BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048601
(418 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 90.9 bits (224), Expect = 1e-18, Method: Composition-based stats.
Identities = 54/133 (40%), Positives = 70/133 (52%), Gaps = 21/133 (15%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
T LH AA NG +V++L+E GAD KD GR+ +A GH+EV+++L
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL--------- 54
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
+ GA N D+ G TPLH+AA GH VV LL+E GADV +D G
Sbjct: 55 ------------LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR 102
Query: 388 APLHLAVEGGRVE 400
PLHLA G +E
Sbjct: 103 TPLHLAARNGHLE 115
Score = 85.9 bits (211), Expect = 4e-17, Method: Composition-based stats.
Identities = 55/145 (37%), Positives = 72/145 (49%), Gaps = 21/145 (14%)
Query: 233 GRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADP 292
GRTPLHLA + K+LLE+ T LH AA NG +V++L+E GAD
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 293 TIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQY 352
KD GR+ +A GH+EV+++L + GA N D+
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLL---------------------LEAGADVNAKDKN 100
Query: 353 GLTPLHIAAIKGHKHVVLLLIEFGA 377
G TPLH+AA GH VV LL+E GA
Sbjct: 101 GRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 75.9 bits (185), Expect = 4e-14, Method: Composition-based stats.
Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 197 DGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESX 256
+G + LH+AA G E + L ++ ++ +DK GRTPLHLA + K+LLE+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLL--LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 257 XXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLE 316
T LH AA NG +V++L+E GAD KD GR+ +A GH+EV++
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 118
Query: 317 VL 318
+L
Sbjct: 119 LL 120
Score = 65.5 bits (158), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/102 (38%), Positives = 51/102 (50%), Gaps = 21/102 (20%)
Query: 299 GRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLH 358
GR+ +A GH+EV+++L + GA N D+ G TPLH
Sbjct: 2 GRTPLHLAARNGHLEVVKLL---------------------LEAGADVNAKDKNGRTPLH 40
Query: 359 IAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
+AA GH VV LL+E GADV +D G PLHLA G +E
Sbjct: 41 LAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 82
Score = 64.3 bits (155), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/129 (36%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 164 RVATELAANSE--DMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMK 221
R LAA + ++V LLL AG D K K+G + LH+AA G E + L ++
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAG----ADVNAKDKNGRTPLHLAARNGHLEVVKLL--LE 56
Query: 222 EYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRM 281
++ +DK GRTPLHLA + K+LLE+ T LH AA NG +
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 116
Query: 282 VEMLIEMGA 290
V++L+E GA
Sbjct: 117 VKLLLEAGA 125
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Query: 128 LRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSE--DMVSLLLRAGL 185
L A NG VK +L+ AG + R LAA + ++V LLL AG
Sbjct: 39 LHLAARNGHLEVVKLLLE------AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG- 91
Query: 186 SIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEY 223
D K K+G + LH+AA G E + L+ Y
Sbjct: 92 ---ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 78/162 (48%), Gaps = 22/162 (13%)
Query: 250 KVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDK 309
K LLE+ T LH AA NG + +V++L+ GADP KD GR+ A +
Sbjct: 21 KDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAEN 80
Query: 310 GHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVV 369
GH E++++L KGA N D G TPLH AA GHK +V
Sbjct: 81 GHKEIVKLL---------------------LSKGADPNAKDSDGRTPLHYAAENGHKEIV 119
Query: 370 LLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWG 411
LL+ GAD D++G PL LA E G E ++ + KQ G
Sbjct: 120 KLLLSKGADPNTSDSDGRTPLDLAREHGNEE-IVKLLEKQGG 160
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 64/128 (50%), Gaps = 21/128 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
AA NG++ V+ L+E GADP D GR+ A + GH E++++L
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLL-------------- 56
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
KGA N D G TPLH AA GHK +V LL+ GAD +D++G PLH
Sbjct: 57 -------LSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHY 109
Query: 393 AVEGGRVE 400
A E G E
Sbjct: 110 AAENGHKE 117
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 78/154 (50%), Gaps = 7/154 (4%)
Query: 168 ELAAN-SEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESL 226
E A N ++D V LL G D DG + LH AA G +EI L+ K +
Sbjct: 10 EAAENGNKDRVKDLLENG----ADPNASDSDGRTPLHYAAENGH-KEIVKLLLSKGADP- 63
Query: 227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLI 286
+ +D +GRTPLH A K+LL T LH AA NG + +V++L+
Sbjct: 64 NAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLL 123
Query: 287 EMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQR 320
GADP D GR+ D+AR+ G+ E++++L++
Sbjct: 124 SKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 41/80 (51%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
G+ ++ AA + GA N D G TPLH AA GHK +V LL+ GAD
Sbjct: 5 GKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 64
Query: 381 CQDNEGHAPLHLAVEGGRVE 400
+D++G PLH A E G E
Sbjct: 65 AKDSDGRTPLHYAAENGHKE 84
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 79/162 (48%), Gaps = 22/162 (13%)
Query: 250 KVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDK 309
K L+E+ T LH+AA NG + +V++LI GAD KD GR+ A +
Sbjct: 21 KDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN 80
Query: 310 GHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVV 369
GH EV+++L KGA N D G TPLH AA GHK VV
Sbjct: 81 GHKEVVKLL---------------------ISKGADVNAKDSDGRTPLHHAAENGHKEVV 119
Query: 370 LLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWG 411
LLI GADV D++G PL LA E G E ++ + KQ G
Sbjct: 120 KLLISKGADVNTSDSDGRTPLDLAREHGN-EEVVKLLEKQGG 160
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 67/136 (49%), Gaps = 21/136 (15%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
AA NG++ V+ LIE GAD D GR+ A + GH EV+++L
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLL-------------- 56
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
KGA N D G TPLH AA GHK VV LLI GADV +D++G PLH
Sbjct: 57 -------ISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHH 109
Query: 393 AVEGGRVEPLLFIWLK 408
A E G E + + K
Sbjct: 110 AAENGHKEVVKLLISK 125
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 7/154 (4%)
Query: 168 ELAAN-SEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESL 226
E A N ++D V L+ G + DG + LH AA G E + L+ + +
Sbjct: 10 EAAENGNKDRVKDLIENGADV----NASDSDGRTPLHHAAENGHKEVVKLLI--SKGADV 63
Query: 227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLI 286
+ +D +GRTPLH A K+L+ T LH+AA NG + +V++LI
Sbjct: 64 NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLI 123
Query: 287 EMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQR 320
GAD D GR+ D+AR+ G+ EV+++L++
Sbjct: 124 SKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 45/88 (51%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
G+ ++ AA + GA N D G TPLH AA GHK VV LLI GADV
Sbjct: 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN 64
Query: 381 CQDNEGHAPLHLAVEGGRVEPLLFIWLK 408
+D++G PLH A E G E + + K
Sbjct: 65 AKDSDGRTPLHHAAENGHKEVVKLLISK 92
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 80/162 (49%), Gaps = 22/162 (13%)
Query: 250 KVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDK 309
K LLE+ T LH AA NG + +V++L+ GADP KD G++ +A +
Sbjct: 21 KDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAEN 80
Query: 310 GHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVV 369
GH EV+++L +GA N D G TPLH+AA GHK VV
Sbjct: 81 GHKEVVKLL---------------------LSQGADPNAKDSDGKTPLHLAAENGHKEVV 119
Query: 370 LLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWG 411
LL+ GAD D++G PL LA E G E ++ + KQ G
Sbjct: 120 KLLLSQGADPNTSDSDGRTPLDLAREHGN-EEVVKLLEKQGG 160
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 66/128 (51%), Gaps = 21/128 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
AA NG++ V+ L+E GAD D G++ +A + GH EV+++L
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLL-------------- 56
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
+GA N D G TPLH+AA GHK VV LL+ GAD +D++G PLHL
Sbjct: 57 -------LSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHL 109
Query: 393 AVEGGRVE 400
A E G E
Sbjct: 110 AAENGHKE 117
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 7/154 (4%)
Query: 168 ELAAN-SEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESL 226
E A N ++D V LL G + DG + LH+AA G E + L + +
Sbjct: 10 EAAENGNKDRVKDLLENGADV----NASDSDGKTPLHLAAENGHKEVVKLL--LSQGADP 63
Query: 227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLI 286
+ +D +G+TPLHLA K+LL T LH AA NG + +V++L+
Sbjct: 64 NAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLL 123
Query: 287 EMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQR 320
GADP D GR+ D+AR+ G+ EV+++L++
Sbjct: 124 SQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 43/80 (53%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
G+ ++ AA + GA N D G TPLH+AA GHK VV LL+ GAD
Sbjct: 5 GKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 64
Query: 381 CQDNEGHAPLHLAVEGGRVE 400
+D++G PLHLA E G E
Sbjct: 65 AKDSDGKTPLHLAAENGHKE 84
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 78/162 (48%), Gaps = 22/162 (13%)
Query: 250 KVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDK 309
K L+E+ T LH AA G + +V++LI GAD KD GR+ A +
Sbjct: 21 KDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKE 80
Query: 310 GHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVV 369
GH E++++L KGA N D G TPLH AA +GHK +V
Sbjct: 81 GHKEIVKLL---------------------ISKGADVNAKDSDGRTPLHYAAKEGHKEIV 119
Query: 370 LLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWG 411
LLI GADV D++G PL LA E G E ++ + KQ G
Sbjct: 120 KLLISKGADVNTSDSDGRTPLDLAREHGN-EEIVKLLEKQGG 160
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 65/128 (50%), Gaps = 21/128 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
AA NG++ V+ LIE GAD D GR+ A +GH E++++L
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLL-------------- 56
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
KGA N D G TPLH AA +GHK +V LLI GADV +D++G PLH
Sbjct: 57 -------ISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHY 109
Query: 393 AVEGGRVE 400
A + G E
Sbjct: 110 AAKEGHKE 117
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 7/154 (4%)
Query: 168 ELAAN-SEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESL 226
E A N ++D V L+ G + DG + LH AA G E + L+ + +
Sbjct: 10 EAAENGNKDRVKDLIENGADV----NASDSDGRTPLHYAAKEGHKEIVKLLI--SKGADV 63
Query: 227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLI 286
+ +D +GRTPLH A + K+L+ T LH AA G + +V++LI
Sbjct: 64 NAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLI 123
Query: 287 EMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQR 320
GAD D GR+ D+AR+ G+ E++++L++
Sbjct: 124 SKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 43/80 (53%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
G+ ++ AA + GA N D G TPLH AA +GHK +V LLI GADV
Sbjct: 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 64
Query: 381 CQDNEGHAPLHLAVEGGRVE 400
+D++G PLH A + G E
Sbjct: 65 AKDSDGRTPLHYAAKEGHKE 84
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 113/247 (45%), Gaps = 18/247 (7%)
Query: 175 DMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGR 234
+MV LLL + + T G + LH+AA G E + +L+ + ++ C K+G
Sbjct: 94 NMVKLLLEN----NANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA--CMTKKGF 147
Query: 235 TPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTI 294
TPLH+A + A++LLE T LH A + + +V++L+ G P
Sbjct: 148 TPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS 207
Query: 295 KDDRGRSCFDVARDKGHIEVL-EVLQRG-----EAVLT------AARRXXXXXXXXXXDK 342
G + +A + +EV +LQ G E+V AA+ K
Sbjct: 208 PAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK 267
Query: 343 GASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPL 402
A+ N ++ GLTPLH+ A +GH V +LI+ G V+ G+ PLH+A G ++ +
Sbjct: 268 QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV 327
Query: 403 LFIWLKQ 409
F+ Q
Sbjct: 328 KFLLQHQ 334
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 98/213 (46%), Gaps = 14/213 (6%)
Query: 200 SELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXX 259
+ LHVA+ G + +L ++ S + + + TPLH+A AK LL++
Sbjct: 16 TPLHVASFMGHLPIVKNL--LQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV 73
Query: 260 XXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIE-VLEVL 318
T LH AA G MV++L+E A+P + G + +A +GH+E VL +L
Sbjct: 74 NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 133
Query: 319 QR--GEAVLT---------AARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKH 367
++ +A +T AA+ ++ A N + GLTPLH+A +
Sbjct: 134 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLD 193
Query: 368 VVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
+V LL+ G G+ PLH+A + +VE
Sbjct: 194 IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVE 226
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 88/216 (40%), Gaps = 23/216 (10%)
Query: 194 KTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLL 253
K KD + LH AA G T + L+ +L G TPLH+A + + LL
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT--TAGHTPLHIAAREGHVETVLALL 133
Query: 254 ESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIE 313
E T LH AA G R+ E+L+E A P G + VA +++
Sbjct: 134 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLD 193
Query: 314 VLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLI 373
++++L +G S + G TPLHIAA + V L+
Sbjct: 194 IVKLL---------------------LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL 232
Query: 374 EFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQ 409
++G + +G PLHLA + G E + + KQ
Sbjct: 233 QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 268
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 98/258 (37%), Gaps = 43/258 (16%)
Query: 185 LSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDK------------- 231
L E + TK G++ LHVAA +G+ L+ + + ++
Sbjct: 133 LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL 192
Query: 232 ------------------EGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNA 273
G TPLH+A + + A+ LL+ T LH A
Sbjct: 193 DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLA 252
Query: 274 AANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXXX 333
A G MV +L+ A+ + + G + + +GH+ V +VL + ++ A R
Sbjct: 253 AQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGY 312
Query: 334 XXXXXXXDKG------------ASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVEC 381
G A N + G +PLH AA +GH +V LL++ GA
Sbjct: 313 TPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE 372
Query: 382 QDNEGHAPLHLAVEGGRV 399
++G PL +A G +
Sbjct: 373 VSSDGTTPLAIAKRLGYI 390
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 77/167 (46%), Gaps = 9/167 (5%)
Query: 156 SAEAESLYRVAT-ELAANS--EDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTE 212
SA AES+ V LAA +MV+LLL S + + + K G + LH+ A G
Sbjct: 237 SANAESVQGVTPLHLAAQEGHAEMVALLL----SKQANGNLGNKSGLTPLHLVAQEGHVP 292
Query: 213 EISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHN 272
L+ K +D + G TPLH+A + +I K LL+ + LH
Sbjct: 293 VADVLI--KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQ 350
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQ 319
AA G +V +L++ GA P G + +A+ G+I V +VL+
Sbjct: 351 AAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK 397
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 21/142 (14%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
T LH A+ G +V+ L++ GA P + + + + +A GH EV + L + +A + A
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
+ DQ TPLH AA GH ++V LL+E A+ GH
Sbjct: 76 KAKD------------------DQ---TPLHCAARIGHTNMVKLLLENNANPNLATTAGH 114
Query: 388 APLHLAVEGGRVEPLLFIWLKQ 409
PLH+A G VE +L + K+
Sbjct: 115 TPLHIAAREGHVETVLALLEKE 136
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 82/150 (54%), Gaps = 6/150 (4%)
Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRD 230
A +D V +L+ G + K KDG++ LH+AA G E + L +K ++ +D
Sbjct: 12 AGQDDEVRILMANGADV----NAKDKDGYTPLHLAAREGHLEIVEVL--LKAGADVNAKD 65
Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA 290
K+G TPLHLA + + +VLL++ T LH AA G +VE+L++ GA
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 291 DPTIKDDRGRSCFDVARDKGHIEVLEVLQR 320
D +D G++ FD+A D G+ ++ EVLQ+
Sbjct: 126 DVNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 86/193 (44%), Gaps = 56/193 (29%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
AA G+ +E+ L M ++ +DK+G TPLHLA
Sbjct: 9 AARAGQDDEVRIL--MANGADVNAKDKDGYTPLHLA------------------------ 42
Query: 265 XXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV 324
A G +VE+L++ GAD KD G + +A +GH+E++EVL +
Sbjct: 43 ---------AREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA--- 90
Query: 325 LTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDN 384
GA N D+ G TPLH+AA +GH +V +L++ GADV QD
Sbjct: 91 ------------------GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 132
Query: 385 EGHAPLHLAVEGG 397
G P LA++ G
Sbjct: 133 FGKTPFDLAIDNG 145
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 66/128 (51%), Gaps = 21/128 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
AA G V +L+ GAD KD G + +A +GH+E++EVL +
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA----------- 57
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
GA N D+ G TPLH+AA +GH +V +L++ GADV +D +G+ PLHL
Sbjct: 58 ----------GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHL 107
Query: 393 AVEGGRVE 400
A G +E
Sbjct: 108 AAREGHLE 115
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
G+ +L AAR GA N D+ G TPLH+AA +GH +V +L++ GADV
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 381 CQDNEGHAPLHLAVEGGRVE 400
+D +G+ PLHLA G +E
Sbjct: 63 AKDKDGYTPLHLAAREGHLE 82
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 82/150 (54%), Gaps = 6/150 (4%)
Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRD 230
A +D V +L+ G + K KDG++ LH+AA G E + L +K ++ +D
Sbjct: 12 AGQDDEVRILMANGADV----NAKDKDGYTPLHLAAREGHLEIVEVL--LKAGADVNAKD 65
Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA 290
K+G TPLHLA + + +VLL++ T LH AA G +VE+L++ GA
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 291 DPTIKDDRGRSCFDVARDKGHIEVLEVLQR 320
D +D G++ FD+A +GH ++ EVLQ+
Sbjct: 126 DVNAQDKFGKTPFDLAIREGHEDIAEVLQK 155
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 85/193 (44%), Gaps = 56/193 (29%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
AA G+ +E+ L M ++ +DK+G TPLHLA
Sbjct: 9 AARAGQDDEVRIL--MANGADVNAKDKDGYTPLHLA------------------------ 42
Query: 265 XXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV 324
A G +VE+L++ GAD KD G + +A +GH+E++EVL +
Sbjct: 43 ---------AREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA--- 90
Query: 325 LTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDN 384
GA N D+ G TPLH+AA +GH +V +L++ GADV QD
Sbjct: 91 ------------------GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 132
Query: 385 EGHAPLHLAVEGG 397
G P LA+ G
Sbjct: 133 FGKTPFDLAIREG 145
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 66/128 (51%), Gaps = 21/128 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
AA G V +L+ GAD KD G + +A +GH+E++EVL +
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA----------- 57
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
GA N D+ G TPLH+AA +GH +V +L++ GADV +D +G+ PLHL
Sbjct: 58 ----------GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHL 107
Query: 393 AVEGGRVE 400
A G +E
Sbjct: 108 AAREGHLE 115
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
G+ +L AAR GA N D+ G TPLH+AA +GH +V +L++ GADV
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 381 CQDNEGHAPLHLAVEGGRVE 400
+D +G+ PLHLA G +E
Sbjct: 63 AKDKDGYTPLHLAAREGHLE 82
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRD 230
A +D V +L+ G + K KDG++ LH+AA G E + L +K ++ +D
Sbjct: 24 AGQDDEVRILMANGADV----NAKDKDGYTPLHLAAREGHLEIVEVL--LKAGADVNAKD 77
Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA 290
K+G TPLHLA + + +VLL++ T LH AA G +VE+L++ GA
Sbjct: 78 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 137
Query: 291 DPTIKDDRGRSCFDVARDKGHIEVLEVLQ 319
D +D G++ FD++ D G+ ++ E+LQ
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 66/128 (51%), Gaps = 21/128 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
AA G V +L+ GAD KD G + +A +GH+E++EVL +
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA----------- 69
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
GA N D+ G TPLH+AA +GH +V +L++ GADV +D +G+ PLHL
Sbjct: 70 ----------GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHL 119
Query: 393 AVEGGRVE 400
A G +E
Sbjct: 120 AAREGHLE 127
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 85/193 (44%), Gaps = 56/193 (29%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
AA G+ +E+ L M ++ +DK+G TPLHLA
Sbjct: 21 AARAGQDDEVRIL--MANGADVNAKDKDGYTPLHLA------------------------ 54
Query: 265 XXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV 324
A G +VE+L++ GAD KD G + +A +GH+E++EVL +
Sbjct: 55 ---------AREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA--- 102
Query: 325 LTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDN 384
GA N D+ G TPLH+AA +GH +V +L++ GADV QD
Sbjct: 103 ------------------GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 144
Query: 385 EGHAPLHLAVEGG 397
G ++++ G
Sbjct: 145 FGKTAFDISIDNG 157
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
G+ +L AAR GA N D+ G TPLH+AA +GH +V +L++ GADV
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 74
Query: 381 CQDNEGHAPLHLAVEGGRVE 400
+D +G+ PLHLA G +E
Sbjct: 75 AKDKDGYTPLHLAAREGHLE 94
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 6/150 (4%)
Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRD 230
A +D V +L+ G + + V GW+ LH+AA FG E + L +K ++ D
Sbjct: 24 AGQDDEVRILMANGADVNASDHV----GWTPLHLAAYFGHLEIVEVL--LKNGADVNADD 77
Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA 290
G TPLHLA ++ + +VLL++ T LH AA G +VE+L++ GA
Sbjct: 78 SLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGA 137
Query: 291 DPTIKDDRGRSCFDVARDKGHIEVLEVLQR 320
D +D G++ FD++ D G+ ++ E+LQ+
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 65/131 (49%), Gaps = 21/131 (16%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
T LH AA G +VE+L++ GAD D G + +A D+GH+EV+EVL +
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLK------- 101
