Query 048597
Match_columns 294
No_of_seqs 236 out of 2321
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 19:15:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048597.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048597hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.5E-31 8.4E-36 251.2 20.4 182 78-267 128-343 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 2.3E-27 8E-32 242.6 21.0 196 76-284 122-349 (1249)
3 1z6t_A APAF-1, apoptotic prote 99.9 5.3E-26 1.8E-30 216.6 15.5 196 76-284 122-349 (591)
4 1vt4_I APAF-1 related killer D 99.9 4.7E-26 1.6E-30 222.2 12.5 178 80-275 130-349 (1221)
5 2qen_A Walker-type ATPase; unk 99.6 9.7E-15 3.3E-19 129.3 16.5 181 76-264 10-249 (350)
6 2fna_A Conserved hypothetical 99.6 1E-14 3.5E-19 129.5 13.6 179 76-266 11-255 (357)
7 1w5s_A Origin recognition comp 99.5 2.8E-13 9.6E-18 122.8 14.4 183 77-262 21-267 (412)
8 1njg_A DNA polymerase III subu 99.5 1.5E-12 5.3E-17 108.7 14.8 183 78-264 23-231 (250)
9 2qby_B CDC6 homolog 3, cell di 99.4 1.3E-11 4.4E-16 110.8 18.8 198 78-281 20-271 (384)
10 2chg_A Replication factor C sm 99.4 1.6E-12 5.5E-17 107.2 11.7 178 78-262 17-205 (226)
11 2v1u_A Cell division control p 99.4 1.6E-11 5.4E-16 110.1 19.1 201 77-281 18-277 (387)
12 2qby_A CDC6 homolog 1, cell di 99.4 1E-11 3.4E-16 111.2 16.3 202 77-280 19-272 (386)
13 1sxj_B Activator 1 37 kDa subu 99.3 1.8E-11 6.2E-16 107.1 12.6 177 78-261 21-210 (323)
14 1fnn_A CDC6P, cell division co 99.3 1E-10 3.4E-15 105.0 16.5 182 78-261 17-247 (389)
15 1iqp_A RFCS; clamp loader, ext 99.2 1.2E-10 4.1E-15 102.0 10.1 178 78-264 25-215 (327)
16 2chq_A Replication factor C sm 99.0 1.7E-09 5.7E-14 94.3 12.1 179 78-261 17-204 (319)
17 1jr3_A DNA polymerase III subu 99.0 7.8E-09 2.7E-13 92.1 13.5 177 78-261 16-221 (373)
18 1sxj_D Activator 1 41 kDa subu 98.9 1.2E-08 4.3E-13 90.1 11.6 175 78-261 37-235 (353)
19 1hqc_A RUVB; extended AAA-ATPa 98.9 3E-08 1E-12 86.7 13.2 187 78-280 12-238 (324)
20 3te6_A Regulatory protein SIR3 98.8 2.5E-08 8.6E-13 86.9 11.6 148 79-228 21-211 (318)
21 3h4m_A Proteasome-activating n 98.8 7.5E-08 2.6E-12 82.7 14.4 197 78-283 17-261 (285)
22 1d2n_A N-ethylmaleimide-sensit 98.8 4.8E-08 1.7E-12 83.4 11.9 198 78-289 33-270 (272)
23 1sxj_E Activator 1 40 kDa subu 98.8 3.9E-08 1.3E-12 87.1 10.7 179 78-261 14-237 (354)
24 3bos_A Putative DNA replicatio 98.7 6.7E-09 2.3E-13 86.5 5.0 170 79-261 29-217 (242)
25 3pfi_A Holliday junction ATP-d 98.7 9.1E-08 3.1E-12 84.2 12.3 168 78-261 29-227 (338)
26 1jbk_A CLPB protein; beta barr 98.7 2.9E-09 1E-13 85.3 2.0 44 78-123 22-65 (195)
27 2z4s_A Chromosomal replication 98.7 1.5E-07 5.2E-12 86.1 13.5 187 80-281 107-333 (440)
28 3qfl_A MLA10; coiled-coil, (CC 98.7 7.3E-09 2.5E-13 76.7 3.9 41 2-42 44-84 (115)
29 3pvs_A Replication-associated 98.7 9.4E-08 3.2E-12 87.5 10.1 172 78-261 26-215 (447)
30 1sxj_C Activator 1 40 kDa subu 98.6 2.9E-07 9.8E-12 81.2 12.9 175 78-259 25-210 (340)
31 3uk6_A RUVB-like 2; hexameric 98.6 5.4E-07 1.9E-11 80.1 14.3 44 78-121 44-90 (368)
32 1sxj_A Activator 1 95 kDa subu 98.6 1.7E-07 5.9E-12 87.4 10.8 172 78-261 39-253 (516)
33 2qz4_A Paraplegin; AAA+, SPG7, 98.6 7.3E-07 2.5E-11 75.3 13.8 177 78-261 6-222 (262)
34 3eie_A Vacuolar protein sortin 98.6 1.1E-06 3.8E-11 76.9 14.9 171 78-261 18-228 (322)
35 3d8b_A Fidgetin-like protein 1 98.6 6.6E-07 2.3E-11 79.5 13.2 177 78-262 84-296 (357)
36 1xwi_A SKD1 protein; VPS4B, AA 98.6 7.6E-07 2.6E-11 78.0 13.2 174 78-261 12-223 (322)
37 2qp9_X Vacuolar protein sortin 98.6 2.8E-06 9.5E-11 75.4 16.8 170 78-260 51-260 (355)
38 3syl_A Protein CBBX; photosynt 98.6 9.7E-08 3.3E-12 82.9 6.9 151 79-230 32-219 (309)
39 3u61_B DNA polymerase accessor 98.5 2.7E-07 9.3E-12 80.7 9.3 171 78-261 26-216 (324)
40 3cf0_A Transitional endoplasmi 98.5 5.7E-06 2E-10 71.6 17.2 164 78-256 15-223 (301)
41 1l8q_A Chromosomal replication 98.5 1.6E-06 5.6E-11 75.8 13.4 153 87-256 23-203 (324)
42 3vfd_A Spastin; ATPase, microt 98.5 3.9E-06 1.3E-10 75.3 15.2 177 78-262 115-327 (389)
43 3hu3_A Transitional endoplasmi 98.4 5.9E-06 2E-10 76.4 15.0 172 78-260 204-414 (489)
44 2zan_A Vacuolar protein sortin 98.4 1.8E-06 6.1E-11 79.0 11.0 175 78-261 134-345 (444)
45 1a5t_A Delta prime, HOLB; zinc 98.4 9.4E-06 3.2E-10 71.3 15.2 167 84-260 8-204 (334)
46 3b9p_A CG5977-PA, isoform A; A 98.4 1.4E-05 4.9E-10 68.7 15.5 175 78-261 21-233 (297)
47 4b4t_J 26S protease regulatory 98.3 7.2E-06 2.5E-10 73.4 13.0 196 78-282 148-391 (405)
48 1in4_A RUVB, holliday junction 98.3 1.3E-05 4.6E-10 70.4 13.3 190 78-281 25-251 (334)
49 4b4t_H 26S protease regulatory 98.3 3.9E-05 1.3E-09 69.7 16.5 196 79-283 210-453 (467)
50 3pxg_A Negative regulator of g 98.2 9.7E-06 3.3E-10 74.6 12.4 145 78-229 180-339 (468)
51 2r62_A Cell division protease 98.2 1.3E-06 4.4E-11 74.2 5.3 169 78-255 11-219 (268)
52 4b4t_L 26S protease subunit RP 98.2 2.2E-05 7.4E-10 71.3 13.5 198 78-284 181-426 (437)
53 3n70_A Transport activator; si 98.2 3.2E-07 1.1E-11 70.7 0.7 45 79-123 2-46 (145)
54 1ofh_A ATP-dependent HSL prote 98.2 2.7E-06 9.2E-11 73.5 6.7 47 77-123 14-72 (310)
55 4b4t_M 26S protease regulatory 98.1 1.2E-05 4E-10 72.9 10.4 199 78-285 181-427 (434)
56 3ec2_A DNA replication protein 98.1 4.7E-06 1.6E-10 66.3 6.9 41 83-123 19-60 (180)
57 2ce7_A Cell division protein F 98.1 3.7E-05 1.3E-09 70.6 13.7 195 78-281 16-257 (476)
58 3pxi_A Negative regulator of g 98.1 3.4E-05 1.2E-09 75.2 14.2 146 78-229 180-339 (758)
59 1r6b_X CLPA protein; AAA+, N-t 98.1 3.7E-05 1.3E-09 74.9 14.4 147 78-228 186-362 (758)
60 4b4t_I 26S protease regulatory 98.1 2.1E-05 7.1E-10 70.8 11.5 195 79-282 183-425 (437)
61 2bjv_A PSP operon transcriptio 98.1 3.1E-06 1.1E-10 71.8 5.1 44 79-122 7-50 (265)
62 4fcw_A Chaperone protein CLPB; 98.1 1.3E-05 4.6E-10 69.3 9.2 45 78-122 17-68 (311)
63 3co5_A Putative two-component 98.1 1.3E-06 4.6E-11 67.0 2.3 107 79-197 5-114 (143)
64 1ojl_A Transcriptional regulat 98.1 3.3E-06 1.1E-10 73.3 4.9 45 78-122 2-46 (304)
65 1qvr_A CLPB protein; coiled co 98.0 1.3E-05 4.4E-10 79.3 9.5 145 78-227 170-344 (854)
66 1lv7_A FTSH; alpha/beta domain 98.0 8.5E-05 2.9E-09 62.5 12.9 195 78-281 12-253 (257)
67 2dhr_A FTSH; AAA+ protein, hex 98.0 7.5E-05 2.6E-09 69.0 12.7 168 78-254 31-236 (499)
68 2p65_A Hypothetical protein PF 98.0 5.4E-06 1.8E-10 65.7 4.3 44 78-123 22-65 (187)
69 4b4t_K 26S protease regulatory 98.0 8.9E-05 3E-09 67.1 12.5 168 78-254 172-379 (428)
70 1ixz_A ATP-dependent metallopr 97.9 3.9E-05 1.3E-09 64.5 9.0 168 78-254 16-221 (254)
71 2c9o_A RUVB-like 1; hexameric 97.9 0.0001 3.5E-09 67.5 11.8 93 163-261 297-410 (456)
72 3pxi_A Negative regulator of g 97.8 1.1E-05 3.7E-10 78.7 5.0 147 78-228 491-675 (758)
73 2gno_A DNA polymerase III, gam 97.8 0.00018 6.3E-09 62.2 11.5 142 82-228 1-152 (305)
74 2x8a_A Nuclear valosin-contain 97.8 0.00018 6.3E-09 61.3 11.2 147 78-229 10-192 (274)
75 1iy2_A ATP-dependent metallopr 97.8 6.7E-05 2.3E-09 64.0 8.2 168 78-254 40-245 (278)
76 2w58_A DNAI, primosome compone 97.7 0.0001 3.5E-09 59.5 8.4 38 85-122 36-75 (202)
77 3cf2_A TER ATPase, transitiona 97.7 0.00023 7.9E-09 69.2 11.8 168 79-255 205-408 (806)
78 1um8_A ATP-dependent CLP prote 97.6 7.6E-05 2.6E-09 66.5 6.3 45 78-122 21-93 (376)
79 3m6a_A ATP-dependent protease 97.6 0.00019 6.5E-09 67.2 9.1 45 78-122 81-129 (543)
80 1ypw_A Transitional endoplasmi 97.6 0.00049 1.7E-08 67.5 11.9 168 78-254 204-407 (806)
81 1r6b_X CLPA protein; AAA+, N-t 97.5 6.4E-05 2.2E-09 73.3 4.6 46 78-123 458-510 (758)
82 3lw7_A Adenylate kinase relate 97.4 0.00082 2.8E-08 52.3 9.0 20 102-121 2-21 (179)
83 3c8u_A Fructokinase; YP_612366 97.3 0.00016 5.4E-09 58.8 4.5 39 86-124 7-45 (208)
84 1qvr_A CLPB protein; coiled co 97.3 0.00039 1.3E-08 68.7 7.8 44 79-122 559-609 (854)
85 2w0m_A SSO2452; RECA, SSPF, un 97.3 0.00055 1.9E-08 56.1 7.6 21 101-121 23-43 (235)
86 3t15_A Ribulose bisphosphate c 97.3 7.3E-05 2.5E-09 64.4 2.2 24 100-123 35-58 (293)
87 2cbz_A Multidrug resistance-as 97.3 0.0014 4.9E-08 54.4 9.6 22 100-121 30-51 (237)
88 2vhj_A Ntpase P4, P4; non- hyd 97.2 0.00031 1.1E-08 60.9 5.3 66 101-172 123-193 (331)
89 1rz3_A Hypothetical protein rb 97.2 0.00047 1.6E-08 55.7 5.5 41 83-123 3-44 (201)
90 2b8t_A Thymidine kinase; deoxy 97.2 0.00014 4.9E-09 59.9 2.4 96 100-198 11-125 (223)
91 3tui_C Methionine import ATP-b 97.1 0.00069 2.4E-08 59.9 6.5 22 100-121 53-74 (366)
92 2r44_A Uncharacterized protein 97.0 0.00043 1.5E-08 60.4 4.0 41 78-122 27-67 (331)
93 1odf_A YGR205W, hypothetical 3 97.0 0.00079 2.7E-08 57.8 5.5 25 98-122 28-52 (290)
94 3e70_C DPA, signal recognition 97.0 0.003 1E-07 55.1 9.2 22 100-121 128-149 (328)
95 2eyu_A Twitching motility prot 97.0 0.00018 6.2E-09 60.8 1.2 99 100-201 24-135 (261)
96 1kgd_A CASK, peripheral plasma 96.9 0.00041 1.4E-08 55.0 3.0 22 101-122 5-26 (180)
97 1zp6_A Hypothetical protein AT 96.9 0.00048 1.6E-08 54.9 3.3 24 100-123 8-31 (191)
98 3nbx_X ATPase RAVA; AAA+ ATPas 96.9 0.00074 2.5E-08 62.4 4.9 42 78-123 22-63 (500)
99 1z47_A CYSA, putative ABC-tran 96.9 0.0015 5E-08 57.7 6.6 21 101-121 41-61 (355)
100 3nh6_A ATP-binding cassette SU 96.9 0.00095 3.2E-08 57.7 5.3 22 100-121 79-100 (306)
101 3rlf_A Maltose/maltodextrin im 96.9 0.001 3.5E-08 59.2 5.5 22 100-121 28-49 (381)
102 3hws_A ATP-dependent CLP prote 96.9 0.00076 2.6E-08 59.7 4.7 45 78-122 15-72 (363)
103 3a00_A Guanylate kinase, GMP k 96.9 0.00045 1.5E-08 55.1 2.6 21 102-122 2-22 (186)
104 2it1_A 362AA long hypothetical 96.9 0.0019 6.6E-08 57.1 6.9 22 100-121 28-49 (362)
105 3tr0_A Guanylate kinase, GMP k 96.9 0.00052 1.8E-08 55.3 3.0 23 101-123 7-29 (205)
106 3d31_A Sulfate/molybdate ABC t 96.8 0.0021 7.1E-08 56.6 7.0 22 100-121 25-46 (348)
107 3jvv_A Twitching mobility prot 96.8 0.002 6.9E-08 56.9 6.9 99 101-202 123-234 (356)
108 1ye8_A Protein THEP1, hypothet 96.8 0.0006 2.1E-08 54.1 3.0 23 103-125 2-24 (178)
109 1kag_A SKI, shikimate kinase I 96.8 0.00056 1.9E-08 53.5 2.5 20 102-121 5-24 (173)
110 4gp7_A Metallophosphoesterase; 96.8 0.00069 2.4E-08 53.2 3.1 21 100-120 8-28 (171)
111 3kb2_A SPBC2 prophage-derived 96.8 0.00067 2.3E-08 52.9 3.0 20 102-121 2-21 (173)
112 1lvg_A Guanylate kinase, GMP k 96.8 0.00058 2E-08 55.1 2.6 23 101-123 4-26 (198)
113 3uie_A Adenylyl-sulfate kinase 96.8 0.0008 2.8E-08 54.2 3.4 24 100-123 24-47 (200)
114 3asz_A Uridine kinase; cytidin 96.8 0.00075 2.6E-08 54.7 3.2 24 100-123 5-28 (211)
115 1qhx_A CPT, protein (chloramph 96.8 0.00075 2.6E-08 53.0 3.1 20 102-121 4-23 (178)
116 1znw_A Guanylate kinase, GMP k 96.7 0.00071 2.4E-08 54.9 3.0 25 100-124 19-43 (207)
117 3tau_A Guanylate kinase, GMP k 96.7 0.00086 2.9E-08 54.5 3.3 23 100-122 7-29 (208)
118 2bdt_A BH3686; alpha-beta prot 96.7 0.00085 2.9E-08 53.4 3.2 21 102-122 3-23 (189)
119 1knq_A Gluconate kinase; ALFA/ 96.7 0.0011 3.7E-08 52.0 3.7 22 100-121 7-28 (175)
120 4eun_A Thermoresistant glucoki 96.7 0.00086 3E-08 54.0 3.1 22 100-121 28-49 (200)
121 3tqc_A Pantothenate kinase; bi 96.7 0.0016 5.4E-08 56.7 4.9 41 81-121 70-112 (321)
122 1ly1_A Polynucleotide kinase; 96.7 0.00091 3.1E-08 52.5 3.2 22 102-123 3-24 (181)
123 3vaa_A Shikimate kinase, SK; s 96.7 0.0009 3.1E-08 53.9 3.1 22 100-121 24-45 (199)
124 2j41_A Guanylate kinase; GMP, 96.7 0.001 3.5E-08 53.5 3.3 22 101-122 6-27 (207)
125 1htw_A HI0065; nucleotide-bind 96.6 0.0011 3.7E-08 51.6 3.2 24 100-123 32-55 (158)
126 1z6g_A Guanylate kinase; struc 96.6 0.00085 2.9E-08 55.0 2.6 23 101-123 23-45 (218)
127 3tlx_A Adenylate kinase 2; str 96.6 0.0023 7.9E-08 53.3 5.0 38 84-121 12-49 (243)
128 3tif_A Uncharacterized ABC tra 96.6 0.0011 3.8E-08 55.0 3.0 22 100-121 30-51 (235)
129 1vma_A Cell division protein F 96.6 0.011 3.6E-07 51.1 9.3 38 84-121 81-124 (306)
130 3t61_A Gluconokinase; PSI-biol 96.6 0.00096 3.3E-08 53.7 2.5 21 101-121 18-38 (202)
131 3aez_A Pantothenate kinase; tr 96.6 0.0013 4.3E-08 57.1 3.4 23 99-121 88-110 (312)
132 1s96_A Guanylate kinase, GMP k 96.6 0.0011 3.9E-08 54.3 3.0 23 100-122 15-37 (219)
133 2bbw_A Adenylate kinase 4, AK4 96.5 0.0012 4.2E-08 55.0 3.1 22 101-122 27-48 (246)
134 1j8m_F SRP54, signal recogniti 96.5 0.0096 3.3E-07 51.1 8.9 21 101-121 98-118 (297)
135 2jeo_A Uridine-cytidine kinase 96.5 0.0014 4.7E-08 54.7 3.5 24 100-123 24-47 (245)
136 2onk_A Molybdate/tungstate ABC 96.5 0.0013 4.4E-08 54.8 3.2 21 100-121 24-44 (240)
137 3trf_A Shikimate kinase, SK; a 96.5 0.0013 4.3E-08 52.1 3.0 21 101-121 5-25 (185)
138 2qor_A Guanylate kinase; phosp 96.5 0.0011 3.9E-08 53.5 2.7 23 100-122 11-33 (204)
139 1gvn_B Zeta; postsegregational 96.5 0.0026 9E-08 54.4 5.1 22 100-121 32-53 (287)
140 3b85_A Phosphate starvation-in 96.5 0.0016 5.4E-08 53.0 3.5 23 102-124 23-45 (208)
141 2pcj_A ABC transporter, lipopr 96.5 0.0012 4.2E-08 54.3 2.9 21 101-121 30-50 (224)
142 2rhm_A Putative kinase; P-loop 96.5 0.0015 5.2E-08 51.9 3.3 22 100-121 4-25 (193)
143 1cke_A CK, MSSA, protein (cyti 96.5 0.0013 4.5E-08 53.8 3.0 20 102-121 6-25 (227)
144 3ney_A 55 kDa erythrocyte memb 96.5 0.0015 5.2E-08 52.6 3.2 23 100-122 18-40 (197)
145 2qt1_A Nicotinamide riboside k 96.5 0.0017 5.7E-08 52.5 3.4 24 100-123 20-43 (207)
146 1jjv_A Dephospho-COA kinase; P 96.4 0.0016 5.4E-08 52.6 3.1 20 102-121 3-22 (206)
147 1nks_A Adenylate kinase; therm 96.4 0.0015 5.3E-08 51.7 3.0 20 102-121 2-21 (194)
148 1g8p_A Magnesium-chelatase 38 96.4 0.0012 4.1E-08 57.8 2.5 44 78-123 24-67 (350)
149 1ex7_A Guanylate kinase; subst 96.4 0.0014 4.7E-08 52.4 2.6 20 102-121 2-21 (186)
150 3gfo_A Cobalt import ATP-bindi 96.4 0.0015 5.2E-08 55.5 3.0 21 101-121 34-54 (275)
151 3hr8_A Protein RECA; alpha and 96.4 0.0045 1.6E-07 54.5 6.1 73 100-172 60-150 (356)
152 2if2_A Dephospho-COA kinase; a 96.4 0.0015 5.3E-08 52.5 2.9 20 102-121 2-21 (204)
153 1uf9_A TT1252 protein; P-loop, 96.4 0.0018 6.3E-08 51.8 3.3 22 100-121 7-28 (203)
154 1b0u_A Histidine permease; ABC 96.4 0.0016 5.3E-08 55.1 3.0 22 100-121 31-52 (262)
155 1kht_A Adenylate kinase; phosp 96.4 0.0016 5.6E-08 51.5 3.0 21 102-122 4-24 (192)
156 2ehv_A Hypothetical protein PH 96.4 0.0016 5.4E-08 54.0 3.0 22 100-121 29-50 (251)
157 1rj9_A FTSY, signal recognitio 96.4 0.0018 6.3E-08 55.9 3.4 22 100-121 101-122 (304)
158 3iij_A Coilin-interacting nucl 96.4 0.0016 5.3E-08 51.4 2.7 22 100-121 10-31 (180)
159 2kjq_A DNAA-related protein; s 96.4 0.0011 3.7E-08 50.9 1.7 26 100-125 35-60 (149)
160 1g6h_A High-affinity branched- 96.4 0.0017 5.7E-08 54.7 3.0 21 101-121 33-53 (257)
161 4g1u_C Hemin import ATP-bindin 96.4 0.0017 5.8E-08 55.0 3.0 22 100-121 36-57 (266)
162 2wsm_A Hydrogenase expression/ 96.4 0.0031 1.1E-07 51.3 4.4 38 83-122 14-51 (221)
163 3lnc_A Guanylate kinase, GMP k 96.4 0.0011 3.9E-08 54.5 1.8 22 101-122 27-48 (231)
164 1ji0_A ABC transporter; ATP bi 96.4 0.0018 6.1E-08 53.9 3.0 21 101-121 32-52 (240)
165 4a74_A DNA repair and recombin 96.3 0.0018 6.3E-08 52.9 3.1 22 100-121 24-45 (231)
166 2hf9_A Probable hydrogenase ni 96.3 0.0042 1.4E-07 50.7 5.2 22 100-121 37-58 (226)
167 2jaq_A Deoxyguanosine kinase; 96.3 0.0019 6.4E-08 51.8 3.0 20 103-122 2-21 (205)
168 2olj_A Amino acid ABC transpor 96.3 0.0018 6.3E-08 54.6 3.0 22 100-121 49-70 (263)
169 2ze6_A Isopentenyl transferase 96.3 0.002 6.8E-08 54.1 3.1 20 102-121 2-21 (253)
170 2i3b_A HCR-ntpase, human cance 96.3 0.0017 5.7E-08 52.1 2.5 25 102-126 2-26 (189)
171 1tev_A UMP-CMP kinase; ploop, 96.3 0.0021 7.2E-08 51.0 3.2 21 101-121 3-23 (196)
172 2pze_A Cystic fibrosis transme 96.3 0.0019 6.6E-08 53.3 3.0 21 101-121 34-54 (229)
173 1sgw_A Putative ABC transporte 96.3 0.0017 5.7E-08 53.1 2.5 21 101-121 35-55 (214)
174 1via_A Shikimate kinase; struc 96.3 0.0017 5.9E-08 50.9 2.5 20 102-121 5-24 (175)
175 2ga8_A Hypothetical 39.9 kDa p 96.3 0.0048 1.6E-07 54.2 5.6 44 81-124 2-47 (359)
176 1ukz_A Uridylate kinase; trans 96.3 0.0025 8.7E-08 51.2 3.6 22 100-121 14-35 (203)
177 3k1j_A LON protease, ATP-depen 96.3 0.0029 1E-07 59.9 4.5 40 78-121 41-80 (604)
178 2d2e_A SUFC protein; ABC-ATPas 96.3 0.002 6.9E-08 54.0 3.0 23 101-123 29-51 (250)
179 1mv5_A LMRA, multidrug resista 96.3 0.0021 7.2E-08 53.6 3.1 22 100-121 27-48 (243)
180 2ff7_A Alpha-hemolysin translo 96.3 0.002 6.9E-08 53.9 3.0 21 101-121 35-55 (247)
181 1y63_A LMAJ004144AAA protein; 96.3 0.0023 7.9E-08 50.8 3.2 23 100-122 9-31 (184)
182 1jr3_D DNA polymerase III, del 96.3 0.019 6.6E-07 50.0 9.5 162 90-259 9-183 (343)
183 4e22_A Cytidylate kinase; P-lo 96.3 0.0023 7.8E-08 53.6 3.3 23 100-122 26-48 (252)
184 1vpl_A ABC transporter, ATP-bi 96.3 0.0021 7.1E-08 54.1 3.0 22 100-121 40-61 (256)
185 2c95_A Adenylate kinase 1; tra 96.3 0.0023 8E-08 50.9 3.2 22 100-121 8-29 (196)
186 3cm0_A Adenylate kinase; ATP-b 96.3 0.0024 8.3E-08 50.4 3.2 21 101-121 4-24 (186)
187 2p5t_B PEZT; postsegregational 96.3 0.0035 1.2E-07 52.4 4.3 36 86-121 14-52 (253)
188 2iyv_A Shikimate kinase, SK; t 96.2 0.0018 6.3E-08 51.1 2.4 20 102-121 3-22 (184)
189 1xjc_A MOBB protein homolog; s 96.2 0.0024 8.3E-08 50.1 3.0 23 100-122 3-25 (169)
190 2qi9_C Vitamin B12 import ATP- 96.2 0.0022 7.6E-08 53.7 3.0 21 101-121 26-46 (249)
191 2zu0_C Probable ATP-dependent 96.2 0.0022 7.5E-08 54.3 3.0 23 100-122 45-67 (267)
192 2ghi_A Transport protein; mult 96.2 0.0023 7.7E-08 54.0 3.0 22 100-121 45-66 (260)
193 2ixe_A Antigen peptide transpo 96.2 0.0023 7.8E-08 54.3 3.0 22 100-121 44-65 (271)
194 1sq5_A Pantothenate kinase; P- 96.2 0.0025 8.6E-08 55.1 3.3 24 100-123 79-102 (308)
195 3b9q_A Chloroplast SRP recepto 96.2 0.0026 9E-08 54.8 3.4 22 100-121 99-120 (302)
196 2ihy_A ABC transporter, ATP-bi 96.2 0.0023 8E-08 54.5 3.0 22 100-121 46-67 (279)
197 2f1r_A Molybdopterin-guanine d 96.2 0.0015 5.2E-08 51.4 1.7 22 102-123 3-24 (171)
198 2yz2_A Putative ABC transporte 96.2 0.0024 8.2E-08 54.0 3.0 22 100-121 32-53 (266)
199 2nq2_C Hypothetical ABC transp 96.2 0.0024 8.3E-08 53.6 2.9 21 101-121 31-51 (253)
200 3kl4_A SRP54, signal recogniti 96.2 0.023 7.9E-07 51.4 9.5 22 100-121 96-117 (433)
201 1e6c_A Shikimate kinase; phosp 96.2 0.0023 7.8E-08 49.9 2.6 20 102-121 3-22 (173)
202 2plr_A DTMP kinase, probable t 96.2 0.0029 9.9E-08 50.9 3.3 21 101-121 4-24 (213)
203 2cdn_A Adenylate kinase; phosp 96.2 0.0032 1.1E-07 50.6 3.5 22 100-121 19-40 (201)
204 2bwj_A Adenylate kinase 5; pho 96.2 0.0026 8.9E-08 50.7 2.9 21 101-121 12-32 (199)
205 2yvu_A Probable adenylyl-sulfa 96.2 0.0032 1.1E-07 49.9 3.4 23 100-122 12-34 (186)
206 3b5x_A Lipid A export ATP-bind 96.2 0.011 3.9E-07 55.6 7.7 22 100-121 368-389 (582)
207 1zuh_A Shikimate kinase; alpha 96.1 0.0028 9.7E-08 49.2 3.0 22 100-121 6-27 (168)
208 3p32_A Probable GTPase RV1496/ 96.1 0.0064 2.2E-07 53.6 5.6 35 87-121 65-99 (355)
209 3a4m_A L-seryl-tRNA(SEC) kinas 96.1 0.003 1E-07 53.1 3.3 22 101-122 4-25 (260)
210 2qgz_A Helicase loader, putati 96.1 0.0058 2E-07 52.8 5.2 41 83-123 133-174 (308)
211 4a82_A Cystic fibrosis transme 96.1 0.0053 1.8E-07 57.9 5.3 22 100-121 366-387 (578)
212 1qf9_A UMP/CMP kinase, protein 96.1 0.0031 1.1E-07 49.9 3.1 22 100-121 5-26 (194)
213 1tq4_A IIGP1, interferon-induc 96.1 0.0032 1.1E-07 56.7 3.5 24 100-123 68-91 (413)
214 2vli_A Antibiotic resistance p 96.1 0.002 6.9E-08 50.7 1.9 21 101-121 5-25 (183)
215 1uj2_A Uridine-cytidine kinase 96.1 0.0034 1.2E-07 52.5 3.3 22 100-121 21-42 (252)
216 1g41_A Heat shock protein HSLU 96.1 0.0048 1.6E-07 55.9 4.5 44 78-121 15-70 (444)
217 2pt5_A Shikimate kinase, SK; a 96.1 0.0032 1.1E-07 48.8 3.0 19 103-121 2-20 (168)
218 1aky_A Adenylate kinase; ATP:A 96.1 0.0033 1.1E-07 51.3 3.1 22 100-121 3-24 (220)
219 3qf4_A ABC transporter, ATP-bi 96.1 0.019 6.5E-07 54.1 8.8 22 100-121 368-389 (587)
220 3umf_A Adenylate kinase; rossm 96.1 0.0037 1.3E-07 51.2 3.4 22 100-121 28-49 (217)
221 2pbr_A DTMP kinase, thymidylat 96.1 0.0032 1.1E-07 49.9 3.0 19 103-121 2-20 (195)
222 3cf2_A TER ATPase, transitiona 96.0 0.0058 2E-07 59.5 5.2 87 78-172 477-581 (806)
223 1svm_A Large T antigen; AAA+ f 96.0 0.0069 2.4E-07 53.8 5.3 35 89-123 157-191 (377)
224 2wwf_A Thymidilate kinase, put 96.0 0.0035 1.2E-07 50.6 3.1 22 100-121 9-30 (212)
225 1nn5_A Similar to deoxythymidy 96.0 0.0037 1.3E-07 50.5 3.2 21 101-121 9-29 (215)
226 1g5t_A COB(I)alamin adenosyltr 96.0 0.0092 3.1E-07 47.8 5.4 47 154-200 112-164 (196)
227 2pjz_A Hypothetical protein ST 96.0 0.0034 1.2E-07 53.0 3.0 20 102-121 31-50 (263)
228 3ice_A Transcription terminati 96.0 0.0096 3.3E-07 52.9 5.9 22 100-121 173-194 (422)
229 1vht_A Dephospho-COA kinase; s 96.0 0.0041 1.4E-07 50.6 3.4 21 101-121 4-24 (218)
230 2f6r_A COA synthase, bifunctio 96.0 0.004 1.4E-07 53.0 3.4 22 100-121 74-95 (281)
231 3sop_A Neuronal-specific septi 96.0 0.0033 1.1E-07 53.3 2.9 23 103-125 4-26 (270)
232 2og2_A Putative signal recogni 96.0 0.0039 1.3E-07 55.0 3.4 22 100-121 156-177 (359)
233 2pez_A Bifunctional 3'-phospho 96.0 0.0042 1.4E-07 48.8 3.3 24 100-123 4-27 (179)
234 1gtv_A TMK, thymidylate kinase 96.0 0.0018 6.1E-08 52.4 1.1 20 102-121 1-20 (214)
235 1zu4_A FTSY; GTPase, signal re 96.0 0.0094 3.2E-07 51.8 5.7 22 100-121 104-125 (320)
236 2z0h_A DTMP kinase, thymidylat 96.0 0.0038 1.3E-07 49.7 3.0 20 103-122 2-21 (197)
237 2grj_A Dephospho-COA kinase; T 96.0 0.0041 1.4E-07 49.9 3.2 22 100-121 11-32 (192)
238 2ffh_A Protein (FFH); SRP54, s 96.0 0.017 6E-07 52.0 7.6 22 100-121 97-118 (425)
239 2v9p_A Replication protein E1; 96.0 0.0066 2.3E-07 52.3 4.7 25 100-124 125-149 (305)
240 1zd8_A GTP:AMP phosphotransfer 95.9 0.0037 1.3E-07 51.3 2.9 22 100-121 6-27 (227)
241 3fvq_A Fe(3+) IONS import ATP- 95.9 0.0035 1.2E-07 55.3 2.9 22 100-121 29-50 (359)
242 2zr9_A Protein RECA, recombina 95.9 0.011 3.9E-07 51.9 6.2 73 100-172 60-150 (349)
243 3fb4_A Adenylate kinase; psych 95.9 0.004 1.4E-07 50.5 3.0 19 103-121 2-20 (216)
244 1np6_A Molybdopterin-guanine d 95.9 0.0042 1.4E-07 49.0 3.0 24 100-123 5-28 (174)
245 2v54_A DTMP kinase, thymidylat 95.9 0.0046 1.6E-07 49.5 3.3 21 101-121 4-24 (204)
246 2bbs_A Cystic fibrosis transme 95.9 0.0039 1.3E-07 53.4 2.9 22 100-121 63-84 (290)
247 1oix_A RAS-related protein RAB 95.9 0.0041 1.4E-07 49.5 2.9 23 100-122 28-50 (191)
248 2qm8_A GTPase/ATPase; G protei 95.9 0.0079 2.7E-07 52.6 5.0 33 90-122 44-76 (337)
249 1m7g_A Adenylylsulfate kinase; 95.9 0.005 1.7E-07 49.9 3.4 24 100-123 24-47 (211)
250 2cvh_A DNA repair and recombin 95.9 0.007 2.4E-07 49.0 4.3 22 100-121 19-40 (220)
251 2px0_A Flagellar biosynthesis 95.9 0.0048 1.6E-07 53.0 3.3 22 100-121 104-125 (296)
252 3dl0_A Adenylate kinase; phosp 95.8 0.0045 1.5E-07 50.2 3.0 19 103-121 2-20 (216)
253 2yl4_A ATP-binding cassette SU 95.8 0.014 4.9E-07 55.1 6.9 22 100-121 369-390 (595)
254 1zak_A Adenylate kinase; ATP:A 95.8 0.0042 1.4E-07 50.7 2.8 22 100-121 4-25 (222)
255 2vp4_A Deoxynucleoside kinase; 95.8 0.005 1.7E-07 50.7 3.1 25 100-124 19-43 (230)
256 3nwj_A ATSK2; P loop, shikimat 95.8 0.0041 1.4E-07 52.1 2.6 21 101-121 48-68 (250)
257 2f9l_A RAB11B, member RAS onco 95.8 0.0046 1.6E-07 49.4 2.8 23 101-123 5-27 (199)
258 2yyz_A Sugar ABC transporter, 95.8 0.0047 1.6E-07 54.5 3.0 22 100-121 28-49 (359)
259 2wji_A Ferrous iron transport 95.7 0.006 2.1E-07 47.1 3.3 22 102-123 4-25 (165)
260 2yv5_A YJEQ protein; hydrolase 95.7 0.0079 2.7E-07 51.8 4.3 31 87-122 156-186 (302)
261 3dm5_A SRP54, signal recogniti 95.7 0.051 1.7E-06 49.2 9.6 22 100-121 99-120 (443)
262 3r20_A Cytidylate kinase; stru 95.7 0.0055 1.9E-07 50.7 3.0 21 101-121 9-29 (233)
263 1g29_1 MALK, maltose transport 95.7 0.0051 1.8E-07 54.6 3.0 21 101-121 29-49 (372)
264 2yhs_A FTSY, cell division pro 95.7 0.0059 2E-07 56.0 3.4 22 100-121 292-313 (503)
265 3ake_A Cytidylate kinase; CMP 95.7 0.0056 1.9E-07 49.1 3.0 19 103-121 4-22 (208)
266 1n0w_A DNA repair protein RAD5 95.7 0.0066 2.3E-07 49.9 3.5 22 100-121 23-44 (243)
267 1v43_A Sugar-binding transport 95.7 0.0052 1.8E-07 54.5 3.0 22 100-121 36-57 (372)
268 2zej_A Dardarin, leucine-rich 95.7 0.0053 1.8E-07 48.3 2.8 22 103-124 4-25 (184)
269 1sky_E F1-ATPase, F1-ATP synth 95.7 0.012 4.2E-07 53.5 5.4 20 102-121 152-171 (473)
270 3fwy_A Light-independent proto 95.7 0.0062 2.1E-07 52.8 3.3 22 100-121 47-68 (314)
271 3thx_B DNA mismatch repair pro 95.6 0.007 2.4E-07 59.8 3.8 23 100-122 672-694 (918)
272 1tue_A Replication protein E1; 95.6 0.0097 3.3E-07 48.1 4.0 37 86-123 44-80 (212)
273 1v5w_A DMC1, meiotic recombina 95.6 0.043 1.5E-06 48.0 8.5 22 100-121 121-142 (343)
274 1nij_A Hypothetical protein YJ 95.6 0.0052 1.8E-07 53.3 2.5 23 100-122 3-25 (318)
275 1oxx_K GLCV, glucose, ABC tran 95.5 0.0041 1.4E-07 54.8 1.7 22 100-121 30-51 (353)
276 3kta_A Chromosome segregation 95.5 0.0067 2.3E-07 47.7 2.9 20 102-121 27-46 (182)
277 1fzq_A ADP-ribosylation factor 95.5 0.01 3.5E-07 46.6 3.9 25 99-123 14-38 (181)
278 1a7j_A Phosphoribulokinase; tr 95.5 0.0034 1.2E-07 53.8 1.1 23 100-122 4-26 (290)
279 3thx_A DNA mismatch repair pro 95.5 0.014 4.9E-07 57.8 5.7 99 100-204 661-790 (934)
280 1nlf_A Regulatory protein REPA 95.5 0.0066 2.2E-07 51.5 2.9 21 101-121 30-50 (279)
281 3gd7_A Fusion complex of cysti 95.5 0.0065 2.2E-07 54.2 2.9 22 100-121 46-67 (390)
282 1cr0_A DNA primase/helicase; R 95.5 0.0067 2.3E-07 51.8 2.9 22 100-121 34-55 (296)
283 1u0l_A Probable GTPase ENGC; p 95.5 0.011 3.9E-07 50.7 4.4 34 87-125 160-193 (301)
284 1pui_A ENGB, probable GTP-bind 95.5 0.0065 2.2E-07 48.8 2.6 26 100-125 25-50 (210)
285 2xb4_A Adenylate kinase; ATP-b 95.5 0.0074 2.5E-07 49.4 3.0 19 103-121 2-20 (223)
286 3d3q_A TRNA delta(2)-isopenten 95.5 0.0077 2.6E-07 52.6 3.2 20 102-121 8-27 (340)
287 2wjg_A FEOB, ferrous iron tran 95.4 0.0089 3.1E-07 46.9 3.3 23 101-123 7-29 (188)
288 1lw7_A Transcriptional regulat 95.4 0.0077 2.6E-07 53.2 3.2 21 101-121 170-190 (365)
289 1e4v_A Adenylate kinase; trans 95.4 0.0077 2.6E-07 48.8 2.9 19 103-121 2-20 (214)
290 1ltq_A Polynucleotide kinase; 95.4 0.0081 2.8E-07 51.4 3.2 21 102-122 3-23 (301)
291 1q3t_A Cytidylate kinase; nucl 95.4 0.0089 3E-07 49.3 3.3 22 100-121 15-36 (236)
292 2p67_A LAO/AO transport system 95.4 0.015 5.2E-07 50.9 4.8 24 99-122 54-77 (341)
293 1p9r_A General secretion pathw 95.4 0.015 5.3E-07 52.3 4.9 23 100-122 166-188 (418)
294 1ak2_A Adenylate kinase isoenz 95.4 0.0096 3.3E-07 49.0 3.3 22 100-121 15-36 (233)
295 3sr0_A Adenylate kinase; phosp 95.3 0.0089 3E-07 48.4 3.0 19 103-121 2-20 (206)
296 2dyk_A GTP-binding protein; GT 95.3 0.01 3.4E-07 45.2 3.2 22 102-123 2-23 (161)
297 3be4_A Adenylate kinase; malar 95.3 0.0084 2.9E-07 48.8 2.9 21 101-121 5-25 (217)
298 1ypw_A Transitional endoplasmi 95.3 0.002 6.9E-08 63.1 -1.1 146 78-229 477-662 (806)
299 3fdi_A Uncharacterized protein 95.3 0.023 7.8E-07 45.8 5.2 21 101-121 6-26 (201)
300 1u0j_A DNA replication protein 95.3 0.019 6.6E-07 48.3 4.9 36 88-123 91-126 (267)
301 3exa_A TRNA delta(2)-isopenten 95.2 0.011 3.6E-07 51.1 3.3 21 101-121 3-23 (322)
302 2www_A Methylmalonic aciduria 95.2 0.011 3.7E-07 52.0 3.5 24 100-123 73-96 (349)
303 1z2a_A RAS-related protein RAB 95.2 0.0097 3.3E-07 45.5 2.8 23 100-122 4-26 (168)
304 3f9v_A Minichromosome maintena 95.2 0.0076 2.6E-07 56.9 2.5 47 77-123 294-349 (595)
305 2ce2_X GTPase HRAS; signaling 95.2 0.0095 3.2E-07 45.3 2.7 20 103-122 5-24 (166)
306 3zvl_A Bifunctional polynucleo 95.2 0.011 3.7E-07 53.3 3.4 24 100-123 257-280 (416)
307 1yrb_A ATP(GTP)binding protein 95.2 0.011 3.8E-07 49.3 3.3 23 100-122 13-35 (262)
308 4f4c_A Multidrug resistance pr 95.2 0.022 7.5E-07 58.8 6.0 22 100-121 443-464 (1321)
309 3crm_A TRNA delta(2)-isopenten 95.2 0.01 3.5E-07 51.5 3.1 21 101-121 5-25 (323)
310 2gj8_A MNME, tRNA modification 95.2 0.0098 3.3E-07 46.3 2.7 22 102-123 5-26 (172)
311 3io5_A Recombination and repai 95.2 0.03 1E-06 48.4 5.9 19 103-121 30-48 (333)
312 3q72_A GTP-binding protein RAD 95.1 0.011 3.6E-07 45.3 2.7 21 103-123 4-24 (166)
313 2xxa_A Signal recognition part 95.1 0.023 8E-07 51.4 5.3 36 86-121 78-120 (433)
314 2lkc_A Translation initiation 95.1 0.015 5E-07 45.1 3.5 24 100-123 7-30 (178)
315 2ged_A SR-beta, signal recogni 95.1 0.015 5.3E-07 45.8 3.7 24 100-123 47-70 (193)
316 3a8t_A Adenylate isopentenyltr 95.1 0.013 4.6E-07 51.0 3.5 22 100-121 39-60 (339)
317 2obl_A ESCN; ATPase, hydrolase 95.1 0.011 3.7E-07 52.0 2.9 22 100-121 70-91 (347)
318 3foz_A TRNA delta(2)-isopenten 95.1 0.014 4.9E-07 50.2 3.6 22 100-121 9-30 (316)
319 2nzj_A GTP-binding protein REM 95.1 0.015 5E-07 44.9 3.4 25 100-124 3-27 (175)
320 2ewv_A Twitching motility prot 95.1 0.013 4.3E-07 52.1 3.4 99 100-201 135-246 (372)
321 3q85_A GTP-binding protein REM 95.1 0.012 3.9E-07 45.3 2.8 21 102-122 3-23 (169)
322 4eaq_A DTMP kinase, thymidylat 95.1 0.014 4.8E-07 48.0 3.4 23 100-122 25-47 (229)
323 1moz_A ARL1, ADP-ribosylation 95.0 0.015 5.3E-07 45.2 3.5 23 100-122 17-39 (183)
324 1u8z_A RAS-related protein RAL 95.0 0.012 4.1E-07 44.9 2.8 22 101-122 4-25 (168)
325 3ozx_A RNAse L inhibitor; ATP 95.0 0.012 4.1E-07 54.9 3.1 22 100-121 24-45 (538)
326 3l0o_A Transcription terminati 95.0 0.032 1.1E-06 49.5 5.6 34 89-123 164-197 (427)
327 2pt7_A CAG-ALFA; ATPase, prote 95.0 0.021 7.1E-07 49.8 4.5 95 102-199 172-275 (330)
328 2dr3_A UPF0273 protein PH0284; 95.0 0.012 4.2E-07 48.3 2.9 22 100-121 22-43 (247)
329 3def_A T7I23.11 protein; chlor 95.0 0.03 1E-06 46.9 5.3 37 87-123 22-58 (262)
330 2erx_A GTP-binding protein DI- 95.0 0.013 4.3E-07 45.0 2.7 22 102-123 4-25 (172)
331 1c1y_A RAS-related protein RAP 95.0 0.013 4.4E-07 44.8 2.8 21 102-122 4-24 (167)
332 1kao_A RAP2A; GTP-binding prot 95.0 0.013 4.3E-07 44.7 2.7 21 102-122 4-24 (167)
333 3cbq_A GTP-binding protein REM 95.0 0.012 4.2E-07 46.8 2.8 23 100-122 22-44 (195)
334 2rcn_A Probable GTPase ENGC; Y 95.0 0.012 4.3E-07 51.7 3.0 23 102-124 216-238 (358)
335 3con_A GTPase NRAS; structural 95.0 0.013 4.3E-07 46.2 2.8 21 102-122 22-42 (190)
336 2gza_A Type IV secretion syste 95.0 0.01 3.5E-07 52.5 2.4 23 101-123 175-197 (361)
337 3g5u_A MCG1178, multidrug resi 94.9 0.034 1.2E-06 57.3 6.5 22 100-121 415-436 (1284)
338 1xp8_A RECA protein, recombina 94.9 0.039 1.3E-06 48.8 6.2 73 100-172 73-163 (366)
339 1ls1_A Signal recognition part 94.9 0.015 5.1E-07 49.9 3.4 22 100-121 97-118 (295)
