BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048599
(354 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 20/121 (16%)
Query: 106 IYLFPLIDNEPKDGVLSLNELDNWN-------VELAVDRLSYTTQKQIELS----DRDGD 154
++ P I++E D +L + D V +A+DR S ++ ++E + D+DG+
Sbjct: 382 VFDLPQIESEV-DAILGAADFDRNGYIDYSEFVTVAMDRKSLLSKDKLESAFQKFDQDGN 440
Query: 155 GEISFYEYLPQFSKQDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSN 214
G+IS E F G+ H ++ WKE D +++G ++F+EF + SN
Sbjct: 441 GKISVDELASVF--------GLDHLESKTWKEMISGIDSNNDGDVDFEEFCKMIQKLCSN 492
Query: 215 N 215
N
Sbjct: 493 N 493
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 15/141 (10%)
Query: 150 DRDGDGEISFYEYLPQFSKQDIEKNGM--VHGQAGWWKEQFDNADVDSNGTLNFDEFYNF 207
D++GDG++ E + +SK E+ + + AD D NG +++ EF
Sbjct: 356 DKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDYSEFVTV 415
Query: 208 LHPEDSNNTAIQRWLLREKLERMDDDNDGKLNLDEF--------LEN-TYRTYKSYAEFE 258
S + + L ++ D D +GK+++DE LE+ T++ S +
Sbjct: 416 AMDRKS---LLSKDKLESAFQKFDQDGNGKISVDELASVFGLDHLESKTWKEMISGIDSN 472
Query: 259 DDGDGTDFPSAEETFVELDTN 279
+DGD DF + +L +N
Sbjct: 473 NDGD-VDFEEFCKMIQKLCSN 492
>pdb|3L19|A Chain A, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
pdb|3L19|B Chain B, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
Length = 214
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 20/121 (16%)
Query: 106 IYLFPLIDNEPKDGVLSLNELDNWN-------VELAVDRLSYTTQKQIELS----DRDGD 154
++ P I++E D +L + D V +A+DR S ++ ++E + D+DG+
Sbjct: 99 VFDLPQIESEV-DAILGAADFDRNGYIDYSEFVTVAMDRKSLLSKDKLESAFQKFDQDGN 157
Query: 155 GEISFYEYLPQFSKQDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSN 214
G+IS E F G+ H ++ WKE D +++G ++F+EF + SN
Sbjct: 158 GKISVDELASVF--------GLDHLESKTWKEMISGIDSNNDGDVDFEEFCKMIQKLCSN 209
Query: 215 N 215
N
Sbjct: 210 N 210
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 150 DRDGDGEISFYEYLPQFSKQDIEKNGM-----VHGQAGWWKEQFDNADVDSNGTLNFDEF 204
D++GDG++ E + +SK E+ + + + AD D NG +++ EF
Sbjct: 73 DKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAI---LGAADFDRNGYIDYSEF 129
Query: 205 YNFLHPEDSNNTAIQRWLLREKLERMDDDNDGKLNLDEF 243
S + + L ++ D D +GK+++DE
Sbjct: 130 VTVAMDRKS---LLSKDKLESAFQKFDQDGNGKISVDEL 165
>pdb|5TNC|A Chain A, Refined Crystal Structure Of Troponin C From Turkey
Skeletal Muscle At 2.0 Angstroms Resolution
Length = 162
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 61/147 (41%), Gaps = 12/147 (8%)
Query: 184 WKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMDDDNDGKLNLDEF 243
+K FD D D G ++ E + N T + L +E +D+D G ++ +EF
Sbjct: 22 FKAAFDMFDADGGGDISTKELGTVMRMLGQNPT---KEELDAIIEEVDEDGSGTIDFEEF 78
Query: 244 LENTYRTYKSYAEFEDDGDGTDFPSAEETFVELDTNKDKLLEVEELKPIFSYLHPGEISY 303
L R K +D G E+ F D N D +++EEL I GE
Sbjct: 79 LVMMVRQMK------EDAKGKSEEELEDCFRIFDKNADGFIDIEELGEILRA--TGE-HV 129
Query: 304 AKYYSRHLIHEADDNRDGNLTLDEMLN 330
+ L+ ++D N DG + DE L
Sbjct: 130 TEEDIEDLMKDSDKNNDGRIDFDEFLK 156
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 13/103 (12%)
Query: 146 IELSDRDGDGEISFYEYLPQFSKQDIEKNGMVHGQAGWWKEQFDNA----DVDSNGTLNF 201
IE D DG G I F E+L +Q M G +E+ ++ D +++G ++
Sbjct: 62 IEEVDEDGSGTIDFEEFLVMMVRQ------MKEDAKGKSEEELEDCFRIFDKNADGFIDI 115
Query: 202 DEFYNFLHPEDSNNTAIQRWLLREKLERMDDDNDGKLNLDEFL 244
+E L + + + + ++ D +NDG+++ DEFL
Sbjct: 116 EELGEILR---ATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFL 155
>pdb|1A2X|A Chain A, Complex Of Troponin C With A 47 Residue (1-47) Fragment Of
Troponin I
Length = 159
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 57/147 (38%), Gaps = 12/147 (8%)
Query: 184 WKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMDDDNDGKLNLDEF 243
+K FD D D G ++ E + T + L +E +D+D G ++ +EF
Sbjct: 19 FKAAFDMFDADGGGDISVKELGTVMRMLGQTPT---KEELDAIIEEVDEDGSGTIDFEEF 75
Query: 244 LENTYRTYKSYAEFEDDGDGTDFPSAEETFVELDTNKDKLLEVEELKPIFSYLHPGEISY 303
L R K +D G E F D N D ++ EEL IF GE
Sbjct: 76 LVMMVRQMK------EDAKGKSEEELAECFRIFDRNADGYIDAEELAEIFR--ASGE-HV 126
Query: 304 AKYYSRHLIHEADDNRDGNLTLDEMLN 330
L+ + D N DG + DE L
Sbjct: 127 TDEEIESLMKDGDKNNDGRIDFDEFLK 153
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 21/107 (19%)
Query: 146 IELSDRDGDGEISFYEYLPQFSKQDIEKNGMVHGQAGWWKEQFDNA----DVDSNGTLNF 201
IE D DG G I F E+L +Q M G +E+ D +++G ++
Sbjct: 59 IEEVDEDGSGTIDFEEFLVMMVRQ------MKEDAKGKSEEELAECFRIFDRNADGYIDA 112
Query: 202 DEFYNFLHPEDSNNTAIQRWLLREKLERM----DDDNDGKLNLDEFL 244
+E + T E++E + D +NDG+++ DEFL
Sbjct: 113 EELAEIFRASGEHVT-------DEEIESLMKDGDKNNDGRIDFDEFL 152
>pdb|1TCF|A Chain A, Crystal Structure Of Calcium-Saturated Rabbit Skeletal
Troponin C
pdb|1TN4|A Chain A, Four Calcium Tnc
pdb|2TN4|A Chain A, Four Calcium Tnc
Length = 159
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 57/147 (38%), Gaps = 12/147 (8%)
Query: 184 WKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMDDDNDGKLNLDEF 243
+K FD D D G ++ E + T + L +E +D+D G ++ +EF
Sbjct: 19 FKAAFDMFDADGGGDISVKELGTVMRMLGQTPT---KEELDAIIEEVDEDGSGTIDFEEF 75
Query: 244 LENTYRTYKSYAEFEDDGDGTDFPSAEETFVELDTNKDKLLEVEELKPIFSYLHPGEISY 303
L R K +D G E F D N D ++ EEL IF GE
Sbjct: 76 LVMMVRQMK------EDAKGKSEEELAELFRIFDRNADGYIDAEELAEIFR--ASGE-HV 126
Query: 304 AKYYSRHLIHEADDNRDGNLTLDEMLN 330
L+ + D N DG + DE L
Sbjct: 127 TDEEIESLMKDGDKNNDGRIDFDEFLK 153
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 21/107 (19%)
Query: 146 IELSDRDGDGEISFYEYLPQFSKQDIEKNGMVHGQAGWWKEQ----FDNADVDSNGTLNF 201
IE D DG G I F E+L +Q M G +E+ F D +++G ++
Sbjct: 59 IEEVDEDGSGTIDFEEFLVMMVRQ------MKEDAKGKSEEELAELFRIFDRNADGYIDA 112
Query: 202 DEFYNFLHPEDSNNTAIQRWLLREKLERM----DDDNDGKLNLDEFL 244
+E + T E++E + D +NDG+++ DEFL
Sbjct: 113 EELAEIFRASGEHVT-------DEEIESLMKDGDKNNDGRIDFDEFL 152
>pdb|4TNC|A Chain A, Refined Structure Of Chicken Skeletal Muscle Troponin C In
The Two-Calcium State At 2-Angstroms Resolution
Length = 162
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 60/147 (40%), Gaps = 12/147 (8%)
Query: 184 WKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMDDDNDGKLNLDEF 243
+K FD D D G ++ E + N T + L +E +D+D G ++ +EF
Sbjct: 22 FKAAFDMFDADGGGDISTKELGTVMRMLGQNPT---KEELDAIIEEVDEDGSGTIDFEEF 78
Query: 244 LENTYRTYKSYAEFEDDGDGTDFPSAEETFVELDTNKDKLLEVEELKPIFSYLHPGEISY 303
L R K +D G + F D N D +++EEL I GE
Sbjct: 79 LVMMVRQMK------EDAKGKSEEELADCFRIFDKNADGFIDIEELGEILRA--TGE-HV 129
Query: 304 AKYYSRHLIHEADDNRDGNLTLDEMLN 330
+ L+ ++D N DG + DE L
Sbjct: 130 TEEDIEDLMKDSDKNNDGRIDFDEFLK 156
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 13/103 (12%)
Query: 146 IELSDRDGDGEISFYEYLPQFSKQDIEKNGMVHGQAGWWKEQFDNA----DVDSNGTLNF 201
IE D DG G I F E+L +Q M G +E+ + D +++G ++
Sbjct: 62 IEEVDEDGSGTIDFEEFLVMMVRQ------MKEDAKGKSEEELADCFRIFDKNADGFIDI 115
Query: 202 DEFYNFLHPEDSNNTAIQRWLLREKLERMDDDNDGKLNLDEFL 244
+E L + + + + ++ D +NDG+++ DEFL
Sbjct: 116 EELGEILR---ATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFL 155
>pdb|2R2I|A Chain A, Myristoylated Guanylate Cyclase Activating Protein-1 With
Calcium Bound
Length = 198
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 10/112 (8%)
Query: 142 TQKQIELSDRDGDGEISFYEYLPQFSKQDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNF 201
++ E D + DG I F EY+ S + G V + W+ F DVD NG ++
Sbjct: 54 VEQMFETFDFNKDGYIDFMEYVAALS---LVLKGKVDQKLRWY---FKLYDVDGNGCIDR 107
Query: 202 DEFYNFLHPEDSNNTAIQRWLLRE----KLERMDDDNDGKLNLDEFLENTYR 249
E N + + N + E +++D + DG+L+L+EF+E +
Sbjct: 108 GELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDINGDGELSLEEFMEGVQK 159
>pdb|1YTZ|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Activated State
pdb|1YV0|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Free State
pdb|1NCX|A Chain A, Troponin C
pdb|1NCY|A Chain A, Troponin-C, Complex With Manganese
pdb|1NCZ|A Chain A, Troponin C
pdb|1TOP|A Chain A, Structure Of Chicken Skeletal Muscle Troponin-C At 1.78
Angstroms Resolution
Length = 162
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 59/146 (40%), Gaps = 12/146 (8%)
Query: 184 WKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMDDDNDGKLNLDEF 243
+K FD D D G ++ E + N T + L +E +D+D G ++ +EF
Sbjct: 22 FKAAFDMFDADGGGDISTKELGTVMRMLGQNPT---KEELDAIIEEVDEDGSGTIDFEEF 78
Query: 244 LENTYRTYKSYAEFEDDGDGTDFPSAEETFVELDTNKDKLLEVEELKPIFSYLHPGEISY 303
L R K +D G F D N D +++EEL I GE
Sbjct: 79 LVMMVRQMK------EDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRA--TGE-HV 129
Query: 304 AKYYSRHLIHEADDNRDGNLTLDEML 329
+ L+ ++D N DG + DE L
Sbjct: 130 TEEDIEDLMKDSDKNNDGRIDFDEFL 155
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 13/103 (12%)
Query: 146 IELSDRDGDGEISFYEYLPQFSKQDIEKNGMVHGQAGWWKEQFDNA----DVDSNGTLNF 201
IE D DG G I F E+L +Q M G +E+ N D +++G ++
Sbjct: 62 IEEVDEDGSGTIDFEEFLVMMVRQ------MKEDAKGKSEEELANCFRIFDKNADGFIDI 115
Query: 202 DEFYNFLHPEDSNNTAIQRWLLREKLERMDDDNDGKLNLDEFL 244
+E L + + + + ++ D +NDG+++ DEFL
Sbjct: 116 EELGEILR---ATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFL 155
>pdb|2W49|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4U|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
Length = 159
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 59/146 (40%), Gaps = 12/146 (8%)
Query: 184 WKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMDDDNDGKLNLDEF 243
+K FD D D G ++ E + N T + L +E +D+D G ++ +EF
Sbjct: 19 FKAAFDMFDADGGGDISTKELGTVMRMLGQNPT---KEELDAIIEEVDEDGSGTIDFEEF 75
Query: 244 LENTYRTYKSYAEFEDDGDGTDFPSAEETFVELDTNKDKLLEVEELKPIFSYLHPGEISY 303
L R K +D G F D N D +++EEL I GE
Sbjct: 76 LVMMVRQMK------EDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRA--TGE-HV 126
Query: 304 AKYYSRHLIHEADDNRDGNLTLDEML 329
+ L+ ++D N DG + DE L
Sbjct: 127 TEEDIEDLMKDSDKNNDGRIDFDEFL 152
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 13/103 (12%)
Query: 146 IELSDRDGDGEISFYEYLPQFSKQDIEKNGMVHGQAGWWKEQFDNA----DVDSNGTLNF 201
IE D DG G I F E+L +Q M G +E+ N D +++G ++
Sbjct: 59 IEEVDEDGSGTIDFEEFLVMMVRQ------MKEDAKGKSEEELANCFRIFDKNADGFIDI 112
Query: 202 DEFYNFLHPEDSNNTAIQRWLLREKLERMDDDNDGKLNLDEFL 244
+E L + + + + ++ D +NDG+++ DEFL
Sbjct: 113 EELGEILR---ATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFL 152
>pdb|1TNW|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal
Muscle Troponin C
pdb|1TNX|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal
Muscle Troponin C
Length = 162
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 59/146 (40%), Gaps = 12/146 (8%)
Query: 184 WKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMDDDNDGKLNLDEF 243
+K FD D D G ++ E + N T + L +E +D+D G ++ +EF
Sbjct: 22 FKAAFDMFDADGGGDISTKELGTVMRMLGQNPT---KEELDAIIEEVDEDGSGTIDFEEF 78
Query: 244 LENTYRTYKSYAEFEDDGDGTDFPSAEETFVELDTNKDKLLEVEELKPIFSYLHPGEISY 303
L R K +D G F D N D +++EEL I GE
Sbjct: 79 LVMMVRQMK------EDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRA--TGE-HV 129
Query: 304 AKYYSRHLIHEADDNRDGNLTLDEML 329
+ L+ ++D N DG + DE L
Sbjct: 130 IEEDIEDLMKDSDKNNDGRIDFDEFL 155
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 21/107 (19%)
Query: 146 IELSDRDGDGEISFYEYLPQFSKQDIEKNGMVHGQAGWWKEQFDNA----DVDSNGTLNF 201
IE D DG G I F E+L +Q M G +E+ N D +++G ++
Sbjct: 62 IEEVDEDGSGTIDFEEFLVMMVRQ------MKEDAKGKSEEELANCFRIFDKNADGFIDI 115
Query: 202 DEFYNFLHPEDSNNTAIQRWLLREKLERM----DDDNDGKLNLDEFL 244
+E L A ++ E +E + D +NDG+++ DEFL
Sbjct: 116 EELGEILR-------ATGEHVIEEDIEDLMKDSDKNNDGRIDFDEFL 155
>pdb|1DTL|A Chain A, Crystal Structure Of Calcium-Saturated (3ca2+) Cardiac
Troponin C Complexed With The Calcium Sensitizer
Bepridil At 2.15 A Resolution
pdb|1J1D|A Chain A, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1D|D Chain D, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|A Chain A, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|D Chain D, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
Length = 161
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 9/107 (8%)
Query: 223 LREKLERMDDDNDGKLNLDEFLENTYRTYKSYAEFEDDGDGTDFPSAEETFVELDTNKDK 282
L+E ++ +D+D G ++ DEFL R+ K DD G + F D N D
Sbjct: 57 LQEMIDEVDEDGSGTVDFDEFLVMMVRSMK------DDSKGKSEEELSDLFRMFDKNADG 110
Query: 283 LLEVEELKPIFSYLHPGEISYAKYYSRHLIHEADDNRDGNLTLDEML 329
+++EELK + GE + + L+ + D N DG + DE L
Sbjct: 111 YIDLEELKIMLQ--ATGE-TITEDDIEELMKDGDKNNDGRIDYDEFL 154
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 13/134 (9%)
Query: 116 PKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSKQDIEKNG 175
+DG +S EL L + Q+ I+ D DG G + F E+L +
Sbjct: 31 AEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRS------ 84
Query: 176 MVHGQAGWWKEQFDNA----DVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMD 231
M G +E+ + D +++G ++ +E L + I + E ++ D
Sbjct: 85 MKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQ---ATGETITEDDIEELMKDGD 141
Query: 232 DDNDGKLNLDEFLE 245
+NDG+++ DEFLE
Sbjct: 142 KNNDGRIDYDEFLE 155
>pdb|1AJ4|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 1
Structure
Length = 161
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 9/107 (8%)
Query: 223 LREKLERMDDDNDGKLNLDEFLENTYRTYKSYAEFEDDGDGTDFPSAEETFVELDTNKDK 282
L+E ++ +D+D G ++ DEFL R+ K DD G + F D N D
Sbjct: 57 LQEMIDEVDEDGSGTVDFDEFLVMMVRSMK------DDSKGKTEEELSDLFRMFDKNADG 110
Query: 283 LLEVEELKPIFSYLHPGEISYAKYYSRHLIHEADDNRDGNLTLDEML 329
+++EELK + GE + + L+ + D N DG + DE L
Sbjct: 111 YIDLEELKIMLQ--ATGE-TITEDDIEELMKDGDKNNDGRIDYDEFL 154
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 13/134 (9%)
Query: 116 PKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSKQDIEKNG 175
+DG +S EL L + Q+ I+ D DG G + F E+L +
Sbjct: 31 AEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRS------ 84
Query: 176 MVHGQAGWWKEQFDNA----DVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMD 231
M G +E+ + D +++G ++ +E L + I + E ++ D