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
GA N D G TPLH+AA GH +V +L++ GADV QD G
Sbjct: 102 --------------NGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGK 147
Query: 388 APLHLAVEGGR 398
++++ G
Sbjct: 148 TAFDISIDNGN 158
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 62/128 (48%), Gaps = 21/128 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
AA G V +L+ GAD D G + +A GH+E++EVL +
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLK------------ 68
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
GA N D G+TPLH+AA +GH VV +L++ GADV D+ G PLHL
Sbjct: 69 ---------NGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHL 119
Query: 393 AVEGGRVE 400
A G +E
Sbjct: 120 AANIGHLE 127
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 43/80 (53%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
G+ +L AAR GA N D G TPLH+AA GH +V +L++ GADV
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN 74
Query: 381 CQDNEGHAPLHLAVEGGRVE 400
D+ G PLHLA + G +E
Sbjct: 75 ADDSLGVTPLHLAADRGHLE 94
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 74/168 (44%), Gaps = 23/168 (13%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
AA G+ +E+ L M ++ D G TPLHLA + +VLL++
Sbjct: 21 AARAGQDDEVRIL--MANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDS 78
Query: 265 XXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV 324
T LH AA G +VE+L++ GAD D G + +A + GH+E++EVL +
Sbjct: 79 LGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLK---- 134
Query: 325 LTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLL 372
GA N D++G T I+ G++ + +L
Sbjct: 135 -----------------HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 70/137 (51%), Gaps = 22/137 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
AA G V +L+ GAD D+ G + +A GH+E++EVL +
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLK------------ 68
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
GA N D G+TPLH+AA GH +V +L++ GADV DN+GH PLHL
Sbjct: 69 ---------NGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHL 119
Query: 393 AVEGGRVEPLLFIWLKQ 409
A + G +E ++ + LK
Sbjct: 120 AAKYGHLE-IVEVLLKH 135
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 6/149 (4%)
Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRD 230
A +D V +L+ G + DG++ LH+AA+ G E + V +K ++ D
Sbjct: 24 AGQDDEVRILMANGADV----NATDNDGYTPLHLAASNGHLEIVE--VLLKNGADVNASD 77
Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA 290
G TPLHLA + +VLL+ T LH AA G +VE+L++ GA
Sbjct: 78 LTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA 137
Query: 291 DPTIKDDRGRSCFDVARDKGHIEVLEVLQ 319
D +D G++ FD++ D G+ ++ E+LQ
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 65/131 (49%), Gaps = 21/131 (16%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
T LH AA+NG +VE+L++ GAD D G + +A GH+E++EVL +
Sbjct: 49 TPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLK------- 101
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
GA N D G TPLH+AA GH +V +L++ GADV QD G
Sbjct: 102 --------------HGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGK 147
Query: 388 APLHLAVEGGR 398
++++ G
Sbjct: 148 TAFDISIDNGN 158
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 23/168 (13%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
AA G+ +E+ L M ++ D +G TPLHLA + + +VLL++
Sbjct: 21 AARAGQDDEVRIL--MANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDL 78
Query: 265 XXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV 324
T LH AAA G +VE+L++ GAD D+ G + +A GH+E++EVL +
Sbjct: 79 TGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLK---- 134
Query: 325 LTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLL 372
GA N D++G T I+ G++ + +L
Sbjct: 135 -----------------HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
G+ +L AAR GA N D G TPLH+AA GH +V +L++ GADV
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVN 74
Query: 381 CQDNEGHAPLHLAVEGGRVEPLLFIWLKQ 409
D G PLHLA G +E ++ + LK
Sbjct: 75 ASDLTGITPLHLAAATGHLE-IVEVLLKH 102
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 79/150 (52%), Gaps = 6/150 (4%)
Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRD 230
A +D V +L+ G D + GW+ LH+AA FG E + L +K ++ +D
Sbjct: 24 AGQDDEVRILMANG----ADVNARDFTGWTPLHLAAHFGHLEIVEVL--LKNGADVNAKD 77
Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA 290
G TPLHLA + + +VLL++ T LH AA G +VE+L++ GA
Sbjct: 78 SLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGA 137
Query: 291 DPTIKDDRGRSCFDVARDKGHIEVLEVLQR 320
D +D G++ FD++ D G+ ++ E+LQ+
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 64/128 (50%), Gaps = 21/128 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
AA G V +L+ GAD +D G + +A GH+E++EVL +
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLK------------ 68
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
GA N D G+TPLH+AA +GH +V +L++ GADV D+ G PLHL
Sbjct: 69 ---------NGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHL 119
Query: 393 AVEGGRVE 400
A + G +E
Sbjct: 120 AAKRGHLE 127
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 23/168 (13%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
AA G+ +E+ L M ++ RD G TPLHLA + + +VLL++
Sbjct: 21 AARAGQDDEVRIL--MANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDS 78
Query: 265 XXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV 324
T LH AA G +VE+L++ GAD D G + +A +GH+E++EVL +
Sbjct: 79 LGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLK---- 134
Query: 325 LTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLL 372
GA N D++G T I+ G++ + +L
Sbjct: 135 -----------------NGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 43/80 (53%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
G+ +L AAR GA N D G TPLH+AA GH +V +L++ GADV
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVN 74
Query: 381 CQDNEGHAPLHLAVEGGRVE 400
+D+ G PLHLA G +E
Sbjct: 75 AKDSLGVTPLHLAARRGHLE 94
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 75/143 (52%), Gaps = 23/143 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
AA G V +L+ GAD +DD G++ +A KGH+E++EVL +
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLK------------ 68
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
GA N D+ G TPLH+AA+ GH +V +L++ GADV D G PLHL
Sbjct: 69 ---------HGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHL 119
Query: 393 AVEGGRVEPLLFIWLKQWGTMVS 415
A + G +E ++ + LK +G V+
Sbjct: 120 AADAGHLE-IVEVLLK-YGADVN 140
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 65/131 (49%), Gaps = 21/131 (16%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
T LH AA G +VE+L++ GAD D G + +A GH+E++EVL +
Sbjct: 49 TPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLK------- 101
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
GA N D YG TPLH+AA GH +V +L+++GADV QD G
Sbjct: 102 --------------NGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 388 APLHLAVEGGR 398
++++ G
Sbjct: 148 TAFDISIDNGN 158
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 76/150 (50%), Gaps = 6/150 (4%)
Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRD 230
A +D V +L+ G + + G + LH+AA G E + V +K ++ D
Sbjct: 24 AGQDDEVRILMANGADV----NAEDDSGKTPLHLAAIKGHLEIVE--VLLKHGADVNAAD 77
Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA 290
K G TPLHLA + +VLL++ T LH AA G +VE+L++ GA
Sbjct: 78 KMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGA 137
Query: 291 DPTIKDDRGRSCFDVARDKGHIEVLEVLQR 320
D +D G++ FD++ D G+ ++ E+LQ+
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 23/168 (13%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
AA G+ +E+ L M ++ D G+TPLHLA K + +VLL+
Sbjct: 21 AARAGQDDEVRIL--MANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADK 78
Query: 265 XXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV 324
T LH AA G +VE+L++ GAD D G + +A D GH+E++EVL +
Sbjct: 79 MGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLK---- 134
Query: 325 LTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLL 372
GA N D++G T I+ G++ + +L
Sbjct: 135 -----------------YGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 43/80 (53%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
G+ +L AAR GA N D G TPLH+AAIKGH +V +L++ GADV
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN 74
Query: 381 CQDNEGHAPLHLAVEGGRVE 400
D G PLHLA G +E
Sbjct: 75 AADKMGDTPLHLAALYGHLE 94
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 68/131 (51%), Gaps = 21/131 (16%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
T LH AA G +VE+L++ GAD +D G + +A D GH+E++EVL +
Sbjct: 49 TPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLK------- 101
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
GA N D YGLTPLH+AA +GH +V +L++ GADV QD G
Sbjct: 102 --------------YGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGK 147
Query: 388 APLHLAVEGGR 398
++++ G
Sbjct: 148 TAFDISIDNGN 158
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 76/150 (50%), Gaps = 6/150 (4%)
Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRD 230
A +D V +L+ G + G + LH+AA G E + L +K ++ RD
Sbjct: 24 AGQDDEVRILMANGADV----NAHDDQGSTPLHLAAWIGHPEIVEVL--LKHGADVNARD 77
Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA 290
+G TPLHLA + + +VLL+ T LH AA G +VE+L++ GA
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGA 137
Query: 291 DPTIKDDRGRSCFDVARDKGHIEVLEVLQR 320
D +D G++ FD++ D G+ ++ E+LQ+
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 63/128 (49%), Gaps = 21/128 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
AA G V +L+ GAD DD+G + +A GH E++EVL +
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLK------------ 68
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
GA N D G TPLH+AA GH +V +L+++GADV QD G PLHL
Sbjct: 69 ---------HGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHL 119
Query: 393 AVEGGRVE 400
A + G +E
Sbjct: 120 AADRGHLE 127
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 23/168 (13%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
AA G+ +E+ L M ++ D +G TPLHLA +VLL+
Sbjct: 21 AARAGQDDEVRIL--MANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDT 78
Query: 265 XXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV 324
T LH AA NG +VE+L++ GAD +D G + +A D+GH+E++EVL +
Sbjct: 79 DGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLK---- 134
Query: 325 LTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLL 372
GA N D++G T I+ G++ + +L
Sbjct: 135 -----------------HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 44/80 (55%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
G+ +L AAR GA N D G TPLH+AA GH +V +L++ GADV
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVN 74
Query: 381 CQDNEGHAPLHLAVEGGRVE 400
+D +G PLHLA + G +E
Sbjct: 75 ARDTDGWTPLHLAADNGHLE 94
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 66/131 (50%), Gaps = 21/131 (16%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
T LH AA G +VE+L++ GAD D+ G + +A D GH+E++EVL +
Sbjct: 49 TPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLK------- 101
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
GA N D G TPLH+AA GH +V +L+++GADV QD G
Sbjct: 102 --------------HGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 388 APLHLAVEGGR 398
++++ G
Sbjct: 148 TAFDISIDNGN 158
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 62/128 (48%), Gaps = 21/128 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
AA G V +L+ GAD D G + +A GH+E++EVL +
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLK------------ 68
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
GA N D YG TPLH+AA GH +V +L++ GADV +D EG PLHL
Sbjct: 69 ---------YGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHL 119
Query: 393 AVEGGRVE 400
A G +E
Sbjct: 120 AAYDGHLE 127
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 77/150 (51%), Gaps = 6/150 (4%)
Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRD 230
A +D V +L+ G + + + G + LH+AA G E + L++ ++ D
Sbjct: 24 AGQDDEVRILMANGADVNATDWL----GHTPLHLAAKTGHLEIVEVLLKYGA--DVNAWD 77
Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA 290
G TPLHLA + + +VLL+ T LH AA +G +VE+L++ GA
Sbjct: 78 NYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA 137
Query: 291 DPTIKDDRGRSCFDVARDKGHIEVLEVLQR 320
D +D G++ FD++ D G+ ++ E+LQ+
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 44/80 (55%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
G+ +L AAR GA N D G TPLH+AA GH +V +L+++GADV
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN 74
Query: 381 CQDNEGHAPLHLAVEGGRVE 400
DN G PLHLA + G +E
Sbjct: 75 AWDNYGATPLHLAADNGHLE 94
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 74/168 (44%), Gaps = 23/168 (13%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
AA G+ +E+ L M ++ D G TPLHLA + +VLL+
Sbjct: 21 AARAGQDDEVRIL--MANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDN 78
Query: 265 XXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV 324
T LH AA NG +VE+L++ GAD KD G + +A GH+E++EVL +
Sbjct: 79 YGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLK---- 134
Query: 325 LTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLL 372
GA N D++G T I+ G++ + +L
Sbjct: 135 -----------------YGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 6/150 (4%)
Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRD 230
A +D V +L+ G + + V GW+ LH+AA +G E + L +K ++ D
Sbjct: 24 AGRDDEVRILMANGADVNAADVV----GWTPLHLAAYWGHLEIVEVL--LKNGADVNAYD 77
Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA 290
G TPLHLA + + +VLL++ T LH AA G +VE+L++ GA
Sbjct: 78 TLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGA 137
Query: 291 DPTIKDDRGRSCFDVARDKGHIEVLEVLQR 320
D +D G++ FD++ + G+ ++ E+LQ+
Sbjct: 138 DVNAQDKFGKTAFDISINNGNEDLAEILQK 167
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 65/131 (49%), Gaps = 21/131 (16%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
T LH AA G +VE+L++ GAD D G + +A GH+E++EVL +
Sbjct: 49 TPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLK------- 101
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
GA N D G+TPLH+AA +GH +V +L+++GADV QD G
Sbjct: 102 --------------NGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 388 APLHLAVEGGR 398
+++ G
Sbjct: 148 TAFDISINNGN 158
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 23/168 (13%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
AA GR +E+ L M ++ D G TPLHLA + +VLL++
Sbjct: 21 AARAGRDDEVRIL--MANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDT 78
Query: 265 XXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV 324
T LH AA G +VE+L++ GAD KDD G + +A ++GH+E++EVL +
Sbjct: 79 LGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLK---- 134
Query: 325 LTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLL 372
GA N D++G T I+ G++ + +L
Sbjct: 135 -----------------YGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 61/128 (47%), Gaps = 21/128 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
AA G V +L+ GAD D G + +A GH+E++EVL +
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLK------------ 68
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
GA N D G TPLH+AA GH +V +L++ GADV +D+ G PLHL
Sbjct: 69 ---------NGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHL 119
Query: 393 AVEGGRVE 400
A G +E
Sbjct: 120 AANRGHLE 127
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 41/80 (51%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
G+ +L AAR GA N D G TPLH+AA GH +V +L++ GADV
Sbjct: 15 GKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVN 74
Query: 381 CQDNEGHAPLHLAVEGGRVE 400
D G PLHLA G +E
Sbjct: 75 AYDTLGSTPLHLAAHFGHLE 94
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 73/143 (51%), Gaps = 23/143 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
AA G V +LI GAD D+ G + +A GH+E++EVL +
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLK------------ 68
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
GA + D YG TPLH+AA+ GH +V +L+++GADV D G PLHL
Sbjct: 69 ---------HGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHL 119
Query: 393 AVEGGRVEPLLFIWLKQWGTMVS 415
A + G +E ++ + LK +G V+
Sbjct: 120 AADEGHLE-IVEVLLK-YGADVN 140
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 66/131 (50%), Gaps = 21/131 (16%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
T LH AA +G +VE+L++ GAD D G + +A GH+E++EVL +
Sbjct: 49 TPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLK------- 101
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
GA N D G TPLH+AA +GH +V +L+++GADV QD G
Sbjct: 102 --------------YGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 388 APLHLAVEGGR 398
++++ G
Sbjct: 148 TAFDISIDNGN 158
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
G+ +L AAR GA N D GLTPLH+AA+ GH +V +L++ GADV+
Sbjct: 15 GKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD 74
Query: 381 CQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMVS 415
D G PLHLA G +E ++ + LK +G V+
Sbjct: 75 AADVYGFTPLHLAAMTGHLE-IVEVLLK-YGADVN 107
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 23/162 (14%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
AA G+ +E+ L+ ++ D G TPLHLA + +VLL+
Sbjct: 21 AARAGQDDEVRILI--ANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADV 78
Query: 265 XXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV 324
T LH AA G +VE+L++ GAD D G + +A D+GH+E++EVL +
Sbjct: 79 YGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLK---- 134
Query: 325 LTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHK 366
GA N D++G T I+ G++
Sbjct: 135 -----------------YGADVNAQDKFGKTAFDISIDNGNE 159
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 64/128 (50%), Gaps = 21/128 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
AA G V +L+ GAD D G + + + GH+E++EVL +
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLK------------ 68
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
A N D+ G TPLH+AA +GH +V +L+++GADV D +G+ PLHL
Sbjct: 69 ---------YAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHL 119
Query: 393 AVEGGRVE 400
A E G +E
Sbjct: 120 AAEDGHLE 127
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 6/150 (4%)
Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRD 230
A +D V +L+ G + ++ G + LH+ G E I L +K ++ D
Sbjct: 24 AGQDDEVRILMANGADVNANDWF----GITPLHLVVNNGHLEIIEVL--LKYAADVNASD 77
Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA 290
K G TPLHLA + + +VLL+ T LH AA +G +VE+L++ GA
Sbjct: 78 KSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA 137
Query: 291 DPTIKDDRGRSCFDVARDKGHIEVLEVLQR 320
D +D G++ FD++ D G+ ++ E+LQ+
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 80/194 (41%), Gaps = 56/194 (28%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
AA G+ +E+ L M ++ D G TPLHL VN
Sbjct: 21 AARAGQDDEVRIL--MANGADVNANDWFGITPLHLVVN---------------------- 56
Query: 265 XXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV 324
NG ++E+L++ AD D G + +A +GH+E++EVL +
Sbjct: 57 -----------NGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLK---- 101
Query: 325 LTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDN 384
GA N D G TPLH+AA GH +V +L+++GADV QD
Sbjct: 102 -----------------YGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDK 144
Query: 385 EGHAPLHLAVEGGR 398
G ++++ G
Sbjct: 145 FGKTAFDISIDNGN 158
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
G+ +L AAR GA N D +G+TPLH+ GH ++ +L+++ ADV
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVN 74
Query: 381 CQDNEGHAPLHLAVEGGRVE 400
D G PLHLA G +E
Sbjct: 75 ASDKSGWTPLHLAAYRGHLE 94
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 62/128 (48%), Gaps = 21/128 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
AAA G V +L+ GAD DD G + +A G +E++EVL +
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLK------------ 60
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
GA N D G+TPLH+AA GH +V +L++ GADV D G PLHL
Sbjct: 61 ---------NGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHL 111
Query: 393 AVEGGRVE 400
A G++E
Sbjct: 112 AALSGQLE 119
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 82/194 (42%), Gaps = 56/194 (28%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
AAA G+ +E+ L M ++ D G TPLHLA
Sbjct: 13 AAAAGQDDEVRIL--MANGADVNATDDNGLTPLHLA------------------------ 46
Query: 265 XXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV 324
AANG +VE+L++ GAD D G + +A GH+E++EVL +
Sbjct: 47 ---------AANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLK---- 93
Query: 325 LTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDN 384
GA N D+ G TPLH+AA+ G +V +L++ GADV QD
Sbjct: 94 -----------------HGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDA 136
Query: 385 EGHAPLHLAVEGGR 398
G +++ G+
Sbjct: 137 LGLTAFDISINQGQ 150
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 76/150 (50%), Gaps = 6/150 (4%)
Query: 170 AANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCR 229
AA +D V +L+ G D +G + LH+AAA G+ E + V +K ++
Sbjct: 15 AAGQDDEVRILMANG----ADVNATDDNGLTPLHLAAANGQLEIVE--VLLKNGADVNAS 68
Query: 230 DKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMG 289
D G TPLHLA + +VLL+ T LH AA +G +VE+L++ G
Sbjct: 69 DSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHG 128
Query: 290 ADPTIKDDRGRSCFDVARDKGHIEVLEVLQ 319
AD +D G + FD++ ++G ++ E+LQ
Sbjct: 129 ADVNAQDALGLTAFDISINQGQEDLAEILQ 158
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 63/128 (49%), Gaps = 21/128 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
AA G V +L+ GAD +D G + +A GH+E++EVL +
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK------------ 68
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
GA N D G+TPL +AA+ GH +V +L++ GADV D EGH PLHL
Sbjct: 69 ---------NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHL 119
Query: 393 AVEGGRVE 400
A G +E
Sbjct: 120 AAMFGHLE 127
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 65/131 (49%), Gaps = 21/131 (16%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
T LH AA NG +VE+L++ GAD D G + +A GH+E++EVL +
Sbjct: 49 TPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLK------- 101
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
GA N D G TPLH+AA+ GH +V +L++ GADV QD G
Sbjct: 102 --------------NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGK 147
Query: 388 APLHLAVEGGR 398
++++ G
Sbjct: 148 TAFDISIDNGN 158
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 6/150 (4%)
Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRD 230
A +D V +L+ G + ++ GW+ LH+AA G E + L +K ++ D
Sbjct: 24 AGRDDEVRILMANGADVNAED----ASGWTPLHLAAFNGHLEIVEVL--LKNGADVNAVD 77
Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA 290
G TPL LA + +VLL++ T LH AA G +VE+L++ GA
Sbjct: 78 HAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA 137
Query: 291 DPTIKDDRGRSCFDVARDKGHIEVLEVLQR 320
D +D G++ FD++ D G+ ++ E+LQ+
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 23/168 (13%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
