Sum_probs=39.9
Q ss_pred CceEEEEEcCCCChHHH-HHHHh-------------------hCh--hHHHHHHHHHhCCCCCCcccCChHHHHHHHHHH
Q 048597 100 NRGIIGLYGTGGVGKTT-LLKQR-------------------ANL--KKIQADIGKKIGLSTKSWQENSFEDKALDIAGI 157 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTt-La~~v-------------------~~~--~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (294)
+.++|.++||.|+|||| ||+.. |.+ .+-++..+.-++++.. -..+..++...+...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~--vv~~~~el~~ai~~l 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE--VVYSPKELAEAIEAL 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE--EecCHHHHHHHHHHh
Confidence 37999999999999995 55554 211 1234445555555433 234555565555543
Q ss_pred hccCCeEEEEcccc
Q 048597 158 LSRKRFVLLLDDIW 171 (294)
Q Consensus 158 l~~kr~LlvlDdv~ 171 (294)
+++ =+|.+|-+.
T Consensus 280 -~~~-d~ILVDTaG 291 (407)
T COG1419 280 -RDC-DVILVDTAG 291 (407)
T ss_pred -hcC-CEEEEeCCC
Confidence 344 456667664
No 469
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.44 Score=40.68 Aligned_cols=181 Identities=13% Similarity=0.088 Sum_probs=89.5
Q ss_pred CceeehhHHHHHHHHHHhcC-----------CCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccC-
Q 048597 78 RTVIRQELLLDRVWRFVTDQ-----------ERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQEN- 145 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~- 145 (294)
+.+-|.+..++++++.+.-+ =..+.-+..+||+|.|||-+|+....-.. ..|+.-.+ .+.-.+
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~--aTFLKLAg---PQLVQMf 245 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN--ATFLKLAG---PQLVQMF 245 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc--chHHHhcc---hHHHhhh
Confidence 34667888888988887432 13567899999999999999988732111 11222111 110011
Q ss_pred --ChHHHHHHHHHHh-ccCCeEEEEccccCc----c------c------hhhhcCCcCC--CCCCcEEEEecCChHHhh-
Q 048597 146 --SFEDKALDIAGIL-SRKRFVLLLDDIWEH----I------N------LNKLGVPLQY--LHLGSKIVFTTNSRVVCG- 203 (294)
Q Consensus 146 --~~~~~~~~l~~~l-~~kr~LlvlDdv~~~----~------~------~~~l~~~l~~--~~~gs~iivTtr~~~v~~- 203 (294)
+-..+...-+..- .....+|++|++... . + .-.+...+.. .....+||..|..-++..
T Consensus 246 IGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDP 325 (424)
T KOG0652|consen 246 IGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDP 325 (424)
T ss_pred hcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCH
Confidence 1112222222222 356789999987531 0 0 1111111111 112346777765544421
Q ss_pred ----ccCCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHHHH
Q 048597 204 ----QMEATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVGRA 263 (294)
Q Consensus 204 ----~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~~ 263 (294)
...-.. ++...-+++.-..+++-+...-....+-.++++++.--..-|.--.|+-+=|++
T Consensus 326 ALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGM 390 (424)
T KOG0652|consen 326 ALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGM 390 (424)
T ss_pred HHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhH
Confidence 111222 666555555555566555544443445566666654333222222334444444
No 470
>PRK13947 shikimate kinase; Provisional
Probab=95.99 E-value=0.0051 Score=49.25 Aligned_cols=19 Identities=47% Similarity=0.415 Sum_probs=17.7
Q ss_pred EEEEEcCCCChHHHHHHHh
Q 048597 103 IIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v 121 (294)
-|.|+|++|+||||+++.+
T Consensus 3 ~I~l~G~~GsGKst~a~~L 21 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRV 21 (171)
T ss_pred eEEEEcCCCCCHHHHHHHH
Confidence 4899999999999999998
No 471
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=95.99 E-value=0.036 Score=46.26 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=18.3
Q ss_pred EEEEEcCCCChHHHHHHHh
Q 048597 103 IIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v 121 (294)
+|+|+|+.|+||||+|+.+
T Consensus 2 iI~i~G~~gsGKstva~~~ 20 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFI 20 (227)
T ss_pred EEEEeCCCCCCHHHHHHHH
Confidence 7999999999999999998