340 1h65_A Chloroplast outer envel 94.9 0.032 1.1E-06 46.9 5.4 38 86-123 24-61 (270)
341 2qnr_A Septin-2, protein NEDD5 94.9 0.01 3.5E-07 51.0 2.3 22 103-124 20-41 (301)
342 1z08_A RAS-related protein RAB 94.9 0.013 4.6E-07 44.9 2.7 23 100-122 5-27 (170)
343 1nrj_B SR-beta, signal recogni 94.9 0.016 5.5E-07 46.7 3.3 23 100-122 11-33 (218)
344 1ek0_A Protein (GTP-binding pr 94.9 0.014 4.7E-07 44.7 2.8 21 102-122 4-24 (170)
345 1z0j_A RAB-22, RAS-related pro 94.9 0.014 4.7E-07 44.7 2.7 22 101-122 6-27 (170)
346 1pzn_A RAD51, DNA repair and r 94.9 0.018 6.3E-07 50.6 3.8 22 100-121 130-151 (349)
347 3euj_A Chromosome partition pr 94.9 0.015 5E-07 53.4 3.2 22 102-123 30-51 (483)
348 2v3c_C SRP54, signal recogniti 94.8 0.017 5.9E-07 52.2 3.7 36 86-121 77-119 (432)
349 2npi_A Protein CLP1; CLP1-PCF1 94.8 0.011 3.9E-07 53.9 2.5 26 100-125 137-162 (460)
350 1wms_A RAB-9, RAB9, RAS-relate 94.8 0.014 4.8E-07 45.1 2.7 23 100-122 6-28 (177)
351 1svi_A GTP-binding protein YSX 94.8 0.017 5.7E-07 45.6 3.2 25 100-124 22-46 (195)
352 1yqt_A RNAse L inhibitor; ATP- 94.8 0.013 4.6E-07 54.6 3.0 22 100-121 46-67 (538)
353 1r8s_A ADP-ribosylation factor 94.8 0.015 5E-07 44.4 2.8 20 103-122 2-21 (164)
354 2qag_B Septin-6, protein NEDD5 94.8 0.011 3.8E-07 53.2 2.3 21 104-124 45-65 (427)
355 4f4c_A Multidrug resistance pr 94.8 0.029 1E-06 57.9 5.7 22 100-121 1104-1125(1321)
356 3tw8_B RAS-related protein RAB 94.8 0.017 5.9E-07 44.7 3.2 24 100-123 8-31 (181)
357 1g16_A RAS-related protein SEC 94.8 0.015 5E-07 44.6 2.7 22 101-122 3-24 (170)
358 1zj6_A ADP-ribosylation factor 94.8 0.031 1.1E-06 43.8 4.7 23 100-122 15-37 (187)
359 2j37_W Signal recognition part 94.8 0.03 1E-06 51.7 5.1 36 86-121 79-121 (504)
360 3pqc_A Probable GTP-binding pr 94.8 0.018 6.2E-07 45.2 3.3 24 100-123 22-45 (195)
361 3j16_B RLI1P; ribosome recycli 94.8 0.014 4.9E-07 55.2 3.0 22 100-121 102-123 (608)
362 1m7b_A RND3/RHOE small GTP-bin 94.8 0.015 5.1E-07 45.6 2.7 23 100-122 6-28 (184)
363 3ihw_A Centg3; RAS, centaurin, 94.7 0.015 5.2E-07 45.7 2.7 22 100-121 19-40 (184)
364 4a1f_A DNAB helicase, replicat 94.7 0.079 2.7E-06 46.2 7.5 22 100-121 45-66 (338)
365 1f6b_A SAR1; gtpases, N-termin 94.7 0.013 4.4E-07 46.8 2.3 24 101-124 25-48 (198)
366 1ega_A Protein (GTP-binding pr 94.7 0.015 5.2E-07 49.9 2.9 24 100-123 7-30 (301)
367 1r2q_A RAS-related protein RAB 94.7 0.016 5.5E-07 44.3 2.8 22 101-122 6-27 (170)
368 3ozx_A RNAse L inhibitor; ATP 94.7 0.015 5.1E-07 54.2 3.0 21 101-121 294-314 (538)
369 1ky3_A GTP-binding protein YPT 94.7 0.02 6.7E-07 44.4 3.3 23 100-122 7-29 (182)
370 2qmh_A HPR kinase/phosphorylas 94.7 0.016 5.4E-07 46.6 2.7 21 101-121 34-54 (205)
371 4gzl_A RAS-related C3 botulinu 94.7 0.018 6.1E-07 46.1 3.1 22 100-121 29-50 (204)
372 1p5z_B DCK, deoxycytidine kina 94.7 0.015 5.2E-07 48.8 2.7 23 100-122 23-45 (263)
373 2ocp_A DGK, deoxyguanosine kin 94.7 0.019 6.4E-07 47.5 3.2 22 101-122 2-23 (241)
374 2cxx_A Probable GTP-binding pr 94.7 0.015 5.3E-07 45.5 2.6 21 103-123 3-23 (190)
375 1f2t_A RAD50 ABC-ATPase; DNA d 94.6 0.022 7.4E-07 43.5 3.3 21 101-121 23-43 (149)
376 2cjw_A GTP-binding protein GEM 94.6 0.017 5.8E-07 45.9 2.8 22 101-122 6-27 (192)
377 2hxs_A RAB-26, RAS-related pro 94.6 0.017 5.8E-07 44.7 2.7 25 100-124 5-29 (178)
378 1m2o_B GTP-binding protein SAR 94.6 0.016 5.6E-07 45.8 2.7 22 101-122 23-44 (190)
379 1upt_A ARL1, ADP-ribosylation 94.6 0.023 7.8E-07 43.6 3.4 23 100-122 6-28 (171)
380 2fn4_A P23, RAS-related protei 94.6 0.022 7.5E-07 44.1 3.4 23 100-122 8-30 (181)
381 4dsu_A GTPase KRAS, isoform 2B 94.6 0.017 5.9E-07 45.1 2.7 22 101-122 4-25 (189)
382 1z0f_A RAB14, member RAS oncog 94.6 0.018 6E-07 44.6 2.8 23 100-122 14-36 (179)
383 3t1o_A Gliding protein MGLA; G 94.6 0.017 6E-07 45.4 2.8 21 101-121 14-34 (198)
384 1yqt_A RNAse L inhibitor; ATP- 94.6 0.017 5.7E-07 53.9 3.0 21 101-121 312-332 (538)
385 3bc1_A RAS-related protein RAB 94.6 0.018 6.1E-07 45.1 2.8 23 100-122 10-32 (195)
386 2y8e_A RAB-protein 6, GH09086P 94.6 0.018 6E-07 44.6 2.7 21 102-122 15-35 (179)
387 2dpy_A FLII, flagellum-specifi 94.6 0.017 5.8E-07 52.4 2.9 22 100-121 156-177 (438)
388 3kkq_A RAS-related protein M-R 94.6 0.018 6.3E-07 44.8 2.8 23 100-122 17-39 (183)
389 1t9h_A YLOQ, probable GTPase E 94.5 0.0088 3E-07 51.6 0.9 24 102-125 174-197 (307)
390 3c5c_A RAS-like protein 12; GD 94.5 0.019 6.4E-07 45.3 2.7 23 100-122 20-42 (187)
391 3bk7_A ABC transporter ATP-bin 94.5 0.018 6E-07 54.5 3.0 22 100-121 116-137 (607)
392 2bme_A RAB4A, RAS-related prot 94.5 0.018 6.3E-07 44.9 2.7 23 100-122 9-31 (186)
393 2efe_B Small GTP-binding prote 94.5 0.019 6.5E-07 44.6 2.7 22 101-122 12-33 (181)
394 3bk7_A ABC transporter ATP-bin 94.5 0.018 6.1E-07 54.5 3.0 21 101-121 382-402 (607)
395 2oil_A CATX-8, RAS-related pro 94.5 0.019 6.6E-07 45.2 2.8 23 100-122 24-46 (193)
396 2bov_A RAla, RAS-related prote 94.5 0.019 6.5E-07 45.6 2.8 23 100-122 13-35 (206)
397 2a9k_A RAS-related protein RAL 94.5 0.019 6.6E-07 44.6 2.8 23 100-122 17-39 (187)
398 2h92_A Cytidylate kinase; ross 94.5 0.018 6.1E-07 46.7 2.6 20 102-121 4-23 (219)
399 3t5g_A GTP-binding protein RHE 94.5 0.019 6.6E-07 44.6 2.7 23 100-122 5-27 (181)
400 2qag_C Septin-7; cell cycle, c 94.4 0.018 6.1E-07 51.9 2.7 20 104-123 34-53 (418)
401 1mh1_A RAC1; GTP-binding, GTPa 94.4 0.02 6.9E-07 44.6 2.8 21 101-121 5-25 (186)
402 3lxx_A GTPase IMAP family memb 94.4 0.023 7.9E-07 46.8 3.3 24 100-123 28-51 (239)
403 3iev_A GTP-binding protein ERA 94.4 0.022 7.5E-07 49.1 3.2 24 99-122 8-31 (308)
404 3eph_A TRNA isopentenyltransfe 94.4 0.021 7.3E-07 50.9 3.1 20 102-121 3-22 (409)
405 3k53_A Ferrous iron transport 94.4 0.022 7.5E-07 48.0 3.1 22 101-122 3-24 (271)
406 3cr8_A Sulfate adenylyltranfer 94.4 0.016 5.6E-07 54.0 2.5 24 100-123 368-391 (552)
407 3bwd_D RAC-like GTP-binding pr 94.4 0.021 7.2E-07 44.3 2.8 23 100-122 7-29 (182)
408 2g6b_A RAS-related protein RAB 94.4 0.021 7.3E-07 44.2 2.8 23 100-122 9-31 (180)
409 1vg8_A RAS-related protein RAB 94.4 0.025 8.7E-07 45.0 3.3 23 100-122 7-29 (207)
410 3j16_B RLI1P; ribosome recycli 94.4 0.02 6.9E-07 54.1 3.0 20 102-121 379-398 (608)
411 1mky_A Probable GTP-binding pr 94.3 0.05 1.7E-06 49.3 5.5 44 81-124 151-203 (439)
412 3clv_A RAB5 protein, putative; 94.3 0.021 7.3E-07 45.0 2.7 22 100-121 6-27 (208)
413 2qu8_A Putative nucleolar GTP- 94.3 0.029 9.8E-07 45.8 3.6 24 100-123 28-51 (228)
414 2iwr_A Centaurin gamma 1; ANK 94.3 0.016 5.4E-07 45.0 1.9 22 101-122 7-28 (178)
415 3end_A Light-independent proto 94.3 0.025 8.5E-07 48.5 3.3 22 100-121 40-61 (307)
416 2oap_1 GSPE-2, type II secreti 94.3 0.035 1.2E-06 51.3 4.5 22 102-123 261-282 (511)
417 2atv_A RERG, RAS-like estrogen 94.3 0.022 7.6E-07 45.1 2.7 23 100-122 27-49 (196)
418 4bas_A ADP-ribosylation factor 94.3 0.027 9.1E-07 44.5 3.2 25 100-124 16-40 (199)
419 1ksh_A ARF-like protein 2; sma 94.3 0.023 7.8E-07 44.4 2.8 24 100-123 17-40 (186)
420 3upu_A ATP-dependent DNA helic 94.3 0.044 1.5E-06 49.9 5.0 36 83-121 30-65 (459)
421 1zbd_A Rabphilin-3A; G protein 94.3 0.023 7.8E-07 45.2 2.8 22 101-122 8-29 (203)
422 2b6h_A ADP-ribosylation factor 94.3 0.022 7.6E-07 45.1 2.7 23 100-122 28-50 (192)
423 3dz8_A RAS-related protein RAB 94.3 0.022 7.7E-07 44.9 2.7 23 100-122 22-44 (191)
424 2gf9_A RAS-related protein RAB 94.3 0.023 8E-07 44.6 2.8 23 100-122 21-43 (189)
425 2ew1_A RAS-related protein RAB 94.2 0.022 7.6E-07 45.6 2.7 23 100-122 25-47 (201)
426 2gf0_A GTP-binding protein DI- 94.2 0.022 7.6E-07 44.9 2.7 23 100-122 7-29 (199)
427 2x77_A ADP-ribosylation factor 94.2 0.041 1.4E-06 43.1 4.2 24 100-123 21-44 (189)
428 2fg5_A RAB-22B, RAS-related pr 94.2 0.023 7.8E-07 44.9 2.7 23 100-122 22-44 (192)
429 3tkl_A RAS-related protein RAB 94.2 0.024 8.2E-07 44.7 2.8 23 100-122 15-37 (196)
430 3b60_A Lipid A export ATP-bind 94.2 0.024 8.2E-07 53.4 3.2 22 100-121 368-389 (582)
431 1zd9_A ADP-ribosylation factor 94.2 0.024 8.3E-07 44.6 2.8 22 101-122 22-43 (188)
432 3oes_A GTPase rhebl1; small GT 94.2 0.023 7.9E-07 45.2 2.7 23 100-122 23-45 (201)
433 1gwn_A RHO-related GTP-binding 94.2 0.023 7.9E-07 45.6 2.7 23 100-122 27-49 (205)
434 3lda_A DNA repair protein RAD5 94.2 0.028 9.5E-07 50.3 3.4 22 100-121 177-198 (400)
435 2g3y_A GTP-binding protein GEM 94.2 0.024 8.2E-07 46.0 2.7 23 100-122 36-58 (211)
436 2a5j_A RAS-related protein RAB 94.1 0.025 8.6E-07 44.6 2.8 22 101-122 21-42 (191)
437 3reg_A RHO-like small GTPase; 94.1 0.025 8.6E-07 44.6 2.8 23 100-122 22-44 (194)
438 2il1_A RAB12; G-protein, GDP, 94.1 0.025 8.7E-07 44.7 2.8 24 101-124 26-49 (192)
439 1z06_A RAS-related protein RAB 94.1 0.025 8.7E-07 44.4 2.7 23 100-122 19-41 (189)
440 2o52_A RAS-related protein RAB 94.1 0.025 8.4E-07 45.1 2.7 24 100-123 24-47 (200)
441 2h57_A ADP-ribosylation factor 94.1 0.025 8.4E-07 44.5 2.7 26 100-125 20-45 (190)
442 2fh5_B SR-beta, signal recogni 94.1 0.025 8.6E-07 45.4 2.8 23 100-122 6-28 (214)
443 1g8f_A Sulfate adenylyltransfe 94.1 0.03 1E-06 51.7 3.5 41 81-121 375-415 (511)
444 3llu_A RAS-related GTP-binding 94.1 0.025 8.6E-07 44.8 2.7 24 100-123 19-42 (196)
445 1x3s_A RAS-related protein RAB 94.1 0.027 9.2E-07 44.3 2.8 22 101-122 15-36 (195)
446 2bcg_Y Protein YP2, GTP-bindin 94.0 0.026 8.8E-07 45.0 2.7 23 100-122 7-29 (206)
447 2q3h_A RAS homolog gene family 94.0 0.027 9.2E-07 44.7 2.8 25 100-124 19-43 (201)
448 2p5s_A RAS and EF-hand domain 94.0 0.027 9.3E-07 44.7 2.8 23 100-122 27-49 (199)
449 1tf7_A KAIC; homohexamer, hexa 94.0 0.026 8.7E-07 52.5 2.9 21 100-120 38-58 (525)
450 2j1l_A RHO-related GTP-binding 93.9 0.027 9.4E-07 45.4 2.7 24 100-123 33-56 (214)
451 2h17_A ADP-ribosylation factor 93.9 0.026 8.8E-07 44.1 2.3 24 100-123 20-43 (181)
452 2fv8_A H6, RHO-related GTP-bin 93.8 0.029 1E-06 44.9 2.7 22 101-122 25-46 (207)
453 3cph_A RAS-related protein SEC 93.8 0.031 1E-06 44.7 2.8 23 100-122 19-41 (213)
454 2orw_A Thymidine kinase; TMTK, 93.8 0.033 1.1E-06 44.1 2.9 20 102-121 4-23 (184)
455 2fu5_C RAS-related protein RAB 93.8 0.02 6.7E-07 44.7 1.6 24 100-123 7-30 (183)
456 2r8r_A Sensor protein; KDPD, P 93.8 0.031 1.1E-06 45.8 2.8 20 102-121 7-26 (228)
457 2axn_A 6-phosphofructo-2-kinas 93.8 0.036 1.2E-06 51.4 3.4 22 100-121 34-55 (520)
458 3hdt_A Putative kinase; struct 93.8 0.054 1.9E-06 44.3 4.2 37 101-138 14-58 (223)
459 2atx_A Small GTP binding prote 93.7 0.032 1.1E-06 44.0 2.7 22 101-122 18-39 (194)
460 4dhe_A Probable GTP-binding pr 93.7 0.026 8.8E-07 45.6 2.1 25 100-124 28-52 (223)
461 3b1v_A Ferrous iron uptake tra 93.7 0.037 1.3E-06 46.7 3.2 23 101-123 3-25 (272)
462 2hup_A RAS-related protein RAB 93.7 0.033 1.1E-06 44.4 2.7 23 100-122 28-50 (201)
463 1cp2_A CP2, nitrogenase iron p 93.7 0.036 1.2E-06 46.4 3.0 20 102-121 2-21 (269)
464 2f7s_A C25KG, RAS-related prot 93.7 0.034 1.2E-06 44.7 2.8 23 100-122 24-46 (217)
465 2gco_A H9, RHO-related GTP-bin 93.7 0.034 1.1E-06 44.3 2.7 22 101-122 25-46 (201)
466 2xtp_A GTPase IMAP family memb 93.7 0.039 1.3E-06 46.0 3.2 23 100-122 21-43 (260)
467 2j0v_A RAC-like GTP-binding pr 93.7 0.033 1.1E-06 44.6 2.7 23 100-122 8-30 (212)
468 2qtf_A Protein HFLX, GTP-bindi 93.7 0.035 1.2E-06 49.1 3.0 26 100-125 178-203 (364)
469 3gmt_A Adenylate kinase; ssgci 93.6 0.034 1.2E-06 45.7 2.7 21 101-121 8-28 (230)
470 1wf3_A GTP-binding protein; GT 93.6 0.035 1.2E-06 47.6 2.9 23 100-122 6-28 (301)
471 3q3j_B RHO-related GTP-binding 93.6 0.036 1.2E-06 44.7 2.8 22 101-122 27-48 (214)
472 3qf4_B Uncharacterized ABC tra 93.6 0.027 9.4E-07 53.2 2.3 22 100-121 380-401 (598)
473 3ch4_B Pmkase, phosphomevalona 93.5 0.051 1.7E-06 43.7 3.5 84 100-183 10-124 (202)
474 3iby_A Ferrous iron transport 93.5 0.039 1.3E-06 46.2 2.9 21 102-122 2-22 (256)
475 4edh_A DTMP kinase, thymidylat 93.5 0.044 1.5E-06 44.5 3.2 21 101-121 6-26 (213)
476 1zcb_A G alpha I/13; GTP-bindi 93.5 0.046 1.6E-06 48.3 3.5 22 100-121 32-53 (362)
477 3qks_A DNA double-strand break 93.5 0.047 1.6E-06 43.9 3.3 21 101-121 23-43 (203)
478 3tqf_A HPR(Ser) kinase; transf 93.5 0.039 1.3E-06 43.2 2.6 21 101-121 16-36 (181)
479 4dkx_A RAS-related protein RAB 93.4 0.04 1.4E-06 44.9 2.8 19 103-121 15-33 (216)
480 3lv8_A DTMP kinase, thymidylat 93.4 0.044 1.5E-06 45.3 3.1 22 100-121 26-47 (236)
481 2e87_A Hypothetical protein PH 93.4 0.048 1.6E-06 48.0 3.4 24 100-123 166-189 (357)
482 2aka_B Dynamin-1; fusion prote 93.4 0.086 3E-06 44.7 5.0 35 87-121 8-46 (299)
483 3t5d_A Septin-7; GTP-binding p 93.4 0.04 1.4E-06 46.5 2.8 24 101-124 8-31 (274)
484 2afh_E Nitrogenase iron protei 93.4 0.046 1.6E-06 46.4 3.2 21 101-121 2-22 (289)
485 1jwy_B Dynamin A GTPase domain 93.4 0.036 1.2E-06 47.5 2.6 24 99-122 22-45 (315)
486 3lxw_A GTPase IMAP family memb 93.3 0.041 1.4E-06 45.7 2.8 24 100-123 20-43 (247)
487 1ni3_A YCHF GTPase, YCHF GTP-b 93.3 0.04 1.4E-06 49.1 2.8 24 100-123 19-42 (392)
488 3ld9_A DTMP kinase, thymidylat 93.3 0.056 1.9E-06 44.3 3.5 24 100-123 20-43 (223)
489 3szr_A Interferon-induced GTP- 93.3 0.044 1.5E-06 51.9 3.2 25 100-124 44-68 (608)
490 1qhl_A Protein (cell division 93.3 0.0068 2.3E-07 49.9 -2.1 21 102-122 28-48 (227)
491 1bif_A 6-phosphofructo-2-kinas 93.3 0.047 1.6E-06 49.9 3.3 22 100-121 38-59 (469)
492 3cmu_A Protein RECA, recombina 93.2 0.19 6.5E-06 53.6 8.0 72 100-171 1426-1515(2050)
493 3gj0_A GTP-binding nuclear pro 93.2 0.033 1.1E-06 45.1 1.9 22 100-121 14-35 (221)
494 2o5v_A DNA replication and rep 93.2 0.051 1.7E-06 47.9 3.3 22 102-123 27-48 (359)
495 2iw3_A Elongation factor 3A; a 93.2 0.042 1.4E-06 54.6 3.0 23 100-122 460-482 (986)
496 3e1s_A Exodeoxyribonuclease V, 93.2 0.079 2.7E-06 49.8 4.7 33 85-121 192-224 (574)
497 3qf7_A RAD50; ABC-ATPase, ATPa 93.2 0.051 1.8E-06 48.0 3.3 21 102-122 24-44 (365)
498 3ux8_A Excinuclease ABC, A sub 93.2 0.035 1.2E-06 53.2 2.4 21 101-121 348-368 (670)
499 3cpj_B GTP-binding protein YPT 93.1 0.046 1.6E-06 44.3 2.8 23 100-122 12-34 (223)
500 3qkt_A DNA double-strand break 93.1 0.053 1.8E-06 47.3 3.3 21 101-121 23-43 (339)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.98 E-value=2.5e-31 Score=251.18 Aligned_cols=182 Identities=15% Similarity=0.134 Sum_probs=146.6
Q ss_pred CceeehhHHHHHHHHHHhcC-CCCceEEEEEcCCCChHHHHHHHhhC-------------------------hhHHHHHH
Q 048597 78 RTVIRQELLLDRVWRFVTDQ-ERNRGIIGLYGTGGVGKTTLLKQRAN-------------------------LKKIQADI 131 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~~GiGKTtLa~~v~~-------------------------~~~i~~~i 131 (294)
+..|||+.++++|.++|... ....++|+|+||||+||||||+.+++ ...++..|
T Consensus 128 ~~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 128 MTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CccCCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 33369999999999999765 34689999999999999999999974 34567778
Q ss_pred HHHhCCCCC-----CcccCChHHHHHHHHHHhccC-CeEEEEccccCccchhhhcCCcCCCCCCcEEEEecCChHHhhcc
Q 048597 132 GKKIGLSTK-----SWQENSFEDKALDIAGILSRK-RFVLLLDDIWEHINLNKLGVPLQYLHLGSKIVFTTNSRVVCGQM 205 (294)
Q Consensus 132 ~~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~k-r~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~ 205 (294)
+.+++.... .....+...+...+++.|.++ ||||||||||+...+ .+. . ..||+||||||+..++..+
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~----~-~~gs~ilvTTR~~~v~~~~ 281 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA----Q-ELRLRCLVTTRDVEISNAA 281 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH----H-HTTCEEEEEESBGGGGGGC
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc----c-cCCCEEEEEcCCHHHHHHc
Confidence 888765321 112234566788999999996 999999999997654 221 1 1689999999999999888
Q ss_pred C-Cce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHHHHHcCC
Q 048597 206 E-ATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVGRAMRSI 267 (294)
Q Consensus 206 ~-~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~~L~~~ 267 (294)
+ ... |+|++|+.++||+||.++++... .++.+.+++++|+++|+|+||||+++|+.|+.+
T Consensus 282 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~ 343 (549)
T 2a5y_B 282 SQTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK 343 (549)
T ss_dssp CSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS
T ss_pred CCCCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc
Confidence 6 334 99999999999999999987643 246788899999999999999999999999874
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.95 E-value=2.3e-27 Score=242.56 Aligned_cols=196 Identities=18% Similarity=0.338 Sum_probs=154.5
Q ss_pred CcCceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHH-------------------------HHH
Q 048597 76 VERTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKI-------------------------QAD 130 (294)
Q Consensus 76 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i-------------------------~~~ 130 (294)
....||||+.++++|.++|...+...++|+|+||||+||||||+++++..+. ...
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 201 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQN 201 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHH
Confidence 3466999999999999999876668899999999999999999998554321 233
Q ss_pred HHHHhCCCCC--CcccCChHHHHHHHHHHhccC--CeEEEEccccCccchhhhcCCcCCCCCCcEEEEecCChHHhhc-c
Q 048597 131 IGKKIGLSTK--SWQENSFEDKALDIAGILSRK--RFVLLLDDIWEHINLNKLGVPLQYLHLGSKIVFTTNSRVVCGQ-M 205 (294)
Q Consensus 131 i~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~k--r~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~-~ 205 (294)
+...+..... .....+...+...++..+.++ |+||||||+|+...|..+ ..||+||+|||+..++.. +
T Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~ 274 (1249)
T 3sfz_A 202 LCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVM 274 (1249)
T ss_dssp HHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCC
T ss_pred HHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhc
Confidence 4444432211 112356778888888888877 999999999998777654 458999999999999854 3
Q ss_pred CCce-eecCC-CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 048597 206 EATM-LNASP-LRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVGRAMRSISSIEEWEHAIKIILRY 283 (294)
Q Consensus 206 ~~~~-~~l~~-L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~~L~~~~~~~~w~~~l~~l~~~ 283 (294)
.... +++.+ |+++++++||...++... +.+.+.+++|+++|+|+||||+.+|++|+.+. ..|+..++.+...
T Consensus 275 ~~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~ 348 (1249)
T 3sfz_A 275 GPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNK 348 (1249)
T ss_dssp SCBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSC
T ss_pred CCceEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhh
Confidence 4444 99996 999999999999885432 33446789999999999999999999999853 5799999999875
Q ss_pred C
Q 048597 284 G 284 (294)
Q Consensus 284 ~ 284 (294)
.
T Consensus 349 ~ 349 (1249)
T 3sfz_A 349 Q 349 (1249)
T ss_dssp C
T ss_pred h
Confidence 4
No 3
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.93 E-value=5.3e-26 Score=216.55 Aligned_cols=196 Identities=19% Similarity=0.327 Sum_probs=146.8
Q ss_pred CcCceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHH-HHHH-----------------------
Q 048597 76 VERTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKI-QADI----------------------- 131 (294)
Q Consensus 76 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i-~~~i----------------------- 131 (294)
..+.||||+.++++|.++|.......++|+|+||||+||||||..+++..++ ...|
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~ 201 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQN 201 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHH
Confidence 4567999999999999999865557899999999999999999998665433 2222
Q ss_pred -HHHhCCC--CCCcccCChHHHHHHHHHHhcc--CCeEEEEccccCccchhhhcCCcCCCCCCcEEEEecCChHHhhccC
Q 048597 132 -GKKIGLS--TKSWQENSFEDKALDIAGILSR--KRFVLLLDDIWEHINLNKLGVPLQYLHLGSKIVFTTNSRVVCGQME 206 (294)
Q Consensus 132 -~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~--kr~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~ 206 (294)
...++.. .......+.......+...+.+ +++||||||+|+...+..+ ..|++||+|||+..++..+.
T Consensus 202 l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~ 274 (591)
T 1z6t_A 202 LCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVM 274 (591)
T ss_dssp HHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCC
T ss_pred HHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhcC
Confidence 1122210 0011234556677778887766 7899999999986655532 34789999999999887655
Q ss_pred Cceeec---CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 048597 207 ATMLNA---SPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVGRAMRSISSIEEWEHAIKIILRY 283 (294)
Q Consensus 207 ~~~~~l---~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~~L~~~~~~~~w~~~l~~l~~~ 283 (294)
...+++ ++|+.+++++||...++... +...+.+.+|+++|+|+|||+..+|+.|+.+ ..+|+.+++.+...
T Consensus 275 ~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~~ 348 (591)
T 1z6t_A 275 GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNK 348 (591)
T ss_dssp SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHSC
T ss_pred CCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHHh
Confidence 443444 58999999999999886532 1123568999999999999999999999874 34799999998865
Q ss_pred C
Q 048597 284 G 284 (294)
Q Consensus 284 ~ 284 (294)
.
T Consensus 349 ~ 349 (591)
T 1z6t_A 349 Q 349 (591)
T ss_dssp C
T ss_pred H
Confidence 4
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.93 E-value=4.7e-26 Score=222.16 Aligned_cols=178 Identities=17% Similarity=0.197 Sum_probs=130.1
Q ss_pred eeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHH-HhCCCCCC-----------------
Q 048597 80 VIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGK-KIGLSTKS----------------- 141 (294)
Q Consensus 80 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~-~~~~~~~~----------------- 141 (294)
.|||+.++++|.++|...+ ..++|+|+||||+||||||+.+++..++...|.. .+|++...
T Consensus 130 ~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 4999999999999998632 5789999999999999999999755444444432 22211100
Q ss_pred --------cc-----cCChHHHHHHHHHHh---ccCCeEEEEccccCccchhhhcCCcCCCCCCcEEEEecCChHHhhcc
Q 048597 142 --------WQ-----ENSFEDKALDIAGIL---SRKRFVLLLDDIWEHINLNKLGVPLQYLHLGSKIVFTTNSRVVCGQM 205 (294)
Q Consensus 142 --------~~-----~~~~~~~~~~l~~~l---~~kr~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~ 205 (294)
.. ..+.+.+...+++.| .++|+||||||+|+.+.|+.+. .||+||||||+..++..+
T Consensus 209 i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l 281 (1221)
T 1vt4_I 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFL 281 (1221)
T ss_dssp HCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHH
T ss_pred cCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhc
Confidence 00 012234455666655 6799999999999988887652 589999999999988654
Q ss_pred CCce-eecC------CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHHHHHcCC-CCHHHHHH
Q 048597 206 EATM-LNAS------PLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVGRAMRSI-SSIEEWEH 275 (294)
Q Consensus 206 ~~~~-~~l~------~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~~L~~~-~~~~~w~~ 275 (294)
.... |+++ +|++++||+||.+.+... .. ++..+| |+|+||||.++|+.|+.+ .+.++|+.
T Consensus 282 ~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~----~e---eL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~ 349 (1221)
T 1vt4_I 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR----PQ---DLPREV---LTTNPRRLSIIAESIRDGLATWDNWKH 349 (1221)
T ss_dssp HHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC----TT---THHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred CCCeEEEecCccccCCcCHHHHHHHHHHHcCCC----HH---HHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhc
Confidence 4333 6677 999999999999985432 12 233443 999999999999999986 36788864
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.62 E-value=9.7e-15 Score=129.33 Aligned_cols=181 Identities=13% Similarity=0.112 Sum_probs=118.0
Q ss_pred CcCceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhC--------------------hhHHHHHHHHHh
Q 048597 76 VERTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRAN--------------------LKKIQADIGKKI 135 (294)
Q Consensus 76 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~--------------------~~~i~~~i~~~~ 135 (294)
.+..++||+.+++.|.+++..+ +++.|+|++|+|||||++.+.+ ...+...+...+
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 85 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIKELQSTI 85 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHHHHHTTTCBCHHHHHHHHHHHS
T ss_pred ChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeecccccccCCCHHHHHHHHHHHH
Confidence 4567899999999999998764 7999999999999999998732 112233343333
Q ss_pred CC--------------CCC--CcccCChHHHHHHHHHHhcc-CCeEEEEccccCccc---------hhhhcCCcCCCCCC
Q 048597 136 GL--------------STK--SWQENSFEDKALDIAGILSR-KRFVLLLDDIWEHIN---------LNKLGVPLQYLHLG 189 (294)
Q Consensus 136 ~~--------------~~~--~~~~~~~~~~~~~l~~~l~~-kr~LlvlDdv~~~~~---------~~~l~~~l~~~~~g 189 (294)
.. ... .....+...+...+.+.... ++++|||||++.... +..+...+. ...+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~-~~~~ 164 (350)
T 2qen_A 86 SPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD-SLPN 164 (350)
T ss_dssp CSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH-HCTT
T ss_pred HHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH-hcCC
Confidence 21 000 00123455555666655543 499999999977432 222222111 1236
Q ss_pred cEEEEecCChHH-hhc----------c-CCc-eeecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHH
Q 048597 190 SKIVFTTNSRVV-CGQ----------M-EAT-MLNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLA 256 (294)
Q Consensus 190 s~iivTtr~~~v-~~~----------~-~~~-~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla 256 (294)
.++|+|++.... ... . ... .+++.||+.+++.+++.+.+....... -.+....|++.|+|+|++
T Consensus 165 ~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~---~~~~~~~i~~~tgG~P~~ 241 (350)
T 2qen_A 165 LKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV---PENEIEEAVELLDGIPGW 241 (350)
T ss_dssp EEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC---CHHHHHHHHHHHTTCHHH
T ss_pred eEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhCCCHHH
Confidence 789999887543 211 1 112 399999999999999987653322111 135678999999999999
Q ss_pred HHHHHHHH
Q 048597 257 LKTVGRAM 264 (294)
Q Consensus 257 i~~i~~~L 264 (294)
+..++..+
T Consensus 242 l~~~~~~~ 249 (350)
T 2qen_A 242 LVVFGVEY 249 (350)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.59 E-value=1e-14 Score=129.46 Aligned_cols=179 Identities=16% Similarity=0.153 Sum_probs=110.4
Q ss_pred CcCceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhCh---------------------hHHHHHHHHH
Q 048597 76 VERTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANL---------------------KKIQADIGKK 134 (294)
Q Consensus 76 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~---------------------~~i~~~i~~~ 134 (294)
.+..++||+.+++.|.+ +.. +++.|+|++|+|||||++.+.+. ..+...+...
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKE 84 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHHH
Confidence 45678999999999998 654 69999999999999999987211 1222222222
Q ss_pred hC------------------CCCCC----c-----ccCChHHHHHHHHHHhccCCeEEEEccccCcc-----chhhhcCC
Q 048597 135 IG------------------LSTKS----W-----QENSFEDKALDIAGILSRKRFVLLLDDIWEHI-----NLNKLGVP 182 (294)
Q Consensus 135 ~~------------------~~~~~----~-----~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~-----~~~~l~~~ 182 (294)
+. +.... . .......+...+.+... ++++|||||++... ++..+...
T Consensus 85 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~ 163 (357)
T 2fna_A 85 INKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAY 163 (357)
T ss_dssp HHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHH
T ss_pred HHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHH
Confidence 10 00000 0 01233444444443222 48999999997622 22222222
Q ss_pred cCCCCCCcEEEEecCChHHhh-----------ccCC-ce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHh
Q 048597 183 LQYLHLGSKIVFTTNSRVVCG-----------QMEA-TM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEE 249 (294)
Q Consensus 183 l~~~~~gs~iivTtr~~~v~~-----------~~~~-~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~ 249 (294)
+.....+.++|+|++...... ..+. .. +++.+|+.+++.+++...+....... ... ..|++.
T Consensus 164 ~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~-~~~----~~i~~~ 238 (357)
T 2fna_A 164 AYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF-KDY----EVVYEK 238 (357)
T ss_dssp HHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC-CCH----HHHHHH
T ss_pred HHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC-CcH----HHHHHH
Confidence 212223678999999765311 1111 23 99999999999999987653211111 221 789999
Q ss_pred CCCChHHHHHHHHHHcC
Q 048597 250 CCCLPLALKTVGRAMRS 266 (294)
Q Consensus 250 c~GlPlai~~i~~~L~~ 266 (294)
|+|+|+++..++..+..
T Consensus 239 t~G~P~~l~~~~~~~~~ 255 (357)
T 2fna_A 239 IGGIPGWLTYFGFIYLD 255 (357)
T ss_dssp HCSCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHcc
Confidence 99999999999887653
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.49 E-value=2.8e-13 Score=122.78 Aligned_cols=183 Identities=13% Similarity=0.064 Sum_probs=113.7
Q ss_pred cCceeehhHHHHHHHHHH-hcC--C--CCceEEEE--EcCCCChHHHHHHHhhChh------------------------
Q 048597 77 ERTVIRQELLLDRVWRFV-TDQ--E--RNRGIIGL--YGTGGVGKTTLLKQRANLK------------------------ 125 (294)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L-~~~--~--~~~~vi~I--~G~~GiGKTtLa~~v~~~~------------------------ 125 (294)
+..++||+.+++.+..++ ... . .....+.| +|++|+|||||++.+.+..
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 467899999999999988 421 1 23456666 9999999999999874321
Q ss_pred -HHHHHHHHHhCCCCCCcccCChHHHHHHHHHHhc--cCCeEEEEccccCc--------cchhhhcCCcCCC---C--CC
Q 048597 126 -KIQADIGKKIGLSTKSWQENSFEDKALDIAGILS--RKRFVLLLDDIWEH--------INLNKLGVPLQYL---H--LG 189 (294)
Q Consensus 126 -~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlvlDdv~~~--------~~~~~l~~~l~~~---~--~g 189 (294)
.+...+...++..... ...+...+...+.+.+. +++++|||||++.. ..+..+...+... . ..
