Query 048601
Match_columns 418
No_of_seqs 378 out of 3019
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 19:19:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048601.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048601hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 4.6E-51 1.6E-55 390.4 31.7 312 86-415 48-371 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 8.7E-51 3E-55 388.5 31.3 314 85-416 14-339 (437)
3 1wdy_A 2-5A-dependent ribonucl 100.0 3.7E-47 1.3E-51 342.1 29.9 266 122-415 3-280 (285)
4 4g8k_A 2-5A-dependent ribonucl 100.0 3.7E-46 1.3E-50 344.1 31.3 280 120-415 21-328 (337)
5 3d9h_A CDNA FLJ77766, highly s 100.0 1.6E-44 5.3E-49 324.8 23.6 260 121-414 12-280 (285)
6 1wdy_A 2-5A-dependent ribonucl 100.0 3.4E-43 1.2E-47 316.2 29.5 263 86-384 6-284 (285)
7 2fo1_E LIN-12 protein; beta-ba 100.0 2.4E-45 8.3E-50 342.8 15.8 258 120-410 90-370 (373)
8 3utm_A Tankyrase-1; tankyrase, 100.0 2.2E-42 7.5E-47 320.5 28.9 284 87-410 26-333 (351)
9 1yyh_A HN1;, notch 1, ankyrin 100.0 4.2E-43 1.4E-47 310.2 22.0 240 121-410 7-247 (253)
10 2xai_A ASB-9, ankyrin repeat a 100.0 1.9E-43 6.3E-48 313.9 19.7 249 123-406 2-258 (261)
11 3ljn_A Hypothetical protein; a 100.0 4.2E-44 1.4E-48 333.9 16.1 258 120-408 16-311 (364)
12 4g8k_A 2-5A-dependent ribonucl 100.0 1.2E-41 4E-46 314.0 29.8 280 85-382 25-330 (337)
13 3utm_A Tankyrase-1; tankyrase, 100.0 9.2E-42 3.1E-46 316.3 28.1 264 122-415 22-307 (351)
14 3b7b_A Euchromatic histone-lys 100.0 6.7E-42 2.3E-46 299.5 24.2 224 154-406 6-230 (237)
15 2xai_A ASB-9, ankyrin repeat a 100.0 6.6E-42 2.3E-46 303.9 22.5 220 158-410 2-221 (261)
16 1k1a_A B-cell lymphoma 3-encod 100.0 5.7E-42 1.9E-46 300.7 21.8 221 159-408 9-238 (241)
17 1yyh_A HN1;, notch 1, ankyrin 100.0 9.4E-42 3.2E-46 301.5 22.9 219 130-377 29-247 (253)
18 3ljn_A Hypothetical protein; a 100.0 4.3E-42 1.5E-46 320.3 20.3 223 155-408 16-266 (364)
19 3aji_A 26S proteasome non-ATPa 100.0 1.2E-41 4.2E-46 296.6 21.4 192 194-408 36-227 (231)
20 1oy3_D Transcription factor in 100.0 9.7E-42 3.3E-46 306.4 20.6 253 120-399 5-271 (282)
21 3d9h_A CDNA FLJ77766, highly s 100.0 1.7E-41 5.7E-46 305.0 22.0 262 85-381 15-282 (285)
22 3aji_A 26S proteasome non-ATPa 100.0 5.1E-41 1.8E-45 292.7 23.7 227 123-379 5-231 (231)
23 2dzn_A Probable 26S proteasome 100.0 7.4E-41 2.5E-45 291.0 23.8 190 194-407 32-226 (228)
24 4b93_B Ankyrin repeat domain-c 100.0 1.7E-41 5.8E-46 301.6 17.9 224 119-398 6-230 (269)
25 2f8y_A Notch homolog 1, transl 100.0 5.3E-41 1.8E-45 290.9 20.4 215 172-414 2-217 (223)
26 2fo1_E LIN-12 protein; beta-ba 100.0 5.4E-41 1.8E-45 313.4 21.5 258 85-379 94-372 (373)
27 1k1a_A B-cell lymphoma 3-encod 100.0 6.2E-41 2.1E-45 294.0 20.5 229 120-377 5-240 (241)
28 4b93_B Ankyrin repeat domain-c 100.0 1.8E-41 6.3E-46 301.4 16.8 232 86-379 12-245 (269)
29 3b7b_A Euchromatic histone-lys 100.0 5.4E-40 1.9E-44 287.3 24.2 224 121-374 8-231 (237)
30 3eu9_A Huntingtin-interacting 100.0 9.1E-40 3.1E-44 286.2 25.2 229 156-411 6-235 (240)
31 1s70_B 130 kDa myosin-binding 100.0 5.5E-40 1.9E-44 297.6 17.9 250 130-409 4-287 (299)
32 2f8y_A Notch homolog 1, transl 100.0 3.8E-39 1.3E-43 279.2 21.9 217 135-380 2-218 (223)
33 3kea_A K1L; tropism, ANK repea 100.0 2.3E-40 8E-45 297.5 14.0 218 122-380 29-248 (285)
34 1oy3_D Transcription factor in 100.0 4.3E-39 1.5E-43 289.1 21.7 200 194-416 5-253 (282)
35 3eu9_A Huntingtin-interacting 100.0 2.3E-38 7.8E-43 277.3 24.9 230 121-380 6-237 (240)
36 3kea_A K1L; tropism, ANK repea 100.0 2.5E-39 8.4E-44 290.8 15.2 239 132-414 7-247 (285)
37 2rfa_A Transient receptor pote 100.0 2.2E-37 7.5E-42 269.8 21.5 193 197-411 2-222 (232)
38 3hra_A Ankyrin repeat family p 100.0 9.2E-37 3.2E-41 259.8 23.1 190 196-407 3-199 (201)
39 4gpm_A Engineered protein OR26 100.0 3.1E-37 1.1E-41 253.7 19.3 159 235-416 6-164 (169)
40 1ikn_D Protein (I-kappa-B-alph 100.0 1.4E-38 4.9E-43 278.1 11.9 197 194-413 4-209 (236)
41 2rfa_A Transient receptor pote 100.0 1.2E-36 4.2E-41 265.1 22.4 202 159-383 3-227 (232)
42 2dzn_A Probable 26S proteasome 100.0 1.1E-36 3.8E-41 264.6 21.6 195 198-415 2-202 (228)
43 1s70_B 130 kDa myosin-binding 100.0 1.1E-37 3.7E-42 282.5 15.5 226 118-375 34-286 (299)
44 1sw6_A Regulatory protein SWI6 100.0 3.2E-38 1.1E-42 289.1 10.4 256 95-397 29-327 (327)
45 1ikn_D Protein (I-kappa-B-alph 100.0 1.4E-37 4.7E-42 271.9 10.3 181 194-397 41-230 (236)
46 4gpm_A Engineered protein OR26 100.0 1.4E-35 4.8E-40 243.8 21.2 159 200-381 6-164 (169)
47 2etb_A Transient receptor pote 100.0 1.3E-36 4.5E-41 269.0 14.6 190 198-410 2-245 (256)
