Query 048598
Match_columns 335
No_of_seqs 269 out of 1850
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 11:02:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048598.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048598hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02164 sulfotransferase 100.0 3.3E-80 7.2E-85 585.5 27.6 307 18-326 31-344 (346)
2 KOG1584 Sulfotransferase [Gene 100.0 4.7E-80 1E-84 561.7 25.0 292 29-328 1-297 (297)
3 PF00685 Sulfotransfer_1: Sulf 100.0 1.6E-39 3.5E-44 297.2 12.3 248 65-322 1-267 (267)
4 PF13469 Sulfotransfer_3: Sulf 98.9 3.6E-10 7.9E-15 98.3 2.3 24 223-248 191-214 (215)
5 KOG3988 Protein-tyrosine sulfo 98.8 1.9E-09 4.1E-14 97.5 0.6 165 130-324 153-328 (378)
6 PF09037 Sulphotransf: Stf0 su 97.8 4.1E-06 8.9E-11 76.6 0.4 90 152-248 113-219 (245)
7 KOG3704 Heparan sulfate D-gluc 97.4 0.00017 3.7E-09 65.4 4.4 159 150-328 188-360 (360)
8 KOG3703 Heparan sulfate N-deac 96.7 0.0092 2E-07 59.3 9.0 93 151-245 686-790 (873)
9 KOG3922 Sulfotransferases [Pos 92.1 0.065 1.4E-06 49.7 1.1 102 66-175 79-183 (361)
10 PF03567 Sulfotransfer_2: Sulf 91.7 0.056 1.2E-06 48.3 0.3 24 152-175 78-101 (253)
11 PF06990 Gal-3-0_sulfotr: Gala 90.5 0.47 1E-05 46.6 5.4 108 61-175 63-171 (402)
12 KOG4157 beta-1,6-N-acetylgluco 77.1 1.5 3.3E-05 43.0 2.0 203 59-313 198-405 (418)
13 COG4424 Uncharacterized protei 66.7 5.5 0.00012 35.3 2.9 51 218-270 188-238 (250)
14 PF13671 AAA_33: AAA domain; P 50.8 15 0.00032 29.6 2.8 21 68-88 2-23 (143)
15 COG4424 Uncharacterized protei 47.2 22 0.00048 31.6 3.3 28 66-93 6-33 (250)
16 KOG4651 Chondroitin 6-sulfotra 46.1 5.3 0.00011 38.1 -0.7 30 65-94 81-110 (324)
17 PF03205 MobB: Molybdopterin g 44.1 25 0.00054 29.0 3.2 25 68-92 3-28 (140)
18 COG1158 Rho Transcription term 42.7 22 0.00048 34.1 2.9 27 65-91 173-200 (422)
19 cd00808 GluRS_core catalytic c 40.6 49 0.0011 30.1 4.7 53 194-248 12-69 (239)
20 COG4088 Predicted nucleotide k 36.7 34 0.00074 30.8 2.9 25 68-92 4-29 (261)
21 PRK14489 putative bifunctional 36.2 33 0.00072 33.2 3.1 28 65-92 205-233 (366)
22 PF13207 AAA_17: AAA domain; P 35.0 41 0.00089 26.1 3.0 21 68-88 2-22 (121)
23 cd00227 CPT Chloramphenicol (C 32.5 41 0.00089 28.5 2.8 22 67-88 4-26 (175)
24 PF08433 KTI12: Chromatin asso 31.5 42 0.00092 31.1 2.8 23 68-90 4-27 (270)
25 PF01498 HTH_Tnp_Tc3_2: Transp 31.3 85 0.0018 22.2 3.9 62 226-318 7-71 (72)
26 PF07498 Rho_N: Rho terminatio 30.4 58 0.0012 21.1 2.6 36 226-261 1-36 (43)
27 PRK04040 adenylate kinase; Pro 30.2 47 0.001 28.8 2.8 21 68-88 5-26 (188)
28 TIGR00073 hypB hydrogenase acc 30.2 48 0.001 29.0 2.9 25 65-89 22-47 (207)
29 PRK10751 molybdopterin-guanine 30.2 53 0.0011 28.3 3.0 25 67-91 8-33 (173)
30 TIGR03574 selen_PSTK L-seryl-t 30.0 47 0.001 30.0 2.9 22 68-89 2-24 (249)
31 PF07582 AP_endonuc_2_N: AP en 27.5 1.8E+02 0.0039 20.1 4.7 28 217-244 15-42 (55)
32 TIGR00176 mobB molybdopterin-g 25.6 74 0.0016 26.6 3.1 25 68-92 2-27 (155)
33 PRK14493 putative bifunctional 25.4 70 0.0015 29.7 3.2 25 68-92 4-29 (274)
34 PF08477 Miro: Miro-like prote 25.3 67 0.0015 24.6 2.7 20 68-87 2-22 (119)
35 KOG1532 GTPase XAB1, interacts 24.6 94 0.002 29.3 3.7 35 59-93 13-48 (366)
36 COG1763 MobB Molybdopterin-gua 23.9 70 0.0015 27.2 2.6 24 69-92 6-30 (161)
37 PF13238 AAA_18: AAA domain; P 23.5 85 0.0018 24.2 3.0 21 68-88 1-22 (129)
38 PF02492 cobW: CobW/HypB/UreG, 23.2 67 0.0015 27.3 2.5 19 68-86 3-22 (178)
39 cd00807 GlnRS_core catalytic c 23.0 1.6E+02 0.0034 26.9 4.9 53 194-248 12-69 (238)
40 cd00984 DnaB_C DnaB helicase C 22.4 85 0.0019 27.8 3.1 28 64-91 11-40 (242)
41 TIGR03715 KxYKxGKxW KxYKxGKxW 22.2 71 0.0015 18.8 1.7 15 74-88 7-21 (29)
42 cd02019 NK Nucleoside/nucleoti 20.9 1.1E+02 0.0024 21.5 2.8 21 68-88 2-23 (69)
43 PRK07261 topology modulation p 20.5 91 0.002 26.4 2.7 19 68-86 3-22 (171)
44 cd01038 Endonuclease_DUF559 Do 20.1 1.3E+02 0.0028 23.5 3.3 27 216-242 81-107 (108)
No 1
>PLN02164 sulfotransferase
Probab=100.00 E-value=3.3e-80 Score=585.53 Aligned_cols=307 Identities=42% Similarity=0.830 Sum_probs=267.3
Q ss_pred HhHHHHHHhcCCCCCC-C-CCcceeeCcEEcCchhhHHHHHhhhccccCCCCEEEEcCCCccchHHHHHHHHHhccCCcc
Q 048598 18 KENQELILSQLRKEKG-D-GFYFCEYQGFWCPEPAINAVISFQKHFQAQESDVILATYPKSGTTWLKALTFTIMNRSRFE 95 (335)
Q Consensus 18 ~~~~~~~~~~~p~~~~-~-~~~~~~~~g~~~~~~~~~~~~~~~~~f~~r~~DV~i~syPKSGTTWl~~il~~i~~~~~~~ 95 (335)
++|++++ +|||+++| . ...++.|+|+|+|..+.++++.++.+|++|++||||||||||||||||+|+++|++++.++
T Consensus 31 ~~~~~~~-~~lp~~~~~~~~~~~~~y~G~w~~~~~~~~~~~~~~~f~~r~~DV~laSyPKsGTTWlq~iv~~i~~~~~~~ 109 (346)
T PLN02164 31 KRYQDLI-ATLPHKKGWRPKEPLIEYGGHWWLQPLLEGLLHAQEFFQARPNDFLVCSYPKTGTTWLKALTFAIANRSRFD 109 (346)
T ss_pred HHHHHHH-hhCCCCcCCCCCCCeEEECCEEechhhhHHHHHHHHcCCCCCCCEEEEcCCCchhHHHHHHHHHHHcCCCcc
Confidence 3799999 99999999 3 4448899999999987899999999999999999999999999999999999999988876
Q ss_pred cCCCCCcCCCccccccchhcccccCCCCCCcccCCCCceEEeccCCCCCCccccCCCCeEEEEeeCCCceeEEeehhhhc
Q 048598 96 LQNSPLHTTTLHQLVPFLEFDLYLNHQSPNFECFSAPRIFATHVPHALLPGSILNSGCRIVYVCRNPLDQFISEWLFIAR 175 (335)
Q Consensus 96 ~~~~~l~~~~~~~~~p~lE~~~~~~~~~~~~~~~~~pR~ikTHlp~~~lp~~l~~~~~KiI~ivRdPrDv~vS~y~~~~~ 175 (335)
...+|+...+|++++||||.......+.+.+.. ++||+||||+|++++|.++.+++||+|||+|||+|++||+|||...