AA GR +E+ L M ++ D G TPLHLA + +VLL++
Sbjct: 21 AARAGRDDEVRIL--MANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDH 78
Query: 265 XXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV 324
T L AA G +VE+L++ GAD D G + +A GH+E++EVL +
Sbjct: 79 AGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK---- 134
Query: 325 LTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLL 372
GA N D++G T I+ G++ + +L
Sbjct: 135 -----------------NGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 41/80 (51%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
G+ +L AAR GA N D G TPLH+AA GH +V +L++ GADV
Sbjct: 15 GKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN 74
Query: 381 CQDNEGHAPLHLAVEGGRVE 400
D+ G PL LA G +E
Sbjct: 75 AVDHAGMTPLRLAALFGHLE 94
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 62/128 (48%), Gaps = 21/128 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
AA G V +L+ GAD D GR+ +A GH+E++EVL R
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLR------------ 56
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
GA N D G TPLH+AA GH +V +L+++GADV +D G PL+L
Sbjct: 57 ---------NGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYL 107
Query: 393 AVEGGRVE 400
A G +E
Sbjct: 108 AAYWGHLE 115
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 64/131 (48%), Gaps = 21/131 (16%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
T LH AAA G +VE+L+ GAD D G + +A GH+E++EVL +
Sbjct: 37 TPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLK------- 89
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
GA N D G+TPL++AA GH +V +L++ GADV QD G
Sbjct: 90 --------------YGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGK 135
Query: 388 APLHLAVEGGR 398
++++ G
Sbjct: 136 TAFDISIDIGN 146
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRD 230
A +D V +L+ G D G + LH+AAA G E + L+R ++ D
Sbjct: 12 AGQDDEVRILMANG----ADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGA--DVNAVD 65
Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA 290
G TPLHLA + + +VLL+ T L+ AA G +VE+L++ GA
Sbjct: 66 TNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGA 125
Query: 291 DPTIKDDRGRSCFDVARDKGHIEVLEVLQ 319
D +D G++ FD++ D G+ ++ E+LQ
Sbjct: 126 DVNAQDKFGKTAFDISIDIGNEDLAEILQ 154
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 41/80 (51%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
G+ +L AAR GA N D YG TPLH+AA GH +V +L+ GADV
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN 62
Query: 381 CQDNEGHAPLHLAVEGGRVE 400
D G PLHLA G +E
Sbjct: 63 AVDTNGTTPLHLAASLGHLE 82
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 68/156 (43%), Gaps = 23/156 (14%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
AA G+ +E+ L M + D GRTPLH+A + +VLL +
Sbjct: 9 AARAGQDDEVRIL--MANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDT 66
Query: 265 XXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV 324
T LH AA+ G +VE+L++ GAD KD G + +A GH+E++EVL +
Sbjct: 67 NGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLK---- 122
Query: 325 LTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIA 360
GA N D++G T I+
Sbjct: 123 -----------------HGADVNAQDKFGKTAFDIS 141
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 64/128 (50%), Gaps = 21/128 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
AA G V +L+ GAD D+ G + +A GH+E++EVL +
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLK------------ 68
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
GA + D +G TPLH+AA GH +V +L++ GADV D++G PLHL
Sbjct: 69 ---------HGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHL 119
Query: 393 AVEGGRVE 400
A + G +E
Sbjct: 120 AAKWGYLE 127
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 75/150 (50%), Gaps = 6/150 (4%)
Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRD 230
A +D V +L+ G + + T + LH+AA G E + V +K +D D
Sbjct: 24 AGQDDEVRILMANGADVNAADNTGT----TPLHLAAYSGHLEIVE--VLLKHGADVDASD 77
Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA 290
G TPLHLA + +VLL++ T LH AA G +VE+L++ GA
Sbjct: 78 VFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGA 137
Query: 291 DPTIKDDRGRSCFDVARDKGHIEVLEVLQR 320
D +D G++ FD++ D G+ ++ E+LQ+
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 21/149 (14%)
Query: 250 KVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDK 309
++L+ + T LH AA +G +VE+L++ GAD D G + +A
Sbjct: 31 RILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYW 90
Query: 310 GHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVV 369
GH+E++EVL + GA N D G+TPLH+AA G+ +V
Sbjct: 91 GHLEIVEVLLK---------------------NGADVNAMDSDGMTPLHLAAKWGYLEIV 129
Query: 370 LLLIEFGADVECQDNEGHAPLHLAVEGGR 398
+L++ GADV QD G ++++ G
Sbjct: 130 EVLLKHGADVNAQDKFGKTAFDISIDNGN 158
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 42/80 (52%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
G +L AAR GA N D G TPLH+AA GH +V +L++ GADV+
Sbjct: 15 GRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD 74
Query: 381 CQDNEGHAPLHLAVEGGRVE 400
D G+ PLHLA G +E
Sbjct: 75 ASDVFGYTPLHLAAYWGHLE 94
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 23/168 (13%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
AA G+ +E+ L M ++ D G TPLHLA + +VLL+
Sbjct: 21 AARAGQDDEVRIL--MANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDV 78
Query: 265 XXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV 324
T LH AA G +VE+L++ GAD D G + +A G++E++EVL +
Sbjct: 79 FGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLK---- 134
Query: 325 LTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLL 372
GA N D++G T I+ G++ + +L
Sbjct: 135 -----------------HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 65/131 (49%), Gaps = 21/131 (16%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
T LH AA G +VE+L++ GAD D G + +A GH+E++EVL +
Sbjct: 49 TPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLK------- 101
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
GA N D +G TPLH+AAI GH +V +L++ GADV QD G
Sbjct: 102 --------------HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGK 147
Query: 388 APLHLAVEGGR 398
++++ G
Sbjct: 148 TAFDISIDNGN 158
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 6/150 (4%)
Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRD 230
A +D V +L+ G D G + LH+AA +G E + V +K ++ D
Sbjct: 24 AGQDDEVRILMANG----ADVNATDASGLTPLHLAATYGHLEIVE--VLLKHGADVNAID 77
Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA 290
G TPLHLA + +VLL+ T LH AA G +VE+L++ GA
Sbjct: 78 IXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Query: 291 DPTIKDDRGRSCFDVARDKGHIEVLEVLQR 320
D +D G++ FD++ D G+ ++ E+LQ+
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 60/128 (46%), Gaps = 21/128 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
AA G V +L+ GAD D G + +A GH+E++EVL +
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLK------------ 68
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
GA N D G TPLH+AA+ GH +V +L++ GADV D G PLHL
Sbjct: 69 ---------HGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHL 119
Query: 393 AVEGGRVE 400
A G +E
Sbjct: 120 AAIMGHLE 127
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 42/80 (52%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
G+ +L AAR GA N D GLTPLH+AA GH +V +L++ GADV
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
Query: 381 CQDNEGHAPLHLAVEGGRVE 400
D G PLHLA G +E
Sbjct: 75 AIDIXGSTPLHLAALIGHLE 94
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 73/168 (43%), Gaps = 23/168 (13%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
AA G+ +E+ L M ++ D G TPLHLA + +VLL+
Sbjct: 21 AARAGQDDEVRIL--MANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI 78
Query: 265 XXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV 324
T LH AA G +VE+L++ GAD D G + +A GH+E++EVL +
Sbjct: 79 XGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK---- 134
Query: 325 LTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLL 372
GA N D++G T I+ G++ + +L
Sbjct: 135 -----------------HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 72/143 (50%), Gaps = 23/143 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
AA G V +L+ GAD +D G + +A GH+E++EVL +
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLK------------ 68
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
GA N D G TPLH+AA +GH +V +L+++GADV D G PLHL
Sbjct: 69 ---------NGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHL 119
Query: 393 AVEGGRVEPLLFIWLKQWGTMVS 415
A + G +E ++ + LK +G V+
Sbjct: 120 AADTGHLE-IVEVLLK-YGADVN 140
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 65/131 (49%), Gaps = 21/131 (16%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
T LH AA G +VE+L++ GAD D G + +A +GH+E++EVL +
Sbjct: 49 TPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLK------- 101
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
GA N D G TPLH+AA GH +V +L+++GADV QD G
Sbjct: 102 --------------YGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 388 APLHLAVEGGR 398
++++ G
Sbjct: 148 TAFDISIDNGN 158
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 6/149 (4%)
Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRD 230
A +D V +L+ G + ++ G + LH+AA G E + L +K ++ D
Sbjct: 24 AGQDDEVRILMANGADVNAEDTY----GDTPLHLAARVGHLEIVEVL--LKNGADVNALD 77
Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA 290
G TPLHLA + + +VLL+ T LH AA G +VE+L++ GA
Sbjct: 78 FSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGA 137
Query: 291 DPTIKDDRGRSCFDVARDKGHIEVLEVLQ 319
D +D G++ FD++ D G+ ++ E+LQ
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 23/168 (13%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
AA G+ +E+ L M ++ D G TPLHLA + +VLL++
Sbjct: 21 AARAGQDDEVRIL--MANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDF 78
Query: 265 XXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV 324
T LH AA G +VE+L++ GAD D G + +A D GH+E++EVL +
Sbjct: 79 SGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLK---- 134
Query: 325 LTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLL 372
GA N D++G T I+ G++ + +L
Sbjct: 135 -----------------YGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
G+ +L AAR GA N D YG TPLH+AA GH +V +L++ GADV
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVN 74
Query: 381 CQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMVS 415
D G PLHLA + G +E ++ + LK +G V+
Sbjct: 75 ALDFSGSTPLHLAAKRGHLE-IVEVLLK-YGADVN 107
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 65/131 (49%), Gaps = 21/131 (16%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
T LH AA G +VE+L++ GAD D G + +A GH+E++EVL +
Sbjct: 49 TPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLK------- 101
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
GA N D +G TPLH+AAI GH +V +L++ GADV QD G
Sbjct: 102 --------------HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGK 147
Query: 388 APLHLAVEGGR 398
++++ G
Sbjct: 148 TAFDISIDNGN 158
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 6/150 (4%)
Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRD 230
A +D V +L+ G D G + LH+AA +G E + V +K ++ D
Sbjct: 24 AGQDDEVRILMANG----ADVNATDASGLTPLHLAATYGHLEIVE--VLLKHGADVNAID 77
Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA 290
G TPLHLA + +VLL+ T LH AA G +VE+L++ GA
Sbjct: 78 IMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Query: 291 DPTIKDDRGRSCFDVARDKGHIEVLEVLQR 320
D +D G++ FD++ D G+ ++ E+LQ+
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 60/128 (46%), Gaps = 21/128 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
AA G V +L+ GAD D G + +A GH+E++EVL +
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLK------------ 68
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
GA N D G TPLH+AA+ GH +V +L++ GADV D G PLHL
Sbjct: 69 ---------HGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHL 119
Query: 393 AVEGGRVE 400
A G +E
Sbjct: 120 AAIMGHLE 127
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 42/80 (52%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
G+ +L AAR GA N D GLTPLH+AA GH +V +L++ GADV
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
Query: 381 CQDNEGHAPLHLAVEGGRVE 400
D G PLHLA G +E
Sbjct: 75 AIDIMGSTPLHLAALIGHLE 94
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 69/162 (42%), Gaps = 23/162 (14%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
AA G+ +E+ L M ++ D G TPLHLA + +VLL+
Sbjct: 21 AARAGQDDEVRIL--MANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI 78
Query: 265 XXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV 324
T LH AA G +VE+L++ GAD D G + +A GH+E++EVL +
Sbjct: 79 MGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK---- 134
Query: 325 LTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHK 366
GA N D++G T I+ G++
Sbjct: 135 -----------------HGADVNAQDKFGKTAFDISIDNGNE 159
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 21/117 (17%)
Query: 282 VEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXD 341
V +L+ GAD DD G + +A +GH+E++EVL +
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK--------------------- 68
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGR 398
GA N D +G TPLH+AA GH +V +L+E+GADV QD G ++++ G
Sbjct: 69 HGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGN 125
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 209 GRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXT 268
G+ +E+ L M ++ D G TPLHLA + + +VLL+ T
Sbjct: 25 GQDDEVRIL--MANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRT 82
Query: 269 SLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQR 320
LH AA G +VE+L+E GAD +D G++ FD++ D G+ ++ E+LQ+
Sbjct: 83 PLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 43/80 (53%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
G+ +L A R GA N D G+TPLH+AA +GH +V +L++ GADV
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 381 CQDNEGHAPLHLAVEGGRVE 400
D+ G PLHLA G +E
Sbjct: 75 ASDSWGRTPLHLAATVGHLE 94
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 69.7 bits (169), Expect = 3e-12, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 61/128 (47%), Gaps = 21/128 (16%)
Query: 270 LHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAAR 329
L A G V +L+ GAD DD G + +A +GH+E++EVL +
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK--------- 68
Query: 330 RXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAP 389
GA N D +G TPLH+AA GH +V +L+E+GADV QD G
Sbjct: 69 ------------HGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTA 116
Query: 390 LHLAVEGG 397
++++ G
Sbjct: 117 FDISIDNG 124
Score = 62.4 bits (150), Expect = 4e-10, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
A G+ +E+ L M ++ D G TPLHLA + + +VLL+
Sbjct: 21 ATRAGQDDEVRIL--MANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDI 78
Query: 265 XXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQR 320
T LH AA G +VE+L+E GAD +D G++ FD++ D G+ ++ E+LQ+
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 60.1 bits (144), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/80 (40%), Positives = 42/80 (52%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
G+ +L A R GA N D G+TPLH+AA +GH +V +L++ GADV
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 381 CQDNEGHAPLHLAVEGGRVE 400
D G PLHLA G +E
Sbjct: 75 ASDIWGRTPLHLAATVGHLE 94
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 68.9 bits (167), Expect = 4e-12, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 21/128 (16%)
Query: 270 LHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAAR 329
L AA G V +L+ GAD D+ G + +A GH+E++EVL +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLK--------- 68
Query: 330 RXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAP 389
GA N D +G+TPLH+AAI+GH +V +L++ GADV QD G
Sbjct: 69 ------------YGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTA 116
Query: 390 LHLAVEGG 397
++++ G
Sbjct: 117 FDISIDNG 124
Score = 65.5 bits (158), Expect = 5e-11, Method: Composition-based stats.
Identities = 35/80 (43%), Positives = 46/80 (57%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
G+ +L AAR GA N D+ GLTPLH+AA GH +V +L+++GADV
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN 74
Query: 381 CQDNEGHAPLHLAVEGGRVE 400
+DN G PLHLA G +E
Sbjct: 75 AEDNFGITPLHLAAIRGHLE 94
Score = 62.0 bits (149), Expect = 6e-10, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
AA G+ +E+ L M ++ D++G TPLHLA + +VLL+
Sbjct: 21 AARAGQDDEVRIL--MANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDN 78
Query: 265 XXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQR 320
T LH AA G +VE+L++ GAD +D G++ FD++ D G+ ++ E+LQ+
Sbjct: 79 FGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 21/105 (20%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
T LH AA G +VE+L++ GAD +D+ G + +A +GH+E++EVL +
Sbjct: 49 TPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLK------- 101
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLL 372
GA N D++G T I+ G++ + +L
Sbjct: 102 --------------HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 68.6 bits (166), Expect = 6e-12, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 61/128 (47%), Gaps = 21/128 (16%)
Query: 270 LHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAAR 329
L A G V +L+ GAD DD G + +A +GH+E++EVL +
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK--------- 68
Query: 330 RXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAP 389
GA N D +G TPLH+AA GH +V +L+E+GADV QD G
Sbjct: 69 ------------HGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTA 116
Query: 390 LHLAVEGG 397
++++ G
Sbjct: 117 FDISIDNG 124
Score = 62.4 bits (150), Expect = 5e-10, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
A G+ +E+ L M ++ D G TPLHLA + + +VLL+
Sbjct: 21 ATRAGQDDEVRIL--MANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDI 78
Query: 265 XXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQR 320
T LH AA G +VE+L+E GAD +D G++ FD++ D G+ ++ E+LQ+
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/80 (40%), Positives = 43/80 (53%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
G+ +L A R GA N D G+TPLH+AA +GH +V +L++ GADV
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 381 CQDNEGHAPLHLAVEGGRVE 400
+D G PLHLA G +E
Sbjct: 75 ARDIWGRTPLHLAATVGHLE 94
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 72/150 (48%), Gaps = 12/150 (8%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVL--------- 318
T+LH A + G +VE L+++G KDD G S +A G E+++ L
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNA 101
Query: 319 --QRGEAVL-TAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEF 375
Q G L AA + + GA+ + D Y T +H AA KG+ +V +L+ +
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161
Query: 376 GADVECQDNEGHAPLHLAVEGGRVEPLLFI 405
A QD EG+ PLHLA + RVE F+
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVEEAKFL 191
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 6/144 (4%)
Query: 170 AANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCR 229
+A ++V LL+ G+ + K GWS LH+AA+ GR E + +L+ + ++
Sbjct: 49 SAGHTEIVEFLLQLGVPV----NDKDDAGWSPLHIAASAGRDEIVKALLVKGAH--VNAV 102
Query: 230 DKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMG 289
++ G TPLH A +K A +LLE T++H AAA G+ +MV +L+
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK 162
Query: 290 ADPTIKDDRGRSCFDVARDKGHIE 313
A I+D G + +A D+ +E
Sbjct: 163 ASTNIQDTEGNTPLHLACDEERVE 186
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 95/230 (41%), Gaps = 32/230 (13%)
Query: 176 MVSLLLRAGLSIEIDERV---------KTKDGWSELHVAAAFGRTEEISSLVRMKEYESL 226
M+ L +G E+ ER+ +D + LH A + G TE + L+++ +
Sbjct: 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV--PV 66
Query: 227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLI 286
+ +D G +PLH+A + K LL T LH AA+ + ML+
Sbjct: 67 NDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126
Query: 287 EMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGAST 346
E GA+P KD + A KG+++++ +L +A ST
Sbjct: 127 EGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA---------------------ST 165
Query: 347 NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEG 396
N D G TPLH+A + L+ GA + ++ E PL +A G
Sbjct: 166 NIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGG 215
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%)
Query: 350 DQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
DQ T LH A GH +V L++ G V +D+ G +PLH+A GR E
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDE 87
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 72/150 (48%), Gaps = 12/150 (8%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVL--------- 318
T+LH A + G +VE L+++G KDD G S +A G E+++ L
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA 101
Query: 319 --QRGEAVL-TAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEF 375
Q G L AA + + GA+ + D Y T +H AA KG+ +V +L+ +
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161
Query: 376 GADVECQDNEGHAPLHLAVEGGRVEPLLFI 405
A QD EG+ PLHLA + RVE F+
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVEEAKFL 191
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 170 AANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCR 229
+A ++V LL+ G+ + K GWS LH+AA+ G E + +L+ + ++
Sbjct: 49 SAGHTEIVEFLLQLGVPV----NDKDDAGWSPLHIAASAGXDEIVKALLVKGAH--VNAV 102
Query: 230 DKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMG 289
++ G TPLH A +K A +LLE T++H AAA G+ +MV +L+
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK 162
Query: 290 ADPTIKDDRGRSCFDVARDKGHIE 313
A I+D G + +A D+ +E
Sbjct: 163 ASTNIQDTEGNTPLHLACDEERVE 186
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 95/230 (41%), Gaps = 32/230 (13%)
Query: 176 MVSLLLRAGLSIEIDERV---------KTKDGWSELHVAAAFGRTEEISSLVRMKEYESL 226
M+ L +G E+ ER+ +D + LH A + G TE + L+++ +
Sbjct: 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV--PV 66
Query: 227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLI 286
+ +D G +PLH+A + K LL T LH AA+ + ML+
Sbjct: 67 NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126
Query: 287 EMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGAST 346
E GA+P KD + A KG+++++ +L +A ST
Sbjct: 127 EGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA---------------------ST 165
Query: 347 NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEG 396
N D G TPLH+A + L+ GA + ++ E PL +A G
Sbjct: 166 NIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGG 215
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 350 DQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
DQ T LH A GH +V L++ G V +D+ G +PLH+A G E
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDE 87
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 67.8 bits (164), Expect = 1e-11, Method: Composition-based stats.