Sbjct: 85 MKDDSKGKTEEELSDLFRMFDKNADGYIDLEELKIMLQ---ATGETITEDDIEELMKDGD 141
Query: 232 DDNDGKLNLDEFLE 245
+NDG+++ DEFLE
Sbjct: 142 KNNDGRIDYDEFLE 155
>pdb|1LA0|A Chain A, Solution Structure Of Calcium Saturated Cardiac Troponin C
In The Troponin C-Troponin I Complex
Length = 161
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 223 LREKLERMDDDNDGKLNLDEFLENTYRTYKSYAEFEDDGDGTDFPSAEETFVELDTNKDK 282
L+E ++ +D+D G ++ DEFL R K DD G + F D N D
Sbjct: 57 LQEMIDEVDEDGSGTVDFDEFLVMMVRCMK------DDSKGKTEEELSDLFRMFDKNADG 110
Query: 283 LLEVEELKPIFSYLHPGEISYAKYYSRHLIHEADDNRDGNLTLDEML 329
+++EELK + GE + + L+ + D N DG + DE L
Sbjct: 111 YIDLEELKIMLQ--ATGE-TITEDDIEELMKDGDKNNDGRIDYDEFL 154
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 13/134 (9%)
Query: 116 PKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSKQDIEKNG 175
+DG +S EL L + Q+ I+ D DG G + F E+L +
Sbjct: 31 AEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVR------C 84
Query: 176 MVHGQAGWWKEQFDNA----DVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMD 231
M G +E+ + D +++G ++ +E L + I + E ++ D
Sbjct: 85 MKDDSKGKTEEELSDLFRMFDKNADGYIDLEELKIMLQ---ATGETITEDDIEELMKDGD 141
Query: 232 DDNDGKLNLDEFLE 245
+NDG+++ DEFLE
Sbjct: 142 KNNDGRIDYDEFLE 155
>pdb|3SG5|A Chain A, Crystal Structure Of Dimeric Gcamp3-D380y, Qp(Linker 1),
Lp(Linker 2)
Length = 448
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DGDG I F E+L ++
Sbjct: 316 FSLFDKD-GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMAR 374
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 375 KMKYTDSEEE---------IREAFRVFDKDGNGYISAAELRHVM-------TNLGEKLTD 418
Query: 225 EKLERM----DDDNDGKLNLDEFLE 245
E+++ M D D DG++N +EF++
Sbjct: 419 EEVDEMIREADIDGDGQVNYEEFVQ 443
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 15/151 (9%)
Query: 180 QAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMDDDNDGKLN 239
Q +KE F D D +GT+ E + N T + L++ + +D D DG ++
Sbjct: 308 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGDGTID 364
Query: 240 LDEFLENTYRTYKSYAEFEDDGDGTDFPSAEETFVELDTNKDKLLEVEELKPIFSYLHPG 299
EFL R K Y + E++ E F D + + + EL+ + + L G
Sbjct: 365 FPEFLTMMARKMK-YTDSEEE--------IREAFRVFDKDGNGYISAAELRHVMTNL--G 413
Query: 300 EISYAKYYSRHLIHEADDNRDGNLTLDEMLN 330
E +I EAD + DG + +E +
Sbjct: 414 E-KLTDEEVDEMIREADIDGDGQVNYEEFVQ 443
>pdb|3SG4|A Chain A, Crystal Structure Of Gcamp3-D380y, Lp(Linker 2)
Length = 448
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DGDG I F E+L ++
Sbjct: 316 FSLFDKD-GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMAR 374
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 375 KMKYTDSEEE---------IREAFRVFDKDGNGYISAAELRHVM-------TNLGEKLTD 418
Query: 225 EKLERM----DDDNDGKLNLDEFLE 245
E+++ M D D DG++N +EF++
Sbjct: 419 EEVDEMIREADIDGDGQVNYEEFVQ 443
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 15/151 (9%)
Query: 180 QAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMDDDNDGKLN 239
Q +KE F D D +GT+ E + N T + L++ + +D D DG ++
Sbjct: 308 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGDGTID 364
Query: 240 LDEFLENTYRTYKSYAEFEDDGDGTDFPSAEETFVELDTNKDKLLEVEELKPIFSYLHPG 299
EFL R K Y + E++ E F D + + + EL+ + + L G
Sbjct: 365 FPEFLTMMARKMK-YTDSEEE--------IREAFRVFDKDGNGYISAAELRHVMTNL--G 413
Query: 300 EISYAKYYSRHLIHEADDNRDGNLTLDEMLN 330
E +I EAD + DG + +E +
Sbjct: 414 E-KLTDEEVDEMIREADIDGDGQVNYEEFVQ 443
>pdb|3SG7|A Chain A, Crystal Structure Of Gcamp3-Kf(Linker 1)
Length = 448
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DGDG I F E+L ++
Sbjct: 316 FSLFDKD-GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMAR 374
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 375 KMKDTDSEEE---------IREAFRVFDKDGNGYISAAELRHVM-------TNLGEKLTD 418
Query: 225 EKLERM----DDDNDGKLNLDEFLE 245
E+++ M D D DG++N +EF++
Sbjct: 419 EEVDEMIREADIDGDGQVNYEEFVQ 443
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 60/151 (39%), Gaps = 15/151 (9%)
Query: 180 QAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMDDDNDGKLN 239
Q +KE F D D +GT+ E + N T + L++ + +D D DG ++
Sbjct: 308 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGDGTID 364
Query: 240 LDEFLENTYRTYKSYAEFEDDGDGTDFPSAEETFVELDTNKDKLLEVEELKPIFSYLHPG 299
EFL R K E+ E F D + + + EL+ + + L G
Sbjct: 365 FPEFLTMMARKMKDTDSEEE---------IREAFRVFDKDGNGYISAAELRHVMTNL--G 413
Query: 300 EISYAKYYSRHLIHEADDNRDGNLTLDEMLN 330
E +I EAD + DG + +E +
Sbjct: 414 E-KLTDEEVDEMIREADIDGDGQVNYEEFVQ 443
>pdb|3SG3|A Chain A, Crystal Structure Of Gcamp3-D380y
Length = 449
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DGDG I F E+L ++
Sbjct: 317 FSLFDKD-GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMAR 375
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 376 KMKYTDSEEE---------IREAFRVFDKDGNGYISAAELRHVM-------TNLGEKLTD 419
Query: 225 EKLERM----DDDNDGKLNLDEFLE 245
E+++ M D D DG++N +EF++
Sbjct: 420 EEVDEMIREADIDGDGQVNYEEFVQ 444
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 15/151 (9%)
Query: 180 QAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMDDDNDGKLN 239
Q +KE F D D +GT+ E + N T + L++ + +D D DG ++
Sbjct: 309 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGDGTID 365
Query: 240 LDEFLENTYRTYKSYAEFEDDGDGTDFPSAEETFVELDTNKDKLLEVEELKPIFSYLHPG 299
EFL R K Y + E++ E F D + + + EL+ + + L G
Sbjct: 366 FPEFLTMMARKMK-YTDSEEE--------IREAFRVFDKDGNGYISAAELRHVMTNL--G 414
Query: 300 EISYAKYYSRHLIHEADDNRDGNLTLDEMLN 330
E +I EAD + DG + +E +
Sbjct: 415 E-KLTDEEVDEMIREADIDGDGQVNYEEFVQ 444
>pdb|3U0K|A Chain A, Crystal Structure Of The Genetically Encoded Calcium
Indicator Rcamp
Length = 440
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DGDG I F E+L ++
Sbjct: 308 FSLFDKD-GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLIMMAR 366
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 367 KMKDTDSEEE---------IREAFRVFDKDGNGYISAAELRHVM-------TNLGEKLTD 410
Query: 225 EKLERM----DDDNDGKLNLDEFLE 245
E+++ M D D DG++N +EF++
Sbjct: 411 EEVDEMIREADIDGDGQVNYEEFVQ 435
>pdb|2JT8|A Chain A, Solution Structure Of The F153-To-5-Flurotryptophan Mutant
Of Human Cardiac Troponin C
Length = 161
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 9/107 (8%)
Query: 223 LREKLERMDDDNDGKLNLDEFLENTYRTYKSYAEFEDDGDGTDFPSAEETFVELDTNKDK 282
L+E ++ +D+D G ++ DEFL R+ K DD G + F D N D
Sbjct: 57 LQEMIDEVDEDGSGTVDFDEFLVMMVRSMK------DDSKGKSEEELSDLFRMFDKNADG 110
Query: 283 LLEVEELKPIFSYLHPGEISYAKYYSRHLIHEADDNRDGNLTLDEML 329
++++ELK + GE + + L+ + D N DG + DE L
Sbjct: 111 YIDLDELKIMLQ--ATGE-TITEDDIEELMKDGDKNNDGRIDYDEXL 154
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 13/134 (9%)
Query: 116 PKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSKQDIEKNG 175
+DG +S EL L + Q+ I+ D DG G + F E+L +
Sbjct: 31 AEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRS------ 84
Query: 176 MVHGQAGWWKEQFDNA----DVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMD 231
M G +E+ + D +++G ++ DE L + I + E ++ D
Sbjct: 85 MKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQ---ATGETITEDDIEELMKDGD 141
Query: 232 DDNDGKLNLDEFLE 245
+NDG+++ DE LE
Sbjct: 142 KNNDGRIDYDEXLE 155
>pdb|2JT3|A Chain A, Solution Structure Of F153w Cardiac Troponin C
Length = 161
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 9/107 (8%)
Query: 223 LREKLERMDDDNDGKLNLDEFLENTYRTYKSYAEFEDDGDGTDFPSAEETFVELDTNKDK 282
L+E ++ +D+D G ++ DEFL R+ K DD G + F D N D
Sbjct: 57 LQEMIDEVDEDGSGTVDFDEFLVMMVRSMK------DDSKGKSEEELSDLFRMFDKNADG 110
Query: 283 LLEVEELKPIFSYLHPGEISYAKYYSRHLIHEADDNRDGNLTLDEML 329
++++ELK + GE + + L+ + D N DG + DE L
Sbjct: 111 YIDLDELKIMLQ--ATGE-TITEDDIEELMKDGDKNNDGRIDYDEWL 154
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 13/134 (9%)
Query: 116 PKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSKQDIEKNG 175
+DG +S EL L + Q+ I+ D DG G + F E+L +
Sbjct: 31 AEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRS------ 84
Query: 176 MVHGQAGWWKEQFDNA----DVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMD 231
M G +E+ + D +++G ++ DE L + I + E ++ D
Sbjct: 85 MKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQ---ATGETITEDDIEELMKDGD 141
Query: 232 DDNDGKLNLDEFLE 245
+NDG+++ DE+LE
Sbjct: 142 KNNDGRIDYDEWLE 155
>pdb|2BEC|A Chain A, Crystal Structure Of Chp2 In Complex With Its Binding
Region In Nhe1 And Insights Into The Mechanism Of Ph
Regulation
Length = 202
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 104 RLIYLFPLIDNEPKDGVLSLNELDNW-----NVELAVDRLSYTTQKQIELSDRDGDGEIS 158
+L Y F L D + +DG +S +E+ V++ ++L + ++ +D DGDG +S
Sbjct: 115 KLHYAFQLYDLD-RDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVS 173
Query: 159 FYEYLPQFSKQDIEKN 174
F E+ K D+E+
Sbjct: 174 FVEFTKSLEKMDVEQK 189
>pdb|2JT0|A Chain A, Solution Structure Of F104w Cardiac Troponin C
Length = 161
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 9/107 (8%)
Query: 223 LREKLERMDDDNDGKLNLDEFLENTYRTYKSYAEFEDDGDGTDFPSAEETFVELDTNKDK 282
L+E ++ +D+D G ++ DEFL R+ K DD G + F D N D
Sbjct: 57 LQEMIDEVDEDGSGTVDFDEFLVMMVRSMK------DDSKGKSEEELSDLFRMWDKNADG 110
Query: 283 LLEVEELKPIFSYLHPGEISYAKYYSRHLIHEADDNRDGNLTLDEML 329
++++ELK + GE + + L+ + D N DG + DE L
Sbjct: 111 YIDLDELKIMLQ--ATGE-TITEDDIEELMKDGDKNNDGRIDYDEFL 154
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 13/134 (9%)
Query: 116 PKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSKQDIEKNG 175
+DG +S EL L + Q+ I+ D DG G + F E+L +
Sbjct: 31 AEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRS------ 84
Query: 176 MVHGQAGWWKEQFDNA----DVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMD 231
M G +E+ + D +++G ++ DE L + I + E ++ D
Sbjct: 85 MKDDSKGKSEEELSDLFRMWDKNADGYIDLDELKIMLQ---ATGETITEDDIEELMKDGD 141
Query: 232 DDNDGKLNLDEFLE 245
+NDG+++ DEFLE
Sbjct: 142 KNNDGRIDYDEFLE 155
>pdb|2JTZ|A Chain A, Solution Structure And Chemical Shift Assignments Of The
F104-To-5-Flurotryptophan Mutant Of Cardiac Troponin C
Length = 161
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 9/107 (8%)
Query: 223 LREKLERMDDDNDGKLNLDEFLENTYRTYKSYAEFEDDGDGTDFPSAEETFVELDTNKDK 282
L+E ++ +D+D G ++ DEFL R+ K DD G + F D N D
Sbjct: 57 LQEMIDEVDEDGSGTVDFDEFLVMMVRSMK------DDSKGKSEEELSDLFRMXDKNADG 110
Query: 283 LLEVEELKPIFSYLHPGEISYAKYYSRHLIHEADDNRDGNLTLDEML 329
++++ELK + GE + + L+ + D N DG + DE L
Sbjct: 111 YIDLDELKIMLQ--ATGE-TITEDDIEELMKDGDKNNDGRIDYDEFL 154
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 13/134 (9%)
Query: 116 PKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSKQDIEKNG 175
+DG +S EL L + Q+ I+ D DG G + F E+L +
Sbjct: 31 AEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRS------ 84
Query: 176 MVHGQAGWWKEQ----FDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMD 231
M G +E+ F D +++G ++ DE L + I + E ++ D
Sbjct: 85 MKDDSKGKSEEELSDLFRMXDKNADGYIDLDELKIMLQ---ATGETITEDDIEELMKDGD 141
Query: 232 DDNDGKLNLDEFLE 245
+NDG+++ DEFLE
Sbjct: 142 KNNDGRIDYDEFLE 155
>pdb|2JUL|A Chain A, Nmr Structure Of Dream
Length = 256
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 25/114 (21%)
Query: 150 DRDGDGEISFYEYLPQFSKQDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLH 209
D DG+G I F +++ S I G VH + W F+ D++ +G + +E +
Sbjct: 139 DADGNGAIHFEDFVVGLS---ILLRGTVHEKLKW---AFNLYDINKDGCITKEEMLAIMK 192
Query: 210 P--------------EDSNNTAIQRWLLREKLERMDDDNDGKLNLDEFLENTYR 249
ED+ ++R+ ++MD + DG + +DEFLE +
Sbjct: 193 SIYDMMGRHTYPILREDAPLEHVERFF-----QKMDRNQDGVVTIDEFLETCQK 241
>pdb|1MF8|B Chain B, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
Length = 170
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 142 TQKQIELSDRDGDGEISFYEYLPQFSKQDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNF 201
Q+ I++ D DG+GE+ F E++ S+ ++ + + + F D+D +G ++
Sbjct: 55 VQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGD-----KEQKLRFAFRIYDMDKDGYISN 109
Query: 202 DEFYNFLHPEDSNN---TAIQRWLLREKLERMDDDNDGKLNLDEFL 244
E + L NN T +Q+ ++ + + D D DG+++ +EF
Sbjct: 110 GELFQVLKMMVGNNLKDTQLQQ-IVDKTIINADKDGDGRISFEEFC 154
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 186 EQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMDDDNDGKLNLDEFLE 245
++F D+D++G+L+ +EF + PE N +QR ++ D D +G+++ EF+E
Sbjct: 25 KRFKKLDLDNSGSLSVEEFMSL--PELQQNPLVQRV-----IDIFDTDGNGEVDFKEFIE 77
Query: 246 NT 247
Sbjct: 78 GV 79
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 137 RLSYTTQKQIELSDRDGDGEISFYEYLPQFSKQDIEKNGMV 177
+L K I +D+DGDG ISF E+ DI K +V
Sbjct: 128 QLQQIVDKTIINADKDGDGRISFEEFCAVVGGLDIHKKMVV 168
>pdb|1TCO|B Chain B, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
pdb|1AUI|B Chain B, Human Calcineurin Heterodimer
pdb|1M63|B Chain B, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|F Chain F, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
Length = 169
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 142 TQKQIELSDRDGDGEISFYEYLPQFSKQDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNF 201
Q+ I++ D DG+GE+ F E++ S+ ++ + + + F D+D +G ++
Sbjct: 54 VQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGD-----KEQKLRFAFRIYDMDKDGYISN 108
Query: 202 DEFYNFLHPEDSNN---TAIQRWLLREKLERMDDDNDGKLNLDEFL 244
E + L NN T +Q+ ++ + + D D DG+++ +EF
Sbjct: 109 GELFQVLKMMVGNNLKDTQLQQ-IVDKTIINADKDGDGRISFEEFC 153
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 186 EQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMDDDNDGKLNLDEFLE 245
++F D+D++G+L+ +EF + PE N +QR ++ D D +G+++ EF+E
Sbjct: 24 KRFKKLDLDNSGSLSVEEFMSL--PELQQNPLVQRV-----IDIFDTDGNGEVDFKEFIE 76
Query: 246 NT 247
Sbjct: 77 GV 78
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 137 RLSYTTQKQIELSDRDGDGEISFYEYLPQFSKQDIEKNGMV 177
+L K I +D+DGDG ISF E+ DI K +V
Sbjct: 127 QLQQIVDKTIINADKDGDGRISFEEFCAVVGGLDIHKKMVV 167