T Consensus 101 ~~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQV-RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHTCCCCC-TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 3444555555432211 12234555666666664 67899999999763 2222222222111 1 33
Q ss_pred cEEEEecCChHHh-----------hccCCceeecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCC------C
Q 048597 190 SKIVFTTNSRVVC-----------GQMEATMLNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECC------C 252 (294)
Q Consensus 190 s~iivTtr~~~v~-----------~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~------G 252 (294)
..+|+||+..... ..... .+++.+|+.++++++|...+...... ..--.+....|++.|+ |
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~~~-~i~l~~l~~~e~~~ll~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~G 257 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQIGF-KLHLPAYKSRELYTILEQRAELGLRD-TVWEPRHLELISDVYGEDKGGDG 257 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCSE-EEECCCCCHHHHHHHHHHHHHHHBCT-TSCCHHHHHHHHHHHCGGGTSCC
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhcCC-eeeeCCCCHHHHHHHHHHHHHhcCCC-CCCChHHHHHHHHHHHHhccCCC
Confidence 4577788654422 11211 29999999999999997654211100 1112356788999999 9
Q ss_pred ChHHHHHHHH
Q 048597 253 LPLALKTVGR 262 (294)
Q Consensus 253 lPlai~~i~~ 262 (294)
.|..+..+..
T Consensus 258 ~p~~~~~l~~ 267 (412)
T 1w5s_A 258 SARRAIVALK 267 (412)
T ss_dssp CHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 9976665543
No 8
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.45 E-value=1.5e-12 Score=108.67 Aligned_cols=183 Identities=15% Similarity=0.082 Sum_probs=113.7
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHH--------------HHHHHHHhCCCCCCc-
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKI--------------QADIGKKIGLSTKSW- 142 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i--------------~~~i~~~~~~~~~~~- 142 (294)
..++|++..++.+..++.... ....+.|+|++|+|||||++.+.+.... ...+...........
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEID 101 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEE
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEec
Confidence 468999999999999998752 2358999999999999999988432210 001111000000000
Q ss_pred -ccCChHHHHHHHHHHh-----ccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEecCChHHh-h-cc-CCceee
Q 048597 143 -QENSFEDKALDIAGIL-----SRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTTNSRVVC-G-QM-EATMLN 211 (294)
Q Consensus 143 -~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~-~~-~~~~~~ 211 (294)
...........+.+.+ .+++.+||+||++. ...+..+...+.....+..+|+||+..... . .. ....++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~ 181 (250)
T 1njg_A 102 AASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 181 (250)
T ss_dssp TTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred CcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhcc
Confidence 0001112222333332 34678999999976 345555554444444567888888764321 1 11 123399
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHHHHH
Q 048597 212 ASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVGRAM 264 (294)
Q Consensus 212 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~~L 264 (294)
+.+++.++..+++...+.......+ .+....|++.|+|.|..+..+...+
T Consensus 182 l~~l~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 182 LKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTCCBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999987743321111 3567899999999999998876543
No 9
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.41 E-value=1.3e-11 Score=110.81 Aligned_cols=198 Identities=15% Similarity=0.066 Sum_probs=123.5
Q ss_pred CceeehhHHHHHHHHHHhc--CCCCceEEEEEcCCCChHHHHHHHhhChh----------------------------HH
Q 048597 78 RTVIRQELLLDRVWRFVTD--QERNRGIIGLYGTGGVGKTTLLKQRANLK----------------------------KI 127 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~~GiGKTtLa~~v~~~~----------------------------~i 127 (294)
..++||+.+++++..++.. .....+.+.|+|++|+||||||+.+.+.. .+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 6789999999999988865 23356799999999999999999885321 12
Q ss_pred HHHHHHHh-CCCCCCcccCChHHHHHHHHHHhccCCeEEEEccccCccc---hhh-hcCCcCCCCCCcEEEEecCChHH-
Q 048597 128 QADIGKKI-GLSTKSWQENSFEDKALDIAGILSRKRFVLLLDDIWEHIN---LNK-LGVPLQYLHLGSKIVFTTNSRVV- 201 (294)
Q Consensus 128 ~~~i~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~---~~~-l~~~l~~~~~gs~iivTtr~~~v- 201 (294)
...+...+ +.... ....+.......+...+..++.+|+|||++.... .+. +. .+.....+..+|+||+....
T Consensus 100 ~~~l~~~l~~~~~~-~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~-~l~~~~~~~~iI~~t~~~~~~ 177 (384)
T 2qby_B 100 LSSLAGKLTGFSVP-KHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLY-QLLRSDANISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHHCSCCC-SSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHH-HHHTSSSCEEEEEECSSTTTT
T ss_pred HHHHHHHhcCCCCC-CCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHH-HHhcCCcceEEEEEECCCchH
Confidence 22333333 21111 1223345566777777777777999999976321 222 11 11111156788888886532
Q ss_pred -------hhccCCceeecCCCCHHHHHHHHHHHhCC--CCCCCCCCHHHHHHHHHHhCC---CChHHH-HHHHHH--Hc-
Q 048597 202 -------CGQMEATMLNASPLRDEEAWRLFEEAVGR--YVLDSHPDIPELAKTMAEECC---CLPLAL-KTVGRA--MR- 265 (294)
Q Consensus 202 -------~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~~~~~~I~~~c~---GlPlai-~~i~~~--L~- 265 (294)
....+. .+++.+++.++..++|...+.. .....++ +....|++.|+ |.|..+ ..+-.. +.
T Consensus 178 ~~l~~~l~sr~~~-~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 178 DYMEPRVLSSLGP-SVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TTSCHHHHHTCCC-EEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred hhhCHHHHhcCCC-eEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 222222 5999999999999999987531 1112222 45677888887 988743 333322 22
Q ss_pred --CCCCHHHHHHHHHHHH
Q 048597 266 --SISSIEEWEHAIKIIL 281 (294)
Q Consensus 266 --~~~~~~~w~~~l~~l~ 281 (294)
..-+.+++..+++.+.
T Consensus 254 ~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 254 GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp SSSCCCHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHh
Confidence 2256788888877664
No 10
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.41 E-value=1.6e-12 Score=107.21 Aligned_cols=178 Identities=12% Similarity=0.038 Sum_probs=110.7
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHHHHHHHHHH
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFEDKALDIAGI 157 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (294)
..++|++..++.+..++... ..+.+.|+|++|+|||+||+.+.....-...-...+.+... ...........+...
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 92 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS--DERGIDVVRHKIKEF 92 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT--CTTCHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc--cccChHHHHHHHHHH
Confidence 46899999999999999876 44459999999999999998885421100000000111111 122333344444444
Q ss_pred h------ccCCeEEEEccccCc--cchhhhcCCcCCCCCCcEEEEecCChHHh--hcc-CCceeecCCCCHHHHHHHHHH
Q 048597 158 L------SRKRFVLLLDDIWEH--INLNKLGVPLQYLHLGSKIVFTTNSRVVC--GQM-EATMLNASPLRDEEAWRLFEE 226 (294)
Q Consensus 158 l------~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~v~--~~~-~~~~~~l~~L~~~~~~~Lf~~ 226 (294)
. ..++.+|++||++.. .....+...+.....+.++|+||+..... ... ....+++.+++.++..+++.+
T Consensus 93 ~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~ 172 (226)
T 2chg_A 93 ARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLE 172 (226)
T ss_dssp HTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHH
T ss_pred hcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHH
Confidence 3 257889999999763 33444444443334567888888765321 111 122489999999999999988
Q ss_pred HhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHHH
Q 048597 227 AVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVGR 262 (294)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~ 262 (294)
.+.......+ .+....+++.++|.|..+..+..
T Consensus 173 ~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 173 ICEKEGVKIT---EDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp HHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 7643221111 35668899999999997655443
No 11
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.41 E-value=1.6e-11 Score=110.06 Aligned_cols=201 Identities=18% Similarity=0.089 Sum_probs=122.4
Q ss_pred cCceeehhHHHHHHHHHHhcC--CCCceEEEEEcCCCChHHHHHHHhhChh-------------------------HHHH
Q 048597 77 ERTVIRQELLLDRVWRFVTDQ--ERNRGIIGLYGTGGVGKTTLLKQRANLK-------------------------KIQA 129 (294)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~-------------------------~i~~ 129 (294)
+..++||+.+++.+..++... ......+.|+|++|+||||||+.+.+.. .+..
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 367899999999999998643 3356789999999999999999884321 2344
Q ss_pred HHHHHhCCCCCCcccCChHHHHHHHHHHh--ccCCeEEEEccccCcc----chhhhc---CCcCCC--CCCcEEEEecCC
Q 048597 130 DIGKKIGLSTKSWQENSFEDKALDIAGIL--SRKRFVLLLDDIWEHI----NLNKLG---VPLQYL--HLGSKIVFTTNS 198 (294)
Q Consensus 130 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlvlDdv~~~~----~~~~l~---~~l~~~--~~gs~iivTtr~ 198 (294)
.+...++.... ....+.......+...+ .+++.+|+|||++... ..+.+. ...... ..+..+|+||+.
T Consensus 98 ~l~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 98 AIAEAVGVRVP-FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHSCCCC-SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHhCCCCC-CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 45555543211 12233555566666666 3557899999998632 112221 111111 335577777765
Q ss_pred hH--------HhhccCCceeecCCCCHHHHHHHHHHHhCC--CCCCCCCCHHHHHHHHHHhCC---CChHHHH-HHHHHH
Q 048597 199 RV--------VCGQMEATMLNASPLRDEEAWRLFEEAVGR--YVLDSHPDIPELAKTMAEECC---CLPLALK-TVGRAM 264 (294)
Q Consensus 199 ~~--------v~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~~~~~~I~~~c~---GlPlai~-~i~~~L 264 (294)
.. +...+....+.+.+++.++..+++...+.. .....+++ ....+++.++ |.|..+. .+....
T Consensus 177 ~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 177 LGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPD---VVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp STTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSS---HHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHH---HHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 52 233333334999999999999999887532 11122333 3566777777 9994333 322222
Q ss_pred c-----C--CCCHHHHHHHHHHHH
Q 048597 265 R-----S--ISSIEEWEHAIKIIL 281 (294)
Q Consensus 265 ~-----~--~~~~~~w~~~l~~l~ 281 (294)
. + .-+.++++.++..+.
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHh
Confidence 1 1 235777877776654
No 12
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.38 E-value=1e-11 Score=111.22 Aligned_cols=202 Identities=15% Similarity=0.075 Sum_probs=120.0
Q ss_pred cCceeehhHHHHHHHHHHhcC--CCCceEEEEEcCCCChHHHHHHHhhChh----------------------HHHHHHH
Q 048597 77 ERTVIRQELLLDRVWRFVTDQ--ERNRGIIGLYGTGGVGKTTLLKQRANLK----------------------KIQADIG 132 (294)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~----------------------~i~~~i~ 132 (294)
+..++||+.+++.+.+++... ......+.|+|++|+|||||++.+.+.. .+...+.
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999988752 3356799999999999999999884322 1233333
Q ss_pred HHhCCCCCCcccCChHHHHHHHHHHhc--cCCeEEEEccccCcc------chhhhcCCcCC-CCCCcEEEEecCChHHh-
Q 048597 133 KKIGLSTKSWQENSFEDKALDIAGILS--RKRFVLLLDDIWEHI------NLNKLGVPLQY-LHLGSKIVFTTNSRVVC- 202 (294)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlvlDdv~~~~------~~~~l~~~l~~-~~~gs~iivTtr~~~v~- 202 (294)
..++..... ...+.......+...+. +++.+|+|||++... .+..+...+.. ...+..+|+||+.....
T Consensus 99 ~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~ 177 (386)
T 2qby_A 99 ESLDVKVPF-TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVD 177 (386)
T ss_dssp TTTSCCCCS-SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGG
T ss_pred HHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHh
Confidence 333322111 12234555566666664 458999999997621 22222222211 22345678888765432
Q ss_pred -------hccCCceeecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCC---CChHHHHHHHHHH-c-----C
Q 048597 203 -------GQMEATMLNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECC---CLPLALKTVGRAM-R-----S 266 (294)
Q Consensus 203 -------~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~---GlPlai~~i~~~L-~-----~ 266 (294)
..+....+++.+++.++..+++.+.+.... ....--.+....+++.++ |.|..+..+.... . .
T Consensus 178 ~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~ 256 (386)
T 2qby_A 178 LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF-KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMK 256 (386)
T ss_dssp GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB-CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Confidence 222222499999999999999988653111 011122355677777777 9998544433221 1 1
Q ss_pred --CCCHHHHHHHHHHH
Q 048597 267 --ISSIEEWEHAIKII 280 (294)
Q Consensus 267 --~~~~~~w~~~l~~l 280 (294)
.-+.++++.++..+
T Consensus 257 ~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 257 DTKVKEEYVYMAKEEI 272 (386)
T ss_dssp CSSCCHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHH
Confidence 23556666655544
No 13
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.30 E-value=1.8e-11 Score=107.10 Aligned_cols=177 Identities=14% Similarity=0.118 Sum_probs=109.6
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHHHHHHHHHH
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFEDKALDIAGI 157 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (294)
..++|++..++.+..++..+ ..+.+.++|++|+||||+|+.+.....-...-...+.+... ...........+...
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~ 96 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG--NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS--DDRGIDVVRNQIKHF 96 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT--SCCSHHHHHTHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCc--cccChHHHHHHHHHH
Confidence 46899999999999999876 44449999999999999999885432100000111112111 112334444434433
Q ss_pred h-------ccCCeEEEEccccCc--cchhhhcCCcCCCCCCcEEEEecCChHH-h-hc-cCCceeecCCCCHHHHHHHHH
Q 048597 158 L-------SRKRFVLLLDDIWEH--INLNKLGVPLQYLHLGSKIVFTTNSRVV-C-GQ-MEATMLNASPLRDEEAWRLFE 225 (294)
Q Consensus 158 l-------~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~v-~-~~-~~~~~~~l~~L~~~~~~~Lf~ 225 (294)
. .+++.++|+||++.. ..++.+...+.....++.+|++|+...- . .. -.+..+++.+++.++..+++.
T Consensus 97 ~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~ 176 (323)
T 1sxj_B 97 AQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLL 176 (323)
T ss_dssp HHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHH
T ss_pred HhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHH
Confidence 3 345889999999862 3444444444333446778888765431 1 11 112249999999999999998
Q ss_pred HHhCCCCCCCCCCHHHHHHHHHHhCCCChHH-HHHHH
Q 048597 226 EAVGRYVLDSHPDIPELAKTMAEECCCLPLA-LKTVG 261 (294)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla-i~~i~ 261 (294)
..+.......+ .+....|++.|+|.|.. +..+.
T Consensus 177 ~~~~~~~~~~~---~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 177 QIIKLEDVKYT---NDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp HHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 87643221111 35668899999999955 44443
No 14
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.28 E-value=1e-10 Score=105.00 Aligned_cols=182 Identities=14% Similarity=0.123 Sum_probs=114.7
Q ss_pred CceeehhHHHHHHHHHHhc----CCCCceEEEEEcCCCChHHHHHHHhhC--------------------hhHHHHHHHH
Q 048597 78 RTVIRQELLLDRVWRFVTD----QERNRGIIGLYGTGGVGKTTLLKQRAN--------------------LKKIQADIGK 133 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~~GiGKTtLa~~v~~--------------------~~~i~~~i~~ 133 (294)
+.++||+.+++.+..++.. .....+.+.|+|++|+|||||++.+.+ ...+...+..
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 96 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIAR 96 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHH
Confidence 6789999999999999876 211234899999999999999998821 1234555555
Q ss_pred HhCCCCCCcccCChHHHHHHHHHHhc--cCCeEEEEccccCc--cchhhhcCCcCC-CC---CCcEEEEecCChHHhh--
Q 048597 134 KIGLSTKSWQENSFEDKALDIAGILS--RKRFVLLLDDIWEH--INLNKLGVPLQY-LH---LGSKIVFTTNSRVVCG-- 203 (294)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlvlDdv~~~--~~~~~l~~~l~~-~~---~gs~iivTtr~~~v~~-- 203 (294)
.++..... ...+...+...+...+. +++.+|+|||++.. .....+...+.. .. .+..+|++|+......
T Consensus 97 ~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 97 SLNIPFPR-RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp HTTCCCCS-SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred HhCccCCC-CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 55432211 12345555566666554 56889999999763 333333322221 11 3567888877654322
Q ss_pred ------ccCCceeecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhC---------CCChHHHHHHH
Q 048597 204 ------QMEATMLNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEEC---------CCLPLALKTVG 261 (294)
Q Consensus 204 ------~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c---------~GlPlai~~i~ 261 (294)
.+....+++.+++.++..+++...+...... ..--.+....|++.+ +|.|..+..+.
T Consensus 176 ~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l 247 (389)
T 1fnn_A 176 DPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAE-GSYSEDILQMIADITGAQTPLDTNRGDARLAIDIL 247 (389)
T ss_dssp CHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCT-TSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHH
T ss_pred CHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHH
Confidence 2233249999999999999998876321100 111235678899998 78876555443
No 15
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.16 E-value=1.2e-10 Score=102.02 Aligned_cols=178 Identities=15% Similarity=0.090 Sum_probs=109.7
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHHHHHHHHHH
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFEDKALDIAGI 157 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (294)
..++|++..++.+..++..+ ..+.+.++|++|+||||+|+.+.....-.......+.+.... ..........+...
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 100 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD--ERGINVIREKVKEF 100 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC--HHHHHTTHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc--cCchHHHHHHHHHH
Confidence 45899999999999999876 445599999999999999998854321000000111111110 00011111222222
Q ss_pred h------ccCCeEEEEccccCc--cchhhhcCCcCCCCCCcEEEEecCChHH-----hhccCCceeecCCCCHHHHHHHH
Q 048597 158 L------SRKRFVLLLDDIWEH--INLNKLGVPLQYLHLGSKIVFTTNSRVV-----CGQMEATMLNASPLRDEEAWRLF 224 (294)
Q Consensus 158 l------~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~v-----~~~~~~~~~~l~~L~~~~~~~Lf 224 (294)
. .+++.++++||++.. ..+..+...+.....++++|+||....- ... +..+.+.+++.++...++
T Consensus 101 ~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr--~~~~~~~~l~~~~~~~~l 178 (327)
T 1iqp_A 101 ARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR--CAIFRFRPLRDEDIAKRL 178 (327)
T ss_dssp HHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT--EEEEECCCCCHHHHHHHH
T ss_pred HhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh--CcEEEecCCCHHHHHHHH
Confidence 2 256889999999863 3445554444333446788888866431 111 223899999999999999
Q ss_pred HHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHHHHH
Q 048597 225 EEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVGRAM 264 (294)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~~L 264 (294)
...+.......+ .+....|++.++|.|..+..+...+
T Consensus 179 ~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 179 RYIAENEGLELT---EEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp HHHHHTTTCEEC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCC---HHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 887754332122 3566889999999998766554433
No 16
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.04 E-value=1.7e-09 Score=94.30 Aligned_cols=179 Identities=12% Similarity=0.029 Sum_probs=107.5
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCc-ccCChHHHHHHHHH
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSW-QENSFEDKALDIAG 156 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~-~~~~~~~~~~~l~~ 156 (294)
..++|++..++.+..++..+ ..+.+.++|++|+||||+|+.+.....-...-...+.+..... ...........+..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFAR 94 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHHHh
Confidence 45899999999999888775 4445999999999999999988543100000001111111110 11122222222221
Q ss_pred H--h-ccCCeEEEEccccCc--cchhhhcCCcCCCCCCcEEEEecCChHH-h-hc-cCCceeecCCCCHHHHHHHHHHHh
Q 048597 157 I--L-SRKRFVLLLDDIWEH--INLNKLGVPLQYLHLGSKIVFTTNSRVV-C-GQ-MEATMLNASPLRDEEAWRLFEEAV 228 (294)
Q Consensus 157 ~--l-~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~v-~-~~-~~~~~~~l~~L~~~~~~~Lf~~~~ 228 (294)
. + .+++.++++|+++.. .....+...+.....++++|++|....- . .. -.+..+++.+++.++...++...+
T Consensus 95 ~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~ 174 (319)
T 2chq_A 95 TAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEIC 174 (319)
T ss_dssp SCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHH
T ss_pred cCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHH
Confidence 1 1 256889999999763 3445555555444456778877765431 1 11 112249999999999999998877
Q ss_pred CCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHH
Q 048597 229 GRYVLDSHPDIPELAKTMAEECCCLPLALKTVG 261 (294)
Q Consensus 229 ~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~ 261 (294)
.......+ .+....+++.++|.|..+..+.
T Consensus 175 ~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 175 EKEGVKIT---EDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp HTTCCCBC---HHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 54332222 3556888899999998665543
No 17
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.96 E-value=7.8e-09 Score=92.15 Aligned_cols=177 Identities=16% Similarity=0.120 Sum_probs=105.6
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhH--------------HHHHHHHHh-----CCC
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKK--------------IQADIGKKI-----GLS 138 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~--------------i~~~i~~~~-----~~~ 138 (294)
..++|++..++.+...+..+. ....+.|+|++|+||||+|+.+..... ....+.... .+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEID 94 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEE
T ss_pred hhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEec
Confidence 458999999999999997652 235789999999999999998832110 001111100 000
Q ss_pred CCCcccCChHHHHHHHHHHh-----ccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEecCChHH--hhc-cCCc
Q 048597 139 TKSWQENSFEDKALDIAGIL-----SRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTTNSRVV--CGQ-MEAT 208 (294)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTtr~~~v--~~~-~~~~ 208 (294)
.. ........ ..+.+.+ .+++.++++||++. ...++.+...+.....+..+|++|....- ... ..+.
T Consensus 95 ~~--~~~~~~~~-~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~ 171 (373)
T 1jr3_A 95 AA--SRTKVEDT-RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL 171 (373)
T ss_dssp TT--CSCCSSCH-HHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSE
T ss_pred cc--ccCCHHHH-HHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhhee
Confidence 00 00111111 2233332 35678999999976 33445554444333345667777764321 111 1223
Q ss_pred eeecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHH
Q 048597 209 MLNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVG 261 (294)
Q Consensus 209 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~ 261 (294)
.+++.+++.++...++.+.+.......+ .+....|++.++|.|..+..+.
T Consensus 172 ~i~~~~l~~~~~~~~l~~~~~~~~~~~~---~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 172 QFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHSSSCHHHHHHHH
T ss_pred EeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHCCCCHHHHHHHH
Confidence 3999999999999999876633221111 3556889999999998877654
No 18
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.88 E-value=1.2e-08 Score=90.14 Aligned_cols=175 Identities=11% Similarity=0.037 Sum_probs=104.7
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHH-HhCCCCCCcccCChHHHHHHHHH
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGK-KIGLSTKSWQENSFEDKALDIAG 156 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~-~~~~~~~~~~~~~~~~~~~~l~~ 156 (294)
..++|++..++.+..++..+ ..+.+.|+|++|+||||+|+.+.....-...... ...+... ...........+..
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 112 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSA--NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS--DERGISIVREKVKN 112 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCT--TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS--SCCCHHHHTTHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcC--CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc--cccchHHHHHHHHH
Confidence 45899999999999998876 3344899999999999999988654321111100 0111111 11222222222222
Q ss_pred Hh----------------ccCCeEEEEccccCc--cchhhhcCCcCCCCCCcEEEEecCChH-----HhhccCCceeecC
Q 048597 157 IL----------------SRKRFVLLLDDIWEH--INLNKLGVPLQYLHLGSKIVFTTNSRV-----VCGQMEATMLNAS 213 (294)
Q Consensus 157 ~l----------------~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-----v~~~~~~~~~~l~ 213 (294)
+. ..+.-++++|++... .....+...+.......++|++|.... +... +..+.+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR--~~~i~~~ 190 (353)
T 1sxj_D 113 FARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ--CSKFRFK 190 (353)
T ss_dssp HHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHH--SEEEECC
T ss_pred HhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhcc--CceEEeC
Confidence 21 134569999998752 233344333333333466777765432 1222 1248899
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHH
Q 048597 214 PLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVG 261 (294)
Q Consensus 214 ~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~ 261 (294)
+++.++....+...+.......+ .+....|++.++|.|-.+..+.
T Consensus 191 ~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 191 ALDASNAIDRLRFISEQENVKCD---DGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp CCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHTSSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999887644332222 3567899999999998755443
No 19
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.85 E-value=3e-08 Score=86.67 Aligned_cols=187 Identities=17% Similarity=0.116 Sum_probs=110.5
Q ss_pred CceeehhHHHHHHHHHHhcC---CCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHh-CCCCCCcccCChHHHHHH
Q 048597 78 RTVIRQELLLDRVWRFVTDQ---ERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKI-GLSTKSWQENSFEDKALD 153 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~-~~~~~~~~~~~~~~~~~~ 153 (294)
..++|++..+..+..++... ......+.|+|++|+||||||+.+.+... ..+ ..... ......+
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~------~~~~~~~~~--~~~~~~~---- 79 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG------VNLRVTSGP--AIEKPGD---- 79 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT------CCEEEECTT--TCCSHHH----
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC------CCEEEEecc--ccCChHH----
Confidence 46899999988888887631 22446789999999999999998854211 000 01111 1112222
Q ss_pred HHHHhc---cCCeEEEEccccCcc--chhhhcCCcCCC------------------CCCcEEEEecCChH-H----hhcc
Q 048597 154 IAGILS---RKRFVLLLDDIWEHI--NLNKLGVPLQYL------------------HLGSKIVFTTNSRV-V----CGQM 205 (294)
Q Consensus 154 l~~~l~---~kr~LlvlDdv~~~~--~~~~l~~~l~~~------------------~~gs~iivTtr~~~-v----~~~~ 205 (294)
+...+. .+..+|+|||+.... ....+...+... ..+.++|.+|.... + ...+
T Consensus 80 l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~ 159 (324)
T 1hqc_A 80 LAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRF 159 (324)
T ss_dssp HHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTC
T ss_pred HHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcc
Confidence 333333 366799999997632 222221111100 02345666665432 1 1112
Q ss_pred CCceeecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHHHHHcC--------CCCHHHHHHHH
Q 048597 206 EATMLNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVGRAMRS--------ISSIEEWEHAI 277 (294)
Q Consensus 206 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~~L~~--------~~~~~~w~~~l 277 (294)
...+.+.+++.++...++.+.+.......+ .+....+++.|+|.|-.+..+...+.. .-+.+....++
T Consensus 160 -~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~ 235 (324)
T 1hqc_A 160 -GIVEHLEYYTPEELAQGVMRDARLLGVRIT---EEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEAL 235 (324)
T ss_dssp -SCEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHH
T ss_pred -cEEEecCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 123899999999999999887754332222 356788999999999988877655421 12445555555
Q ss_pred HHH
Q 048597 278 KII 280 (294)
Q Consensus 278 ~~l 280 (294)
..+
T Consensus 236 ~~~ 238 (324)
T 1hqc_A 236 AAL 238 (324)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 20
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.83 E-value=2.5e-08 Score=86.93 Aligned_cols=148 Identities=10% Similarity=0.025 Sum_probs=88.5
Q ss_pred ceeehhHHHHHHHHHHhcC--CCCceEEEEEcCCCChHHHHHHHhhCh--------------------------hHHHHH
Q 048597 79 TVIRQELLLDRVWRFVTDQ--ERNRGIIGLYGTGGVGKTTLLKQRANL--------------------------KKIQAD 130 (294)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~~GiGKTtLa~~v~~~--------------------------~~i~~~ 130 (294)
.+.||++++++|...|... ......+.|+|++|+|||++++.+... ..+...
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 3789999999999888652 346788999999999999999998321 134555
Q ss_pred HHHHhCCCCCCcccCChHHHHHHHHHHh---ccCCeEEEEccccCccchhhhcCCc--CCCCC-CcEEEEecCChH----
Q 048597 131 IGKKIGLSTKSWQENSFEDKALDIAGIL---SRKRFVLLLDDIWEHINLNKLGVPL--QYLHL-GSKIVFTTNSRV---- 200 (294)
Q Consensus 131 i~~~~~~~~~~~~~~~~~~~~~~l~~~l---~~kr~LlvlDdv~~~~~~~~l~~~l--~~~~~-gs~iivTtr~~~---- 200 (294)
+..++..... ....... ....+...+ .++.++++||+++....-+.+...+ +.... ...+|.++...+
T Consensus 101 I~~~L~g~~~-~~~~~~~-~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 101 IWFAISKENL-CGDISLE-ALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIRE 178 (318)
T ss_dssp HHHHHSCCC---CCCCHH-HHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHH
T ss_pred HHHHhcCCCC-CchHHHH-HHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchh
Confidence 6666632111 0112222 233333332 4567899999997643222221111 11111 123333343221
Q ss_pred -----HhhccCCceeecCCCCHHHHHHHHHHHh
Q 048597 201 -----VCGQMEATMLNASPLRDEEAWRLFEEAV 228 (294)
Q Consensus 201 -----v~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 228 (294)
+...++...+.+.|++.++..+++.+++
T Consensus 179 ~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 179 QINIMPSLKAHFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHH
T ss_pred hcchhhhccCCceEEEeCCCCHHHHHHHHHHHH
Confidence 1234443449999999999999999876
No 21
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.82 E-value=7.5e-08 Score=82.65 Aligned_cols=197 Identities=15% Similarity=0.109 Sum_probs=110.0
Q ss_pred CceeehhHHHHHHHHHHhcC-----------CCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccC-
Q 048597 78 RTVIRQELLLDRVWRFVTDQ-----------ERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQEN- 145 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~- 145 (294)
..++|.+..++.|.+.+... -.....+.|+|++|+|||+||+.+.+.... ..+.+........
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~-----~~~~v~~~~~~~~~ 91 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA-----TFIRVVGSELVKKF 91 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC-----EEEEEEGGGGCCCS
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEehHHHHHhc
Confidence 56899999999998887541 124567999999999999999988432100 0000000100111
Q ss_pred --ChHHHHHHHH-HHhccCCeEEEEccccCc----------------cchhhhcCCcC--CCCCCcEEEEecCChHH---
Q 048597 146 --SFEDKALDIA-GILSRKRFVLLLDDIWEH----------------INLNKLGVPLQ--YLHLGSKIVFTTNSRVV--- 201 (294)
Q Consensus 146 --~~~~~~~~l~-~~l~~kr~LlvlDdv~~~----------------~~~~~l~~~l~--~~~~gs~iivTtr~~~v--- 201 (294)
........+. .....+..+|+|||+... ..+..+...+. ....+..||.||.....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~ 171 (285)
T 3h4m_A 92 IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDP 171 (285)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCH
T ss_pred cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCH
Confidence 1112222222 223456689999999652 01111111111 12235567777765432
Q ss_pred --hhccCCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCC-ChHHHHHHHH------HHcCC--CC
Q 048597 202 --CGQMEATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCC-LPLALKTVGR------AMRSI--SS 269 (294)
Q Consensus 202 --~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G-lPlai~~i~~------~L~~~--~~ 269 (294)
........ +.+.+.+.++..++|...+.......... ...+++.+.| .|-.+..+.. ..+.. -+
T Consensus 172 ~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~ 247 (285)
T 3h4m_A 172 AILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVT 247 (285)
T ss_dssp HHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred HHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCC
Confidence 11112233 89999999999999998875543233333 3667777777 4534443322 12221 45
Q ss_pred HHHHHHHHHHHHhc
Q 048597 270 IEEWEHAIKIILRY 283 (294)
Q Consensus 270 ~~~w~~~l~~l~~~ 283 (294)
.++.+.++..+...
T Consensus 248 ~~d~~~al~~~~~~ 261 (285)
T 3h4m_A 248 MDDFRKAVEKIMEK 261 (285)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 67788887777653
No 22
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.79 E-value=4.8e-08 Score=83.43 Aligned_cols=198 Identities=16% Similarity=0.081 Sum_probs=107.7
Q ss_pred CceeehhHHHHHHHH-------HHhc-CCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCC-CCcccCChH
Q 048597 78 RTVIRQELLLDRVWR-------FVTD-QERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLST-KSWQENSFE 148 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~-------~L~~-~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~-~~~~~~~~~ 148 (294)
..++|....++++.. .+.. .......+.|+|++|+|||+||+.+...... ..+.+.. .........
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~-----~~~~i~~~~~~~g~~~~ 107 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNF-----PFIKICSPDKMIGFSET 107 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTC-----SEEEEECGGGCTTCCHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEeCHHHhcCCchH
Confidence 456787766666665 3322 1335678999999999999999988543100 0000000 001111222
Q ss_pred HH----HHHHHHHhccCCeEEEEccccCc-----------cc-hhhhcCCcC---CCCCCcEEEEecCChHHhhc---cC
Q 048597 149 DK----ALDIAGILSRKRFVLLLDDIWEH-----------IN-LNKLGVPLQ---YLHLGSKIVFTTNSRVVCGQ---ME 206 (294)
Q Consensus 149 ~~----~~~l~~~l~~kr~LlvlDdv~~~-----------~~-~~~l~~~l~---~~~~gs~iivTtr~~~v~~~---~~ 206 (294)
.. ...+......+..+|+|||+... .. ...+...+. .......||.||........ ..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~ 187 (272)
T 1d2n_A 108 AKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLN 187 (272)
T ss_dssp HHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhc
Confidence 22 22222233456789999998642 11 122222111 12223446677776643221 11
Q ss_pred C-ce-eecCCCCH-HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCC------ChHHHHHHHHHHcCCCCHHHHHHHH
Q 048597 207 A-TM-LNASPLRD-EEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCC------LPLALKTVGRAMRSISSIEEWEHAI 277 (294)
Q Consensus 207 ~-~~-~~l~~L~~-~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G------lPlai~~i~~~L~~~~~~~~w~~~l 277 (294)
. .. +++.+++. ++...++.+... .+ .+....|++.+.| ++-++..+-... .......++.++
T Consensus 188 rf~~~i~~p~l~~r~~i~~i~~~~~~-----~~---~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~-~~~~~~~~~~~~ 258 (272)
T 1d2n_A 188 AFSTTIHVPNIATGEQLLEALELLGN-----FK---DKERTTIAQQVKGKKVWIGIKKLLMLIEMSL-QMDPEYRVRKFL 258 (272)
T ss_dssp TSSEEEECCCEEEHHHHHHHHHHHTC-----SC---HHHHHHHHHHHTTSEEEECHHHHHHHHHHHT-TSCGGGHHHHHH
T ss_pred ccceEEcCCCccHHHHHHHHHHhcCC-----CC---HHHHHHHHHHhcCCCccccHHHHHHHHHHHh-hhchHHHHHHHH
Confidence 1 23 88999987 666666655321 11 3456788888888 444444443333 334568899999
Q ss_pred HHHHhcCCCCCc
Q 048597 278 KIILRYGRGVFA 289 (294)
Q Consensus 278 ~~l~~~~~~~~~ 289 (294)
..+.+.....++
T Consensus 259 ~~l~~~~~~~~~ 270 (272)
T 1d2n_A 259 ALLREEGASPLD 270 (272)
T ss_dssp HHHHHTSCCSCC
T ss_pred HHHHHcCCcccC
Confidence 988887655544
No 23
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.76 E-value=3.9e-08 Score=87.14 Aligned_cols=179 Identities=10% Similarity=0.101 Sum_probs=99.0
Q ss_pred CceeehhHHHHHHHHHH-hcCCCCceEEEEEcCCCChHHHHHHHhhC-hh-----HHHHH---HH------HHh------
Q 048597 78 RTVIRQELLLDRVWRFV-TDQERNRGIIGLYGTGGVGKTTLLKQRAN-LK-----KIQAD---IG------KKI------ 135 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L-~~~~~~~~vi~I~G~~GiGKTtLa~~v~~-~~-----~i~~~---i~------~~~------ 135 (294)
..++|.+...+.+.+++ ..+ ..+.+.|+|++|+||||+++.+.. .. .+.-. +. ..+
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~--~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR--DLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP 91 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT--CCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECS
T ss_pred HHhcCCHHHHHHHHHHHhhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeeccc
Confidence 45799999999888887 444 333399999999999999998743 10 00000 00 000
Q ss_pred ---CCCCCCcccCChHHHHHHHHHHh--------------ccCCeEEEEccccCc--cchhhhcCCcCCCCCCcEEEEec
Q 048597 136 ---GLSTKSWQENSFEDKALDIAGIL--------------SRKRFVLLLDDIWEH--INLNKLGVPLQYLHLGSKIVFTT 196 (294)
Q Consensus 136 ---~~~~~~~~~~~~~~~~~~l~~~l--------------~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt 196 (294)
..................+.... ..++-+++||++... .....+...+.....++.+|++|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t 171 (354)
T 1sxj_E 92 YHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVC 171 (354)
T ss_dssp SEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEE
T ss_pred ceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 00000000111111222222222 225569999999762 22333333332223356777777
Q ss_pred CChH-Hhh-c-cCCceeecCCCCHHHHHHHHHHHhCCCCCCCC-CCHHHHHHHHHHhCCCChHHHHHHH
Q 048597 197 NSRV-VCG-Q-MEATMLNASPLRDEEAWRLFEEAVGRYVLDSH-PDIPELAKTMAEECCCLPLALKTVG 261 (294)
Q Consensus 197 r~~~-v~~-~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~-~~~~~~~~~I~~~c~GlPlai~~i~ 261 (294)
.... +.. . -.+..+++.+++.++....+.+.+.......+ + +....|++.++|.+-.+..+.
T Consensus 172 ~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 172 DSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETK---DILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp SCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCS---HHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcH---HHHHHHHHHcCCCHHHHHHHH
Confidence 6532 111 1 12233999999999999999877643321222 2 456788899999887665544
No 24
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.74 E-value=6.7e-09 Score=86.54 Aligned_cols=170 Identities=11% Similarity=0.067 Sum_probs=92.7
Q ss_pred ceeeh---hHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHHHHHHHH
Q 048597 79 TVIRQ---ELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFEDKALDIA 155 (294)
Q Consensus 79 ~~vGr---~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~ 155 (294)
.++|. +..++.+..++... ....+.|+|++|+||||||+.+.....-.. .....+........- . ...
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~--~~~~~~~~~~~~~~~-~----~~~ 99 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELE--RRSFYIPLGIHASIS-T----ALL 99 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEGGGGGGSC-G----GGG
T ss_pred hccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEEHHHHHHHH-H----HHH
Confidence 45653 35566666666554 567899999999999999998854221100 000001111000000 0 001
Q ss_pred HHhccCCeEEEEccccCcc--c--hhhhcCCcCC-CCCC-cEEEEecCChH---------HhhccCCce-eecCCCCHHH
Q 048597 156 GILSRKRFVLLLDDIWEHI--N--LNKLGVPLQY-LHLG-SKIVFTTNSRV---------VCGQMEATM-LNASPLRDEE 219 (294)
Q Consensus 156 ~~l~~kr~LlvlDdv~~~~--~--~~~l~~~l~~-~~~g-s~iivTtr~~~---------v~~~~~~~~-~~l~~L~~~~ 219 (294)
+.+ .+..+|++||++... . ...+...+.. ...+ .++|+||+... +...+.... +++.+++.++
T Consensus 100 ~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~ 178 (242)
T 3bos_A 100 EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDE 178 (242)
T ss_dssp TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGG
T ss_pred Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHH
Confidence 111 456799999997631 1 2222222111 0112 24777776322 122221113 9999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHH
Q 048597 220 AWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVG 261 (294)
Q Consensus 220 ~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~ 261 (294)
..+++...+....... -.+....+++.|+|.+-.+..+.
T Consensus 179 ~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 179 KLAALQRRAAMRGLQL---PEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHHHHHHTTCCC---CHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCC---CHHHHHHHHHHccCCHHHHHHHH
Confidence 9999988774322112 23567889999999987766543
No 25
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.74 E-value=9.1e-08 Score=84.24 Aligned_cols=168 Identities=15% Similarity=0.072 Sum_probs=99.3
Q ss_pred CceeehhHHHHHHHHHHhcC---CCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCC---CCcccCChHHHH
Q 048597 78 RTVIRQELLLDRVWRFVTDQ---ERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLST---KSWQENSFEDKA 151 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~---~~~~~~~~~~~~ 151 (294)
..++|++..+..+..++... ......|.|+|++|+|||+||+.+... ++... ............
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~----------~~~~~~~~~~~~~~~~~~~~ 98 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE----------MSANIKTTAAPMIEKSGDLA 98 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH----------TTCCEEEEEGGGCCSHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH----------hCCCeEEecchhccchhHHH
Confidence 46899999999998888752 335567899999999999999887322 11110 000111222222
Q ss_pred HHHHHHhccCCeEEEEccccCc--cchhhhcCCcCCC------------------CCCcEEEEecCChH-----HhhccC
Q 048597 152 LDIAGILSRKRFVLLLDDIWEH--INLNKLGVPLQYL------------------HLGSKIVFTTNSRV-----VCGQME 206 (294)
Q Consensus 152 ~~l~~~l~~kr~LlvlDdv~~~--~~~~~l~~~l~~~------------------~~gs~iivTtr~~~-----v~~~~~ 206 (294)
..+.. ..+..+|+||++... .....+...+... ..+..+|.+|.... ....+
T Consensus 99 ~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~- 175 (338)
T 3pfi_A 99 AILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRF- 175 (338)
T ss_dssp HHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTC-
T ss_pred HHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhc-
Confidence 22221 246689999999863 2222221111110 11245666665432 22222
Q ss_pred CceeecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHH
Q 048597 207 ATMLNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVG 261 (294)
Q Consensus 207 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~ 261 (294)
...+++.+++.++...++.+.+....... -.+....|++.+.|.|-.+..+.
T Consensus 176 ~~~i~l~~~~~~e~~~il~~~~~~~~~~~---~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 176 GMQFRLEFYKDSELALILQKAALKLNKTC---EEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHTTCEE---CHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CEEeeCCCcCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHCcCHHHHHHHH
Confidence 12399999999999999987764322111 13566888999999996555443
No 26
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.72 E-value=2.9e-09 Score=85.31 Aligned_cols=44 Identities=25% Similarity=0.354 Sum_probs=37.9
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhC
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
..++|++..++++.+.+... ....+.|+|++|+||||||+.+..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHH
Confidence 45799999999999998875 556789999999999999988744
No 27
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.72 E-value=1.5e-07 Score=86.05 Aligned_cols=187 Identities=16% Similarity=0.119 Sum_probs=103.9
Q ss_pred ee-ehhH--HHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChh---------------HHHHHHHHHhCCCCCC
Q 048597 80 VI-RQEL--LLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLK---------------KIQADIGKKIGLSTKS 141 (294)
Q Consensus 80 ~v-Gr~~--~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~---------------~i~~~i~~~~~~~~~~ 141 (294)
|+ |... ....+........ ....+.|+|++|+||||||+.+.+.. .+...+...+..
T Consensus 107 fv~g~~n~~a~~~~~~~a~~~~-~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~---- 181 (440)
T 2z4s_A 107 FVVGPGNSFAYHAALEVAKHPG-RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKE---- 181 (440)
T ss_dssp CCCCTTTHHHHHHHHHHHHSTT-SSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHT----
T ss_pred cCCCCchHHHHHHHHHHHhCCC-CCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHc----
Confidence 44 6443 3334444444332 26789999999999999999885422 111111111100
Q ss_pred cccCChHHHHHHHHHHhccCCeEEEEccccCcc----chhhhcCCcCC-CCCCcEEEEecCCh---------HHhhccCC
Q 048597 142 WQENSFEDKALDIAGILSRKRFVLLLDDIWEHI----NLNKLGVPLQY-LHLGSKIVFTTNSR---------VVCGQMEA 207 (294)
Q Consensus 142 ~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~----~~~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~ 207 (294)
.. ...+...+..+..+|+|||++... ..+.+...+.. ...|..||+||.+. .+...+..