Identities = 43/110 (39%), Positives = 57/110 (51%), Gaps = 21/110 (19%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
T LH AA NG +V++L+E GAD KD GR+ +A GH+EV+++L
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL--------- 54
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGA 377
+ GA N D+ G TPLH+AA GH VV LL+E GA
Sbjct: 55 ------------LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 65.5 bits (158), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/102 (38%), Positives = 51/102 (50%), Gaps = 21/102 (20%)
Query: 299 GRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLH 358
GR+ +A GH+EV+++L + GA N D+ G TPLH
Sbjct: 2 GRTPLHLAARNGHLEVVKLL---------------------LEAGADVNAKDKNGRTPLH 40
Query: 359 IAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
+AA GH VV LL+E GADV +D G PLHLA G +E
Sbjct: 41 LAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 82
Score = 63.9 bits (154), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/86 (40%), Positives = 48/86 (55%)
Query: 233 GRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADP 292
GRTPLHLA + K+LLE+ T LH AA NG +V++L+E GAD
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 293 TIKDDRGRSCFDVARDKGHIEVLEVL 318
KD GR+ +A GH+EV+++L
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 55.5 bits (132), Expect = 6e-08, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 197 DGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESX 256
+G + LH+AA G E + L ++ ++ +DK GRTPLHLA + K+LLE+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLL--LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 257 XXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA 290
T LH AA NG +V++L+E GA
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Query: 128 LRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSE--DMVSLLLRAGL 185
L A NG VK +L+ AG + R LAA + ++V LLL AG
Sbjct: 6 LHLAARNGHLEVVKLLLE------AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG- 58
Query: 186 SIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEY 223
D K K+G + LH+AA G E + L+ Y
Sbjct: 59 ---ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 6/149 (4%)
Query: 170 AANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCR 229
+A ++V LL+ G+ + K GWS LH+AA+ GR E + +L + + ++
Sbjct: 49 SAGHTEIVEFLLQLGVPV----NDKDDAGWSPLHIAASAGRDEIVKAL--LGKGAQVNAV 102
Query: 230 DKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMG 289
++ G TPLH A +K A +LLE T++H AAA G+ +M+ +L+
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYK 162
Query: 290 ADPTIKDDRGRSCFDVARDKGHIEVLEVL 318
A I+D G + +A D+ +E ++L
Sbjct: 163 ASTNIQDTEGNTPLHLACDEERVEEAKLL 191
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 70/145 (48%), Gaps = 12/145 (8%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVL--------- 318
T+LH A + G +VE L+++G KDD G S +A G E+++ L
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 101
Query: 319 --QRGEAVL-TAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEF 375
Q G L AA + + GA+ + D Y T +H AA KG+ ++ +L+ +
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY 161
Query: 376 GADVECQDNEGHAPLHLAVEGGRVE 400
A QD EG+ PLHLA + RVE
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVE 186
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 92/214 (42%), Gaps = 26/214 (12%)
Query: 186 SIEIDERVKTK---DGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVN 242
SI D+ + T+ D + LH A + G TE + L+++ ++ +D G +PLH+A +
Sbjct: 25 SILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV--PVNDKDDAGWSPLHIAAS 82
Query: 243 KTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSC 302
K LL T LH AA+ + ML+E GA+P KD +
Sbjct: 83 AGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATA 142
Query: 303 FDVARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAI 362
A KG+++++ +L +A STN D G TPLH+A
Sbjct: 143 MHRAAAKGNLKMIHILLYYKA---------------------STNIQDTEGNTPLHLACD 181
Query: 363 KGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEG 396
+ LL+ GA + ++ E PL +A G
Sbjct: 182 EERVEEAKLLVSQGASIYIENKEEKTPLQVAKGG 215
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%)
Query: 350 DQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
DQ T LH A GH +V L++ G V +D+ G +PLH+A GR E
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDE 87
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 6/149 (4%)
Query: 170 AANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCR 229
+A ++V LL+ G+ + K GWS LH+AA+ GR E + +L + + ++
Sbjct: 50 SAGHTEIVEFLLQLGVPV----NDKDDAGWSPLHIAASAGRDEIVKAL--LGKGAQVNAV 103
Query: 230 DKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMG 289
++ G TPLH A +K A +LLE T++H AAA G+ +M+ +L+
Sbjct: 104 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYK 163
Query: 290 ADPTIKDDRGRSCFDVARDKGHIEVLEVL 318
A I+D G + +A D+ +E ++L
Sbjct: 164 ASTNIQDTEGNTPLHLACDEERVEEAKLL 192
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 70/145 (48%), Gaps = 12/145 (8%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVL--------- 318
T+LH A + G +VE L+++G KDD G S +A G E+++ L
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 102
Query: 319 --QRGEAVL-TAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEF 375
Q G L AA + + GA+ + D Y T +H AA KG+ ++ +L+ +
Sbjct: 103 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY 162
Query: 376 GADVECQDNEGHAPLHLAVEGGRVE 400
A QD EG+ PLHLA + RVE
Sbjct: 163 KASTNIQDTEGNTPLHLACDEERVE 187
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 92/214 (42%), Gaps = 26/214 (12%)
Query: 186 SIEIDERVKTK---DGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVN 242
SI D+ + T+ D + LH A + G TE + L+++ ++ +D G +PLH+A +
Sbjct: 26 SILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV--PVNDKDDAGWSPLHIAAS 83
Query: 243 KTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSC 302
K LL T LH AA+ + ML+E GA+P KD +
Sbjct: 84 AGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATA 143
Query: 303 FDVARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAI 362
A KG+++++ +L +A STN D G TPLH+A
Sbjct: 144 MHRAAAKGNLKMIHILLYYKA---------------------STNIQDTEGNTPLHLACD 182
Query: 363 KGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEG 396
+ LL+ GA + ++ E PL +A G
Sbjct: 183 EERVEEAKLLVSQGASIYIENKEEKTPLQVAKGG 216
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%)
Query: 350 DQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
DQ T LH A GH +V L++ G V +D+ G +PLH+A GR E
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDE 88
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 7/149 (4%)
Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRD 230
A +D V +L+ G D G S LH+AA +G L+R S D R
Sbjct: 12 AGQDDEVRILMANGAPFTTDWL-----GTSPLHLAAQYGHFSTTEVLLRAGV--SRDART 64
Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA 290
K RTPLH+A ++ +VLL+ T+LH A + + +VE+LI+ GA
Sbjct: 65 KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA 124
Query: 291 DPTIKDDRGRSCFDVARDKGHIEVLEVLQ 319
D + ++ FD++ D G+ ++ E+LQ
Sbjct: 125 DVHTQSKFCKTAFDISIDNGNEDLAEILQ 153
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 21/128 (16%)
Query: 270 LHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAAR 329
LH AA G E+L+ G + R+ +A +GH ++EVL +
Sbjct: 38 LHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK--------- 88
Query: 330 RXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAP 389
GA N D +T LH A H+ VV LLI++GADV Q
Sbjct: 89 ------------HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTA 136
Query: 390 LHLAVEGG 397
++++ G
Sbjct: 137 FDISIDNG 144
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 53/128 (41%), Gaps = 22/128 (17%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
AA G V +L+ GA P D G S +A GH EVL R
Sbjct: 9 AARAGQDDEVRILMANGA-PFTTDWLGTSPLHLAAQYGHFSTTEVLLRA----------- 56
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
G S + + TPLH+AA +GH ++V +L++ GADV +D LH
Sbjct: 57 ----------GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHW 106
Query: 393 AVEGGRVE 400
A E E
Sbjct: 107 ATEHNHQE 114
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/128 (32%), Positives = 60/128 (46%), Gaps = 21/128 (16%)
Query: 270 LHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAAR 329
L AA G V +L+ GAD D +G + +A D H+E++EVL +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLK--------- 68
Query: 330 RXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAP 389
GA N D G TPLH+AA+ GH +V +L++ GADV QD G
Sbjct: 69 ------------HGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTA 116
Query: 390 LHLAVEGG 397
++++ G
Sbjct: 117 FDISIDNG 124
Score = 64.3 bits (155), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
AA G+ +E+ L M ++ D++G TPLHLA + + +VLL+
Sbjct: 21 AARAGQDDEVRIL--MANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDN 78
Query: 265 XXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQR 320
T LH AA G +VE+L++ GAD +D G++ FD++ D G+ ++ E+LQ+
Sbjct: 79 DGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 60.1 bits (144), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 43/80 (53%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
G+ +L AAR GA N D+ G TPLH+AA H +V +L++ GADV
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN 74
Query: 381 CQDNEGHAPLHLAVEGGRVE 400
DN+G PLHLA G +E
Sbjct: 75 AHDNDGSTPLHLAALFGHLE 94
Score = 38.1 bits (87), Expect = 0.008, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 21/105 (20%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
T LH AA +VE+L++ GAD D+ G + +A GH+E++EVL +
Sbjct: 49 TPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLK------- 101
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLL 372
GA N D++G T I+ G++ + +L
Sbjct: 102 --------------HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 33.9 bits (76), Expect = 0.16, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Query: 169 LAANSE--DMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESL 226
LAA+ + ++V +LL+ G + + DG + LH+AA FG E + L +K +
Sbjct: 53 LAADYDHLEIVEVLLKHGADVNAHD----NDGSTPLHLAALFGHLEIVEVL--LKHGADV 106
Query: 227 DCRDKEGRTPLHLAVNKTSIGCAKVL 252
+ +DK G+T ++++ + A++L
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 107/267 (40%), Gaps = 42/267 (15%)
Query: 170 AANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCR 229
+ N E +++LL ++ + K+ + LH+AA + R + L ++ + +
Sbjct: 34 SGNEEKLMALLTPLNVNCHASDGRKS----TPLHLAAGYNRVRIVQLL--LQHGADVHAK 87
Query: 230 DKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMG 289
DK G PLH A + ++LL+ T LH AA+ + +L+ G
Sbjct: 88 DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHG 147
Query: 290 ADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXX---------- 339
ADPT+ + G+S D+A E L +G ++L AAR
Sbjct: 148 ADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQ 207
Query: 340 --------------------------XDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLI 373
KGA+ N ++ +TPLH+AA + H V+ +L
Sbjct: 208 PQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLH 267
Query: 374 EFGADVECQDNEGHAPLHLAVEGGRVE 400
+ GA + D+ G LH A G ++
Sbjct: 268 KHGAKMNALDSLGQTALHRAALAGHLQ 294
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 24/114 (21%)
Query: 268 TSLHNAAAN---GDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV 324
T+LH A A+ +++ E+L+ GA+ K+ + VA ++ H +V+EVL +
Sbjct: 213 TALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHK---- 268
Query: 325 LTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGAD 378
GA N D G T LH AA+ GH LL+ +G+D
Sbjct: 269 -----------------HGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD 305
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 170 AANSEDMVSLLLRAGLSIEIDERVKTKDGWSELH--VAAAFGRTEEISSLVRMKEYESLD 227
AA D+ + + L++EI + + + LH VA+ + ++++ L+ +++ +++
Sbjct: 185 AAREADLAKV--KKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELL-LRKGANVN 241
Query: 228 CRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIE 287
++K+ TPLH+A + +VL + T+LH AA G + +L+
Sbjct: 242 EKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLS 301
Query: 288 MGADPTI 294
G+DP+I
Sbjct: 302 YGSDPSI 308
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 64.3 bits (155), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/128 (32%), Positives = 58/128 (45%), Gaps = 21/128 (16%)
Query: 270 LHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAAR 329
L AA G V +L+ GAD KD+ G + +A GH+E++EVL +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK--------- 68
Query: 330 RXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAP 389
GA N D G TPLH+AA GH + +L++ GADV QD G
Sbjct: 69 ------------NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTA 116
Query: 390 LHLAVEGG 397
+++ G
Sbjct: 117 FDISIGNG 124
Score = 59.7 bits (143), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 43/80 (53%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
G+ +L AAR GA N D+YGLTPL++A GH +V +L++ GADV
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN 74
Query: 381 CQDNEGHAPLHLAVEGGRVE 400
D G PLHLA G +E
Sbjct: 75 AVDAIGFTPLHLAAFIGHLE 94
Score = 55.8 bits (133), Expect = 5e-08, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
AA G+ +E+ L M ++ +D+ G TPL+LA + +VLL++
Sbjct: 21 AARAGQDDEVRIL--MANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDA 78
Query: 265 XXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQR 320
T LH AA G + E+L++ GAD +D G++ FD++ G+ ++ E+LQ+
Sbjct: 79 IGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134
Score = 36.2 bits (82), Expect = 0.034, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 21/105 (20%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
T L+ A A+G +VE+L++ GAD D G + +A GH+E+ EVL +
Sbjct: 49 TPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK------- 101
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLL 372
GA N D++G T I+ G++ + +L
Sbjct: 102 --------------HGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 95/235 (40%), Gaps = 39/235 (16%)
Query: 175 DMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGR 234
D+V LL G ++ E + GW+ LH A R + + L+R L R K G
Sbjct: 19 DLVQQLLEGGANVNFQEE---EGGWTPLHNAVQMSREDIVELLLRHGADPVL--RKKNGA 73
Query: 235 TPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTI 294
TP LA S+ K+ L T+ AA G + ++ L + GA+ +
Sbjct: 74 TPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNL 133
Query: 295 ----KDDR------GRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGA 344
K+D+ G + A +KGH+EVL++L + GA
Sbjct: 134 RRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL--------------------LDEMGA 173
Query: 345 STNYCDQYGLTPLHIAAIKGH----KHVVLLLIEFGADVECQDNEGHAPLHLAVE 395
N CD G L A + + + LL++ GADV + G PL LAVE
Sbjct: 174 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE 228
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 67/158 (42%), Gaps = 32/158 (20%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
T LHNA +VE+L+ GADP ++ G + F +A G +++L++
Sbjct: 41 TPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLF--------- 91
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVEC-----Q 382
KGA N CD YG T AA+ G + L + GA+V +
Sbjct: 92 ------------LSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE 139
Query: 383 DNE-----GHAPLHLAVEGGRVEPLLFIWLKQWGTMVS 415
D E G L A E G VE +L I L + G V+
Sbjct: 140 DQERLRKGGATALMDAAEKGHVE-VLKILLDEMGADVN 176
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 79/199 (39%), Gaps = 33/199 (16%)
Query: 198 GWSELHVAAAFGRTEEISSL--------VRMKEYESLDCRDKEGRTPLHLAVNKTSIGCA 249
G++ AA +G+ + + L +R K E + K G T L A K +
Sbjct: 105 GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL 164
Query: 250 KVLL-ESXXXXXXXXXXXXTSLHNAAANGDRRMVE----MLIEMGADPTIKDDRGRSCFD 304
K+LL E +L +A + D VE +L++ GAD ++ +RG++
Sbjct: 165 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI 224
Query: 305 VARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKG 364
+A +K H+ +++ L E + N D G T L +A
Sbjct: 225 LAVEKKHLGLVQRLLEQEHI--------------------EINDTDSDGKTALLLAVELK 264
Query: 365 HKHVVLLLIEFGADVECQD 383
K + LL + GA +C D
Sbjct: 265 LKKIAELLCKRGASTDCGD 283
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 343 GASTNYCDQYG-LTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEP 401
GA+ N+ ++ G TPLH A + +V LL+ GAD + G P LA G V+
Sbjct: 28 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKL 87
Query: 402 L-LFI 405
L LF+
Sbjct: 88 LKLFL 92
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 95/235 (40%), Gaps = 39/235 (16%)
Query: 175 DMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGR 234
D+V LL G ++ E + GW+ LH A R + + L+R L R K G
Sbjct: 39 DLVQQLLEGGANVNFQEE---EGGWTPLHNAVQMSREDIVELLLRHGADPVL--RKKNGA 93
Query: 235 TPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTI 294
TP LA S+ K+ L T+ AA G + ++ L + GA+ +
Sbjct: 94 TPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNL 153
Query: 295 ----KDDR------GRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGA 344
K+D+ G + A +KGH+EVL++L + GA
Sbjct: 154 RRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL--------------------LDEMGA 193
Query: 345 STNYCDQYGLTPLHIAAIKGH----KHVVLLLIEFGADVECQDNEGHAPLHLAVE 395
N CD G L A + + + LL++ GADV + G PL LAVE
Sbjct: 194 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE 248
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 67/158 (42%), Gaps = 32/158 (20%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
T LHNA +VE+L+ GADP ++ G + F +A G +++L++
Sbjct: 61 TPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLF--------- 111
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVEC-----Q 382
KGA N CD YG T AA+ G + L + GA+V +
Sbjct: 112 ------------LSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE 159
Query: 383 DNE-----GHAPLHLAVEGGRVEPLLFIWLKQWGTMVS 415
D E G L A E G VE +L I L + G V+
Sbjct: 160 DQERLRKGGATALMDAAEKGHVE-VLKILLDEMGADVN 196
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 79/199 (39%), Gaps = 33/199 (16%)
Query: 198 GWSELHVAAAFGRTEEISSL--------VRMKEYESLDCRDKEGRTPLHLAVNKTSIGCA 249
G++ AA +G+ + + L +R K E + K G T L A K +
Sbjct: 125 GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL 184
Query: 250 KVLL-ESXXXXXXXXXXXXTSLHNAAANGDRRMVE----MLIEMGADPTIKDDRGRSCFD 304
K+LL E +L +A + D VE +L++ GAD ++ +RG++
Sbjct: 185 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI 244
Query: 305 VARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKG 364
+A +K H+ +++ L E + N D G T L +A
Sbjct: 245 LAVEKKHLGLVQRLLEQEHI--------------------EINDTDSDGKTALLLAVELK 284
Query: 365 HKHVVLLLIEFGADVECQD 383
K + LL + GA +C D
Sbjct: 285 LKKIAELLCKRGASTDCGD 303
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 343 GASTNYCDQYG-LTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEP 401
GA+ N+ ++ G TPLH A + +V LL+ GAD + G P LA G V+
Sbjct: 48 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKL 107
Query: 402 L-LFI 405
L LF+
Sbjct: 108 LKLFL 112
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 62.0 bits (149), Expect = 5e-10, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
AA G+ +E+ L M ++ DK G TPLHLA + +VLL++
Sbjct: 21 AARAGQDDEVRIL--MANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDA 78
Query: 265 XXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQR 320
T LH A G +VE+L++ GAD +D G++ FD++ D G+ ++ E+LQ+
Sbjct: 79 IGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 59.3 bits (142), Expect = 4e-09, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 21/128 (16%)
Query: 270 LHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAAR 329
L AA G V +L+ GAD +D G + +A H+E++EVL +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLK--------- 68
Query: 330 RXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAP 389
GA N D G TPLH+ A+ GH +V +L++ GADV QD G
Sbjct: 69 ------------NGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTA 116
Query: 390 LHLAVEGG 397
++++ G
Sbjct: 117 FDISIDNG 124
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/80 (40%), Positives = 42/80 (52%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
G+ +L AAR GA N D+ GLTPLH+AA+ H +V +L++ GADV
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVN 74
Query: 381 CQDNEGHAPLHLAVEGGRVE 400
D G PLHL G +E
Sbjct: 75 AIDAIGETPLHLVAMYGHLE 94
Score = 38.1 bits (87), Expect = 0.009, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 21/105 (20%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
T LH AA N +VE+L++ GAD D G + + GH+E++EVL +
Sbjct: 49 TPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLK------- 101
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLL 372
GA N D++G T I+ G++ + +L
Sbjct: 102 --------------HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 83/206 (40%), Gaps = 21/206 (10%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCR--DKEGRTPLHLAVNKTSIGCAKVLL-ESXXXXXX 261
A +G E LV D R DKE T LH A I K + +
Sbjct: 16 ATQYGIYERCRELVE----AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQL 71
Query: 262 XXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVL-QR 320
T LH A G MV L++ GADP++ D G SC +A GH ++ L +
Sbjct: 72 GGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK 131
Query: 321 GEAV------------LTAARRXXXXXXXXXXDKGASTNYCDQYGL-TPLHIAAIKGHKH 367
G+ V A R S N D+Y T LH A + G+
Sbjct: 132 GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTT 191
Query: 368 VVLLLIEFGADVECQDNEGHAPLHLA 393
V+ LL+E GA+V+ Q+ +G + L LA
Sbjct: 192 VISLLLEAGANVDAQNIKGESALDLA 217
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 75/146 (51%), Gaps = 8/146 (5%)
Query: 176 MVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRT 235
MV L++ G D + +G S +H+AA FG T ++ L+ + + +D D+ G T
Sbjct: 91 MVVQLMKYG----ADPSLIDGEGCSCIHLAAQFGHTSIVAYLI--AKGQDVDMMDQNGMT 144
Query: 236 PLHLAVNKT-SIGCAKVLLE-SXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPT 293
PL A +T S+ ++LL + T+LH A G+ ++ +L+E GA+
Sbjct: 145 PLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD 204
Query: 294 IKDDRGRSCFDVARDKGHIEVLEVLQ 319
++ +G S D+A+ + ++ ++ LQ
Sbjct: 205 AQNIKGESALDLAKQRKNVWMINHLQ 230
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 355 TPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFI 405
TPLH A +GH +V+ L+++GAD D EG + +HLA + G + ++
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYL 128
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 75/194 (38%), Gaps = 59/194 (30%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGR--TPLHLAVNKTSIGCAKVLLESXXXXXXX 262
AA G E + L + +S++CRD EGR TPLH A +
Sbjct: 19 AAKAGDVETVKKLCTV---QSVNCRDIEGRQSTPLHFAAGYNRV---------------- 59
Query: 263 XXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGE 322
+VE L++ GAD KD G A GH EV E+L +
Sbjct: 60 -----------------SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK-- 100
Query: 323 AVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQ 382
GA N D + TPLH AA KG + LL++ GAD +
Sbjct: 101 -------------------HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK 141
Query: 383 DNEGHAPLHLAVEG 396
+ +G+ PL L +G
Sbjct: 142 NRDGNTPLDLVKDG 155
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 66/129 (51%), Gaps = 3/129 (2%)
Query: 202 LHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXX 261
LH AA + R + L ++ + +DK G PLH A + A++L++
Sbjct: 50 LHFAAGYNRVSVVEYL--LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 107
Query: 262 XXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRG 321
T LH AAA G + ++L++ GADPT K+ G + D+ +D G ++ ++L+
Sbjct: 108 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGD 166
Query: 322 EAVLTAARR 330
A+L AA++
Sbjct: 167 AALLDAAKK 175
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%)
Query: 343 GASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
GA + D+ GL PLH A GH V LL++ GA V D PLH A G+ E
Sbjct: 69 GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 126
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 24/46 (52%)
Query: 355 TPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
TPLH AA VV L++ GADV +D G PLH A G E
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYE 93
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 75/194 (38%), Gaps = 59/194 (30%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGR--TPLHLAVNKTSIGCAKVLLESXXXXXXX 262
AA G E + L + +S++CRD EGR TPLH A +
Sbjct: 15 AAKAGDVETVKKLCTV---QSVNCRDIEGRQSTPLHFAAGYNRV---------------- 55
Query: 263 XXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGE 322
+VE L++ GAD KD G A GH EV E+L +
Sbjct: 56 -----------------SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK-- 96
Query: 323 AVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQ 382
GA N D + TPLH AA KG + LL++ GAD +
Sbjct: 97 -------------------HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK 137
Query: 383 DNEGHAPLHLAVEG 396
+ +G+ PL L +G
Sbjct: 138 NRDGNTPLDLVKDG 151
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 202 LHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXX 261
LH AA + R + L ++ + +DK G PLH A + A++L++