T Consensus 110 ~~~~pl~~~~p~~~vP~lE~~~~~~~~~~~l~~-~~PRlikTHlp~~~lP~~i~~~~~KiIyv~RnPkDv~VS~yhf~~~ 188 (346)
T PLN02164 110 DSSNPLLKRNPHEFVPYIEIDFPFFPSVDVLKD-KGNTLFSTHIPYGLLPDSVVKSGCKMVYIWRDPKDTFISMWTFLHK 188 (346)
T ss_pred cccCcccccCccccCCceecccCCCCchhhhcc-CCCCeeEecCChhhCccccccCCceEEEEecCchhheeeHHHHHhh
Confidence 556788888899999999976432212334443 6899999999999999999999999999999999999999998876
Q ss_pred -cCC-CCCCCHHHHHHHhccCccccCchHHHHHHHHHHhhcCCCeEEEEechhhhhcHHHHHHHHHHHhCCCCChHhhhh
Q 048598 176 -TQD-KEPSDLAEAFERACNGIQIFGPIWEHALGYWRASIEQPDKIFFLKYEDLKEDIASCINRLADFLGCPLSEEEVTQ 253 (335)
Q Consensus 176 -~~~-~~~~~~~~~~~~f~~g~~~~g~~~~hv~~~w~~~~~~~~~vl~v~YEDL~~d~~~~v~rI~~FLG~~~~~~~~~~ 253 (335)
... ...++|+++++.||+|...+|+||+|+++||+...+.++|||+|+||||++||.++|++||+|||++++++++++
T Consensus 189 ~~~~~~~~~s~ee~~e~f~~g~~~~G~y~dHv~~yw~~~~~~p~~VLfl~YEDmk~D~~~~v~ria~FLG~~~s~ee~~~ 268 (346)
T PLN02164 189 ERSQQGPLNSLEESFDMFCRGLSVYGPYLDHVLGYWKAYQENPDRILFLKYETMRADPLPYVKRLAEFMGYGFTAEEEEK 268 (346)
T ss_pred ccccCCCCCCHHHHHHHHHcCCCCCCcHHHHHHHHHHHhhcCCccEEEEEHHHHHHhHHHHHHHHHHHhCCCCchhhcch
Confidence 322 234689999999999999999999999999998544566999999999999999999999999999999887778
Q ss_pred HHHHHHHHhcChHHHHhhhhhccCCcc-c--CCCCCCCceecCccCCCccCCcHHHHHHHHHHHHHHcCCCCceee
Q 048598 254 GVVEEISKLCSFDYIQNLEVTKTGRAY-A--NGVKNSHYLRKGEVGDWKNYLTPSMSERLEKIIEEKLAGSGLTFK 326 (335)
Q Consensus 254 ~~l~~iv~~~Sf~~mk~~~~~~~~~~~-~--~~~~~~~f~RkG~vGdWk~~ft~eq~~~~~~~~~e~l~~~gl~f~ 326 (335)
+++++|+++|||++||++++|..+... . .....+.|||||++|||||+||+||+++|+++++++|+|+|+.|.
T Consensus 269 ~~v~~ive~~SFe~Mk~~e~n~~~~~~~~~~~~~~~~~FfRKG~vGdWkn~lt~e~~~r~d~~~~ekl~gsgl~~~ 344 (346)
T PLN02164 269 GVVEKVVKLCSFETLKNLEANKGEKDREDRPAVYANSAYFRKGKVGDWQNYLTPEMAARIDGLMEEKFKGTGLLEH 344 (346)
T ss_pred HHHHHHHHHCCHHHHhhhHhhccccccccccccccCcceeeccCCCCCcccCCHHHHHHHHHHHHHHhcCCCCccc
Confidence 889999999999999998776654310 0 012456799999999999999999999999999999999999985
No 2
>KOG1584 consensus Sulfotransferase [General function prediction only]
Probab=100.00 E-value=4.7e-80 Score=561.68 Aligned_cols=292 Identities=50% Similarity=0.915 Sum_probs=252.4
Q ss_pred CCCCC--CCCcceeeCcEEcCchhhHHHHHhhhccccCCCCEEEEcCCCccchHHHHHHHHHhccCCcccCC-CCCcCCC
Q 048598 29 RKEKG--DGFYFCEYQGFWCPEPAINAVISFQKHFQAQESDVILATYPKSGTTWLKALTFTIMNRSRFELQN-SPLHTTT 105 (335)
Q Consensus 29 p~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~r~~DV~i~syPKSGTTWl~~il~~i~~~~~~~~~~-~~l~~~~ 105 (335)
|..++ +...++.|+|+|++..+.+.+...+++|++|||||+||||||||||||++|+++|+++++++... +||...+
T Consensus 1 p~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~Fq~r~dDiiiaTyPKsGTTWlkel~~~i~~~~d~~~~~~~pL~~~~ 80 (297)
T KOG1584|consen 1 PSEKGSRGRFKLVEYQGCWYPPKFLQALLRVQKHFQARPDDVIIATYPKSGTTWLQELTFLILNRGDFEKAKRHPLLERN 80 (297)
T ss_pred CCccCcCCCcCeEEECCEEecHHHHHHHHHHHhcCCCCCCCEEEEecCCCchHHHHHHHHHHHcCCCcccccCCchhhcC
Confidence 45666 33678899999999999999999999999999999999999999999999999999999887654 8888888
Q ss_pred ccccccchhcccccCCCCCCcccCCCCceEEeccCCCCCCccccCCCCeEEEEeeCCCceeEEeehhhhc-cCCCCCCCH
Q 048598 106 LHQLVPFLEFDLYLNHQSPNFECFSAPRIFATHVPHALLPGSILNSGCRIVYVCRNPLDQFISEWLFIAR-TQDKEPSDL 184 (335)
Q Consensus 106 ~~~~~p~lE~~~~~~~~~~~~~~~~~pR~ikTHlp~~~lp~~l~~~~~KiI~ivRdPrDv~vS~y~~~~~-~~~~~~~~~ 184 (335)
|+..+|++|.... +...+.+++|||+++||+|+++||.++++++|||||++|||+||+||+|||.+. .....+++|
T Consensus 81 P~~e~p~~e~~~~---~~~~~~~l~SPRl~kTHlP~~lLp~s~~~~~cKvVYv~RNpKD~~VSy~hf~~~~~~~~~~~~~ 157 (297)
T KOG1584|consen 81 PHLEVPFLELQLY---GNDSAPDLPSPRLFKTHLPFQLLPESLKESKCKVVYVCRNPKDVLVSYYHFNRMLKTQPGPGTF 157 (297)
T ss_pred Cceeecccccccc---cccccccCCCCcceeccCChhhcchhhhcCCCcEEEEecCccceeeeHHHHHhhhccCCCCCcH
Confidence 8888888876554 345666778999999999999999999999999999999999999999999998 666777789
Q ss_pred HHHHHHhccCccccCchHHHHHHHHHHhhcCCCeEEEEechhhhhcHHHHHHHHHHHhCCCCChHhhhhHHHHHHHHhcC
Q 048598 185 AEAFERACNGIQIFGPIWEHALGYWRASIEQPDKIFFLKYEDLKEDIASCINRLADFLGCPLSEEEVTQGVVEEISKLCS 264 (335)
Q Consensus 185 ~~~~~~f~~g~~~~g~~~~hv~~~w~~~~~~~~~vl~v~YEDL~~d~~~~v~rI~~FLG~~~~~~~~~~~~l~~iv~~~S 264 (335)
++|++.||+|.+.||+||+||++||+. ++++||||++||||++||..+|+|||+|||.++++++++.++.+.+++.|+
T Consensus 158 e~~fe~F~~G~~~~Gp~~dHVl~~W~~--~~~~~VLFl~YEdmk~dp~~~ikrlaeFLg~~~~~Ee~~~~~~~~~~~~~~ 235 (297)
T KOG1584|consen 158 EEFFESFCNGVVPYGPWWDHVLGYWEL--EDPKNVLFLKYEDMKADPKGEIKKLAEFLGCPFTKEEEDKGVVHLSFELCS 235 (297)
T ss_pred HHHHHHHhCCcCCcCChHHHHHHHHHh--cCCCceEEEEHHHhhhCHHHHHHHHHHHhCCCCCHHHHhhhhHHHHHHHHh
Confidence 999999999999999999999999995 467899999999999999999999999999999999844444444444455
Q ss_pred hHHHHhhhhhccCCcccCCCCCCCceecCccCCCccCCcHHHHHHHHHHHHHHcCC-CCceeecC
Q 048598 265 FDYIQNLEVTKTGRAYANGVKNSHYLRKGEVGDWKNYLTPSMSERLEKIIEEKLAG-SGLTFKTS 328 (335)
Q Consensus 265 f~~mk~~~~~~~~~~~~~~~~~~~f~RkG~vGdWk~~ft~eq~~~~~~~~~e~l~~-~gl~f~~~ 328 (335)
++.|++.+.|+.+. .....+.|||||.+||||||||++|+++||.+++++|++ +||+|.++
T Consensus 236 ~n~l~nle~n~~~~---~~~~~~~F~RKG~vGDWKn~~T~~~~ekfD~~~eekm~g~sgL~F~~~ 297 (297)
T KOG1584|consen 236 LNPLSNLEVNKTEK---LLHKISPFFRKGEVGDWKNYLTPEMNEKFDKIYEEKMEGCSGLKFRTE 297 (297)
T ss_pred hccccCceeccccc---ccccchhhhcCCCcccccccCCHHHHHHHHHHHHHHhcCCCCcccccC
Confidence 55555444554443 112337899999999999999999999999999999999 89999764
No 3
>PF00685 Sulfotransfer_1: Sulfotransferase domain; InterPro: IPR000863 This family includes a range of sulphotransferase proteins including flavonyl 3-sulphotransferase, aryl sulphotransferase, alcohol sulphotransferase, oestrogen sulphotransferase and phenol-sulphating phenol sulphotransferase. These enzymes are responsible for the transfer of sulphate groups to specific compounds.; GO: 0008146 sulfotransferase activity; PDB: 3MGC_A 3MGB_A 3MG9_A 1G3M_B 1HY3_B 2QP4_A 3F3Y_C 1EFH_A 1OV4_A 1J99_A ....