48 2pnn_A Transient receptor pote 100.0 1.8E-36 6.2E-41 270.8 12.2 195 194-409 9-256 (273)
49 3hra_A Ankyrin repeat family p 100.0 2E-34 7E-39 245.3 23.6 192 161-376 7-201 (201)
50 2pnn_A Transient receptor pote 100.0 2E-35 6.9E-40 264.0 16.9 224 120-390 9-271 (273)
51 2etb_A Transient receptor pote 100.0 8.5E-35 2.9E-39 257.4 19.1 189 177-379 22-247 (256)
52 3jxi_A Vanilloid receptor-rela 100.0 2.8E-35 9.4E-40 261.2 13.2 193 195-410 2-249 (260)
53 3jxi_A Vanilloid receptor-rela 100.0 5.6E-34 1.9E-38 252.7 17.9 211 123-380 4-252 (260)
54 4hbd_A KN motif and ankyrin re 100.0 1.6E-34 5.5E-39 258.1 12.6 189 199-408 77-272 (276)
55 2rfm_A Putative ankyrin repeat 100.0 1.2E-33 4E-38 238.8 16.5 162 227-409 29-190 (192)
56 3v30_A DNA-binding protein rfx 100.0 5.2E-33 1.8E-37 230.4 17.2 170 198-389 2-171 (172)
57 1sw6_A Regulatory protein SWI6 100.0 2.9E-35 1E-39 269.5 3.9 261 134-416 29-311 (327)
58 2y1l_E Darpin-8.4; hydrolase-i 100.0 1.2E-32 4E-37 227.6 18.1 157 230-407 11-167 (169)
59 3v31_A Ankyrin repeat family A 100.0 1.4E-32 4.8E-37 226.7 17.6 153 233-406 3-155 (167)
60 2vge_A RELA-associated inhibit 100.0 2.1E-35 7.3E-40 256.0 -0.2 203 177-406 1-208 (229)
61 2rfm_A Putative ankyrin repeat 100.0 4.4E-32 1.5E-36 229.1 18.7 160 194-376 31-190 (192)
62 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.4E-32 4.9E-37 225.4 15.1 156 198-377 5-161 (162)
63 2aja_A Ankyrin repeat family p 100.0 1.5E-35 5E-40 274.1 -3.9 261 122-406 90-369 (376)
64 1ihb_A P18-INK4C(INK6), cyclin 100.0 7.4E-32 2.5E-36 221.2 18.3 157 232-412 4-161 (162)
65 1awc_B Protein (GA binding pro 100.0 4.3E-32 1.5E-36 220.3 16.7 150 234-405 3-152 (153)
66 2y1l_E Darpin-8.4; hydrolase-i 100.0 2.1E-31 7.1E-36 220.1 20.4 160 194-376 10-169 (169)
67 3v31_A Ankyrin repeat family A 100.0 9.6E-32 3.3E-36 221.7 18.1 160 197-379 2-161 (167)
68 4hbd_A KN motif and ankyrin re 100.0 2.7E-32 9.2E-37 243.7 15.6 189 160-376 77-273 (276)
69 3v30_A DNA-binding protein rfx 100.0 4.3E-32 1.5E-36 224.9 15.6 156 233-409 2-158 (172)
70 3f6q_A Integrin-linked protein 100.0 1.6E-31 5.6E-36 222.9 17.6 168 197-386 4-171 (179)
71 3f6q_A Integrin-linked protein 100.0 1.4E-31 4.9E-36 223.3 14.8 163 231-416 3-166 (179)
72 3twr_A Tankyrase-2; ankyrin re 100.0 2.9E-31 9.8E-36 218.3 15.8 161 194-377 4-164 (165)
73 3twr_A Tankyrase-2; ankyrin re 100.0 1.7E-31 5.9E-36 219.7 13.6 158 229-408 4-162 (165)
74 1bd8_A P19INK4D CDK4/6 inhibit 100.0 5.5E-31 1.9E-35 214.5 15.9 152 199-374 3-154 (156)
75 1awc_B Protein (GA binding pro 100.0 2.4E-30 8.1E-35 210.0 19.2 150 199-372 3-152 (153)
76 1bd8_A P19INK4D CDK4/6 inhibit 100.0 2E-30 6.7E-35 211.2 18.8 153 233-408 2-155 (156)
77 1ycs_B 53BP2, P53BP2; ankyrin 100.0 1.3E-31 4.3E-36 234.3 7.6 187 196-408 3-201 (239)
78 2vge_A RELA-associated inhibit 100.0 1.5E-33 5.2E-38 244.3 -6.0 208 140-379 1-215 (229)
79 2aja_A Ankyrin repeat family p 100.0 6.7E-33 2.3E-37 256.3 -3.9 243 124-408 65-341 (376)
80 1ycs_B 53BP2, P53BP2; ankyrin 100.0 2.7E-30 9.2E-35 225.8 9.8 158 230-409 2-162 (239)
81 1bi7_B P16INK4A, MTS1, multipl 100.0 3E-29 1E-33 204.1 11.6 145 227-393 6-151 (156)
82 1d9s_A Cyclin-dependent kinase 100.0 9.9E-29 3.4E-33 196.2 13.4 133 224-378 3-136 (136)
83 3t8k_A Uncharacterized protein 100.0 1.4E-29 4.7E-34 211.6 7.5 165 199-383 7-184 (186)
84 3t8k_A Uncharacterized protein 100.0 1.7E-29 5.7E-34 211.1 7.0 159 233-408 6-176 (186)
85 1d9s_A Cyclin-dependent kinase 100.0 8.2E-29 2.8E-33 196.6 10.4 131 256-408 2-133 (136)
86 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.5E-26 5.2E-31 180.8 16.8 126 232-378 1-126 (126)
87 2jab_A H10-2-G3; HER2, darpin, 99.9 1.3E-26 4.3E-31 184.0 14.6 126 230-376 11-136 (136)
88 1bi7_B P16INK4A, MTS1, multipl 99.9 4.6E-27 1.6E-31 191.2 11.9 143 194-360 8-151 (156)
89 2jab_A H10-2-G3; HER2, darpin, 99.9 1.7E-26 5.9E-31 183.2 13.0 124 263-407 11-134 (136)
90 3c5r_A BARD-1, BRCA1-associate 99.9 4.9E-27 1.7E-31 186.6 9.8 132 256-409 1-132 (137)
91 1n0r_A 4ANK, 4 ankyrin repeats 99.9 2.9E-26 9.8E-31 179.2 14.0 123 265-408 1-123 (126)
92 2b0o_E UPLC1; arfgap, structur 99.9 2.4E-25 8.4E-30 200.5 14.6 141 232-399 150-299 (301)
93 3c5r_A BARD-1, BRCA1-associate 99.9 8.6E-26 2.9E-30 179.4 9.4 129 228-377 5-133 (137)
94 3aaa_C Myotrophin, protein V-1 99.9 4.2E-25 1.5E-29 171.9 10.8 116 264-400 5-120 (123)
95 3deo_A Signal recognition part 99.9 3E-25 1E-29 185.5 10.3 140 195-375 41-181 (183)
96 3deo_A Signal recognition part 99.9 1.3E-24 4.4E-29 181.6 14.0 137 231-406 42-179 (183)