T Consensus 182 ---~~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~ 254 (440)
T 2z4s_A 182 ---GK----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQM 254 (440)
T ss_dssp ---TC----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHS
T ss_pred ---cc----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccC
Confidence 00 112223333367899999997632 22233222211 23467888888752 22333333
Q ss_pred ce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHHHH------HcCC-CCHHHHHHHHHH
Q 048597 208 TM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVGRA------MRSI-SSIEEWEHAIKI 279 (294)
Q Consensus 208 ~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~~------L~~~-~~~~~w~~~l~~ 279 (294)
.. +.+.+++.++...++.+.+.......++ ++...|++.++|.+-.+..+... +.++ -+.+.++.++..
T Consensus 255 g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~ 331 (440)
T 2z4s_A 255 GLVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKD 331 (440)
T ss_dssp SBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTST
T ss_pred CeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 33 8899999999999998877432222333 34678889999988655433221 1222 456777776654
Q ss_pred HH
Q 048597 280 IL 281 (294)
Q Consensus 280 l~ 281 (294)
+.
T Consensus 332 ~~ 333 (440)
T 2z4s_A 332 FI 333 (440)
T ss_dssp TT
T ss_pred Hh
Confidence 43
No 28
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=98.72 E-value=7.3e-09 Score=76.70 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=34.4
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHHHHHHHHhhhchhhhhhh
Q 048597 2 AAEQQPRTRRTVRVKLWFKRVDNKVTEVAKLKQEGDLQIDR 42 (294)
Q Consensus 2 dae~~~~~~~~~~v~~Wl~~l~~~~~d~ed~ld~~~~~~~~ 42 (294)
|||+++....++.++.|+++||+++||+|||||+|.++...
T Consensus 44 da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~~ 84 (115)
T 3qfl_A 44 KIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQVDG 84 (115)
T ss_dssp HHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56766311468999999999999999999999999998764
No 29
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.65 E-value=9.4e-08 Score=87.47 Aligned_cols=172 Identities=16% Similarity=0.106 Sum_probs=97.8
Q ss_pred CceeehhHHH---HHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHHHHHHH
Q 048597 78 RTVIRQELLL---DRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFEDKALDI 154 (294)
Q Consensus 78 ~~~vGr~~~~---~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l 154 (294)
..++|.+..+ ..+...+..+ ..+.+.|+|++|+||||||+.+.+.... ....+.. ...........+
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~-----~f~~l~a---~~~~~~~ir~~~ 95 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANA-----DVERISA---VTSGVKEIREAI 95 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTC-----EEEEEET---TTCCHHHHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCC-----CeEEEEe---ccCCHHHHHHHH
Confidence 4579998888 7788888777 5678999999999999999988432210 0000000 112222222222
Q ss_pred HH----HhccCCeEEEEccccCc--cchhhhcCCcCCCCCCcEEEE-ecCChHH---hhcc-CCceeecCCCCHHHHHHH
Q 048597 155 AG----ILSRKRFVLLLDDIWEH--INLNKLGVPLQYLHLGSKIVF-TTNSRVV---CGQM-EATMLNASPLRDEEAWRL 223 (294)
Q Consensus 155 ~~----~l~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iiv-Ttr~~~v---~~~~-~~~~~~l~~L~~~~~~~L 223 (294)
.. ...+++.+|+||+++.. ...+.+...+..+ ...+|. ||.+... .... ....+.+.+++.++...+
T Consensus 96 ~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~i 173 (447)
T 3pvs_A 96 ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQV 173 (447)
T ss_dssp HHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHH
T ss_pred HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHH
Confidence 21 12467889999999763 2333333333321 233443 4444321 1111 122388999999999999
Q ss_pred HHHHhCCCCC----CCCCCHHHHHHHHHHhCCCChHHHHHHH
Q 048597 224 FEEAVGRYVL----DSHPDIPELAKTMAEECCCLPLALKTVG 261 (294)
Q Consensus 224 f~~~~~~~~~----~~~~~~~~~~~~I~~~c~GlPlai~~i~ 261 (294)
+.+.+..... ....--.+....+++.++|.+-.+..+.
T Consensus 174 l~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 174 LTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp HHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 9887643110 0011123566788888999886655443
No 30
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.65 E-value=2.9e-07 Score=81.24 Aligned_cols=175 Identities=17% Similarity=0.144 Sum_probs=99.5
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHHHHHHHHHH
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFEDKALDIAGI 157 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (294)
..++|.+..++.|..++..+ ..+.+.++|++|+||||+|+.+.....-...-...+..... ...........+..+
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~--~~~~~~~ir~~i~~~ 100 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNAS--DDRGIDVVRNQIKDF 100 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTT--SCCSHHHHHTHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCc--ccccHHHHHHHHHHH
Confidence 45789988899888888876 44448999999999999999884432100000011111111 112233333333333
Q ss_pred h------ccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEecCChH-Hhh--ccCCceeecCCCCHHHHHHHHHH
Q 048597 158 L------SRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTTNSRV-VCG--QMEATMLNASPLRDEEAWRLFEE 226 (294)
Q Consensus 158 l------~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~--~~~~~~~~l~~L~~~~~~~Lf~~ 226 (294)
. .+.+-++++|+++. ....+.+...+......++++++|.... +.. .-.+..+.+.+++.++..+.+.+
T Consensus 101 ~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~ 180 (340)
T 1sxj_C 101 ASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIAN 180 (340)
T ss_dssp HHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHH
T ss_pred HhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHH
Confidence 2 13467899999965 2333344333322233456777665432 110 11122488999999998888877
Q ss_pred HhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHH
Q 048597 227 AVGRYVLDSHPDIPELAKTMAEECCCLPLALKT 259 (294)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 259 (294)
.+.......+ .+..+.|++.++|.+--+..
T Consensus 181 ~~~~~~~~i~---~~~~~~i~~~s~G~~r~~~~ 210 (340)
T 1sxj_C 181 VLVHEKLKLS---PNAEKALIELSNGDMRRVLN 210 (340)
T ss_dssp HHHTTTCCBC---HHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 6633221111 24567788888887765433
No 31
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.63 E-value=5.4e-07 Score=80.11 Aligned_cols=44 Identities=16% Similarity=0.190 Sum_probs=34.2
Q ss_pred CceeehhHHHHH---HHHHHhcCCCCceEEEEEcCCCChHHHHHHHh
Q 048597 78 RTVIRQELLLDR---VWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 78 ~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
..++|++..++. +...+..+....+.+.|+|++|+|||+||+.+
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~l 90 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGM 90 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHH
Confidence 468999988665 45555555333468999999999999999998
No 32
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.61 E-value=1.7e-07 Score=87.44 Aligned_cols=172 Identities=13% Similarity=0.096 Sum_probs=96.0
Q ss_pred CceeehhHHHHHHHHHHhcCC---------------CCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCc
Q 048597 78 RTVIRQELLLDRVWRFVTDQE---------------RNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSW 142 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~---------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~ 142 (294)
..++|++..++.+.+++.... ...+.+.|+|++|+||||||+.+.+.... ..+.+...
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~-----~~i~in~s-- 111 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY-----DILEQNAS-- 111 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC-----EEEEECTT--
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC-----CEEEEeCC--
Confidence 468999999999999997510 13478999999999999999988322100 00000000
Q ss_pred ccCChHHHHHHHHH------------------HhccCCeEEEEccccCcc-----chhhhcCCcCCCCCCcEEEEecCCh
Q 048597 143 QENSFEDKALDIAG------------------ILSRKRFVLLLDDIWEHI-----NLNKLGVPLQYLHLGSKIVFTTNSR 199 (294)
Q Consensus 143 ~~~~~~~~~~~l~~------------------~l~~kr~LlvlDdv~~~~-----~~~~l~~~l~~~~~gs~iivTtr~~ 199 (294)
...........+.. ...+++.+|++|++.... .+..+...+... +..+|+++...
T Consensus 112 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 112 DVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp SCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 00000000000000 013567899999997631 123332222221 23455555432
Q ss_pred H---HhhccCCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCCh-HHHHHHH
Q 048597 200 V---VCGQMEATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLP-LALKTVG 261 (294)
Q Consensus 200 ~---v~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-lai~~i~ 261 (294)
. +........ +.+.+++.++..+++...+.......++ +....|++.|+|.+ -++..+.
T Consensus 190 ~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 190 NLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp TSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHHT
T ss_pred CCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHHH
Confidence 2 222222223 9999999999999988766433322333 34678899999944 4555443
No 33
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.61 E-value=7.3e-07 Score=75.29 Aligned_cols=177 Identities=17% Similarity=0.101 Sum_probs=93.6
Q ss_pred CceeehhHHHHHHHHHHh---cCC-------CCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCc----c
Q 048597 78 RTVIRQELLLDRVWRFVT---DQE-------RNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSW----Q 143 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~----~ 143 (294)
..++|.+..++.+.+++. ... ...+.+.|+|++|+|||+||+.+.+.... ..+.+..... .
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~-----~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV-----PFLAMAGAEFVEVIG 80 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC-----CEEEEETTTTSSSST
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEechHHHHhhcc
Confidence 457898887777766543 211 24467889999999999999988542110 0000111110 0
Q ss_pred cCChHHHHHHHHHHhccCCeEEEEccccCcc-----------------chhhhcCCcCC--CCCCcEEEEecCChHHh--
Q 048597 144 ENSFEDKALDIAGILSRKRFVLLLDDIWEHI-----------------NLNKLGVPLQY--LHLGSKIVFTTNSRVVC-- 202 (294)
Q Consensus 144 ~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~-----------------~~~~l~~~l~~--~~~gs~iivTtr~~~v~-- 202 (294)
......+...+.........+|+|||++... .+..+...+.. ...+..+|.||......
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~ 160 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDG 160 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGS
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCH
Confidence 1111122222233334557899999997530 11112111111 12345666666554321
Q ss_pred hcc---CCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChH-HHHHHH
Q 048597 203 GQM---EATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPL-ALKTVG 261 (294)
Q Consensus 203 ~~~---~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~~i~ 261 (294)
... .... +.+.+.+.++-.+++...+..... ..........+++.+.|.+- .+..+.
T Consensus 161 ~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~--~~~~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 161 ALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL--TQSSTFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp GGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC--CBTHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred HHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC--CcchhhHHHHHHHHCCCCCHHHHHHHH
Confidence 111 2223 889999999999999877643221 12222234789999999764 554444
No 34
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.59 E-value=1.1e-06 Score=76.90 Aligned_cols=171 Identities=18% Similarity=0.097 Sum_probs=97.4
Q ss_pred CceeehhHHHHHHHHHHhc----------CCCCceEEEEEcCCCChHHHHHHHhhChhH-----HH-HHHHHHhCCCCCC
Q 048597 78 RTVIRQELLLDRVWRFVTD----------QERNRGIIGLYGTGGVGKTTLLKQRANLKK-----IQ-ADIGKKIGLSTKS 141 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-----i~-~~i~~~~~~~~~~ 141 (294)
..++|.+..++.|.+.+.. .....+-+.++|++|+|||+||+.+.+... +. ..+.. .
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~-------~ 90 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS-------K 90 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT-------T
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh-------c
Confidence 4689999999999888731 112346799999999999999999843211 00 00000 0
Q ss_pred cccCChHHHHHHHHHHh-ccCCeEEEEccccCccc-------------hhhhcCC---cCCCCCCcEEEEecCChHH---
Q 048597 142 WQENSFEDKALDIAGIL-SRKRFVLLLDDIWEHIN-------------LNKLGVP---LQYLHLGSKIVFTTNSRVV--- 201 (294)
Q Consensus 142 ~~~~~~~~~~~~l~~~l-~~kr~LlvlDdv~~~~~-------------~~~l~~~---l~~~~~gs~iivTtr~~~v--- 201 (294)
... ........+.... ..+..+|+||++..... ...+... +.....+..||.||.....
T Consensus 91 ~~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~ 169 (322)
T 3eie_A 91 WMG-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDS 169 (322)
T ss_dssp TGG-GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCH
T ss_pred ccc-hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCH
Confidence 001 1122222333322 45668999999975211 1222111 1122334566667765322
Q ss_pred --hhccCCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCC-hHHHHHHH
Q 048597 202 --CGQMEATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCL-PLALKTVG 261 (294)
Q Consensus 202 --~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl-Plai~~i~ 261 (294)
.. .... +.+...+.++-.++|...+....... -......|++.+.|. +-.|..+.
T Consensus 170 al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 170 AIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVL---TKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp HHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCC---CHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred HHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 22 2223 78888999999999998876432111 124557899999884 44444443
No 35
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.58 E-value=6.6e-07 Score=79.52 Aligned_cols=177 Identities=14% Similarity=0.056 Sum_probs=97.2
Q ss_pred CceeehhHHHHHHHHHHhc----------CCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccC--
Q 048597 78 RTVIRQELLLDRVWRFVTD----------QERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQEN-- 145 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~-- 145 (294)
..++|.+..++.|.+.+.. .....+.|.|+|++|+|||+||+.+...... ..+.+........
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~i~~~~l~~~~~ 158 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA-----TFFSISASSLTSKWV 158 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC-----EEEEEEGGGGCCSST
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC-----eEEEEehHHhhcccc
Confidence 4589999999998888753 1124578999999999999999988432100 0000111110111
Q ss_pred -ChHHHHHHHHHHh-ccCCeEEEEccccCcc-------------chhhhcCCcC----CCCCCcEEEEecCChHH---hh
Q 048597 146 -SFEDKALDIAGIL-SRKRFVLLLDDIWEHI-------------NLNKLGVPLQ----YLHLGSKIVFTTNSRVV---CG 203 (294)
Q Consensus 146 -~~~~~~~~l~~~l-~~kr~LlvlDdv~~~~-------------~~~~l~~~l~----~~~~gs~iivTtr~~~v---~~ 203 (294)
........+.... ..+..+|+||++.... ....+...+. ....+..||.||..... +-
T Consensus 159 g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l 238 (357)
T 3d8b_A 159 GEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAA 238 (357)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHH
T ss_pred chHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHH
Confidence 1122222233222 3567899999995420 1112211111 11224455666654321 11
Q ss_pred ccCCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCC-ChHHHHHHHH
Q 048597 204 QMEATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCC-LPLALKTVGR 262 (294)
Q Consensus 204 ~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G-lPlai~~i~~ 262 (294)
.-.... +.+...+.++..+++...+....... -......|++.+.| .|-.+..+..
T Consensus 239 ~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l---~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 239 RRRLVKRLYIPLPEASARKQIVINLMSKEQCCL---SEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp HTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc---cHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 112233 78888999999898887764322111 13556889999999 4555555543
No 36
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.57 E-value=7.6e-07 Score=78.00 Aligned_cols=174 Identities=14% Similarity=0.092 Sum_probs=97.4
Q ss_pred CceeehhHHHHHHHHHHhc----------CCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCC----cc
Q 048597 78 RTVIRQELLLDRVWRFVTD----------QERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKS----WQ 143 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~----~~ 143 (294)
..++|.+..++.|.+.+.. .....+.|.|+|++|+|||+||+.+.+... . ...+.+.... ..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~--~~~~~i~~~~l~~~~~ 87 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--N--STFFSISSSDLVSKWL 87 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--S--CEEEEEECCSSCCSSC
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC--C--CcEEEEEhHHHHhhhh
Confidence 4678999888888777632 112347899999999999999998854220 0 0000011111 11
Q ss_pred cCChHHHHHHHHHHh-ccCCeEEEEccccCcc---------ch----hhhcCCc---CCCCCCcEEEEecCChH-----H
Q 048597 144 ENSFEDKALDIAGIL-SRKRFVLLLDDIWEHI---------NL----NKLGVPL---QYLHLGSKIVFTTNSRV-----V 201 (294)
Q Consensus 144 ~~~~~~~~~~l~~~l-~~kr~LlvlDdv~~~~---------~~----~~l~~~l---~~~~~gs~iivTtr~~~-----v 201 (294)
... ......+.... ..+..+|+||++.... .. ..+...+ .....+..||.||.... +
T Consensus 88 g~~-~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al 166 (322)
T 1xwi_A 88 GES-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAI 166 (322)
T ss_dssp CSC-HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHH
T ss_pred hHH-HHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHH
Confidence 122 23333333333 4677899999997531 00 1111111 11223445565665432 2
Q ss_pred hhccCCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCC-hHHHHHHH
Q 048597 202 CGQMEATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCL-PLALKTVG 261 (294)
Q Consensus 202 ~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl-Plai~~i~ 261 (294)
.. .... +.+...+.++-.++|...+....... -......|++.+.|. +-.+..+.
T Consensus 167 ~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 167 RR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSL---TEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp HH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCC---CHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred Hh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 22 3334 88888999999999988775432111 124568899999997 44455444
No 37
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.56 E-value=2.8e-06 Score=75.44 Aligned_cols=170 Identities=18% Similarity=0.113 Sum_probs=95.5
Q ss_pred CceeehhHHHHHHHHHHhcC----------CCCceEEEEEcCCCChHHHHHHHhhChhH-----H-HHHHHHHhCCCCCC
Q 048597 78 RTVIRQELLLDRVWRFVTDQ----------ERNRGIIGLYGTGGVGKTTLLKQRANLKK-----I-QADIGKKIGLSTKS 141 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-----i-~~~i~~~~~~~~~~ 141 (294)
..++|.+..++.|...+... ....+-|.|+|++|+|||+||+.+.+... + ...+...
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~------- 123 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK------- 123 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC-------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh-------
Confidence 45899999999888877321 12345689999999999999999843221 0 0011000
Q ss_pred cccCChHHHHHHHHHH-hccCCeEEEEccccCccc-------------hhhhcCCc---CCCCCCcEEEEecCChH----
Q 048597 142 WQENSFEDKALDIAGI-LSRKRFVLLLDDIWEHIN-------------LNKLGVPL---QYLHLGSKIVFTTNSRV---- 200 (294)
Q Consensus 142 ~~~~~~~~~~~~l~~~-l~~kr~LlvlDdv~~~~~-------------~~~l~~~l---~~~~~gs~iivTtr~~~---- 200 (294)
+..... .....+... -..+..+|+||++..... ...+...+ .....+..||.||....
T Consensus 124 ~~g~~~-~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~ 202 (355)
T 2qp9_X 124 WMGESE-KLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDS 202 (355)
T ss_dssp C---CH-HHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCH
T ss_pred hcchHH-HHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCH
Confidence 011122 222233332 245788999999975210 11221111 11223455666665442
Q ss_pred -HhhccCCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCC-hHHHHHH
Q 048597 201 -VCGQMEATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCL-PLALKTV 260 (294)
Q Consensus 201 -v~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl-Plai~~i 260 (294)
+.. .... +.+...+.++-.++|...+........ ......|++.+.|. |-.|..+
T Consensus 203 al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~---~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 203 AIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLT---KEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp HHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC---HHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHcCCCCHHHHHHH
Confidence 222 3334 888999999999999887754321111 24457899999984 4344443
No 38
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.55 E-value=9.7e-08 Score=82.90 Aligned_cols=151 Identities=14% Similarity=0.137 Sum_probs=82.5
Q ss_pred ceeehhHHHHHHHHHHhcC-------------CCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHH--HHhCCCCCCcc
Q 048597 79 TVIRQELLLDRVWRFVTDQ-------------ERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIG--KKIGLSTKSWQ 143 (294)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~--~~~~~~~~~~~ 143 (294)
.++|.+..++.+.+++... ......+.|+|++|+|||+||+.+.+...-..... ..+.+......
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 5799998888887766421 23455799999999999999987743221100000 00000001000
Q ss_pred cCChHHHHHHHHHHh-ccCCeEEEEccccCc-----------cchhhhcCCcCCCCCCcEEEEecCChHH----------
Q 048597 144 ENSFEDKALDIAGIL-SRKRFVLLLDDIWEH-----------INLNKLGVPLQYLHLGSKIVFTTNSRVV---------- 201 (294)
Q Consensus 144 ~~~~~~~~~~l~~~l-~~kr~LlvlDdv~~~-----------~~~~~l~~~l~~~~~gs~iivTtr~~~v---------- 201 (294)
..-.......+...+ ..+..+|+||++... .....+...+.....+..+|+||.....
T Consensus 112 ~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l 191 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGF 191 (309)
T ss_dssp CSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTH
T ss_pred hhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHH
Confidence 000000111122222 124569999999732 2233443333334445677888764321
Q ss_pred hhccCCceeecCCCCHHHHHHHHHHHhCC
Q 048597 202 CGQMEATMLNASPLRDEEAWRLFEEAVGR 230 (294)
Q Consensus 202 ~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 230 (294)
...+. ..+++.+++.++...++...+..
T Consensus 192 ~~R~~-~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 192 RSRIA-HHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp HHHEE-EEEEECCCCHHHHHHHHHHHHHH
T ss_pred HHhCC-eEEEcCCcCHHHHHHHHHHHHHH
Confidence 22221 22999999999999999887643
No 39
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.53 E-value=2.7e-07 Score=80.72 Aligned_cols=171 Identities=11% Similarity=0.036 Sum_probs=98.8
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHHHHHHHHHH
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFEDKALDIAGI 157 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (294)
..++|.+..+..+..++..+. ...++.+.|++|+||||+|+.+.+... ...+.+.. ...........+.+.
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~---~~~~~~~i~~~~~~~ 96 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNG---SDCKIDFVRGPLTNF 96 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTT-----EEEEEEET---TTCCHHHHHTHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEcc---cccCHHHHHHHHHHH
Confidence 568999999999999998652 346788889999999999988843210 00011111 112234444444443
Q ss_pred hc-----cCCeEEEEccccCcc---chhhhcCCcCCCCCCcEEEEecCChH-----HhhccCCceeecCCCCHHHHHHHH
Q 048597 158 LS-----RKRFVLLLDDIWEHI---NLNKLGVPLQYLHLGSKIVFTTNSRV-----VCGQMEATMLNASPLRDEEAWRLF 224 (294)
Q Consensus 158 l~-----~kr~LlvlDdv~~~~---~~~~l~~~l~~~~~gs~iivTtr~~~-----v~~~~~~~~~~l~~L~~~~~~~Lf 224 (294)
.. ++..++++||++... ..+.+...+.....+.++|+||.... +...+ ..+++.+++.++-.+++
T Consensus 97 ~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~--~~i~~~~~~~~e~~~il 174 (324)
T 3u61_B 97 ASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC--RVITFGQPTDEDKIEMM 174 (324)
T ss_dssp HHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS--EEEECCCCCHHHHHHHH
T ss_pred HhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC--cEEEeCCCCHHHHHHHH
Confidence 32 367899999997643 33333333322223467888876543 12222 23899999988743332
Q ss_pred -------HHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHH
Q 048597 225 -------EEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVG 261 (294)
Q Consensus 225 -------~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~ 261 (294)
...+.......++ .+....|++.++|.+-.+....
T Consensus 175 ~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~~~L 216 (324)
T 3u61_B 175 KQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTIGEL 216 (324)
T ss_dssp HHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHHHHH
Confidence 2222222211111 2566889999998776544433
No 40
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.52 E-value=5.7e-06 Score=71.63 Aligned_cols=164 Identities=15% Similarity=0.081 Sum_probs=93.8
Q ss_pred CceeehhHHHHHHHHHHhcC-----------CCCceEEEEEcCCCChHHHHHHHhhChh----------HHHHHHHHHhC
Q 048597 78 RTVIRQELLLDRVWRFVTDQ-----------ERNRGIIGLYGTGGVGKTTLLKQRANLK----------KIQADIGKKIG 136 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~----------~i~~~i~~~~~ 136 (294)
..++|.+..++.|.+++... -.....|.|+|++|+||||||+.+.+.. .+.. ..++
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~---~~~g 91 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT---MWFG 91 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH---HHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh---hhcC
Confidence 45889998888888776531 1245789999999999999999984321 1111 1111
Q ss_pred CCCCCcccCChHHHHHHHHHHhccCCeEEEEccccCcc----------------chhhhcCCcC--CCCCCcEEEEecCC
Q 048597 137 LSTKSWQENSFEDKALDIAGILSRKRFVLLLDDIWEHI----------------NLNKLGVPLQ--YLHLGSKIVFTTNS 198 (294)
Q Consensus 137 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~----------------~~~~l~~~l~--~~~~gs~iivTtr~ 198 (294)
. ........+.........+|++|++.... ....+...+. ....+..||.||..
T Consensus 92 ~--------~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~ 163 (301)
T 3cf0_A 92 E--------SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNR 163 (301)
T ss_dssp T--------CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESC
T ss_pred c--------hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCC
Confidence 1 11122222333334567899999997411 0122211111 12234567777765
Q ss_pred hHHh-h-cc---CCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHH
Q 048597 199 RVVC-G-QM---EATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLA 256 (294)
Q Consensus 199 ~~v~-~-~~---~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla 256 (294)
.... . .. .... +.+...+.++-.+++...+.........++ ..+++.+.|.|-+
T Consensus 164 ~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 164 PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp GGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred ccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 4321 1 11 2333 889999999999998877754332222333 4566678887643
No 41
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.50 E-value=1.6e-06 Score=75.76 Aligned_cols=153 Identities=15% Similarity=0.217 Sum_probs=84.4
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChh-------------HHHHHHHHHhCCCCCCcccCChHHHHHH
Q 048597 87 LDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLK-------------KIQADIGKKIGLSTKSWQENSFEDKALD 153 (294)
Q Consensus 87 ~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~-------------~i~~~i~~~~~~~~~~~~~~~~~~~~~~ 153 (294)
...+..++.........+.|+|++|+||||||+.+.+.. .+...+...+. .... ..
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------~~~~----~~ 91 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLK-------KGTI----NE 91 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHH-------HTCH----HH
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHH-------cCcH----HH
Confidence 344445444443345789999999999999999885422 11111111110 0000 11
Q ss_pred HHHHhccCCeEEEEccccCcc---c-hhhhcCCcCC-CCCCcEEEEecCChH---------HhhccCCce-eecCCCCHH
Q 048597 154 IAGILSRKRFVLLLDDIWEHI---N-LNKLGVPLQY-LHLGSKIVFTTNSRV---------VCGQMEATM-LNASPLRDE 218 (294)
Q Consensus 154 l~~~l~~kr~LlvlDdv~~~~---~-~~~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~~-~~l~~L~~~ 218 (294)
+...+ .+..+|+|||+.... . ...+...+.. ...|..+|+||.+.. +...+.... +++.+ +.+
T Consensus 92 ~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~ 169 (324)
T 1l8q_A 92 FRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNK 169 (324)
T ss_dssp HHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHH
T ss_pred HHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHH
Confidence 12222 246799999997632 1 2223222211 123557888776431 222333323 89999 999
Q ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHH
Q 048597 219 EAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLA 256 (294)
Q Consensus 219 ~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla 256 (294)
+...++...+.......+ .+....|++.+ |.+-.
T Consensus 170 e~~~il~~~~~~~~~~l~---~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 170 TRFKIIKEKLKEFNLELR---KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHHHHHHHHTTCCCC---HHHHHHHHHHC-SSHHH
T ss_pred HHHHHHHHHHHhcCCCCC---HHHHHHHHHhC-CCHHH
Confidence 999999887743222222 35667888888 76643
No 42
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.46 E-value=3.9e-06 Score=75.35 Aligned_cols=177 Identities=14% Similarity=0.045 Sum_probs=96.3
Q ss_pred CceeehhHHHHHHHHHHhcC----------CCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCccc---
Q 048597 78 RTVIRQELLLDRVWRFVTDQ----------ERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQE--- 144 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~--- 144 (294)
..++|.+..+..|..++... ....+.|.|+|++|+|||+||+.+...... ..+.+.......
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~-----~~~~v~~~~l~~~~~ 189 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA-----TFFNISAASLTSKYV 189 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEECSCCC-----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC-----cEEEeeHHHhhcccc
Confidence 46899999999998887321 113478999999999999999988332100 000111111110
Q ss_pred CChHHHHHHHHHHh-ccCCeEEEEccccCcc-------------chhhhcCCc---CC-CCCCcEEEEecCChHH---hh
Q 048597 145 NSFEDKALDIAGIL-SRKRFVLLLDDIWEHI-------------NLNKLGVPL---QY-LHLGSKIVFTTNSRVV---CG 203 (294)
Q Consensus 145 ~~~~~~~~~l~~~l-~~kr~LlvlDdv~~~~-------------~~~~l~~~l---~~-~~~gs~iivTtr~~~v---~~ 203 (294)
.........+.... .....+|+||+++... ....+...+ .. ......||.||..... +-
T Consensus 190 g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l 269 (389)
T 3vfd_A 190 GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAV 269 (389)
T ss_dssp --CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHH
T ss_pred chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHH
Confidence 01122222333322 3456899999996420 011111111 11 1223455656654221 11
Q ss_pred ccCCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChH-HHHHHHH
Q 048597 204 QMEATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPL-ALKTVGR 262 (294)
Q Consensus 204 ~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~~i~~ 262 (294)
.-.... +.+...+.++..+++...+...... -..+....|++.+.|..- ++..+..
T Consensus 270 ~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~---l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 270 LRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP---LTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp HTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC---SCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 112333 8888899999999998877543311 123456889999998654 5555443
No 43
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.40 E-value=5.9e-06 Score=76.38 Aligned_cols=172 Identities=15% Similarity=0.072 Sum_probs=97.1
Q ss_pred CceeehhHHHHHHHHHHhcC-----------CCCceEEEEEcCCCChHHHHHHHhhChhH-----H-HHHHHHHhCCCCC
Q 048597 78 RTVIRQELLLDRVWRFVTDQ-----------ERNRGIIGLYGTGGVGKTTLLKQRANLKK-----I-QADIGKKIGLSTK 140 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-----i-~~~i~~~~~~~~~ 140 (294)
..++|.+..+.+|.+++... .....-|.|+|++|+|||+||+.+.+... + ...+...
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~------ 277 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK------ 277 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTS------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhh------
Confidence 35899999999888877532 23556799999999999999999833210 0 0011100
Q ss_pred CcccCChHHHHHHHHHHhccCCeEEEEccccCc--------c-----chhhhcCCcC--CCCCCcEEEEecCChHH----
Q 048597 141 SWQENSFEDKALDIAGILSRKRFVLLLDDIWEH--------I-----NLNKLGVPLQ--YLHLGSKIVFTTNSRVV---- 201 (294)
Q Consensus 141 ~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~--------~-----~~~~l~~~l~--~~~~gs~iivTtr~~~v---- 201 (294)
............+.....++..+|+||++... . ....+...+. ....+..||.||.....
T Consensus 278 -~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~a 356 (489)
T 3hu3_A 278 -LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 (489)
T ss_dssp -CTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGG
T ss_pred -hcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHH
Confidence 01111222233334444567789999999531 0 1111211111 12234466666665422
Q ss_pred -hhccCCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCC-hHHHHHH
Q 048597 202 -CGQMEATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCL-PLALKTV 260 (294)
Q Consensus 202 -~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl-Plai~~i 260 (294)
........ +.+...+.++-.++|..++..........+ .++++.+.|. +-.+..+
T Consensus 357 l~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp GGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred HhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhH----HHHHHHccCCcHHHHHHH
Confidence 11122333 889999999999999888754432333333 5567778775 4444443
No 44
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.38 E-value=1.8e-06 Score=79.04 Aligned_cols=175 Identities=14% Similarity=0.036 Sum_probs=95.8
Q ss_pred CceeehhHHHHHHHHHHhc----------CCCCceEEEEEcCCCChHHHHHHHhhChh-HHHHHHHHHhCCCCCCc----
Q 048597 78 RTVIRQELLLDRVWRFVTD----------QERNRGIIGLYGTGGVGKTTLLKQRANLK-KIQADIGKKIGLSTKSW---- 142 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~-~i~~~i~~~~~~~~~~~---- 142 (294)
..++|.+..++.|.+.+.. .....+.|.|+|++|+|||+||+.+.+.. .. ..+.+.....
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~-----~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS-----TFFSISSSDLVSKW 208 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSS-----EEEEECCC------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCC-----CEEEEeHHHHHhhh
Confidence 4589999988888887631 11245789999999999999999885422 00 0000010000
Q ss_pred ccCChHHHHHHHHHH-hccCCeEEEEccccCcc-------------chhhhcCCcCC---CCCCcEEEEecCChHH---h
Q 048597 143 QENSFEDKALDIAGI-LSRKRFVLLLDDIWEHI-------------NLNKLGVPLQY---LHLGSKIVFTTNSRVV---C 202 (294)
Q Consensus 143 ~~~~~~~~~~~l~~~-l~~kr~LlvlDdv~~~~-------------~~~~l~~~l~~---~~~gs~iivTtr~~~v---~ 202 (294)
...... ....+... -..+..+|+||++.... ....+...+.. ...+..||.||..... +
T Consensus 209 ~g~~~~-~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~a 287 (444)
T 2zan_A 209 LGESEK-LVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSA 287 (444)
T ss_dssp ---CCC-THHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHH
T ss_pred cchHHH-HHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHH
Confidence 000111 11222222 24567899999997530 01122222211 2335566767755422 1
Q ss_pred hccCCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCC-hHHHHHHH
Q 048597 203 GQMEATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCL-PLALKTVG 261 (294)
Q Consensus 203 ~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl-Plai~~i~ 261 (294)
-.-.... +.+...+.++-..+|..++........ ......|++.+.|. +-.|..+.
T Consensus 288 l~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~---~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 288 IRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT---EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp HHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 1113333 778888888888999887754321111 24457899999995 43444443
No 45
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.38 E-value=9.4e-06 Score=71.34 Aligned_cols=167 Identities=10% Similarity=0.010 Sum_probs=96.4
Q ss_pred hHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChh--------------HHHHHHHHHhC-----CCCCC-cc
Q 048597 84 ELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLK--------------KIQADIGKKIG-----LSTKS-WQ 143 (294)
Q Consensus 84 ~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~--------------~i~~~i~~~~~-----~~~~~-~~ 143 (294)
++..+.+...+..+ .-.+.+.++|+.|+||||+|+.+.... ..-..+...-. +.... ..
T Consensus 8 ~~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 86 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKN 86 (334)
T ss_dssp HHHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCS
T ss_pred HHHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCC
Confidence 44566777777655 134579999999999999998872110 01111111100 10000 01
Q ss_pred cCChHHHHHHHHHHh-----ccCCeEEEEccccCc--cchhhhcCCcCCCCCCcEEEEecCChH-Hhh-c-cCCceeecC
Q 048597 144 ENSFEDKALDIAGIL-----SRKRFVLLLDDIWEH--INLNKLGVPLQYLHLGSKIVFTTNSRV-VCG-Q-MEATMLNAS 213 (294)
Q Consensus 144 ~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~-~-~~~~~~~l~ 213 (294)
....++. ..+.+.+ .+++.++|+|+++.. ...+.+...+.....++.+|++|.+.. +.. . -.+..+++.
T Consensus 87 ~~~i~~i-r~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~ 165 (334)
T 1a5t_A 87 TLGVDAV-REVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLA 165 (334)
T ss_dssp SBCHHHH-HHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred CCCHHHH-HHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCC
Confidence 1223333 2344443 356789999999763 334445444444444567777766543 211 1 122349999
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHH
Q 048597 214 PLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTV 260 (294)
Q Consensus 214 ~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i 260 (294)
++++++..+.+.+... .+ .+....+++.++|.|..+..+
T Consensus 166 ~~~~~~~~~~L~~~~~-----~~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 166 PPPEQYAVTWLSREVT-----MS---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp CCCHHHHHHHHHHHCC-----CC---HHHHHHHHHHTTTCHHHHHHT
T ss_pred CCCHHHHHHHHHHhcC-----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 9999999998887751 11 245578999999999766543
No 46
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.35 E-value=1.4e-05 Score=68.70 Aligned_cols=175 Identities=13% Similarity=0.042 Sum_probs=95.9
Q ss_pred CceeehhHHHHHHHHHHhcC----------CCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCc---cc
Q 048597 78 RTVIRQELLLDRVWRFVTDQ----------ERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSW---QE 144 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~---~~ 144 (294)
..++|.+..++.+.+++... ......+.|+|++|+||||||+.+...... ..+.+..... ..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~-----~~~~i~~~~l~~~~~ 95 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA-----TFLNISAASLTSKYV 95 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC-----EEEEEESTTTSSSSC
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-----CeEEeeHHHHhhccc
Confidence 46899999999988877431 113578999999999999999988432110 0000111110 01
Q ss_pred CChHHHHHHHHHH-hccCCeEEEEccccCccc-------------hhhhc---CCcCCC--CCCcEEEEecCChH-----
Q 048597 145 NSFEDKALDIAGI-LSRKRFVLLLDDIWEHIN-------------LNKLG---VPLQYL--HLGSKIVFTTNSRV----- 200 (294)
Q Consensus 145 ~~~~~~~~~l~~~-l~~kr~LlvlDdv~~~~~-------------~~~l~---~~l~~~--~~gs~iivTtr~~~----- 200 (294)
.........+... ...+..+|+||++..... ...+. ..++.. ..+..||.||....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~ 175 (297)
T 3b9p_A 96 GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEA 175 (297)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHH
T ss_pred chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHH
Confidence 1222333333332 245678999999965210 00111 111111 12345666666532
Q ss_pred HhhccCCceeecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChH-HHHHHH
Q 048597 201 VCGQMEATMLNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPL-ALKTVG 261 (294)
Q Consensus 201 v~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~~i~ 261 (294)
+...+. ..+.+...+.++...++...+....... -......+++.+.|.+- ++..+.
T Consensus 176 l~~R~~-~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 176 ALRRFT-KRVYVSLPDEQTRELLLNRLLQKQGSPL---DTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp HHHHCC-EEEECCCCCHHHHHHHHHHHHGGGSCCS---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHhhCC-eEEEeCCcCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 222222 1277778888888888877664322111 13456789999999886 554443
No 47
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.32 E-value=7.2e-06 Score=73.38 Aligned_cols=196 Identities=16% Similarity=0.120 Sum_probs=107.4
Q ss_pred CceeehhHHHHHHHHHHhc-----------CCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCC
Q 048597 78 RTVIRQELLLDRVWRFVTD-----------QERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENS 146 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~ 146 (294)
..+.|.++.+++|.+.+.- +-..++-|.++||+|+|||.||+.+.+.... ..+.+........-
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~-----~f~~v~~s~l~sk~ 222 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC-----KFIRVSGAELVQKY 222 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC-----EEEEEEGGGGSCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCC-----CceEEEhHHhhccc
Confidence 3467888888777766542 1235678999999999999999988432110 00011111111111
Q ss_pred ---hHHHHHHHHHH-hccCCeEEEEccccCcc----------c------hhhhcCCcC--CCCCCcEEEEecCChHH---
Q 048597 147 ---FEDKALDIAGI-LSRKRFVLLLDDIWEHI----------N------LNKLGVPLQ--YLHLGSKIVFTTNSRVV--- 201 (294)
Q Consensus 147 ---~~~~~~~l~~~-l~~kr~LlvlDdv~~~~----------~------~~~l~~~l~--~~~~gs~iivTtr~~~v--- 201 (294)
.+.....++.. -...+++|++|++.... + ...+...+. ....+..||.||...+.
T Consensus 223 vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDp 302 (405)
T 4b4t_J 223 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDP 302 (405)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCH
T ss_pred cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCH
Confidence 12222233322 24678999999997520 0 111111111 12334456677764432
Q ss_pred --hhccCCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHH-HHHH---HHH--HcCC---CC
Q 048597 202 --CGQMEATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLA-LKTV---GRA--MRSI---SS 269 (294)
Q Consensus 202 --~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla-i~~i---~~~--L~~~---~~ 269 (294)
........ +++...+.++-.++|+.+.........-++ ..+++.|.|+-=| |..+ |.+ ++.+ -+
T Consensus 303 AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl----~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt 378 (405)
T 4b4t_J 303 ALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINL----RKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVT 378 (405)
T ss_dssp HHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCH----HHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCC
T ss_pred hHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 22123334 889888999989999877754432333343 5677888886532 2222 222 3332 35
Q ss_pred HHHHHHHHHHHHh
Q 048597 270 IEEWEHAIKIILR 282 (294)
Q Consensus 270 ~~~w~~~l~~l~~ 282 (294)
.++++.+++.+..
T Consensus 379 ~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 379 QEDFELAVGKVMN 391 (405)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 6788888776644
No 48
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.26 E-value=1.3e-05 Score=70.36 Aligned_cols=190 Identities=17% Similarity=0.095 Sum_probs=102.0
Q ss_pred CceeehhHHHHHHHHHHhcC---CCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHHHHHHH
Q 048597 78 RTVIRQELLLDRVWRFVTDQ---ERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFEDKALDI 154 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l 154 (294)
..++|.+..++.+...+... ......+.++|++|+|||||++.+.+.... .+...... ......++.. +
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~------~~~~~sg~-~~~~~~~l~~-~ 96 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT------NIHVTSGP-VLVKQGDMAA-I 96 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC------CEEEEETT-TCCSHHHHHH-H
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC------CEEEEech-HhcCHHHHHH-H
Confidence 45688887777777666532 234578999999999999999988553210 00000000 0111222222 2
Q ss_pred HHHhccCCeEEEEccccCcc--chhhhcCCcCCC--------C----------CCcEEE-EecCChHH----hhccCCce
Q 048597 155 AGILSRKRFVLLLDDIWEHI--NLNKLGVPLQYL--------H----------LGSKIV-FTTNSRVV----CGQMEATM 209 (294)
Q Consensus 155 ~~~l~~kr~LlvlDdv~~~~--~~~~l~~~l~~~--------~----------~gs~ii-vTtr~~~v----~~~~~~~~ 209 (294)
...+ .++.++++|++.... ..+.+...+... . ....++ .|++...+ ...+ ..
T Consensus 97 ~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~--~l 173 (334)
T 1in4_A 97 LTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRF--GI 173 (334)
T ss_dssp HHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTC--SE
T ss_pred HHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhc--Cc
Confidence 2222 345688889886521 222221111000 0 011222 34443322 2222 22
Q ss_pred -eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHHHHHHHHH------HcC--CCCHHHHHHHHHHH
Q 048597 210 -LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLALKTVGRA------MRS--ISSIEEWEHAIKII 280 (294)
Q Consensus 210 -~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~i~~~------L~~--~~~~~~w~~~l~~l 280 (294)
+.+++.+.++..+++.+.+..... ..-.+.+..|++.+.|.|-.+..+... +.. .-+.+.-+.+++.+
T Consensus 174 ~~~Ld~~~~~~l~~iL~~~~~~~~~---~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 174 ILELDFYTVKELKEIIKRAASLMDV---EIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 889999999999999887632221 122466899999999999765544322 222 23456666666655
Q ss_pred H
Q 048597 281 L 281 (294)
Q Consensus 281 ~ 281 (294)
.