Probab=100.00 E-value=1.6e-39 Score=297.15 Aligned_cols=248 Identities=27% Similarity=0.517 Sum_probs=181.3
Q ss_pred CCCEEEEcCCCccchHHHHHHHHHhccCCcccCCCCCcCCCccccccchhccc-----------------ccCCCCCCcc
Q 048598 65 ESDVILATYPKSGTTWLKALTFTIMNRSRFELQNSPLHTTTLHQLVPFLEFDL-----------------YLNHQSPNFE 127 (335)
Q Consensus 65 ~~DV~i~syPKSGTTWl~~il~~i~~~~~~~~~~~~l~~~~~~~~~p~lE~~~-----------------~~~~~~~~~~ 127 (335)
|.+|||+|+||||||||.+||..............+..... ....|+++... ........+.
T Consensus 1 ~~~i~I~g~prSGTt~l~~lL~~h~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (267)
T PF00685_consen 1 PPPIFIVGAPRSGTTWLRELLNSHPDIFSFSPFKEPHFFNN-RDYSPFLEWYRDFFPFRIKPQEHIPSFSHVESKIVRLR 79 (267)
T ss_dssp TTSEEEEESTTSSHHHHHHHHHHHHTTTETHHHTSSHHTTT-HHHSTBTTHHHHTSHEEGTTTEEEGGCTTTETHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHhCcccccccccccccccch-hhhhhhhhhhhcccccccccccccccccccchhHHHHh
Confidence 57999999999999999999999764333210001111111 23455554310 0000011234
Q ss_pred cCCCCceEEeccCCCCCCccccCCCCeEEEEeeCCCceeEEeehhhhc-cCCCCCCC-HHHHHHHhccCccccCchHHHH
Q 048598 128 CFSAPRIFATHVPHALLPGSILNSGCRIVYVCRNPLDQFISEWLFIAR-TQDKEPSD-LAEAFERACNGIQIFGPIWEHA 205 (335)
Q Consensus 128 ~~~~pR~ikTHlp~~~lp~~l~~~~~KiI~ivRdPrDv~vS~y~~~~~-~~~~~~~~-~~~~~~~f~~g~~~~g~~~~hv 205 (335)
..+.+++++||+++..++..+..+++|+|+|+|||+|+++|.+++... ......+. ++++++.++.....++.|++++
T Consensus 80 ~~~~~~~~~~H~~~~~~~~~~~~~~~KiI~ivRdP~d~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (267)
T PF00685_consen 80 DLPSPRFIKTHLPLDLLPKKLLFPNAKIIYIVRDPRDVIVSRYKHSWRSNPFSDPGQRFEEFVDWFLQPRLLYGSWADHL 159 (267)
T ss_dssp CSCSSEEEEE-S-GGGSHHHHHHTTEEEEEEE--HHHHHHHHHHHHHHBTTSTTHHSHHHHHHHHHHTTHSTTSCHHHHH
T ss_pred hccCchhhhhccccccccccccccccccceecccccchhHHHHHHHHhcccccccchhhhhhhhhhhccccccccccccc
Confidence 557899999999998887655568999999999999999999998876 32222233 7888888888888889999999
Q ss_pred HHHHHHhhcCCCeEEEEechhhhhcHHHHHHHHHHHhCCCCChHhhhhHHHHHHHHhcChHHHHhhhhhccCCcccCCCC
Q 048598 206 LGYWRASIEQPDKIFFLKYEDLKEDIASCINRLADFLGCPLSEEEVTQGVVEEISKLCSFDYIQNLEVTKTGRAYANGVK 285 (335)
Q Consensus 206 ~~~w~~~~~~~~~vl~v~YEDL~~d~~~~v~rI~~FLG~~~~~~~~~~~~l~~iv~~~Sf~~mk~~~~~~~~~~~~~~~~ 285 (335)
..||... .++++++|+||||+.||.+++++|++|||++++++. ++.++++++|+.|+......... .....
T Consensus 160 ~~~~~~~--~~~~~~~i~YEdl~~dp~~~l~~I~~FLgl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 230 (267)
T PF00685_consen 160 KSWLSSF--DRDNVLIIRYEDLVADPEKELKRICDFLGLPFSDEP-----LDKIVEKSSFDNMRSKEARNKSK--LSDGS 230 (267)
T ss_dssp HHHHHHT--TTSTEEEEEHHHHHHSHHHHHHHHHHHTTSS--HHH-----HHHHHHHTSHHHHHHETTTSSTT--SCTTT
T ss_pred cchhhhh--ccchhhhhcchhhhhhhhHHHHHHHHHHhhccchhh-----hHHHHHhhhhhhhcccccccccc--cccCC
Confidence 9999853 456999999999999999999999999999999887 99999999999999754322110 00013
Q ss_pred CCCceecCccCCCccCCcHHHHHHHHHHHHHHcCCCC
Q 048598 286 NSHYLRKGEVGDWKNYLTPSMSERLEKIIEEKLAGSG 322 (335)
Q Consensus 286 ~~~f~RkG~vGdWk~~ft~eq~~~~~~~~~e~l~~~g 322 (335)
...++|+|.+|+||++||+++++.|+++|++.|+.+|
T Consensus 231 ~~~~~~~~~~~~W~~~l~~e~~~~i~~~~~~~m~~~~ 267 (267)
T PF00685_consen 231 SSRFFRKGKSGRWKNELSPEQIDRIERICGDAMRELG 267 (267)
T ss_dssp TSTSSEET-STGGGGTSBHHHHHHHHHHHHHHHTTSS
T ss_pred cceeeeecccCcccccCCHHHHHHHHHHHHHHHccCC
Confidence 4678999999999999999999999999999999987
No 4
>PF13469 Sulfotransfer_3: Sulfotransferase family; PDB: 3AP1_B 3AP3_B 3AP2_B 3RNL_A 2Z6V_A 2ZQ5_A.
Probab=98.93 E-value=3.6e-10 Score=98.30 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=18.5
Q ss_pred echhhhhcHHHHHHHHHHHhCCCCCh
Q 048598 223 KYEDLKEDIASCINRLADFLGCPLSE 248 (335)
Q Consensus 223 ~YEDL~~d~~~~v~rI~~FLG~~~~~ 248 (335)
+||||.+||.+++++||+ + +++++
T Consensus 191 ~yedl~~~p~~~l~~i~~-~-~~l~~ 214 (215)
T PF13469_consen 191 RYEDLVADPEATLRRICA-L-LELTR 214 (215)
T ss_dssp EHHHHHHSHHHHHHHHHH-C-----H
T ss_pred CHHHHHHCHHHHHHHHHH-h-hCCcC
Confidence 679999999999999999 7 77653
No 5
>KOG3988 consensus Protein-tyrosine sulfotransferase TPST1/TPST2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.9e-09 Score=97.48 Aligned_cols=165 Identities=18% Similarity=0.243 Sum_probs=93.7
Q ss_pred CCCceEEeccCCCCCCccc---cCCCCeEEEEeeCCCceeEEeehhhhc-cCCCCCCCHHHHHHHhccCccccCchHHHH
Q 048598 130 SAPRIFATHVPHALLPGSI---LNSGCRIVYVCRNPLDQFISEWLFIAR-TQDKEPSDLAEAFERACNGIQIFGPIWEHA 205 (335)
Q Consensus 130 ~~pR~ikTHlp~~~lp~~l---~~~~~KiI~ivRdPrDv~vS~y~~~~~-~~~~~~~~~~~~~~~f~~g~~~~g~~~~hv 205 (335)
+.||+. -.-||.+..... ..|++|+++++||.|.++-|..- ++ ... ..+..++-+.+. -|.+.
T Consensus 153 ~AprLC-NKDPftlk~~~yl~rLfPNAKfllMvRDgRAtVhSmIs--RKVtIa--Gfdlssyr~c~t--------kWN~a 219 (378)
T KOG3988|consen 153 PAPRLC-NKDPFTLKSLVYLSRLFPNAKFLLMVRDGRATVHSMIS--RKVTIA--GFDLSSYRQCMT--------KWNQA 219 (378)
T ss_pred cccccc-cCCchHHHHHHHHHHHCCCceEEEEEecchHHHHHHHh--ccceec--cccchHHHHHHH--------HHHHH
Confidence 456654 355665432111 14899999999999998877543 12 111 112233322211 13322
Q ss_pred HHHH--HHhhcCCCeEEEEechhhhhcHHHHHHHHHHHhCCCCChHhhhhHHHH--HHHHh---cChHHHHhhhhhccCC
Q 048598 206 LGYW--RASIEQPDKIFFLKYEDLKEDIASCINRLADFLGCPLSEEEVTQGVVE--EISKL---CSFDYIQNLEVTKTGR 278 (335)
Q Consensus 206 ~~~w--~~~~~~~~~vl~v~YEDL~~d~~~~v~rI~~FLG~~~~~~~~~~~~l~--~iv~~---~Sf~~mk~~~~~~~~~ 278 (335)
..-- ....-...+.+.|.||.|+..|++.+++|.+||++|+++.. +. ..+-. .|.. +.+ .+..