97 3ui2_A Signal recognition part 99.9 6.7E-25 2.3E-29 192.0 12.3 142 196-378 43-185 (244)
98 3ui2_A Signal recognition part 99.9 4.2E-25 1.4E-29 193.3 10.6 140 230-408 42-182 (244)
99 3ehr_A Osteoclast-stimulating 99.9 3.7E-25 1.3E-29 191.0 8.8 136 230-386 70-206 (222)
100 3aaa_C Myotrophin, protein V-1 99.9 2.4E-24 8.3E-29 167.6 10.5 109 196-306 5-113 (123)
101 3ehr_A Osteoclast-stimulating 99.9 1.7E-24 5.8E-29 186.8 8.9 125 263-408 70-195 (222)
102 2b0o_E UPLC1; arfgap, structur 99.9 6.2E-24 2.1E-28 191.3 12.2 141 197-366 150-299 (301)
103 3lvq_E ARF-GAP with SH3 domain 99.9 4.4E-23 1.5E-27 199.2 17.3 126 235-381 134-268 (497)
104 3jue_A Arfgap with coiled-coil 99.9 3.8E-23 1.3E-27 190.3 14.0 150 228-398 194-349 (368)
105 1dcq_A PYK2-associated protein 99.9 9.7E-23 3.3E-27 181.4 15.3 211 175-411 42-263 (278)
106 1dcq_A PYK2-associated protein 99.9 3.1E-22 1.1E-26 178.1 15.4 126 233-379 130-264 (278)
107 1n0q_A 3ANK, 3 ankyrin repeats 99.9 5.4E-22 1.8E-26 146.0 12.7 92 266-378 2-93 (93)
108 3jue_A Arfgap with coiled-coil 99.9 4.4E-22 1.5E-26 183.2 12.8 126 263-409 196-324 (368)
109 2l6b_A NR1C; ankyrin, consensu 99.9 4.1E-22 1.4E-26 152.9 8.4 107 262-389 5-111 (115)
110 1n0q_A 3ANK, 3 ankyrin repeats 99.9 3.6E-21 1.2E-25 141.5 12.9 85 233-317 2-86 (93)
111 3lvq_E ARF-GAP with SH3 domain 99.9 4.8E-21 1.6E-25 185.0 16.6 132 160-295 133-269 (497)
112 2l6b_A NR1C; ankyrin, consensu 99.8 1.7E-21 6E-26 149.4 8.6 107 194-302 5-111 (115)
113 2zgd_A 3 repeat synthetic anky 99.8 1.3E-18 4.4E-23 132.0 10.6 92 227-318 18-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.8 3E-18 1E-22 130.0 11.0 90 262-372 20-109 (110)
115 1wic_A Hypothetical protein ri 99.5 3.2E-15 1.1E-19 117.9 5.4 113 2-121 16-134 (152)
116 2cri_A Vesicle-associated memb 99.5 9.5E-15 3.2E-19 115.0 8.1 117 1-121 11-129 (147)
117 1z9l_A Vesicle-associated memb 99.5 1.9E-14 6.6E-19 110.7 7.8 104 2-109 8-113 (128)
118 1msp_A MSP, major sperm protei 99.4 5.3E-13 1.8E-17 101.8 6.6 92 3-98 7-99 (126)
119 1row_A SSP-19, MSP-domain prot 99.3 1.5E-12 5.1E-17 95.8 5.4 94 5-110 3-97 (109)
120 1m1s_A WR4; structural genomic 99.2 8.3E-12 2.8E-16 92.1 5.8 95 3-109 9-104 (116)
121 3qbt_B Inositol polyphosphate 94.4 0.2 6.8E-06 38.4 8.2 66 5-71 27-99 (140)
122 2e6j_A Hydin protein; PAPD, st 92.8 0.38 1.3E-05 35.1 7.1 70 4-74 9-82 (112)
123 2ys4_A Hydrocephalus-inducing 90.5 0.81 2.8E-05 34.0 6.8 63 9-74 29-92 (122)
124 3qis_A Inositol polyphosphate 88.8 1.4 4.8E-05 39.9 8.2 68 5-73 30-104 (366)
125 3mkq_B Coatomer subunit alpha; 81.7 18 0.0006 28.6 10.9 131 125-288 9-140 (177)
126 4g26_A Pentatricopeptide repea 75.6 5.7 0.0002 37.6 7.0 104 174-286 90-198 (501)
127 2qsv_A Uncharacterized protein 57.7 41 0.0014 27.5 7.9 68 5-74 3-71 (220)
128 1gp8_A Protein (scaffolding pr 51.9 12 0.00039 20.9 2.3 19 127-145 16-34 (40)
129 2qsv_A Uncharacterized protein 50.8 68 0.0023 26.2 8.2 67 5-73 120-186 (220)
130 3gvo_A Pumilio 2, pumilio homo 24.6 49 0.0017 29.4 3.3 196 86-287 38-238 (351)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=4.6e-51 Score=390.41 Aligned_cols=312 Identities=25% Similarity=0.359 Sum_probs=240.1
Q ss_pred hHHHHHHhccCCccccccccccCCCCCccceeeeecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHH
Q 048601 86 DRFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRV 165 (418)
Q Consensus 86 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~ 165 (418)
...|..|+..|+.+.++.++....+ ++ ..+..|.||||+|+..|+.++|++|+++|++++ .....+.+++++
T Consensus 48 ~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~--~~~~~g~t~L~~ 119 (437)
T 1n11_A 48 ETPLHMAARAGHTEVAKYLLQNKAK-----VN-AKAKDDQTPLHCAARIGHTNMVKLLLENNANPN--LATTAGHTPLHI 119 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHTCC-----SS-CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT--CCCTTCCCHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCC-----CC-CCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCC--CCCCCCCcHHHH
Confidence 4556777777777777766654321 11 123456777777777777777777777766552 234556677777
Q ss_pred HHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCC
Q 048601 166 ATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTS 245 (418)
Q Consensus 166 a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~ 245 (418)
|+. .|+.+++++|++.+++.+. .+..|.||||+|+..|+.+++++|++.+. +++..+..|.||||+|+..|+
T Consensus 120 A~~--~g~~~~v~~Ll~~~~~~~~----~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~ 191 (437)
T 1n11_A 120 AAR--EGHVETVLALLEKEASQAC----MTKKGFTPLHVAAKYGKVRVAELLLERDA--HPNAAGKNGLTPLHVAVHHNN 191 (437)