No 472
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.98 E-value=0.0054 Score=51.59 Aligned_cols=25 Identities=40% Similarity=0.595 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCChHHHHHHHhhCh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANL 124 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~ 124 (294)
.-.+++|+|++|+|||||++.+...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3479999999999999999888654
No 473
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.98 E-value=0.0056 Score=50.30 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCChHHHHHHHhhCh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANL 124 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~ 124 (294)
.-.+++|+|++|+|||||++.+...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3469999999999999999998443
No 474
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.97 E-value=0.026 Score=49.09 Aligned_cols=22 Identities=41% Similarity=0.682 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+.+|+|.+|.|||||.+.+
T Consensus 31 ~GeI~GIIG~SGAGKSTLiR~i 52 (339)
T COG1135 31 KGEIFGIIGYSGAGKSTLLRLI 52 (339)
T ss_pred CCcEEEEEcCCCCcHHHHHHHH
Confidence 3479999999999999999999
No 475
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.97 E-value=0.025 Score=48.88 Aligned_cols=95 Identities=18% Similarity=0.176 Sum_probs=51.5
Q ss_pred eehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChh-HHHHHHH-----HHhCCCC-C--CcccCChHHHH
Q 048597 81 IRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLK-KIQADIG-----KKIGLST-K--SWQENSFEDKA 151 (294)
Q Consensus 81 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~-~i~~~i~-----~~~~~~~-~--~~~~~~~~~~~ 151 (294)
.|......+.+..+... ....|.|.|+.|+||||+++.+.... .-...+. ..+.... . ...........
T Consensus 62 lg~~~~~~~~l~~~~~~--~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~ 139 (264)
T cd01129 62 LGLKPENLEIFRKLLEK--PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFA 139 (264)
T ss_pred cCCCHHHHHHHHHHHhc--CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHH
Confidence 34444333333333333 34689999999999999998762111 0000000 0000000 0 00011112356
Q ss_pred HHHHHHhccCCeEEEEccccCccchh
Q 048597 152 LDIAGILSRKRFVLLLDDIWEHINLN 177 (294)
Q Consensus 152 ~~l~~~l~~kr~LlvlDdv~~~~~~~ 177 (294)
..+...|+...=.|+++++.+.+...
T Consensus 140 ~~l~~~lR~~PD~i~vgEiR~~e~a~ 165 (264)
T cd01129 140 RGLRAILRQDPDIIMVGEIRDAETAE 165 (264)
T ss_pred HHHHHHhccCCCEEEeccCCCHHHHH
Confidence 67788888888899999998876544
No 476
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.96 E-value=0.0055 Score=52.03 Aligned_cols=22 Identities=41% Similarity=0.662 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l 48 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLI 48 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999999
No 477
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.96 E-value=0.0058 Score=51.18 Aligned_cols=23 Identities=48% Similarity=0.683 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.-.+++|+|++|+|||||++.+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~ 47 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIM 47 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHh
Confidence 34799999999999999999983
No 478
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.95 E-value=0.0057 Score=51.22 Aligned_cols=24 Identities=33% Similarity=0.583 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
.-.+++|+|++|+|||||++.+..
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G 53 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGG 53 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 347999999999999999999843
No 479
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.95 E-value=0.011 Score=56.56 Aligned_cols=45 Identities=16% Similarity=0.153 Sum_probs=34.5
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhh
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
+..+.|.+..+.|.++......+..+|.|+|++|+||||+++.+.