T Consensus 220 ie~M~~QC~~vg~~~Cl~VyYEqLVlhPe~~mr~Il~FLdipw~d~v-----LhHedlIgk~~gVsLs---kvE--rSsd 289 (378)
T KOG3988|consen 220 IEVMYFQCMEVGKKKCLKVYYEQLVLHPEEWMRRILKFLDIPWSDAV-----LHHEDLIGKPGGVSLS---KVE--RSSD 289 (378)
T ss_pred HHHHHHHHHhccccchhHHHHHHHHhCHHHHHHHHHHHhCCCcHHHH-----HhHHHhcCCCCCCChh---hhh--ccHh
Confidence 2111 11111234899999999999999999999999999999864 21 11100 0100 000 0000
Q ss_pred cccCCCCCCCceecCccCCCccCCcHHHHHHHHHHHHHHcCCCCce
Q 048598 279 AYANGVKNSHYLRKGEVGDWKNYLTPSMSERLEKIIEEKLAGSGLT 324 (335)
Q Consensus 279 ~~~~~~~~~~f~RkG~vGdWk~~ft~eq~~~~~~~~~e~l~~~gl~ 324 (335)
.-..-+.-+---.|-.+++++-.+.++.+ +.-|+.+||.
T Consensus 290 ------QVikpVNl~AlskWvg~ip~dvvrdma~i-APmL~~LGYD 328 (378)
T KOG3988|consen 290 ------QVIKPVNLEALSKWVGCIPEDVVRDMADI-APMLAILGYD 328 (378)
T ss_pred ------hhhccccHHHHHHHhccCCHHHHHHHHHH-HHHHHHhCCC
Confidence 00011223445589999999999998876 5778888875
No 6
>PF09037 Sulphotransf: Stf0 sulphotransferase; InterPro: IPR024628 Members of this family are essential for the biosynthesis of sulpholipid-1 in prokaryotes. They adopt a structure that belongs to the sulphotransferase superfamily, consisting of a single domain with a core four-stranded parallel beta-sheet flanked by alpha-helices []. ; PDB: 1TEX_B.
Probab=97.84 E-value=4.1e-06 Score=76.56 Aligned_cols=90 Identities=21% Similarity=0.238 Sum_probs=47.7
Q ss_pred CCeEEEEee-CCCceeEEeehhhhccC-C--C-----C--------CCCHHHHHHHhccCccccCchHHHHHHHHHHhhc
Q 048598 152 GCRIVYVCR-NPLDQFISEWLFIARTQ-D--K-----E--------PSDLAEAFERACNGIQIFGPIWEHALGYWRASIE 214 (335)
Q Consensus 152 ~~KiI~ivR-dPrDv~vS~y~~~~~~~-~--~-----~--------~~~~~~~~~~f~~g~~~~g~~~~hv~~~w~~~~~ 214 (335)
+.++||+.| |...-+||++.-...+. + . . ..++++... .+.-... .-.....|...
T Consensus 113 ~~~~I~L~R~d~l~QAvS~~~A~qtg~w~~~~~~~~~~r~~~~~~~~yd~~~i~~-~i~~i~~---~~~~w~~~f~~--- 185 (245)
T PF09037_consen 113 DVKFIHLRRRDLLRQAVSLWRARQTGVWHQHADGTRDERVSPPRKPRYDFEEIAH-LIDRIED---QEAFWRNWFAR--- 185 (245)
T ss_dssp S-EEEEEE-S-HHHHHHHHHHHHHHS-----------TT----------HHHHHH-HHHHHHH---HHHHHHHHHHH---
T ss_pred CeEEEEEEeCCHHHHHHHHHHHHhCCCcccCCCCCccccccccccceeCHHHHHH-HHHHHHH---HHHHHHHHHHH---
Confidence 499999997 99999999887443311 0 0 0 011111111 1100000 00111233332
Q ss_pred CCCeEEEEechhhhhcHHHHHHHHHHHhCCCCCh
Q 048598 215 QPDKIFFLKYEDLKEDIASCINRLADFLGCPLSE 248 (335)
Q Consensus 215 ~~~~vl~v~YEDL~~d~~~~v~rI~~FLG~~~~~ 248 (335)
...+-+.|.||||.+||.+++.+|++|||++...
T Consensus 186 ~~i~pl~i~YEdL~~dp~~~~~~Vl~fLgv~~~~ 219 (245)
T PF09037_consen 186 HGIEPLEITYEDLLADPQKTVARVLDFLGVDPPL 219 (245)
T ss_dssp TT---EEEEHHHHHHHHHHHHHHHHHHTTS-GGG
T ss_pred cCCCeeEEEHHHHHhCHHHHHHHHHHHhCCCCcc
Confidence 2234588999999999999999999999997543
No 7
>KOG3704 consensus Heparan sulfate D-glucosaminyl 3-O-sulfotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00017 Score=65.44 Aligned_cols=159 Identities=21% Similarity=0.254 Sum_probs=92.8
Q ss_pred CCCCeEEEEeeCCCceeEEeehhhhccCCCCCCCHHHHHHHhccC---c-------cccCchHHHHHHHHHHhhcCCCeE
Q 048598 150 NSGCRIVYVCRNPLDQFISEWLFIARTQDKEPSDLAEAFERACNG---I-------QIFGPIWEHALGYWRASIEQPDKI 219 (335)
Q Consensus 150 ~~~~KiI~ivRdPrDv~vS~y~~~~~~~~~~~~~~~~~~~~f~~g---~-------~~~g~~~~hv~~~w~~~~~~~~~v 219 (335)
++..|.|.|+|||--.++|-|-....+ .+.-.+|+.+ .|.++ . +..|-|..|+..|...- .-.++
T Consensus 188 ~pd~KLivvvR~PvtRaiSDyTQt~sk-~~~~P~fe~l--afkn~~~g~id~~w~ai~iglY~~Hle~WL~yF--pL~q~ 262 (360)
T KOG3704|consen 188 NPDTKLIVVVRDPVTRAISDYTQTLSK-KPDIPTFEVL--AFKNRTAGLIDTSWKAIRIGLYAVHLENWLRYF--PLRQI 262 (360)
T ss_pred CCCceEEEEEcCchhhhHHHHHHHHhc-CCCCCceeee--eeecCccceeecchhhhhhhHHHHHHHHHHHhC--chhhe
Confidence 578999999999999999998643321 1112223321 12211 1 23456788998887752 22589
Q ss_pred EEEechhhhhcHHHHHHHHHHHhCCCCChHhhhhHHHHHHHHhcChHHHHhhhhhccCCcccCCCCCCCceecCccCCCc
Q 048598 220 FFLKYEDLKEDIASCINRLADFLGCPLSEEEVTQGVVEEISKLCSFDYIQNLEVTKTGRAYANGVKNSHYLRKGEVGDWK 299 (335)
Q Consensus 220 l~v~YEDL~~d~~~~v~rI~~FLG~~~~~~~~~~~~l~~iv~~~Sf~~mk~~~~~~~~~~~~~~~~~~~f~RkG~vGdWk 299 (335)
|||.=|-|+.||.+++.|+-+|||+.-.-.+ .+--|++-|.-.--+ ...+-......-| .-|.=-
T Consensus 263 lfVsGerli~dPa~E~~rVqdFLgLkr~it~----------khfyFnktKGFpClk----K~e~ss~prCLgk-sKgr~h 327 (360)
T KOG3704|consen 263 LFVSGERLISDPAGELGRVQDFLGLKRVITD----------KHFYFNKTKGFPCLK----KAEDSSRPRCLGK-SKGRTH 327 (360)
T ss_pred EEecCceeecCcHHHHHHHHHHhcccceecc----------ceeEEecCCCceeee----ccccCCCcccccc-ccCCCC
Confidence 9999999999999999999999998632111 112222222100000 0000000011111 123344
Q ss_pred cCCcHHHHHHHHHHHHHH----cCCCCceeecC
Q 048598 300 NYLTPSMSERLEKIIEEK----LAGSGLTFKTS 328 (335)
Q Consensus 300 ~~ft~eq~~~~~~~~~e~----l~~~gl~f~~~ 328 (335)
.+..++.++++.+.+.+- .+-+|..|.|+
T Consensus 328 p~idp~~i~rLrefyrpfN~kFyq~tG~dF~W~ 360 (360)
T KOG3704|consen 328 PHIDPEVIRRLREFYRPFNLKFYQMTGQDFGWE 360 (360)
T ss_pred CCCCHHHHHHHHHHhcchhhhHHHhhccccCCC
Confidence 688999999999888753 23356666663
No 8
>KOG3703 consensus Heparan sulfate N-deacetylase/N-sulfotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.0092 Score=59.33 Aligned_cols=93 Identities=20% Similarity=0.255 Sum_probs=64.8
Q ss_pred CCCeEEEEeeCCCceeEEeehhhhccCCC-----------CCCCH-HHHHHHhccCccccCchHHHHHHHHHHhhcCCCe
Q 048598 151 SGCRIVYVCRNPLDQFISEWLFIARTQDK-----------EPSDL-AEAFERACNGIQIFGPIWEHALGYWRASIEQPDK 218 (335)
Q Consensus 151 ~~~KiI~ivRdPrDv~vS~y~~~~~~~~~-----------~~~~~-~~~~~~f~~g~~~~g~~~~hv~~~w~~~~~~~~~ 218 (335)
|.+|||-|.-||-|.+.|+|.|.+.+..+ ..++. ...+...-+--+.-|-|..|+..|...- ...+
T Consensus 686 P~AKIvtILinPadRAYSWyQHqraH~DpvAl~~~fyeVIsas~~aps~lk~lq~RClvpG~Ya~HlerWL~y~--~~~Q 763 (873)
T KOG3703|consen 686 PHAKIVTILINPADRAYSWYQHQRAHEDPVALNYSFYEVISASSSAPSALKALQNRCLVPGWYATHLERWLTYF--PAQQ 763 (873)
T ss_pred CcceEEEEEeChHHhhhHHHHHHhhcCCcceecceeEEEEecCCCCcHHHHHHHHhccCcchHHHHHHHHHHhC--Cccc
Confidence 78999999999999999999988762110 00110 1111111111123344567888877653 3458
Q ss_pred EEEEechhhhhcHHHHHHHHHHHhCCC
Q 048598 219 IFFLKYEDLKEDIASCINRLADFLGCP 245 (335)
Q Consensus 219 vl~v~YEDL~~d~~~~v~rI~~FLG~~ 245 (335)
+++|-=++|+.||..++..|-.|||+.