T ss_dssp HHH--HTCHHHHHHHHHTTCCSCC----CCTTSCCHHHHHHHTTCHHHHHHHHHTTC--CTTCCCSSCCCHHHHHHHTTC
T ss_pred HHH--cCCHHHHHHHHhCCCCCcC----CCCCCCCHHHHHHHcCCHHHHHHHHhCCC--CCCCCCCCCCCHHHHHHHcCC
Confidence 777 6777777777777766655 66677777777777777777777776554 566777778888888888888
Q ss_pred HHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcC----
Q 048601 246 IGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRG---- 321 (418)
Q Consensus 246 ~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~---- 321 (418)
.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|.+.
T Consensus 192 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~ 271 (437)
T 1n11_A 192 LDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 271 (437)
T ss_dssp HHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred HHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC
Confidence 8888888888888877777888888888888888888888888888888888888888888888888888888643
Q ss_pred --------chHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHH
Q 048601 322 --------EAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLA 393 (418)
Q Consensus 322 --------~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A 393 (418)
++++.|+..|+.+++++|+++|++++.++..|+||||+|+.+|+.++|++|+++|++++.+|..|+||||+|
T Consensus 272 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A 351 (437)
T 1n11_A 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQA 351 (437)
T ss_dssp TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 368888888888888888888888888888889999999999999999999999999888888899999999
Q ss_pred HhcCCcceeehhhhccCCcccc
Q 048601 394 VEGGRVEPLLFIWLKQWGTMVS 415 (418)
Q Consensus 394 ~~~g~~~~v~~Ll~~~~g~~~~ 415 (418)
++.|+.++|++|+ +.|++++
T Consensus 352 ~~~g~~~iv~~Ll--~~ga~~~ 371 (437)
T 1n11_A 352 AQQGHTDIVTLLL--KNGASPN 371 (437)
T ss_dssp HHTTCHHHHHHHH--HTTCCSC
T ss_pred HHCChHHHHHHHH--HCcCCCC
Confidence 9999999999888 4566654
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=8.7e-51 Score=388.48 Aligned_cols=314 Identities=28% Similarity=0.378 Sum_probs=287.8
Q ss_pred chHHHHHHhccCCccccccccccCCCCCccceeeeecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHH
Q 048601 85 SDRFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYR 164 (418)
Q Consensus 85 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~ 164 (418)
..+.|..|+..|+.+.++.++....+ .+ ..+..|.||||+|+..|+.++|++|++++++++. ....+.++|+
T Consensus 14 g~t~L~~Aa~~g~~~~v~~Ll~~g~~-----~~-~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~ 85 (437)
T 1n11_A 14 GLTPLHVASFMGHLPIVKNLLQRGAS-----PN-VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA--KAKDDQTPLH 85 (437)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCC-----SC-CSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSC--CCTTSCCHHH
T ss_pred CCCHHHHHHHCCCHHHHHHHHHcCCC-----CC-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC--CCCCCCCHHH
Confidence 35679999999999999999876332 11 2345689999999999999999999999987633 4567899999
Q ss_pred HHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcC
Q 048601 165 VATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKT 244 (418)
Q Consensus 165 ~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~ 244 (418)
+|+. .|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++.+. ..+..+..|.||||+|+..|
T Consensus 86 ~A~~--~g~~~~v~~Ll~~ga~~~~----~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~--~~~~~~~~g~t~L~~A~~~g 157 (437)
T 1n11_A 86 CAAR--IGHTNMVKLLLENNANPNL----ATTAGHTPLHIAAREGHVETVLALLEKEA--SQACMTKKGFTPLHVAAKYG 157 (437)
T ss_dssp HHHH--HTCHHHHHHHHHHTCCTTC----CCTTCCCHHHHHHHHTCHHHHHHHHHTTC--CSCCCCTTSCCHHHHHHHTT
T ss_pred HHHH--CCCHHHHHHHHhCCCCCCC----CCCCCCcHHHHHHHcCCHHHHHHHHhCCC--CCcCCCCCCCCHHHHHHHcC
Confidence 9999 8999999999999999988 88999999999999999999999998765 56778889999999999999
Q ss_pred CHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcC---
Q 048601 245 SIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRG--- 321 (418)
Q Consensus 245 ~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~--- 321 (418)
+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|.+.
T Consensus 158 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 237 (437)
T 1n11_A 158 KVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS 237 (437)
T ss_dssp CHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999753
Q ss_pred ---------chHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHH
Q 048601 322 ---------EAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392 (418)