T Consensus 251 ~ 251 (334)
T 1in4_A 251 N 251 (334)
T ss_dssp T
T ss_pred C
Confidence 3
No 49
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=3.9e-05 Score=69.66 Aligned_cols=196 Identities=16% Similarity=0.098 Sum_probs=105.4
Q ss_pred ceeehhHHHHHHHHHHhc-----------CCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCC-
Q 048597 79 TVIRQELLLDRVWRFVTD-----------QERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENS- 146 (294)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~- 146 (294)
.+.|.++.+++|.+.+.- +-..++-|.++||+|+|||+||+.+.+.... ..+.++.......-
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~-----~fi~vs~s~L~sk~v 284 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA-----TFIRVIGSELVQKYV 284 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC-----EEEEEEGGGGCCCSS
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC-----CeEEEEhHHhhcccC
Confidence 467888888877766532 1236788999999999999999988432111 00011111111111
Q ss_pred --hHHHHHHHH-HHhccCCeEEEEccccCcc--------c--------hhhhcCCcC--CCCCCcEEEEecCChHH---h
Q 048597 147 --FEDKALDIA-GILSRKRFVLLLDDIWEHI--------N--------LNKLGVPLQ--YLHLGSKIVFTTNSRVV---C 202 (294)
Q Consensus 147 --~~~~~~~l~-~~l~~kr~LlvlDdv~~~~--------~--------~~~l~~~l~--~~~~gs~iivTtr~~~v---~ 202 (294)
.......++ ..-...+++|++|++.... . ...+...+. ....+..||.||..... |
T Consensus 285 Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpA 364 (467)
T 4b4t_H 285 GEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPA 364 (467)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHH
T ss_pred CHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChh
Confidence 122222333 2335678999999987420 0 011111111 12234455666654332 1
Q ss_pred --hccCCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHH-HHHH---HHH--HcCC---CCH
Q 048597 203 --GQMEATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLA-LKTV---GRA--MRSI---SSI 270 (294)
Q Consensus 203 --~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla-i~~i---~~~--L~~~---~~~ 270 (294)
....... +++...+.++-.++|+.++........-++ ..|++.|.|+--| |..+ |.+ ++.. -+.
T Consensus 365 LlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl----~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~ 440 (467)
T 4b4t_H 365 LLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW----ELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATE 440 (467)
T ss_dssp HHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCH
T ss_pred hhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCH
Confidence 1113344 888888999889999877754332333333 5678888886422 1111 222 2222 356
Q ss_pred HHHHHHHHHHHhc
Q 048597 271 EEWEHAIKIILRY 283 (294)
Q Consensus 271 ~~w~~~l~~l~~~ 283 (294)
++...+++.+...
T Consensus 441 ~Df~~Al~kV~~g 453 (467)
T 4b4t_H 441 KDFLKAVDKVISG 453 (467)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC
Confidence 7788887776543
No 50
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.24 E-value=9.7e-06 Score=74.63 Aligned_cols=145 Identities=14% Similarity=0.100 Sum_probs=76.3
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHH------HhCCCCC-CcccCChHHH
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGK------KIGLSTK-SWQENSFEDK 150 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~------~~~~~~~-~~~~~~~~~~ 150 (294)
+.++|++.++..+...|... ...-+.|+|++|+|||+||+.+.....- ..+.. .+.+... .+.......+
T Consensus 180 d~iiGr~~~i~~l~~~l~r~--~~~~~LL~G~pG~GKT~la~~la~~l~~-~~~p~~l~~~~~~~l~~~~~~~g~~e~~~ 256 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIIN-NEVPEILRDKRVMTLDMGTKYRGEFEDRL 256 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHS-SCSCTTTSSCCEECC----------CTTH
T ss_pred CCccCcHHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHh-CCCChhhcCCeEEEeeCCccccchHHHHH
Confidence 35899999999999999765 4456789999999999999887432100 00000 0000000 0000001111
Q ss_pred HHHHHHHhccCCeEEEEccccCccchhhhcCCcCCCCCCcEEEEecCChHHh---hc-----cCCceeecCCCCHHHHHH
Q 048597 151 ALDIAGILSRKRFVLLLDDIWEHINLNKLGVPLQYLHLGSKIVFTTNSRVVC---GQ-----MEATMLNASPLRDEEAWR 222 (294)
Q Consensus 151 ~~~l~~~l~~kr~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~---~~-----~~~~~~~l~~L~~~~~~~ 222 (294)
...+...-..+..+|++| ........+...+..+ ..++|.+|...... .. -....+.+.+.+.++...
T Consensus 257 ~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~~g--~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~ 332 (468)
T 3pxg_A 257 KKVMDEIRQAGNIILFID--AAIDASNILKPSLARG--ELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQ 332 (468)
T ss_dssp HHHHHHHHTCCCCEEEEC--C--------CCCTTSS--SCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhcCC--CEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHH
Confidence 222222224567899999 2222223333333322 34566666544310 00 011238899999999999
Q ss_pred HHHHHhC
Q 048597 223 LFEEAVG 229 (294)
Q Consensus 223 Lf~~~~~ 229 (294)
++.....
T Consensus 333 iL~~~~~ 339 (468)
T 3pxg_A 333 ILQGLRD 339 (468)
T ss_dssp HHHHTTT
T ss_pred HHHHHHH
Confidence 9987653
No 51
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.20 E-value=1.3e-06 Score=74.23 Aligned_cols=169 Identities=14% Similarity=0.048 Sum_probs=87.1
Q ss_pred CceeehhHHHHHHHHHHhc----------CCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCc----c
Q 048597 78 RTVIRQELLLDRVWRFVTD----------QERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSW----Q 143 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~----~ 143 (294)
..++|.+..++.+.+.+.. .....+-+.|+|++|+|||+||+.+.+.... ..+.+..... .
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~-----~~~~v~~~~~~~~~~ 85 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV-----PFFSMGGSSFIEMFV 85 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC-----CCCCCCSCTTTTSCS
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----CEEEechHHHHHhhc
Confidence 4578988777777665541 1112345889999999999999988542110 0000110000 0
Q ss_pred cCChHHHHHHHHHHhccCCeEEEEccccCcc-----------------chhhhcCCcCC---CCCCcEEEEecCChHH--
Q 048597 144 ENSFEDKALDIAGILSRKRFVLLLDDIWEHI-----------------NLNKLGVPLQY---LHLGSKIVFTTNSRVV-- 201 (294)
Q Consensus 144 ~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~-----------------~~~~l~~~l~~---~~~gs~iivTtr~~~v-- 201 (294)
..........+......+..+|+|||+.... ....+...+.. ......+|.||.....
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld 165 (268)
T 2r62_A 86 GLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILD 165 (268)
T ss_dssp SSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSC
T ss_pred chHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcC
Confidence 0000001111222223466899999996421 12222222211 1122456667665432
Q ss_pred ---hhccCCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChH
Q 048597 202 ---CGQMEATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPL 255 (294)
Q Consensus 202 ---~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl 255 (294)
........ +.+.+.+.++-.+++...+..........+ ..|++.+.|.|-
T Consensus 166 ~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~----~~la~~~~g~~g 219 (268)
T 2r62_A 166 PALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNL----QEVAKLTAGLAG 219 (268)
T ss_dssp GGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCT----TTTTSSSCSSCH
T ss_pred HhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCH----HHHHHHcCCCCH
Confidence 11112223 888889999988988877643221122222 346777888764
No 52
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.20 E-value=2.2e-05 Score=71.25 Aligned_cols=198 Identities=12% Similarity=0.055 Sum_probs=107.6
Q ss_pred CceeehhHHHHHHHHHHhc-----------CCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCC
Q 048597 78 RTVIRQELLLDRVWRFVTD-----------QERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENS 146 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~ 146 (294)
..+.|.++.+++|.+.+.- +-..++-|.++||+|+|||+||+.+.+.... ..+.++.......-
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~-----~~~~v~~s~l~sk~ 255 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA-----NFIFSPASGIVDKY 255 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC-----EEEEEEGGGTCCSS
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEehhhhcccc
Confidence 3467888877777766642 1235688999999999999999988432210 00001111111111
Q ss_pred ---hHHHHHHHHHH-hccCCeEEEEccccCcc--------c--------hhhhcCCcC--CCCCCcEEEEecCChHHhh-
Q 048597 147 ---FEDKALDIAGI-LSRKRFVLLLDDIWEHI--------N--------LNKLGVPLQ--YLHLGSKIVFTTNSRVVCG- 203 (294)
Q Consensus 147 ---~~~~~~~l~~~-l~~kr~LlvlDdv~~~~--------~--------~~~l~~~l~--~~~~gs~iivTtr~~~v~~- 203 (294)
.......++.. -...+++|++|++.... . ...+...+. ....+..||.||.......
T Consensus 256 ~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDp 335 (437)
T 4b4t_L 256 IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDP 335 (437)
T ss_dssp SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCT
T ss_pred chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCH
Confidence 12222233332 24678999999997410 0 111111111 1233456777776544311
Q ss_pred -c--c-CCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHH-HHHH---HHH--HcCC---CC
Q 048597 204 -Q--M-EATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLA-LKTV---GRA--MRSI---SS 269 (294)
Q Consensus 204 -~--~-~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla-i~~i---~~~--L~~~---~~ 269 (294)
. . .... +++...+.+.-.++|+.+..........++ ..+++.+.|+-=| |..+ |.+ ++.. -+
T Consensus 336 AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~ 411 (437)
T 4b4t_L 336 ALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHIN 411 (437)
T ss_dssp TTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred HHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 1 1 1233 888888888888888877644332233343 5677888886532 2222 222 2322 35
Q ss_pred HHHHHHHHHHHHhcC
Q 048597 270 IEEWEHAIKIILRYG 284 (294)
Q Consensus 270 ~~~w~~~l~~l~~~~ 284 (294)
.++...+++.+....
T Consensus 412 ~~d~~~Al~~v~~~~ 426 (437)
T 4b4t_L 412 PDDLMKAVRKVAEVK 426 (437)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcc
Confidence 677888887776643
No 53
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.16 E-value=3.2e-07 Score=70.68 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=35.0
Q ss_pred ceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhC
Q 048597 79 TVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
.++|+...+.++.+.+..-.....-|.|+|++|+|||++|+.+.+
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHH
Confidence 478999999999888865333445688999999999999998854
No 54
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.16 E-value=2.7e-06 Score=73.51 Aligned_cols=47 Identities=26% Similarity=0.275 Sum_probs=36.8
Q ss_pred cCceeehhHHHHHHHHHHhcC------------CCCceEEEEEcCCCChHHHHHHHhhC
Q 048597 77 ERTVIRQELLLDRVWRFVTDQ------------ERNRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
...++|.+..++.+...+... ......+.++|++|+|||+||+.+..
T Consensus 14 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 356899999999988877641 12356788999999999999998843
No 55
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=1.2e-05 Score=72.92 Aligned_cols=199 Identities=14% Similarity=0.075 Sum_probs=102.9
Q ss_pred CceeehhHHHHHHHHHHhc----C-------CCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCC
Q 048597 78 RTVIRQELLLDRVWRFVTD----Q-------ERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENS 146 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~ 146 (294)
..+.|.++.+++|.+.+.. + -..++-|.++||+|+|||+||+.+.+.... ..+.++.......-
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~-----~f~~v~~s~l~~~~ 255 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA-----TFLKLAAPQLVQMY 255 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC-----EEEEEEGGGGCSSC
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC-----CEEEEehhhhhhcc
Confidence 3477888888888776532 1 235678999999999999999988432110 00001111111111
Q ss_pred ---hHHHHHHHHH-HhccCCeEEEEccccCc-------c-----c----hhhhcCCcC--CCCCCcEEEEecCChHH---
Q 048597 147 ---FEDKALDIAG-ILSRKRFVLLLDDIWEH-------I-----N----LNKLGVPLQ--YLHLGSKIVFTTNSRVV--- 201 (294)
Q Consensus 147 ---~~~~~~~l~~-~l~~kr~LlvlDdv~~~-------~-----~----~~~l~~~l~--~~~~gs~iivTtr~~~v--- 201 (294)
.......++. .-...+++|++|++... . . ...+...+. ....+..||.||.....
T Consensus 256 vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~ 335 (434)
T 4b4t_M 256 IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDP 335 (434)
T ss_dssp SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCT
T ss_pred cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCH
Confidence 1222333332 22467899999998641 0 0 011111111 12234456667765432
Q ss_pred hh--ccCCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHH-HHHH---HHH--HcCC---CC
Q 048597 202 CG--QMEATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLA-LKTV---GRA--MRSI---SS 269 (294)
Q Consensus 202 ~~--~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla-i~~i---~~~--L~~~---~~ 269 (294)
|- ...... +++...+.+.-.++|+.+.........-++ ..|++.|.|+-=| |..+ |.+ ++.. -+
T Consensus 336 AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl----~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~ 411 (434)
T 4b4t_M 336 ALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINW----QELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVK 411 (434)
T ss_dssp TTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCH----HHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBC
T ss_pred hHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 11 112233 888888888888888766533221222333 5677888885422 2222 222 2222 24
Q ss_pred HHHHHHHHHHHHhcCC
Q 048597 270 IEEWEHAIKIILRYGR 285 (294)
Q Consensus 270 ~~~w~~~l~~l~~~~~ 285 (294)
.++...+++.++...+
T Consensus 412 ~~Df~~Al~~v~~~~~ 427 (434)
T 4b4t_M 412 HEDFVEGISEVQARKS 427 (434)
T ss_dssp HHHHHHHHHSCSSSCC
T ss_pred HHHHHHHHHHHhCCCC
Confidence 5666666655544433
No 56
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.13 E-value=4.7e-06 Score=66.32 Aligned_cols=41 Identities=27% Similarity=0.296 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHhcCC-CCceEEEEEcCCCChHHHHHHHhhC
Q 048597 83 QELLLDRVWRFVTDQE-RNRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 83 r~~~~~~l~~~L~~~~-~~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
....++.+.+++.+-. .....+.|+|++|+|||||++.+.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4445555555554321 1357899999999999999998844
No 57
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.13 E-value=3.7e-05 Score=70.62 Aligned_cols=195 Identities=17% Similarity=0.142 Sum_probs=101.8
Q ss_pred CceeehhHHHHHHHHHHhc---C-------CCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccC--
Q 048597 78 RTVIRQELLLDRVWRFVTD---Q-------ERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQEN-- 145 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~---~-------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~-- 145 (294)
..++|.+..++++.+.+.. . -...+-|.|+|++|+||||||+.+.+.... ..+.++.......
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~-----~f~~is~~~~~~~~~ 90 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANV-----PFFHISGSDFVELFV 90 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC-----CEEEEEGGGTTTCCT
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC-----CeeeCCHHHHHHHHh
Confidence 4578988877666665432 1 112345889999999999999998542210 0000111111111
Q ss_pred --ChHHHHHHHHHHhccCCeEEEEccccCcc----------------chhhhcCCcC--CCCCCcEEEEecCChHHhh--
Q 048597 146 --SFEDKALDIAGILSRKRFVLLLDDIWEHI----------------NLNKLGVPLQ--YLHLGSKIVFTTNSRVVCG-- 203 (294)
Q Consensus 146 --~~~~~~~~l~~~l~~kr~LlvlDdv~~~~----------------~~~~l~~~l~--~~~~gs~iivTtr~~~v~~-- 203 (294)
........+.......+++|+||++.... ....+...+. ....+..||.||.......
T Consensus 91 g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~a 170 (476)
T 2ce7_A 91 GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPA 170 (476)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGG
T ss_pred cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchh
Confidence 11122223333345678999999996520 1122221111 1123556777776654321
Q ss_pred cc---CCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChH-HHHHHH---HHH--cC---CCCH
Q 048597 204 QM---EATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPL-ALKTVG---RAM--RS---ISSI 270 (294)
Q Consensus 204 ~~---~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~~i~---~~L--~~---~~~~ 270 (294)
.. .... +.+.+.+.++-.+++..++.........++ ..+++.+.|..- -+..+. .++ +. .-+.
T Consensus 171 llR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l----~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~ 246 (476)
T 2ce7_A 171 LLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNL----EIIAKRTPGFVGADLENLVNEAALLAAREGRDKITM 246 (476)
T ss_dssp GGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCH----HHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred hcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhH----HHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecH
Confidence 11 2233 788888888888888776644332222222 457888999772 222221 111 11 1345
Q ss_pred HHHHHHHHHHH
Q 048597 271 EEWEHAIKIIL 281 (294)
Q Consensus 271 ~~w~~~l~~l~ 281 (294)
++...+++.+.
T Consensus 247 ~dl~~al~~v~ 257 (476)
T 2ce7_A 247 KDFEEAIDRVI 257 (476)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 66777666553
No 58
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.12 E-value=3.4e-05 Score=75.22 Aligned_cols=146 Identities=15% Similarity=0.124 Sum_probs=77.8
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhH---HHHHH-HHHh-CCCC-CCcccCChHHHH
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKK---IQADI-GKKI-GLST-KSWQENSFEDKA 151 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---i~~~i-~~~~-~~~~-~~~~~~~~~~~~ 151 (294)
..++|++.++.++...|... ...-+.++|++|+|||++|+.+..... +-..+ ...+ .+.. ..+.......+.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~--~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~~e~~l~ 257 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLK 257 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHH
T ss_pred CCccCchHHHHHHHHHHhCC--CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccccchHHHHHH
Confidence 35899999999999999875 445678999999999999988743210 00000 0000 0000 000011111222
Q ss_pred HHHHHHhccCCeEEEEccccCccchhhhcCCcCCCCCCcEEEEecCChHH--------hhccCCceeecCCCCHHHHHHH
Q 048597 152 LDIAGILSRKRFVLLLDDIWEHINLNKLGVPLQYLHLGSKIVFTTNSRVV--------CGQMEATMLNASPLRDEEAWRL 223 (294)
Q Consensus 152 ~~l~~~l~~kr~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v--------~~~~~~~~~~l~~L~~~~~~~L 223 (294)
..+......++.+|++| ........+...+. ....++|.+|..... +-.-....+.+.+.+.++..++
T Consensus 258 ~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~i 333 (758)
T 3pxi_A 258 KVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQI 333 (758)
T ss_dssp HHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHH
T ss_pred HHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHH
Confidence 23333334678899999 22222222333332 223466666654431 0001122389999999999999
Q ss_pred HHHHhC
Q 048597 224 FEEAVG 229 (294)
Q Consensus 224 f~~~~~ 229 (294)
+.....
T Consensus 334 l~~~~~ 339 (758)
T 3pxi_A 334 LQGLRD 339 (758)
T ss_dssp HHHTTT
T ss_pred HHHHHH
Confidence 986553
No 59
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.12 E-value=3.7e-05 Score=74.95 Aligned_cols=147 Identities=16% Similarity=0.129 Sum_probs=83.8
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHHHH---H-HHHH-hCCCCC-----CcccCCh
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKIQA---D-IGKK-IGLSTK-----SWQENSF 147 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~---~-i~~~-~~~~~~-----~~~~~~~ 147 (294)
..++||+.++..+.+.|... ...-+.|+|++|+||||+|+.+.....-.. . .... +..... .......
T Consensus 186 d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~ 263 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDF 263 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCH
T ss_pred CCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchH
Confidence 35899999999999999876 456678999999999999998754210000 0 0000 000000 0011123
Q ss_pred HHHHHHHHHHh-ccCCeEEEEccccCc--------cc---hhhhcCCcCCCCCCcEEEEecCChHHhhcc--------CC
Q 048597 148 EDKALDIAGIL-SRKRFVLLLDDIWEH--------IN---LNKLGVPLQYLHLGSKIVFTTNSRVVCGQM--------EA 207 (294)
Q Consensus 148 ~~~~~~l~~~l-~~kr~LlvlDdv~~~--------~~---~~~l~~~l~~~~~gs~iivTtr~~~v~~~~--------~~ 207 (294)
......+.+.+ ..+..+|++||++.. .. ...+...+.. .+..+|.+|......... ..
T Consensus 264 e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~~~~I~at~~~~~~~~~~~d~aL~~Rf 341 (758)
T 1r6b_X 264 EKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTYQEFSNIFEKDRALARRF 341 (758)
T ss_dssp HHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCCEEEEEECHHHHHCCCCCTTSSGGGE
T ss_pred HHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CCeEEEEEeCchHHhhhhhcCHHHHhCc
Confidence 33334444444 345789999999753 11 1223333322 235666666654432111 11
Q ss_pred ceeecCCCCHHHHHHHHHHHh
Q 048597 208 TMLNASPLRDEEAWRLFEEAV 228 (294)
Q Consensus 208 ~~~~l~~L~~~~~~~Lf~~~~ 228 (294)
..+.+.+.+.++..+++....
T Consensus 342 ~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 342 QKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EEEECCCCCHHHHHHHHHHHH
T ss_pred eEEEcCCCCHHHHHHHHHHHH
Confidence 128899999999888887544
No 60
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.12 E-value=2.1e-05 Score=70.81 Aligned_cols=195 Identities=15% Similarity=0.113 Sum_probs=104.9
Q ss_pred ceeehhHHHHHHHHHHhc----C-------CCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccC--
Q 048597 79 TVIRQELLLDRVWRFVTD----Q-------ERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQEN-- 145 (294)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~-- 145 (294)
.+.|.++.+++|.+.+.- . -...+-|.++||+|+|||.||+.+.+.... ..+.++.......
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~-----~fi~v~~s~l~sk~v 257 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA-----TFLRIVGSELIQKYL 257 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC-----EEEEEESGGGCCSSS
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCC-----CEEEEEHHHhhhccC
Confidence 467888877777766532 1 235678999999999999999988432210 0001111111111
Q ss_pred -ChHHHHHHHHHHh-ccCCeEEEEccccCcc------------c----hhhhcCCcC--CCCCCcEEEEecCChHHhh--
Q 048597 146 -SFEDKALDIAGIL-SRKRFVLLLDDIWEHI------------N----LNKLGVPLQ--YLHLGSKIVFTTNSRVVCG-- 203 (294)
Q Consensus 146 -~~~~~~~~l~~~l-~~kr~LlvlDdv~~~~------------~----~~~l~~~l~--~~~~gs~iivTtr~~~v~~-- 203 (294)
..+.....++... ...+++|++|++.... . ...+...+. ....+..||.||...+...
T Consensus 258 Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpA 337 (437)
T 4b4t_I 258 GDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPA 337 (437)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTT
T ss_pred chHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHH
Confidence 1222333333332 4668999999987410 0 111111111 1223445667776544311
Q ss_pred cc---CCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChHH-HHHH---HH--HHcCC---CCH
Q 048597 204 QM---EATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPLA-LKTV---GR--AMRSI---SSI 270 (294)
Q Consensus 204 ~~---~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla-i~~i---~~--~L~~~---~~~ 270 (294)
.. .... +++..-+.++-.++|+.+.........-++ ..|++.+.|+-=| |..+ |. .++.. -+.
T Consensus 338 LlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~ 413 (437)
T 4b4t_I 338 LIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTA 413 (437)
T ss_dssp SSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCH
T ss_pred HhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCH
Confidence 11 2223 788888888888888877754432333344 5677788876422 2211 22 23332 246
Q ss_pred HHHHHHHHHHHh
Q 048597 271 EEWEHAIKIILR 282 (294)
Q Consensus 271 ~~w~~~l~~l~~ 282 (294)
++.+.+++.+..
T Consensus 414 eDf~~Al~rv~~ 425 (437)
T 4b4t_I 414 EDFKQAKERVMK 425 (437)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 778888777654
No 61
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.07 E-value=3.1e-06 Score=71.77 Aligned_cols=44 Identities=14% Similarity=0.130 Sum_probs=33.0
Q ss_pred ceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhh
Q 048597 79 TVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.++|.+..+.++.+.+..-......|.|+|++|+|||+||+.+.
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~ 50 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLH 50 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHH
T ss_pred cceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHH
Confidence 47899988888887776532234678899999999999999983
No 62
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.07 E-value=1.3e-05 Score=69.25 Aligned_cols=45 Identities=31% Similarity=0.376 Sum_probs=35.7
Q ss_pred CceeehhHHHHHHHHHHhcC-------CCCceEEEEEcCCCChHHHHHHHhh
Q 048597 78 RTVIRQELLLDRVWRFVTDQ-------ERNRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..++|.+..++.+...+... ......+.++|++|+||||+|+.+.
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la 68 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLA 68 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHH
Confidence 45789999888888887653 1123589999999999999999883
No 63
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.06 E-value=1.3e-06 Score=66.99 Aligned_cols=107 Identities=10% Similarity=0.067 Sum_probs=58.8
Q ss_pred ceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHHHHHHHHHHh
Q 048597 79 TVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFEDKALDIAGIL 158 (294)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l 158 (294)
.++|++..+.++.+.+..-.....-|.|+|++|+|||++|+.+.+... ..+.+..... .......+.+.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~~----~~~~~~~~~~~- 73 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVEY----LIDMPMELLQK- 73 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTTH----HHHCHHHHHHH-
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhhC----ChHhhhhHHHh-
Confidence 578998888888888764222335688999999999999999976543 1121211110 01111222222
Q ss_pred ccCCeEEEEccccCc--cchhhhcCCcCCC-CCCcEEEEecC
Q 048597 159 SRKRFVLLLDDIWEH--INLNKLGVPLQYL-HLGSKIVFTTN 197 (294)
Q Consensus 159 ~~kr~LlvlDdv~~~--~~~~~l~~~l~~~-~~gs~iivTtr 197 (294)
.+.-.++||++... .....+...+... ..+.++|+||.
T Consensus 74 -a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 74 -AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp -TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred -CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 23458899999763 2222232222211 23467887775
No 64
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.05 E-value=3.3e-06 Score=73.32 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=36.3
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhh
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
+.++|+...+.++.+.+..-......|.|+|++|+|||++|+.+.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~ 46 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALH 46 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHH
Confidence 357899999999888887643345678899999999999999983
No 65
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.04 E-value=1.3e-05 Score=79.27 Aligned_cols=145 Identities=16% Similarity=0.182 Sum_probs=76.5
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHH------HHHHHHHhCCCCCCc-----ccCC
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKI------QADIGKKIGLSTKSW-----QENS 146 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i------~~~i~~~~~~~~~~~-----~~~~ 146 (294)
..++||+.++.+++..|... ....+.++|++|+||||||+.+.....- ... ...+.+..... ....
T Consensus 170 d~viGr~~~i~~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~-~~~~~l~~~~l~~g~~~~g~ 246 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKG-KRIVSLQMGSLLAGAKYRGE 246 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTT-CEEEEECC-----------C
T ss_pred cccCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcC-CeEEEeehHHhhccCccchH
Confidence 34799999999999999775 4456789999999999999887542100 000 00000000000 0011
Q ss_pred hHHHHHHHHHHhc--cCCeEEEEccccCcc-------chh---hhcCCcCCCCCCcEEEEecCChHH-----hhcc--CC
Q 048597 147 FEDKALDIAGILS--RKRFVLLLDDIWEHI-------NLN---KLGVPLQYLHLGSKIVFTTNSRVV-----CGQM--EA 207 (294)
Q Consensus 147 ~~~~~~~l~~~l~--~kr~LlvlDdv~~~~-------~~~---~l~~~l~~~~~gs~iivTtr~~~v-----~~~~--~~ 207 (294)
.......+...+. +++.+|++|+++... .++ .+...+.. .+..+|.+|..... .... ..
T Consensus 247 ~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~~~~~~~~~~d~aL~rRf 324 (854)
T 1qvr_A 247 FEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATTLDEYREIEKDPALERRF 324 (854)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEECHHHHHHHTTCTTTCSCC
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecCchHHhhhccCHHHHhCC
Confidence 2222233333332 367899999997631 121 12212211 23456655554432 1111 11
Q ss_pred ceeecCCCCHHHHHHHHHHH
Q 048597 208 TMLNASPLRDEEAWRLFEEA 227 (294)
Q Consensus 208 ~~~~l~~L~~~~~~~Lf~~~ 227 (294)
..+.+.+++.++..+++...
T Consensus 325 ~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 325 QPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp CCEEECCCCHHHHHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHhh
Confidence 22889999999999988643
No 66
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.01 E-value=8.5e-05 Score=62.46 Aligned_cols=195 Identities=17% Similarity=0.102 Sum_probs=100.5
Q ss_pred CceeehhHHHHHHHHHHh---cC-------CCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCc----c
Q 048597 78 RTVIRQELLLDRVWRFVT---DQ-------ERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSW----Q 143 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~---~~-------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~----~ 143 (294)
..++|.+..++++.+.+. .. .....-+.|+|++|+||||||+.+.+.... ..+.+..... .
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~-----~~~~i~~~~~~~~~~ 86 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV-----PFFTISGSDFVEMFV 86 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC-----CEEEECSCSSTTSCC
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC-----CEEEEeHHHHHHHhh
Confidence 467898877776655442 21 012346889999999999999998543210 0011111111 1
Q ss_pred cCChHHHHHHHHHHhccCCeEEEEccccCcc----------------chhhhcCCcC--CCCCCcEEEEecCChHH-hh-
Q 048597 144 ENSFEDKALDIAGILSRKRFVLLLDDIWEHI----------------NLNKLGVPLQ--YLHLGSKIVFTTNSRVV-CG- 203 (294)
Q Consensus 144 ~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~----------------~~~~l~~~l~--~~~~gs~iivTtr~~~v-~~- 203 (294)
..........+.........++++|++.... ....+...+. ....+..||.||..... ..
T Consensus 87 ~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~ 166 (257)
T 1lv7_A 87 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA 166 (257)
T ss_dssp CCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGG
T ss_pred hhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHH
Confidence 1222333333333334556799999985310 0111111111 11234456666655431 11
Q ss_pred cc---CCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCC-ChHHHHHHHH-----HH-cC--CCCH
Q 048597 204 QM---EATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCC-LPLALKTVGR-----AM-RS--ISSI 270 (294)
Q Consensus 204 ~~---~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G-lPlai~~i~~-----~L-~~--~~~~ 270 (294)
.. .... +.+...+.++-.+++...+.......... ...++..+.| .+--+..+.. .. ++ .-+.
T Consensus 167 l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~----~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~ 242 (257)
T 1lv7_A 167 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSM 242 (257)
T ss_dssp GGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred HcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcccc----HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccH
Confidence 11 1223 77888888888888877664332222222 2457788888 6654443321 11 11 1356
Q ss_pred HHHHHHHHHHH
Q 048597 271 EEWEHAIKIIL 281 (294)
Q Consensus 271 ~~w~~~l~~l~ 281 (294)
++++.+++.+.
T Consensus 243 ~~~~~a~~~~~ 253 (257)
T 1lv7_A 243 VEFEKAKDKIM 253 (257)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 77777766553
No 67
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.97 E-value=7.5e-05 Score=69.00 Aligned_cols=168 Identities=17% Similarity=0.109 Sum_probs=88.7
Q ss_pred CceeehhHHHHHHHHHHh---cCC-------CCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCCh
Q 048597 78 RTVIRQELLLDRVWRFVT---DQE-------RNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSF 147 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~ 147 (294)
..++|.+..+.++.+... ... .-.+-+.|+|++|+||||||+.+.+... ...+.++.........
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~ 105 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFV 105 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCT
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhh
Confidence 457898877666655543 210 1123499999999999999999854321 0011111111112222
Q ss_pred HHHHHHHHHHhcc----CCeEEEEccccCcc------------c----hhhhcCCcCC--CCCCcEEEEecCChHHhh--
Q 048597 148 EDKALDIAGILSR----KRFVLLLDDIWEHI------------N----LNKLGVPLQY--LHLGSKIVFTTNSRVVCG-- 203 (294)
Q Consensus 148 ~~~~~~l~~~l~~----kr~LlvlDdv~~~~------------~----~~~l~~~l~~--~~~gs~iivTtr~~~v~~-- 203 (294)
......+...++. ...++++|++.... . ...+...+.. ...+..++.+|.......
T Consensus 106 g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~a 185 (499)
T 2dhr_A 106 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA 185 (499)
T ss_dssp THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTT
T ss_pred hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcc
Confidence 2233344444432 34799999995410 1 1122222221 123345566666554421
Q ss_pred cc---CCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCCh
Q 048597 204 QM---EATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLP 254 (294)
Q Consensus 204 ~~---~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 254 (294)
.. .... +.+...+.++-.+++..++.......... ...|+..+.|+.
T Consensus 186 Llr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 186 LLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp TSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSST----THHHHTTSCSCC
T ss_pred cccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHH----HHHHHHhcCCCC
Confidence 11 2223 78888888888888877653322111112 245777788866
No 68
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.96 E-value=5.4e-06 Score=65.73 Aligned_cols=44 Identities=25% Similarity=0.354 Sum_probs=37.6
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhC
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
..++|++.+++.+.+.+... ....+.|+|++|+||||||+.+..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHH
Confidence 45799999999999998775 456789999999999999988743
No 69
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.95 E-value=8.9e-05 Score=67.07 Aligned_cols=168 Identities=17% Similarity=0.148 Sum_probs=86.5
Q ss_pred CceeehhHHHHHHHHHHhc-----------CCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCC
Q 048597 78 RTVIRQELLLDRVWRFVTD-----------QERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENS 146 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~ 146 (294)
..+.|.++.+++|.+.+.. +-..++-|.++||+|+|||+||+.+.+.... ..+.++.......-
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~-----~~~~v~~~~l~~~~ 246 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKA-----AFIRVNGSEFVHKY 246 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTC-----EEEEEEGGGTCCSS
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CeEEEecchhhccc
Confidence 3577888888887776642 1235678999999999999999988432110 00001111111111
Q ss_pred ---hHHHHHHHH-HHhccCCeEEEEccccCcc------------c----hhhhcCCcC--CCCCCcEEEEecCChHH---
Q 048597 147 ---FEDKALDIA-GILSRKRFVLLLDDIWEHI------------N----LNKLGVPLQ--YLHLGSKIVFTTNSRVV--- 201 (294)
Q Consensus 147 ---~~~~~~~l~-~~l~~kr~LlvlDdv~~~~------------~----~~~l~~~l~--~~~~gs~iivTtr~~~v--- 201 (294)
.......++ ..-...++++++|++.... . ...+...+. ....+..||.||.....
T Consensus 247 ~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~ 326 (428)
T 4b4t_K 247 LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDP 326 (428)
T ss_dssp CSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCH
T ss_pred cchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcCh
Confidence 122222232 2234678999999986310 0 111111111 12334456777764432
Q ss_pred --hhccCCce-eecCCCC-HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCCh
Q 048597 202 --CGQMEATM-LNASPLR-DEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLP 254 (294)
Q Consensus 202 --~~~~~~~~-~~l~~L~-~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 254 (294)
........ +++..++ .++-..+|..+.........-++ ..+++.|.|+-
T Consensus 327 AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl----~~lA~~t~G~s 379 (428)
T 4b4t_K 327 ALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL----DSLIIRNDSLS 379 (428)
T ss_dssp HHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH----HHHHHHTTTCC
T ss_pred hhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHHCCCCC
Confidence 21122333 7776564 45555666655533222223334 56777888764
No 70
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.91 E-value=3.9e-05 Score=64.47 Aligned_cols=168 Identities=17% Similarity=0.107 Sum_probs=83.1
Q ss_pred CceeehhHHHHHHHHHHhc---C-------CCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccC--
Q 048597 78 RTVIRQELLLDRVWRFVTD---Q-------ERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQEN-- 145 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~---~-------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~-- 145 (294)
..++|.+..+.++.+.... . -.-.+-+.|+|++|+|||||++.+...... ..+.+........
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~-----~~i~~~~~~~~~~~~ 90 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGSDFVEMFV 90 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHHHHHHSCT
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-----CEEEeeHHHHHHHHh
Confidence 4578887666555544321 1 001223899999999999999998543210 0000000000000
Q ss_pred -ChHHHHHHHHHHh-ccCCeEEEEccccCcc------------c----hhhhcCCcCCC--CCCcEEEEecCChHHhh--
Q 048597 146 -SFEDKALDIAGIL-SRKRFVLLLDDIWEHI------------N----LNKLGVPLQYL--HLGSKIVFTTNSRVVCG-- 203 (294)
Q Consensus 146 -~~~~~~~~l~~~l-~~kr~LlvlDdv~~~~------------~----~~~l~~~l~~~--~~gs~iivTtr~~~v~~-- 203 (294)
........+.+.. .....++++|++.... . ...+...+... .....++.+|.......
T Consensus 91 ~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~ 170 (254)
T 1ixz_A 91 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA 170 (254)
T ss_dssp THHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGG
T ss_pred hHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHH
Confidence 0111112222222 2346899999995310 1 11221122211 12234455665554321
Q ss_pred ---ccCCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCCh
Q 048597 204 ---QMEATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLP 254 (294)
Q Consensus 204 ---~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 254 (294)
...... +.+...+.++-.+++...+..........+ ..+++.+.|.-
T Consensus 171 l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~----~~la~~~~G~~ 221 (254)
T 1ixz_A 171 LLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDL----ALLAKRTPGFV 221 (254)
T ss_dssp GGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCH----HHHHHTCTTCC
T ss_pred HcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCH----HHHHHHcCCCC
Confidence 112333 888888988888888776643221222222 46788888864
No 71
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.88 E-value=0.0001 Score=67.52 Aligned_cols=93 Identities=10% Similarity=0.011 Sum_probs=55.7
Q ss_pred eEEEEccccC--ccchhhhcCCcCCCCCCcEEEEec---------CC----h-----HHhhccCCceeecCCCCHHHHHH
Q 048597 163 FVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTT---------NS----R-----VVCGQMEATMLNASPLRDEEAWR 222 (294)
Q Consensus 163 ~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTt---------r~----~-----~v~~~~~~~~~~l~~L~~~~~~~ 222 (294)
-++++|+++. .+..+.+...+...... .+|+.| .+ . .+... +..+.+.+++.++..+
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR--~~~~~~~~~~~~e~~~ 373 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDR--VMIIRTMLYTPQEMKQ 373 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTT--EEEEECCCCCHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhh--cceeeCCCCCHHHHHH
Confidence 3899999976 34556665555443333 344344 11 0 01111 1228999999999999
Q ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHhC-CCChHHHHHHH
Q 048597 223 LFEEAVGRYVLDSHPDIPELAKTMAEEC-CCLPLALKTVG 261 (294)
Q Consensus 223 Lf~~~~~~~~~~~~~~~~~~~~~I~~~c-~GlPlai~~i~ 261 (294)
++..++....... -.+....|++.+ .|.|..+..+.
T Consensus 374 iL~~~~~~~~~~~---~~~~~~~i~~~a~~g~~r~a~~ll 410 (456)
T 2c9o_A 374 IIKIRAQTEGINI---SEEALNHLGEIGTKTTLRYSVQLL 410 (456)
T ss_dssp HHHHHHHHHTCCB---CHHHHHHHHHHHHHSCHHHHHHTH
T ss_pred HHHHHHHHhCCCC---CHHHHHHHHHHccCCCHHHHHHHH
Confidence 9988763222111 135567888888 88887665543
No 72
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.85 E-value=1.1e-05 Score=78.74 Aligned_cols=147 Identities=19% Similarity=0.163 Sum_probs=76.1
Q ss_pred CceeehhHHHHHHHHHHhcCC-------CCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHHH
Q 048597 78 RTVIRQELLLDRVWRFVTDQE-------RNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFEDK 150 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~~ 150 (294)
..++|.+..++.+...+.... .....+.++|++|+|||+||+.+.....-...-...+.+ ..+.......
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~--s~~~~~~~~~- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDM--SEYMEKHSTS- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEG--GGGCSSCCCC-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEec--hhcccccccc-
Confidence 458999998888888886421 123379999999999999999884422000000000000 0000000000
Q ss_pred HHHHHHHhc-cCCeEEEEccccCc--cchhhhcCCcCC-----------CCCCcEEEEecCC-----------------h
Q 048597 151 ALDIAGILS-RKRFVLLLDDIWEH--INLNKLGVPLQY-----------LHLGSKIVFTTNS-----------------R 199 (294)
Q Consensus 151 ~~~l~~~l~-~kr~LlvlDdv~~~--~~~~~l~~~l~~-----------~~~gs~iivTtr~-----------------~ 199 (294)
...+...+. ....+|+||++... .....+...+.. .....+||+||.. .
T Consensus 568 ~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p 647 (758)
T 3pxi_A 568 GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRP 647 (758)
T ss_dssp ---CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCH
T ss_pred cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCH
Confidence 111222222 33458999999762 222222222111 1134578888873 1
Q ss_pred HHhhccCCceeecCCCCHHHHHHHHHHHh
Q 048597 200 VVCGQMEATMLNASPLRDEEAWRLFEEAV 228 (294)
Q Consensus 200 ~v~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 228 (294)
.....+. ..+.+.++++++...++...+
T Consensus 648 ~l~~Rl~-~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 648 EFINRID-EIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp HHHTTSS-EEEECC--CHHHHHHHHHHHH
T ss_pred HHHhhCC-eEEecCCCCHHHHHHHHHHHH
Confidence 1122221 238899999999888876544
No 73
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.80 E-value=0.00018 Score=62.23 Aligned_cols=142 Identities=12% Similarity=0.039 Sum_probs=82.1
Q ss_pred ehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHHHHH-HHHHhCCCCCCcccCChHHHHHHHHHHh--
Q 048597 82 RQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKIQAD-IGKKIGLSTKSWQENSFEDKALDIAGIL-- 158 (294)
Q Consensus 82 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~-i~~~~~~~~~~~~~~~~~~~~~~l~~~l-- 158 (294)
|-++.++.|...+..+ +.+.+.++|+.|+||||+|..+......... -...+.+.... .....++... +.+.+
T Consensus 1 g~~~~~~~L~~~i~~~--~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~-~~~~id~ir~-li~~~~~ 76 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS--EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-ENIGIDDIRT-IKDFLNY 76 (305)
T ss_dssp ---CHHHHHHHHHHTC--SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS-SCBCHHHHHH-HHHHHTS
T ss_pred ChHHHHHHHHHHHHCC--CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc-CCCCHHHHHH-HHHHHhh
Confidence 4456677788888776 3779999999999999999887542000000 00000011000 1223333333 43433
Q ss_pred ---ccCCeEEEEccccC--ccchhhhcCCcCCCCCCcEEEEecCChH-Hh-hccCCceeecCCCCHHHHHHHHHHHh
Q 048597 159 ---SRKRFVLLLDDIWE--HINLNKLGVPLQYLHLGSKIVFTTNSRV-VC-GQMEATMLNASPLRDEEAWRLFEEAV 228 (294)
Q Consensus 159 ---~~kr~LlvlDdv~~--~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~-~~~~~~~~~l~~L~~~~~~~Lf~~~~ 228 (294)
.+++-++|+|+++. ....+.+...+......+.+|++|.+.. +. ....- .+++.++++++..+.+.+.+
T Consensus 77 ~p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 77 SPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp CCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred ccccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 24567999999976 3445556555544445667777765432 21 11112 69999999999999888765
No 74
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.79 E-value=0.00018 Score=61.25 Aligned_cols=147 Identities=14% Similarity=0.057 Sum_probs=76.0
Q ss_pred CceeehhHHHHHHHHHHhcC-----------CCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCC
Q 048597 78 RTVIRQELLLDRVWRFVTDQ-----------ERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENS 146 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~ 146 (294)
..+.|.++.++.|.+.+... -.-.+-+.|+|++|+|||||++.+.+.... ..+.+.........