T Consensus 764 lliiDg~qLr~~Pa~vm~~~qkfLgv~ 790 (873)
T KOG3703|consen 764 LLIIDGQQLRTNPATVMNELQKFLGVT 790 (873)
T ss_pred EEEEccHHhccCcHHHHHHHHHHhCCC
Confidence 999999999999999999999999994
No 9
>KOG3922 consensus Sulfotransferases [Posttranslational modification, protein turnover, chaperones]
Probab=92.07 E-value=0.065 Score=49.72 Aligned_cols=102 Identities=18% Similarity=0.294 Sum_probs=58.7
Q ss_pred CCEEEEcCCCccchHHHHHHHHHhccCCcccCCCCCcCCCccccccchhcccccCCCCCCcc--cCCCCceEEeccCCCC
Q 048598 66 SDVILATYPKSGTTWLKALTFTIMNRSRFELQNSPLHTTTLHQLVPFLEFDLYLNHQSPNFE--CFSAPRIFATHVPHAL 143 (335)
Q Consensus 66 ~DV~i~syPKSGTTWl~~il~~i~~~~~~~~~~~~l~~~~~~~~~p~lE~~~~~~~~~~~~~--~~~~pR~ikTHlp~~~ 143 (335)
.-|+-.--||||+|=...|+.-+.....+... ..+.+..-+-+-...- ..-...+. ..+.|-++.-|..|--
T Consensus 79 ~vViyNRVpKtGStTf~niaydL~ekn~F~vl-----h~nvtkn~~vlsl~dQ-~qfvknIssw~e~~P~~yhgHV~Fld 152 (361)
T KOG3922|consen 79 EVVIYNRVPKTGSTTFVNIAYDLSEKNGFHVL-----HINVTKNETVLSLPDQ-QQFVKNISSWTEMKPALYHGHVAFLD 152 (361)
T ss_pred eEEEEecCCCccchhHHHHHHHHHhccCceEE-----EeeccccceeeccHHH-HHHHHhhccccccCcceeeeeeeeee
Confidence 34666778999998888898888765554321 0111100010100000 00001111 2356889999987633
Q ss_pred CC-ccccCCCCeEEEEeeCCCceeEEeehhhhc
Q 048598 144 LP-GSILNSGCRIVYVCRNPLDQFISEWLFIAR 175 (335)
Q Consensus 144 lp-~~l~~~~~KiI~ivRdPrDv~vS~y~~~~~ 175 (335)
+. .++ ++.=+|-|+|||.+.++|+|+|.+-
T Consensus 153 FskFgi--~~PIYINvIRdPveRllS~yyflRf 183 (361)
T KOG3922|consen 153 FSKFGI--ARPIYINVIRDPVERLLSYYYFLRF 183 (361)
T ss_pred hhhhCC--CCceEEeeeccHHHHHHhHhhhhcc
Confidence 22 222 3456788999999999999998875
No 10
>PF03567 Sulfotransfer_2: Sulfotransferase family; InterPro: IPR005331 This entry consists of a number of carbohydrate sulphotransferases that transfer sulphate to carbohydrate groups in glycoproteins and glycolipids. These include: Carbohydrate sulphotransferases 8 and 9, which transfer sulphate to position 4 of non-reducing N-acetylgalactosamine (GalNAc) residues in both N-glycans and O-glycans []. They function in the biosynthesis of glycoprotein hormones lutropin and thyrotropin, by mediating sulphation of their carbohydrate structures. Carbohydrate sulphotransferase 10, which transfers sulphate to position 3 of the terminal glucuronic acid in both protein- and lipid-linked oligosaccharides []. It directs the biosynthesis of the HNK-1 carbohydrate structure, a sulphated glucuronyl-lactosaminyl residue carried by many neural recognition molecules, which is involved in cell interactions during ontogenetic development and in synaptic plasticity in the adult. Carbohydrate sulphotransferases 11 - 13, which catalyze the transfer of sulphate to position 4 of the GalNAc residue of chondroitin []. Chondroitin sulphate constitutes the predominant proteoglycan present in cartilage and is distributed on the surfaces of many cells and extracellular matrices. Some, thought not all, of these enzymes also transfer sulphate to dermatan. Carbohydrate sulphotransferase D4ST1, which transfers sulphate to position 4 of the GalNAc residue of dermatan sulphate []. Heparan sulphate 2-O-sulphotransferase (HS2ST). Heparan sulphate (HS) is a co-receptor for a number of growth factors, morphogens, and adhesion proteins. HS biosynthetic modifications may determine the strength and outcome of HS-ligand interactions. Mice that lack HS2ST undergo developmental failure only after midgestation,the most dramatic effect being the complete failure of kidney development []. Heparan-sulphate 6-O-sulphotransferase (HS6ST), which catalyses the transfer of sulphate from adenosine 3'-phosphate, 5'-phosphosulphate to the 6th position of the N -sulphoglucosamine residue in heparan sulphate []. Chondroitin 6-sulphotransferase catalyses the transfer of sulphate to position 6 of the N-acetylgalactosamine residue of chondroitin []. ; GO: 0008146 sulfotransferase activity, 0016021 integral to membrane; PDB: 3F5F_A.
Probab=91.70 E-value=0.056 Score=48.32 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=17.7
Q ss_pred CCeEEEEeeCCCceeEEeehhhhc
Q 048598 152 GCRIVYVCRNPLDQFISEWLFIAR 175 (335)
Q Consensus 152 ~~KiI~ivRdPrDv~vS~y~~~~~ 175 (335)
....|-++|||.|.+||.|++...
T Consensus 78 ~~~~~t~vRdP~~R~vS~y~~~~~ 101 (253)
T PF03567_consen 78 SYFKFTFVRDPVDRLVSAYYDKIR 101 (253)
T ss_dssp --EEEEEE--HHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCHHHHHHHHHHHHHh
Confidence 478899999999999999987653
No 11
>PF06990 Gal-3-0_sulfotr: Galactose-3-O-sulfotransferase ; InterPro: IPR009729 This family consists of several mammalian galactose-3-O-sulphotransferase proteins. Gal-3-O-sulphotransferase is thought to play a critical role in 3'-sulphation of N-acetyllactosamine in both O- and N-glycans [].; GO: 0001733 galactosylceramide sulfotransferase activity, 0009058 biosynthetic process, 0005794 Golgi apparatus, 0016021 integral to membrane
Probab=90.47 E-value=0.47 Score=46.60 Aligned_cols=108 Identities=15% Similarity=0.184 Sum_probs=58.9
Q ss_pred cccCCCCEEEEcCCCccchHHHHHHHHHhccCCcccCCCCCcCCCccccccchhcccccCCCCCCcccCCCCceEEeccC
Q 048598 61 FQAQESDVILATYPKSGTTWLKALTFTIMNRSRFELQNSPLHTTTLHQLVPFLEFDLYLNHQSPNFECFSAPRIFATHVP 140 (335)
Q Consensus 61 f~~r~~DV~i~syPKSGTTWl~~il~~i~~~~~~~~~~~~l~~~~~~~~~p~lE~~~~~~~~~~~~~~~~~pR~ikTHlp 140 (335)
=+++.+=|||=| .|||+|=++.|+...-...+.... .|... ...-.-|..-... -..........-++..|+.
T Consensus 63 C~P~~nIvFlKT-HKTgSSTv~nIL~Rfg~~~nL~~a-lP~~~-~~~~~~P~~f~~~----~v~~~~~~~~~nIl~~H~r 135 (402)
T PF06990_consen 63 CQPKTNIVFLKT-HKTGSSTVQNILFRFGEKHNLTFA-LPRGG-RNQFGYPAPFNAR----FVEGYPPGGRFNILCHHMR 135 (402)
T ss_pred ccccceEEEEec-CCcccHHHHHHHHHHHHHcCCEEe-cCCCC-CCCCCCCCcCCcc----ccccCCCCCCceEEeehhc
Confidence 345445455555 599999999999876433222111 01000 0000111100000 0111112234578889998
Q ss_pred CCCC-CccccCCCCeEEEEeeCCCceeEEeehhhhc
Q 048598 141 HALL-PGSILNSGCRIVYVCRNPLDQFISEWLFIAR 175 (335)
Q Consensus 141 ~~~l-p~~l~~~~~KiI~ivRdPrDv~vS~y~~~~~ 175 (335)
|+.- -..+..+++++|-|+|||...+.|.|+|++.