Q Consensus 322 ---------~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~ 392 (418)
++++.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+
T Consensus 238 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~ 317 (437)
T 1n11_A 238 ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHV 317 (437)
T ss_dssp TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHH
T ss_pred CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcceeehhhhccCCccccc
Q 048601 393 AVEGGRVEPLLFIWLKQWGTMVSH 416 (418)
Q Consensus 393 A~~~g~~~~v~~Ll~~~~g~~~~~ 416 (418)
|+..|+.++|++|+ +.|++++.
T Consensus 318 A~~~g~~~~v~~Ll--~~gad~n~ 339 (437)
T 1n11_A 318 ASHYGNIKLVKFLL--QHQADVNA 339 (437)
T ss_dssp HHHSSCSHHHHHHH--HTTCCTTC
T ss_pred HHHcCcHHHHHHHH--hcCCCCCC
Confidence 99999999999999 45666653
No 3
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.7e-47 Score=342.05 Aligned_cols=266 Identities=26% Similarity=0.289 Sum_probs=242.4
Q ss_pred ccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchH
Q 048601 122 FVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSE 201 (418)
Q Consensus 122 ~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~ 201 (418)
..|.|+|+.|+..|++++|++|++++++++.. ....+.++|++|+. .|+.+++++|+++|++++. .+..|.||
T Consensus 3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~----~~~~g~t~ 75 (285)
T 1wdy_A 3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQ-EEEGGWTPLHNAVQ--MSREDIVELLLRHGADPVL----RKKNGATP 75 (285)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTTCCCHHHHHHH--TTCHHHHHHHHHTTCCTTC----CCTTCCCH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCcccc-cCCCCCcHHHHHHH--cCCHHHHHHHHHcCCCCcc----cCCCCCCH
Confidence 35899999999999999999999999876432 35678899999999 8999999999999999887 88999999
Q ss_pred HHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC----------CCCCccHHH
Q 048601 202 LHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAK----------GKDGKTSLH 271 (418)
Q Consensus 202 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~----------~~~g~t~L~ 271 (418)
||+|+..|+.+++++|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++.. +..|.||||
T Consensus 76 L~~A~~~~~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~ 153 (285)
T 1wdy_A 76 FLLAAIAGSVKLLKLFLSKGA--DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM 153 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTTC--CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCC--CCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHH
Confidence 999999999999999998765 77889999999999999999999999999999999887 778999999
Q ss_pred HHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCC
Q 048601 272 NAAANGDRRMVEMLIEM-GADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCD 350 (418)
Q Consensus 272 ~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~ 350 (418)
+|+..|+.+++++|++. |++++..+..|.||||.|+..++.+.+ .+++++|+++|++++.++
T Consensus 154 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~-----------------~~i~~~Ll~~g~~~~~~~ 216 (285)
T 1wdy_A 154 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV-----------------EAITHLLLDHGADVNVRG 216 (285)
T ss_dssp HHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTH-----------------HHHHHHHHHTTCCSSCCC
T ss_pred HHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchH-----------------HHHHHHHHHcCCCCCCcC
Confidence 99999999999999998 999999999999999999988872211 345566999999999999
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccCCcccc
Q 048601 351 QYGLTPLHIAAIKGHKHVVLLLIE-FGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMVS 415 (418)
Q Consensus 351 ~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~g~~~~ 415 (418)
..|.||||+|+..|+.+++++|++ .|++++.+|..|+|||++|++.|+.+++++|+ +.|++++
T Consensus 217 ~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll--~~Ga~~~ 280 (285)
T 1wdy_A 217 ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC--KRGASTD 280 (285)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH--HHSSCSC
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHH--HcCCCCC
Confidence 999999999999999999999999 89999999999999999999999999999999 5566554
No 4
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=3.7e-46 Score=344.11 Aligned_cols=280 Identities=24% Similarity=0.273 Sum_probs=236.4
Q ss_pred ecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCc
Q 048601 120 IAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGW 199 (418)
Q Consensus 120 ~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 199 (418)
....|.|+|+.||++|++++|++|+++|++++.. +...+.||||+|+. .|+.++|++|+++|++++. .+..+.