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMY 84 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSST
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhh
Confidence 34678777777776654211 011233999999999999999988543221 01111111111111
Q ss_pred hHHHHH---HHHHHh-ccCCeEEEEccccCccc-------------hhhhcCCcCC--CCCCcEEEEecCChHHhh----
Q 048597 147 FEDKAL---DIAGIL-SRKRFVLLLDDIWEHIN-------------LNKLGVPLQY--LHLGSKIVFTTNSRVVCG---- 203 (294)
Q Consensus 147 ~~~~~~---~l~~~l-~~kr~LlvlDdv~~~~~-------------~~~l~~~l~~--~~~gs~iivTtr~~~v~~---- 203 (294)
...... .+.+.. ....+++++|++..... ...+...+.. .....-++.+|....+..
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~ 164 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAIL 164 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhc
Confidence 222222 222222 34578999999965210 0111111111 122334556666554311
Q ss_pred c-cCCce-eecCCCCHHHHHHHHHHHhC
Q 048597 204 Q-MEATM-LNASPLRDEEAWRLFEEAVG 229 (294)
Q Consensus 204 ~-~~~~~-~~l~~L~~~~~~~Lf~~~~~ 229 (294)
. ..... +.+...+.++-.++|+....
T Consensus 165 r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 165 RPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp STTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred CcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 1 13334 88888899888888887653
No 75
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.78 E-value=6.7e-05 Score=63.97 Aligned_cols=168 Identities=16% Similarity=0.082 Sum_probs=83.5
Q ss_pred CceeehhHHHHHHHHHHhcC---------C-CCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccC--
Q 048597 78 RTVIRQELLLDRVWRFVTDQ---------E-RNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQEN-- 145 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~---------~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~-- 145 (294)
..++|.+..+.++.+....- . .-.+-+.|+|++|+|||||++.+...... ..+.+........
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~-----~~i~~~~~~~~~~~~ 114 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGSDFVEMFV 114 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHHHHHHSTT
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC-----CEEEecHHHHHHHHh
Confidence 46788887666665544321 0 01223899999999999999998543210 0000000000000
Q ss_pred -ChHHHHHHHHHHh-ccCCeEEEEccccCc------------cch----hhhcCCcCCCC--CCcEEEEecCChHH----
Q 048597 146 -SFEDKALDIAGIL-SRKRFVLLLDDIWEH------------INL----NKLGVPLQYLH--LGSKIVFTTNSRVV---- 201 (294)
Q Consensus 146 -~~~~~~~~l~~~l-~~kr~LlvlDdv~~~------------~~~----~~l~~~l~~~~--~gs~iivTtr~~~v---- 201 (294)
........+.+.. .....++++|++... ..+ ..+...+.... ....++.+|.....
T Consensus 115 ~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~ 194 (278)
T 1iy2_A 115 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA 194 (278)
T ss_dssp THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHH
T ss_pred hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHh
Confidence 0111112222222 245689999999531 011 11211222221 22334455554433
Q ss_pred -hhccCCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCCh
Q 048597 202 -CGQMEATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLP 254 (294)
Q Consensus 202 -~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 254 (294)
........ +++...+.++-.+++...+.......... ...++..+.|..
T Consensus 195 l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 195 LLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp HHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred HcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccC----HHHHHHHcCCCC
Confidence 11112333 88888898888888887664322122222 246788888865
No 76
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.74 E-value=0.0001 Score=59.51 Aligned_cols=38 Identities=37% Similarity=0.314 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhcCCCC--ceEEEEEcCCCChHHHHHHHhh
Q 048597 85 LLLDRVWRFVTDQERN--RGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 85 ~~~~~l~~~L~~~~~~--~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..++.+..++...... ...+.|+|++|+||||||+.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~ 75 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIA 75 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHH
Confidence 3555666666654222 2789999999999999999884
No 77
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.72 E-value=0.00023 Score=69.25 Aligned_cols=168 Identities=13% Similarity=0.042 Sum_probs=90.9
Q ss_pred ceeehhHHHHHHHHHHhc----C-------CCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCC----CCcc
Q 048597 79 TVIRQELLLDRVWRFVTD----Q-------ERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLST----KSWQ 143 (294)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~----~~~~ 143 (294)
.+.|.++.+++|.+++.- . -..++-|.++||+|+|||+||+.+.+..... .+.+.. ..+.
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~-----~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGPEIMSKLA 279 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE-----EEEEEHHHHHSSCT
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe-----EEEEEhHHhhcccc
Confidence 467887777777666532 1 1356789999999999999999985432110 000000 0001
Q ss_pred cCChHHHHHHHHHHhccCCeEEEEccccCcc--------c-----hhhhcCCcC--CCCCCcEEEEecCChHH-hh---c
Q 048597 144 ENSFEDKALDIAGILSRKRFVLLLDDIWEHI--------N-----LNKLGVPLQ--YLHLGSKIVFTTNSRVV-CG---Q 204 (294)
Q Consensus 144 ~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~--------~-----~~~l~~~l~--~~~~gs~iivTtr~~~v-~~---~ 204 (294)
..+...+...+.......+++|+||++.... . ...+...+. ....+..||.||...+. -. .
T Consensus 280 gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR 359 (806)
T 3cf2_A 280 GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRR 359 (806)
T ss_dssp THHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTS
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhC
Confidence 1122223333333345678999999997521 1 111111111 11223345555554332 11 1
Q ss_pred -cCCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCChH
Q 048597 205 -MEATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLPL 255 (294)
Q Consensus 205 -~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl 255 (294)
..... +++...+.++-.++|..+..........++ ..|++.+.|+--
T Consensus 360 ~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl----~~lA~~T~Gfsg 408 (806)
T 3cf2_A 360 FGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHVG 408 (806)
T ss_dssp TTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCH----HHHHHHCCSCCH
T ss_pred CcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhcCCCCH
Confidence 12334 888888998888888876644332233333 567888888753
No 78
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.61 E-value=7.6e-05 Score=66.50 Aligned_cols=45 Identities=31% Similarity=0.227 Sum_probs=33.7
Q ss_pred CceeehhHHHHHHHHHHhc----------------------------CCCCceEEEEEcCCCChHHHHHHHhh
Q 048597 78 RTVIRQELLLDRVWRFVTD----------------------------QERNRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~----------------------------~~~~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..++|.+..++.|...+.. .......+.++|++|+|||++|+.+.
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la 93 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLA 93 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHH
Confidence 4578988888888777621 01134578999999999999999884
No 79
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.60 E-value=0.00019 Score=67.23 Aligned_cols=45 Identities=29% Similarity=0.364 Sum_probs=33.5
Q ss_pred CceeehhHHHHHHHHHHhc----CCCCceEEEEEcCCCChHHHHHHHhh
Q 048597 78 RTVIRQELLLDRVWRFVTD----QERNRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..++|.+.....+.+.+.- ......++.++|++|+||||||+.+.
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia 129 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIA 129 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHH
Confidence 4578888777777655432 12245689999999999999999983
No 80
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.57 E-value=0.00049 Score=67.46 Aligned_cols=168 Identities=13% Similarity=0.058 Sum_probs=88.2
Q ss_pred CceeehhHHHHHHHHHHhc-----------CCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCC----CCc
Q 048597 78 RTVIRQELLLDRVWRFVTD-----------QERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLST----KSW 142 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~----~~~ 142 (294)
..++|.+..+++|.+++.. .-.....|.|+|++|+||||||+.+.+..... .+.+.. ...
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~-----~i~v~~~~l~~~~ 278 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGPEIMSKL 278 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE-----EEEEEHHHHSSSS
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc-----EEEEEchHhhhhh
Confidence 3578988888888887753 11245689999999999999999984321100 000000 000
Q ss_pred ccCChHHHHHHHHHHhccCCeEEEEccccCcc--------c-----hhhhcCCcC--CCCCCcEEEEecCChH-Hhh---
Q 048597 143 QENSFEDKALDIAGILSRKRFVLLLDDIWEHI--------N-----LNKLGVPLQ--YLHLGSKIVFTTNSRV-VCG--- 203 (294)
Q Consensus 143 ~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~--------~-----~~~l~~~l~--~~~~gs~iivTtr~~~-v~~--- 203 (294)
.......+...+.........++++|++.... . ...+...+. ....+..+|.||.... +-.
T Consensus 279 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~ 358 (806)
T 1ypw_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALR 358 (806)
T ss_dssp TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTT
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHh
Confidence 01111222233333335567899999995311 0 111111111 1122345555555432 211
Q ss_pred c-cCCce-eecCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhCCCCh
Q 048597 204 Q-MEATM-LNASPLRDEEAWRLFEEAVGRYVLDSHPDIPELAKTMAEECCCLP 254 (294)
Q Consensus 204 ~-~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 254 (294)
. ..... +.+...+.++-.+++...+..........+ .+++..+.|..
T Consensus 359 r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l----~~la~~t~g~~ 407 (806)
T 1ypw_A 359 RFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHV 407 (806)
T ss_dssp STTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCT----HHHHHSCSSCC
T ss_pred cccccccccccCCCCHHHHHHHHHHHHhcCCCcccchh----HHHHHhhcCcc
Confidence 1 12223 778888999998988876644332222233 34555666654
No 81
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.50 E-value=6.4e-05 Score=73.30 Aligned_cols=46 Identities=22% Similarity=0.250 Sum_probs=35.6
Q ss_pred CceeehhHHHHHHHHHHhcC-------CCCceEEEEEcCCCChHHHHHHHhhC
Q 048597 78 RTVIRQELLLDRVWRFVTDQ-------ERNRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
..++|.+..++.+...+... ......+.++|++|+|||++|+.+..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 45789998888888777532 12334799999999999999998843
No 82
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.38 E-value=0.00082 Score=52.30 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=18.7
Q ss_pred eEEEEEcCCCChHHHHHHHh
Q 048597 102 GIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v 121 (294)
.+|.|.|++|+||||+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999988
No 83
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.35 E-value=0.00016 Score=58.84 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhCh
Q 048597 86 LLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANL 124 (294)
Q Consensus 86 ~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 124 (294)
..++|.+.+........+|+|+|++|+|||||++.+...
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344555555433335689999999999999999988443
No 84
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.33 E-value=0.00039 Score=68.70 Aligned_cols=44 Identities=32% Similarity=0.364 Sum_probs=34.6
Q ss_pred ceeehhHHHHHHHHHHhcC-------CCCceEEEEEcCCCChHHHHHHHhh
Q 048597 79 TVIRQELLLDRVWRFVTDQ-------ERNRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.++|.+..+..+...+... ......+.|+|++|+|||++|+.+.
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la 609 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLA 609 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHH
Confidence 4789998888888777542 1123589999999999999999884
No 85
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.32 E-value=0.00055 Score=56.07 Aligned_cols=21 Identities=33% Similarity=0.325 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-.++.|+|++|+|||||++.+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l 43 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHF 43 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHH
Confidence 369999999999999999998
No 86
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.32 E-value=7.3e-05 Score=64.38 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
.+..+.++|++|+|||+||+.+.+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457889999999999999998843
No 87
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.27 E-value=0.0014 Score=54.41 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l 51 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSAL 51 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3469999999999999999998
No 88
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.24 E-value=0.00031 Score=60.88 Aligned_cols=66 Identities=24% Similarity=0.313 Sum_probs=42.1
Q ss_pred ceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCC--C---CcccCChHHHHHHHHHHhccCCeEEEEccccC
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLST--K---SWQENSFEDKALDIAGILSRKRFVLLLDDIWE 172 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~--~---~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~ 172 (294)
.+++.|+|++|+||||||.++... ... ..+.++. . .....+.+.....+.+.+...+ +||+|++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~G~--~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---LGG--KDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR-VIVIDSLKN 193 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---HHT--TSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS-EEEEECCTT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---CCC--CEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC-EEEEecccc
Confidence 357789999999999999998542 100 1111111 0 0011345666666777777666 999999965
No 89
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.18 E-value=0.00047 Score=55.72 Aligned_cols=41 Identities=24% Similarity=0.284 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHhcC-CCCceEEEEEcCCCChHHHHHHHhhC
Q 048597 83 QELLLDRVWRFVTDQ-ERNRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 83 r~~~~~~l~~~L~~~-~~~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
|+..++.+.+.+... .....+|+|.|++|+|||||++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455677777777653 23567999999999999999988743
No 90
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.18 E-value=0.00014 Score=59.91 Aligned_cols=96 Identities=18% Similarity=0.040 Sum_probs=52.9
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC---------------h-hHHHHHHHHHhCCCCCCcccCChHHHHHHHHHHhccCCe
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN---------------L-KKIQADIGKKIGLSTKSWQENSFEDKALDIAGILSRKRF 163 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~---------------~-~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~ 163 (294)
.-.++.++|+.|+||||++..+.. . .+-...+..++++...........++...+.+.+...++
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~ 90 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDET 90 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCC
Confidence 347999999999999998877611 0 011112333333322222223334454555544444444
Q ss_pred -EEEEccccCc--cchhhhcCCcCCCCCCcEEEEecCC
Q 048597 164 -VLLLDDIWEH--INLNKLGVPLQYLHLGSKIVFTTNS 198 (294)
Q Consensus 164 -LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~ 198 (294)
+|++|++... +..+.+. .+.+ .|..||+|.+.
T Consensus 91 dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~ 125 (223)
T 2b8t_A 91 KVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIISGLD 125 (223)
T ss_dssp CEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCS
T ss_pred CEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEEecc
Confidence 9999999752 2333332 2222 26789999983
No 91
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.13 E-value=0.00069 Score=59.89 Aligned_cols=22 Identities=36% Similarity=0.635 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i 74 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCV 74 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEEcCCCchHHHHHHHH
Confidence 3479999999999999999998
No 92
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.01 E-value=0.00043 Score=60.37 Aligned_cols=41 Identities=27% Similarity=0.359 Sum_probs=35.3
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhh
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..++|++..+..+...+..+ .-+.++|++|+|||+||+.+.
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la 67 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLA 67 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHH
Confidence 46799999999988888765 578999999999999998873
No 93
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.00 E-value=0.00079 Score=57.79 Aligned_cols=25 Identities=24% Similarity=0.127 Sum_probs=21.8
Q ss_pred CCCceEEEEEcCCCChHHHHHHHhh
Q 048597 98 ERNRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 98 ~~~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.....+|+|+|++|+|||||++.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4467899999999999999998873
No 94
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.00 E-value=0.003 Score=55.14 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+++|+|++|+||||+++.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~L 149 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKL 149 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 5689999999999999999998
No 95
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.98 E-value=0.00018 Score=60.85 Aligned_cols=99 Identities=16% Similarity=0.136 Sum_probs=55.2
Q ss_pred CceEEEEEcCCCChHHHHHHHhhChhHHH--HHHH---HHhCCCCCC----c-c---cCChHHHHHHHHHHhccCCeEEE
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANLKKIQ--ADIG---KKIGLSTKS----W-Q---ENSFEDKALDIAGILSRKRFVLL 166 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~~~i~--~~i~---~~~~~~~~~----~-~---~~~~~~~~~~l~~~l~~kr~Llv 166 (294)
.-.+++|+|+.|+|||||++.+....... ..+. ..+...... . + ..+...+...+...|..++-+|+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~ill 103 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 103 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEE
Confidence 44799999999999999999885443221 0000 000000000 0 0 00112345567777777788999
Q ss_pred EccccCccchhhhcCCcCCCCCCcEEEEecCChHH
Q 048597 167 LDDIWEHINLNKLGVPLQYLHLGSKIVFTTNSRVV 201 (294)
Q Consensus 167 lDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v 201 (294)
+|+..+.+....+... ...|.-|++||...+.
T Consensus 104 lDEp~D~~~~~~~l~~---~~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 104 VGEMRDLETVETALRA---AETGHLVFGTLHTNTA 135 (261)
T ss_dssp ESCCCSHHHHHHHHHH---HHTTCEEEEEECCSSH
T ss_pred eCCCCCHHHHHHHHHH---HccCCEEEEEeCcchH
Confidence 9999754433332221 1236678888876554
No 96
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.94 E-value=0.00041 Score=55.04 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCChHHHHHHHhh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
-.+++|+|++|+|||||++.+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~ 26 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLI 26 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999884
No 97
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.93 E-value=0.00048 Score=54.86 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
...+++|+|++|+|||||++.+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 347899999999999999999843
No 98
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.92 E-value=0.00074 Score=62.38 Aligned_cols=42 Identities=10% Similarity=0.107 Sum_probs=36.7
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhC
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
..++|.+..++.+...+..+ .-|.++|++|+|||+||+.+..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGG
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHH
Confidence 56799999999888888776 5789999999999999999854
No 99
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.92 E-value=0.0015 Score=57.66 Aligned_cols=21 Identities=43% Similarity=0.752 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-.+++|+|++|+|||||++.+
T Consensus 41 Ge~~~llGpnGsGKSTLLr~i 61 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLI 61 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHH
Confidence 479999999999999999998
No 100
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.92 E-value=0.00095 Score=57.70 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll 100 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLL 100 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCchHHHHHHHH
Confidence 4579999999999999999998
No 101
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.91 E-value=0.001 Score=59.18 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~i 49 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMI 49 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEEcCCCchHHHHHHHH
Confidence 3479999999999999999999
No 102
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.90 E-value=0.00076 Score=59.68 Aligned_cols=45 Identities=33% Similarity=0.236 Sum_probs=34.8
Q ss_pred CceeehhHHHHHHHHHHhc-------------CCCCceEEEEEcCCCChHHHHHHHhh
Q 048597 78 RTVIRQELLLDRVWRFVTD-------------QERNRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~-------------~~~~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..++|.+..++.+...+.. .......+.++|++|+|||++|+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia 72 (363)
T 3hws_A 15 DYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA 72 (363)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHH
Confidence 3478999988888887731 11134679999999999999999884
No 103
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.86 E-value=0.00045 Score=55.07 Aligned_cols=21 Identities=43% Similarity=0.536 Sum_probs=19.1
Q ss_pred eEEEEEcCCCChHHHHHHHhh
Q 048597 102 GIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~ 122 (294)
++++|+|++|+|||||++.+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~ 22 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999998884
No 104
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.86 E-value=0.0019 Score=57.07 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~i 49 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTI 49 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCchHHHHHHHH
Confidence 3479999999999999999998
No 105
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.85 E-value=0.00052 Score=55.26 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCChHHHHHHHhhC
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
..+++|+|++|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 36899999999999999998844
No 106
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.85 E-value=0.0021 Score=56.56 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~i 46 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELI 46 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHH
Confidence 3469999999999999999999
No 107
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.85 E-value=0.002 Score=56.88 Aligned_cols=99 Identities=14% Similarity=0.123 Sum_probs=59.6
Q ss_pred ceEEEEEcCCCChHHHHHHHhhChhHHH--HHHHH-----HhCCCCC-----C-cccCChHHHHHHHHHHhccCCeEEEE
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRANLKKIQ--ADIGK-----KIGLSTK-----S-WQENSFEDKALDIAGILSRKRFVLLL 167 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~~~~~i~--~~i~~-----~~~~~~~-----~-~~~~~~~~~~~~l~~~l~~kr~Llvl 167 (294)
..+++|+|+.|+|||||++.+.+..... ..+.. .+..... . ............+...|...+=+|++
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvill 202 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILV 202 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEec
Confidence 3599999999999999999884433221 00000 0000000 0 00111233555788888999999999
Q ss_pred ccccCccchhhhcCCcCCCCCCcEEEEecCChHHh
Q 048597 168 DDIWEHINLNKLGVPLQYLHLGSKIVFTTNSRVVC 202 (294)
Q Consensus 168 Ddv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 202 (294)
|++.+.+.+..+... ...|..+++|+...+.+
T Consensus 203 DEp~d~e~~~~~~~~---~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 203 GEMRDLETIRLALTA---AETGHLVFGTLHTTSAA 234 (356)
T ss_dssp SCCCSHHHHHHHHHH---HHTTCEEEEEESCSSHH
T ss_pred CCCCCHHHHHHHHHH---HhcCCEEEEEEccChHH
Confidence 999876665544332 22366788888876654
No 108
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.82 E-value=0.0006 Score=54.11 Aligned_cols=23 Identities=43% Similarity=0.476 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHhhChh
Q 048597 103 IIGLYGTGGVGKTTLLKQRANLK 125 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v~~~~ 125 (294)
.++|+|++|+|||||++.+....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999985443
No 109
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.78 E-value=0.00056 Score=53.52 Aligned_cols=20 Identities=40% Similarity=0.388 Sum_probs=18.9
Q ss_pred eEEEEEcCCCChHHHHHHHh
Q 048597 102 GIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v 121 (294)
.+|+|+|++|+|||||++.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~L 24 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQL 24 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 57999999999999999988
No 110
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.78 E-value=0.00069 Score=53.24 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.8
Q ss_pred CceEEEEEcCCCChHHHHHHH
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQ 120 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~ 120 (294)
...+++|+|++|+|||||++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 347999999999999999994
No 111
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.78 E-value=0.00067 Score=52.87 Aligned_cols=20 Identities=25% Similarity=0.149 Sum_probs=18.3
Q ss_pred eEEEEEcCCCChHHHHHHHh
Q 048597 102 GIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v 121 (294)
.+|.|.|++|+||||+++.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L 21 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKL 21 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999877
No 112
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.76 E-value=0.00058 Score=55.09 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCChHHHHHHHhhC
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
.++++|+|++|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999988844
No 113
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.76 E-value=0.0008 Score=54.20 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
...+|.|+|++|+|||||++.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999998844
No 114
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.76 E-value=0.00075 Score=54.71 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998844
No 115
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.76 E-value=0.00075 Score=53.03 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=18.9
Q ss_pred eEEEEEcCCCChHHHHHHHh
Q 048597 102 GIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v 121 (294)
.+|.|.|++|+||||+++.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~L 23 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCL 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999998
No 116
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.75 E-value=0.00071 Score=54.86 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCChHHHHHHHhhCh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANL 124 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~ 124 (294)
.-.+++|+|++|+|||||++.+...
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3479999999999999999988543
No 117
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.71 E-value=0.00086 Score=54.46 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...+|+|+||+|+|||||++.+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~ 29 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVF 29 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHH
Confidence 45799999999999999999883
No 118
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.71 E-value=0.00085 Score=53.39 Aligned_cols=21 Identities=38% Similarity=0.485 Sum_probs=19.2
Q ss_pred eEEEEEcCCCChHHHHHHHhh
Q 048597 102 GIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.+++|+|++|+|||||++.+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHh
Confidence 578999999999999999983
No 119
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.70 E-value=0.0011 Score=52.03 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+|+|+|++|+||||+++.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l 28 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEV 28 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHH
Confidence 3578999999999999999987
No 120
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.69 E-value=0.00086 Score=54.02 Aligned_cols=22 Identities=27% Similarity=0.361 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+|+|+|++|+|||||++.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L 49 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGV 49 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999998
No 121
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.69 E-value=0.0016 Score=56.68 Aligned_cols=41 Identities=22% Similarity=0.226 Sum_probs=28.5
Q ss_pred eehhHHHHHHHHHHhcC--CCCceEEEEEcCCCChHHHHHHHh
Q 048597 81 IRQELLLDRVWRFVTDQ--ERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 81 vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
+|-...+..+...+... ...+.+|+|.|++|+|||||++.+
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L 112 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVL 112 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHH
Confidence 44444444444444433 345679999999999999999888
No 122
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.69 E-value=0.00091 Score=52.50 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=19.7
Q ss_pred eEEEEEcCCCChHHHHHHHhhC
Q 048597 102 GIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
.+|.|.|++|+||||+++.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5899999999999999998854
No 123
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.68 E-value=0.0009 Score=53.85 Aligned_cols=22 Identities=45% Similarity=0.234 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+|.|+|++|+||||+++.+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~L 45 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAF 45 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHH
Confidence 3469999999999999999998
No 124
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.65 E-value=0.001 Score=53.52 Aligned_cols=22 Identities=41% Similarity=0.427 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCChHHHHHHHhh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..+|+|+|++|+|||||++.+.
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~ 27 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIF 27 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999883
No 125
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.63 E-value=0.0011 Score=51.56 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
.-.+++|+|+.|+|||||++.+..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999988743
No 126
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.61 E-value=0.00085 Score=54.99 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCChHHHHHHHhhC
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
-.+++|+|++|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 47899999999999999998854
No 127
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.57 E-value=0.0023 Score=53.27 Aligned_cols=38 Identities=24% Similarity=0.144 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHh
Q 048597 84 ELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 84 ~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+.++.............|.|.|++|+||||+++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L 49 (243)
T 3tlx_A 12 IDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNL 49 (243)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHH
Confidence 33444444444433335679999999999999999988
No 128
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.56 E-value=0.0011 Score=55.02 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l 51 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNII 51 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHH
Confidence 3479999999999999999998
No 129
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.56 E-value=0.011 Score=51.10 Aligned_cols=38 Identities=24% Similarity=0.233 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHhcC------CCCceEEEEEcCCCChHHHHHHHh
Q 048597 84 ELLLDRVWRFVTDQ------ERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 84 ~~~~~~l~~~L~~~------~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
+...+++.+.+... .....+|.|+|++|+||||++..+
T Consensus 81 ~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~L 124 (306)
T 1vma_A 81 ESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKL 124 (306)
T ss_dssp HHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHH
Confidence 33455566665432 124679999999999999999988
No 130
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.56 E-value=0.00096 Score=53.72 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
..+|.|.|++|+||||+++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L 38 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAI 38 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999988
No 131
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.56 E-value=0.0013 Score=57.12 Aligned_cols=23 Identities=35% Similarity=0.349 Sum_probs=20.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHh
Q 048597 99 RNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 99 ~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
....+|+|+|++|+|||||++.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L 110 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVL 110 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHH
Confidence 35679999999999999999988
No 132
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.55 E-value=0.0011 Score=54.33 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.-.+++|+||+|+|||||++.+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~ 37 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALL 37 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 34799999999999999999883
No 133
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.55 E-value=0.0012 Score=54.98 Aligned_cols=22 Identities=27% Similarity=0.227 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCChHHHHHHHhh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..+|+|+|++|+|||||++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 5799999999999999999985
No 134
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.54 E-value=0.0096 Score=51.14 Aligned_cols=21 Identities=38% Similarity=0.387 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
..+++++|++|+||||++..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~l 118 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKL 118 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 579999999999999999888
No 135
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.54 E-value=0.0014 Score=54.67 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
...+|+|.|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998843
No 136
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.54 E-value=0.0013 Score=54.81 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
. .+++|+|++|+|||||++.+
T Consensus 24 ~-e~~~liG~nGsGKSTLl~~l 44 (240)
T 2onk_A 24 R-DYCVLLGPTGAGKSVFLELI 44 (240)
T ss_dssp S-SEEEEECCTTSSHHHHHHHH
T ss_pred C-EEEEEECCCCCCHHHHHHHH
Confidence 5 89999999999999999999
No 137
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.53 E-value=0.0013 Score=52.10 Aligned_cols=21 Identities=38% Similarity=0.279 Sum_probs=19.3
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
.+.|.|+|++|+||||+++.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~L 25 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQL 25 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999988
No 138
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.51 E-value=0.0011 Score=53.47 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...+|.|+|++|+|||||++.+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~ 33 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVL 33 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999998873
No 139
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.51 E-value=0.0026 Score=54.40 Aligned_cols=22 Identities=32% Similarity=0.280 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+|.|.|++|+||||+++.+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L 53 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAI 53 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 5679999999999999999988
No 140
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.51 E-value=0.0016 Score=53.03 Aligned_cols=23 Identities=35% Similarity=0.322 Sum_probs=21.1
Q ss_pred eEEEEEcCCCChHHHHHHHhhCh
Q 048597 102 GIIGLYGTGGVGKTTLLKQRANL 124 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~~~ 124 (294)
.+++|+|++|+|||||++.+...
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999655
No 141
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.50 E-value=0.0012 Score=54.32 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-.+++|+|++|+|||||++.+
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l 50 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYIL 50 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 469999999999999999998
No 142
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.50 E-value=0.0015 Score=51.86 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+|.|.|++|+||||+++.+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L 25 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQAL 25 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3578999999999999999988
No 143
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.49 E-value=0.0013 Score=53.77 Aligned_cols=20 Identities=40% Similarity=0.554 Sum_probs=19.0
Q ss_pred eEEEEEcCCCChHHHHHHHh
Q 048597 102 GIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v 121 (294)
.+|+|+|++|+||||+++.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L 25 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAM 25 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999998
No 144
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.48 E-value=0.0015 Score=52.61 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..++|.|+||+|+|||||++.+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~ 40 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALL 40 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHH
Confidence 45789999999999999998874
No 145
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.46 E-value=0.0017 Score=52.49 Aligned_cols=24 Identities=42% Similarity=0.497 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
...+|+|+|++|+|||||++.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999843
No 146
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.44 E-value=0.0016 Score=52.56 Aligned_cols=20 Identities=45% Similarity=0.514 Sum_probs=18.9
Q ss_pred eEEEEEcCCCChHHHHHHHh
Q 048597 102 GIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v 121 (294)
.+|+|+|+.|+||||+++.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999998
No 147
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.44 E-value=0.0015 Score=51.71 Aligned_cols=20 Identities=40% Similarity=0.449 Sum_probs=18.6
Q ss_pred eEEEEEcCCCChHHHHHHHh
Q 048597 102 GIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v 121 (294)
.+|.|.|++|+||||+++.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L 21 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKV 21 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999988
No 148
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.44 E-value=0.0012 Score=57.76 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=31.7
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhC
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
..++|.+..+..+...+... ...-+.|+|++|+|||+||+.+.+
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~--~~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCC--CCceEEEECCCCccHHHHHHHHHH
Confidence 35899988666554444432 234599999999999999998843
No 149
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.42 E-value=0.0014 Score=52.41 Aligned_cols=20 Identities=45% Similarity=0.601 Sum_probs=17.7
Q ss_pred eEEEEEcCCCChHHHHHHHh
Q 048597 102 GIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v 121 (294)
+.|.|+||+|+|||||++.+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L 21 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKL 21 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 45889999999999999776
No 150
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.41 E-value=0.0015 Score=55.53 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-.+++|+|++|+|||||++.+
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l 54 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNF 54 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 479999999999999999998
No 151
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.41 E-value=0.0045 Score=54.54 Aligned_cols=73 Identities=19% Similarity=0.259 Sum_probs=43.8
Q ss_pred CceEEEEEcCCCChHHHHHHHhhChhH--------------HHHHHHHHhCCCCCCc---ccCChHHHHHHHHHHhc-cC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANLKK--------------IQADIGKKIGLSTKSW---QENSFEDKALDIAGILS-RK 161 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~~~--------------i~~~i~~~~~~~~~~~---~~~~~~~~~~~l~~~l~-~k 161 (294)
.-.++.|.|++|+|||||+..+..... .....+.+++...... ...+.++....+...++ .+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~ 139 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGV 139 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcC
Confidence 347999999999999999998821110 1112445555432211 12345555555555443 45
Q ss_pred CeEEEEccccC
Q 048597 162 RFVLLLDDIWE 172 (294)
Q Consensus 162 r~LlvlDdv~~ 172 (294)
.-++|+|.+..
T Consensus 140 ~dlvVIDSi~~ 150 (356)
T 3hr8_A 140 VDLIVVDSVAA 150 (356)
T ss_dssp CSEEEEECTTT
T ss_pred CCeEEehHhhh
Confidence 66899998754
No 152
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.41 E-value=0.0015 Score=52.51 Aligned_cols=20 Identities=40% Similarity=0.502 Sum_probs=18.5
Q ss_pred eEEEEEcCCCChHHHHHHHh
Q 048597 102 GIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v 121 (294)
.+|+|+|+.|+||||+++.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L 21 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMF 21 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHH
Confidence 47999999999999999987
No 153
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.41 E-value=0.0018 Score=51.84 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
+..+|+|.|+.|+||||+++.+
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~L 28 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALL 28 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHH
Confidence 5679999999999999999987
No 154
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.41 E-value=0.0016 Score=55.07 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l 52 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCI 52 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999999
No 155
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.40 E-value=0.0016 Score=51.53 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=19.2
Q ss_pred eEEEEEcCCCChHHHHHHHhh
Q 048597 102 GIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.+|.|.|++|+||||+++.+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999983
No 156
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.40 E-value=0.0016 Score=54.01 Aligned_cols=22 Identities=36% Similarity=0.376 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i 50 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHH
Confidence 3479999999999999999987
No 157
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.40 E-value=0.0018 Score=55.87 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+++|+|++|+|||||++.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~L 122 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKL 122 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHH
Confidence 4579999999999999999998
No 158
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.39 E-value=0.0016 Score=51.39 Aligned_cols=22 Identities=55% Similarity=0.406 Sum_probs=19.6
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+|.|+|++|+||||+++.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l 31 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKEL 31 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHH
Confidence 3467899999999999999988
No 159
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.38 E-value=0.0011 Score=50.95 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCChHHHHHHHhhChh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANLK 125 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 125 (294)
....+.|+|++|+|||||++.+.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999986543
No 160
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.38 E-value=0.0017 Score=54.69 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-.+++|+|++|+|||||++.+
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l 53 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVI 53 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 469999999999999999998
No 161
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.36 E-value=0.0017 Score=54.96 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l 57 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLL 57 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHH
Confidence 3479999999999999999999
No 162
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.35 E-value=0.0031 Score=51.26 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhh
Q 048597 83 QELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 83 r~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.++..+.+...+... ...+|.|+|.+|+|||||+..+.
T Consensus 14 ~~~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~ 51 (221)
T 2wsm_A 14 NKRLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTI 51 (221)
T ss_dssp HHHHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHH
T ss_pred cHHHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHH
Confidence 344455555555444 67899999999999999988774
No 163
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.35 E-value=0.0011 Score=54.55 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=16.1
Q ss_pred ceEEEEEcCCCChHHHHHHHhh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
-.+++|+|++|+|||||++.+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999998886
No 164
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.35 E-value=0.0018 Score=53.93 Aligned_cols=21 Identities=43% Similarity=0.582 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-.+++|+|++|+|||||++.+
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l 52 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAI 52 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 469999999999999999999
No 165
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.35 E-value=0.0018 Score=52.87 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l 45 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTL 45 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999988
No 166
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.34 E-value=0.0042 Score=50.65 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
....|.|+|.+|+|||||+..+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l 58 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKL 58 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 6789999999999999999887
No 167
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.33 E-value=0.0019 Score=51.77 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=18.2
Q ss_pred EEEEEcCCCChHHHHHHHhh
Q 048597 103 IIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v~ 122 (294)
.|.|.|+.|+||||+++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~ 21 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEIS 21 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHH
Confidence 68999999999999998873
No 168
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.33 E-value=0.0018 Score=54.64 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l 70 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCL 70 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEEcCCCCcHHHHHHHH
Confidence 4479999999999999999999
No 169
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.32 E-value=0.002 Score=54.08 Aligned_cols=20 Identities=30% Similarity=0.287 Sum_probs=18.6
Q ss_pred eEEEEEcCCCChHHHHHHHh
Q 048597 102 GIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v 121 (294)
.+|.|.|++|+||||||+.+
T Consensus 2 ~li~I~G~~GSGKSTla~~L 21 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQI 21 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHH
Confidence 47899999999999999987
No 170
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.32 E-value=0.0017 Score=52.07 Aligned_cols=25 Identities=40% Similarity=0.533 Sum_probs=21.3
Q ss_pred eEEEEEcCCCChHHHHHHHhhChhH
Q 048597 102 GIIGLYGTGGVGKTTLLKQRANLKK 126 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~~~~~ 126 (294)
.+++|+|++|+|||||++.+.....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999866544
No 171
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.32 E-value=0.0021 Score=51.02 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=19.3
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
..+|.|.|++|+||||+++.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L 23 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARI 23 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999987
No 172
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.32 E-value=0.0019 Score=53.33 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-.+++|+|++|+|||||++.+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l 54 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMI 54 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 469999999999999999998
No 173
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.31 E-value=0.0017 Score=53.12 Aligned_cols=21 Identities=43% Similarity=0.733 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-.+++|+|++|+|||||++.+
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l 55 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTI 55 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 368999999999999999998
No 174
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.31 E-value=0.0017 Score=50.92 Aligned_cols=20 Identities=35% Similarity=0.360 Sum_probs=18.5
Q ss_pred eEEEEEcCCCChHHHHHHHh
Q 048597 102 GIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v 121 (294)
..|.|.|++|+||||+++.+
T Consensus 5 ~~i~i~G~~GsGKsTla~~L 24 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARAL 24 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHH
Confidence 46899999999999999998
No 175
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.30 E-value=0.0048 Score=54.17 Aligned_cols=44 Identities=23% Similarity=0.424 Sum_probs=31.5
Q ss_pred eehhHHHHHHHHHHhc--CCCCceEEEEEcCCCChHHHHHHHhhCh
Q 048597 81 IRQELLLDRVWRFVTD--QERNRGIIGLYGTGGVGKTTLLKQRANL 124 (294)
Q Consensus 81 vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 124 (294)
+..+.-.+.++..+.. .+.....|.|+|++|+||||+++.+...
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 4455566667666643 2235667999999999999999988443
No 176
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.30 E-value=0.0025 Score=51.16 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+|.|.|+.|+||||+++.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L 35 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKL 35 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 5679999999999999999888
No 177
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.29 E-value=0.0029 Score=59.94 Aligned_cols=40 Identities=25% Similarity=0.269 Sum_probs=34.9
Q ss_pred CceeehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHh
Q 048597 78 RTVIRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
..++|.+..++.+...+..+ ..+.|+|++|+||||||+.+
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~i 80 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAM 80 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHH
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHH
Confidence 45799998888888777766 68999999999999999998
No 178
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.29 E-value=0.002 Score=53.96 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCChHHHHHHHhhC
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
-.+++|+|++|+|||||++.+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46999999999999999999844
No 179
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.29 E-value=0.0021 Score=53.58 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l 48 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLL 48 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999999
No 180
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.29 E-value=0.002 Score=53.85 Aligned_cols=21 Identities=43% Similarity=0.662 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-.+++|+|++|+|||||++.+
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l 55 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLI 55 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 469999999999999999999
No 181
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.28 E-value=0.0023 Score=50.75 Aligned_cols=23 Identities=35% Similarity=0.330 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
....|.|+|+.|+||||+++.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La 31 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIA 31 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999874
No 182
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.28 E-value=0.019 Score=50.05 Aligned_cols=162 Identities=12% Similarity=-0.004 Sum_probs=93.9
Q ss_pred HHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCcccCChHHHHHHHHHH-hccCCeEEEEc
Q 048597 90 VWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSWQENSFEDKALDIAGI-LSRKRFVLLLD 168 (294)
Q Consensus 90 l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlvlD 168 (294)
+.+.+.. .-.++..++|+.|.||++.+..+.....-. .+......... ...+..++.+.+... +-+.+-++++|
T Consensus 9 l~~~l~~--~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~--~~~~~~~l~~~~~~~plf~~~kvvii~ 83 (343)
T 1jr3_D 9 LRAQLNE--GLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSID--PNTDWNAIFSLCQAMSLFASRQTLLLL 83 (343)
T ss_dssp HHHHHHH--CCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECC--TTCCHHHHHHHHHHHHHCCSCEEEEEE
T ss_pred HHHHHhc--CCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEec--CCCCHHHHHHHhcCcCCccCCeEEEEE
Confidence 4444542 256799999999999999987774321100 00000001011 124455555444322 34667788999
Q ss_pred cccC---ccchhhhcCCcCCCCCCcEEEEecCC-------hHHhhc-cC-CceeecCCCCHHHHHHHHHHHhCCCCCCCC
Q 048597 169 DIWE---HINLNKLGVPLQYLHLGSKIVFTTNS-------RVVCGQ-ME-ATMLNASPLRDEEAWRLFEEAVGRYVLDSH 236 (294)
Q Consensus 169 dv~~---~~~~~~l~~~l~~~~~gs~iivTtr~-------~~v~~~-~~-~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 236 (294)
+++. ...++.+...+.....++.+|+++.. ..+... .. +..++..+++.++....+.+.+...+...+
T Consensus 84 ~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g~~i~ 163 (343)
T 1jr3_D 84 LPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELD 163 (343)
T ss_dssp CCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHTTCEEC
T ss_pred CCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHcCCCCC
Confidence 9865 34556665555444446667666543 123222 22 233899999999998888877643332222
Q ss_pred CCHHHHHHHHHHhCCCChHHHHH
Q 048597 237 PDIPELAKTMAEECCCLPLALKT 259 (294)
Q Consensus 237 ~~~~~~~~~I~~~c~GlPlai~~ 259 (294)
.+....+++.++|.+..+..
T Consensus 164 ---~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 164 ---DAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp ---HHHHHHHHHSSTTCHHHHHH
T ss_pred ---HHHHHHHHHHhchHHHHHHH
Confidence 25568889999998877765
No 183
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.27 E-value=0.0023 Score=53.63 Aligned_cols=23 Identities=39% Similarity=0.446 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...+|+|+|++|+|||||++.+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34699999999999999999984
No 184
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.27 E-value=0.0021 Score=54.10 Aligned_cols=22 Identities=45% Similarity=0.662 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l 61 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRII 61 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3469999999999999999999
No 185
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.27 E-value=0.0023 Score=50.90 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+|.|.|+.|+||||+++.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L 29 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKI 29 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999988
No 186
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.27 E-value=0.0024 Score=50.43 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=19.3
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
..+|.|.|++|+||||+++.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~L 24 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRL 24 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 368999999999999999988
No 187
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.25 E-value=0.0035 Score=52.44 Aligned_cols=36 Identities=33% Similarity=0.363 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcC---CCCceEEEEEcCCCChHHHHHHHh
Q 048597 86 LLDRVWRFVTDQ---ERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 86 ~~~~l~~~L~~~---~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
..+++...+..+ .....+|.|+|++|+||||+++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L 52 (253)
T 2p5t_B 14 ALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIK 52 (253)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHH
T ss_pred HHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHH
Confidence 344444444432 234679999999999999999987
No 188
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.25 E-value=0.0018 Score=51.12 Aligned_cols=20 Identities=30% Similarity=0.311 Sum_probs=18.5
Q ss_pred eEEEEEcCCCChHHHHHHHh
Q 048597 102 GIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v 121 (294)
.+|.|.|++|+||||+++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRL 22 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 46999999999999999988
No 189
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.24 E-value=0.0024 Score=50.09 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=19.5
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...++.|+|+.|+|||||+..+.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~ 25 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWV 25 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999987763
No 190
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.24 E-value=0.0022 Score=53.68 Aligned_cols=21 Identities=43% Similarity=0.659 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-.+++|+|++|+|||||++.+
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l 46 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARM 46 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHH
Confidence 368999999999999999998
No 191
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.24 E-value=0.0022 Score=54.30 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.-.+++|+|++|+|||||++.+.