Sbjct: 46 LHFAAGYNRVSVVEYL--LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103
Query: 262 XXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRG 321
T LH AAA G + ++L++ GADPT K+ G + D+ +D G ++ ++L RG
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLL-RG 161
Query: 322 EAVL 325
+A L
Sbjct: 162 DAAL 165
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%)
Query: 343 GASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
GA + D+ GL PLH A GH V LL++ GA V D PLH A G+ E
Sbjct: 65 GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 122
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 24/46 (52%)
Query: 355 TPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
TPLH AA VV L++ GADV +D G PLH A G E
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYE 89
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 75/194 (38%), Gaps = 59/194 (30%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGR--TPLHLAVNKTSIGCAKVLLESXXXXXXX 262
AA G E + L + +S++CRD EGR TPLH A +
Sbjct: 17 AAKAGDVETVKKLCTV---QSVNCRDIEGRQSTPLHFAAGYNRV---------------- 57
Query: 263 XXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGE 322
+VE L++ GAD KD G A GH EV E+L +
Sbjct: 58 -----------------SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK-- 98
Query: 323 AVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQ 382
GA N D + TPLH AA KG + LL++ GAD +
Sbjct: 99 -------------------HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK 139
Query: 383 DNEGHAPLHLAVEG 396
+ +G+ PL L +G
Sbjct: 140 NRDGNTPLDLVKDG 153
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 202 LHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXX 261
LH AA + R + L ++ + +DK G PLH A + A++L++
Sbjct: 48 LHFAAGYNRVSVVEYL--LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 105
Query: 262 XXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRG 321
T LH AAA G + ++L++ GADPT K+ G + D+ +D G ++ ++L RG
Sbjct: 106 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLL-RG 163
Query: 322 EAVL 325
+A L
Sbjct: 164 DAAL 167
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%)
Query: 343 GASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
GA + D+ GL PLH A GH V LL++ GA V D PLH A G+ E
Sbjct: 67 GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 124
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 24/46 (52%)
Query: 355 TPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
TPLH AA VV L++ GADV +D G PLH A G E
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYE 91
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 59.3 bits (142), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/80 (40%), Positives = 42/80 (52%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
G+ +L AAR GA N D +G TPLH+AA+ GH +V +L++ GADV
Sbjct: 15 GKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVN 74
Query: 381 CQDNEGHAPLHLAVEGGRVE 400
N G PLHLA +E
Sbjct: 75 ATGNTGRTPLHLAAWADHLE 94
Score = 55.8 bits (133), Expect = 4e-08, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 55/128 (42%), Gaps = 21/128 (16%)
Query: 270 LHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAAR 329
L AA G V +L GAD D G + +A GH+E++EVL +
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLK--------- 68
Query: 330 RXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAP 389
GA N G TPLH+AA H +V +L++ GADV QD G
Sbjct: 69 ------------NGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTA 116
Query: 390 LHLAVEGG 397
++++ G
Sbjct: 117 FDISIDNG 124
Score = 55.8 bits (133), Expect = 4e-08, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
AA G+ +E+ L ++ D G TPLHLA + +VLL++
Sbjct: 21 AARAGQDDEVRILT--ANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGN 78
Query: 265 XXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQR 320
T LH AA +VE+L++ GAD +D G++ FD++ D G+ ++ E+LQ+
Sbjct: 79 TGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 21/105 (20%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
T LH AA G +VE+L++ GAD + GR+ +A H+E++EVL +
Sbjct: 49 TPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLK------- 101
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLL 372
GA N D++G T I+ G++ + +L
Sbjct: 102 --------------HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 81/206 (39%), Gaps = 16/206 (7%)
Query: 199 WSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXX 258
WS +H AA G + +L+ ++ D +PLH A + C K+LL+
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADH--VSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 259 XXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVL 318
T L NA +G V +L++ GA + D + AR +GH+E + L
Sbjct: 62 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAAR-RGHVECVNSL 120
Query: 319 ------------QRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHK 366
G + A + GA N +PLH A +
Sbjct: 121 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQD-SPLHAVARTASE 179
Query: 367 HVVLLLIEFGADVECQDNEGHAPLHL 392
+ LL++FGAD + ++ EG P+ L
Sbjct: 180 ELACLLMDFGADTQAKNAEGKRPVEL 205
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGG 397
+G + N ++PLH A + GH V +L++ GA V + H PL A G
Sbjct: 25 QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSG 80
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 70/168 (41%), Gaps = 22/168 (13%)
Query: 234 RTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPT 293
R+PLH A + +L+++ T L AA N V+ LI+ GA
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71
Query: 294 IKDDRGRSCFDVARDKGHIEVLE-VLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQY 352
KD G +C +A KGH EV++ +L G+ N D
Sbjct: 72 PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ---------------------MDVNCQDDG 110
Query: 353 GLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
G TP+ A H +V LL+ G+D+ +DNE + LH A G V+
Sbjct: 111 GWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVD 158
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 94/226 (41%), Gaps = 28/226 (12%)
Query: 175 DMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGR 234
D+ +L++AG +I+ ++D + L AA E + L++ +D +D EG
Sbjct: 25 DICHMLVQAGANID----TCSEDQRTPLMEAAENNHLEAVKYLIKAGAL--VDPKDAEGS 78
Query: 235 TPLHLAVNKTSIGCAKVLLESXXXXXXXXXXX-XTSLHNAAANGDRRMVEMLIEMGADPT 293
T LHLA K + LL + T + A +V++L+ G+D
Sbjct: 79 TCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN 138
Query: 294 IKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYG 353
I+D+ C A G +++ E+L + L A + +G
Sbjct: 139 IRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAV---------------------NIHG 177
Query: 354 LTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRV 399
+PLHIAA + V+L + +DV ++ EG PL A +V
Sbjct: 178 DSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQV 223
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 343 GASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPL 402
GA+ + C + TPL AA H V LI+ GA V+ +D EG LHLA + G E +
Sbjct: 34 GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVV 93
Query: 403 LFI 405
++
Sbjct: 94 QYL 96
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 80/206 (38%), Gaps = 16/206 (7%)
Query: 199 WSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXX 258
WS +H AA G + +L+ ++ D +PLH A + C K+LL+
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADH--VSPLHEACLGGHLSCVKILLKHGAQ 117
Query: 259 XXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVL 318
T L NA +G V +L++ GA + D + AR +GH+E + L
Sbjct: 118 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAAR-RGHVECVNSL 176
Query: 319 ------------QRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHK 366
G + A + GA N +PLH +
Sbjct: 177 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQD-SPLHAVVRTASE 235
Query: 367 HVVLLLIEFGADVECQDNEGHAPLHL 392
+ LL++FGAD + ++ EG P+ L
Sbjct: 236 ELACLLMDFGADTQAKNAEGKRPVEL 261
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 12/197 (6%)
Query: 127 LLRHAVSNGDFNAVKSILKRQKMILAG----LSSAEAESLYRVA-TELAANSEDMVSLLL 181
LLR AV++GD V+ +L+ + L +S+A+ E + + A ++ ++ +
Sbjct: 15 LLR-AVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVP 73
Query: 182 RAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAV 241
+GL + V ++DG S LHVAA GR + I L +K + R+ + PLHLA
Sbjct: 74 ASGLGV----NVTSQDGSSPLHVAALHGRADLIPLL--LKHGANAGARNADQAVPLHLAC 127
Query: 242 NKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRS 301
+ K LL+S T L A + G +V +L++ GA +++G +
Sbjct: 128 QQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNT 187
Query: 302 CFDVARDKGHIEVLEVL 318
A + H+ V+E+L
Sbjct: 188 ALHEAVIEKHVFVVELL 204
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 25/138 (18%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
+ LH AA +G ++ +L++ GA+ ++ +A +GH +V++ L
Sbjct: 88 SPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL--------- 138
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
D A N D G TPL A GH +V LL++ GA + +N+G+
Sbjct: 139 ------------LDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGN 186
Query: 388 APLHLAVEGGRVEPLLFI 405
LH AV +E +F+
Sbjct: 187 TALHEAV----IEKHVFV 200
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 343 GASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
G N Q G +PLH+AA+ G ++ LL++ GA+ ++ + PLHLA + G +
Sbjct: 76 GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQ 133
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 356 PLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMVS 415
PLH+A +GH VV L++ A +D G+ PL A GG E L L Q G ++
Sbjct: 122 PLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHE--LVALLLQHGASIN 179
Query: 416 HS 417
S
Sbjct: 180 AS 181
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 82/215 (38%), Gaps = 55/215 (25%)
Query: 173 SEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKE 232
+ ++ S LL ++ +D+ GW+ H+A + G E + SL L+ +
Sbjct: 48 AHEITSFLLSKMENVNLDD-YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ 106
Query: 233 GRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADP 292
G T LHLAV K ++ L+E+ LH AA+ G +++E+L +G
Sbjct: 107 GVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK-- 164
Query: 293 TIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQY 352
++ N+ D+
Sbjct: 165 ---------------------------------------------------SAVNWQDKQ 173
Query: 353 GLTPLHIAAIKGHKHVVLLLIE-FGADVECQDNEG 386
G TPL A +GH +LL+E +GA+ + DN+G
Sbjct: 174 GWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 19/105 (18%)
Query: 296 DDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLT 355
DD G + F +A G++EV++ L D TN G+T
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSL---------------YDRPLKPDLNKITNQ----GVT 109
Query: 356 PLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
LH+A K V LIE GA V +D PLH A G ++
Sbjct: 110 CLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLK 154
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 82/215 (38%), Gaps = 55/215 (25%)
Query: 173 SEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKE 232
+ ++ S LL ++ +D+ GW+ H+A + G E + SL L+ +
Sbjct: 48 AHEITSFLLSKMENVNLDD-YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ 106
Query: 233 GRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADP 292
G T LHLAV K ++ L+E+ LH AA+ G +++E+L +G
Sbjct: 107 GVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK-- 164
Query: 293 TIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQY 352
++ N+ D+
Sbjct: 165 ---------------------------------------------------SAVNWQDKQ 173
Query: 353 GLTPLHIAAIKGHKHVVLLLIE-FGADVECQDNEG 386
G TPL A +GH +LL+E +GA+ + DN+G
Sbjct: 174 GWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 19/105 (18%)
Query: 296 DDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLT 355
DD G + F +A G++EV++ L D TN G+T
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSL---------------YDRPLKPDLNKITNQ----GVT 109
Query: 356 PLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
LH+A K V LIE GA V +D PLH A G ++
Sbjct: 110 CLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLK 154
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 82/215 (38%), Gaps = 55/215 (25%)
Query: 173 SEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKE 232
+ ++ S LL ++ +D+ GW+ H+A + G E + SL L+ +
Sbjct: 48 AHEITSFLLSKMENVNLDD-YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ 106
Query: 233 GRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADP 292
G T LHLAV K ++ L+E+ LH AA+ G +++E+L +G
Sbjct: 107 GVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK-- 164
Query: 293 TIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQY 352
++ N+ D+
Sbjct: 165 ---------------------------------------------------SAVNWQDKQ 173
Query: 353 GLTPLHIAAIKGHKHVVLLLIE-FGADVECQDNEG 386
G TPL A +GH +LL+E +GA+ + DN+G
Sbjct: 174 GWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 19/105 (18%)
Query: 296 DDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLT 355
DD G + F +A G++EV++ L D TN G+T
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSL---------------YDRPLKPDLNKITNQ----GVT 109
Query: 356 PLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
LH+A K V LIE GA V +D PLH A G ++
Sbjct: 110 CLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLK 154
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 21/110 (19%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
T LH A+ GD VE L++ G+DP +KD G + A + GH++V+E+L + +A++
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN- 70
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGA 377
+T Y + +PLH AA GH +V LL+ +GA
Sbjct: 71 -----------------TTGYQND---SPLHDAAKNGHVDIVKLLLSYGA 100
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 46/112 (41%), Gaps = 22/112 (19%)
Query: 289 GADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNY 348
G DP + RG + +A KG I +E L + G+ N
Sbjct: 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQ---------------------NGSDPNV 38
Query: 349 CDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
D G TPLH A GH VV LL++ A V + +PLH A + G V+
Sbjct: 39 KDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVD 90
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
Query: 198 GWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXX 257
G + LH+A+ G + L ++ + +D G TPLH A N + ++LL+
Sbjct: 10 GETLLHIASIKGDIPSVEYL--LQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA 67
Query: 258 XXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEV 317
+ LH+AA NG +V++L+ GA + G D D+ +L +
Sbjct: 68 LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLL 127
Query: 318 LQRGEA 323
++ E+
Sbjct: 128 PEKNES 133
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 177 VSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTP 236
V LL+ G D VK GW+ LH A G + + L++ K ++ + +P
Sbjct: 26 VEYLLQNG----SDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL--VNTTGYQNDSP 79
Query: 237 LHLAVNKTSIGCAKVLL 253
LH A + K+LL
Sbjct: 80 LHDAAKNGHVDIVKLLL 96
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 92/202 (45%), Gaps = 8/202 (3%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
A + G TEE+ L ++ ++ + +G T LH A ++ K L+E+
Sbjct: 47 ACSSGDTEEVLRL--LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN 104
Query: 265 XXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLE-VLQRGEA 323
LH AA+ G + E LI GA + G + D+A ++ E+L+ + R
Sbjct: 105 EGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV 164
Query: 324 VLTAARRXXXXXXXXXXDKGASTNYCD-----QYGLTPLHIAAIKGHKHVVLLLIEFGAD 378
+ AAR+ + ++ + + + G T LH+AA KG+ V+ LLI+ D
Sbjct: 165 DIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD 224
Query: 379 VECQDNEGHAPLHLAVEGGRVE 400
V +D +G PLH A G+ E
Sbjct: 225 VNIKDYDGWTPLHAAAHWGKEE 246
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA 290
K G T LH+A K K+L+++ T LH AA G +L+E
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC 256
Query: 291 DPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARR 330
D + G++ FDVA D+ + LE LQ+ + +L + +R
Sbjct: 257 DMEAVNKVGQTAFDVA-DEDILGYLEELQKKQNLLHSEKR 295
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 103/278 (37%), Gaps = 47/278 (16%)
Query: 131 AVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEID 190
A S+GD V +L+R A ++ A + L + ++ DMV L+ G +I
Sbjct: 47 ACSSGDTEEVLRLLERG----ADINYANVDGLTALHQACIDDNVDMVKFLVENGANI--- 99
Query: 191 ERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAK 250
+GW LH AA+ G + L+ + + + EG TPL +A + +
Sbjct: 100 -NQPDNEGWIPLHAAASCGYLDIAEYLISQGAH--VGAVNSEGDTPLDIAEEEAMEELLQ 156
Query: 251 VLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDR----GRSCFDVA 306
+ A +R M+ + I D R G + VA
Sbjct: 157 ----------NEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVA 206
Query: 307 RDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHK 366
KG+ EVL++L AR N D G TPLH AA G +
Sbjct: 207 AAKGYTEVLKLL-------IQARY--------------DVNIKDYDGWTPLHAAAHWGKE 245
Query: 367 HVVLLLIEFGADVECQDNEGHAPLHLAVEG--GRVEPL 402
+L+E D+E + G +A E G +E L
Sbjct: 246 EACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEEL 283
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%)
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
KGA N + G TPLH+AA GH +V LL+ GADV + +G+ P HLA + G E
Sbjct: 31 KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHE 89
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 195 TKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLE 254
+KDG + LH AA G EE+ L + + ++ R K+G TPLHLA K+LL
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKL--LSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA 63
Query: 255 SXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGAD 291
T H A NG +V++L GAD
Sbjct: 64 KGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%)
Query: 348 YCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
+ + G TPLH AA GH V L+ GADV + +G+ PLHLA + G E
Sbjct: 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAE 56
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%)
Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA 290
K+G TPLH A K LL T LH AA NG +V++L+ GA
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 291 DPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
D + G + +A+ GH E++++L A + A
Sbjct: 67 DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 185 LSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLA 240
LS D ++KDG + LH+AA G E + L + + ++ R K+G TP HLA
Sbjct: 29 LSKGADVNARSKDGNTPLHLAAKNGHAEIVKLL--LAKGADVNARSKDGNTPEHLA 82
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 52.8 bits (125), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
G+ +L AAR GA N D+ G TPLH+AA +GH +V +L++ GADV
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 381 CQDNEGHAPLHLAVEGG 397
QD G ++++ G
Sbjct: 63 AQDKFGKTAFDISIDNG 79
Score = 45.8 bits (107), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 35/117 (29%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
AA G+ +E+ L M ++ +DK+G TPLHLA
Sbjct: 9 AARAGQDDEVRIL--MANGADVNAKDKDGYTPLHLA------------------------ 42
Query: 265 XXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRG 321
A G +VE+L++ GAD +D G++ FD++ D G+ ++ E+LQ+
Sbjct: 43 ---------AREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEILQKA 90
Score = 37.0 bits (84), Expect = 0.021, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 360 AAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
AA G V +L+ GADV +D +G+ PLHLA G +E
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLE 49
Score = 36.2 bits (82), Expect = 0.036, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 21/103 (20%)
Query: 270 LHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAAR 329
L AA G V +L+ GAD KD G + +A +GH+E++EVL +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-------- 57
Query: 330 RXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLL 372
GA N D++G T I+ G++ + +L
Sbjct: 58 -------------GADVNAQDKFGKTAFDISIDNGNEDLAEIL 87
Score = 35.8 bits (81), Expect = 0.043, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRD 230
A +D V +L+ G D K KDG++ LH+AA G E + L +K ++ +D
Sbjct: 12 AGQDDEVRILMANG----ADVNAKDKDGYTPLHLAAREGHLEIVEVL--LKAGADVNAQD 65
Query: 231 KEGRTPLHLAVNKTSIGCAKVL 252
K G+T ++++ + A++L
Sbjct: 66 KFGKTAFDISIDNGNEDLAEIL 87
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 39/78 (50%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
G+ +L AAR GA D+ G TPLH+AA GH VV LL+E GADV
Sbjct: 7 GKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVN 66
Query: 381 CQDNEGHAPLHLAVEGGR 398
QD G ++++ G
Sbjct: 67 AQDKFGKTAFDISIDNGN 84
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%)
Query: 250 KVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDK 309
++L+ + T LH AA NG +V++L+E GAD +D G++ FD++ D
Sbjct: 23 RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDN 82
Query: 310 GHIEVLEVLQ 319
G+ ++ E+LQ
Sbjct: 83 GNEDLAEILQ 92
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 360 AAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
AA G V +L+ GADV +D G PLHLA G +E
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLE 53
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 21/100 (21%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
AA G V +L+ GAD KD G + +A GH+EV+++L
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLL-------------- 58
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLL 372
+ GA N D++G T I+ G++ + +L
Sbjct: 59 -------LEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRD 230
A +D V +L+ G + K K+G + LH+AA G E + L ++ ++ +D
Sbjct: 16 AGQDDEVRILMANGADVA----AKDKNGSTPLHLAARNGHLEVVKLL--LEAGADVNAQD 69
Query: 231 KEGRTPLHLAVNKTSIGCAKVL 252
K G+T ++++ + A++L
Sbjct: 70 KFGKTAFDISIDNGNEDLAEIL 91
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 98/248 (39%), Gaps = 47/248 (18%)
Query: 175 DMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGR 234
D V L+ G+S I R G + LH+A FG + L + E SL G+
Sbjct: 34 DEVRRLIETGVSPTIQNRF----GCTALHLACKFGCVDTAKYLASVGEVHSL----WHGQ 85
Query: 235 TPLHLAV--NKTSIGCAKV------------LLE-------SXXXXXXXXXXXXTSLHNA 273
P+HLAV NKT + A V LL + T+LH
Sbjct: 86 KPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVKHCKGQTALHWC 145
Query: 274 AANGDRRM--VEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRX 331
G + +++L+++GA PT KD + A + + E L++ ++ R
Sbjct: 146 VGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXXDTVPSKSSLR-- 203
Query: 332 XXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLH 391
+Y ++ G + LH A + + V +E G DV +DNE PL+
Sbjct: 204 --------------LDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLY 249
Query: 392 LAVEGGRV 399
L+V V
Sbjct: 250 LSVRAAXV 257
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%)
Query: 350 DQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFI 405
D +H+AA KG V LIE G Q+ G LHLA + G V+ ++
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYL 72
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 56/159 (35%), Gaps = 33/159 (20%)
Query: 270 LHNAAANGDRRMVEMLIEMGADPTIKDDRGRS---------CFDVARDKGHIEVLEVLQR 320
+H AA G V LIE G PTI++ G + C D A+ + + L
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWH 83
Query: 321 GEAVLTAARRXXXXXXXXXXDKGAST---------NYCDQY-------------GLTPLH 358
G+ + A +GA N CD+ G T LH
Sbjct: 84 GQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVKHCKGQTALH 143
Query: 359 IAAIKGHKHV--VLLLIEFGADVECQDNEGHAPLHLAVE 395
G +++ + +L++ GA +D PL A E
Sbjct: 144 WCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXE 182
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 39/77 (50%)
Query: 321 GEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380
G+ +L AAR GA D+ G TPLH+AA GH VV LL+E GADV
Sbjct: 25 GKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX 84
Query: 381 CQDNEGHAPLHLAVEGG 397
QD G ++++ G
Sbjct: 85 AQDKFGKTAFDISIDNG 101
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%)
Query: 250 KVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDK 309
++L+ + T LH AA NG +V++L+E GAD +D G++ FD++ D
Sbjct: 41 RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN 100
Query: 310 GHIEVLEVLQ 319
G+ ++ E+LQ
Sbjct: 101 GNEDLAEILQ 110
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 360 AAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
AA G V +L+ GADV +D G PLHLA G +E
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLE 71
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRD 230
A +D V +L+ G + K K+G + LH+AA G E + L ++ + +D
Sbjct: 34 AGQDDEVRILMANGADVA----AKDKNGSTPLHLAARNGHLEVVKLL--LEAGADVXAQD 87
Query: 231 KEGRTPLHLAVNKTSIGCAKVL 252
K G+T ++++ + A++L
Sbjct: 88 KFGKTAFDISIDNGNEDLAEIL 109
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 21/100 (21%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
AA G V +L+ GAD KD G + +A GH+EV+++L
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLL-------------- 76
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLL 372
+ GA D++G T I+ G++ + +L
Sbjct: 77 -------LEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 9/183 (4%)
Query: 149 MILAGLSSAEAESLYRVATELAANSEDMVSL--LLRAGLSIEIDERVKTKDGWSELHVAA 206