T Consensus 21 ~~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~-~~~~g~TpLh~A~~--~g~~~iv~~Ll~~ga~~~~----~~~~~~ 93 (337)
T 4g8k_A 21 AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQ-EEEGGWTPLHNAVQ--MSREDIVELLLRHGADPVL----RKKNGA 93 (337)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTTCCCHHHHHHH--TTCHHHHHHHHHTTCCTTC----CCTTCC
T ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcc-CCCCCcCHHHHHHH--cCCHHHHHHHHHcCCchhh----hccCCC
Confidence 3455788999999999999999999988877432 33457889999988 8899999999999998887 888888
Q ss_pred hHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC----------CCCCccH
Q 048601 200 SELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAK----------GKDGKTS 269 (418)
Q Consensus 200 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~----------~~~g~t~ 269 (418)
++++.++..+...++..++.... +++..|..|.||||+|+..|+.+++++|+++|++++.. +..|.||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~ 171 (337)
T 4g8k_A 94 TPFILAAIAGSVKLLKLFLSKGA--DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA 171 (337)
T ss_dssp CHHHHHHHHTCHHHHHHHHTTTC--CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCH
T ss_pred chhHHHHhcccchhhHHhhhccc--hhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcH
Confidence 99999999999988888886554 67888888999999999999999999999998887653 3457899
Q ss_pred HHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCC----HHHHHHHhc------------CchHHHHHHcCC
Q 048601 270 LHNAAANGDRRMVEMLIE-MGADPTIKDDRGRSCFDVARDKGH----IEVLEVLQR------------GEAVLTAARRGE 332 (418)
Q Consensus 270 L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~----~~~~~~l~~------------~~~~~~a~~~g~ 332 (418)
||+|+..|+.++|++|++ .|++++.++..|.|+++.++..+. .+++++|++ .++++.|+..|+
T Consensus 172 L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~ 251 (337)
T 4g8k_A 172 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 251 (337)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhh
Confidence 999999999999999985 588999988899999888776543 356777754 346888999999
Q ss_pred HHHHHHHHhC-CCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccCC
Q 048601 333 LEGLESLLDK-GASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWG 411 (418)
Q Consensus 333 ~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~g 411 (418)
.+++++|++. |+++|.+|..|+||||+|+.+|+.++|++|+++|++++.+ +||++|+++|+.++|++|+ ++|
T Consensus 252 ~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll--~~G 324 (337)
T 4g8k_A 252 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG-----DLVMTARRNYDHSLVKVLL--SHG 324 (337)
T ss_dssp HHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHH--HTT
T ss_pred hHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHHH--HCc
Confidence 9999999985 8999999999999999999999999999999999999765 5999999999999999999 667
Q ss_pred cccc
Q 048601 412 TMVS 415 (418)
Q Consensus 412 ~~~~ 415 (418)
++++
T Consensus 325 A~~d 328 (337)
T 4g8k_A 325 AKED 328 (337)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 7765
No 5
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.6e-44 Score=324.80 Aligned_cols=260 Identities=22% Similarity=0.238 Sum_probs=206.3
Q ss_pred cccchHHHHHHHHCCCHHHHHHHHhcchhh---------hhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccc
Q 048601 121 AFVGPFLLRHAVSNGDFNAVKSILKRQKMI---------LAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDE 191 (418)
Q Consensus 121 ~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~---------~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~ 191 (418)
...|.|+||+|+..|+.+.++.++..++.. .....+..+.|+|++|+. .|+.+++++|++.|++++.
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~--~g~~~~v~~Ll~~g~~~~~-- 87 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAI--HGHQLSLRNLISQGWAVNI-- 87 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHH--TTCHHHHHHHHHTTCCSCE--
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHH--cCCHHHHHHHHHCCCCCCC--
Confidence 356899999999999988888766543220 012245678899999999 8999999999999999988
Q ss_pred cccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHH
Q 048601 192 RVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLH 271 (418)
Q Consensus 192 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~ 271 (418)
.+..|.||||+|+..|+.+++++|++.+. +++.++..|.||||+|+..|+.+++++|+++|++++..+ .|.||||
T Consensus 88 --~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~ 162 (285)
T 3d9h_A 88 --ITADHVSPLHEACLGGHLSCVKILLKHGA--QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIH 162 (285)
T ss_dssp --ECTTCCCHHHHHHHTTCHHHHHHHHHTTC--CSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHH
T ss_pred --cCCCCCCHHHHHHHCCcHHHHHHHHHCCC--CCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHH
Confidence 89999999999999999999999998754 788899999999999999999999999999999988654 5999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCC
Q 048601 272 NAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQ 351 (418)
Q Consensus 272 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~ 351 (418)
+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++ |+++|++++. +.