T Consensus 136 fn~~~~~~lmP~dt~yiTILRdP~~~feS~f~Yy~~ 171 (402)
T PF06990_consen 136 FNRPEVRKLMPPDTKYITILRDPVSHFESSFNYYKR 171 (402)
T ss_pred cCHHHHHHhCCCCCeEEEEEcCHHHHHHhHHHHhhc
Confidence 8631 1122235789999999999999999998875
No 12
>KOG4157 consensus beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=77.13 E-value=1.5 Score=43.01 Aligned_cols=203 Identities=19% Similarity=0.253 Sum_probs=102.6
Q ss_pred hccccCCCCEEEEcCCCccchHHHHHHHHHhcc--CCcccCCCCCcCCCccccccchhcccccCCCCCCcccCCCCceEE
Q 048598 59 KHFQAQESDVILATYPKSGTTWLKALTFTIMNR--SRFELQNSPLHTTTLHQLVPFLEFDLYLNHQSPNFECFSAPRIFA 136 (335)
Q Consensus 59 ~~f~~r~~DV~i~syPKSGTTWl~~il~~i~~~--~~~~~~~~~l~~~~~~~~~p~lE~~~~~~~~~~~~~~~~~pR~ik 136 (335)
..+-+-...+-+.|+|+.|+||++.++..+..- +..-.. ..+ .....+ .| ........-+.++
T Consensus 198 ~~~~p~ss~~~~st~~~~~~t~~~~~~~tat~~~t~s~y~~-g~~----~~~~~~-~~---------~n~~~~~~~~~~~ 262 (418)
T KOG4157|consen 198 RSSLPSSTAVPLSSFPGLGNTWARYLIQQATGFLTGSIYKD-GGL----LKTGFP-GE---------RNHVCNSNVSLVK 262 (418)
T ss_pred cccCCCCCcccceeeeecccceeeeeeeceeeEeeeeEEec-ccc----cccccc-cc---------ccccccceeeeee
Confidence 345555566889999999999999888876532 100000 000 000000 00 0000111234567
Q ss_pred eccCCCCCCccccCCCCeEEEEeeCCCceeEEeehhhhc-cC-CCCCCCHH-HHHHHhccCccccCchHHHHHHHHHHhh
Q 048598 137 THVPHALLPGSILNSGCRIVYVCRNPLDQFISEWLFIAR-TQ-DKEPSDLA-EAFERACNGIQIFGPIWEHALGYWRASI 213 (335)
Q Consensus 137 THlp~~~lp~~l~~~~~KiI~ivRdPrDv~vS~y~~~~~-~~-~~~~~~~~-~~~~~f~~g~~~~g~~~~hv~~~w~~~~ 213 (335)
+|......- ..-...|.++|+|.=.++..+..... .. ......+. ..+..+..+. .-.|-.|... |..
T Consensus 263 ~~~~~~~v~----~~~~~~i~ll~~~~~~~~~~~~r~~~~~~~~~~~~~y~~~~~~~~~~~~--~~~~ss~~~~-w~~-- 333 (418)
T KOG4157|consen 263 TGEWGSVVG----AVFSAAILLLRDPEKAYIAEFNRKSGGHIGFASPKSYKSKKWPQFVSNK--LSGWSSHTLS-WAR-- 333 (418)
T ss_pred cceecceee----ecchhheeeeccccccccccccccccccccccccchhccccccccccCC--CCCccccchh-hhc--
Confidence 776654211 12345677788887544444332211 00 00010111 0111111111 1122356666 443
Q ss_pred cCCCeEEEEechhhhhcHHHHHHHHHHHhCCCCChHhhhhHHHHHHHHhcChHHHHhhhhhccCCcccCCCCCCCceecC
Q 048598 214 EQPDKIFFLKYEDLKEDIASCINRLADFLGCPLSEEEVTQGVVEEISKLCSFDYIQNLEVTKTGRAYANGVKNSHYLRKG 293 (335)
Q Consensus 214 ~~~~~vl~v~YEDL~~d~~~~v~rI~~FLG~~~~~~~~~~~~l~~iv~~~Sf~~mk~~~~~~~~~~~~~~~~~~~f~RkG 293 (335)
...+++.+.||+|..++...+..+..|+|.+..+.. .+.. .. .+...++|.|
T Consensus 334 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~-------------~~----------~~e~~~~~~~ 385 (418)
T KOG4157|consen 334 -KGTGSLVVFYDDLVHPTVAPLRLIVDFLQHPVPESL----MLCD-------------IM----------QKEGIFGRRG 385 (418)
T ss_pred -ccccceeEEeecccccccccccccccccCccccccc----cCCc-------------cc----------cccCcccccC
Confidence 133669999999999999999999999997776542 0000 00 1223455556
Q ss_pred ccCCCccCCcHHHHHHHHHH
Q 048598 294 EVGDWKNYLTPSMSERLEKI 313 (335)
Q Consensus 294 ~vGdWk~~ft~eq~~~~~~~ 313 (335)
....=.+-++..+.+.++-.
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~ 405 (418)
T KOG4157|consen 386 KRLLSPDPLTDSMLDEVKGL 405 (418)
T ss_pred CccCCCCcchhhhhhhhhcc
Confidence 55555677777777766543
No 13
>COG4424 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.65 E-value=5.5 Score=35.26 Aligned_cols=51 Identities=14% Similarity=0.203 Sum_probs=37.3
Q ss_pred eEEEEechhhhhcHHHHHHHHHHHhCCCCChHhhhhHHHHHHHHhcChHHHHh
Q 048598 218 KIFFLKYEDLKEDIASCINRLADFLGCPLSEEEVTQGVVEEISKLCSFDYIQN 270 (335)
Q Consensus 218 ~vl~v~YEDL~~d~~~~v~rI~~FLG~~~~~~~~~~~~l~~iv~~~Sf~~mk~ 270 (335)
.-+-|-||.|-+||.+.+..+|+.||++..... .-.+++..+..|-+-|..
T Consensus 188 ep~riaYe~Lsadp~aava~~~ealgv~~p~a~--~p~~a~qad~~s~eWv~R 238 (250)
T COG4424 188 EPIRIAYEVLSADPTAAVASVLEALGVDPPLAP--APMLARQADQRSDEWVDR 238 (250)
T ss_pred cHHHHhHHHHccCcHHHHHHHHHHhCCCCCCCc--CchHHHhhhhhhHHHHHH
Confidence 345577999999999999999999999865431 112556666666666655
No 14
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=50.80 E-value=15 Score=29.60 Aligned_cols=21 Identities=38% Similarity=0.498 Sum_probs=17.8
Q ss_pred EEEEcCCCcc-chHHHHHHHHH
Q 048598 68 VILATYPKSG-TTWLKALTFTI 88 (335)
Q Consensus 68 V~i~syPKSG-TTWl~~il~~i 88 (335)
|++++.|-|| |||.+++...+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 7899999999 99998877553
No 15
>COG4424 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.17 E-value=22 Score=31.57 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=21.5
Q ss_pred CCEEEEcCCCccchHHHHHHHHHhccCC
Q 048598 66 SDVILATYPKSGTTWLKALTFTIMNRSR 93 (335)
Q Consensus 66 ~DV~i~syPKSGTTWl~~il~~i~~~~~ 93 (335)
+--+|++-||||+||+-.+|..--..|+
T Consensus 6 r~Ylilt~pRSGStlLckllaatG~sG~ 33 (250)
T COG4424 6 RPYLILTTPRSGSTLLCKLLAATGCSGE 33 (250)
T ss_pred cceeEecCCCCcchHHHHHHHhcCCCCC
Confidence 3468999999999999888876544443
No 16
>KOG4651 consensus Chondroitin 6-sulfotransferase and related sulfotransferases [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=46.07 E-value=5.3 Score=38.10 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=25.4
Q ss_pred CCCEEEEcCCCccchHHHHHHHHHhccCCc
Q 048598 65 ESDVILATYPKSGTTWLKALTFTIMNRSRF 94 (335)
Q Consensus 65 ~~DV~i~syPKSGTTWl~~il~~i~~~~~~ 94 (335)
+..+..|.-|||++|-...|...|.+.+.+
T Consensus 81 k~kl~~C~I~Ksms~l~~nimc~L~n~~~y 110 (324)
T KOG4651|consen 81 KYKLIYCEIPKSMSTLWTNIMCLLYNETQY 110 (324)
T ss_pred CCceEEEeecccHhhhhhhhheeEeChhhh
Confidence 458899999999999999999888776654
No 17
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=44.13 E-value=25 Score=29.03 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=20.2
Q ss_pred EEEEcCCCcc-chHHHHHHHHHhccC
Q 048598 68 VILATYPKSG-TTWLKALTFTIMNRS 92 (335)
Q Consensus 68 V~i~syPKSG-TTWl~~il~~i~~~~ 92 (335)
|.|+++..|| ||.++.|+..+..++
T Consensus 3 v~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 3 VQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 6799999999 777788888777655
No 18
>COG1158 Rho Transcription termination factor [Transcription]
Probab=42.75 E-value=22 Score=34.11 Aligned_cols=27 Identities=26% Similarity=0.397 Sum_probs=22.0
Q ss_pred CCCEEEEcCCCcc-chHHHHHHHHHhcc
Q 048598 65 ESDVILATYPKSG-TTWLKALTFTIMNR 91 (335)
Q Consensus 65 ~~DV~i~syPKSG-TTWl~~il~~i~~~ 91 (335)
..--+||+-||+| ||.||.|..+|..+
T Consensus 173 GQR~LIVAPPkaGKT~lLq~IA~aIt~N 200 (422)
T COG1158 173 GQRGLIVAPPKAGKTTLLQNIANAITTN 200 (422)
T ss_pred CceeeEecCCCCCchHHHHHHHHHHhcC
Confidence 3456899999999 78889998888754
No 19
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=40.60 E-value=49 Score=30.11 Aligned_cols=53 Identities=23% Similarity=0.300 Sum_probs=39.5
Q ss_pred CccccCchHHHHHHHHHHhhcCCCeEEEEechhhh-----hcHHHHHHHHHHHhCCCCCh
Q 048598 194 GIQIFGPIWEHALGYWRASIEQPDKIFFLKYEDLK-----EDIASCINRLADFLGCPLSE 248 (335)
Q Consensus 194 g~~~~g~~~~hv~~~w~~~~~~~~~vl~v~YEDL~-----~d~~~~v~rI~~FLG~~~~~ 248 (335)
|....|.+..-+..|..++.. ...+++|.||.- .+-...+.+.+++||+.++.