++ AG S + + A LA L LL + +D + DG + LHVA
Sbjct: 65 LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 124
Query: 207 AFGRTEEISSLV-RMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXX 265
E + L+ R + +++D K GR+PL AV S+ ++LL+
Sbjct: 125 NTECQETVQLLLERGADIDAVDI--KSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS 182
Query: 266 XXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVL 325
++LH+A+ G +V L+ GAD ++K+ + VAR + I++L RG+A
Sbjct: 183 GSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL----RGKATR 238
Query: 326 TAA 328
A+
Sbjct: 239 PAS 241
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 77/191 (40%), Gaps = 24/191 (12%)
Query: 230 DKEGRTPLHLAVNKTSIGCAKVLL----ESXXXXXXXXXXXXTSLHNAAANGDRRMVEML 285
D++G TPLH+AV + ++ L+ + T LH A +V +L
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 286 IEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGAS 345
+ GA P D G++ +A + L L A T D A
Sbjct: 66 VTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGT-------------LDLEAR 112
Query: 346 TNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQD-NEGHAPLHLAVEGGRVEPLLF 404
NY GLT LH+A + V LL+E GAD++ D G +PL AVE + +
Sbjct: 113 -NY---DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS--MV 166
Query: 405 IWLKQWGTMVS 415
L Q G V+
Sbjct: 167 QLLLQHGANVN 177
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 92/230 (40%), Gaps = 29/230 (12%)
Query: 196 KDGWSELHVAAAFGRTEEISSLVRMKEY--ESLDCRDKEGRTPLHLAVNKTSIGCAKVLL 253
+DG + LH+A G + LV + + LD + +TPLHLAV T ++L+
Sbjct: 7 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 66
Query: 254 ESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTI----KDDRGRSCFDVARDK 309
+ T+ H A + + L++ A T+ ++ G + VA +
Sbjct: 67 TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 126
Query: 310 GHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCD-QYGLTPLHIAAIKGHKHV 368
E +++L ++GA + D + G +PL A +
Sbjct: 127 ECQETVQLL---------------------LERGADIDAVDIKSGRSPLIHAVENNSLSM 165
Query: 369 VLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMVSHSC 418
V LL++ GA+V Q G + LH A G + PL+ ++ +C
Sbjct: 166 VQLLLQHGANVNAQMYSGSSALHSA-SGRGLLPLVRTLVRSGADSSLKNC 214
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEP 401
+GA+ + D+ G +H AA G + L+EF ADV +DNEG+ PLHLA + G +
Sbjct: 59 RGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV 118
Query: 402 LLFIWLKQWGTMVSH 416
+ F+ +K + V H
Sbjct: 119 VEFL-VKHTASNVGH 132
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 62/150 (41%), Gaps = 41/150 (27%)
Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRD 230
N E LLLR + +K + G++ +H AA G+ + + +L+ + ++ D
Sbjct: 48 GNPEIARRLLLRGA-----NPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQA--DVNIED 100
Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA 290
EG PLHL AA G R+VE L++ A
Sbjct: 101 NEGNLPLHL---------------------------------AAKEGHLRVVEFLVKHTA 127
Query: 291 -DPTIKDDRGRSCFDVARDKGHIEVLEVLQ 319
+ ++ +G + D+AR G EV+ ++Q
Sbjct: 128 SNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 28/135 (20%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRG------ 321
T LH A + E L+ G DP ++D RG + +A ++G + + VL +
Sbjct: 44 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 103
Query: 322 EAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVEC 381
++L A TNY G T LH+A+I G+ +V LL+ GADV
Sbjct: 104 HSILKA------------------TNY---NGHTCLHLASIHGYLGIVELLVSLGADVNA 142
Query: 382 QDN-EGHAPLHLAVE 395
Q+ G LHLAV+
Sbjct: 143 QEPCNGRTALHLAVD 157
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 83/209 (39%), Gaps = 34/209 (16%)
Query: 195 TKDGWSELHVAAAFGRTEEISSLVRM--KEYESLDCRDKEGRTPLHLAVNKTSIGCAKVL 252
T+DG S LH+A ++R + L+ ++ +TPLHLAV A+ L
Sbjct: 2 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 61
Query: 253 LESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIK------DDRGRSCFDVA 306
L + T LH A G V +L + P + + G +C +A
Sbjct: 62 LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA 121
Query: 307 RDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNY---CDQYGLTPLHIAAIK 363
G++ ++E+L GA N C+ G T LH+A
Sbjct: 122 SIHGYLGIVELL---------------------VSLGADVNAQEPCN--GRTALHLAVDL 158
Query: 364 GHKHVVLLLIEFGADVECQDNEGHAPLHL 392
+ +V LL++ GADV +G++P L
Sbjct: 159 QNPDLVSLLLKCGADVNRVTYQGYSPYQL 187
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%)
Query: 344 ASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGG 397
A N+ + TPLH+A I + L+ G D E +D G+ PLHLA E G
Sbjct: 33 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQG 86
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 28/135 (20%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRG------ 321
T LH A + E L+ G DP ++D RG + +A ++G + + VL +
Sbjct: 47 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 106
Query: 322 EAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVEC 381
++L A TNY G T LH+A+I G+ +V LL+ GADV
Sbjct: 107 HSILKA------------------TNY---NGHTCLHLASIHGYLGIVELLVSLGADVNA 145
Query: 382 QDN-EGHAPLHLAVE 395
Q+ G LHLAV+
Sbjct: 146 QEPCNGRTALHLAVD 160
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 83/207 (40%), Gaps = 28/207 (13%)
Query: 195 TKDGWSELHVAAAFGRTEEISSLVRM--KEYESLDCRDKEGRTPLHLAVNKTSIGCAKVL 252
T+DG S LH+A ++R + L+ ++ +TPLHLAV A+ L
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64
Query: 253 LESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIK------DDRGRSCFDVA 306
L + T LH A G V +L + P + + G +C +A
Sbjct: 65 LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA 124
Query: 307 RDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHK 366
G++ ++E+L A + A C+ G T LH+A +
Sbjct: 125 SIHGYLGIVELLVSLGADVNAQEP------------------CN--GRTALHLAVDLQNP 164
Query: 367 HVVLLLIEFGADVECQDNEGHAPLHLA 393
+V LL++ GADV +G++P L
Sbjct: 165 DLVSLLLKCGADVNRVTYQGYSPYQLT 191
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%)
Query: 344 ASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGG 397
A N+ + TPLH+A I + L+ G D E +D G+ PLHLA E G
Sbjct: 36 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQG 89
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEP 401
+GA+ + D+ G +H AA G + L+EF ADV +DNEG+ PLHLA + G +
Sbjct: 59 RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV 118
Query: 402 LLFIWLKQWGTMVSH 416
+ F+ +K + V H
Sbjct: 119 VEFL-VKHTASNVGH 132
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 41/150 (27%)
Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRD 230
N E LLLR + +K + G++ +H AA G + + +L+ + ++ D
Sbjct: 48 GNPEIARRLLLRGA-----NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQA--DVNIED 100
Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA 290
EG PLHL AA G R+VE L++ A
Sbjct: 101 NEGNLPLHL---------------------------------AAKEGHLRVVEFLVKHTA 127
Query: 291 -DPTIKDDRGRSCFDVARDKGHIEVLEVLQ 319
+ ++ +G + D+AR G EV+ ++Q
Sbjct: 128 SNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEP 401
+GA+ + D+ G +H AA G + L+EF ADV +DNEG+ PLHLA + G +
Sbjct: 59 RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV 118
Query: 402 LLFIWLKQWGTMVSH 416
+ F+ +K + V H
Sbjct: 119 VEFL-VKHTASNVGH 132
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 41/150 (27%)
Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRD 230
N E LLLR + +K + G++ +H AA G + + +L+ + ++ D
Sbjct: 48 GNPEIARRLLLRGA-----NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQA--DVNIED 100
Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA 290
EG PLHL AA G R+VE L++ A
Sbjct: 101 NEGNLPLHL---------------------------------AAKEGHLRVVEFLVKHTA 127
Query: 291 -DPTIKDDRGRSCFDVARDKGHIEVLEVLQ 319
+ ++ +G + D+AR G EV+ ++Q
Sbjct: 128 SNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEP 401
+GAS N D G +P+H AA G + +L+E GADV D G P+HLAV+ G
Sbjct: 57 QGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAV 116
Query: 402 LLFI 405
+ F+
Sbjct: 117 VSFL 120
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 22/113 (19%)
Query: 285 LIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGA 344
L++ GA P ++D G S A G ++ L+VL + GA
Sbjct: 54 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVL---------------------VEHGA 92
Query: 345 STNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGG 397
N D G P+H+A +GH VV L +D+ +D G PL LA++ G
Sbjct: 93 DVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRG 144
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 24/168 (14%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
AAA G +E+ L+ +E D ++ G+T L + + S A LL+
Sbjct: 9 AAARGDVQEVRRLLH-RELVHPDALNRFGKTALQVMMFG-STAIALELLKQGASPNVQDT 66
Query: 265 XXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV 324
+ +H+AA G +++L+E GAD + D G +A +GH V+ L
Sbjct: 67 SGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL------ 120
Query: 325 LTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLL 372
AA + + D GLTPL +A +G + +V +L
Sbjct: 121 --AAE--------------SDLHRRDARGLTPLELALQRGAQDLVDIL 152
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 72/165 (43%), Gaps = 33/165 (20%)
Query: 279 RRMVEMLIEMGADPTIKDDRGRSCFDVA---RD-------------KGHIEVLEVLQRGE 322
RR+V L + GADPTI + RS A RD KG IE L+ + G
Sbjct: 179 RRLVAYLXKAGADPTIYNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELD--RNGX 236
Query: 323 AVLTAAR----RXXXXXXXXXXDKGASTNY-------CDQY-GLTPLHIAAIKGHKHVVL 370
L R +KGA +Y ++Y G T LH AA + +V
Sbjct: 237 TALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVK 296
Query: 371 LLI-EFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMV 414
L+ E G++ + QD +G P+ LA + GR+E + +L Q G V
Sbjct: 297 YLVGEKGSNKDKQDEDGKTPIXLAAQEGRIE--VVXYLIQQGASV 339
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 341 DKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLA 393
+KG++ + D+ G TP+ +AA +G VV LI+ GA VE D H LA
Sbjct: 301 EKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLA 353
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEP 401
+GAS N D G +P+H AA G + +L+E GADV D G P+HLAV+ G
Sbjct: 63 QGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAV 122
Query: 402 LLFI 405
+ F+
Sbjct: 123 VSFL 126
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 22/113 (19%)
Query: 285 LIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGA 344
L++ GA P ++D G S A G ++ L+VL + GA
Sbjct: 60 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVL---------------------VEHGA 98
Query: 345 STNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGG 397
N D G P+H+A +GH VV L +D+ +D G PL LA++ G
Sbjct: 99 DVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRG 150
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 27/182 (14%)
Query: 191 ERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAK 250
E V+ D S AAA G +E+ L+ +E D ++ G+T L + + S A
Sbjct: 4 EEVRAGDRLSG---AAARGDVQEVRRLLH-RELVHPDALNRFGKTALQVMMFG-STAIAL 58
Query: 251 VLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKG 310
LL+ + +H+AA G +++L+E GAD + D G +A +G
Sbjct: 59 ELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG 118
Query: 311 HIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVL 370
H V+ L AA + + D GLTPL +A +G + +V
Sbjct: 119 HTAVVSFL--------AAE--------------SDLHRRDARGLTPLELALQRGAQDLVD 156
Query: 371 LL 372
+L
Sbjct: 157 IL 158
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEP 401
+GA+ + D+ G +H AA G + L+EF ADV +DNEG+ PLHLA + G +
Sbjct: 59 RGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV 118
Query: 402 LLFIWLKQWGTMVSH 416
+ F+ +K + V H
Sbjct: 119 VEFL-VKHTASNVGH 132
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 41/150 (27%)
Query: 171 ANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRD 230
N E LLLR + +K + G + +H AA G + + +L+ + ++ D
Sbjct: 48 GNPEIARRLLLRGA-----NPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQA--DVNIED 100
Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA 290
EG PLHL AA G R+VE L++ A
Sbjct: 101 NEGNLPLHL---------------------------------AAKEGHLRVVEFLVKHTA 127
Query: 291 -DPTIKDDRGRSCFDVARDKGHIEVLEVLQ 319
+ ++ +G + D+AR G EV+ ++Q
Sbjct: 128 SNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 21/130 (16%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
T L AAA+G +VE L++ GADP + S +A KG+ +++++L
Sbjct: 54 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML--------- 104
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
D G N D G TPL A H V +L+E GAD + + G+
Sbjct: 105 ------------LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGY 152
Query: 388 APLHLAVEGG 397
+ LAV G
Sbjct: 153 NSMDLAVALG 162
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 9/154 (5%)
Query: 168 ELAANSEDMVSLLLRAGLSIEIDERVKTKD--GWSELHVAAAFGRTEEISSLVRMKEYES 225
+LAA E M+ L R IE + + D G++ L AAA G+ + L++
Sbjct: 25 QLAAQGE-MLYLATR----IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 79
Query: 226 LDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEML 285
L + +E + L LA +K K+LL+ T L A + V+ML
Sbjct: 80 LLGKGRE--SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 137
Query: 286 IEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQ 319
+E GADPTI+ D G + D+A G+ V +V++
Sbjct: 138 LESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 171
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 50/132 (37%), Gaps = 21/132 (15%)
Query: 269 SLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAA 328
S+H AA G+ + IE D+ G + A G I V+E L +
Sbjct: 22 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-------- 73
Query: 329 RRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHA 388
GA + + L +A KG+ +V +L++ G DV D G
Sbjct: 74 -------------NGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGT 120
Query: 389 PLHLAVEGGRVE 400
PL AV G V+
Sbjct: 121 PLLYAVHGNHVK 132
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 21/130 (16%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
T L AAA+G +VE L++ GADP + S +A KG+ +++++L
Sbjct: 36 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML--------- 86
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
D G N D G TPL A H V +L+E GAD + + G+
Sbjct: 87 ------------LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGY 134
Query: 388 APLHLAVEGG 397
+ LAV G
Sbjct: 135 NSMDLAVALG 144
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 9/154 (5%)
Query: 168 ELAANSEDMVSLLLRAGLSIEIDERVKTKD--GWSELHVAAAFGRTEEISSLVRMKEYES 225
+LAA E M+ L R IE + + D G++ L AAA G+ + L++
Sbjct: 7 QLAAQGE-MLYLATR----IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 61
Query: 226 LDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEML 285
L + +E + L LA +K K+LL+ T L A + V+ML
Sbjct: 62 LLGKGRE--SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 119
Query: 286 IEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQ 319
+E GADPTI+ D G + D+A G+ V +V++
Sbjct: 120 LESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 153
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 50/132 (37%), Gaps = 21/132 (15%)
Query: 269 SLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAA 328
S+H AA G+ + IE D+ G + A G I V+E L +
Sbjct: 4 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-------- 55
Query: 329 RRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHA 388
GA + + L +A KG+ +V +L++ G DV D G
Sbjct: 56 -------------NGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGT 102
Query: 389 PLHLAVEGGRVE 400
PL AV G V+
Sbjct: 103 PLLYAVHGNHVK 114
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 21/127 (16%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
T L AAA+G +VE L++ GADP + S +A KG+ +++++L
Sbjct: 38 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML--------- 88
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
D G N D G TPL A H V +L+E GAD + + G+
Sbjct: 89 ------------LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGY 136
Query: 388 APLHLAV 394
+ LAV
Sbjct: 137 NSMDLAV 143
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 9/154 (5%)
Query: 168 ELAANSEDMVSLLLRAGLSIEIDERVKTKD--GWSELHVAAAFGRTEEISSLVRMKEYES 225
+LAA E M+ L R IE + + D G++ L AAA G+ + L++
Sbjct: 9 QLAAQGE-MLYLATR----IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 63
Query: 226 LDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEML 285
L + +E + L LA +K K+LL+ T L A + V+ML
Sbjct: 64 LLGKGRE--SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 121
Query: 286 IEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQ 319
+E GADPTI+ D G + D+A G+ V +V++
Sbjct: 122 LESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 155
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 50/132 (37%), Gaps = 21/132 (15%)
Query: 269 SLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAA 328
S+H AA G+ + IE D+ G + A G I V+E L +
Sbjct: 6 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-------- 57
Query: 329 RRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHA 388
GA + + L +A KG+ +V +L++ G DV D G
Sbjct: 58 -------------NGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGT 104
Query: 389 PLHLAVEGGRVE 400
PL AV G V+
Sbjct: 105 PLLYAVHGNHVK 116
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEP 401
+GAS N D G +P+H AA G + +L+E GADV D+ G P+HLA+ G
Sbjct: 65 QGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSV 124
Query: 402 LLFI 405
+ F+
Sbjct: 125 VSFL 128
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 22/113 (19%)
Query: 285 LIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGA 344
L++ GA P ++D G S A G ++ L+VL + GA
Sbjct: 62 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVL---------------------VEHGA 100
Query: 345 STNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGG 397
N D G P+H+A +GH VV L +D+ +D G PL LA + G
Sbjct: 101 DVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELARQRG 152
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 24/168 (14%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
AAA G +E+ L+ +E D ++ G+T L + + S A LL+
Sbjct: 17 AAARGDVQEVRRLLH-RELVHPDALNRFGKTALQVMMFG-SPAVALELLKQGASPNVQDA 74
Query: 265 XXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV 324
+ +H+AA G +++L+E GAD D G +A +GH V+ L
Sbjct: 75 SGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLA----- 129
Query: 325 LTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLL 372
+ ++ D GLTPL +A +G ++++ +L
Sbjct: 130 -----------------PESDLHHRDASGLTPLELARQRGAQNLMDIL 160
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEP 401
+GAS N D G +P+H AA G + +L+E GADV D+ G P+HLA+ G
Sbjct: 63 QGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSV 122
Query: 402 LLFI 405
+ F+
Sbjct: 123 VSFL 126
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 22/113 (19%)
Query: 285 LIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGA 344
L++ GA P ++D G S A G ++ L+VL + GA
Sbjct: 60 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVL---------------------VEHGA 98
Query: 345 STNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGG 397
N D G P+H+A +GH VV L +D+ +D G PL LA + G
Sbjct: 99 DVNALDSTGSLPIHLAIREGHSSVVSFLAP-ESDLHHRDASGLTPLELARQRG 150
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 24/168 (14%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
AAA G +E+ L+ +E D ++ G+T L + + S A LL+
Sbjct: 15 AAARGDVQEVRRLLH-RELVHPDALNRFGKTALQVMMFG-SPAVALELLKQGASPNVQDA 72
Query: 265 XXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV 324
+ +H+AA G +++L+E GAD D G +A +GH V+ L
Sbjct: 73 SGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLA----- 127
Query: 325 LTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLL 372
+ ++ D GLTPL +A +G ++++ +L
Sbjct: 128 -----------------PESDLHHRDASGLTPLELARQRGAQNLMDIL 158
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVE 395
GA+ N D G PLH A I GH + L ++ GAD+ +D+EG PL +A+E
Sbjct: 257 NGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAME 310
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 39/89 (43%)
Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA 290
++ TPL A S+ + LL++ LH+A G + + ++ GA
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 291 DPTIKDDRGRSCFDVARDKGHIEVLEVLQ 319
D +D GR +A + + +++ +L+
Sbjct: 293 DLGARDSEGRDPLTIAMETANADIVTLLR 321
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVE 395
GA+ N D G PLH A I GH + L ++ GAD+ +D+EG PL +A+E
Sbjct: 257 NGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAME 310
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 39/89 (43%)
Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA 290
++ TPL A S+ + LL++ LH+A G + + ++ GA
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 291 DPTIKDDRGRSCFDVARDKGHIEVLEVLQ 319
D +D GR +A + + +++ +L+
Sbjct: 293 DLGARDSEGRDPLTIAMETANADIVTLLR 321
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVE 395
GA+ N D G PLH A I GH + L ++ GAD+ +D+EG PL +A+E
Sbjct: 257 NGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAME 310
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 39/89 (43%)
Query: 231 KEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA 290
++ TPL A S+ + LL++ LH+A G + + ++ GA
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 291 DPTIKDDRGRSCFDVARDKGHIEVLEVLQ 319
D +D GR +A + + +++ +L+
Sbjct: 293 DLGARDSEGRDPLTIAMETANADIVTLLR 321
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEP 401
+GA+ + D+ G +H AA G + L+E ADV +DNEG+ PLHLA + G +
Sbjct: 59 RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRV 118
Query: 402 LLFIWLKQWGTMVSH 416
+ F+ +K + V H
Sbjct: 119 VEFL-VKHTASNVGH 132
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLI 286
D +D+ G +H A + + LLE+ LH AA G R+VE L+
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 287 EMGA-DPTIKDDRGRSCFDVARDKGHIEVLEVLQ 319
+ A + ++ +G + D+AR G EV+ ++Q
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGR 398
+GA N ++ TPLH+AA GH+ +V L+++ AD+ + G+ PLH A G+
Sbjct: 61 RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQ 117
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 347 NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGG 397
N D +G +PLH A +G VV +LI GA + + PLHLA G
Sbjct: 33 NQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG 83
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 51/136 (37%), Gaps = 21/136 (15%)
Query: 225 SLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEM 284
L+ D G +PLH A + ++L+ T LH AA++G R +V+
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 285 LIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGA 344
L++ AD ++ G A G +V E L GA
Sbjct: 91 LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDL---------------------VANGA 129
Query: 345 STNYCDQYGLTPLHIA 360
+ C++YG P+ A
Sbjct: 130 LVSICNKYGEMPVDKA 145
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 21/126 (16%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
+ LH A G +VEMLI GA + + + +A GH ++++ L + +A + A
Sbjct: 41 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 100
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
+++G PLH A G V L+ GA V + G
Sbjct: 101 V---------------------NEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGE 139
Query: 388 APLHLA 393
P+ A
Sbjct: 140 MPVDKA 145
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 2/110 (1%)
Query: 198 GWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXX 257
G+S LH A GR+ + L+ ++ ++ TPLHLA + + LL+
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGA--RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKA 96
Query: 258 XXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVAR 307
LH A G ++ E L+ GA +I + G D A+
Sbjct: 97 DINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAK 146
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 210 RTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXX-XXXXXXXT 268
R + +L ++ E +D D+ GRT L S C ++L E+ T
Sbjct: 53 RKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLT 112
Query: 269 SLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARD 308
+LH AA +VE L+E+GAD ++D+RG + ++AR+
Sbjct: 113 ALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 152
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 341 DKGASTNYCD-QYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVE 395
+ GA ++ D + GLT LH+AA VV L+E GAD+E +D G L LA E
Sbjct: 97 EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 152
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGR 398
+GA N ++ TPLH+AA GH+ +V L+++ AD+ + G+ PLH A G+
Sbjct: 56 RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQ 112
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 347 NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGG 397
N D +G +PLH A +G VV +LI GA + + PLHLA G
Sbjct: 28 NQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG 78
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 51/136 (37%), Gaps = 21/136 (15%)
Query: 225 SLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEM 284
L+ D G +PLH A + ++L+ T LH AA++G R +V+
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 285 LIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGA 344
L++ AD ++ G A G +V E L GA