T Consensus 163 ~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~ga~~~~-~~ 220 (285)
T 3d9h_A 163 EAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKK---------------------LLESGADVNQ-GK 220 (285)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHH---------------------HHHTTCCTTC-CB
T ss_pred HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHH---------------------HHHCCCCCCC-CC
Confidence 9999999999999999999999999999999999998887776665 8899999995 88
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccCCccc
Q 048601 352 YGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMV 414 (418)
Q Consensus 352 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~g~~~ 414 (418)
.|.||||+|+..|+.+++++|+++|++++.+|..|+|||++|+ ++.+++++|++.. |+++
T Consensus 221 ~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~-~a~l 280 (285)
T 3d9h_A 221 GQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLERE-GASL 280 (285)
T ss_dssp TTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC-----
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhh-ccCC
Confidence 8999999999999999999999999999999999999999999 4578999999542 4443
No 6
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.4e-43 Score=316.17 Aligned_cols=263 Identities=26% Similarity=0.349 Sum_probs=238.1
Q ss_pred hHHHHHHhccCCccccccccccCCCCCccceeeeecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHH
Q 048601 86 DRFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRV 165 (418)
Q Consensus 86 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~ 165 (418)
...|..|+..|+.+.++.++....+ +....+..|.||||+|+..|+.+++++|+++|+++.. .+..+.+++++
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~ 78 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGAN-----VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL--RKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTCCCHHHH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCC-----cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcc--cCCCCCCHHHH
Confidence 5678999999999999999876442 2333456789999999999999999999999987633 45678999999
Q ss_pred HHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccC----------CCCCCc
Q 048601 166 ATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCR----------DKEGRT 235 (418)
Q Consensus 166 a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~----------~~~~~t 235 (418)
|+. .|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++.+. +++.. +..|.|
T Consensus 79 A~~--~~~~~~v~~Ll~~g~~~~~----~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~--~~~~~~~~~~~~~~~~~~g~t 150 (285)
T 1wdy_A 79 AAI--AGSVKLLKLFLSKGADVNE----CDFYGFTAFMEAAVYGKVKALKFLYKRGA--NVNLRRKTKEDQERLRKGGAT 150 (285)
T ss_dssp HHH--HTCHHHHHHHHHTTCCTTC----BCTTCCBHHHHHHHTTCHHHHHHHHHTTC--CTTCCCCCCHHHHHTTCCCCC
T ss_pred HHH--cCCHHHHHHHHHcCCCCCc----cCcccCCHHHHHHHhCCHHHHHHHHHhCC--CcccccccHHHHHhhccCCCc
Confidence 999 8999999999999999987 89999999999999999999999998766 44444 778999
Q ss_pred HHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCccHHHHHHHcCC----HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Q 048601 236 PLHLAVNKTSIGCAKVLLES-GADKEAKGKDGKTSLHNAAANGD----RRMVEMLIEMGADPTIKDDRGRSCFDVARDKG 310 (418)
Q Consensus 236 ~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 310 (418)
|||+|+..|+.+++++|++. |++++..+..|.||||+|+..++ .+++++|+++|++++.++..|.||||+|+..|
T Consensus 151 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 230 (285)
T 1wdy_A 151 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK 230 (285)
T ss_dssp HHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence 99999999999999999998 99999999999999999999999 99999999999999999999999999999888
Q ss_pred CHHHHHHHhcCchHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCC
Q 048601 311 HIEVLEVLQRGEAVLTAARRGELEGLESLLD-KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDN 384 (418)
Q Consensus 311 ~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~ 384 (418)
+.+++++ |++ .|++++.++..|.||||+|+..|+.+++++|+++|++++.+|.
T Consensus 231 ~~~~v~~---------------------Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d~ 284 (285)
T 1wdy_A 231 HLGLVQR---------------------LLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284 (285)
T ss_dssp CHHHHHH---------------------HHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred CHHHHHH---------------------HHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccc
Confidence 8777766 777 8999999999999999999999999999999999999998874
No 7
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.4e-45 Score=342.80 Aligned_cols=258 Identities=21% Similarity=0.258 Sum_probs=220.7
Q ss_pred ecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHH--------HcCCCCcccc
Q 048601 120 IAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLL--------RAGLSIEIDE 191 (418)
Q Consensus 120 ~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll--------~~g~~~~~~~ 191 (418)
.+..|.|+||.|+..|. +++++|+....+ ..+...+.|+||+|+. .|+.+++++|+ +.|++++.
T Consensus 90 ~~~~g~t~L~~Aa~~~~-~~~~~L~~~~~n---~~d~~~g~t~Lh~Aa~--~g~~~~v~~Ll~~~~~~ll~~ga~vn~-- 161 (373)
T 2fo1_E 90 PEPESPIKLHTEAAGSY-AITEPITRESVN---IIDPRHNRTVLHWIAS--NSSAEKSEDLIVHEAKECIAAGADVNA-- 161 (373)
T ss_dssp ----CCCHHHHHHHSSS-CCCSCCSTTTTT---TCCCSSCCCHHHHHHC--TTCCSCCTTHHHHHHHHHHHTCCCTTC--
T ss_pred CCCCCccHHHHHhcCCc-hHHHHhcccccc---ccCCcCCCCHHHHHHH--CCCHHHHHHHHHHHHHHHHhcCCCCcC--
Confidence 34568999999999554 778877653221 1223578899999998 88888877776 78998887
Q ss_pred cccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC---CCCCCCCCCCcc
Q 048601 192 RVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESG---ADKEAKGKDGKT 268 (418)
Q Consensus 192 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~g~t 268 (418)
.|..|.||||+|+..|+.+++++|++.+. +++..+..|.||||+|+..|+.+++++|++++ ++++..+..|.|
T Consensus 162 --~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t 237 (373)
T 2fo1_E 162 --MDCDENTPLMLAVLARRRRLVAYLMKAGA--DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMT 237 (373)
T ss_dssp --CCTTSCCHHHHHHHHTCHHHHHHHHHTTC--CSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCC
T ss_pred --CCCCCCCHHHHHHHcChHHHHHHHHHCCC--CCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCC
Confidence 88899999999999999999999998765 67888899999999999999999999999987 789999999999
Q ss_pred HHHHHHHcC---CHHHHHHHHHcCCCCCc--------cCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHH
Q 048601 269 SLHNAAANG---DRRMVEMLIEMGADPTI--------KDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLE 337 (418)
Q Consensus 269 ~L~~A~~~g---~~~~v~~Ll~~g~~~~~--------~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~ 337 (418)
|||+|+..| +.+++++|+++|++++. .+..|.||||+|+..|+.+++++
T Consensus 238 ~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~-------------------- 297 (373)
T 2fo1_E 238 ALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKY-------------------- 297 (373)
T ss_dssp HHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHH--------------------
T ss_pred HHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHH--------------------
Confidence 999999988 89999999999998875 56688999999888887777666
Q ss_pred HHHhCC-CCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccC
Q 048601 338 SLLDKG-ASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQW 410 (418)
Q Consensus 338 ~Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~ 410 (418)
|++++ ++++.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.|||++|+.+|+.++|++|++++.