T Consensus 369 P~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La 413 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALM 413 (568)
T ss_pred ChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHH
Confidence 445667777776666655555566799999999999999999983
No 480
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.94 E-value=0.0057 Score=51.41 Aligned_cols=25 Identities=36% Similarity=0.575 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCChHHHHHHHhhCh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANL 124 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~ 124 (294)
.-.+++|+|++|+|||||++.+...
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3479999999999999999998443
No 481
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.93 E-value=0.0059 Score=51.62 Aligned_cols=22 Identities=36% Similarity=0.678 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l 51 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCI 51 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999998
No 482
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.93 E-value=0.0059 Score=51.44 Aligned_cols=25 Identities=44% Similarity=0.565 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCChHHHHHHHhhCh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANL 124 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~ 124 (294)
.-.+++|+|++|+|||||++.+...
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3479999999999999999999443
No 483
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.93 E-value=0.02 Score=50.86 Aligned_cols=22 Identities=36% Similarity=0.619 Sum_probs=19.7
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-..++|+|++|+|||||++.+
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~I 89 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMI 89 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHH
Confidence 3468899999999999999988
No 484
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.92 E-value=0.0061 Score=50.35 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=19.8
Q ss_pred eEEEEEcCCCChHHHHHHHhh
Q 048597 102 GIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.+++|+|++|.|||||++.+.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~ 46 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIG 46 (199)
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 799999999999999999984
No 485
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.92 E-value=0.006 Score=51.70 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l 47 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLL 47 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999999
No 486
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.91 E-value=0.015 Score=47.27 Aligned_cols=23 Identities=48% Similarity=0.569 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCChHHHHHHHhhC
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
.+.|.|+||+|+|||||++.+..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~ 24 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQ 24 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999988843
No 487
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.91 E-value=0.033 Score=46.50 Aligned_cols=30 Identities=27% Similarity=0.223 Sum_probs=23.1
Q ss_pred HHHHHhcCCCCceEEEEEcCCCChHHHHHHHh
Q 048597 90 VWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 90 l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
++..|-.. ...-..|.|++|+|||||.+.+
T Consensus 128 li~~ly~~--g~lntLiigpP~~GKTTlLRdi 157 (308)
T COG3854 128 LIKDLYQN--GWLNTLIIGPPQVGKTTLLRDI 157 (308)
T ss_pred HHHHHHhc--CceeeEEecCCCCChHHHHHHH
Confidence 55555544 4555789999999999999887
No 488
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.91 E-value=0.011 Score=53.24 Aligned_cols=97 Identities=16% Similarity=0.172 Sum_probs=55.2
Q ss_pred ceEEEEEcCCCChHHHHHHHhhChh------HHH--H---HHHHHh--C-CCCCCcccCChHHHHHHHHHHhccCCeEEE
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRANLK------KIQ--A---DIGKKI--G-LSTKSWQENSFEDKALDIAGILSRKRFVLL 166 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~~~~------~i~--~---~i~~~~--~-~~~~~~~~~~~~~~~~~l~~~l~~kr~Llv 166 (294)
...|.|.|+.|+||||+++.+.... .+. . ++...- . ..... ...+.......++..|+...=.|+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~e-vg~~~~~~~~~l~~~lr~~pd~i~ 200 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQRE-VGLDTLSFANALRAALREDPDVIL 200 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccc-cCCCCcCHHHHHHHhhccCCCEEE
Confidence 4789999999999999998863210 000 0 000000 0 00000 011223456667888888999999
Q ss_pred EccccCccchhhhcCCcCCCCCCcEEEEecCChHH
Q 048597 167 LDDIWEHINLNKLGVPLQYLHLGSKIVFTTNSRVV 201 (294)
Q Consensus 167 lDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v 201 (294)
+|++.+.+.+...... ...|..++.|....++
T Consensus 201 vgEird~~~~~~~l~a---a~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 201 IGEMRDLETVELALTA---AETGHLVFGTLHTNSA 232 (343)
T ss_pred EeCCCCHHHHHHHHHH---HHcCCcEEEEEcCCCH
Confidence 9999877666543222 2335556666665444
No 489
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.90 E-value=0.0062 Score=50.36 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCChHHHHHHHhhC
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
-.+++|+|++|+|||||++.+..