Sbjct: 86 LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDL---------------------VANGA 124
Query: 345 STNYCDQYGLTPLHIA 360
+ C++YG P+ A
Sbjct: 125 LVSICNKYGEMPVDKA 140
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 21/126 (16%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
+ LH A G +VEMLI GA + + + +A GH ++++ L + +A + A
Sbjct: 36 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 95
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
+++G PLH A G V L+ GA V + G
Sbjct: 96 V---------------------NEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGE 134
Query: 388 APLHLA 393
P+ A
Sbjct: 135 MPVDKA 140
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 2/110 (1%)
Query: 198 GWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXX 257
G+S LH A GR+ + L+ ++ ++ TPLHLA + + LL+
Sbjct: 34 GFSPLHWACREGRSAVVEMLIMRGA--RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKA 91
Query: 258 XXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVAR 307
LH A G ++ E L+ GA +I + G D A+
Sbjct: 92 DINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAK 141
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 85/197 (43%), Gaps = 29/197 (14%)
Query: 211 TEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSL 270
T+++ +++ Y+ +D D EG TPL++AV+ I AK L++ +
Sbjct: 18 TKKVKEILQDTTYQ-VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPY 76
Query: 271 HNAAANGDRRMVEMLIEMGADPTIKDDR-GRSCFDVARDKGHIEVLEVLQRGEAVLTAAR 329
A A G ++ +++ K +R G + A +KGHI+ +++L
Sbjct: 77 LYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLL----------- 125
Query: 330 RXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAI------KGHKHVVLLLIEFGADVECQD 383
D ++ + +G T L I A+ + ++ +V LL+E GAD +D
Sbjct: 126 ---------LEDGREDIDFQNDFGYTAL-IEAVGLREGNQLYQDIVKLLMENGADQSIKD 175
Query: 384 NEGHAPLHLAVEGGRVE 400
N G + A + G E
Sbjct: 176 NSGRTAMDYANQKGYTE 192
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXX 264
A A GRTE ++ +++ L+ ++ G L A K I K+LLE
Sbjct: 79 AGAQGRTEILAYMLKHAT-PDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQN 137
Query: 265 X-XXTSLHNAAA--NGDR---RMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVL 318
T+L A G++ +V++L+E GAD +IKD+ GR+ D A KG+ E+ ++L
Sbjct: 138 DFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 349 CDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFI 405
D G TPL+IA + LI+ GAD+ Q++ +P A GR E L ++
Sbjct: 35 VDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYM 91
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 353 GLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFI 405
G+T LH A GH +V L++FG +V D++G PLH A V+ F+
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 21/110 (19%)
Query: 270 LHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAAR 329
L +++ G+ +V+ +I DP++ +D G + A GH E+++ L +
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ--------- 91
Query: 330 RXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADV 379
G + N D G TPLH AA + V L+E GA V
Sbjct: 92 ------------FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 190 DERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCA 249
D + +G + LH A G TE + LV+ +++ D +G TPLH A + ++
Sbjct: 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV--NVNAADSDGWTPLHCAASCNNVQVC 119
Query: 250 KVLLES 255
K L+ES
Sbjct: 120 KFLVES 125
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 210 RTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXX-XXXXXXXT 268
R + +L ++ E +D D+ GRT L S C ++L E+ T
Sbjct: 54 RKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLT 113
Query: 269 SLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARD 308
+LH AA +VE L+E+GAD ++D+RG + ++AR+
Sbjct: 114 ALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 153
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 343 GASTNYCD-QYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVE 395
GA ++ D + GLT LH+AA VV L+E GAD+E +D G L LA E
Sbjct: 100 GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 153
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 353 GLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFI 405
G+T LH A GH +V L++FG +V D++G PLH A V+ F+
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 21/110 (19%)
Query: 270 LHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAAR 329
L +++ G+ +V+ +I DP++ +D G + A GH E+++ L +
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ--------- 91
Query: 330 RXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADV 379
G + N D G TPLH AA + V L+E GA V
Sbjct: 92 ------------FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 190 DERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCA 249
D + +G + LH A G TE + LV+ +++ D +G TPLH A + ++
Sbjct: 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV--NVNAADSDGWTPLHCAASCNNVQVC 119
Query: 250 KVLLES 255
K L+ES
Sbjct: 120 KFLVES 125
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 21/130 (16%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
T L A+A G+ V L+E GADP I S +A G+ +++ +L
Sbjct: 38 TPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL--------- 88
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
++ N D G TPL A H V L+ GAD+ + + G+
Sbjct: 89 ------------LERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGY 136
Query: 388 APLHLAVEGG 397
P+ LAV G
Sbjct: 137 TPMDLAVALG 146
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 10/155 (6%)
Query: 168 ELAANSE-DMVSLLLRAG--LSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYE 224
+LAA E D + LR G L + DER G++ L A+AFG E + L+
Sbjct: 8 QLAAQGELDQLKEHLRKGDNLVNKPDER-----GFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 225 SLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEM 284
+ +++E + L LA +LLE T L A + VE
Sbjct: 63 HILAKERE--SALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEA 120
Query: 285 LIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQ 319
L+ GAD T + D G + D+A G+ +V +V++
Sbjct: 121 LLARGADLTTEADSGYTPMDLAVALGYRKVQQVIE 155
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%)
Query: 347 NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
N D+ G TPL A+ G V L+E+GAD E + L LA GG +
Sbjct: 30 NKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTD 83
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 22/133 (16%)
Query: 269 SLHNAAANGDRRMVEMLIEMGADPTIK-DDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
S+H AA G+ ++ + G + K D+RG + A G IE + L
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFL--------- 55
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
+ GA + + + L +A+ G+ +V LL+E D+ D G
Sbjct: 56 ------------LEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGG 103
Query: 388 APLHLAVEGGRVE 400
PL AV G V+
Sbjct: 104 TPLLYAVRGNHVK 116
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
KG++ N D G TPL + I G+ + L+E GA+V ++ EG PL +A + GR E
Sbjct: 90 KGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSE 148
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 65/173 (37%), Gaps = 23/173 (13%)
Query: 202 LHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXX 261
L VA G I LV + ++ L+ +D EG T L AV +G A+ LL
Sbjct: 39 LMVACMLGMENAIDKLV--ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT 96
Query: 262 XXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRG 321
T L + G M L+E GA+ ++ G + VA G E+++ L
Sbjct: 97 KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL--- 153
Query: 322 EAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIE 374
+ GA + D GLT A I G + V+ + E
Sbjct: 154 ------------------LELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 61/157 (38%), Gaps = 21/157 (13%)
Query: 227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLI 286
+ RD RTPL +A L+E+ T+L A N + E L+
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 287 EMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGAST 346
G++ KD G++ + G+ E+ L + GA+
Sbjct: 89 SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFL---------------------LEHGANV 127
Query: 347 NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQD 383
N + G TPL +A+ G +V L+E GAD+ +D
Sbjct: 128 NDRNLEGETPLIVASKYGRSEIVKKLLELGADISARD 164
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 347 NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRV 399
NY D Y TPL +A + G ++ + L+E +E +D EG L AV+ R+
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRL 81
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 21/130 (16%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
T L A+A G+ V L+E GADP I S +A G+ +++ +L
Sbjct: 38 TPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL--------- 88
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
++ N D G TPL A H V L+ GAD+ + + G+
Sbjct: 89 ------------LERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGY 136
Query: 388 APLHLAVEGG 397
P+ LAV G
Sbjct: 137 TPMDLAVALG 146
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 10/156 (6%)
Query: 168 ELAANSE-DMVSLLLRAG--LSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYE 224
+LAA E D + LR G L + DER G++ L A+AFG E + L+
Sbjct: 8 QLAAQGELDQLKEHLRKGDNLVNKPDER-----GFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 225 SLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEM 284
+ +++E + L LA +LLE T L A + VE
Sbjct: 63 HILAKERE--SALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEA 120
Query: 285 LIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQR 320
L+ GAD T + D G + D+A G+ +V +V++
Sbjct: 121 LLARGADLTTEADSGYTPMDLAVALGYRKVQQVIEN 156
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%)
Query: 347 NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400
N D+ G TPL A+ G V L+E+GAD E + L LA GG +
Sbjct: 30 NKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTD 83
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 22/133 (16%)
Query: 269 SLHNAAANGDRRMVEMLIEMGADPTIK-DDRGRSCFDVARDKGHIEVLEVLQRGEAVLTA 327
S+H AA G+ ++ + G + K D+RG + A G IE + L
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFL--------- 55
Query: 328 ARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387
+ GA + + + L +A+ G+ +V LL+E D+ D G
Sbjct: 56 ------------LEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGG 103
Query: 388 APLHLAVEGGRVE 400
PL AV G V+
Sbjct: 104 TPLLYAVHGNHVK 116
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 59/146 (40%), Gaps = 13/146 (8%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEA---- 323
TSLH AA + L++ GAD +D+ GR+ A + V ++L R A
Sbjct: 53 TSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLN 112
Query: 324 ---------VLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIE 374
++ AAR A N D G T LH AA + V +L+
Sbjct: 113 ARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLM 172
Query: 375 FGADVECQDNEGHAPLHLAVEGGRVE 400
A+ + QD++ PL LA G E
Sbjct: 173 HHANRDAQDDKDETPLFLAAREGSYE 198
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 342 KGASTNYC-DQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAV 394
+GA N D+ G T LH+AA L++ GAD QDN G PLH AV
Sbjct: 39 QGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAV 92
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 86/220 (39%), Gaps = 22/220 (10%)
Query: 172 NSED----MVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLD 227
N+ED ++S LL G + K G + LH+AA F R + L + +
Sbjct: 24 NNEDSTAQVISDLLAQGAELNA---TMDKTGETSLHLAARFARADAAKRL--LDAGADAN 78
Query: 228 CRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTS-LHNAAANGDRRMVEMLI 286
+D GRTPLH AV ++G ++LL + T+ L AA MVE LI
Sbjct: 79 SQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI 138
Query: 287 EMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEA------------VLTAARRXXXX 334
AD D+ G++ A + E + +L A + AAR
Sbjct: 139 TADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYE 198
Query: 335 XXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIE 374
D A+ D P +A+ + H +V LL E
Sbjct: 199 ASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDE 238
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 61/146 (41%), Gaps = 13/146 (8%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEA---- 323
T+LH AAA + L+E AD I+D+ GR+ A V ++L R A
Sbjct: 59 TALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 118
Query: 324 ---------VLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIE 374
++ AAR + A N D G + LH AA + ++L++
Sbjct: 119 ARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 178
Query: 375 FGADVECQDNEGHAPLHLAVEGGRVE 400
GA+ + Q+N PL LA G E
Sbjct: 179 NGANKDMQNNREETPLFLAAREGSYE 204
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 342 KGAST-NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAV 394
+GAS N D+ G T LH+AA L+E AD QDN G PLH AV
Sbjct: 45 QGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 98
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 84/199 (42%), Gaps = 24/199 (12%)
Query: 198 GWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXX 257
G + LH+AAA+ R++ L ++ + +D GRTPLH AV+ + G ++L+ +
Sbjct: 57 GATALHLAAAYSRSDAAKRL--LEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 114
Query: 258 XXXXXXXXXXTS-LHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLE 316
T+ L AA M+E LI AD DD G+S A +++
Sbjct: 115 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAV 174
Query: 317 VLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFG 376
VL + GA+ + + TPL +AA +G +L++
Sbjct: 175 VLLK---------------------NGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 213
Query: 377 ADVECQDNEGHAPLHLAVE 395
A+ + D+ P +A E
Sbjct: 214 ANRDITDHMDRLPRDIAQE 232
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 22/188 (11%)
Query: 185 LSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKT 244
L D ++ G + LH A + L+R + + LD R +G TPL LA
Sbjct: 77 LEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD-LDARMHDGTTPLILAARLA 135
Query: 245 SIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFD 304
G + L+ S ++LH AAA + +L++ GA+ ++++R +
Sbjct: 136 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 195
Query: 305 VARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKG 364
+A +G E +VL D A+ + D P IA +
Sbjct: 196 LAAREGSYETAKVL---------------------LDHFANRDITDHMDRLPRDIAQERM 234
Query: 365 HKHVVLLL 372
H +V LL
Sbjct: 235 HHDIVRLL 242
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 72/151 (47%), Gaps = 5/151 (3%)
Query: 169 LAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDC 228
++A+++ + +L+R + ++D R+ DG + L +AA + L+ + ++
Sbjct: 98 VSADAQGVFQILIR-NRATDLDARMH--DGTTPLILAARLAVEGMLEDLI--NSHADVNA 152
Query: 229 RDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEM 288
D G++ LH A ++ A VLL++ T L AA G ++L++
Sbjct: 153 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 212
Query: 289 GADPTIKDDRGRSCFDVARDKGHIEVLEVLQ 319
A+ I D R D+A+++ H +++ +L
Sbjct: 213 FANRDITDHMDRLPRDIAQERMHHDIVRLLD 243
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 342 KGAST-NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAV 394
+GAS N D+ G T LH+AA L+E AD QDN G PLH AV
Sbjct: 45 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 98
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 60/146 (41%), Gaps = 13/146 (8%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEA---- 323
T+LH AA + L+E AD I+D+ GR+ A V ++L R A
Sbjct: 59 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 118
Query: 324 ---------VLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIE 374
++ AAR + A N D G + LH AA + ++L++
Sbjct: 119 ARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 178
Query: 375 FGADVECQDNEGHAPLHLAVEGGRVE 400
GA+ + Q+N PL LA G E
Sbjct: 179 NGANKDMQNNREETPLFLAAREGSYE 204
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 83/199 (41%), Gaps = 24/199 (12%)
Query: 198 GWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXX 257
G + LH+AA + R++ L ++ + +D GRTPLH AV+ + G ++L+ +
Sbjct: 57 GETALHLAARYSRSDAAKRL--LEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 114
Query: 258 XXXXXXXXXXTS-LHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLE 316
T+ L AA M+E LI AD DD G+S A +++
Sbjct: 115 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAV 174
Query: 317 VLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFG 376
VL + GA+ + + TPL +AA +G +L++
Sbjct: 175 VLLK---------------------NGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 213
Query: 377 ADVECQDNEGHAPLHLAVE 395
A+ + D+ P +A E
Sbjct: 214 ANRDITDHMDRLPRDIAQE 232
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 22/188 (11%)
Query: 185 LSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKT 244
L D ++ G + LH A + L+R + + LD R +G TPL LA
Sbjct: 77 LEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD-LDARMHDGTTPLILAARLA 135
Query: 245 SIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFD 304
G + L+ S ++LH AAA + +L++ GA+ ++++R +
Sbjct: 136 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 195
Query: 305 VARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKG 364
+A +G E +VL D A+ + D P IA +
Sbjct: 196 LAAREGSYETAKVL---------------------LDHFANRDITDHMDRLPRDIAQERM 234
Query: 365 HKHVVLLL 372
H +V LL
Sbjct: 235 HHDIVRLL 242
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 72/150 (48%), Gaps = 5/150 (3%)
Query: 169 LAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDC 228
++A+++ + +L+R + ++D R+ DG + L +AA + L+ + ++
Sbjct: 98 VSADAQGVFQILIR-NRATDLDARMH--DGTTPLILAARLAVEGMLEDLI--NSHADVNA 152
Query: 229 RDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEM 288
D G++ LH A ++ A VLL++ T L AA G ++L++
Sbjct: 153 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 212
Query: 289 GADPTIKDDRGRSCFDVARDKGHIEVLEVL 318
A+ I D R D+A+++ H +++ +L
Sbjct: 213 FANRDITDHMDRLPRDIAQERMHHDIVRLL 242
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 53/131 (40%), Gaps = 22/131 (16%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
A NGD V+ + G D + GR A D G +E+LE L
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL------------ 56
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392
KGA N D++ +TPL A +GH V LL+ GAD + +G L
Sbjct: 57 ---------KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALE- 106
Query: 393 AVEGGRVEPLL 403
A + ++ LL
Sbjct: 107 ATDNQAIKALL 117
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 233 GRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADP 292
GR PLH A + + + LL T L +A G V++L+ GAD
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 94
Query: 293 TIKDDRGRSCFDVARDKGHIEVL 315
T+K G + + A D I+ L
Sbjct: 95 TVKGPDGLTALE-ATDNQAIKAL 116
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 342 KGAS-TNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAV 394
+GAS N D+ G T LH+AA L+E AD QDN G PLH AV
Sbjct: 13 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 66
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 60/146 (41%), Gaps = 13/146 (8%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEA---- 323
T+LH AA + L+E AD I+D+ GR+ A V ++L R A
Sbjct: 27 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 86
Query: 324 ---------VLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIE 374
++ AAR + A N D G + LH AA + ++L++
Sbjct: 87 ARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 146
Query: 375 FGADVECQDNEGHAPLHLAVEGGRVE 400
GA+ + Q+N PL LA G E
Sbjct: 147 NGANKDMQNNREETPLFLAAREGSYE 172
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 83/199 (41%), Gaps = 24/199 (12%)
Query: 198 GWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXX 257
G + LH+AA + R++ L ++ + +D GRTPLH AV+ + G ++L+ +
Sbjct: 25 GETALHLAARYSRSDAAKRL--LEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 82
Query: 258 XXXXXXXXXXTS-LHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLE 316
T+ L AA M+E LI AD DD G+S A +++
Sbjct: 83 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAV 142
Query: 317 VLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFG 376
VL + GA+ + + TPL +AA +G +L++
Sbjct: 143 VLLK---------------------NGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 181
Query: 377 ADVECQDNEGHAPLHLAVE 395
A+ + D+ P +A E
Sbjct: 182 ANRDITDHMDRLPRDIAQE 200
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 75/192 (39%), Gaps = 22/192 (11%)
Query: 185 LSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKT 244
L D ++ G + LH A + L+R + + LD R +G TPL LA
Sbjct: 45 LEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD-LDARMHDGTTPLILAARLA 103
Query: 245 SIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFD 304
G + L+ S ++LH AAA + +L++ GA+ ++++R +
Sbjct: 104 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 163
Query: 305 VARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKG 364
+A +G E +VL D A+ + D P IA +
Sbjct: 164 LAAREGSYETAKVL---------------------LDHFANRDITDHMDRLPRDIAQERM 202
Query: 365 HKHVVLLLIEFG 376
H +V LL E+
Sbjct: 203 HHDIVRLLDEYN 214
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 72/150 (48%), Gaps = 5/150 (3%)
Query: 169 LAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDC 228
++A+++ + +L+R + ++D R+ DG + L +AA + L+ + ++
Sbjct: 66 VSADAQGVFQILIR-NRATDLDARMH--DGTTPLILAARLAVEGMLEDLI--NSHADVNA 120
Query: 229 RDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEM 288
D G++ LH A ++ A VLL++ T L AA G ++L++
Sbjct: 121 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 180
Query: 289 GADPTIKDDRGRSCFDVARDKGHIEVLEVL 318
A+ I D R D+A+++ H +++ +L
Sbjct: 181 FANRDITDHMDRLPRDIAQERMHHDIVRLL 210
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 352 YGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAV 394
YG PL AA G + +V LLIE GAD+ QD+ G+ LH+ +
Sbjct: 120 YGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILI 162
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 20/126 (15%)
Query: 198 GWSELHVAAAFGRTEEISSLVRMKE-----YESLDCRDKEGRTPLHLAVNKTSIGCAKVL 252
G + LH+AA + E +++V M+ +E + EG+T LH+AV ++ + L
Sbjct: 37 GETALHIAALYDNLE--AAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRAL 94
Query: 253 LESXXXXXXXXXXXXTSL--HN-----------AAANGDRRMVEMLIEMGADPTIKDDRG 299
L HN AA G +V +LIE GAD +D G
Sbjct: 95 LARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLG 154
Query: 300 RSCFDV 305
+ +
Sbjct: 155 NTVLHI 160
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 342 KGAS-TNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAV 394
+GAS N D+ G T LH+AA L+E AD QDN G PLH AV
Sbjct: 46 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 99
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 60/146 (41%), Gaps = 13/146 (8%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEA---- 323
T+LH AA + L+E AD I+D+ GR+ A V ++L R A
Sbjct: 60 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 119
Query: 324 ---------VLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIE 374
++ AAR + A N D G + LH AA + ++L++
Sbjct: 120 ARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 179
Query: 375 FGADVECQDNEGHAPLHLAVEGGRVE 400
GA+ + Q+N PL LA G E
Sbjct: 180 NGANKDMQNNREETPLFLAAREGSYE 205
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 84/201 (41%), Gaps = 24/201 (11%)
Query: 196 KDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLES 255
+ G + LH+AA + R++ L ++ + +D GRTPLH AV+ + G ++L+ +
Sbjct: 56 RTGETALHLAARYSRSDAAKRL--LEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 113
Query: 256 XXXXXXXXXXXXTS-LHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEV 314
T+ L AA M+E LI AD DD G+S A +++
Sbjct: 114 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDA 173
Query: 315 LEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIE 374
VL + GA+ + + TPL +AA +G +L++
Sbjct: 174 AVVLLK---------------------NGANKDMQNNREETPLFLAAREGSYETAKVLLD 212
Query: 375 FGADVECQDNEGHAPLHLAVE 395
A+ + D+ P +A E
Sbjct: 213 HFANRDITDHMDRLPRDIAQE 233
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 75/191 (39%), Gaps = 22/191 (11%)
Query: 185 LSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKT 244
L D ++ G + LH A + L+R + + LD R +G TPL LA
Sbjct: 78 LEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD-LDARMHDGTTPLILAARLA 136
Query: 245 SIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFD 304
G + L+ S ++LH AAA + +L++ GA+ ++++R +
Sbjct: 137 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 196
Query: 305 VARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKG 364
+A +G E +VL D A+ + D P IA +
Sbjct: 197 LAAREGSYETAKVL---------------------LDHFANRDITDHMDRLPRDIAQERM 235
Query: 365 HKHVVLLLIEF 375
H +V LL E+
Sbjct: 236 HHDIVRLLDEY 246
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 72/150 (48%), Gaps = 5/150 (3%)
Query: 169 LAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDC 228
++A+++ + +L+R + ++D R+ DG + L +AA + L+ + ++
Sbjct: 99 VSADAQGVFQILIR-NRATDLDARMH--DGTTPLILAARLAVEGMLEDLI--NSHADVNA 153
Query: 229 RDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEM 288
D G++ LH A ++ A VLL++ T L AA G ++L++
Sbjct: 154 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 213
Query: 289 GADPTIKDDRGRSCFDVARDKGHIEVLEVL 318
A+ I D R D+A+++ H +++ +L