>pdb|1BJF|A Chain A, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
pdb|1BJF|B Chain B, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
Length = 193
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 23/111 (20%)
Query: 150 DRDGDGEISFYEYLPQFSKQDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLH 209
D +GDG I F E++ S + G + + W F D+D NG ++ E +
Sbjct: 73 DANGDGTIDFREFIIALS---VTSRGKLEQKLKW---AFSMYDLDGNGYISKAEMLEIVQ 126
Query: 210 ------------PEDSNNTAIQRWLLREKLER-MDDDNDGKLNLDEFLENT 247
PED +T +R EK+ R MD + DGKL+L+EF+
Sbjct: 127 AIYKMVSSVMKMPED-ESTPEKR---TEKIFRQMDTNRDGKLSLEEFIRGA 173
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 169 QDIEKNGMVHGQAGWWKEQ-FDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKL 227
+ I N +G A + E F D + +GT++F EF L + R L +KL
Sbjct: 49 KKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIAL-------SVTSRGKLEQKL 101
Query: 228 E----RMDDDNDGKLNLDEFLENTYRTYK---SYAEFEDDGDGTDFPSAEETFVELDTNK 280
+ D D +G ++ E LE YK S + +D + T E+ F ++DTN+
Sbjct: 102 KWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPED-ESTPEKRTEKIFRQMDTNR 160
Query: 281 DKLLEVEEL 289
D L +EE
Sbjct: 161 DGKLSLEEF 169
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1,
Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 148 LSDRDGDGEISFYEYLPQFSKQDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNF 207
L D DG G I + E++ I++ ++ + + F D D +G ++ E +
Sbjct: 389 LLDMDGSGSIEYSEFIAS----AIDRTILLSRER--MERAFKMFDKDGSGKISTKELFKL 442
Query: 208 LHPEDSNNTAIQRWLLREKLERMDDDNDGKLNLDEFLE 245
DS +IQ L +E++D++ DG+++ +EF+E
Sbjct: 443 FSQADS---SIQMEELESIIEQVDNNKDGEVDFNEFVE 477
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 68/165 (41%), Gaps = 60/165 (36%)
Query: 171 IEKNGMVHGQAGWWKEQFDNA----DVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLL--R 224
++ N ++ + ++Q D+ D+D +G++ + EF +AI R +L R
Sbjct: 366 VDSNSLIQNEGSTIEDQIDSLMPLLDMDGSGSIEYSEFIA---------SAIDRTILLSR 416
Query: 225 EKLERMDDDNDGKLNLDEFLENTYRTYKSYAEFEDDGDGTDFPSAEETFVELDTNKDKLL 284
E++ER ++ F+ DG G S +E F +L + D +
Sbjct: 417 ERMER-----------------------AFKMFDKDGSGK--ISTKELF-KLFSQADSSI 450
Query: 285 EVEELKPIFSYLHPGEISYAKYYSRHLIHEADDNRDGNLTLDEML 329
++EEL+ I I + D+N+DG + +E +
Sbjct: 451 QMEELESI-------------------IEQVDNNKDGEVDFNEFV 476
>pdb|3SG6|A Chain A, Crystal Structure Of Dimeric Gcamp2-Lia(Linker 1)
Length = 450
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 318 FSLFDKD-GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 376
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 377 KMKDTDSEEE---------IREAFRVFDKDGNGYISAAELRHVM-------TNLGEKLTD 420
Query: 225 EKLERM----DDDNDGKLNLDEFLE 245
E+++ M D D DG++N +EF++
Sbjct: 421 EEVDEMIREADIDGDGQVNYEEFVQ 445
>pdb|3SG2|A Chain A, Crystal Structure Of Gcamp2-T116v,D381y
Length = 449
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 317 FSLFDKD-GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 375
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 376 KMKYTDSEEE---------IREAFRVFDKDGNGYISAAELRHVM-------TNLGEKLTD 419
Query: 225 EKLERM----DDDNDGKLNLDEFLE 245
E+++ M D D DG++N +EF++
Sbjct: 420 EEVDEMIREADIDGDGQVNYEEFVQ 444
>pdb|2P6B|B Chain B, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
pdb|2P6B|D Chain D, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
Length = 156
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 142 TQKQIELSDRDGDGEISFYEYLPQFSKQDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNF 201
Q+ I++ D DG+GE+ F E++ S+ ++ + + + F D+D +G ++
Sbjct: 41 VQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGD-----KEQKLRFAFRIYDMDKDGYISN 95
Query: 202 DEFYNFLHPEDSNN---TAIQRWLLREKLERMDDDNDGKLNLDEFL 244
E + L NN T +Q+ ++ + + D D DG+++ +EF
Sbjct: 96 GELFQVLKMMVGNNLKDTQLQQ-IVDKTIINADKDGDGRISFEEFC 140
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 186 EQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMDDDNDGKLNLDEFLE 245
++F D+D++G+L+ +EF + PE N +QR ++ D D +G+++ EF+E
Sbjct: 11 KRFKKLDLDNSGSLSVEEFMSL--PELQQNPLVQRV-----IDIFDTDGNGEVDFKEFIE 63
Query: 246 NT 247
Sbjct: 64 GV 65
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 137 RLSYTTQKQIELSDRDGDGEISFYEYLPQFSKQDIEKNGMV 177
+L K I +D+DGDG ISF E+ DI K +V
Sbjct: 114 QLQQIVDKTIINADKDGDGRISFEEFCAVVGGLDIHKKMVV 154
>pdb|3LL8|B Chain B, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
pdb|3LL8|D Chain D, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
Length = 155
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 142 TQKQIELSDRDGDGEISFYEYLPQFSKQDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNF 201
Q+ I++ D DG+GE+ F E++ S+ ++ + + + F D+D +G ++
Sbjct: 40 VQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGD-----KEQKLRFAFRIYDMDKDGYISN 94
Query: 202 DEFYNFLHPEDSNN---TAIQRWLLREKLERMDDDNDGKLNLDEFL 244
E + L NN T +Q+ ++ + + D D DG+++ +EF
Sbjct: 95 GELFQVLKMMVGNNLKDTQLQQ-IVDKTIINADKDGDGRISFEEFC 139
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 186 EQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMDDDNDGKLNLDEFLE 245
++F D+D++G+L+ +EF + PE N +QR ++ D D +G+++ EF+E
Sbjct: 10 KRFKKLDLDNSGSLSVEEFMSL--PELQQNPLVQRV-----IDIFDTDGNGEVDFKEFIE 62
Query: 246 NT 247
Sbjct: 63 GV 64
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 137 RLSYTTQKQIELSDRDGDGEISFYEYLPQFSKQDIEKNGMV 177
+L K I +D+DGDG ISF E+ DI K +V
Sbjct: 113 QLQQIVDKTIINADKDGDGRISFEEFCAVVGGLDIHKKMVV 153
>pdb|3EVU|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2, (#1)
pdb|3EVV|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2 (#2)
pdb|3EK4|A Chain A, Calcium-Saturated Gcamp2 Monomer
pdb|3EK7|A Chain A, Calcium-Saturated Gcamp2 Dimer
Length = 449
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 317 FSLFDKD-GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 375
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 376 KMKDTDSEEE---------IREAFRVFDKDGNGYISAAELRHVM-------TNLGEKLTD 419
Query: 225 EKLERM----DDDNDGKLNLDEFLE 245
E+++ M D D DG++N +EF++
Sbjct: 420 EEVDEMIREADIDGDGQVNYEEFVQ 444
>pdb|3EK8|A Chain A, Calcium-Saturated Gcamp2 T116vG87R MUTANT MONOMER
Length = 449
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 317 FSLFDKD-GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 375
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 376 KMKDTDSEEE---------IREAFRVFDKDGNGYISAAELRHVM-------TNLGEKLTD 419
Query: 225 EKLERM----DDDNDGKLNLDEFLE 245
E+++ M D D DG++N +EF++
Sbjct: 420 EEVDEMIREADIDGDGQVNYEEFVQ 444
>pdb|2K0J|A Chain A, Solution Structure Of Cam Complexed To Drp1p
pdb|2K61|A Chain A, Solution Structure Of Cam Complexed To Dapk Peptide
Length = 148
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DGDG I F E+L ++
Sbjct: 16 FSLFDKDG-DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMAR 74
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 75 KMKDTDSEEE---------IREAFRVFDKDGNGYISAAELRHVM-------TNLGEKLTD 118
Query: 225 EKLERM----DDDNDGKLNLDEFLE 245
E+++ M D D DG++N +EF++
Sbjct: 119 EEVDEMIREADIDGDGQVNYEEFVQ 143
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 60/151 (39%), Gaps = 15/151 (9%)
Query: 180 QAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMDDDNDGKLN 239
Q +KE F D D +GT+ E + N T + L++ + +D D DG ++
Sbjct: 8 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGDGTID 64
Query: 240 LDEFLENTYRTYKSYAEFEDDGDGTDFPSAEETFVELDTNKDKLLEVEELKPIFSYLHPG 299
EFL R K E+ E F D + + + EL+ + + L G
Sbjct: 65 FPEFLTMMARKMKDTDSEEE---------IREAFRVFDKDGNGYISAAELRHVMTNL--G 113
Query: 300 EISYAKYYSRHLIHEADDNRDGNLTLDEMLN 330
E +I EAD + DG + +E +
Sbjct: 114 E-KLTDEEVDEMIREADIDGDGQVNYEEFVQ 143
>pdb|2JNX|A Chain A, Nmr Derived Solution Structure Of An Ef-Hand Calcium
Binding Protein From Entamoeba Histolytica
Length = 134
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 150 DRDGDGEISFYEYLPQF--SKQDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNF 207
D +GDG +S YE + F SK+ I+ ++ F D+D NG ++ EF F
Sbjct: 10 DANGDGSVS-YEEVKAFVSSKRPIKNEQLLQ-------LIFKAIDIDGNGEIDLAEFTKF 61
Query: 208 LHPEDSNNTAIQRWLLREKLERMDDDNDGKLNLDE 242
+ + ++ L+ + MD D DGKL +E
Sbjct: 62 AAAVKEQDLSDEKVGLKILYKLMDADGDGKLTKEE 96
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 19/143 (13%)
Query: 188 FDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMDDDNDGKLNLDEFLENT 247
F D + +G+++++E F+ S LL+ + +D D +G+++L EF +
Sbjct: 6 FKQLDANGDGSVSYEEVKAFVS---SKRPIKNEQLLQLIFKAIDIDGNGEIDLAEFTK-- 60
Query: 248 YRTYKSYAEFEDDGDGTDFPSAEETFVEL-DTNKDKLLEVEELKPIFSYLHPGEISYAKY 306
+A + D +D + +L D + D L EE+ F + Y K
Sbjct: 61 ------FAAAVKEQDLSDEKVGLKILYKLMDADGDGKLTKEEVTTFFK-----KFGYEKV 109
Query: 307 YSRHLIHEADDNRDGNLTLDEML 329
+ I +AD N DG +TL+E L
Sbjct: 110 VDQ--IMKADANGDGYITLEEFL 130
>pdb|3EVR|A Chain A, Crystal Structure Of Calcium Bound Monomeric Gcamp2
Length = 411
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 280 FSLFDKD-GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 338
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 339 KMKDTDSEEE---------IREAFRVFDKDGNGYISAAELRHVM-------TNLGEKLTD 382
Query: 225 EKLERM----DDDNDGKLNLDEFLE 245
E+++ M D D DG++N +EF++
Sbjct: 383 EEVDEMIREADIDGDGQVNYEEFVQ 407
>pdb|3O78|A Chain A, The Structure Of Ca2+ Sensor (Case-12)
pdb|3O78|B Chain B, The Structure Of Ca2+ Sensor (Case-12)
Length = 415
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 283 FSLFDKD-GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 341
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 342 KMKDTDSEEE---------IREAFRVFDKDGNGYISAAELRHVM-------TNLGEKLTD 385
Query: 225 EKLERM----DDDNDGKLNLDEFLE 245
E+++ M D D DG++N +EF++
Sbjct: 386 EEVDEMIREADIDGDGQVNYEEFVQ 410
>pdb|3O77|A Chain A, The Structure Of Ca2+ Sensor (Case-16)
Length = 415
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 283 FSLFDKD-GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 341
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 342 KMKDTDSEEE---------IREAFRVFDKDGNGYISAAELRHVM-------TNLGEKLTD 385
Query: 225 EKLERM----DDDNDGKLNLDEFLE 245
E+++ M D D DG++N +EF++
Sbjct: 386 EEVDEMIREADIDGDGQVNYEEFVQ 410
>pdb|3EKH|A Chain A, Calcium-Saturated Gcamp2 T116vK378W MUTANT MONOMER
Length = 449
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 21/143 (14%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 317 FSLFDKD-GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 375
Query: 169 --QDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREK 226
+D + + +E F D D NG ++ E + + T + L E+
Sbjct: 376 WMKDTDSEEEI-------REAFRVFDKDGNGYISAAELRHVM-------TNLGEKLTDEE 421
Query: 227 LERM----DDDNDGKLNLDEFLE 245
++ M D D DG++N +EF++
Sbjct: 422 VDEMIREADIDGDGQVNYEEFVQ 444
>pdb|2L2E|A Chain A, Solution Nmr Structure Of Myristoylated Ncs1p In Apo Form
Length = 190
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 21/112 (18%)
Query: 150 DRDGDGEISFYEYLPQFSKQDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLH 209
D D +G I F E++ S + G ++ + W F D+D+NG +++DE +
Sbjct: 73 DADKNGYIDFKEFICALS---VTSRGELNDKLIW---AFQLYDLDNNGLISYDEMLRIVD 126
Query: 210 ------------PEDSNNTAIQRWLLREKLERMDDDNDGKLNLDEFLENTYR 249
PED +T +R + + MD + DG+L L+EF E + R
Sbjct: 127 AIYKMVGSMVKLPED-EDTPEKR--VNKIFNMMDKNKDGQLTLEEFCEGSKR 175
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 15/109 (13%)
Query: 188 FDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKL----ERMDDDNDGKLNLDEF 243
F+ D D NG ++F EF L + R L +KL + D DN+G ++ DE
Sbjct: 69 FNVFDADKNGYIDFKEFICAL-------SVTSRGELNDKLIWAFQLYDLDNNGLISYDEM 121
Query: 244 L---ENTYRTYKSYAEFEDDGDGTDFPSAEETFVELDTNKDKLLEVEEL 289
L + Y+ S + +D D T + F +D NKD L +EE
Sbjct: 122 LRIVDAIYKMVGSMVKLPEDED-TPEKRVNKIFNMMDKNKDGQLTLEEF 169
>pdb|3MSE|B Chain B, Crystal Structure Of C-Terminal Domain Of Pf110239
Length = 180
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 175 GMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMDDDN 234
+++ + E F D + NG+L+ E Y L I++W + L+ +D ++
Sbjct: 32 SVINNHIKYINELFYKLDTNHNGSLSHREIYTVLAS-----VGIKKWDINRILQALDIND 86
Query: 235 DGKLNLDEFLENTYR 249
G + EF+ YR
Sbjct: 87 RGNITYTEFMAGCYR 101
>pdb|1DEG|A Chain A, The Linker Of Des-Glu84 Calmodulin Is Bent As Seen In The
Crystal Structure
Length = 142
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 18/141 (12%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 12 FSLFDKDG-DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 70
Query: 169 QDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLE 228
+ M + +E F D D NG ++ E + + T + L E+++
Sbjct: 71 K------MKDTDSEEIREAFRVFDKDGNGYISAAELRHVM-------TNLGEKLTDEEVD 117
Query: 229 RM----DDDNDGKLNLDEFLE 245
M + D DG++N +EF++
Sbjct: 118 EMIREANIDGDGQVNYEEFVQ 138
>pdb|1JWO|A Chain A, Crystal Structure Analysis Of The Sh2 Domain Of The Csk
Homologous Kinase Chk
Length = 97
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 268 SAEETFVELDTNKDKLLEVEELKPIFSYLHPGEISYAKYYSRHLIHEADDNRDGNLTLDE 327
S +E +L +D L V E S HPG+ + R +IH +RDG+LT+DE
Sbjct: 12 SGQEAVQQLQPPEDGLFLVRE-----SARHPGDYVLCVSFGRDVIHYRVLHRDGHLTIDE 66
>pdb|3US4|A Chain A, Crystal Structure Of A Sh2 Domain Of A
Megakaryocyte-Associated Tyrosine Kinase (Matk) From
Homo Sapiens At 1.50 A Resolution
Length = 98
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 268 SAEETFVELDTNKDKLLEVEELKPIFSYLHPGEISYAKYYSRHLIHEADDNRDGNLTLDE 327
S +E +L +D L V E S HPG+ + R +IH +RDG+LT+DE
Sbjct: 13 SGQEAVQQLQPPEDGLFLVRE-----SARHPGDYVLCVSFGRDVIHYRVLHRDGHLTIDE 67
>pdb|1RFJ|A Chain A, Crystal Structure Of Potato Calmodulin Pcm6
Length = 149
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 17/140 (12%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 17 FSLFDKDG-DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAR 75