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G 46 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGL 46 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999844
No 490
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.90 E-value=0.0062 Score=50.67 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.-.+++|.|++|+|||||++.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~ 47 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIA 47 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 34689999999999999999983
No 491
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.89 E-value=0.0045 Score=46.88 Aligned_cols=18 Identities=56% Similarity=0.619 Sum_probs=13.8
Q ss_pred EEEEcCCCChHHHHHHHh
Q 048597 104 IGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 104 i~I~G~~GiGKTtLa~~v 121 (294)
|.|+|.+|+||||+|+.+
T Consensus 2 vLleg~PG~GKT~la~~l 19 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKAL 19 (131)
T ss_dssp EEEES---HHHHHHHHHH
T ss_pred EeeECCCccHHHHHHHHH
Confidence 679999999999999887
No 492
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.89 E-value=0.0062 Score=52.34 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l 47 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLI 47 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999998
No 493
>PRK04328 hypothetical protein; Provisional
Probab=95.88 E-value=0.042 Score=47.02 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-+++.|.|++|+|||+|+.++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~f 43 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQF 43 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHH
Confidence 4689999999999999999887
No 494
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.88 E-value=0.0064 Score=51.44 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
.-.+++|+|++|+|||||++.+..
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~G 57 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGG 57 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 346999999999999999999944
No 495
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.88 E-value=0.014 Score=48.01 Aligned_cols=33 Identities=33% Similarity=0.377 Sum_probs=24.2
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHh
Q 048597 87 LDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 87 ~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
..+.+..+... .-+++.|.|++|+||||+++.+
T Consensus 6 Q~~a~~~~l~~--~~~~~~l~G~aGtGKT~~l~~~ 38 (196)
T PF13604_consen 6 QREAVRAILTS--GDRVSVLQGPAGTGKTTLLKAL 38 (196)
T ss_dssp HHHHHHHHHHC--TCSEEEEEESTTSTHHHHHHHH
T ss_pred HHHHHHHHHhc--CCeEEEEEECCCCCHHHHHHHH
Confidence 34444445433 3478899999999999999887
No 496
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.88 E-value=0.013 Score=54.10 Aligned_cols=21 Identities=43% Similarity=0.669 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-..++|+|++|+|||||++.+
T Consensus 165 Gqri~I~G~SGsGKTTLL~~I 185 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAML 185 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999988
No 497
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.88 E-value=0.0065 Score=51.14 Aligned_cols=24 Identities=38% Similarity=0.437 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
.-.+++|+|++|+|||||++.+..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G 55 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVAS 55 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 347999999999999999999844
No 498
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.87 E-value=0.026 Score=53.09 Aligned_cols=22 Identities=41% Similarity=0.665 Sum_probs=19.8
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+|+|+|++|+||||++..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakL 370 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKL 370 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999998877
No 499
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.87 E-value=0.0064 Score=51.46 Aligned_cols=23 Identities=43% Similarity=0.602 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.-.+++|+|++|+|||||++.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~ 47 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLIS 47 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHc
Confidence 34699999999999999999993
No 500
>PF13245 AAA_19: Part of AAA domain
Probab=95.87 E-value=0.008 Score=41.36 Aligned_cols=18 Identities=39% Similarity=0.519 Sum_probs=14.9
Q ss_pred ceEEEEEcCCCChHHHHH
Q 048597 101 RGIIGLYGTGGVGKTTLL 118 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa 118 (294)
.+++.|.|++|.|||+++
T Consensus 10 ~~~~vv~g~pGtGKT~~~ 27 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTL 27 (76)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 367888999999999554
Done!