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~ 67 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLA 67 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34699999999999999999983
No 192
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.23 E-value=0.0023 Score=54.00 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l 66 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLL 66 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3469999999999999999999
No 193
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.22 E-value=0.0023 Score=54.33 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l 65 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALL 65 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3469999999999999999999
No 194
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.22 E-value=0.0025 Score=55.06 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
...+|+|+|+.|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 557999999999999999998843
No 195
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.21 E-value=0.0026 Score=54.84 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+++|+|++|+||||+++.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~L 120 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKL 120 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHH
Confidence 4579999999999999999998
No 196
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.20 E-value=0.0023 Score=54.51 Aligned_cols=22 Identities=45% Similarity=0.534 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l 67 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNIL 67 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHH
Confidence 3469999999999999999998
No 197
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.20 E-value=0.0015 Score=51.42 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=19.6
Q ss_pred eEEEEEcCCCChHHHHHHHhhC
Q 048597 102 GIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
.+++|+|++|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999988744
No 198
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.19 E-value=0.0024 Score=54.03 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i 53 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIV 53 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHH
Confidence 3469999999999999999998
No 199
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.18 E-value=0.0024 Score=53.59 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-.+++|+|++|+|||||++.+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l 51 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLL 51 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 368999999999999999998
No 200
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.17 E-value=0.023 Score=51.36 Aligned_cols=22 Identities=41% Similarity=0.305 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+|.++|++|+||||++..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kL 117 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKL 117 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4689999999999999998887
No 201
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.17 E-value=0.0023 Score=49.90 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=18.6
Q ss_pred eEEEEEcCCCChHHHHHHHh
Q 048597 102 GIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v 121 (294)
.+|.|.|+.|+||||+++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGREL 22 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 47999999999999999988
No 202
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.17 E-value=0.0029 Score=50.95 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=19.3
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
..+|.|.|+.|+||||+++.+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L 24 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLL 24 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHH
Confidence 368999999999999999988
No 203
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.17 E-value=0.0032 Score=50.58 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+|.|.|++|+||||+++.+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~L 40 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKL 40 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4568999999999999999988
No 204
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.16 E-value=0.0026 Score=50.75 Aligned_cols=21 Identities=33% Similarity=0.314 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
..+|.|.|++|+||||+++.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L 32 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKL 32 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 368999999999999999988
No 205
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.15 E-value=0.0032 Score=49.90 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...+|.|.|++|+||||+++.+.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 45789999999999999999883
No 206
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.15 E-value=0.011 Score=55.63 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l 389 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLF 389 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4479999999999999999998
No 207
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.14 E-value=0.0028 Score=49.24 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+|.|.|+.|+||||+++.+
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~L 27 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQEL 27 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999998
No 208
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.13 E-value=0.0064 Score=53.60 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHh
Q 048597 87 LDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 87 ~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+...+.....+..+|+|+|.+|+|||||+..+
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L 99 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEAL 99 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHH
Confidence 44555555544447789999999999999999887
No 209
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.13 E-value=0.003 Score=53.14 Aligned_cols=22 Identities=45% Similarity=0.455 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCChHHHHHHHhh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..+|.|.|++|+||||+++.+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La 25 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLA 25 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHH
Confidence 4689999999999999999874
No 210
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.13 E-value=0.0058 Score=52.78 Aligned_cols=41 Identities=27% Similarity=0.385 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHhcCCC-CceEEEEEcCCCChHHHHHHHhhC
Q 048597 83 QELLLDRVWRFVTDQER-NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 83 r~~~~~~l~~~L~~~~~-~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
+......+.+++..... ....+.|+|++|+|||+||..+.+
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 34455566666665322 247889999999999999988854
No 211
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.12 E-value=0.0053 Score=57.85 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l 387 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLI 387 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTT
T ss_pred CCCEEEEECCCCChHHHHHHHH
Confidence 4579999999999999999998
No 212
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.10 E-value=0.0031 Score=49.92 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+|.|.|+.|+||||+++.+
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L 26 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANI 26 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHH
Confidence 3468999999999999999988
No 213
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.10 E-value=0.0032 Score=56.66 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
...+++|+|++|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 457999999999999999999854
No 214
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.08 E-value=0.002 Score=50.72 Aligned_cols=21 Identities=38% Similarity=0.366 Sum_probs=15.5
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
..+|.|.|+.|+||||+++.+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~L 25 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTL 25 (183)
T ss_dssp CCEEEEECCC----CHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999988
No 215
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.07 E-value=0.0034 Score=52.47 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+|+|.|+.|+||||+++.+
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L 42 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKI 42 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHH
Confidence 5679999999999999999887
No 216
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.07 E-value=0.0048 Score=55.94 Aligned_cols=44 Identities=25% Similarity=0.249 Sum_probs=34.1
Q ss_pred CceeehhHHHHHHHHHHhcC------------CCCceEEEEEcCCCChHHHHHHHh
Q 048597 78 RTVIRQELLLDRVWRFVTDQ------------ERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
..++|.+..+..+...+... +...+-|.++|++|+||||+|+.+
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~l 70 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRL 70 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHH
Confidence 46789888888887766331 113467999999999999999988
No 217
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.06 E-value=0.0032 Score=48.79 Aligned_cols=19 Identities=32% Similarity=0.113 Sum_probs=18.0
Q ss_pred EEEEEcCCCChHHHHHHHh
Q 048597 103 IIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v 121 (294)
.|.|.|+.|+||||+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLL 20 (168)
T ss_dssp EEEEESCTTSCHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 6899999999999999988
No 218
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.06 E-value=0.0033 Score=51.28 Aligned_cols=22 Identities=27% Similarity=0.220 Sum_probs=19.8
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
....|.|.|+.|+||||+++.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~L 24 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNL 24 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3468999999999999999988
No 219
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.06 E-value=0.019 Score=54.14 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l 389 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLI 389 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999998
No 220
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.06 E-value=0.0037 Score=51.17 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
..++|.|.|++|+||||.|+.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L 49 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKL 49 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 6789999999999999999988
No 221
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.06 E-value=0.0032 Score=49.92 Aligned_cols=19 Identities=42% Similarity=0.576 Sum_probs=17.9
Q ss_pred EEEEEcCCCChHHHHHHHh
Q 048597 103 IIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v 121 (294)
+|+|.|+.|+||||+++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L 20 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKL 20 (195)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999888
No 222
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.04 E-value=0.0058 Score=59.48 Aligned_cols=87 Identities=22% Similarity=0.213 Sum_probs=52.0
Q ss_pred CceeehhHHHHHHHHHHhcC-----------CCCceEEEEEcCCCChHHHHHHHhhChhH-----HH-HHHHHHhCCCCC
Q 048597 78 RTVIRQELLLDRVWRFVTDQ-----------ERNRGIIGLYGTGGVGKTTLLKQRANLKK-----IQ-ADIGKKIGLSTK 140 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-----i~-~~i~~~~~~~~~ 140 (294)
..+.|.++.+++|.+.+.-. -...+-|.++||+|+|||.||+.+.+... +. ..+...
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~------ 550 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM------ 550 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT------
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcc------
Confidence 34678888777777665432 12456788999999999999999832221 11 011110
Q ss_pred CcccCChHHHHHHHHHHh-ccCCeEEEEccccC
Q 048597 141 SWQENSFEDKALDIAGIL-SRKRFVLLLDDIWE 172 (294)
Q Consensus 141 ~~~~~~~~~~~~~l~~~l-~~kr~LlvlDdv~~ 172 (294)
+...+.. ....+++.- +..+++|++|++..
T Consensus 551 -~vGese~-~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 551 -WFGESEA-NVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp -TCSSCHH-HHHHHHHHHHTTCSEEEECSCGGG
T ss_pred -ccchHHH-HHHHHHHHHHHcCCceeechhhhH
Confidence 1122333 333444433 46789999999865
No 223
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.03 E-value=0.0069 Score=53.84 Aligned_cols=35 Identities=17% Similarity=0.080 Sum_probs=25.5
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhC
Q 048597 89 RVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 89 ~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
.+++-+.-.-....+++|+|++|+|||||++.+..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 33443433333557999999999999999998864
No 224
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.01 E-value=0.0035 Score=50.56 Aligned_cols=22 Identities=27% Similarity=0.193 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+|.|.|+.|+||||+++.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L 30 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLL 30 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHH
Confidence 3468999999999999999988
No 225
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.01 E-value=0.0037 Score=50.48 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
..+|.|.|+.|+||||+++.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L 29 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKL 29 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999988
No 226
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.01 E-value=0.0092 Score=47.84 Aligned_cols=47 Identities=13% Similarity=0.069 Sum_probs=27.4
Q ss_pred HHHHhccCC-eEEEEccccCc-----cchhhhcCCcCCCCCCcEEEEecCChH
Q 048597 154 IAGILSRKR-FVLLLDDIWEH-----INLNKLGVPLQYLHLGSKIVFTTNSRV 200 (294)
Q Consensus 154 l~~~l~~kr-~LlvlDdv~~~-----~~~~~l~~~l~~~~~gs~iivTtr~~~ 200 (294)
.++.+...+ =|||||++... ...+.+...+...-....+|+|+|...
T Consensus 112 a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 112 GKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 444454444 49999998542 233333333333334568999999863
No 227
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.00 E-value=0.0034 Score=53.02 Aligned_cols=20 Identities=40% Similarity=0.569 Sum_probs=19.0
Q ss_pred eEEEEEcCCCChHHHHHHHh
Q 048597 102 GIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v 121 (294)
.+++|+|++|+|||||++.+
T Consensus 31 e~~~i~G~NGsGKSTLlk~l 50 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAI 50 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999998
No 228
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.00 E-value=0.0096 Score=52.86 Aligned_cols=22 Identities=23% Similarity=0.096 Sum_probs=19.6
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-..++|+|++|+|||||++.+
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~I 194 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNI 194 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHH
Confidence 3468999999999999999887
No 229
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.99 E-value=0.0041 Score=50.57 Aligned_cols=21 Identities=38% Similarity=0.458 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
..+|+|.|+.|+||||+++.+
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L 24 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAF 24 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999988
No 230
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.99 E-value=0.004 Score=53.04 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+|+|.|+.|+||||+++.+
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~L 95 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRL 95 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 4679999999999999999987
No 231
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.98 E-value=0.0033 Score=53.29 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHhhChh
Q 048597 103 IIGLYGTGGVGKTTLLKQRANLK 125 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v~~~~ 125 (294)
.++|+|++|+|||||++.+++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999995544
No 232
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.97 E-value=0.0039 Score=55.04 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+++|+|++|+|||||++.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~L 177 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKL 177 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHH
Confidence 4579999999999999999998
No 233
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.97 E-value=0.0042 Score=48.83 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
...+|.|.|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998843
No 234
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.96 E-value=0.0018 Score=52.44 Aligned_cols=20 Identities=35% Similarity=0.596 Sum_probs=18.3
Q ss_pred eEEEEEcCCCChHHHHHHHh
Q 048597 102 GIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v 121 (294)
.+|+|.|+.|+||||+++.+
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L 20 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKL 20 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHH
Confidence 37899999999999999887
No 235
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.96 E-value=0.0094 Score=51.79 Aligned_cols=22 Identities=41% Similarity=0.495 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+|+|+|++|+||||++..+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~L 125 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKM 125 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4679999999999999999888
No 236
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.96 E-value=0.0038 Score=49.67 Aligned_cols=20 Identities=35% Similarity=0.501 Sum_probs=18.3
Q ss_pred EEEEEcCCCChHHHHHHHhh
Q 048597 103 IIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v~ 122 (294)
+|+|.|+.|+||||+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~ 21 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLA 21 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999873
No 237
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.96 E-value=0.0041 Score=49.89 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+|+|+|+.|+||||+++.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L 32 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEIL 32 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999988
No 238
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.95 E-value=0.017 Score=52.03 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...++.++|++|+||||++..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~L 118 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKL 118 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3579999999999999999988
No 239
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.95 E-value=0.0066 Score=52.30 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCChHHHHHHHhhCh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANL 124 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~ 124 (294)
.-.+++|+|++|+|||||++.+...
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 4579999999999999999988543
No 240
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.95 E-value=0.0037 Score=51.29 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=19.5
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
....|.|.|+.|+||||+++.+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L 27 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRI 27 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHH
Confidence 3478999999999999999988
No 241
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.95 E-value=0.0035 Score=55.32 Aligned_cols=22 Identities=41% Similarity=0.548 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~i 50 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCL 50 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCchHHHHHHHH
Confidence 3479999999999999999999
No 242
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.92 E-value=0.011 Score=51.88 Aligned_cols=73 Identities=21% Similarity=0.291 Sum_probs=42.0
Q ss_pred CceEEEEEcCCCChHHHHHHHhhChh--------------HHHHHHHHHhCCCCCCc---ccCChHHHHHHHHHHhc-cC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANLK--------------KIQADIGKKIGLSTKSW---QENSFEDKALDIAGILS-RK 161 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~~--------------~i~~~i~~~~~~~~~~~---~~~~~~~~~~~l~~~l~-~k 161 (294)
.-.++.|.|++|+|||||+.++.... .........++...... ...+.++....+..... .+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~ 139 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGA 139 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCC
Confidence 34799999999999999998872100 01111244454332211 12244454444444443 44
Q ss_pred CeEEEEccccC
Q 048597 162 RFVLLLDDIWE 172 (294)
Q Consensus 162 r~LlvlDdv~~ 172 (294)
.-+||+|.+..
T Consensus 140 ~~lIVIDsl~~ 150 (349)
T 2zr9_A 140 LDIIVIDSVAA 150 (349)
T ss_dssp CSEEEEECGGG
T ss_pred CCEEEEcChHh
Confidence 67999999854
No 243
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.92 E-value=0.004 Score=50.53 Aligned_cols=19 Identities=42% Similarity=0.387 Sum_probs=17.7
Q ss_pred EEEEEcCCCChHHHHHHHh
Q 048597 103 IIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v 121 (294)
.|.|.|++|+||||+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999999988
No 244
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.91 E-value=0.0042 Score=48.96 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
..+++.|+|++|+|||||++.+..
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHH
Confidence 357999999999999999987743
No 245
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.90 E-value=0.0046 Score=49.51 Aligned_cols=21 Identities=29% Similarity=0.227 Sum_probs=19.3
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
..+|.|.|+.|+||||+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L 24 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNI 24 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHH
Confidence 468999999999999999988
No 246
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.89 E-value=0.0039 Score=53.42 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l 84 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMI 84 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHH
Confidence 3469999999999999999998
No 247
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.89 E-value=0.0041 Score=49.46 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
....|+|+|++|+|||||++.+.
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~ 50 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFT 50 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHh
Confidence 35689999999999999999873
No 248
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.88 E-value=0.0079 Score=52.64 Aligned_cols=33 Identities=27% Similarity=0.332 Sum_probs=25.0
Q ss_pred HHHHHhcCCCCceEEEEEcCCCChHHHHHHHhh
Q 048597 90 VWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 90 l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
+++-+.-.-....+++|+|++|+|||||++.+.
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHH
Confidence 444444333366899999999999999999884
No 249
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.88 E-value=0.005 Score=49.87 Aligned_cols=24 Identities=29% Similarity=0.241 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
...+|.|.|+.|+||||+++.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998743
No 250
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.86 E-value=0.007 Score=48.97 Aligned_cols=22 Identities=36% Similarity=0.392 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.++.|+|++|+|||||+..+
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l 40 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQT 40 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 4479999999999999999987
No 251
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.85 E-value=0.0048 Score=53.03 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+++++|++|+||||++..+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~L 125 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKL 125 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999888
No 252
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.84 E-value=0.0045 Score=50.25 Aligned_cols=19 Identities=32% Similarity=0.289 Sum_probs=17.7
Q ss_pred EEEEEcCCCChHHHHHHHh
Q 048597 103 IIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v 121 (294)
.|.|.|++|+||||+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4889999999999999988
No 253
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.84 E-value=0.014 Score=55.07 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l 390 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLL 390 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4478999999999999999998
No 254
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.84 E-value=0.0042 Score=50.74 Aligned_cols=22 Identities=18% Similarity=0.089 Sum_probs=19.8
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
....|.|.|++|+||||+++.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~L 25 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELI 25 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3468999999999999999988
No 255
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.80 E-value=0.005 Score=50.71 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCChHHHHHHHhhCh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANL 124 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~ 124 (294)
...+|+|.|+.|+|||||++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999998654
No 256
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.78 E-value=0.0041 Score=52.06 Aligned_cols=21 Identities=38% Similarity=0.279 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-.+|.|+|+.|+||||+++.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~L 68 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIM 68 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 368999999999999999998
No 257
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.77 E-value=0.0046 Score=49.37 Aligned_cols=23 Identities=35% Similarity=0.431 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCChHHHHHHHhhC
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
...|+|+|++|+|||||++.+..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhc
Confidence 45789999999999999998843
No 258
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.77 E-value=0.0047 Score=54.53 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~i 49 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLML 49 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEEcCCCchHHHHHHHH
Confidence 3479999999999999999999
No 259
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.75 E-value=0.006 Score=47.09 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=19.8
Q ss_pred eEEEEEcCCCChHHHHHHHhhC
Q 048597 102 GIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
..|+|+|++|+|||||++.+.+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999999854
No 260
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.74 E-value=0.0079 Score=51.77 Aligned_cols=31 Identities=29% Similarity=0.489 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhh
Q 048597 87 LDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 87 ~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
++++.+.+.. .+++++|++|+|||||++.+.
T Consensus 156 i~~L~~~l~G-----~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLEG-----FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTTT-----CEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhccC-----cEEEEECCCCCCHHHHHHHHH
Confidence 4455555442 589999999999999987765
No 261
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.72 E-value=0.051 Score=49.19 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.+.+|.++|++|+||||++..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kL 120 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKL 120 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHH
Confidence 4689999999999999998877
No 262
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.71 E-value=0.0055 Score=50.69 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
..+|.|.|++|+||||+++.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~l 29 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGL 29 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999988
No 263
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.71 E-value=0.0051 Score=54.59 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-.+++|+|++|+|||||++.+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~i 49 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMI 49 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEECCCCcHHHHHHHHH
Confidence 469999999999999999998
No 264
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.70 E-value=0.0059 Score=56.03 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+++|+|++|+|||||++.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~L 313 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKL 313 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHH
Confidence 4579999999999999999998
No 265
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.70 E-value=0.0056 Score=49.12 Aligned_cols=19 Identities=21% Similarity=0.496 Sum_probs=18.4
Q ss_pred EEEEEcCCCChHHHHHHHh
Q 048597 103 IIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v 121 (294)
+|+|.|+.|+||||+++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~l 22 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRV 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 8999999999999999998
No 266
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.69 E-value=0.0066 Score=49.94 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.8
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.++.|+|++|+|||||+..+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l 44 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTL 44 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHH
Confidence 3479999999999999999887
No 267
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.69 E-value=0.0052 Score=54.52 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~i 57 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMI 57 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCChHHHHHHHH
Confidence 3479999999999999999998
No 268
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.68 E-value=0.0053 Score=48.35 Aligned_cols=22 Identities=41% Similarity=0.517 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHhhCh
Q 048597 103 IIGLYGTGGVGKTTLLKQRANL 124 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v~~~ 124 (294)
-|.|+|.+|+|||||++.+.+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999764
No 269
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.67 E-value=0.012 Score=53.55 Aligned_cols=20 Identities=55% Similarity=1.004 Sum_probs=18.1
Q ss_pred eEEEEEcCCCChHHHHHHHh
Q 048597 102 GIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v 121 (294)
..++|+|++|+|||||++.+
T Consensus 152 q~~~i~G~sGvGKTtL~~~l 171 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQEL 171 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHH
Confidence 46899999999999999977
No 270
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.66 E-value=0.0062 Score=52.76 Aligned_cols=22 Identities=32% Similarity=0.681 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
+.++|+|.|-||+||||.+-.+
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNL 68 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNL 68 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHH
Confidence 6799999999999999998877
No 271
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.61 E-value=0.007 Score=59.82 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.-.+++|+||+|.|||||.+.+.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHH
Confidence 45799999999999999999884
No 272
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.60 E-value=0.0097 Score=48.08 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhC
Q 048597 86 LLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 86 ~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
-+..+..++..-+ ....+.|+||+|+||||+|..+.+
T Consensus 44 f~~~l~~~~~~iP-kkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 44 FLGALKSFLKGTP-KKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHHTCT-TCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-cccEEEEECCCCCCHHHHHHHHHH
Confidence 3555566655421 235799999999999999877644
No 273
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.58 E-value=0.043 Score=48.01 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=19.8
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.++.|.|++|+|||||+..+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~l 142 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTL 142 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999876
No 274
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.58 E-value=0.0052 Score=53.34 Aligned_cols=23 Identities=39% Similarity=0.395 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..+++.|+|+.|+|||||++.+.
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~ 25 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHIL 25 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHH
T ss_pred cccEEEEEecCCCCHHHHHHHHH
Confidence 46899999999999999998874
No 275
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.55 E-value=0.0041 Score=54.83 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~i 51 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRII 51 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHH
Confidence 3479999999999999999998
No 276
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.54 E-value=0.0067 Score=47.68 Aligned_cols=20 Identities=25% Similarity=0.509 Sum_probs=18.3
Q ss_pred eEEEEEcCCCChHHHHHHHh
Q 048597 102 GIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v 121 (294)
.+.+|+|+.|+|||||+..+
T Consensus 27 g~~~i~G~NGsGKStll~ai 46 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAI 46 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHH
Confidence 48999999999999998776
No 277
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.54 E-value=0.01 Score=46.58 Aligned_cols=25 Identities=48% Similarity=0.460 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHhhC
Q 048597 99 RNRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 99 ~~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
.....|.|+|.+|+|||||++.+.+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 3567899999999999999999843
No 278
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.52 E-value=0.0034 Score=53.79 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=17.4
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
+..+|+|.|+.|+||||+++.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~ 26 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFD 26 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999873
No 279
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.51 E-value=0.014 Score=57.76 Aligned_cols=99 Identities=17% Similarity=0.231 Sum_probs=53.4
Q ss_pred CceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCC---------------------CCcc-cCChHHHHHHHHHH
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLST---------------------KSWQ-ENSFEDKALDIAGI 157 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~---------------------~~~~-~~~~~~~~~~l~~~ 157 (294)
...+++|+||+|.||||+++.+.-. .+..+.+... .... ......-...+...
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ial~-----~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~i 735 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTGVI-----VLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASI 735 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHHHH-----HHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-----HHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHH
Confidence 4579999999999999999987211 1122222110 0000 00111112223333
Q ss_pred h--ccCCeEEEEccccCccc---h----hhhcCCcCCCCCCcEEEEecCChHHhhc
Q 048597 158 L--SRKRFVLLLDDIWEHIN---L----NKLGVPLQYLHLGSKIVFTTNSRVVCGQ 204 (294)
Q Consensus 158 l--~~kr~LlvlDdv~~~~~---~----~~l~~~l~~~~~gs~iivTtr~~~v~~~ 204 (294)
+ ..++-|++||+.-..-+ - ..+...+. ...|+.+|++|....++..
T Consensus 736 l~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~-~~~g~~vl~aTH~~el~~l 790 (934)
T 3thx_A 736 LRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIA-TKIGAFCMFATHFHELTAL 790 (934)
T ss_dssp HHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHH-HTTCCEEEEEESCGGGGGG
T ss_pred HHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hcCCCEEEEEcCcHHHHHH
Confidence 3 46778999999865211 1 11122221 1247899999998776543
No 280
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.51 E-value=0.0066 Score=51.49 Aligned_cols=21 Identities=33% Similarity=0.408 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-.++.|+|++|+|||||+..+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l 50 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQL 50 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHH
Confidence 479999999999999999887
No 281
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.50 E-value=0.0065 Score=54.23 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~i 67 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAF 67 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCChHHHHHHHH
Confidence 4479999999999999999998
No 282
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.50 E-value=0.0067 Score=51.84 Aligned_cols=22 Identities=27% Similarity=0.524 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|.|++|+|||||++.+
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~i 55 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQ 55 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHH
Confidence 3479999999999999999988
No 283
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.50 E-value=0.011 Score=50.74 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=25.3
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhChh
Q 048597 87 LDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRANLK 125 (294)
Q Consensus 87 ~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 125 (294)
++++...+.. .+++|+|++|+|||||++.+....
T Consensus 160 v~~lf~~l~g-----eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 160 IEELKEYLKG-----KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HHHHHHHHSS-----SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred HHHHHHHhcC-----CeEEEECCCCCcHHHHHHHhcccc
Confidence 4445554442 589999999999999999886543
No 284
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.49 E-value=0.0065 Score=48.78 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCChHHHHHHHhhChh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANLK 125 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 125 (294)
....|+|+|++|+|||||++.+....
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999996654
No 285
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.47 E-value=0.0074 Score=49.40 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=17.9
Q ss_pred EEEEEcCCCChHHHHHHHh
Q 048597 103 IIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v 121 (294)
.|.|.|+.|+||||+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLV 20 (223)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999988
No 286
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.45 E-value=0.0077 Score=52.61 Aligned_cols=20 Identities=30% Similarity=0.282 Sum_probs=18.7
Q ss_pred eEEEEEcCCCChHHHHHHHh
Q 048597 102 GIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v 121 (294)
.+|+|.|+.|+||||||..+
T Consensus 8 ~lI~I~GptgSGKTtla~~L 27 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEV 27 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHH
Confidence 58999999999999999887
No 287
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.44 E-value=0.0089 Score=46.91 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCChHHHHHHHhhC
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
...|+|+|++|+|||||++.+.+
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46799999999999999999854
No 288
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.43 E-value=0.0077 Score=53.25 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
...++|+|++|+|||||++.+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L 190 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKL 190 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHH
Confidence 478999999999999999998
No 289
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.42 E-value=0.0077 Score=48.83 Aligned_cols=19 Identities=32% Similarity=0.149 Sum_probs=17.7
Q ss_pred EEEEEcCCCChHHHHHHHh
Q 048597 103 IIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v 121 (294)
.|.|.|+.|+||||+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFI 20 (214)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999988
No 290
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.42 E-value=0.0081 Score=51.37 Aligned_cols=21 Identities=33% Similarity=0.365 Sum_probs=19.2
Q ss_pred eEEEEEcCCCChHHHHHHHhh
Q 048597 102 GIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.+|.|.|++|+||||+++.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~ 23 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFI 23 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999884
No 291
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.42 E-value=0.0089 Score=49.31 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+|+|.|+.|+||||+++.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l 36 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKII 36 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 5679999999999999999987
No 292
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.37 E-value=0.015 Score=50.89 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCChHHHHHHHhh
Q 048597 99 RNRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 99 ~~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.+..+|+|+|++|+|||||+..+.
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~ 77 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFG 77 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHH
Confidence 467899999999999999998873
No 293
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.36 E-value=0.015 Score=52.33 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.-.+++|+|+.|+|||||++.+.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~all 188 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGL 188 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHH
Confidence 45799999999999999999873
No 294
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.35 E-value=0.0096 Score=49.01 Aligned_cols=22 Identities=27% Similarity=0.197 Sum_probs=19.7
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
....|.|.|+.|+||||+++.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~L 36 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKL 36 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3468999999999999999998
No 295
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.34 E-value=0.0089 Score=48.45 Aligned_cols=19 Identities=37% Similarity=0.496 Sum_probs=17.9
Q ss_pred EEEEEcCCCChHHHHHHHh
Q 048597 103 IIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v 121 (294)
+|.|.|++|+||||.|+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~L 20 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRL 20 (206)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999999998
No 296
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.34 E-value=0.01 Score=45.16 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=19.3
Q ss_pred eEEEEEcCCCChHHHHHHHhhC
Q 048597 102 GIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
.-|.++|.+|+|||||++.+.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999843
No 297
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.34 E-value=0.0084 Score=48.77 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=19.1
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
...|.|.|++|+||||+++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~L 25 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFI 25 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 357899999999999999998
No 298
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.31 E-value=0.002 Score=63.10 Aligned_cols=146 Identities=15% Similarity=0.085 Sum_probs=76.2
Q ss_pred CceeehhHHHHHHHHHHhcC-----------CCCceEEEEEcCCCChHHHHHHHhhChhHHHHHHHHHhCCCCCCc----
Q 048597 78 RTVIRQELLLDRVWRFVTDQ-----------ERNRGIIGLYGTGGVGKTTLLKQRANLKKIQADIGKKIGLSTKSW---- 142 (294)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~~~~~~~~~~---- 142 (294)
..++|.+..++.+.+.+... -.....+.++|++|+||||||+.+...... ..+.+.....
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~-----~~i~v~~~~l~~~~ 551 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISIKGPELLTMW 551 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC-----CCCCCCCSSSTTCC
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC-----CEEEEechHhhhhh
Confidence 34678888888887776531 123467899999999999999998543210 0111111111
Q ss_pred ccCChHHHHHHHHHHh-ccCCeEEEEccccCc----------------cchhhhcCCcCC--CCCCcEEEEecCChH-Hh
Q 048597 143 QENSFEDKALDIAGIL-SRKRFVLLLDDIWEH----------------INLNKLGVPLQY--LHLGSKIVFTTNSRV-VC 202 (294)
Q Consensus 143 ~~~~~~~~~~~l~~~l-~~kr~LlvlDdv~~~----------------~~~~~l~~~l~~--~~~gs~iivTtr~~~-v~ 202 (294)
...... ....+.+.. ....+++++|++... .....+...+.. ...+..||.||.... +-
T Consensus 552 ~g~~~~-~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld 630 (806)
T 1ypw_A 552 FGESEA-NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 630 (806)
T ss_dssp TTTSSH-HHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGS
T ss_pred cCccHH-HHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCC
Confidence 111222 222333332 345679999998641 011223333321 122334555554332 21
Q ss_pred hc-c---CCce-eecCCCCHHHHHHHHHHHhC
Q 048597 203 GQ-M---EATM-LNASPLRDEEAWRLFEEAVG 229 (294)
Q Consensus 203 ~~-~---~~~~-~~l~~L~~~~~~~Lf~~~~~ 229 (294)
.. . .... +.+...+.++-.++++.++.
T Consensus 631 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~ 662 (806)
T 1ypw_A 631 PAILRPGRLDQLIYIPLPDEKSRVAILKANLR 662 (806)
T ss_dssp CTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTS
T ss_pred HHHhCccccCceeecCCCCHHHHHHHHHHHhc
Confidence 11 1 1222 67777788888888876653
No 299
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.28 E-value=0.023 Score=45.76 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
..+|.|.|+.|+||||+++.+
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~l 26 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKL 26 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHH
Confidence 369999999999999999988
No 300
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.27 E-value=0.019 Score=48.30 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhC
Q 048597 88 DRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 88 ~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
.-+..|+.........|.++||+|+|||++|..+.+
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 345556655423456899999999999999987643
No 301
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.24 E-value=0.011 Score=51.09 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=19.2
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
..+|.|.||.|+|||||+..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~L 23 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVML 23 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHH
Confidence 368999999999999999988
No 302
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.23 E-value=0.011 Score=52.00 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
+..+|+|+|++|+|||||.+.+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999998843
No 303
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.22 E-value=0.0097 Score=45.54 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=19.6
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..--|.|+|.+|+|||||++.+.
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~ 26 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHH
Confidence 34568999999999999998874
No 304
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.22 E-value=0.0076 Score=56.94 Aligned_cols=47 Identities=13% Similarity=0.047 Sum_probs=33.8
Q ss_pred cCceeehhHHHHHHHHHHhcCCC---------CceEEEEEcCCCChHHHHHHHhhC
Q 048597 77 ERTVIRQELLLDRVWRFVTDQER---------NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~~~---------~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
.+.++|.+..+..+.-.|..+.. ...-|.++|++|+|||+||+.+..
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~ 349 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISR 349 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSST
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHH
Confidence 35688998877766655554410 011689999999999999999954
No 305
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.21 E-value=0.0095 Score=45.31 Aligned_cols=20 Identities=40% Similarity=0.569 Sum_probs=18.0
Q ss_pred EEEEEcCCCChHHHHHHHhh
Q 048597 103 IIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v~ 122 (294)
-|.++|.+|+|||||++.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999998873
No 306
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.21 E-value=0.011 Score=53.35 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
...+|.|+|++|+||||+++.+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999998754
No 307
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.21 E-value=0.011 Score=49.26 Aligned_cols=23 Identities=39% Similarity=0.455 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...++.+.|.||+|||||+..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHH
Confidence 46799999999999999998873
No 308
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.20 E-value=0.022 Score=58.81 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-..++|+|+.|+|||||++.+
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll 464 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLL 464 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHH
T ss_pred CCcEEEEEecCCCcHHHHHHHh
Confidence 3479999999999999999998
No 309
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.20 E-value=0.01 Score=51.45 Aligned_cols=21 Identities=33% Similarity=0.268 Sum_probs=19.1
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
..+|.|+|+.|+|||||++.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~L 25 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMAL 25 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 358999999999999999887
No 310
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.17 E-value=0.0098 Score=46.34 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.5
Q ss_pred eEEEEEcCCCChHHHHHHHhhC
Q 048597 102 GIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
..|+|+|.+|+|||||++.+..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5689999999999999999854
No 311
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.17 E-value=0.03 Score=48.37 Aligned_cols=19 Identities=16% Similarity=0.032 Sum_probs=17.6
Q ss_pred EEEEEcCCCChHHHHHHHh
Q 048597 103 IIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v 121 (294)
++-|.|++|+|||||+.++
T Consensus 30 iteI~G~pGsGKTtL~Lq~ 48 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTM 48 (333)
T ss_dssp EEEEEESSSSSHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 7899999999999998776
No 312
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.12 E-value=0.011 Score=45.35 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHhhC
Q 048597 103 IIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v~~ 123 (294)
-|.|+|.+|+|||||++.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 588999999999999999854
No 313
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.11 E-value=0.023 Score=51.41 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcC-------CCCceEEEEEcCCCChHHHHHHHh
Q 048597 86 LLDRVWRFVTDQ-------ERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 86 ~~~~l~~~L~~~-------~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
..+++.+++... ....++|.++|.+|+||||++..+
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~L 120 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKL 120 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHH
Confidence 445566655432 134689999999999999998887
No 314
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.10 E-value=0.015 Score=45.09 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
+...|.|+|.+|+|||||++.+.+
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999988743
No 315
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.09 E-value=0.015 Score=45.75 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
....|.|+|.+|+|||||+..+.+
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999998843
No 316
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.08 E-value=0.013 Score=51.01 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.8
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+|.|+||.|+|||||+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~L 60 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDL 60 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHH
Confidence 3469999999999999999988
No 317
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.07 E-value=0.011 Score=52.01 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I 91 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMI 91 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999998
No 318
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.07 E-value=0.014 Score=50.18 Aligned_cols=22 Identities=32% Similarity=0.229 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+|.|.||.|+|||||+..+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~L 30 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIEL 30 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHH
Confidence 4578999999999999999988
No 319
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.06 E-value=0.015 Score=44.88 Aligned_cols=25 Identities=36% Similarity=0.302 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCChHHHHHHHhhCh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANL 124 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~ 124 (294)
...-|.|+|.+|+|||||++.+.+.
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEEEECCCCccHHHHHHHHhcC
Confidence 3457999999999999999998543
No 320
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.06 E-value=0.013 Score=52.06 Aligned_cols=99 Identities=16% Similarity=0.134 Sum_probs=55.4
Q ss_pred CceEEEEEcCCCChHHHHHHHhhChhHHH--HHHH---HH--hCCCCC-C--cc---cCChHHHHHHHHHHhccCCeEEE
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANLKKIQ--ADIG---KK--IGLSTK-S--WQ---ENSFEDKALDIAGILSRKRFVLL 166 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~~~i~--~~i~---~~--~~~~~~-~--~~---~~~~~~~~~~l~~~l~~kr~Llv 166 (294)
.-.+++|+|+.|+|||||++.+....... ..+. .. ...... . .+ ..+...+...+...|...+-+|+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~il 214 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 214 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEE
Confidence 45799999999999999999885433221 0000 00 000000 0 00 00112334567777777888999
Q ss_pred EccccCccchhhhcCCcCCCCCCcEEEEecCChHH
Q 048597 167 LDDIWEHINLNKLGVPLQYLHLGSKIVFTTNSRVV 201 (294)
Q Consensus 167 lDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v 201 (294)
+|++.+.+....+... ...|..++.|+...++
T Consensus 215 ldE~~d~e~~~~~l~~---~~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 215 VGEMRDLETVETALRA---AETGHLVFGTLHTNTA 246 (372)
T ss_dssp ESCCCSHHHHHHHHHH---HTTTCEEEECCCCCSH
T ss_pred ECCCCCHHHHHHHHHH---HhcCCEEEEEECcchH
Confidence 9999765444332222 1235667777776543
No 321
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.06 E-value=0.012 Score=45.26 Aligned_cols=21 Identities=38% Similarity=0.396 Sum_probs=18.8
Q ss_pred eEEEEEcCCCChHHHHHHHhh
Q 048597 102 GIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~ 122 (294)
--|.|+|.+|+|||||++.+.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999999884
No 322
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.05 E-value=0.014 Score=48.04 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...+|.|.|+.|+||||+++.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~ 47 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVY 47 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Confidence 45799999999999999998873
No 323
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.02 E-value=0.015 Score=45.23 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...-|.|+|.+|+|||||++.+.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 56789999999999999999884
No 324
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.02 E-value=0.012 Score=44.86 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=19.2
Q ss_pred ceEEEEEcCCCChHHHHHHHhh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..-|.++|.+|+|||||++.+.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHH
Confidence 3568999999999999998884
No 325
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.00 E-value=0.012 Score=54.87 Aligned_cols=22 Identities=55% Similarity=0.833 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL 45 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKIL 45 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHH
Confidence 4479999999999999999998
No 326
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.99 E-value=0.032 Score=49.54 Aligned_cols=34 Identities=26% Similarity=0.218 Sum_probs=24.9
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhC
Q 048597 89 RVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 89 ~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
++++.+..-- .-..++|+|++|+|||+|+.++.+
T Consensus 164 raID~l~Pig-rGQR~lIfg~~g~GKT~Ll~~Ia~ 197 (427)
T 3l0o_A 164 RLIDLFAPIG-KGQRGMIVAPPKAGKTTILKEIAN 197 (427)
T ss_dssp HHHHHHSCCB-TTCEEEEEECTTCCHHHHHHHHHH
T ss_pred hhhhhccccc-CCceEEEecCCCCChhHHHHHHHH
Confidence 5556665421 346889999999999999987744
No 327
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.99 E-value=0.021 Score=49.81 Aligned_cols=95 Identities=17% Similarity=0.084 Sum_probs=50.2
Q ss_pred eEEEEEcCCCChHHHHHHHhhChhHHHHHHHH-----HhCCC-CCCc-ccC--ChHHHHHHHHHHhccCCeEEEEccccC
Q 048597 102 GIIGLYGTGGVGKTTLLKQRANLKKIQADIGK-----KIGLS-TKSW-QEN--SFEDKALDIAGILSRKRFVLLLDDIWE 172 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~~~~~i~~~i~~-----~~~~~-~~~~-~~~--~~~~~~~~l~~~l~~kr~LlvlDdv~~ 172 (294)
.+++|+|+.|+|||||++.+............ .+... .... .-. .-......+...|..++-++++|+...
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 68999999999999999998433211100000 00000 0000 000 112334456667777888899999877
Q ss_pred ccchhhhcCCcCCCCCCcEEEEecCCh
Q 048597 173 HINLNKLGVPLQYLHLGSKIVFTTNSR 199 (294)
Q Consensus 173 ~~~~~~l~~~l~~~~~gs~iivTtr~~ 199 (294)
.+.++.+. .+..+ +.-+++||...
T Consensus 252 ~e~~~~l~-~~~~g--~~tvi~t~H~~ 275 (330)
T 2pt7_A 252 SEAYDFYN-VLCSG--HKGTLTTLHAG 275 (330)
T ss_dssp THHHHHHH-HHHTT--CCCEEEEEECS
T ss_pred HHHHHHHH-HHhcC--CCEEEEEEccc
Confidence 55444332 22222 22356666543
No 328
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.98 E-value=0.012 Score=48.34 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=19.3
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.++.|.|++|+|||||+.++
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~ 43 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQF 43 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3469999999999999998776
No 329
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.97 E-value=0.03 Score=46.89 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhC
Q 048597 87 LDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 87 ~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
+.++...+.........|+|+|..|+|||||+..+..
T Consensus 22 l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 22 LIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHT
T ss_pred HHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3344444444434567899999999999999999843
No 330
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.97 E-value=0.013 Score=45.02 Aligned_cols=22 Identities=32% Similarity=0.661 Sum_probs=19.1
Q ss_pred eEEEEEcCCCChHHHHHHHhhC
Q 048597 102 GIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
--|.|+|.+|+|||||++.+.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4688999999999999998843
No 331
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.96 E-value=0.013 Score=44.79 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=18.5
Q ss_pred eEEEEEcCCCChHHHHHHHhh
Q 048597 102 GIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~ 122 (294)
--|.|+|.+|+|||||++.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~ 24 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999998883
No 332
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.96 E-value=0.013 Score=44.69 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=18.5
Q ss_pred eEEEEEcCCCChHHHHHHHhh
Q 048597 102 GIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~ 122 (294)
--|.|+|.+|+|||||++.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~ 24 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999998873
No 333
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.96 E-value=0.012 Score=46.80 Aligned_cols=23 Identities=35% Similarity=0.333 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...-|.|+|.+|+|||||++.+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999984
No 334
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.96 E-value=0.012 Score=51.74 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=20.1
Q ss_pred eEEEEEcCCCChHHHHHHHhhCh
Q 048597 102 GIIGLYGTGGVGKTTLLKQRANL 124 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~~~ 124 (294)
.+++|+|++|+|||||++.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 58999999999999999887543
No 335
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.96 E-value=0.013 Score=46.17 Aligned_cols=21 Identities=38% Similarity=0.479 Sum_probs=18.9
Q ss_pred eEEEEEcCCCChHHHHHHHhh
Q 048597 102 GIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~ 122 (294)
--|.++|.+|+|||||+..+.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~ 42 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLI 42 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 578899999999999998884
No 336
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.96 E-value=0.01 Score=52.48 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCChHHHHHHHhhC
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
-..++|+|+.|+|||||++.+..