Query: 169 QDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLE 228
+ + + KE F D D NG ++ E + + T + L E+++
Sbjct: 76 KMKDTD-----SEEELKEAFRVFDKDQNGFISAAELRHVM-------TNLGEKLTDEEVD 123
Query: 229 RM----DDDNDGKLNLDEFL 244
M D D DG++N DEF+
Sbjct: 124 EMIREADVDGDGQINYDEFV 143
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 62/154 (40%), Gaps = 15/154 (9%)
Query: 176 MVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMDDDND 235
+ Q +KE F D D +G + E + N T + L++ + +D D +
Sbjct: 5 LTEDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGN 61
Query: 236 GKLNLDEFLENTYRTYKSYAEFEDDGDGTDFPSAEETFVELDTNKDKLLEVEELKPIFSY 295
G ++ EFL R K E+ +E F D +++ + EL+ + +
Sbjct: 62 GTIDFPEFLNLMARKMKDTDSEEE---------LKEAFRVFDKDQNGFISAAELRHVMTN 112
Query: 296 LHPGEISYAKYYSRHLIHEADDNRDGNLTLDEML 329
L GE +I EAD + DG + DE +
Sbjct: 113 L--GE-KLTDEEVDEMIREADVDGDGQINYDEFV 143
>pdb|1AHR|A Chain A, Calmodulin Mutant With A Two Residue Deletion In The
Central Helix
Length = 146
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 19/140 (13%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 16 FSLFDKDG-DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 74
Query: 169 QDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLE 228
+ + +E F D D NG ++ E + + T + L E+++
Sbjct: 75 K-------MKDSEEEIREAFRVFDKDGNGFISAAELRHVM-------TNLGEKLTDEEVD 120
Query: 229 RM----DDDNDGKLNLDEFL 244
M D D DG++N +EF+
Sbjct: 121 EMIREADIDGDGQVNYEEFV 140
>pdb|1XFU|O Chain O, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|P Chain P, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|R Chain R, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|S Chain S, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|T Chain T, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFV|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFW|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFY|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFZ|O Chain O, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|P Chain P, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|R Chain R, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|S Chain S, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|T Chain T, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
Length = 149
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 25/145 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 17 FSLFDKDG-DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 75
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 76 KMKDTDSEEE---------IREAFRVFDKDGNGYISAAELRHVM-------TNLGEKLTD 119
Query: 225 EKLERM----DDDNDGKLNLDEFLE 245
E++++M D D DG++N +EF++
Sbjct: 120 EEVDQMIREADIDGDGQVNYEEFVQ 144
>pdb|1OMD|A Chain A, Structure Of Oncomodulin Refined At 1.85 Angstroms
Resolution. An Example Of Extensive Molecular
Aggregation Via Ca2+
pdb|1RRO|A Chain A, Refinement Of Recombinant Oncomodulin At 1.30 Angstroms
Resolution
pdb|2NLN|A Chain A, Solution Structure Of Calcium-Free Rat Beta-Parvalbumin
Length = 108
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%)
Query: 172 EKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMD 231
+ +G+ A K+ F D D +G L+ DE FL S+ + + ++ D
Sbjct: 31 QTSGLSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAAD 90
Query: 232 DDNDGKLNLDEFLENTY 248
+D DGK+ DEF E +
Sbjct: 91 NDGDGKIGADEFQEMVH 107
>pdb|1Y6W|A Chain A, Trapped Intermediate Of Calmodulin
Length = 148
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 9/137 (6%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I+F E+L ++
Sbjct: 16 FSLFDKDG-DGTITTKELGTVXRSLGCNPTEAELQDXINEVDADGNGTINFPEFLTXXAR 74
Query: 169 QDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLE 228
+ + +E F D D NG ++ E H + + + E +
Sbjct: 75 CXKDTDSEEE-----IREAFRVFDKDGNGYISAAELR---HVXTNLGEKLTDEEVDEXIR 126
Query: 229 RMDDDNDGKLNLDEFLE 245
D D DG++N +EF++
Sbjct: 127 EADIDGDGQVNYEEFVQ 143
>pdb|2NXQ|A Chain A, Crystal Structure Of Calcium Binding Protein 1 From
Entamoeba Histolytica: A Novel Arrangement Of Ef Hand
Motifs
pdb|2NXQ|B Chain B, Crystal Structure Of Calcium Binding Protein 1 From
Entamoeba Histolytica: A Novel Arrangement Of Ef Hand
Motifs
pdb|3PX1|A Chain A, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Strontium
pdb|3PX1|B Chain B, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Strontium
pdb|3QJK|A Chain A, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Lead
pdb|3QJK|B Chain B, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Lead
pdb|3ULG|A Chain A, Crystal Structure Of Calcium-Binding Protein-1 From
Entamoeba Histolytica In Complex With Barium
pdb|3ULG|B Chain B, Crystal Structure Of Calcium-Binding Protein-1 From
Entamoeba Histolytica In Complex With Barium
Length = 134
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 150 DRDGDGEISFYEYLPQFSKQDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLH 209
D +GDG +S+ E SK+ KN + + F + D D NG ++ +EF F
Sbjct: 10 DVNGDGAVSYEEVKAFVSKKRAIKNEQL------LQLIFKSIDADGNGEIDQNEFAKFYG 63
Query: 210 PEDSNNTAIQRWLLREKLERMDDDNDGKLNLDE 242
+ + + L+ + MD D DGKL +E
Sbjct: 64 SIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEE 96
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 16/99 (16%)
Query: 150 DRDGDGEI---SFYEYLPQFSKQDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYN 206
D DG+GEI F ++ QD+ + + K + DVD +G L +E +
Sbjct: 46 DADGNGEIDQNEFAKFYGSIQGQDLSDDKI------GLKVLYKLMDVDGDGKLTKEEVTS 99
Query: 207 FLHPEDSNNTAIQRWLLREKLERMDDDNDGKLNLDEFLE 245
F A E++ + D + DG + L+EFLE
Sbjct: 100 FFKKHGIEKVA-------EQVMKADANGDGYITLEEFLE 131
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 19/143 (13%)
Query: 188 FDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQ-RWLLREKLERMDDDNDGKLNLDEFLEN 246
F DV+ +G ++++E F+ S AI+ LL+ + +D D +G+++ +EF
Sbjct: 6 FKEIDVNGDGAVSYEEVKAFV----SKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFA-- 59
Query: 247 TYRTYKSYAEFEDDGDGTDFPSAEETFVELDTNKDKLLEVEELKPIFSYLHPGEISYAKY 306
K Y + D + + +D + D L EE+ F +++
Sbjct: 60 -----KFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHGIEKVA---- 110
Query: 307 YSRHLIHEADDNRDGNLTLDEML 329
+ +AD N DG +TL+E L
Sbjct: 111 ---EQVMKADANGDGYITLEEFL 130
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
Query: 147 ELSDRDGDGEISFYEYLPQFSKQDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYN 206
+L D DGDG+++ E F K IEK EQ AD + +G + +EF
Sbjct: 82 KLMDVDGDGKLTKEEVTSFFKKHGIEK----------VAEQVMKADANGDGYITLEEFLE 131
Query: 207 F 207
F
Sbjct: 132 F 132
>pdb|1K93|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
Length = 144
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 12 FSLFDKDG-DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 70
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 71 KMKDTDSEEE---------IREAFRVFDKDGNGYISAAELRHVM-------TNLGEKLTD 114
Query: 225 EKLERM----DDDNDGKLNLDEFLE 245
E+++ M D D DG++N +EF++
Sbjct: 115 EEVDEMIREADIDGDGQVNYEEFVQ 139
>pdb|1Y0V|H Chain H, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|I Chain I, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|J Chain J, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|K Chain K, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|L Chain L, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|M Chain M, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
Length = 146
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 14 FSLFDKDG-DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 72
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 73 KMKDTDSEEE---------IREAFRVFDKDGNGYISAAELRHVM-------TNLGEKLTD 116
Query: 225 EKLERM----DDDNDGKLNLDEFLE 245
E+++ M D D DG++N +EF++
Sbjct: 117 EEVDEMIREADIDGDGQVNYEEFVQ 141
>pdb|1JFJ|A Chain A, Nmr Solution Structure Of An Ef-Hand Calcium Binding
Protein From Entamoeba Histolytica
pdb|1JFK|A Chain A, Minimum Energy Representative Structure Of A Calcium Bound
Ef-hand Protein From Entamoeba Histolytica
Length = 134
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 150 DRDGDGEISFYEYLPQFSKQDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLH 209
D +GDG +S+ E SK+ KN + + F + D D NG ++ +EF F
Sbjct: 10 DVNGDGAVSYEEVKAFVSKKRAIKNEQL------LQLIFKSIDADGNGEIDQNEFAKFYG 63
Query: 210 PEDSNNTAIQRWLLREKLERMDDDNDGKLNLDE 242
+ + + L+ + MD D DGKL +E
Sbjct: 64 SIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEE 96
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 16/99 (16%)
Query: 150 DRDGDGEI---SFYEYLPQFSKQDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYN 206
D DG+GEI F ++ QD+ + + K + DVD +G L +E +
Sbjct: 46 DADGNGEIDQNEFAKFYGSIQGQDLSDDKI------GLKVLYKLMDVDGDGKLTKEEVTS 99
Query: 207 FLHPEDSNNTAIQRWLLREKLERMDDDNDGKLNLDEFLE 245
F A E++ + D + DG + L+EFLE
Sbjct: 100 FFKKHGIEKVA-------EQVMKADANGDGYITLEEFLE 131
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 19/143 (13%)
Query: 188 FDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQ-RWLLREKLERMDDDNDGKLNLDEFLEN 246
F DV+ +G ++++E F+ S AI+ LL+ + +D D +G+++ +EF
Sbjct: 6 FKEIDVNGDGAVSYEEVKAFV----SKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFA-- 59
Query: 247 TYRTYKSYAEFEDDGDGTDFPSAEETFVELDTNKDKLLEVEELKPIFSYLHPGEISYAKY 306
K Y + D + + +D + D L EE+ F +++
Sbjct: 60 -----KFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHGIEKVA---- 110
Query: 307 YSRHLIHEADDNRDGNLTLDEML 329
+ +AD N DG +TL+E L
Sbjct: 111 ---EQVMKADANGDGYITLEEFL 130
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
Query: 147 ELSDRDGDGEISFYEYLPQFSKQDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYN 206
+L D DGDG+++ E F K IEK EQ AD + +G + +EF
Sbjct: 82 KLMDVDGDGKLTKEEVTSFFKKHGIEK----------VAEQVMKADANGDGYITLEEFLE 131
Query: 207 F 207
F
Sbjct: 132 F 132
>pdb|2F2O|A Chain A, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2O|B Chain B, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2P|A Chain A, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2P|B Chain B, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
Length = 179
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 17 FSLFDKDG-DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 75
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 76 KMKDTDSEEE---------IREAFRVFDKDGNGYISAAELRHVM-------TNLGEKLTD 119
Query: 225 EKLERM----DDDNDGKLNLDEFLE 245
E+++ M D D DG++N +EF++
Sbjct: 120 EEVDEMIREADIDGDGQVNYEEFVQ 144
>pdb|1PRW|A Chain A, Crystal Structure Of Bovine Brain Ca++ Calmodulin In A
Compact Form
Length = 149
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 17 FSLFDKDG-DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 75
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 76 KMKDTDSEEE---------IREAFRVFDKDGNGYISAAELRHVM-------TNLGEXLTD 119
Query: 225 EKLERM----DDDNDGKLNLDEFLE 245
E+++ M D D DG++N +EF++
Sbjct: 120 EEVDEMIREADIDGDGQVNYEEFVQ 144
>pdb|1UP5|A Chain A, Chicken Calmodulin
pdb|1UP5|B Chain B, Chicken Calmodulin
Length = 148
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 16 FSLFDKDG-DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 74
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 75 KMKDTDSEEE---------IREAFRVFDKDGNGYISAAELRHVM-------TNLGEXLTD 118
Query: 225 EKLERM----DDDNDGKLNLDEFLE 245
E+++ M D D DG++N +EF++
Sbjct: 119 EEVDEMIREADIDGDGQVNYEEFVQ 143
>pdb|1CDM|A Chain A, Modulation Of Calmodulin Plasticity In Molecular
Recognition On The Basis Of X-Ray Structures
Length = 144
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 13 FSLFDKDG-DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 71
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 72 KMKDTDSEEE---------IREAFRVFDKDGNGYISAAELRHVM-------TNLGEKLTD 115
Query: 225 EKLERM----DDDNDGKLNLDEFLE 245
E+++ M D D DG++N +EF++
Sbjct: 116 EEVDEMIREADIDGDGQVNYEEFVQ 140
>pdb|2L1W|A Chain A, The Solution Structure Of Soybean Calmodulin Isoform 4
Complexed With The Vacuolar Calcium Atpase Bca1 Peptide
Length = 149
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 25/144 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG +++ EL L + Q I D DG+G I F E+L +K
Sbjct: 16 FGLFDKDG-DGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTIEFDEFLSLMAK 74
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ KE F D D NG ++ E + + + L
Sbjct: 75 KVKDTDAEEE---------LKEAFKVFDKDQNGYISASELRHVM-------INLGEKLTD 118
Query: 225 EKLERM----DDDNDGKLNLDEFL 244
E++E+M D D DG++N +EF+
Sbjct: 119 EEVEQMIKEADLDGDGQVNYEEFV 142
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 15/146 (10%)
Query: 184 WKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMDDDNDGKLNLDEF 243
+KE F D D +G + +E + D N T + L++ + +D D +G + DEF
Sbjct: 12 FKEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEE---LQDMISEVDADGNGTIEFDEF 68
Query: 244 LENTYRTYKSYAEFEDDGDGTDFPSAEETFVELDTNKDKLLEVEELKPIFSYLHPGEISY 303
L + K D D + +E F D +++ + EL+ + ++ GE
Sbjct: 69 LSLMAKKVK-------DTDAEE--ELKEAFKVFDKDQNGYISASELRHVM--INLGE-KL 116
Query: 304 AKYYSRHLIHEADDNRDGNLTLDEML 329
+I EAD + DG + +E +
Sbjct: 117 TDEEVEQMIKEADLDGDGQVNYEEFV 142
>pdb|2YGG|B Chain B, Complex Of Cambr And Cam
Length = 150
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 17 FSLFDKDG-DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 75
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 76 KMKDTDSEEE---------IREAFRVFDKDGNGYISAAELRHVM-------TNLGEKLTD 119
Query: 225 EKLERM----DDDNDGKLNLDEFLE 245
E+++ M D D DG++N +EF++
Sbjct: 120 EEVDEMIREADIDGDGQVNYEEFVQ 144
>pdb|2VAY|A Chain A, Calmodulin Complexed With Cav1.1 Iq Peptide
pdb|2LGF|A Chain A, Solution Structure Of Ca2+CALMODULIN COMPLEXED WITH A
PEPTIDE Representing The Calmodulin-Binding Domain Of