T Consensus 12 G~LHlG~~~~al~n~l~ar~~--~G~~ilRieDtd~~r~~~~~~~~i~~dL~wlGl~~d~ 69 (239)
T cd00808 12 GFLHIGGARTALFNYLFARKH--GGKFILRIEDTDQERSVPEAEEAILEALKWLGLDWDE 69 (239)
T ss_pred CcccHHHHHHHHHHHHHHHHc--CCeEEEEECcCCCCCCchHHHHHHHHHHHHcCCCCCc
Confidence 556677788888898887532 358899999973 23346777788899999886
No 20
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=36.73 E-value=34 Score=30.77 Aligned_cols=25 Identities=40% Similarity=0.612 Sum_probs=20.0
Q ss_pred EEEEcCCCcc-chHHHHHHHHHhccC
Q 048598 68 VILATYPKSG-TTWLKALTFTIMNRS 92 (335)
Q Consensus 68 V~i~syPKSG-TTWl~~il~~i~~~~ 92 (335)
|++.+||-|| ||..++++..+-...
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhh
Confidence 6889999999 788888887765443
No 21
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=36.22 E-value=33 Score=33.15 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=22.7
Q ss_pred CCCEEEEcCCCcc-chHHHHHHHHHhccC
Q 048598 65 ESDVILATYPKSG-TTWLKALTFTIMNRS 92 (335)
Q Consensus 65 ~~DV~i~syPKSG-TTWl~~il~~i~~~~ 92 (335)
.-=|.|+++|.|| ||++..++..+..+|
T Consensus 205 ~~~~~~~g~~~~GKtt~~~~l~~~l~~~g 233 (366)
T PRK14489 205 PPLLGVVGYSGTGKTTLLEKLIPELIARG 233 (366)
T ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHHcC
Confidence 4468899999999 778899998887654
No 22
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=34.96 E-value=41 Score=26.14 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=14.5
Q ss_pred EEEEcCCCccchHHHHHHHHH
Q 048598 68 VILATYPKSGTTWLKALTFTI 88 (335)
Q Consensus 68 V~i~syPKSGTTWl~~il~~i 88 (335)
|+|++.|-||-|-+-..|...
T Consensus 2 I~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999955444444443
No 23
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=32.54 E-value=41 Score=28.47 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=18.7
Q ss_pred CEEEEcCCCcc-chHHHHHHHHH
Q 048598 67 DVILATYPKSG-TTWLKALTFTI 88 (335)
Q Consensus 67 DV~i~syPKSG-TTWl~~il~~i 88 (335)
-|++++.|-|| |||.+.+...+
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 47899999999 88998887664
No 24
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=31.45 E-value=42 Score=31.07 Aligned_cols=23 Identities=39% Similarity=0.437 Sum_probs=16.1
Q ss_pred EEEEcCCCcc-chHHHHHHHHHhc
Q 048598 68 VILATYPKSG-TTWLKALTFTIMN 90 (335)
Q Consensus 68 V~i~syPKSG-TTWl~~il~~i~~ 90 (335)
|+|+++|-|| ||..++|...+-.
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHh
Confidence 7899999999 7777777776543
No 25
>PF01498 HTH_Tnp_Tc3_2: Transposase; InterPro: IPR002492 Transposase proteins are necessary for efficient DNA transposition. This family includes the amino-terminal region of Tc1, Tc1A, Tc1B and Tc2B transposases of Caenorhabditis elegans. The region encompasses the specific DNA binding and second DNA recognition domains as well as an amino-terminal region of the catalytic domain of Tc3 as described in []. Tc3 is a member of the Tc1/mariner family of transposable elements. This entry also includes histone-lysine N-methyltransferase SETMAR, which is a SET domain and mariner transposase fusion gene-containing protein. This histone methyltransferase has sequence-specific DNA-binding activity and recognises the 19-mer core of the 5'-terminal inverted repeats (TIRs) of the Hsmar1 element. This protein has DNA nicking activity, and has in vivo end joining activity and may mediate genomic integration of foreign DNA [, , , ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated, 0015074 DNA integration; PDB: 3K9K_B 3F2K_B 3K9J_B 1U78_A.
Probab=31.28 E-value=85 Score=22.25 Aligned_cols=62 Identities=19% Similarity=0.289 Sum_probs=30.1
Q ss_pred hhhhcHHHHHHHHHHHh---CCCCChHhhhhHHHHHHHHhcChHHHHhhhhhccCCcccCCCCCCCceecCccCCCccCC
Q 048598 226 DLKEDIASCINRLADFL---GCPLSEEEVTQGVVEEISKLCSFDYIQNLEVTKTGRAYANGVKNSHYLRKGEVGDWKNYL 302 (335)
Q Consensus 226 DL~~d~~~~v~rI~~FL---G~~~~~~~~~~~~l~~iv~~~Sf~~mk~~~~~~~~~~~~~~~~~~~f~RkG~vGdWk~~f 302 (335)
...+||..+...|..-| |.+++... |.+++... | + ++....|+-.|
T Consensus 7 ~v~~~p~~s~~~i~~~l~~~~~~vS~~T-----I~r~L~~~-------------g------------~-~~~~~~~kP~L 55 (72)
T PF01498_consen 7 MVRRNPRISAREIAQELQEAGISVSKST-----IRRRLREA-------------G------------L-KKRKARKKPFL 55 (72)
T ss_dssp ---------HHHHHHHT---T--S-HHH-----HHHHHHHT--------------------------E-EEETTEEEES-
T ss_pred HHHHCCCCCHHHHHHHHHHccCCcCHHH-----HHHHHHHc-------------C------------c-cccccccCCCC
Confidence 45678899999999999 99998876 66665322 1 1 23566778889
Q ss_pred cHHHHHHHHHHHHHHc
Q 048598 303 TPSMSERLEKIIEEKL 318 (335)
Q Consensus 303 t~eq~~~~~~~~~e~l 318 (335)
|+.+...=-+++.+.+
T Consensus 56 s~~~~~~Rl~fA~~h~ 71 (72)
T PF01498_consen 56 SPKHKKKRLEFAKEHL 71 (72)
T ss_dssp -HHHHHHHHHHH----
T ss_pred CHHHHHHHHHHhhhcc
Confidence 9988776555555543
No 26
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=30.37 E-value=58 Score=21.07 Aligned_cols=36 Identities=25% Similarity=0.169 Sum_probs=23.2
Q ss_pred hhhhcHHHHHHHHHHHhCCCCChHhhhhHHHHHHHH
Q 048598 226 DLKEDIASCINRLADFLGCPLSEEEVTQGVVEEISK 261 (335)
Q Consensus 226 DL~~d~~~~v~rI~~FLG~~~~~~~~~~~~l~~iv~ 261 (335)
||.+-+...++.||.-+|++-.........+.+|++
T Consensus 1 eL~~~~~~eL~~iAk~lgI~~~~~~~K~eLI~~Il~ 36 (43)
T PF07498_consen 1 ELKSMTLSELREIAKELGIEGYSKMRKQELIFAILK 36 (43)
T ss_dssp HHHCS-HHHHHHHHHCTT-TTGCCS-HHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHcCCCCCCcCCHHHHHHHHHH
Confidence 567778899999999999975433333345666654
No 27
>PRK04040 adenylate kinase; Provisional
Probab=30.25 E-value=47 Score=28.81 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=17.5
Q ss_pred EEEEcCCCcc-chHHHHHHHHH
Q 048598 68 VILATYPKSG-TTWLKALTFTI 88 (335)
Q Consensus 68 V~i~syPKSG-TTWl~~il~~i 88 (335)
|+|++.|.|| ||+++.+...+
T Consensus 5 i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 5 VVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred EEEEeCCCCCHHHHHHHHHHHh
Confidence 7889999999 77888777765
No 28
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=30.18 E-value=48 Score=29.00 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=20.4
Q ss_pred CCCEEEEcCCCcc-chHHHHHHHHHh
Q 048598 65 ESDVILATYPKSG-TTWLKALTFTIM 89 (335)
Q Consensus 65 ~~DV~i~syPKSG-TTWl~~il~~i~ 89 (335)
.--|.+++|+-|| ||++..++..+.
T Consensus 22 ~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 22 LVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3356799999999 899999988754
No 29
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=30.15 E-value=53 Score=28.31 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=19.7
Q ss_pred CEEEEcCCCcc-chHHHHHHHHHhcc
Q 048598 67 DVILATYPKSG-TTWLKALTFTIMNR 91 (335)
Q Consensus 67 DV~i~syPKSG-TTWl~~il~~i~~~ 91 (335)
=+-|++++.|| ||.++.|+..+..+
T Consensus 8 ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred EEEEECCCCChHHHHHHHHHHHHhhc
Confidence 46799999999 77778888877543
No 30
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=30.04 E-value=47 Score=29.95 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=18.9
Q ss_pred EEEEcCCCcc-chHHHHHHHHHh
Q 048598 68 VILATYPKSG-TTWLKALTFTIM 89 (335)
Q Consensus 68 V~i~syPKSG-TTWl~~il~~i~ 89 (335)
|+++++|-|| ||+.+.+...+-
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 7899999999 889988887664
No 31
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=27.47 E-value=1.8e+02 Score=20.09 Aligned_cols=28 Identities=25% Similarity=0.170 Sum_probs=21.5
Q ss_pred CeEEEEechhhhhcHHHHHHHHHHHhCC
Q 048598 217 DKIFFLKYEDLKEDIASCINRLADFLGC 244 (335)
Q Consensus 217 ~~vl~v~YEDL~~d~~~~v~rI~~FLG~ 244 (335)
..++.|-+||...++...+++-++||-.