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36999999999999999988843
No 337
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=94.95 E-value=0.034 Score=57.29 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|+.|+|||||++.+
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll 436 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLM 436 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4479999999999999999998
No 338
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.94 E-value=0.039 Score=48.76 Aligned_cols=73 Identities=19% Similarity=0.203 Sum_probs=41.8
Q ss_pred CceEEEEEcCCCChHHHHHHHhhChh--------------HHHHHHHHHhCCCCCC---cccCChHHHHHHHHHHhc-cC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANLK--------------KIQADIGKKIGLSTKS---WQENSFEDKALDIAGILS-RK 161 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~~--------------~i~~~i~~~~~~~~~~---~~~~~~~~~~~~l~~~l~-~k 161 (294)
.-.++.|.|++|+|||||+..+.... .........++..... ....+.++....+...++ .+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~ 152 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGA 152 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCC
Confidence 34689999999999999998872110 0001123444432211 012345555555555554 34
Q ss_pred CeEEEEccccC
Q 048597 162 RFVLLLDDIWE 172 (294)
Q Consensus 162 r~LlvlDdv~~ 172 (294)
--+||+|.+..
T Consensus 153 ~~lVVIDsl~~ 163 (366)
T 1xp8_A 153 IDVVVVDSVAA 163 (366)
T ss_dssp CSEEEEECTTT
T ss_pred CCEEEEeChHH
Confidence 56899998854
No 339
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.93 E-value=0.015 Score=49.87 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+++++|++|+||||++..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~l 118 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKL 118 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3579999999999999999988
No 340
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.92 E-value=0.032 Score=46.94 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHhhC
Q 048597 86 LLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 86 ~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
.+.++...+.........|.++|.+|+|||||++.+++
T Consensus 24 ~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 24 KLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhC
Confidence 33444444444433567899999999999999998854
No 341
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.91 E-value=0.01 Score=51.03 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHhhCh
Q 048597 103 IIGLYGTGGVGKTTLLKQRANL 124 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v~~~ 124 (294)
-|+|+|++|+|||||++.++..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4599999999999999998653
No 342
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.90 E-value=0.013 Score=44.89 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=19.6
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..--|.|+|.+|+|||||++.+.
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~ 27 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHH
Confidence 34578999999999999998874
No 343
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.89 E-value=0.016 Score=46.73 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
....|.|+|++|+|||||+..+.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~ 33 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLT 33 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 56789999999999999998873
No 344
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.89 E-value=0.014 Score=44.69 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=18.3
Q ss_pred eEEEEEcCCCChHHHHHHHhh
Q 048597 102 GIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~ 122 (294)
--|.|+|.+|+|||||++.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~ 24 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 358899999999999998873
No 345
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.87 E-value=0.014 Score=44.74 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.1
Q ss_pred ceEEEEEcCCCChHHHHHHHhh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.--|.|+|.+|+|||||++.+.
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~ 27 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFV 27 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHH
Confidence 3468999999999999998873
No 346
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.86 E-value=0.018 Score=50.55 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.++.|+|++|+|||||++.+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l 151 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTL 151 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999987
No 347
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.86 E-value=0.015 Score=53.37 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=20.1
Q ss_pred eEEEEEcCCCChHHHHHHHhhC
Q 048597 102 GIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
.+++|+|++|+|||||++.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 8999999999999999988844
No 348
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.85 E-value=0.017 Score=52.24 Aligned_cols=36 Identities=22% Similarity=0.442 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcC------C-CCceEEEEEcCCCChHHHHHHHh
Q 048597 86 LLDRVWRFVTDQ------E-RNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 86 ~~~~l~~~L~~~------~-~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
..++|.+++... . ....+|.|+|++|+||||++..+
T Consensus 77 ~~~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~L 119 (432)
T 2v3c_C 77 VYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKL 119 (432)
T ss_dssp HHHHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHH
T ss_pred HHHHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHH
Confidence 344555555432 1 23569999999999999999887
No 349
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.84 E-value=0.011 Score=53.89 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCChHHHHHHHhhChh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANLK 125 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 125 (294)
.-.+++|+|+.|+|||||++.+.+..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 44799999999999999999985544
No 350
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.84 E-value=0.014 Score=45.12 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...-|.|+|.+|+|||||++.+.
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHH
Confidence 34578999999999999999884
No 351
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.84 E-value=0.017 Score=45.58 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCChHHHHHHHhhCh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANL 124 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~ 124 (294)
....|.|+|.+|+|||||++.+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999998654
No 352
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.83 E-value=0.013 Score=54.56 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l 67 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKIL 67 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999998
No 353
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.82 E-value=0.015 Score=44.40 Aligned_cols=20 Identities=35% Similarity=0.390 Sum_probs=17.8
Q ss_pred EEEEEcCCCChHHHHHHHhh
Q 048597 103 IIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v~ 122 (294)
-|.|+|.+|+|||||++.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~ 21 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLK 21 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999998884
No 354
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.81 E-value=0.011 Score=53.25 Aligned_cols=21 Identities=38% Similarity=0.475 Sum_probs=19.5
Q ss_pred EEEEcCCCChHHHHHHHhhCh
Q 048597 104 IGLYGTGGVGKTTLLKQRANL 124 (294)
Q Consensus 104 i~I~G~~GiGKTtLa~~v~~~ 124 (294)
++|+|++|+|||||++.++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 999999999999999999665
No 355
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.81 E-value=0.029 Score=57.88 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-..|+|+|+.|+|||||++.+
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL 1125 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALL 1125 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHH
T ss_pred CCCEEEEECCCCChHHHHHHHH
Confidence 3468999999999999999998
No 356
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.80 E-value=0.017 Score=44.68 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
...-|.|+|.+|+|||||++.+.+
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 456789999999999999998854
No 357
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.79 E-value=0.015 Score=44.61 Aligned_cols=22 Identities=41% Similarity=0.416 Sum_probs=19.2
Q ss_pred ceEEEEEcCCCChHHHHHHHhh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.--|.|+|.+|+|||||++.+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHH
Confidence 3568999999999999999884
No 358
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.79 E-value=0.031 Score=43.82 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...-|.|+|.+|+|||||++.+.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~ 37 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFS 37 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 56789999999999999999885
No 359
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.78 E-value=0.03 Score=51.65 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcC-------CCCceEEEEEcCCCChHHHHHHHh
Q 048597 86 LLDRVWRFVTDQ-------ERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 86 ~~~~l~~~L~~~-------~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
..++|.+++... .....+|.|+|.+|+||||++..+
T Consensus 79 v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kL 121 (504)
T 2j37_W 79 VFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKL 121 (504)
T ss_dssp HHHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHH
Confidence 344555555432 134679999999999999999888
No 360
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.77 E-value=0.018 Score=45.21 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
....|.|+|..|+|||||++.+.+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFN 45 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHc
Confidence 456789999999999999998843
No 361
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.76 E-value=0.014 Score=55.15 Aligned_cols=22 Identities=45% Similarity=0.718 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL 123 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKIL 123 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCChHHHHHHHH
Confidence 3479999999999999999998
No 362
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.75 E-value=0.015 Score=45.62 Aligned_cols=23 Identities=35% Similarity=0.335 Sum_probs=19.6
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..--|.|+|.+|+|||||++.+.
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~ 28 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFA 28 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEEEECCCCCCHHHHHHHHh
Confidence 34578899999999999998873
No 363
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.73 E-value=0.015 Score=45.73 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=19.3
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
..--|.|+|.+|+|||||++.+
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~ 40 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRY 40 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHH
Confidence 4468899999999999999876
No 364
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.73 E-value=0.079 Score=46.21 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=19.8
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.++.|.|.+|+|||||+..+
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~i 66 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNM 66 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHH
Confidence 3479999999999999999887
No 365
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.72 E-value=0.013 Score=46.77 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCChHHHHHHHhhCh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRANL 124 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~~~ 124 (294)
..-|.++|.+|+|||||++.+.+.
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999998653
No 366
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.72 E-value=0.015 Score=49.94 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
....|+|+|.+|+|||||++.+..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHC
Confidence 456899999999999999999843
No 367
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.71 E-value=0.016 Score=44.28 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.1
Q ss_pred ceEEEEEcCCCChHHHHHHHhh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.--|.|+|.+|+|||||++.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~ 27 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHH
Confidence 3568999999999999998873
No 368
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.70 E-value=0.015 Score=54.19 Aligned_cols=21 Identities=43% Similarity=0.740 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-.+++|+|++|+|||||++.+
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l 314 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARIL 314 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 358999999999999999999
No 369
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.70 E-value=0.02 Score=44.42 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...-|.|+|.+|+|||||++.+.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999998874
No 370
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.70 E-value=0.016 Score=46.60 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=18.9
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-..|.|.|++|+||||||..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~L 54 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALEL 54 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 467999999999999999877
No 371
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.70 E-value=0.018 Score=46.13 Aligned_cols=22 Identities=36% Similarity=0.350 Sum_probs=18.8
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
+.--|.|+|.+|+|||||+..+
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l 50 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISY 50 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEEECcCCCCHHHHHHHH
Confidence 4567899999999999999776
No 372
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.67 E-value=0.015 Score=48.76 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
+...|.|.|+.|+||||+++.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45799999999999999999884
No 373
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.67 E-value=0.019 Score=47.48 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCChHHHHHHHhh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...|.|.|+.|+||||+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~ 23 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLT 23 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHH
Confidence 4689999999999999998873
No 374
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.66 E-value=0.015 Score=45.48 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=18.5
Q ss_pred EEEEEcCCCChHHHHHHHhhC
Q 048597 103 IIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v~~ 123 (294)
-|.|+|.+|+|||||++.+.+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999998843
No 375
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.64 E-value=0.022 Score=43.52 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=18.6
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
..+..|+|+.|.|||||+..+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai 43 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAI 43 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 368899999999999998776
No 376
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.64 E-value=0.017 Score=45.86 Aligned_cols=22 Identities=41% Similarity=0.381 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCChHHHHHHHhh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..-|.|+|.+|+|||||++.+.
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~ 27 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFA 27 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHh
Confidence 4569999999999999998874
No 377
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.63 E-value=0.017 Score=44.69 Aligned_cols=25 Identities=32% Similarity=0.292 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCChHHHHHHHhhCh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANL 124 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~ 124 (294)
..--|.|+|.+|+|||||++.+.+.
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3457899999999999999998543
No 378
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.63 E-value=0.016 Score=45.78 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=18.9
Q ss_pred ceEEEEEcCCCChHHHHHHHhh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...|.++|.+|+|||||++.+.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~ 44 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLK 44 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999998874
No 379
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.62 E-value=0.023 Score=43.59 Aligned_cols=23 Identities=35% Similarity=0.405 Sum_probs=19.8
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...-|.|+|.+|+|||||++.+.
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~ 28 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQ 28 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 34678999999999999998883
No 380
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.62 E-value=0.022 Score=44.08 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...-|.|+|..|+|||||++.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~ 30 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFI 30 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999998874
No 381
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.61 E-value=0.017 Score=45.10 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.1
Q ss_pred ceEEEEEcCCCChHHHHHHHhh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.--|.|+|.+|+|||||++.+.
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~ 25 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLI 25 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999998883
No 382
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.61 E-value=0.018 Score=44.55 Aligned_cols=23 Identities=35% Similarity=0.268 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...-|.|+|.+|+|||||++.+.
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~ 36 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFT 36 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999883
No 383
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.60 E-value=0.017 Score=45.38 Aligned_cols=21 Identities=48% Similarity=0.371 Sum_probs=18.4
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
.--|.|+|.+|+|||||++.+
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l 34 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWI 34 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHH
Confidence 457899999999999999766
No 384
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.60 E-value=0.017 Score=53.95 Aligned_cols=21 Identities=43% Similarity=0.778 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-.+++|+|++|+|||||++.+
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l 332 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKML 332 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 368999999999999999998
No 385
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.58 E-value=0.018 Score=45.14 Aligned_cols=23 Identities=35% Similarity=0.309 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...-|.|+|.+|+|||||++.+.
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~ 32 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYT 32 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHH
T ss_pred eeEEEEEECCCCCCHHHHHHHHh
Confidence 35678999999999999998884
No 386
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.57 E-value=0.018 Score=44.56 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=18.6
Q ss_pred eEEEEEcCCCChHHHHHHHhh
Q 048597 102 GIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~ 122 (294)
--|.|+|..|+|||||++.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~ 35 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFM 35 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999998873
No 387
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.56 E-value=0.017 Score=52.41 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~I 177 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMM 177 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4479999999999999999998
No 388
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.56 E-value=0.018 Score=44.84 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..--|.|+|.+|+|||||++.+.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~ 39 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFF 39 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999998874
No 389
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.55 E-value=0.0088 Score=51.61 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHhhChh
Q 048597 102 GIIGLYGTGGVGKTTLLKQRANLK 125 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~~~~ 125 (294)
.+++|+|++|+|||||++.+....
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 699999999999999999886644
No 390
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.51 E-value=0.019 Score=45.28 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=19.7
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..--|.|+|.+|+|||||++.+.
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~ 42 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFL 42 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHH
Confidence 34578999999999999998873
No 391
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.51 E-value=0.018 Score=54.53 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL 137 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKIL 137 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCChHHHHHHHH
Confidence 3469999999999999999998
No 392
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.51 E-value=0.018 Score=44.91 Aligned_cols=23 Identities=30% Similarity=0.254 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...-|.|+|.+|+|||||++.+.
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~ 31 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFI 31 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHH
Confidence 34678999999999999998873
No 393
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.50 E-value=0.019 Score=44.56 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.3
Q ss_pred ceEEEEEcCCCChHHHHHHHhh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..-|.|+|.+|+|||||++.+.
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~ 33 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFV 33 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHH
Confidence 4578999999999999998873
No 394
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.49 E-value=0.018 Score=54.49 Aligned_cols=21 Identities=43% Similarity=0.778 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-.+++|+|++|+|||||++.+
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l 402 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKML 402 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 368999999999999999998
No 395
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.49 E-value=0.019 Score=45.24 Aligned_cols=23 Identities=39% Similarity=0.398 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...-|.|+|..|+|||||++.+.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~ 46 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFT 46 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHh
Confidence 45679999999999999998873
No 396
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.48 E-value=0.019 Score=45.63 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...-|.|+|.+|+|||||++.+.
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~ 35 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFM 35 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999998883
No 397
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.48 E-value=0.019 Score=44.65 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...-|.|+|.+|+|||||++.+.
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~ 39 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFM 39 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHh
Confidence 34678999999999999998884
No 398
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.47 E-value=0.018 Score=46.65 Aligned_cols=20 Identities=35% Similarity=0.406 Sum_probs=18.6
Q ss_pred eEEEEEcCCCChHHHHHHHh
Q 048597 102 GIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v 121 (294)
.+|.|.|+.|+||||+++.+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l 23 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRV 23 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999987
No 399
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.46 E-value=0.019 Score=44.63 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=19.8
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...-|.|+|.+|+|||||++.+.
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHH
Confidence 34678999999999999998874
No 400
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.45 E-value=0.018 Score=51.89 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=18.2
Q ss_pred EEEEcCCCChHHHHHHHhhC
Q 048597 104 IGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 104 i~I~G~~GiGKTtLa~~v~~ 123 (294)
|+|+|++|+|||||++.++.
T Consensus 34 I~lvG~sGaGKSTLln~L~g 53 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFL 53 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHhC
Confidence 59999999999999999854
No 401
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.45 E-value=0.02 Score=44.58 Aligned_cols=21 Identities=38% Similarity=0.355 Sum_probs=18.4
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
.--|.|+|.+|+|||||++.+
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l 25 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISY 25 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHH
Confidence 346899999999999999877
No 402
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.44 E-value=0.023 Score=46.77 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
....|+|+|.+|+|||||++.+..
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHcC
Confidence 567899999999999999999843
No 403
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.44 E-value=0.022 Score=49.09 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHhh
Q 048597 99 RNRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 99 ~~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.....|+|+|.+|+|||||.+.+.
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~ 31 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLL 31 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHh
Confidence 367899999999999999999883
No 404
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.43 E-value=0.021 Score=50.94 Aligned_cols=20 Identities=45% Similarity=0.549 Sum_probs=18.7
Q ss_pred eEEEEEcCCCChHHHHHHHh
Q 048597 102 GIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v 121 (294)
.+|.|.||.|+|||||+..+
T Consensus 3 ~~i~i~GptgsGKttla~~L 22 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQL 22 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHH
Confidence 58999999999999999887
No 405
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.42 E-value=0.022 Score=47.98 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCChHHHHHHHhh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...|+++|.+|+|||||.+.+.
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~ 24 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALT 24 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHh
Confidence 4679999999999999999983
No 406
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.40 E-value=0.016 Score=54.05 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
...+|.|+|++|+|||||++.+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHH
Confidence 347999999999999999998843
No 407
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.40 E-value=0.021 Score=44.34 Aligned_cols=23 Identities=35% Similarity=0.255 Sum_probs=19.6
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..--|.|+|.+|+|||||++.+.
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~ 29 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYT 29 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHh
Confidence 34568899999999999998884
No 408
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.38 E-value=0.021 Score=44.22 Aligned_cols=23 Identities=39% Similarity=0.369 Sum_probs=19.7
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..--|.|+|.+|+|||||++.+.
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~ 31 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFK 31 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHH
Confidence 34578999999999999998873
No 409
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.36 E-value=0.025 Score=44.97 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...-|.|+|.+|+|||||++.+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~ 29 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYV 29 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHH
Confidence 45689999999999999998873
No 410
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.36 E-value=0.02 Score=54.13 Aligned_cols=20 Identities=45% Similarity=0.664 Sum_probs=18.8
Q ss_pred eEEEEEcCCCChHHHHHHHh
Q 048597 102 GIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v 121 (294)
.+++|+|++|+|||||++.+
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l 398 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLL 398 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 57999999999999999998
No 411
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=94.35 E-value=0.05 Score=49.28 Aligned_cols=44 Identities=20% Similarity=0.339 Sum_probs=32.5
Q ss_pred eehhHHHHHHHHHHhcC---------CCCceEEEEEcCCCChHHHHHHHhhCh
Q 048597 81 IRQELLLDRVWRFVTDQ---------ERNRGIIGLYGTGGVGKTTLLKQRANL 124 (294)
Q Consensus 81 vGr~~~~~~l~~~L~~~---------~~~~~vi~I~G~~GiGKTtLa~~v~~~ 124 (294)
.|.++-++.+...+... ......|+|+|++|+|||||++.+...
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC
Confidence 46677777777776532 123468999999999999999998543
No 412
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.34 E-value=0.021 Score=45.01 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=19.4
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
..--|.|+|.+|+|||||++.+
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l 27 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRL 27 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHH
Confidence 3456899999999999999888
No 413
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.33 E-value=0.029 Score=45.76 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
....|.|+|.+|+|||||+..+.+
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999999843
No 414
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.33 E-value=0.016 Score=45.01 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.2
Q ss_pred ceEEEEEcCCCChHHHHHHHhh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.--|.++|.+|+|||||++.+.
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~ 28 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFL 28 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3568999999999999999883
No 415
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.32 E-value=0.025 Score=48.51 Aligned_cols=22 Identities=32% Similarity=0.681 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
..++|+|+|-||+||||++..+
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nL 61 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNL 61 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CceEEEEECCCCccHHHHHHHH
Confidence 6789999999999999999887
No 416
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.32 E-value=0.035 Score=51.34 Aligned_cols=22 Identities=27% Similarity=0.095 Sum_probs=19.4
Q ss_pred eEEEEEcCCCChHHHHHHHhhC
Q 048597 102 GIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
..++|+|+.|+|||||++.+..
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999998843
No 417
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.30 E-value=0.022 Score=45.09 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...-|.|+|.+|+|||||++.+.
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~ 49 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFL 49 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 44678999999999999998883
No 418
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.30 E-value=0.027 Score=44.48 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCChHHHHHHHhhCh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANL 124 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~ 124 (294)
....|.|+|.+|+|||||++.+.+.
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 5678999999999999999998543
No 419
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.28 E-value=0.023 Score=44.44 Aligned_cols=24 Identities=29% Similarity=0.337 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
...-|.|+|.+|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 557899999999999999998854
No 420
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.26 E-value=0.044 Score=49.91 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHh
Q 048597 83 QELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 83 r~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
....+..+...+..+. ..+.|.|++|+||||++..+
T Consensus 30 Q~~av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~ 65 (459)
T 3upu_A 30 QKNAFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFI 65 (459)
T ss_dssp HHHHHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHH
Confidence 3344555555555542 49999999999999998776
No 421
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.26 E-value=0.023 Score=45.19 Aligned_cols=22 Identities=36% Similarity=0.344 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCChHHHHHHHhh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..-|.|+|.+|+|||||++.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~ 29 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYA 29 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHh
Confidence 4578999999999999998884
No 422
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.26 E-value=0.022 Score=45.07 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...-|.|+|.+|+|||||++.+.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999999984
No 423
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.25 E-value=0.022 Score=44.85 Aligned_cols=23 Identities=30% Similarity=0.291 Sum_probs=19.7
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..--|.|+|.+|+|||||++.+.
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~ 44 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYA 44 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHh
Confidence 34578999999999999998874
No 424
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.25 E-value=0.023 Score=44.63 Aligned_cols=23 Identities=35% Similarity=0.309 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...-|.|+|.+|+|||||++.+.
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~ 43 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYA 43 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999998873
No 425
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.25 E-value=0.022 Score=45.60 Aligned_cols=23 Identities=39% Similarity=0.410 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...-|.|+|.+|+|||||++.+.
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~ 47 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFT 47 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHH
Confidence 45678999999999999998873
No 426
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.24 E-value=0.022 Score=44.95 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=19.8
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...-|.|+|.+|+|||||++.+.
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~ 29 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFV 29 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHH
Confidence 34678999999999999998883
No 427
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.23 E-value=0.041 Score=43.09 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
...-|.|+|.+|+|||||++.+..
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 456799999999999999998843
No 428
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.22 E-value=0.023 Score=44.91 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..--|.|+|..|+|||||++.+.
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~ 44 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFV 44 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHH
T ss_pred CceEEEEECcCCCCHHHHHHHHh
Confidence 34579999999999999998884
No 429
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.21 E-value=0.024 Score=44.65 Aligned_cols=23 Identities=39% Similarity=0.366 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...-|.|+|..|+|||||++.+.
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~ 37 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFA 37 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHH
Confidence 45679999999999999998873
No 430
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.21 E-value=0.024 Score=53.38 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l 389 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLI 389 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4479999999999999999998
No 431
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.20 E-value=0.024 Score=44.57 Aligned_cols=22 Identities=32% Similarity=0.244 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCChHHHHHHHhh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..-|.|+|.+|+|||||++.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~ 43 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIA 43 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999998883
No 432
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.20 E-value=0.023 Score=45.21 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...-|.|+|.+|+|||||++.+.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~ 45 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFV 45 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEEECCCCcCHHHHHHHHH
Confidence 45679999999999999998873
No 433
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.19 E-value=0.023 Score=45.63 Aligned_cols=23 Identities=35% Similarity=0.335 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...-|.|+|.+|+|||||++.+.
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~ 49 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFA 49 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHH
T ss_pred eeeEEEEECCCCCCHHHHHHHHh
Confidence 45678999999999999998873
No 434
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.19 E-value=0.028 Score=50.34 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.5
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.++.|+|++|+|||||+..+
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~l 198 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTL 198 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHH
Confidence 3479999999999999999955
No 435
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.19 E-value=0.024 Score=45.99 Aligned_cols=23 Identities=39% Similarity=0.372 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...-|.|+|.+|+|||||++.+.
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999998874
No 436
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.15 E-value=0.025 Score=44.55 Aligned_cols=22 Identities=36% Similarity=0.300 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCChHHHHHHHhh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.--|.|+|..|+|||||++.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~ 42 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFT 42 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHh
Confidence 4578999999999999998884
No 437
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.14 E-value=0.025 Score=44.63 Aligned_cols=23 Identities=39% Similarity=0.401 Sum_probs=19.8
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..--|.|+|.+|+|||||++.+.
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~ 44 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFS 44 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHH
T ss_pred eeeEEEEECcCCCCHHHHHHHHh
Confidence 34678999999999999998873
No 438
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.13 E-value=0.025 Score=44.65 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCChHHHHHHHhhCh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRANL 124 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~~~ 124 (294)
..-|.|+|..|+|||||++.+.+.
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999998653
No 439
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.13 E-value=0.025 Score=44.41 Aligned_cols=23 Identities=30% Similarity=0.193 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...-|.|+|..|+|||||++.+.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~ 41 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFC 41 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999998873
No 440
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.12 E-value=0.025 Score=45.11 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
..--|.|+|.+|+|||||++.+.+
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHh
Confidence 456789999999999999999854
No 441
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.12 E-value=0.025 Score=44.53 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCChHHHHHHHhhChh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANLK 125 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 125 (294)
...-|.|+|..|+|||||++.+.+..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 34678999999999999999986543
No 442
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.12 E-value=0.025 Score=45.39 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=19.1
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
....|.|+|.+|+|||||+..+.
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~ 28 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLL 28 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 45678999999999999999883
No 443
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.11 E-value=0.03 Score=51.72 Aligned_cols=41 Identities=10% Similarity=-0.080 Sum_probs=27.3
Q ss_pred eehhHHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHh
Q 048597 81 IRQELLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 81 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
+.+.+..+.+.+.......+..+|.+.|++|+||||+++.+
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~L 415 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIAL 415 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHH
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHH
Confidence 44444444444443222224579999999999999999876
No 444
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.09 E-value=0.025 Score=44.83 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
...-|.|+|.+|+|||||++.+.+
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999987744
No 445
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.06 E-value=0.027 Score=44.26 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCChHHHHHHHhh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..-|.|+|.+|+|||||++.+.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~ 36 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFT 36 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999998883
No 446
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.05 E-value=0.026 Score=45.04 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=19.8
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...-|.|+|.+|+|||||++.+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~ 29 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFS 29 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHh
Confidence 34678999999999999998873
No 447
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.05 E-value=0.027 Score=44.69 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCChHHHHHHHhhCh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANL 124 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~ 124 (294)
..--|.|+|.+|+|||||++.+.+.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999988654
No 448
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.04 E-value=0.027 Score=44.73 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...-|.|+|.+|+|||||++.+.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~ 49 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLC 49 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHH
Confidence 45789999999999999999984
No 449
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.99 E-value=0.026 Score=52.49 Aligned_cols=21 Identities=33% Similarity=0.254 Sum_probs=19.3
Q ss_pred CceEEEEEcCCCChHHHHHHH
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQ 120 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~ 120 (294)
.-.+++|+|++|+|||||++.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~ 58 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQ 58 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHH
Confidence 347999999999999999999
No 450
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.94 E-value=0.027 Score=45.39 Aligned_cols=24 Identities=42% Similarity=0.522 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
..--|.|+|.+|+|||||++.+.+
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 345789999999999999998864
No 451
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.86 E-value=0.026 Score=44.07 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
...-|.|+|..|+|||||++.+.+
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhc
Confidence 346789999999999999998854
No 452
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.85 E-value=0.029 Score=44.87 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCChHHHHHHHhh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..-|.|+|.+|+|||||++.+.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~ 46 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFS 46 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHh
Confidence 3579999999999999998884
No 453
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.85 E-value=0.031 Score=44.71 Aligned_cols=23 Identities=39% Similarity=0.411 Sum_probs=19.6
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...-|.|+|.+|+|||||+..+.
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~ 41 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFV 41 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHH
Confidence 34678999999999999998874
No 454
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.85 E-value=0.033 Score=44.10 Aligned_cols=20 Identities=30% Similarity=0.132 Sum_probs=17.4
Q ss_pred eEEEEEcCCCChHHHHHHHh
Q 048597 102 GIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v 121 (294)
.++.|+|+.|+||||++..+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~ 23 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSF 23 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 58889999999999998554
No 455
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.84 E-value=0.02 Score=44.67 Aligned_cols=24 Identities=33% Similarity=0.313 Sum_probs=11.0
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
...-|.|+|.+|+|||||++.+.+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEEEECCCCC-----------
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 346799999999999999998854
No 456
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.84 E-value=0.031 Score=45.80 Aligned_cols=20 Identities=35% Similarity=0.217 Sum_probs=17.3
Q ss_pred eEEEEEcCCCChHHHHHHHh
Q 048597 102 GIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v 121 (294)
-.|.+.|.||+||||++-.+
T Consensus 7 l~I~~~~kgGvGKTt~a~~l 26 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQA 26 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHH
Confidence 45889999999999997766
No 457
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.79 E-value=0.036 Score=51.45 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+|.++|++|+||||+++.+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~L 55 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKL 55 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999998
No 458
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.79 E-value=0.054 Score=44.33 Aligned_cols=37 Identities=19% Similarity=0.109 Sum_probs=27.1
Q ss_pred ceEEEEEcCCCChHHHHHHHh--------hChhHHHHHHHHHhCCC
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR--------ANLKKIQADIGKKIGLS 138 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v--------~~~~~i~~~i~~~~~~~ 138 (294)
..+|.|.|+.|+||||+++.+ ++ .++...++...+++
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~~~g~~ 58 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLASEKSAVG 58 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHHCC---
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHHHcCCC
Confidence 469999999999999999988 33 55666666666554
No 459
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.73 E-value=0.032 Score=43.96 Aligned_cols=22 Identities=41% Similarity=0.371 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCChHHHHHHHhh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..-|.|+|.+|+|||||++.+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~ 39 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYA 39 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHh
Confidence 4578999999999999998884
No 460
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.73 E-value=0.026 Score=45.63 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCChHHHHHHHhhCh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANL 124 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~ 124 (294)
....|.|+|..|+|||||++.+.+.
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4578999999999999999998553
No 461
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.71 E-value=0.037 Score=46.75 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCChHHHHHHHhhC
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
...|+++|.+|+|||||.+.+.+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHC
Confidence 45799999999999999999854
No 462
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.69 E-value=0.033 Score=44.44 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
...-|.|+|.+|+|||||++.+.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~ 50 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFK 50 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHh
Confidence 45689999999999999999984
No 463
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.68 E-value=0.036 Score=46.36 Aligned_cols=20 Identities=35% Similarity=0.758 Sum_probs=17.9
Q ss_pred eEEEEEcCCCChHHHHHHHh
Q 048597 102 GIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v 121 (294)
++|+|.|.||+||||++..+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nL 21 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNL 21 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHH
Confidence 57888899999999999887
No 464
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.66 E-value=0.034 Score=44.71 Aligned_cols=23 Identities=35% Similarity=0.335 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..--|.|+|..|+|||||++.+.
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~ 46 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYT 46 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHh
Confidence 45679999999999999999884
No 465
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.66 E-value=0.034 Score=44.28 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=19.1
Q ss_pred ceEEEEEcCCCChHHHHHHHhh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..-|.|+|.+|+|||||++.+.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~ 46 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFS 46 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999998874
No 466
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.66 E-value=0.039 Score=45.98 Aligned_cols=23 Identities=26% Similarity=0.187 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
....|+|+|.+|+|||||...+.
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~ 43 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSIL 43 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHh
Confidence 45689999999999999999884
No 467
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.66 E-value=0.033 Score=44.58 Aligned_cols=23 Identities=30% Similarity=0.208 Sum_probs=19.6
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..--|.|+|.+|+|||||+..+.
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~ 30 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYT 30 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHh
Confidence 34578999999999999998873
No 468
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=93.65 E-value=0.035 Score=49.09 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCChHHHHHHHhhChh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANLK 125 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 125 (294)
+.++|+|+|++|+|||||.+.+.+..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 46679999999999999999996654
No 469
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.64 E-value=0.034 Score=45.71 Aligned_cols=21 Identities=29% Similarity=0.216 Sum_probs=18.7
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-..++|.|++|+||||+++.+
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L 28 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFI 28 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHH
Confidence 357899999999999999988
No 470
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=93.63 E-value=0.035 Score=47.64 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
....|+|+|.+|+|||||++.+.
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~ 28 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLL 28 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHh
Confidence 45689999999999999999984
No 471
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.58 E-value=0.036 Score=44.72 Aligned_cols=22 Identities=36% Similarity=0.383 Sum_probs=19.2
Q ss_pred ceEEEEEcCCCChHHHHHHHhh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.--|.|+|.+|+|||||++.+.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~ 48 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLA 48 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHh
Confidence 4578899999999999998873
No 472
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.55 E-value=0.027 Score=53.18 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.-.+++|+|++|+|||||++.+
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l 401 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLL 401 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHH
Confidence 4579999999999999999998
No 473
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=93.55 E-value=0.051 Score=43.72 Aligned_cols=84 Identities=12% Similarity=0.101 Sum_probs=47.3
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC-----------hhHHHH-HHHHHhCCCCCCc------ccC---ChHHHHHHHHHH-
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN-----------LKKIQA-DIGKKIGLSTKSW------QEN---SFEDKALDIAGI- 157 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~-----------~~~i~~-~i~~~~~~~~~~~------~~~---~~~~~~~~l~~~- 157 (294)
...+|+|+|++|+||+|+|..+-+ +....+ ..+...++..... ... ........++..
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~d 89 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQAD 89 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhcC
Confidence 557999999999999999988632 223333 3555555432211 000 112222222221
Q ss_pred --------hc-cCCeEEEEccccCccchhhhcCCc
Q 048597 158 --------LS-RKRFVLLLDDIWEHINLNKLGVPL 183 (294)
Q Consensus 158 --------l~-~kr~LlvlDdv~~~~~~~~l~~~l 183 (294)
+. -..-.+|+||+....+.+.+...+
T Consensus 90 ~~~~~~~~~~~~~~~~vII~dvR~~~Ev~~fr~~~ 124 (202)
T 3ch4_B 90 PGFFCRKIVEGISQPIWLVSDTRRVSDIQWFREAY 124 (202)
T ss_dssp TTTTHHHHSBTCCCSEEEECCCCSHHHHHHHHHHH
T ss_pred chHHHHHHHHhcCCCcEEEeCCCCHHHHHHHHHhC
Confidence 11 112278999999888877776554
No 474
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.51 E-value=0.039 Score=46.15 Aligned_cols=21 Identities=33% Similarity=0.327 Sum_probs=19.0
Q ss_pred eEEEEEcCCCChHHHHHHHhh
Q 048597 102 GIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~ 122 (294)
+.|+++|.+|+|||||.+.+.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~ 22 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALT 22 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999984
No 475
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.50 E-value=0.044 Score=44.52 Aligned_cols=21 Identities=29% Similarity=0.267 Sum_probs=19.2
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
..+|.|.|+.|+||||+++.+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l 26 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYL 26 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHH
Confidence 468999999999999999887
No 476
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=93.50 E-value=0.046 Score=48.26 Aligned_cols=22 Identities=45% Similarity=0.490 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...-|.|.|.||+||||+++++
T Consensus 32 ~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 32 RLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CccEEEEECCCCCcHHHHHHHH
Confidence 5678899999999999999998
No 477
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=93.50 E-value=0.047 Score=43.94 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=18.6
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
..+..|+|+.|.||||+...+
T Consensus 23 ~~~~~I~G~NgsGKStil~ai 43 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAI 43 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHH
Confidence 368999999999999998765
No 478
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.48 E-value=0.039 Score=43.24 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=18.6
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-.-|.|.|++|+||||||..+
T Consensus 16 G~gvli~G~SGaGKStlal~L 36 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLAL 36 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHH
Confidence 367899999999999999876
No 479
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=93.43 E-value=0.04 Score=44.86 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=17.5
Q ss_pred EEEEEcCCCChHHHHHHHh
Q 048597 103 IIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 103 vi~I~G~~GiGKTtLa~~v 121 (294)
-|.|+|.+|+|||+|+..+
T Consensus 15 KivlvGd~~VGKTsLi~r~ 33 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRF 33 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHH
Confidence 5789999999999999987
No 480
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.42 E-value=0.044 Score=45.29 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.8
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+|.|.|+.|+||||+++.+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l 47 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVV 47 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999887
No 481
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=93.41 E-value=0.048 Score=47.96 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
....|+++|.+|+|||||++.+..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~ 189 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTT 189 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 567999999999999999999843
No 482
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.41 E-value=0.086 Score=44.67 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=25.7
Q ss_pred HHHHHHHHhcC----CCCceEEEEEcCCCChHHHHHHHh
Q 048597 87 LDRVWRFVTDQ----ERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 87 ~~~l~~~L~~~----~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
++++.+.|... ......|+|+|.+|+|||||+..+
T Consensus 8 ~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l 46 (299)
T 2aka_B 8 VNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENF 46 (299)
T ss_dssp HHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHH
Confidence 34455555431 235678999999999999999998
No 483
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=93.38 E-value=0.04 Score=46.49 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCChHHHHHHHhhCh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQRANL 124 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v~~~ 124 (294)
.--|.|+|.+|+|||||++.++..
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999997543
No 484
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.37 E-value=0.046 Score=46.37 Aligned_cols=21 Identities=33% Similarity=0.629 Sum_probs=18.6
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
.++|+|.|.||+||||++..+
T Consensus 2 MkvIavs~KGGvGKTT~a~nL 22 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNL 22 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHH
Confidence 367888999999999999887
No 485
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.36 E-value=0.036 Score=47.51 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHhh
Q 048597 99 RNRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 99 ~~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.....|+|+|..|+|||||...+.
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~ 45 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIV 45 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHH
Confidence 357899999999999999999983
No 486
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.35 E-value=0.041 Score=45.69 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
..-.|+|+|.+|+|||||++.+..
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCcHHHHHHHHhC
Confidence 456799999999999999999854
No 487
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=93.32 E-value=0.04 Score=49.11 Aligned_cols=24 Identities=29% Similarity=0.456 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
....++|+|++|+|||||.+.+.+
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Confidence 346899999999999999998843
No 488
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.32 E-value=0.056 Score=44.28 Aligned_cols=24 Identities=33% Similarity=0.318 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCChHHHHHHHhhC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
...+|.|.|+.|+||||+++.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999987743
No 489
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=93.29 E-value=0.044 Score=51.88 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCChHHHHHHHhhCh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRANL 124 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~~~ 124 (294)
.++.++|+|+.|+|||||++.+...
T Consensus 44 ~lp~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 44 ALPAIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CCCCEECCCCTTSCHHHHHHHHHSC
T ss_pred cCCeEEEECCCCChHHHHHHHHhCC
Confidence 5678999999999999999999443
No 490
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=93.28 E-value=0.0068 Score=49.93 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=18.0
Q ss_pred eEEEEEcCCCChHHHHHHHhh
Q 048597 102 GIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.+++|+|++|+|||||++.+.
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~ 48 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFV 48 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 366799999999999998873
No 491
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.26 E-value=0.047 Score=49.89 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
...+|.++|++|+||||+++.+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~L 59 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKL 59 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHH
Confidence 4568999999999999999998
No 492
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.23 E-value=0.19 Score=53.56 Aligned_cols=72 Identities=22% Similarity=0.264 Sum_probs=42.3
Q ss_pred CceEEEEEcCCCChHHHHHHHh-------------hChhHH-HHHHHHHhCCCCCCc---ccCChHHHHHHHHHHh-ccC
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR-------------ANLKKI-QADIGKKIGLSTKSW---QENSFEDKALDIAGIL-SRK 161 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v-------------~~~~~i-~~~i~~~~~~~~~~~---~~~~~~~~~~~l~~~l-~~k 161 (294)
..+.|.|+||+|+|||+||.++ ++.... ....+..++...... .....++....++... ..+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~ 1505 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 1505 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhcCC
Confidence 4589999999999999999888 111110 011144444321111 1223344455555444 356
Q ss_pred CeEEEEcccc
Q 048597 162 RFVLLLDDIW 171 (294)
Q Consensus 162 r~LlvlDdv~ 171 (294)
..+||+|++.
T Consensus 1506 ~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1506 VDVIVVDSVA 1515 (2050)
T ss_dssp CSEEEESCGG
T ss_pred CCEEEEcChh
Confidence 7899999995
No 493
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=93.21 E-value=0.033 Score=45.05 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=19.0
Q ss_pred CceEEEEEcCCCChHHHHHHHh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v 121 (294)
..--|.|+|.+|+|||||++.+
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~ 35 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRH 35 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTB
T ss_pred cceEEEEECCCCCCHHHHHHHH
Confidence 3457899999999999999885
No 494
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=93.20 E-value=0.051 Score=47.88 Aligned_cols=22 Identities=45% Similarity=0.847 Sum_probs=19.7
Q ss_pred eEEEEEcCCCChHHHHHHHhhC
Q 048597 102 GIIGLYGTGGVGKTTLLKQRAN 123 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~~ 123 (294)
.+.+|+|++|.|||||...++.
T Consensus 27 g~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHH
Confidence 4999999999999999988753
No 495
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.20 E-value=0.042 Score=54.55 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.-.+++|+|++|+|||||++.+.
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~La 482 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIA 482 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34689999999999999999984
No 496
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.18 E-value=0.079 Score=49.76 Aligned_cols=33 Identities=24% Similarity=0.226 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHh
Q 048597 85 LLLDRVWRFVTDQERNRGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 85 ~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v 121 (294)
.+..+.+..+... +++.|.|++|+||||++..+
T Consensus 192 ~~Q~~Av~~~~~~----~~~~I~G~pGTGKTt~i~~l 224 (574)
T 3e1s_A 192 EEQASVLDQLAGH----RLVVLTGGPGTGKSTTTKAV 224 (574)
T ss_dssp HHHHHHHHHHTTC----SEEEEECCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhC----CEEEEEcCCCCCHHHHHHHH
Confidence 3444555554433 78999999999999998887
No 497
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=93.17 E-value=0.051 Score=47.97 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=18.2
Q ss_pred eEEEEEcCCCChHHHHHHHhh
Q 048597 102 GIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 102 ~vi~I~G~~GiGKTtLa~~v~ 122 (294)
.+..|+|+.|.|||||...++
T Consensus 24 g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 478899999999999987763
No 498
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=93.17 E-value=0.035 Score=53.17 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=18.5
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
-.+++|+|++|+|||||++.+
T Consensus 348 Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 348 GTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp TSEEEEECSTTSSHHHHHTTT
T ss_pred CCEEEEEeeCCCCHHHHHHHH
Confidence 368999999999999999754
No 499
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.15 E-value=0.046 Score=44.29 Aligned_cols=23 Identities=39% Similarity=0.397 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCChHHHHHHHhh
Q 048597 100 NRGIIGLYGTGGVGKTTLLKQRA 122 (294)
Q Consensus 100 ~~~vi~I~G~~GiGKTtLa~~v~ 122 (294)
..--|.|+|.+|+|||||++.+.
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~ 34 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFT 34 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHH
T ss_pred eeeEEEEECcCCCCHHHHHHHHh
Confidence 34578999999999999999883
No 500
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=93.12 E-value=0.053 Score=47.29 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=19.0
Q ss_pred ceEEEEEcCCCChHHHHHHHh
Q 048597 101 RGIIGLYGTGGVGKTTLLKQR 121 (294)
Q Consensus 101 ~~vi~I~G~~GiGKTtLa~~v 121 (294)
..+..|+|+.|.|||||+..+
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi 43 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAI 43 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 478899999999999998877
Done!