L-Selectin
Length = 146
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 14 FSLFDKDG-DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 72
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 73 KMKDTDSEEE---------IREAFRVFDKDGNGYISAAELRHVM-------TNLGEKLTD 116
Query: 225 EKLERM----DDDNDGKLNLDEFLE 245
E+++ M D D DG++N +EF++
Sbjct: 117 EEVDEMIREADIDGDGQVNYEEFVQ 141
>pdb|2WEL|D Chain D, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 150
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 18 FSLFDKDG-DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 76
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 77 KMKDTDSEEE---------IREAFRVFDKDGNGYISAAELRHVM-------TNLGEKLTD 120
Query: 225 EKLERM----DDDNDGKLNLDEFLE 245
E+++ M D D DG++N +EF++
Sbjct: 121 EEVDEMIREADIDGDGQVNYEEFVQ 145
>pdb|1IQ5|A Chain A, CalmodulinNEMATODE CA2+CALMODULIN DEPENDENT KINASE KINASE
Fragment
pdb|1LVC|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|2BKI|B Chain B, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
pdb|2BKI|D Chain D, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
pdb|1WRZ|A Chain A, Calmodulin Complexed With A Peptide From A Human
Death-Associated Protein Kinase
pdb|2V01|A Chain A, Recombinant Vertebrate Calmodulin Complexed With Pb
pdb|2V02|A Chain A, Recombinant Vertebrate Calmodulin Complexed With Ba
pdb|2R28|A Chain A, The Complex Structure Of Calmodulin Bound To A Calcineurin
Peptide
pdb|2R28|B Chain B, The Complex Structure Of Calmodulin Bound To A Calcineurin
Peptide
pdb|2W73|A Chain A, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|B Chain B, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|E Chain E, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|F Chain F, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|3HR4|B Chain B, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|D Chain D, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|F Chain F, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|H Chain H, Human Inos Reductase And Calmodulin Complex
pdb|3OXQ|A Chain A, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|B Chain B, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|C Chain C, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|D Chain D, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|2Y4V|A Chain A, Crystal Structure Of Human Calmodulin In Complex With A
Dap Kinase-1 Mutant (W305y) Peptide
pdb|3SJQ|A Chain A, Crystal Structure Of A Small Conductance Potassium Channel
Splice Variant Complexed With Calcium-Calmodulin
pdb|3SJQ|B Chain B, Crystal Structure Of A Small Conductance Potassium Channel
Splice Variant Complexed With Calcium-Calmodulin
pdb|4DCK|B Chain B, Crystal Structure Of The C-Terminus Of Voltage-Gated
Sodium Channel In Complex With Fgf13 And Cam
pdb|3SUI|A Chain A, Crystal Structure Of Ca2+-Calmodulin In Complex With A
Trpv1 C- Terminal Peptide
pdb|4G27|R Chain R, Calcium-Calmodulin Complexed With The Calmodulin Binding
Domain From A Small Conductance Potassium Channel Splice
Variant And Phenylurea
pdb|4G28|R Chain R, Calcium-Calmodulin Complexed With The Calmodulin Binding
Domain From A Small Conductance Potassium Channel Splice
Variant And Ebio-1
Length = 149
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 17 FSLFDKDG-DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 75
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 76 KMKDTDSEEE---------IREAFRVFDKDGNGYISAAELRHVM-------TNLGEKLTD 119
Query: 225 EKLERM----DDDNDGKLNLDEFLE 245
E+++ M D D DG++N +EF++
Sbjct: 120 EEVDEMIREADIDGDGQVNYEEFVQ 144
>pdb|3EWT|A Chain A, Crystal Structure Of Calmodulin Complexed With A Peptide
pdb|3EWV|A Chain A, Crystal Structure Of Calmodulin Complexed With A Peptide
Length = 154
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 22 FSLFDKDG-DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 80
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 81 KMKDTDSEEE---------IREAFRVFDKDGNGYISAAELRHVM-------TNLGEKLTD 124
Query: 225 EKLERM----DDDNDGKLNLDEFLE 245
E+++ M D D DG++N +EF++
Sbjct: 125 EEVDEMIREADIDGDGQVNYEEFVQ 149
>pdb|1CM1|A Chain A, Motions Of Calmodulin-Single-Conformer Refinement
pdb|1CM4|A Chain A, Motions Of Calmodulin-four-conformer Refinement
pdb|1CKK|A Chain A, CalmodulinRAT CA2+CALMODULIN DEPENDENT PROTEIN KINASE
Fragment
pdb|1CFF|A Chain A, Nmr Solution Structure Of A Complex Of Calmodulin With A
Binding Peptide Of The Ca2+-Pump
pdb|1QIV|A Chain A, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd), 1:2
Complex
pdb|1QIW|A Chain A, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd)
pdb|1QIW|B Chain B, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd)
pdb|1G4Y|R Chain R, 1.60 A Crystal Structure Of The Gating Domain From Small
Conductance Potassium Channel Complexed With
Calcium-Calmodulin
pdb|1K90|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K90|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K90|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1IWQ|A Chain A, Crystal Structure Of Marcks Calmodulin Binding Domain
Peptide Complexed With Ca2+CALMODULIN
pdb|1NWD|A Chain A, Solution Structure Of Ca2+CALMODULIN BOUND TO THE C-
Terminal Domain Of Petunia Glutamate Decarboxylase
pdb|1L7Z|A Chain A, Crystal Structure Of Ca2+/calmodulin Complexed With
Myristoylated Cap-23/nap-22 Peptide
pdb|1S26|D Chain D, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|E Chain E, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|F Chain F, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1SK6|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1QX5|D Chain D, Crystal Structure Of Apocalmodulin
pdb|1QX5|I Chain I, Crystal Structure Of Apocalmodulin
pdb|1QX5|B Chain B, Crystal Structure Of Apocalmodulin
pdb|1QX5|J Chain J, Crystal Structure Of Apocalmodulin
pdb|1QX5|K Chain K, Crystal Structure Of Apocalmodulin
pdb|1QX5|T Chain T, Crystal Structure Of Apocalmodulin
pdb|1QX5|R Chain R, Crystal Structure Of Apocalmodulin
pdb|1QX5|Y Chain Y, Crystal Structure Of Apocalmodulin
pdb|1XA5|A Chain A, Structure Of Calmodulin In Complex With Kar-2, A Bis-Indol
Alkaloid
pdb|1SY9|A Chain A, Structure Of Calmodulin Complexed With A Fragment Of The
Olfactory Cng Channel
pdb|2F3Y|A Chain A, CalmodulinIQ DOMAIN COMPLEX
pdb|2F3Z|A Chain A, CalmodulinIQ-Aa Domain Complex
pdb|1X02|A Chain A, Solution Structure Of Stereo Array Isotope Labeled (Sail)
Calmodulin
pdb|2DFS|B Chain B, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|C Chain C, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|D Chain D, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|E Chain E, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|F Chain F, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|G Chain G, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|N Chain N, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|O Chain O, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|P Chain P, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|Q Chain Q, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|R Chain R, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|S Chain S, 3-D Structure Of Myosin-V Inhibited State
pdb|1YR5|A Chain A, 1.7-A Structure Of Calmodulin Bound To A Peptide From Dap
Kinase
pdb|2FOT|A Chain A, Crystal Structure Of The Complex Between Calmodulin And
Alphaii-Spectrin
pdb|2BCX|A Chain A, Crystal Structure Of Calmodulin In Complex With A
Ryanodine Receptor Peptide
pdb|1A29|A Chain A, Calmodulin Complexed With Trifluoperazine (1:2 Complex)
pdb|1CFC|A Chain A, Calcium-Free Calmodulin
pdb|1CFD|A Chain A, Calcium-Free Calmodulin
pdb|1CLL|A Chain A, Calmodulin Structure Refined At 1.7 Angstroms Resolution
pdb|1CTR|A Chain A, Drug Binding By Calmodulin: Crystal Structure Of A
Calmodulin-Trifluoperazine Complex
pdb|1LIN|A Chain A, Calmodulin Complexed With Trifluoperazine (1:4 Complex)
pdb|1MUX|A Chain A, Solution Nmr Structure Of CalmodulinW-7 Complex: The Basis
Of Diversity In Molecular Recognition, 30 Structures
pdb|2HQW|A Chain A, Crystal Structure Of Ca2+CALMODULIN BOUND TO NMDA RECEPTOR
NR1C1 Peptide
pdb|2O5G|A Chain A, Calmodulin-Smooth Muscle Light Chain Kinase Peptide
Complex
pdb|2O60|A Chain A, Calmodulin Bound To Peptide From Neuronal Nitric Oxide
Synthase
pdb|3BXK|A Chain A, Crystal Structure Of The PQ-Type Calcium Channel (Cav2.1)
Iq Domain And Ca2+calmodulin Complex
pdb|3BXK|C Chain C, Crystal Structure Of The PQ-Type Calcium Channel (Cav2.1)
Iq Domain And Ca2+calmodulin Complex
pdb|3BXL|A Chain A, Crystal Structure Of The R-Type Calcium Channel (Cav2.3)
Iq Domain And Ca2+calmodulin Complex
pdb|2K0E|A Chain A, A Coupled Equilibrium Shift Mechanism In Calmodulin-
Mediated Signal Transduction
pdb|2K0F|A Chain A, Calmodulin Complexed With Calmodulin-Binding Peptide From
Smooth Muscle Myosin Light Chain Kinase
pdb|3DVE|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.2 Iq Domain Complex
pdb|3DVJ|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.2 Iq Domain (Without
Cloning Artifact, Hm To Tv) Complex
pdb|3DVK|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.3 Iq Domain Complex
pdb|3DVM|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.1 Iq Domain Complex
pdb|2JZI|A Chain A, Structure Of Calmodulin Complexed With The Calmodulin
Binding Domain Of Calcineurin
pdb|3BYA|A Chain A, Structure Of A Calmodulin Complex
pdb|3G43|A Chain A, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|B Chain B, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|C Chain C, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|D Chain D, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|2KNE|A Chain A, Calmodulin Wraps Around Its Binding Domain In The Plasma
Membrane Ca2+ Pump Anchored By A Novel 18-1 Motif
pdb|2KDU|A Chain A, Structural Basis Of The Munc13-1CA2+-Calmodulin
Interaction: A Novel 1-26 Calmodulin Binding Motif With
A Bipartite Binding Mode
pdb|2X0G|B Chain B, X-ray Structure Of A Dap-kinase Calmodulin Complex
pdb|3GOF|A Chain A, Calmodulin Bound To Peptide From Macrophage Nitric Oxide
Synthase
pdb|3GOF|B Chain B, Calmodulin Bound To Peptide From Macrophage Nitric Oxide
Synthase
pdb|3IF7|A Chain A, Structure Of Calmodulin Complexed With Its First
Endogenous Inhibitor, Sphingosylphosphorylcholine
pdb|2L53|A Chain A, Solution Nmr Structure Of Apo-Calmodulin In Complex With
The Iq Motif Of Human Cardiac Sodium Channel Nav1.5
pdb|2L7L|A Chain A, Solution Structure Of Ca2+CALMODULIN COMPLEXED WITH A
PEPTIDE Representing The Calmodulin-Binding Domain Of
Calmodulin Kinase I
pdb|2LL6|A Chain A, Solution Nmr Structure Of Cam Bound To Inos Cam Binding
Domain Peptide
pdb|2LL7|A Chain A, Solution Nmr Structure Of Cam Bound To The Enos Cam
Binding Domain Peptide
pdb|4EHQ|A Chain A, Crystal Structure Of Calmodulin Binding Domain Of Orai1 In
Complex With Ca2+CALMODULIN DISPLAYS A UNIQUE BINDING
MODE
Length = 148
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 16 FSLFDKDG-DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 74
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 75 KMKDTDSEEE---------IREAFRVFDKDGNGYISAAELRHVM-------TNLGEKLTD 118
Query: 225 EKLERM----DDDNDGKLNLDEFLE 245
E+++ M D D DG++N +EF++
Sbjct: 119 EEVDEMIREADIDGDGQVNYEEFVQ 143
>pdb|2BE6|A Chain A, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|2BE6|B Chain B, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|2BE6|C Chain C, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|1ZUZ|A Chain A, Calmodulin In Complex With A Mutant Peptide From Human
Drp-1 Kinase
Length = 150
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 17 FSLFDKDG-DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 75
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 76 KMKDTDSEEE---------IREAFRVFDKDGNGYISAAELRHVM-------TNLGEKLTD 119
Query: 225 EKLERM----DDDNDGKLNLDEFLE 245
E+++ M D D DG++N +EF++
Sbjct: 120 EEVDEMIREADIDGDGQVNYEEFVQ 144
>pdb|1CDL|A Chain A, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|B Chain B, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|C Chain C, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|D Chain D, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1PK0|D Chain D, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|E Chain E, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|F Chain F, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|3GP2|A Chain A, Calmodulin Bound To Peptide From Calmodulin Kinase Ii
(Camkii)
Length = 147
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 16 FSLFDKDG-DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 74
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 75 KMKDTDSEEE---------IREAFRVFDKDGNGYISAAELRHVM-------TNLGEKLTD 118
Query: 225 EKLERM----DDDNDGKLNLDEFLE 245
E+++ M D D DG++N +EF++
Sbjct: 119 EEVDEMIREADIDGDGQVNYEEFVQ 143
>pdb|4DJC|A Chain A, 1.35 A Crystal Structure Of The Nav1.5 Diii-Iv-CaCAM
COMPLEX
Length = 152
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 20 FSLFDKDG-DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 78
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 79 KMKDTDSEEE---------IREAFRVFDKDGNGYISAAELRHVM-------TNLGEKLTD 122
Query: 225 EKLERM----DDDNDGKLNLDEFLE 245
E+++ M D D DG++N +EF++
Sbjct: 123 EEVDEMIREADIDGDGQVNYEEFVQ 147
>pdb|4GOW|D Chain D, Crystal Structure Of Ca2+CAM:KV7.4 (KCNQ4) B HELIX COMPLEX
Length = 144
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 14 FSLFDKDG-DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 72