Sbjct: 214 FANRDITDHMDRLPRDIAQERMHHDIVRLL 243
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 342 KGAS-TNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAV 394
+GAS N D+ G T LH+AA L+E AD QDN G PLH AV
Sbjct: 10 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAV 63
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 61/146 (41%), Gaps = 13/146 (8%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEA---- 323
T+LH AA + L+E AD I+D+ GR+ A V ++L R A
Sbjct: 24 TALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLD 83
Query: 324 ---------VLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIE 374
++ AAR + A N D G + LH AA + ++L++
Sbjct: 84 ARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 143
Query: 375 FGADVECQDNEGHAPLHLAVEGGRVE 400
GA+ + Q+N+ PL LA G E
Sbjct: 144 NGANKDMQNNKEETPLFLAAREGSYE 169
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 82/199 (41%), Gaps = 24/199 (12%)
Query: 198 GWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXX 257
G + LH+AA + R++ L ++ +D GRTPLH AV+ + G ++LL +
Sbjct: 22 GETALHLAARYSRSDAAKRL--LEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRA 79
Query: 258 XXXXXXXXXXTS-LHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLE 316
T+ L AA M+E LI AD DD G+S A +++
Sbjct: 80 TDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAV 139
Query: 317 VLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFG 376
VL + GA+ + + TPL +AA +G +L++
Sbjct: 140 VLLK---------------------NGANKDMQNNKEETPLFLAAREGSYETAKVLLDHF 178
Query: 377 ADVECQDNEGHAPLHLAVE 395
A+ + D+ P +A E
Sbjct: 179 ANRDITDHMDRLPRDIAQE 197
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 72/150 (48%), Gaps = 5/150 (3%)
Query: 169 LAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDC 228
++A+++ + +LLR + ++D R+ DG + L +AA + L+ + ++
Sbjct: 63 VSADAQGVFQILLR-NRATDLDARMH--DGTTPLILAARLALEGMLEDLI--NSHADVNA 117
Query: 229 RDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEM 288
D G++ LH A ++ A VLL++ T L AA G ++L++
Sbjct: 118 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDH 177
Query: 289 GADPTIKDDRGRSCFDVARDKGHIEVLEVL 318
A+ I D R D+A+++ H +++ +L
Sbjct: 178 FANRDITDHMDRLPRDIAQERMHHDIVRLL 207
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 75/191 (39%), Gaps = 22/191 (11%)
Query: 185 LSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKT 244
L D ++ G + LH A + L+R + + LD R +G TPL LA
Sbjct: 42 LEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATD-LDARMHDGTTPLILAARLA 100
Query: 245 SIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFD 304
G + L+ S ++LH AAA + +L++ GA+ +++++ +
Sbjct: 101 LEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLF 160
Query: 305 VARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKG 364
+A +G E +VL D A+ + D P IA +
Sbjct: 161 LAAREGSYETAKVL---------------------LDHFANRDITDHMDRLPRDIAQERM 199
Query: 365 HKHVVLLLIEF 375
H +V LL E+
Sbjct: 200 HHDIVRLLDEY 210
>pdb|2RR3|A Chain A, Solution Structure Of The Complex Between Human Vap-A Msp
Domain And Human Osbp Ffat Motif
Length = 130
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 37 VAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQSQIPPTFPRSPSDRFLIKATVFG 96
V FKV+T++P ++ V P SG++ P + T+ ++L+P P +F+++ T+F
Sbjct: 42 VCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVMLQPFDYDP---NEKSKHKFMVQ-TIFA 97
Query: 97 SADSVNSLCV---TLPDGSTQDVKFKIAFVGP 125
++ + V PD D K + F P
Sbjct: 98 PPNTSDMEAVWKEAKPD-ELMDSKLRCVFEMP 128
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 46/114 (40%), Gaps = 21/114 (18%)
Query: 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXX 332
A NGD V+ + G D + GR A D G +E+LE L
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL------------ 61
Query: 333 XXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEG 386
KGA N D++ +TPL A +GH V LL+ GAD + +G
Sbjct: 62 ---------KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG 106
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 233 GRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADP 292
GR PLH A + + + LL T L +A G V++L+ GAD
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 99
Query: 293 TIKDDRGRSCFDVARDKGHIEVL 315
T+K G + F+ A D I+ L
Sbjct: 100 TVKGPDGLTAFE-ATDNQAIKAL 121
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 26/58 (44%)
Query: 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRV 399
KG N + G PLH AA G ++ L+ GAD+ D PL AV G V
Sbjct: 29 KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHV 86
>pdb|1Z9O|A Chain A, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
pdb|1Z9O|B Chain B, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
pdb|1Z9O|C Chain C, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
pdb|1Z9O|D Chain D, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
pdb|1Z9O|E Chain E, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
pdb|1Z9O|F Chain F, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
Length = 128
Score = 38.1 bits (87), Expect = 0.009, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 26/36 (72%)
Query: 37 VAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKP 72
V FKV+T++P ++ V P SG++ P + T+ ++L+P
Sbjct: 43 VCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQP 78
>pdb|1Z9L|A Chain A, 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp
Homology Domain
Length = 128
Score = 37.0 bits (84), Expect = 0.019, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 37 VAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKP 72
V FKV+T++P ++ V P SG++ P + T+ + L+P
Sbjct: 43 VCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVXLQP 78
>pdb|2CRI|A Chain A, Solution Structure Of The Msp Domain Of Mouse Vamp-
Associated Proteina
Length = 147
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 26/36 (72%)
Query: 37 VAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKP 72
V FKV+T++P ++ V P SG++ P + T+ ++L+P
Sbjct: 47 VCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQP 82
>pdb|1WIC|A Chain A, Solution Structure Of The Msp Domain Of Riken Cdna
6030424e15
Length = 152
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 4 LLAVSEQEVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQ 63
LL +S E L ++ S + + +++ + VAFKV+T++P K+ V P + P A
Sbjct: 18 LLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGA- 76
Query: 64 TTLQIILKPQSQIPPTFPRSPSDRFLIKA 92
++ II+ P + S DRFLI A
Sbjct: 77 -SIDIIVSPHGGL----TVSAQDRFLIMA 100
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 45/118 (38%), Gaps = 14/118 (11%)
Query: 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEA---- 323
L AAA G V L+E GADP + GR V G +V E+L A
Sbjct: 14 AGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNC 72
Query: 324 ---------VLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLL 372
V AAR GA + CD +G P+ +A +GH+ + L
Sbjct: 73 ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYL 130
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 2/118 (1%)
Query: 202 LHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXX 261
L AAA G+ E + L ++ + ++ GR P+ + + ++ +LL
Sbjct: 16 LATAAARGQVETVRQL--LEAGADPNALNRFGRRPIQVMMMGSAQVAELLLLHGAEPNCA 73
Query: 262 XXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQ 319
+H+AA G + +L GA + D GR D+A ++GH ++ L
Sbjct: 74 DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLH 131
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 34.7 bits (78), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 353 GLTPLHIAAIKGHKHVVLLLIEFGADV-ECQDNEGHAPLHLAVE 395
G TPLH+A I +V LL + GAD+ + + G PLHLAVE
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVE 201
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 226 LDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXX-XXTSLHNAAANGDRRMVEM 284
L+ + +G TPLH+AV ++L ++ T LH A ++E+
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 285 LIEMGADPTIKDDRGRS 301
L++ GADPT + GR+
Sbjct: 211 LLKAGADPTARMYGGRT 227
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 8/114 (7%)
Query: 193 VKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKE---GRTPLHLAVNKTSIGCA 249
+ DG + LHVA E +VR+ D E GRTPLHLAV +
Sbjct: 153 AENYDGHTPLHVAVIHKDAE----MVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVL 208
Query: 250 KVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA-DPTIKDDRGRSC 302
++LL++ T L +A + + +L GA +P D+ C
Sbjct: 209 ELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPC 262
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 21/41 (51%)
Query: 353 GLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLA 393
G T LH+AAI G V L GA V + GH LHLA
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLA 85
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 80/219 (36%), Gaps = 20/219 (9%)
Query: 198 GWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXX 257
G + LH+AA G + L + ++ G T LHLA + CA VLL+
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGA--GVLVAERGGHTALHLACRVRAHTCACVLLQPRP 102
Query: 258 XXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPT----IKDDRGRSCFDVARDKGHIE 313
+ + D ++ +P +D+ R + GH
Sbjct: 103 SHPRDASDTYLT-QSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP 161
Query: 314 VLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQY-GLTPLHIAAIKGHKHVVLLL 372
+ + +A + R D GA N + G TPLH+A V+ LL
Sbjct: 162 LHVAVIHKDAEMVRLLR----------DAGADLNKPEPTCGRTPLHLAVEAQAASVLELL 211
Query: 373 IEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWG 411
++ GAD + G PL A+ R P+L L+ G
Sbjct: 212 LKAGADPTARMYGGRTPLGSALL--RPNPILARLLRAHG 248
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 34.7 bits (78), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 353 GLTPLHIAAIKGHKHVVLLLIEFGADV-ECQDNEGHAPLHLAVE 395
G TPLH+A I +V LL + GAD+ + + G PLHLAVE
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVE 201
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 226 LDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXX-XXTSLHNAAANGDRRMVEM 284
L+ + +G TPLH+AV ++L ++ T LH A ++E+
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 285 LIEMGADPTIKDDRGRS 301
L++ GADPT + GR+
Sbjct: 211 LLKAGADPTARMYGGRT 227
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 8/114 (7%)
Query: 193 VKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKE---GRTPLHLAVNKTSIGCA 249
+ DG + LHVA E +VR+ D E GRTPLHLAV +
Sbjct: 153 AENYDGHTPLHVAVIHKDAE----MVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVL 208
Query: 250 KVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGA-DPTIKDDRGRSC 302
++LL++ T L +A + + +L GA +P D+ C
Sbjct: 209 ELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPC 262
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 21/41 (51%)
Query: 353 GLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLA 393
G T LH+AAI G V L GA V + GH LHLA
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLA 85
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 80/219 (36%), Gaps = 20/219 (9%)
Query: 198 GWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXX 257
G + LH+AA G + L + ++ G T LHLA + CA VLL+
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGA--GVLVAERGGHTALHLACRVRAHTCACVLLQPRP 102
Query: 258 XXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPT----IKDDRGRSCFDVARDKGHIE 313
+ + D ++ +P +D+ R + GH
Sbjct: 103 SHPRDASDTYLT-QSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP 161
Query: 314 VLEVLQRGEAVLTAARRXXXXXXXXXXDKGASTNYCDQY-GLTPLHIAAIKGHKHVVLLL 372
+ + +A + R D GA N + G TPLH+A V+ LL
Sbjct: 162 LHVAVIHKDAEMVRLLR----------DAGADLNKPEPTCGRTPLHLAVEAQAASVLELL 211
Query: 373 IEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWG 411
++ GAD + G PL A+ R P+L L+ G
Sbjct: 212 LKAGADPTARMYGGRTPLGSALL--RPNPILARLLRAHG 248
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 237 LHLAV---NKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPT 293
LHLAV N+ S+ ++++ T+LH AA +++L++ A
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 253
Query: 294 IKDDRGRSCFDVARDKGHIEVLEVLQRGEA 323
++ G + D+AR K H E E+L++ +A
Sbjct: 254 TVNEAGETALDIARKKHHKECEELLEQAQA 283
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 202 LHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXX 261
L AAA GR EE+ +L ++ + + + GR P+ + + ++ +LL
Sbjct: 16 LATAAARGRVEEVRAL--LEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCA 73
Query: 262 XXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQ 319
+H+AA G + +L GA ++D GR D+A + GH +V L+
Sbjct: 74 DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 131
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 326 TAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQD 383
TAA R + GA+ N + YG P+ + + G V LL+ GA+ C D
Sbjct: 18 TAAARGRVEEVRALLEAGANPNAPNSYGRRPIQV-MMMGSARVAELLLLHGAEPNCAD 74
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 237 LHLAV---NKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPT 293
LHLAV N+ S+ ++++ T+LH AA +++L++ A
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 234
Query: 294 IKDDRGRSCFDVARDKGHIEVLEVLQRGEA 323
++ G + D+AR K H E E+L++ +A
Sbjct: 235 TVNEAGETALDIARKKHHKECEELLEQAQA 264
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 16/82 (19%)
Query: 345 STNYCDQY--GLTPLHIAAIKGHKHVVLLLIEFGADVECQDNE--------------GHA 388
+ +Y D Y G T LHIA + + +V LL+E GADV+ N G
Sbjct: 91 NASYTDSYYKGQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGEL 150
Query: 389 PLHLAVEGGRVEPLLFIWLKQW 410
PL LA ++ + F+ W
Sbjct: 151 PLSLAACTNQLAIVKFLLQNSW 172
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 350 DQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLA 393
++ G+T LH A + +V LI GA+V D+ G PLH A
Sbjct: 51 NEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCA 94
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 21/110 (19%)
Query: 270 LHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAAR 329
L +AA G+ +V+ ++ DP+ ++ G + A + +++ L +TA
Sbjct: 25 LLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFL------ITA-- 76
Query: 330 RXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADV 379
GA+ N D +G TPLH AA + + L++ GA +
Sbjct: 77 -------------GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI 113
>pdb|3IKK|A Chain A, Crystal Structure Analysis Of Msp Domain
pdb|3IKK|B Chain B, Crystal Structure Analysis Of Msp Domain
Length = 127
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 37 VAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQSQIP 77
V FKV+T++P ++ V P SG++ A + ++L+P P
Sbjct: 42 VCFKVKTTAPRRYCVRPNSGIIDAGASINVSVMLQPFDYDP 82
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
Query: 202 LHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESXXXXXX 261
L AAA GR EE+ +L+ + + GR P+ + + ++ +LL
Sbjct: 16 LATAAARGRVEEVRALLEAGALP--NAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCA 73
Query: 262 XXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQ 319
+H+AA G + +L GA ++D GR D+A + GH +V L+
Sbjct: 74 DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 131
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 326 TAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQD 383
TAA R + GA N + YG P+ + + G V LL+ GA+ C D
Sbjct: 18 TAAARGRVEEVRALLEAGALPNAPNSYGRRPIQV-MMMGSARVAELLLLHGAEPNCAD 74
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/146 (20%), Positives = 60/146 (41%), Gaps = 13/146 (8%)
Query: 270 LHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLT--- 326
LH AA D ++V++L+ G D + DD+G + A D G+ + +++ + L
Sbjct: 66 LHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFYG 125
Query: 327 -AARRXXXXXXXXXXDKGASTNYCDQYG--------LTPLHIAAIKGHKHVVLLLIEFGA 377
+ D + + + L+ +HI GH +LL+++
Sbjct: 126 KTGWKTSFYHAVXLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDXXILLLDYXT 185
Query: 378 DVECQDNEGHAP-LHLAVEGGRVEPL 402
++ P + LA++ +E L
Sbjct: 186 STNTNNSLLFIPDIKLAIDNKDIEXL 211
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 356 PLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQW 410
PLH AA +V +L+ G D D++G+ L+ AV+ G + + K W
Sbjct: 65 PLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNW 119
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 62/178 (34%), Gaps = 28/178 (15%)
Query: 230 DKEGRTPLHLAVNKTSIGCAKVLLES------XXXXXXXXXXXXTSLHNAAANGDRRMVE 283
D G T LH +V+ + + LL+S T+L D V
Sbjct: 108 DSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVL 167
Query: 284 MLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRXXXXXXXXXXDKG 343
L +G G++ +A G ++V++ L E
Sbjct: 168 QLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACE--------------------- 206
Query: 344 ASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEF-GADVECQDNEGHAPLHLAVEGGRVE 400
A N D G T L A GHK + LL+ D+ D +G L +A++ G+ E
Sbjct: 207 ADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSE 264
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 70/147 (47%), Gaps = 7/147 (4%)
Query: 176 MVSLLLRAGLSIEIDERVKTKDGWSELHVAA--AFGRTEEISSLVRMKEYESLDCR-DKE 232
+V LL +G+ ++D+ + + G+S + + A ++I +++++ +++ + +
Sbjct: 126 VVQQLLDSGVC-KVDK--QNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQA 182
Query: 233 GRTPLHLAVNKTSIGCAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEM-GAD 291
G+T L LAV+ + K LL T+L A +G + + +L+ + D
Sbjct: 183 GQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD 242
Query: 292 PTIKDDRGRSCFDVARDKGHIEVLEVL 318
++ D G + VA D G E+ +L
Sbjct: 243 ISLTDRDGSTALMVALDAGQSEIASML 269
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 353 GLTPLHIAAIKGHKHVVLLLIEFGADVECQ 382
G T LHIA + KH V LL+E GADV Q
Sbjct: 93 GQTALHIAIERRCKHYVELLVEKGADVHAQ 122
>pdb|3ERR|A Chain A, Microtubule Binding Domain From Mouse Cytoplasmic Dynein
As A Fusion With Seryl-Trna Synthetase
pdb|3ERR|B Chain B, Microtubule Binding Domain From Mouse Cytoplasmic Dynein
As A Fusion With Seryl-Trna Synthetase
Length = 536
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
Query: 154 LSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAF---GR 210
L+ A E+ R EL N+E+++ LL +E+ W ++ + GR
Sbjct: 392 LTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGR 451
Query: 211 TEEISSLVRMKEYES----LDCRDKEGRTPLHLAVNKTSIGCAKVL 252
E S + ++++ L RD EGR +N T++ ++L
Sbjct: 452 YRETHSCSALLDWQARRANLRYRDPEGRVRYAYTLNNTALATPRIL 497
>pdb|1SRY|A Chain A, Refined Crystal Structure Of The Seryl-Trna Synthetase
From Thermus Thermophilus At 2.5 Angstroms Resolution
pdb|1SRY|B Chain B, Refined Crystal Structure Of The Seryl-Trna Synthetase
From Thermus Thermophilus At 2.5 Angstroms Resolution
pdb|1SER|A Chain A, The 2.9 Angstroms Crystal Structure Of T. Thermophilus
Seryl-Trna Synthetase Complexed With Trna Ser
pdb|1SER|B Chain B, The 2.9 Angstroms Crystal Structure Of T. Thermophilus
Seryl-Trna Synthetase Complexed With Trna Ser
pdb|1SES|A Chain A, Crystal Structures At 2.5 Angstroms Resolution Of
Seryl-Trna Synthetase Complexed With Two Different
Analogues Of Seryl-Adenylate
pdb|1SES|B Chain B, Crystal Structures At 2.5 Angstroms Resolution Of
Seryl-Trna Synthetase Complexed With Two Different
Analogues Of Seryl-Adenylate
pdb|1SET|A Chain A, Crystal Structures At 2.5 Angstroms Resolution Of
Seryl-Trna Synthetase Complexed With Two Different
Analogues Of Seryl-Adenylate
pdb|1SET|B Chain B, Crystal Structures At 2.5 Angstroms Resolution Of
Seryl-Trna Synthetase Complexed With Two Different
Analogues Of Seryl-Adenylate
Length = 421
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
Query: 154 LSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAF---GR 210
L+ A E+ R EL N+E+++ LL +E+ W ++ + GR
Sbjct: 283 LTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGR 342
Query: 211 TEEISSLVRMKEYES----LDCRDKEGRTPLHLAVNKTSIGCAKVL 252
E S + ++++ L RD EGR +N T++ ++L
Sbjct: 343 YRETHSCSALLDWQARRANLRYRDPEGRVRYAYTLNNTALATPRIL 388
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 12/134 (8%)
Query: 191 ERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAV---NKTSIG 247
E VKT+D FG + + V + E L + T LHLAV ++TS+
Sbjct: 136 EAVKTRD---------IFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 186
Query: 248 CAKVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVAR 307
L+++ T+LH + +++L+ A I ++ G + D+A+
Sbjct: 187 IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 246
Query: 308 DKGHIEVLEVLQRG 321
H E+L +
Sbjct: 247 RLKHEHCEELLTQA 260
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 29.6 bits (65), Expect = 2.9, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 2/129 (1%)
Query: 190 DERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCA 249
D + DG + L +AA + L+ + ++ D G++ LH A ++ A
Sbjct: 7 DLDARMHDGTTPLILAARLALEGMLEDLI--NSHADVNAVDDLGKSALHWAAAVNNVDAA 64
Query: 250 KVLLESXXXXXXXXXXXXTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDK 309
VLL++ T L AA G ++L++ A+ I D R D+A+++
Sbjct: 65 VVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 124
Query: 310 GHIEVLEVL 318
H +++ +L
Sbjct: 125 MHHDIVRLL 133
Score = 28.9 bits (63), Expect = 5.7, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 35/77 (45%)
Query: 324 VLTAARRXXXXXXXXXXDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQD 383
++ AAR + A N D G + LH AA + ++L++ GA+ + Q+
Sbjct: 19 LILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 78
Query: 384 NEGHAPLHLAVEGGRVE 400
N+ PL LA G E
Sbjct: 79 NKEETPLFLAAREGSYE 95
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 353 GLTPLHIAAIKGHKHVVLLLIEFGADVECQ 382
G T LHIA + KH V LL+ GADV Q
Sbjct: 91 GQTALHIAIERRCKHYVELLVAQGADVHAQ 120
>pdb|3R9A|A Chain A, Human Alanine-Glyoxylate Aminotransferase In Complex
With The Tpr Domain Of Human Pex5p
pdb|3R9A|C Chain C, Human Alanine-Glyoxylate Aminotransferase In Complex
With The Tpr Domain Of Human Pex5p
Length = 394
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 47 HKFLVNPPSGLVQPLAQTTLQIILKP-QSQIPP 78
HK LV PP L++PL+ Q++L P S +PP
Sbjct: 6 HKLLVTPPKALLKPLSIPN-QLLLGPGPSNLPP 37
>pdb|1J04|A Chain A, Structural Mechanism Of Enzyme Mistargeting In
Hereditary Kidney Stone Disease In Vitro
Length = 392
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 47 HKFLVNPPSGLVQPLAQTTLQIILKP-QSQIPP 78
HK LV PP L++PL+ Q++L P S +PP
Sbjct: 4 HKLLVTPPKALLKPLSIPN-QLLLGPGPSNLPP 35
>pdb|1H0C|A Chain A, The Crystal Structure Of Human Alanine:glyoxylate
Aminotransferase
Length = 392
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 47 HKFLVNPPSGLVQPLAQTTLQIILKP-QSQIPP 78
HK LV PP L++PL+ Q++L P S +PP
Sbjct: 4 HKLLVTPPKALLKPLSIPN-QLLLGPGPSNLPP 35
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 228 CRDK--EGRTPLHLAVNKTSIGCAKVLLES 255
C D+ +G + LH+A+ K S+ C K+L+E+
Sbjct: 83 CTDEFYQGHSALHIAIEKRSLQCVKLLVEN 112
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 228 CRDK--EGRTPLHLAVNKTSIGCAKVLLES 255
C D+ +G + LH+A+ K S+ C K+L+E+
Sbjct: 96 CTDEFYQGHSALHIAIEKRSLQCVKLLVEN 125
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 7/110 (6%)
Query: 224 ESLDCR------DKEGRTPLHLAVNKTSIGCAKVLL-ESXXXXXXXXXXXXTSLHNAAAN 276
E LD R DK G T L+ A + + L + T+LH AA
Sbjct: 91 ECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWK 150
Query: 277 GDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLT 326
G +V++L+ GA +++ + FD A + +L+ Q +AV T
Sbjct: 151 GYADIVQLLLAKGARTDLRNIEKKLAFDXATNAACASLLKKKQGTDAVRT 200
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 347 NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNE 385
N ++ G T LH AA KG+ +V LL+ GA + ++ E
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIE 172
>pdb|2RAD|A Chain A, Crystal Structure Of The Succinoglycan Biosynthesis
Protein. Northeast Structural Genomics Consortium Target
Bcr135
pdb|2RAD|B Chain B, Crystal Structure Of The Succinoglycan Biosynthesis
Protein. Northeast Structural Genomics Consortium Target
Bcr135
pdb|3B55|A Chain A, Crystal Structure Of The Q81bn2_baccr Protein From
Bacillus Cereus. Nesg Target Bcr135
Length = 451
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 8/135 (5%)
Query: 98 ADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSN-GDFNAVKSILKRQKMILAGLSS 156
ADS + VT P + Q K+ A P + ++ D +K+ + ++ G ++
Sbjct: 25 ADSKTEVSVTAPYNTNQIAKWLEAHAKPLKTTNPTASLNDLKPLKNXVGSASIVGLGEAT 84
Query: 157 AEAESLY----RVATELAANSEDMVSLLLRAGL--SIEIDERVKTKDGWSELHVAAAFGR 210
A ++ R+ L + + +L+L G ++E+D V T G H+ F
Sbjct: 85 HGAHEVFTXKHRIVKYLVS-EKGFTNLVLEEGWDRALELDRYVLTGKGNPSQHLTPVFKT 143
Query: 211 TEEISSLVRMKEYES 225
E + L +++Y +
Sbjct: 144 KEXLDLLDWIRQYNA 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,612,600
Number of Sequences: 62578
Number of extensions: 381307
Number of successful extensions: 1777
Number of sequences better than 100.0: 134
Number of HSP's better than 100.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 791
Number of HSP's gapped (non-prelim): 535
length of query: 418
length of database: 14,973,337
effective HSP length: 101
effective length of query: 317
effective length of database: 8,652,959
effective search space: 2742988003
effective search space used: 2742988003
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)