T Consensus 15 dG~~siE~ED~~~~~~~G~~~a~~~lr~ 42 (55)
T PF07582_consen 15 DGWLSIEHEDALMDPEEGAREAAAFLRK 42 (55)
T ss_dssp -SEEEE---STTTSHHHHHHHHHHHHHT
T ss_pred CceEEEEeecCCCCHHHHHHHHHHHHHH
Confidence 3689999999999999999999998854
No 32
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=25.59 E-value=74 Score=26.64 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=18.8
Q ss_pred EEEEcCCCcc-chHHHHHHHHHhccC
Q 048598 68 VILATYPKSG-TTWLKALTFTIMNRS 92 (335)
Q Consensus 68 V~i~syPKSG-TTWl~~il~~i~~~~ 92 (335)
|.|++++.|| ||.+..++..+..+|
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G 27 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARG 27 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 5789999999 566677777776544
No 33
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=25.42 E-value=70 Score=29.69 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.0
Q ss_pred EEEEcCCCcc-chHHHHHHHHHhccC
Q 048598 68 VILATYPKSG-TTWLKALTFTIMNRS 92 (335)
Q Consensus 68 V~i~syPKSG-TTWl~~il~~i~~~~ 92 (335)
|-|++++.|| ||.+..++..+..+|
T Consensus 4 i~i~G~~gSGKTTLi~~Li~~L~~~G 29 (274)
T PRK14493 4 LSIVGYKATGKTTLVERLVDRLSGRG 29 (274)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 6699999999 899999999988776
No 34
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=25.25 E-value=67 Score=24.64 Aligned_cols=20 Identities=15% Similarity=0.222 Sum_probs=15.4
Q ss_pred EEEEcCCCcc-chHHHHHHHH
Q 048598 68 VILATYPKSG-TTWLKALTFT 87 (335)
Q Consensus 68 V~i~syPKSG-TTWl~~il~~ 87 (335)
|+|++-++|| ||.++.++..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 7999999999 6666665543
No 35
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=24.64 E-value=94 Score=29.25 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=29.1
Q ss_pred hccccCCCCEEEEcCCCcc-chHHHHHHHHHhccCC
Q 048598 59 KHFQAQESDVILATYPKSG-TTWLKALTFTIMNRSR 93 (335)
Q Consensus 59 ~~f~~r~~DV~i~syPKSG-TTWl~~il~~i~~~~~ 93 (335)
..+.-++--|+|+++..|| ||++|.+.+.+.....
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ 48 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKT 48 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccC
Confidence 4566778889999999999 8999999998876544
No 36
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=23.86 E-value=70 Score=27.24 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.1
Q ss_pred EEEcCCCcc-chHHHHHHHHHhccC
Q 048598 69 ILATYPKSG-TTWLKALTFTIMNRS 92 (335)
Q Consensus 69 ~i~syPKSG-TTWl~~il~~i~~~~ 92 (335)
=|++|-.|| ||.+..|+..+..+|
T Consensus 6 ~ivG~k~SGKTTLie~lv~~L~~~G 30 (161)
T COG1763 6 GIVGYKNSGKTTLIEKLVRKLKARG 30 (161)
T ss_pred EEEecCCCChhhHHHHHHHHHHhCC
Confidence 389999999 999999999988766
No 37
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=23.51 E-value=85 Score=24.25 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=17.5
Q ss_pred EEEEcCCCcc-chHHHHHHHHH
Q 048598 68 VILATYPKSG-TTWLKALTFTI 88 (335)
Q Consensus 68 V~i~syPKSG-TTWl~~il~~i 88 (335)
|+|.+.|-|| ||-.+++...+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999 77777777764
No 38
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=23.24 E-value=67 Score=27.35 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=17.0
Q ss_pred EEEEcCCCcc-chHHHHHHH
Q 048598 68 VILATYPKSG-TTWLKALTF 86 (335)
Q Consensus 68 V~i~syPKSG-TTWl~~il~ 86 (335)
++|.+|.-|| ||.+++++.
T Consensus 3 ~ii~GfLGsGKTTli~~ll~ 22 (178)
T PF02492_consen 3 IIITGFLGSGKTTLINHLLK 22 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 4689999999 999999997
No 39
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=23.03 E-value=1.6e+02 Score=26.86 Aligned_cols=53 Identities=17% Similarity=0.173 Sum_probs=37.7
Q ss_pred CccccCchHHHHHHHHHHhhcCCCeEEEEechhhhh-----cHHHHHHHHHHHhCCCCCh
Q 048598 194 GIQIFGPIWEHALGYWRASIEQPDKIFFLKYEDLKE-----DIASCINRLADFLGCPLSE 248 (335)
Q Consensus 194 g~~~~g~~~~hv~~~w~~~~~~~~~vl~v~YEDL~~-----d~~~~v~rI~~FLG~~~~~ 248 (335)
|....|.-..-+.+|..++.. .--+++|+||.-. .-...+.+-+++||+.+++
T Consensus 12 G~lHlG~~~~al~~~l~Ar~~--~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wD~ 69 (238)
T cd00807 12 GYLHIGHAKAILLNFGYAKKY--GGRCNLRFDDTNPEKEEEEYVDSIKEDVKWLGIKPYK 69 (238)
T ss_pred CcccHHHHHHHHHHHHHHHHh--CCEEEEEecCCCCcccchHHHHHHHHHHHHcCCCCCC
Confidence 444566666677888777532 3567899999864 3456678888899999883
No 40
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=22.40 E-value=85 Score=27.79 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=20.5
Q ss_pred CCC-CEEEEcCCCcc-chHHHHHHHHHhcc
Q 048598 64 QES-DVILATYPKSG-TTWLKALTFTIMNR 91 (335)
Q Consensus 64 r~~-DV~i~syPKSG-TTWl~~il~~i~~~ 91 (335)
+++ =+.|++.|.|| |+|+.+++..+...
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~ 40 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKK 40 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 344 55689999999 66677787776654
No 41
>TIGR03715 KxYKxGKxW KxYKxGKxW signal peptide. This model describes a novel form of signal peptide that occurs as an N-terminal domain with a recognizable motif, reminiscent of the YSIRK and PEP-CTERM forms of signal peptide. This domain tends to occur on long, low-complexity (usually Serine-rich and heavily glycosylated) proteins of the Firmicutes, and (as with YSIRK) the majority of these proteins have the LPXTG cell wall-anchoring motif at the C-terminus.
Probab=22.17 E-value=71 Score=18.76 Aligned_cols=15 Identities=40% Similarity=0.565 Sum_probs=11.9
Q ss_pred CCccchHHHHHHHHH
Q 048598 74 PKSGTTWLKALTFTI 88 (335)
Q Consensus 74 PKSGTTWl~~il~~i 88 (335)
-|||.+|+-.-+..+
T Consensus 7 yKsGK~Wv~a~~~~~ 21 (29)
T TIGR03715 7 YKSGKQWVFAAITTL 21 (29)
T ss_pred EecccHHHHHHHHHH
Confidence 489999998876654
No 42
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=20.90 E-value=1.1e+02 Score=21.52 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=15.8
Q ss_pred EEEEcCCCcc-chHHHHHHHHH
Q 048598 68 VILATYPKSG-TTWLKALTFTI 88 (335)
Q Consensus 68 V~i~syPKSG-TTWl~~il~~i 88 (335)
|+|++.|-|| ||+.+.+...+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999 56666665555
No 43
>PRK07261 topology modulation protein; Provisional
Probab=20.53 E-value=91 Score=26.42 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=14.9
Q ss_pred EEEEcCCCcc-chHHHHHHH
Q 048598 68 VILATYPKSG-TTWLKALTF 86 (335)
Q Consensus 68 V~i~syPKSG-TTWl~~il~ 86 (335)
|+|++.|-|| ||+.+.|..
T Consensus 3 i~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 7899999999 666666543
No 44
>cd01038 Endonuclease_DUF559 Domain of unknown function, appears to be related to a diverse group of endonucleases.
Probab=20.13 E-value=1.3e+02 Score=23.46 Aligned_cols=27 Identities=7% Similarity=0.159 Sum_probs=23.7
Q ss_pred CCeEEEEechhhhhcHHHHHHHHHHHh
Q 048598 216 PDKIFFLKYEDLKEDIASCINRLADFL 242 (335)
Q Consensus 216 ~~~vl~v~YEDL~~d~~~~v~rI~~FL 242 (335)
.-.|+-++++|+..+|..++.+|.+.|
T Consensus 81 Gw~vlR~~~~dv~~~~~~~~~~I~~~l 107 (108)
T cd01038 81 GFRVLRFWNNEVLRNIEAVLEAILAAL 107 (108)
T ss_pred CCEEEEEEHHHHhhCHHHHHHHHHHHh
Confidence 347899999999999999999998765
Done!