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 73 KMKDTDSEEE---------IREAFRVFDKDGNGYISAAELRHVM-------TNLGEKLTD 116
Query: 225 EKLERM----DDDNDGKLNLDEFLE 245
E+++ M D D DG++N +EF++
Sbjct: 117 EEVDEMIREADIDGDGQVNYEEFVQ 141
>pdb|2IX7|A Chain A, Structure Of Apo-Calmodulin Bound To Unconventional Myosin
V
pdb|2IX7|B Chain B, Structure Of Apo-Calmodulin Bound To Unconventional Myosin
V
Length = 145
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 15 FSLFDKDG-DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 73
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 74 KMKDTDSEEE---------IREAFRVFDKDGNGYISAAELRHVM-------TNLGEKLTD 117
Query: 225 EKLERM----DDDNDGKLNLDEFLE 245
E+++ M D D DG++N +EF++
Sbjct: 118 EEVDEMIREADIDGDGQVNYEEFVQ 142
>pdb|2LV6|A Chain A, The Complex Between Ca-calmodulin And Skeletal Muscle
Myosin Light Chain Kinase From Combination Of Nmr And
Aqueous And Contrast-matched Saxs Data
Length = 148
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 27/152 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 16 FSLFDKDG-DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 74
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 75 KMKDTDSEEE---------IREAFRVFDKDGNGFISAAELRHVM-------TNLGEKLTD 118
Query: 225 EKLERM----DDDNDGKLNLDEFLENTYRTYK 252
E+++ M D D DG++N +EF+ T T K
Sbjct: 119 EEVDEMIREADIDGDGQVNYEEFV--TMMTAK 148
>pdb|2GGM|A Chain A, Human Centrin 2 Xeroderma Pigmentosum Group C Protein
Complex
pdb|2GGM|B Chain B, Human Centrin 2 Xeroderma Pigmentosum Group C Protein
Complex
Length = 172
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 105 LIYLFPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYL 163
++ F L D++ + G +S L EL + Q+ I+ +DRDGDGE+S E+L
Sbjct: 106 ILKAFKLFDDD-ETGKISFKNLKRVAKELGENLTDEELQEXIDEADRDGDGEVSEQEFL 163
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 131 VELAVDRLSYTTQKQIE----LSDRDGDGEISFYEYLPQFSKQDIEKNGMVHGQAGWWKE 186
V +A+DR + +++++E + D D G+IS E F D++ WK
Sbjct: 428 VTVAMDRKTLLSRERLERAFRMFDSDNSGKISSTELATIFGVSDVDSE--------TWKS 479
Query: 187 QFDNADVDSNGTLNFDEFYNFL 208
D +++G ++FDEF L
Sbjct: 480 VLSEVDKNNDGEVDFDEFQQML 501
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 62/151 (41%), Gaps = 32/151 (21%)
Query: 150 DRDGDGE------ISFYEYLPQFSKQDIEKNGMVHGQAGWWK--EQFDNADVDSNGTLNF 201
D++GDG+ I Y+ L + QD M+ A + + D D D NG + +
Sbjct: 368 DKNGDGQLDRAELIEGYKELMRMKGQDAS---MLDASAVEHEVDQVLDAVDFDKNGYIEY 424
Query: 202 DEFYNFLHPEDSNNTAIQRWLLREKLER----MDDDNDGKLNLDEFL---------ENTY 248
EF + L RE+LER D DN GK++ E T+
Sbjct: 425 SEFVTVAMDRKT-------LLSRERLERAFRMFDSDNSGKISSTELATIFGVSDVDSETW 477
Query: 249 RTYKSYAEFEDDGDGTDFPSAEETFVELDTN 279
++ S + +DG+ DF ++ ++L N
Sbjct: 478 KSVLSEVDKNNDGE-VDFDEFQQMLLKLCGN 507
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 131 VELAVDRLSYTTQKQIE----LSDRDGDGEISFYEYLPQFSKQDIEKNGMVHGQAGWWKE 186
V +A+DR + +++++E + D D G+IS E F D++ WK
Sbjct: 429 VTVAMDRKTLLSRERLERAFRMFDSDNSGKISSTELATIFGVSDVDSE--------TWKS 480
Query: 187 QFDNADVDSNGTLNFDEFYNFL 208
D +++G ++FDEF L
Sbjct: 481 VLSEVDKNNDGEVDFDEFQQML 502
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 62/151 (41%), Gaps = 32/151 (21%)
Query: 150 DRDGDGE------ISFYEYLPQFSKQDIEKNGMVHGQAGWWK--EQFDNADVDSNGTLNF 201
D++GDG+ I Y+ L + QD M+ A + + D D D NG + +
Sbjct: 369 DKNGDGQLDRAELIEGYKELMRMKGQDAS---MLDASAVEHEVDQVLDAVDFDKNGYIEY 425
Query: 202 DEFYNFLHPEDSNNTAIQRWLLREKLER----MDDDNDGKLNLDEFL---------ENTY 248
EF + L RE+LER D DN GK++ E T+
Sbjct: 426 SEFVTVAMDRKT-------LLSRERLERAFRMFDSDNSGKISSTELATIFGVSDVDSETW 478
Query: 249 RTYKSYAEFEDDGDGTDFPSAEETFVELDTN 279
++ S + +DG+ DF ++ ++L N
Sbjct: 479 KSVLSEVDKNNDGE-VDFDEFQQMLLKLCGN 508
>pdb|2VB6|B Chain B, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 149
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 25/144 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 17 FSLFDKDG-DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 75
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 76 KMKDTDSEEE---------IREAFRVFDKDGNGFISAAELRHVM-------TNLGEKLTD 119
Query: 225 EKLERM----DDDNDGKLNLDEFL 244
E+++ M D D DG++N +EF+
Sbjct: 120 EEVDEMIRESDIDGDGQVNYEEFV 143
>pdb|2BKH|B Chain B, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
pdb|2VAS|B Chain B, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|3GN4|B Chain B, Myosin Lever Arm
pdb|3GN4|D Chain D, Myosin Lever Arm
pdb|3GN4|F Chain F, Myosin Lever Arm
pdb|3GN4|H Chain H, Myosin Lever Arm
pdb|3L9I|C Chain C, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
pdb|2X51|B Chain B, M6 Delta Insert1
pdb|4ANJ|B Chain B, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
pdb|4DBP|C Chain C, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
pdb|4DBQ|B Chain B, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 149
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 25/144 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 17 FSLFDKDG-DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 75
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 76 KMKDTDSEEE---------IREAFRVFDKDGNGFISAAELRHVM-------TNLGEKLTD 119
Query: 225 EKLERM----DDDNDGKLNLDEFL 244
E+++ M D D DG++N +EF+
Sbjct: 120 EEVDEMIREADIDGDGQVNYEEFV 143
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor
Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 131 VELAVDRLSYTTQKQIE----LSDRDGDGEISFYEYLPQFSKQDIEKNGMVHGQAGWWKE 186
V +A+DR + +++++E + D D G+IS E F D++ WK
Sbjct: 405 VTVAMDRKTLLSRERLERAFRMFDSDNSGKISSTELATIFGVSDVDSET--------WKS 456
Query: 187 QFDNADVDSNGTLNFDEFYNFL 208
D +++G ++FDEF L
Sbjct: 457 VLSEVDKNNDGEVDFDEFQQML 478
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 64/153 (41%), Gaps = 36/153 (23%)
Query: 150 DRDGDGE------ISFYEYLPQFSKQDIEKNGMVHGQAGWWK--EQFDNADVDSNGTLNF 201
D++GDG+ I Y+ L + QD M+ A + + D D D NG + +
Sbjct: 345 DKNGDGQLDRAELIEGYKELMRMKGQD---ASMLDASAVEHEVDQVLDAVDFDKNGYIEY 401
Query: 202 DEFYNFLHPEDSNNTAIQR--WLLREKLER----MDDDNDGKLNLDEFL---------EN 246
EF A+ R L RE+LER D DN GK++ E
Sbjct: 402 SEFVT---------VAMDRKTLLSRERLERAFRMFDSDNSGKISSTELATIFGVSDVDSE 452
Query: 247 TYRTYKSYAEFEDDGDGTDFPSAEETFVELDTN 279
T+++ S + +DG+ DF ++ ++L N
Sbjct: 453 TWKSVLSEVDKNNDGE-VDFDEFQQMLLKLCGN 484
>pdb|2BBM|A Chain A, Solution Structure Of A Calmodulin-Target Peptide Complex
By Multidimensional Nmr
pdb|2BBN|A Chain A, Solution Structure Of A Calmodulin-Target Peptide Complex
By Multidimensional Nmr
pdb|1MXE|A Chain A, Structure Of The Complex Of Calmodulin With The Target
Sequence Of Camki
pdb|1MXE|B Chain B, Structure Of The Complex Of Calmodulin With The Target
Sequence Of Camki
pdb|4CLN|A Chain A, Structure Of A Recombinant Calmodulin From Drosophila
Melanogaster Refined At 2.2-Angstroms Resolution
Length = 148
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 25/144 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 16 FSLFDKDG-DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 74
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 75 KMKDTDSEEE---------IREAFRVFDKDGNGFISAAELRHVM-------TNLGEKLTD 118
Query: 225 EKLERM----DDDNDGKLNLDEFL 244
E+++ M D D DG++N +EF+
Sbjct: 119 EEVDEMIREADIDGDGQVNYEEFV 142
>pdb|1VRK|A Chain A, The 1.9 Angstrom Structure Of E84k-Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 16 FSLFDKDG-DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAR 74
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ KE F D D NG ++ E + + T + L
Sbjct: 75 KMKDTDSEEK---------LKEAFRVFDKDGNGFISAAELRHVM-------TNLGEKLTD 118
Query: 225 EKLERM----DDDNDGKLNLDEFLE 245
E+++ M D D DG++N +EF++
Sbjct: 119 EEVDEMIREADVDGDGQVNYEEFVQ 143
>pdb|1OOJ|A Chain A, Structural Genomics Of Caenorhabditis Elegans : Calmodulin
Length = 149
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 25/144 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 17 FSLFDKDG-DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 75
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 76 KMKDTDSEEE---------IREAFRVFDKDGNGFISAAELRHVM-------TNLGEKLTD 119
Query: 225 EKLERM----DDDNDGKLNLDEFL 244
E+++ M D D DG++N +EF+
Sbjct: 120 EEVDEMIREADIDGDGQVNYEEFV 143
>pdb|2OBH|A Chain A, Centrin-Xpc Peptide
pdb|2OBH|B Chain B, Centrin-Xpc Peptide
Length = 143
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 105 LIYLFPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLP 164
++ F L D++ G +S L EL + Q+ I+ +DRDGDGE+S E+L
Sbjct: 81 ILKAFKLFDDDET-GKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLR 139
Query: 165 QFSK 168
K
Sbjct: 140 IMKK 143
>pdb|1QS7|A Chain A, The 1.8 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
pdb|1QS7|C Chain C, The 1.8 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
Length = 145
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 13 FSLFDKDG-DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAR 71
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ KE F D D NG ++ E + + T + L
Sbjct: 72 KMKDTDSEEE---------LKEAFRVFDKDGNGFISAAELRHVM-------TNLGEKLTD 115
Query: 225 EKLERM----DDDNDGKLNLDEFLE 245
E+++ M D D DG++N +EF++
Sbjct: 116 EEVDEMIREADVDGDGQVNYEEFVQ 140
>pdb|2A4J|A Chain A, Solution Structure Of The C-Terminal Domain (T94-Y172) Of
The Human Centrin 2 In Complex With A 17 Residues
Peptide (P1-Xpc) From Xeroderma Pigmentosum Group C
Protein
pdb|2K2I|A Chain A, Nmr Solution Structure Of The C-Terminal Domain (T94-Y172)
Of The Human Centrin 2 In Complex With A Repeat Sequence
Of Human Sfi1 (R641-T660)
Length = 79
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 105 LIYLFPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLP 164
++ F L D++ G +S L EL + Q+ I+ +DRDGDGE+S E+L
Sbjct: 13 ILKAFKLFDDDET-GKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLR 71
Query: 165 QFSK 168
K
Sbjct: 72 IMKK 75
>pdb|1NIW|A Chain A, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|C Chain C, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|E Chain E, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|G Chain G, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1QX7|I Chain I, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|R Chain R, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|A Chain A, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|B Chain B, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|M Chain M, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
Length = 148
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 9/137 (6%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 16 FSLFDKDG-DGTITTKELGTVXRSLGQNPTEAELQDXINEVDADGNGTIDFPEFLTXXAR 74
Query: 169 QDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLE 228
+ + + +E F D D NG ++ E H + + + E +
Sbjct: 75 KXKDTDSEEE-----IREAFRVFDKDGNGYISAAELR---HVXTNLGEKLTDEEVDEXIR 126
Query: 229 RMDDDNDGKLNLDEFLE 245
D D DG++N +EF++
Sbjct: 127 EADIDGDGQVNYEEFVQ 143
>pdb|1QTX|A Chain A, The 1.65 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 16 FSLFDKDG-DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAR 74
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ KE F D D NG ++ E + + T + L
Sbjct: 75 KMKDTDSEEE---------LKEAFRVFDKDGNGFISAAELRHVM-------TNLGEKLTD 118
Query: 225 EKLERM----DDDNDGKLNLDEFLE 245
E+++ M D D DG++N +EF++
Sbjct: 119 EEVDEMIREADVDGDGQVNYEEFVQ 143
>pdb|4AQR|A Chain A, Crystal Structure Of A Calmodulin In Complex With The
Regulatory Domain Of A Plasma-Membrane Ca2+-Atpase
pdb|4AQR|B Chain B, Crystal Structure Of A Calmodulin In Complex With The
Regulatory Domain Of A Plasma-Membrane Ca2+-Atpase
Length = 149
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 17/140 (12%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 17 FSLFDKDG-DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAR 75
Query: 169 QDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLE 228
+ + + KE F D D NG ++ E + + T + L E+++
Sbjct: 76 KMKDTD-----SEEELKEAFRVFDKDQNGFISAAELRHVM-------TNLGEKLTDEEVD 123
Query: 229 RM----DDDNDGKLNLDEFL 244
M D D DG++N +EF+
Sbjct: 124 EMIREADVDGDGQINYEEFV 143
>pdb|1GGZ|A Chain A, Crystal Structure Of The Calmodulin-Like Protein (Hclp)
From Human Epithelial Cells
Length = 148
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 17/140 (12%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + + + DRDG+G + F E+L ++
Sbjct: 16 FSLFDKDG-DGCITTRELGTVMRSLGQNPTEAELRDMMSEIDRDGNGTVDFPEFLGMMAR 74
Query: 169 QDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLE 228
+ + + +E F D D NG ++ E + + T + L E+++
Sbjct: 75 KMKDTD-----NEEEIREAFRVFDKDGNGFVSAAELRHVM-------TRLGEKLSDEEVD 122
Query: 229 RM----DDDNDGKLNLDEFL 244
M D D DG++N +EF+
Sbjct: 123 EMIRAADTDGDGQVNYEEFV 142
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 17/140 (12%)
Query: 180 QAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMDDDNDGKLN 239
Q +KE F D D +G + E + N T + LR+ + +D D +G ++
Sbjct: 8 QVTEFKEAFSLFDKDGDGCITTRELGTVMRSLGQNPTEAE---LRDMMSEIDRDGNGTVD 64
Query: 240 LDEFLENTYRTYK----------SYAEFEDDGDGTDFPSAEETFVELDTNKDKLL--EVE 287
EFL R K ++ F+ DG+G F SA E + +KL EV+
Sbjct: 65 FPEFLGMMARKMKDTDNEEEIREAFRVFDKDGNG--FVSAAELRHVMTRLGEKLSDEEVD 122
Query: 288 ELKPIFSYLHPGEISYAKYY 307
E+ G+++Y ++
Sbjct: 123 EMIRAADTDGDGQVNYEEFV 142
>pdb|1M39|A Chain A, Solution Structure Of The C-Terminal Fragment (F86-I165)
Of The Human Centrin 2 In Calcium Saturated Form
Length = 89
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 105 LIYLFPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLP 164
++ F L D++ G +S L EL + Q+ I+ +DRDGDGE+S E+L
Sbjct: 23 ILKAFKLFDDDET-GKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLR 81
Query: 165 QFSK 168
K
Sbjct: 82 IMKK 85
>pdb|2CT9|A Chain A, The Crystal Structure Of Calcineurin B Homologous Proein 1
(Chp1)
pdb|2CT9|B Chain B, The Crystal Structure Of Calcineurin B Homologous Proein 1
(Chp1)
Length = 208
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 102 TSRLIYLFPLIDNEPKDGVLSLNELDNW-----NVELAVDRLSYTTQKQIELSDRDGDGE 156
+++L + F L D + KD +S +EL V ++ ++L + I+ +D+DGD
Sbjct: 112 SNKLHFAFRLYDLD-KDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSA 170
Query: 157 ISFYEYLPQFSKQDIEK 173
ISF E++ K D+E+
Sbjct: 171 ISFTEFVKVLEKVDVEQ 187
>pdb|2KYC|A Chain A, Solution Structure Of Ca-Free Chicken Parvalbumin 3 (Cpv3)
pdb|2KYF|A Chain A, Solution Structure Of Calcium-Bound Cpv3
Length = 108
Score = 31.6 bits (70), Expect = 0.67, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 34/78 (43%)
Query: 168 KQDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKL 227
K+ + +GM + KE F D D +G + DE FL +S + + L
Sbjct: 27 KKFFQISGMSKKSSSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFL 86
Query: 228 ERMDDDNDGKLNLDEFLE 245
D D DGK+ +EF E
Sbjct: 87 AAADHDGDGKIGAEEFQE 104
>pdb|2E30|A Chain A, Solution Structure Of The Cytoplasmic Region Of Na+H+
Exchanger 1 Complexed With Essential Cofactor
Calcineurin B Homologous Protein 1
Length = 195
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 131 VELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSKQDIEK 173
V ++ ++L + I+ +D+DGD ISF E++ K D+E+
Sbjct: 145 VNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKVDVEQ 187
>pdb|1SW8|A Chain A, Solution Structure Of The N-Terminal Domain Of Human N60d
Calmodulin Refined With Paramagnetism Based Strategy
Length = 79
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 180 QAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMDDDNDGKLN 239
Q +KE F D D +GT+ E + N T + L++ + +D D DG ++
Sbjct: 8 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE---LQDMINEVDADGDGTID 64
Query: 240 LDEFLENTYRTYK 252
EFL R K
Sbjct: 65 FPEFLTMMARKMK 77
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DGDG I F E+L ++
Sbjct: 16 FSLFDKD-GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMAR 74
Query: 169 Q 169
+
Sbjct: 75 K 75
>pdb|1S6I|A Chain A, Ca2+-Regulatory Region (Cld) From Soybean
Calcium-Dependent Protein Kinase-Alpha (Cdpk) In The
Presence Of Ca2+ And The Junction Domain (Jd)
Length = 188
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 180 QAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMDDDNDGKLN 239
+ G KE F D D++GT+ FDE + L S + +++ ++ D D G ++
Sbjct: 8 EIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSE---LMESEIKDLMDAADIDKSGTID 64
Query: 240 LDEFLENTYRTYK---------SYAEFEDDGDG 263
EF+ T K +++ F+ DG G
Sbjct: 65 YGEFIAATVHLNKLEREENLVSAFSYFDKDGSG 97
>pdb|1CLM|A Chain A, Structure Of Paramecium Tetraurelia Calmodulin At 1.8
Angstroms Resolution
Length = 148
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 17/140 (12%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 16 FALFDKDG-DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMAR 74
Query: 169 QDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLE 228
+ E++ E F D D NG ++ E + + T + L ++++
Sbjct: 75 KMKEQD-----SEEELIEAFKVFDRDGNGLISAAELRHVM-------TNLGEKLTDDEVD 122
Query: 229 RM----DDDNDGKLNLDEFL 244
M D D DG +N +EF+
Sbjct: 123 EMIREADIDGDGHINYEEFV 142
>pdb|1EXR|A Chain A, The 1.0 Angstrom Crystal Structure Of Ca+2 Bound
Calmodulin
pdb|1N0Y|A Chain A, Crystal Structure Of Pb-Bound Calmodulin
pdb|1N0Y|B Chain B, Crystal Structure Of Pb-Bound Calmodulin
pdb|1OSA|A Chain A, Crystal Structure Of Recombinant Paramecium Tetraurelia
Calmodulin At 1.68 Angstroms Resolution
Length = 148
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 17/140 (12%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 16 FALFDKDG-DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMAR 74
Query: 169 QDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLE 228
+ E++ E F D D NG ++ E + + T + L ++++
Sbjct: 75 KMKEQD-----SEEELIEAFKVFDRDGNGLISAAELRHVM-------TNLGEKLTDDEVD 122
Query: 229 RM----DDDNDGKLNLDEFL 244
M D D DG +N +EF+
Sbjct: 123 EMIREADIDGDGHINYEEFV 142
>pdb|3SIB|A Chain A, Crystal Structure Of Ure3-Binding Protein, Wild-Type
Length = 220
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 117 KDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSKQDIEKNGM 176
+ G L +NEL + T + + + D D +G ISFYE++ + ++ N
Sbjct: 64 RSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYEFMAMYKFMELAYNLF 123
Query: 177 V 177
V
Sbjct: 124 V 124
>pdb|1XFX|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
Length = 149
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 9/137 (6%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 17 FSLFDKDG-DGTITTKELGTVXRSLGQNPTEAELQDXINEVDADGNGTIDFPEFLTXXAR 75
Query: 169 QDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLE 228
+ + + +E F D D NG ++ E H + + + + +
Sbjct: 76 KXKDTDSEEE-----IREAFRVFDKDGNGYISAAELR---HVXTNLGEKLTDEEVDQXIR 127
Query: 229 RMDDDNDGKLNLDEFLE 245
D D DG++N +EF++
Sbjct: 128 EADIDGDGQVNYEEFVQ 144
>pdb|3SJS|A Chain A, Crystal Structure Of Ure3-Binding Protein From Entamoeba
Histolytica, (D127a,N129a) Mutant, Native Form
pdb|3SIA|A Chain A, Crystal Structure Of Ure3-Binding Protein, (D127a,N129a)
Mutant, Iodide Phased
Length = 220
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 117 KDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSKQDIEKNGM 176
+ G L +NEL + T + + + D D +G ISFYE++ + ++ N
Sbjct: 64 RSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYEFMAMYKFMELAYNLF 123
Query: 177 V 177
V
Sbjct: 124 V 124
>pdb|1DMO|A Chain A, Calmodulin, Nmr, 30 Structures
pdb|3CLN|A Chain A, Structure Of Calmodulin Refined At 2.2 Angstroms
Resolution
Length = 148
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + DG ++ EL L + Q I D DG+G I F E+L ++
Sbjct: 16 FSLFDKDG-DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 74
Query: 169 Q----DIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLR 224
+ D E+ +E F D D NG ++ E + + T + L
Sbjct: 75 KMKDTDSEEE---------IREAFRVFDKDGNGYISAAELRHVM-------TNLGEKLTD 118
Query: 225 EKLERM----DDDNDGKLNLDEFLE 245
E+++ M + D DG++N +EF++
Sbjct: 119 EEVDEMIREANIDGDGQVNYEEFVQ 143
>pdb|3K21|A Chain A, Crystal Structure Of Carboxy-Terminus Of Pfc0420w
Length = 191
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 9/111 (8%)
Query: 137 RLSYTTQKQIELSDRDGDGEISFYEYLPQFSKQDIEKNGMVHGQAGWWKEQFDNADVDSN 196
+L Y ++ D DG G+I + E++ + +++ F DVD++
Sbjct: 84 KLPYNFDLLLDQIDSDGSGKIDYTEFIAAALDRKQLSKKLIYCA-------FRVFDVDND 136
Query: 197 GTLNFDEFYNFLHPEDSNNTAIQRWLLREK--LERMDDDNDGKLNLDEFLE 245
G + E + L+ + QR + R K + +D +NDGK++ EF E
Sbjct: 137 GEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFHEFSE 187
>pdb|1S6J|A Chain A, N-Terminal Region Of The Ca2+-Saturated Calcium Regulatory
Domain (Cld) From Soybean Calcium-Dependent Protein
Kinase- Alpha (Cdpk)
Length = 87
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 180 QAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMDDDNDGKLN 239
+ G KE F D D++GT+ FDE + L S + +++ ++ D D G ++
Sbjct: 21 EIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSE---LMESEIKDLMDAADIDKSGTID 77
Query: 240 LDEFLENTY 248
EF+ T
Sbjct: 78 YGEFIAATV 86
>pdb|2I2R|E Chain E, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|F Chain F, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|G Chain G, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|H Chain H, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|M Chain M, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|N Chain N, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|O Chain O, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|P Chain P, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
Length = 180
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 15/107 (14%)
Query: 150 DRDGDGEISFYEYLPQFSKQDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLH 209
D G + F +++ S I G VH + W F+ D++ +G +N +E + +
Sbjct: 63 DTTQTGSVKFEDFVTALS---ILLRGTVHEKLRW---TFNLYDINKDGYINKEEMMDIVK 116
Query: 210 PEDSNNTAIQRWLLREK---------LERMDDDNDGKLNLDEFLENT 247
A +L E ++MD + DG + LDEFLE+
Sbjct: 117 AIYDMMGAYTYPVLAEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESC 163
>pdb|2I18|A Chain A, The Refined Structure Of C-Terminal Domain Of An Ef-Hand
Calcium Binding Protein From Entamoeba Histolytica
Length = 64
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
Query: 147 ELSDRDGDGEISFYEYLPQFSKQDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYN 206
+L D DGDG+++ E F K IEK EQ AD + +G + +EF
Sbjct: 12 KLMDVDGDGKLTKEEVTSFFKKHGIEK----------VAEQVMKADANGDGYITLEEFLE 61
Query: 207 F 207
F
Sbjct: 62 F 62
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 192 DVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMDDDNDGKLNLDEFLE 245
DVD +G L +E +F A E++ + D + DG + L+EFLE
Sbjct: 15 DVDGDGKLTKEEVTSFFKKHGIEKVA-------EQVMKADANGDGYITLEEFLE 61
>pdb|1CDP|A Chain A, Restrained Least Squares Refinement Of Native (Calcium)
And Cadmium-Substituted Carp Parvalbumin Using X-Ray
Crystallographic Data At 1.6-Angstroms Resolution
pdb|4CPV|A Chain A, Refined Crystal Structure Of Calcium-Liganded Carp
Parvalbumin 4.25 At 1.5-Angstroms Resolution
pdb|5CPV|A Chain A, Restrained Least Squares Refinement Of Native (Calcium)
And Cadmium-Substituted Carp Parvalbumin Using X-Ray
Crystallographic Data At 1.6-Angstroms Resolution
Length = 109
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 173 KNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMDD 232
K G+ A K+ F D D +G + DE FL ++ A+ + L+ D
Sbjct: 33 KVGLTSKSADDVKKAFAIIDQDKSGFIEEDELKLFLQNFKADARALTDGETKTFLKAGDS 92
Query: 233 DNDGKLNLDEF 243
D DGK+ +DEF
Sbjct: 93 DGDGKIGVDEF 103
>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2
pdb|3NYV|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Non-Specific Inhibitor
Whi-P180
Length = 484
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 131 VELAVDRLSYTTQKQIELS----DRDGDGEISFYEYLPQFSKQDIEKNGMVHGQAGWWKE 186
V +A DR + +++++E + D D G+IS E F D++ WK
Sbjct: 405 VTVAXDRKTLLSRERLERAFRXFDSDNSGKISSTELATIFGVSDVDSET--------WKS 456
Query: 187 QFDNADVDSNGTLNFDEFYNFL 208
D +++G ++FDEF L
Sbjct: 457 VLSEVDKNNDGEVDFDEFQQXL 478
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 34/152 (22%)
Query: 150 DRDGDGE------ISFYEYLPQFSKQD---IEKNGMVHGQAGWWKEQFDNADVDSNGTLN 200
D++GDG+ I Y+ L + QD ++ + + H + D D D NG +
Sbjct: 345 DKNGDGQLDRAELIEGYKELXRXKGQDASXLDASAVEH----EVDQVLDAVDFDKNGYIE 400
Query: 201 FDEFYNFLHPEDSNNTAIQRWLLREKLER----MDDDNDGKLNLDEFL---------ENT 247
+ EF + L RE+LER D DN GK++ E T
Sbjct: 401 YSEFVTVAXDRKT-------LLSRERLERAFRXFDSDNSGKISSTELATIFGVSDVDSET 453
Query: 248 YRTYKSYAEFEDDGDGTDFPSAEETFVELDTN 279
+++ S + +DG+ DF ++ ++L N
Sbjct: 454 WKSVLSEVDKNNDGE-VDFDEFQQXLLKLCGN 484
>pdb|3DD4|A Chain A, Structural Basis Of Kchip4a Modulation Of Kv4.3 Slow
Inactivation
Length = 229
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 15/109 (13%)
Query: 150 DRDGDGEISFYEYLPQFSKQDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLH 209
D D +G +SF +++ S I G V + W F+ D++ +G + +E + +
Sbjct: 112 DTDHNGAVSFEDFIKGLS---ILLRGTVQEKLNW---AFNLYDINKDGYITKEEMLDIMK 165
Query: 210 PEDSNNTAIQRWLLREK---------LERMDDDNDGKLNLDEFLENTYR 249
+L+E ++MD + DG + +DEF+E+ +
Sbjct: 166 AIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTIDEFIESCQK 214
>pdb|1S1E|A Chain A, Crystal Structure Of Kv Channel-Interacting Protein 1
(Kchip-1)
Length = 224
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 15/107 (14%)
Query: 150 DRDGDGEISFYEYLPQFSKQDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLH 209
D G + F +++ S I G VH + W F+ D++ +G +N +E + +
Sbjct: 99 DTTQTGSVKFEDFVTALS---ILLRGTVHEKLRW---TFNLYDINKDGYINKEEMMDIVK 152
Query: 210 PEDSNNTAIQRWLLREK---------LERMDDDNDGKLNLDEFLENT 247
+L+E ++MD + DG + LDEFLE+
Sbjct: 153 AIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESC 199
>pdb|2PMY|A Chain A, Ef-Hand Domain Of Human Rasef
pdb|2PMY|B Chain B, Ef-Hand Domain Of Human Rasef
Length = 91
Score = 30.4 bits (67), Expect = 1.7, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 260 DGDGTDFPSAEETFVELDTNKDKLLEVEELKPIFSYLHPGEISYAKYYSRHLIHEADDNR 319
DGDG + F D N+ LE EE + + + L + R D +R
Sbjct: 20 DGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQR-----LDADR 74
Query: 320 DGNLTLDE 327
DG +T E
Sbjct: 75 DGAITFQE 82
>pdb|1FPW|A Chain A, Structure Of Yeast Frequenin
pdb|2JU0|A Chain A, Structure Of Yeast Frequenin Bound To Pdtins 4-Kinase
Length = 190
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 15/107 (14%)
Query: 150 DRDGDGEISFYEYLPQFSKQDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEF----- 204
D+D +G I F E++ S G + + W F+ D++ +G + FDE
Sbjct: 73 DKDNNGFIHFEEFITVLSTT---SRGTLEEKLSW---AFELYDLNHDGYITFDEMLTIVA 126
Query: 205 --YNFLHPEDSNNT--AIQRWLLREKLERMDDDNDGKLNLDEFLENT 247
Y + + N A +++ + MD + DG + LDEF E +
Sbjct: 127 SVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLDEFREGS 173
>pdb|2NZ0|A Chain A, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
pdb|2NZ0|C Chain C, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
Length = 180
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 15/107 (14%)
Query: 150 DRDGDGEISFYEYLPQFSKQDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLH 209
D G + F +++ S I G VH + W F+ D++ +G +N +E + +
Sbjct: 63 DTTQTGSVKFEDFVTALS---ILLRGTVHEKLRW---TFNLYDINKDGYINKEEMMDIVK 116
Query: 210 PEDSNNTAIQRWLLREK---------LERMDDDNDGKLNLDEFLENT 247
+L+E ++MD + DG + LDEFLE+
Sbjct: 117 AIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESC 163
>pdb|2KSZ|A Chain A, The Solution Structure Of The Magnesium Bound Soybean
Calmod Isoform 4 N-Domain
Length = 76
Score = 29.6 bits (65), Expect = 2.3, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 184 WKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMDDDNDGKLNLDEF 243
+KE F D D +G + +E + D N T + L++ + +D D +G + DEF
Sbjct: 12 FKEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEE---LQDMISEVDADGNGTIEFDEF 68
Query: 244 L 244
L
Sbjct: 69 L 69
>pdb|2ROA|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 4 N-Terminal Domain
Length = 79
Score = 29.6 bits (65), Expect = 2.7, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 184 WKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMDDDNDGKLNLDEF 243
+KE F D D +G + +E + D N T + L++ + +D D +G + DEF
Sbjct: 12 FKEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEE---LQDMISEVDADGNGTIEFDEF 68
Query: 244 L 244
L
Sbjct: 69 L 69
>pdb|1S6C|A Chain A, Crystal Structure Of The Complex Between Kchip1 And Kv4.2
N1-30
Length = 183
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 19/108 (17%)
Query: 150 DRDGDGEISFYEYLPQFSKQDIEKNGMVHGQAGWWKEQFDNADVDSNGTLN--------- 200
D G + F +++ S I G VH + W F+ D++ +G +N
Sbjct: 66 DTTQTGSVKFEDFVTALS---ILLRGTVHEKLRW---TFNLYDINKDGYINKEEMMDIVK 119
Query: 201 --FDEFYNFLHPEDSNNTAIQRWLLREKLERMDDDNDGKLNLDEFLEN 246
+D + +P +T Q + ++MD + DG + LDEFLE+
Sbjct: 120 AIYDMMGKYTYPVLKEDTPRQH--VDVFFQKMDKNKDGIVTLDEFLES 165
>pdb|1TTX|A Chain A, Solution Stucture Of Human Beta Parvalbumin (Oncomodulin)
Refined With A Paramagnetism Based Strategy
Length = 109
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%)
Query: 172 EKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMD 231
+ +G+ A K+ F D D +G L+ +E FL +S + + + D
Sbjct: 32 QTSGLSKMSANQVKDVFRFIDNDQSGYLDEEELKFFLQKFESGARELTESETKSLMAAAD 91
Query: 232 DDNDGKLNLDEFLENTY 248
+D DGK+ +EF E +
Sbjct: 92 NDGDGKIGAEEFQEMVH 108
>pdb|1NYA|A Chain A, Nmr Solution Structure Of Calerythrin, An Ef-hand Calcium-
Binding Protein
Length = 176
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 19/117 (16%)
Query: 191 ADVDSNGTLNFDEFYN------FLHPEDSNNTAIQRWLLREKLERMDDDNDGKLNLDEFL 244
A V S+G+L ++F F E S N + +++ + D + DG++N DEF
Sbjct: 67 AGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGP-VVKGIVGMCDKNADGQINADEFA 125
Query: 245 ENTYRTYKSYAEFEDDGDGTDFPSAEETFVELDTNKDKLLEVEELKPIFSYLHPGEI 301
S AE A E F ++DTN + L ++EL H G +
Sbjct: 126 AWLTALGMSKAE------------AAEAFNQVDTNGNGELSLDELLTAVRDFHFGRL 170
>pdb|1TIZ|A Chain A, Solution Structure Of A Calmodulin-Like Calcium-Binding
Domain From Arabidopsis Thaliana
Length = 67
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 20/76 (26%)
Query: 141 TTQKQIELSDRDGDGEISFYEYL-------PQFSKQDIEKNGMVHGQAGWWKEQFDNADV 193
+ ++ E D++ DG++S E+ P F+++DI K F+ DV
Sbjct: 2 SAKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKF-------------FEEIDV 48
Query: 194 DSNGTLNFDEFYNFLH 209
D NG LN DEF + +
Sbjct: 49 DGNGELNADEFTSCIE 64
>pdb|3KF9|A Chain A, Crystal Structure Of The SdcenSKMLCK COMPLEX
pdb|3KF9|C Chain C, Crystal Structure Of The SdcenSKMLCK COMPLEX
Length = 149
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 9/142 (6%)
Query: 109 FPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLPQFSK 168
F L D + G + EL L + +K I D+DG G I F E+L +
Sbjct: 14 FDLFDTDGS-GTIDAKELKVAMRALGFEPKKEEIKKMIADIDKDGSGTIDFEEFLQMMTA 72
Query: 169 QDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLE 228
+ E++ + FD+ D G ++F N T + L+E ++
Sbjct: 73 KMGERDSREEIMKAFR--LFDD---DETGKISFKNLKRVAKELGENMTDEE---LQEMID 124
Query: 229 RMDDDNDGKLNLDEFLENTYRT 250
D D DG++N +EF +T
Sbjct: 125 EADRDGDGEVNEEEFFRIMKKT 146
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 105 LIYLFPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYLP 164
++ F L D++ G +S L EL + Q+ I+ +DRDGDGE++ E+
Sbjct: 83 IMKAFRLFDDDET-GKISFKNLKRVAKELGENMTDEELQEMIDEADRDGDGEVNEEEFFR 141
Query: 165 QFSK 168
K
Sbjct: 142 IMKK 145
>pdb|1QX2|A Chain A, X-Ray Structure Of Calcium-Loaded Calbindomodulin (A
Calbindin D9k Re- Engineered To Undergo A Conformational
Opening) At 1.44 A Resolution
pdb|1QX2|B Chain B, X-Ray Structure Of Calcium-Loaded Calbindomodulin (A
Calbindin D9k Re- Engineered To Undergo A Conformational
Opening) At 1.44 A Resolution
Length = 76
Score = 28.9 bits (63), Expect = 4.7, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 141 TTQKQIELSDRDGDGEISFYEYLPQFSK 168
T + IE D++GDGE+SF E+L K
Sbjct: 46 TLDEMIEEVDKNGDGEVSFEEFLVMMKK 73
>pdb|1B8R|A Chain A, Parvalbumin
Length = 108
Score = 28.9 bits (63), Expect = 4.9, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 33/71 (46%)
Query: 173 KNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMDD 232
K G+ A K+ F D D +G + DE FL ++ A+ + L+ D
Sbjct: 32 KVGLTSKSADDVKKAFAIIDQDKSGFIEEDELKLFLQNFKADARALTDGETKTFLKAGDS 91
Query: 233 DNDGKLNLDEF 243
D DGK+ +DE+
Sbjct: 92 DGDGKIGVDEW 102
>pdb|1YX7|A Chain A, Nmr Structure Of Calsensin, Energy Minimized Average
Structure.
pdb|1YX8|A Chain A, Nmr Structure Of Calsensin, 20 Low Energy Structures
Length = 83
Score = 28.9 bits (63), Expect = 5.1, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 270 EETFVELDTNKDKLLEVEELKPIFSYLHPGEI---SYAKYYSRHLIHEADDNRDGNLTLD 326
E F +LD N D + EL+ L + K S LI AD N DG ++ +
Sbjct: 10 EAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKE 69
Query: 327 EMLN 330
E LN
Sbjct: 70 EFLN 73
>pdb|1QXP|A Chain A, Crystal Structure Of A Mu-Like Calpain
pdb|1QXP|B Chain B, Crystal Structure Of A Mu-Like Calpain
Length = 900
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 223 LREKLERMDDDNDGKLNLDEF--LENTYRTYKS-YAEFEDDGDGT----DFPSAEET 272
R + MD D GKL +EF L N + ++ Y FE D GT + P A E
Sbjct: 776 CRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQGIYKRFETDRSGTIGSNELPGAFEA 832
>pdb|1NSH|A Chain A, Solution Structure Of Rabbit Apo-S100a11 (19 Models)
pdb|1NSH|B Chain B, Solution Structure Of Rabbit Apo-S100a11 (19 Models)
Length = 101
Score = 28.5 bits (62), Expect = 6.0, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 198 TLNFDEFYNFLHPEDSNNTAIQR--WLLREKLERMDDDNDGKLNLDEFL 244
TL+ EF +F++ E + T Q+ +L ++++D ++DG+L+ EFL
Sbjct: 29 TLSKTEFLSFMNTELAAFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFL 77
>pdb|2RO8|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 1 N-Terminal Domain
Length = 79
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 18/67 (26%)
Query: 148 LSDRDGDGEISFYEYLPQFSKQDIEKNGMVHGQAGW------WKEQFDNADVDSNGTLNF 201
L D+DGDG I+ E G V G ++ + D D NGT++F
Sbjct: 18 LFDKDGDGCITTKEL------------GTVMRSLGQNPTEAELQDMINEVDADGNGTIDF 65
Query: 202 DEFYNFL 208
EF N +
Sbjct: 66 PEFLNLM 72
>pdb|3MCM|A Chain A, Crystal Structure Of The 6-Hyroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Dihydropteroate Synthase Bifunctional
Enzyme From Francisella Tularensis
pdb|3MCM|B Chain B, Crystal Structure Of The 6-Hyroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Dihydropteroate Synthase Bifunctional
Enzyme From Francisella Tularensis
pdb|3MCN|A Chain A, Crystal Structure Of The 6-Hyroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Dihydropteroate Synthase Bifunctional
Enzyme From Francisella Tularensis
pdb|3MCN|B Chain B, Crystal Structure Of The 6-Hyroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Dihydropteroate Synthase Bifunctional
Enzyme From Francisella Tularensis
pdb|3MCO|A Chain A, Crystal Structure Of The 6-Hyroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Dihydropteroate Synthase Bifunctional
Enzyme From Francisella Tularensis
pdb|3MCO|B Chain B, Crystal Structure Of The 6-Hyroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Dihydropteroate Synthase Bifunctional
Enzyme From Francisella Tularensis
Length = 442
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 232 DDNDGKLNLDEFLENTYRTYKSYAEFEDDGDGTDFPSAEETFVELDTNK 280
DDN KLNLDE ++ S AE D G + P A+ +E + NK
Sbjct: 210 DDNQRKLNLDELIQ-------SGAEIIDIGAESTKPDAKPISIEEEFNK 251
>pdb|2GGZ|A Chain A, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
pdb|2GGZ|B Chain B, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
Length = 211
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 20/147 (13%)
Query: 122 SLNELDNWNVELAVDRLSYTTQKQIELS----DRDGDGEISFYEYLPQFSKQDIEKNGMV 177
L L + L + L+ K I+ D + DG + F E++ + EK +
Sbjct: 35 GLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGFVDFLEFIAAVNLIMQEK---M 91
Query: 178 HGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNN---TAIQRWLLREKLERMDDDN 234
+ W+ F D D NG+++ +E + + N T + ++D +N
Sbjct: 92 EQKLKWY---FKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINN 148
Query: 235 DGKLNLDEFLENTYR-------TYKSY 254
DG+L L+EF+ + YKS+
Sbjct: 149 DGELTLEEFINGMAKDQDLLEIVYKSF 175
>pdb|3E3R|A Chain A, Crystal Structure And Biochemical Characterization Of
Recombinant Human Calcyphosine Delineates A Novel
Ef-hand-containing Protein Family
pdb|3E3R|B Chain B, Crystal Structure And Biochemical Characterization Of
Recombinant Human Calcyphosine Delineates A Novel
Ef-hand-containing Protein Family
Length = 204
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 15/97 (15%)
Query: 150 DRDGDGEISFYEYLPQFSKQDIEKNGMVHGQA---GWWKEQFDNADVDSNGTLNFDEFYN 206
DRDG + E+ +Q + K G+V QA G ++ D + +GTL+ +EF
Sbjct: 47 DRDGSRSLDADEF-----RQGLAKLGLVLDQAEAEGVCRKW----DRNGSGTLDLEEFLR 97
Query: 207 FLHPEDSNNTAIQRWLLREKLERMDDDNDGKLNLDEF 243
L P S + ++ ++D DG + +D+
Sbjct: 98 ALRPPMSQ---AREAVIAAAFAKLDRSGDGVVTVDDL 131
>pdb|2BL0|C Chain C, Physarum Polycephalum Myosin Ii Regulatory Domain
Length = 142
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 169 QDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLE 228
Q + K V + + E F+ AD NG + F EF + + T+ +LR+
Sbjct: 29 QTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPEFLSMMGRRMKQTTS--EDILRQAFR 86
Query: 229 RMDDDNDG 236
D + G
Sbjct: 87 TFDPEGTG 94
>pdb|2AAO|A Chain A, Regulatory Apparatus Of Calcium Dependent Protein Kinase
From Arabidopsis Thaliana
pdb|2AAO|B Chain B, Regulatory Apparatus Of Calcium Dependent Protein Kinase
From Arabidopsis Thaliana
Length = 166
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 12/95 (12%)
Query: 182 GWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLLREKLERMDDDNDGKLNLD 241
KE F+ D D +G + F+E L +N ++ + + + D DN G ++
Sbjct: 27 AGLKEXFNXIDADKSGQITFEELKAGLKRVGAN---LKESEILDLXQAADVDNSGTIDYK 83
Query: 242 EFLENTY---------RTYKSYAEFEDDGDGTDFP 267
EF+ T + ++ F+ DG G P
Sbjct: 84 EFIAATLHLNKIEREDHLFAAFTYFDKDGSGYITP 118
>pdb|1Y1X|A Chain A, Structural Analysis Of A Homolog Of Programmed Cell Death
6 Protein From Leishmania Major Friedlin
pdb|1Y1X|B Chain B, Structural Analysis Of A Homolog Of Programmed Cell Death
6 Protein From Leishmania Major Friedlin
Length = 191
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 16/147 (10%)
Query: 99 LNITSRLIYLFPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEIS 158
+N L+ F +D + G +S+ EL+ V TT+K + + D++ GEI+
Sbjct: 23 MNDNQELMEWFRAVDTD-GSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEIT 81
Query: 159 FYEYLPQFSKQDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAI 218
F E+ +D+ H +E F D +G L+ +E L S+ +
Sbjct: 82 FDEF------KDL------HHFILSMREGFRKRDSSGDGRLDSNEVRAALL---SSGYQV 126
Query: 219 QRWLLREKLERMDDDNDGKLNLDEFLE 245
+ + + D G L D+++E
Sbjct: 127 SEQTFQALMRKFDRQRRGSLGFDDYVE 153
>pdb|1KFX|S Chain S, Crystal Structure Of Human M-Calpain Form I
pdb|1KFU|S Chain S, Crystal Structure Of Human M-Calpain Form Ii
Length = 184
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 223 LREKLERMDDDNDGKLNLDEF--LENTYRTYKS-YAEFEDDGDGT----DFPSAEET 272
R + MD D GKL +EF L N + +++ Y +F+ D GT + P A E
Sbjct: 60 CRSMVAVMDSDTTGKLGFEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSELPGAFEA 116
>pdb|3PM8|A Chain A, Cad Domain Of Pff0520w, Calcium Dependent Protein Kinase
pdb|3PM8|B Chain B, Cad Domain Of Pff0520w, Calcium Dependent Protein Kinase
Length = 197
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 63/141 (44%), Gaps = 10/141 (7%)
Query: 104 RLIYLFPLIDNEPKDGVLSLNELDNWNVELAVDRLSYTTQKQIELSDRDGDGEISFYEYL 163
R I++ +DN G LS E+ + ++ ++ + + D + G+I + ++L
Sbjct: 60 RNIFIALDVDNS---GTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDFL 116
Query: 164 PQFSKQDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNFLHPEDSNNTAIQRWLL 223
I+K + + +F D+D NG ++ +E +D N I + +
Sbjct: 117 AA----TIDKQTYLKKEVCLIPFKF--FDIDGNGKISVEELKRIFGRDDIENPLIDKA-I 169
Query: 224 REKLERMDDDNDGKLNLDEFL 244
L+ +D + DG+++ EF+
Sbjct: 170 DSLLQEVDLNGDGEIDFHEFM 190
>pdb|2I08|A Chain A, Solvation Effect In Conformational Changes Of Ef-Hand
Proteins: X-Ray Structure Of Ca2+-Saturated Double
Mutant Q41l-K75i Of N-Domain Of Calmodulin
Length = 78
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 148 LSDRDGDGEISFYEYLPQFSKQDIEKNGMVHGQAGWWKEQFDNADVDSNGTLNFDEFYNF 207
L D+DGDG I+ E + ++ ++ ++ + D D NGT++F EF
Sbjct: 18 LYDKDGDGTITTKEL------GTVMRSLGLNPTEAELQDMINEVDADGNGTIDFPEFLTM 71
Query: 208 L 208
+
Sbjct: 72 M 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,320,155
Number of Sequences: 62578
Number of extensions: 474231
Number of successful extensions: 1815
Number of sequences better than 100.0: 187
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 139
Number of HSP's that attempted gapping in prelim test: 1294
Number of HSP's gapped (non-prelim): 433
length of query: 354
length of database: 14,973,337
effective HSP length: 100
effective length of query: 254
effective length of database: 8,715,537
effective search space: 2213746398
effective search space used: 2213746398
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)