T Consensus 298 -Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a 370 (373)
T 2fo1_E 298 -LVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP 370 (373)
T ss_dssp -HHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC-
T ss_pred -HHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence 67664 9999999999999999999999999999999999999999999999999999999999999995543
No 8
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=2.2e-42 Score=320.47 Aligned_cols=284 Identities=21% Similarity=0.223 Sum_probs=182.9
Q ss_pred HHHHHHhccCCccccccccccCCCCCccceeeeecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHH
Q 048601 87 RFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVA 166 (418)
Q Consensus 87 ~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a 166 (418)
..|..|+..|+.+.+.+++...+.. +. ..+..|.||||+|+..|+.++|++|+++|++++. .+..+.+||++|
T Consensus 26 ~~L~~A~~~g~~~~v~~ll~~~~~~----~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A 98 (351)
T 3utm_A 26 DELLEAARSGNEEKLMALLTPLNVN----CH-ASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA--KDKGGLVPLHNA 98 (351)
T ss_dssp HHHHHHHHHTCHHHHHHHCCTTTTT----CC-CSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTCCCHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHHhcCCC----cc-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc--cCCCCCcHHHHH
Confidence 4455666666666666555443221 11 1223455666666666666666666665554422 234555666666
Q ss_pred HHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHH------
Q 048601 167 TELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLA------ 240 (418)
Q Consensus 167 ~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A------ 240 (418)
+. .|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++.+. +++..+..|.+|+++|
T Consensus 99 ~~--~g~~~iv~~Ll~~g~~~~~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--~~~~~~~~g~~~l~~a~~~~~~ 170 (351)
T 3utm_A 99 CS--YGHYEVTELLLKHGACVNA----MDLWQFTPLHEAASKNRVEVCSLLLSHGA--DPTLVNCHGKSAVDMAPTPELR 170 (351)
T ss_dssp HH--TTCHHHHHHHHHTTCCTTC----CCTTCCCHHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHCSSHHHH
T ss_pred HH--CCCHHHHHHHHHCCCCCCC----CCCCCCCHHHHHHHcCCHHHHHHHHHcCC--CCccccCCCCcchHHHhhhhhH
Confidence 65 5666666666666665555 55556666666666666666666665443 4455555555554443
Q ss_pred ---------------HHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHc---CCHHHHHHHHHcCCCCCccCCCCCCH
Q 048601 241 ---------------VNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAAN---GDRRMVEMLIEMGADPTIKDDRGRSC 302 (418)
Q Consensus 241 ---------------~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~ 302 (418)
+..+..+.++.++..+......+..|.||||+|+.. +..+++++|++.|++++.++..|.||
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 250 (351)
T 3utm_A 171 ERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTP 250 (351)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred HHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCH
Confidence 334444444444444443334455666677777666 44666777777777776666667777
Q ss_pred HHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcC
Q 048601 303 FDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQ 382 (418)
Q Consensus 303 l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~ 382 (418)
||+|+..|+.+ ++++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|++++.+
T Consensus 251 L~~A~~~g~~~---------------------~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~ 309 (351)
T 3utm_A 251 LHVAAERAHND---------------------VMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSII 309 (351)
T ss_dssp HHHHHHTTCHH---------------------HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred HHHHHHcCCHH---------------------HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCc
Confidence 66666655555 455589999999999999999999999999999999999999999999
Q ss_pred CCCCCcHhHHHHhcCCcceeehhhhccC
Q 048601 383 DNEGHAPLHLAVEGGRVEPLLFIWLKQW 410 (418)
Q Consensus 383 d~~g~t~l~~A~~~g~~~~v~~Ll~~~~ 410 (418)
|..|+||+++| +.+++++|.+...
T Consensus 310 ~~~g~tal~~a----~~~~~~~l~~~~~ 333 (351)
T 3utm_A 310 SLQGFTAAQMG----NEAVQQILSESTP 333 (351)
T ss_dssp CTTSCCHHHHS----CHHHHHHHHHC--
T ss_pred CCCCCChhhhh----hHHHHHHHHhccc
Confidence 99999999998 5678888875543
No 9
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=4.2e-43 Score=310.16 Aligned_cols=240 Identities=27% Similarity=0.331 Sum_probs=181.6
Q ss_pred cccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCch
Q 048601 121 AFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWS 200 (418)
Q Consensus 121 ~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t 200 (418)
+..|.||||+|+..|+.-.+ + ..+.. .++.+++++|++.|++++. ..+..|.|
T Consensus 7 d~~g~tpL~~A~~~g~~~~~------~----------------~~~~~--~~~~~~v~~Ll~~g~~~~~---~~d~~g~t 59 (253)
T 1yyh_A 7 GPDGFTPLMIASCSGGGLET------G----------------NSEEE--EDAPAVISDFIYQGASLHN---QTDRTGET 59 (253)
T ss_dssp ------------------------------------------------------------------------CCCTTSCC
T ss_pred CCCCCcHHHHHHhccccccc------c----------------chhhc--CCChHHHHHHHHccCCccc---ccCCCCCc
Confidence 45799999999998853110 0 01223 6799999999999998754 14788999
Q ss_pred HHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCccHHHHHHHcCCH
Q 048601 201 ELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGA-DKEAKGKDGKTSLHNAAANGDR 279 (418)
Q Consensus 201 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~~~g~~ 279 (418)
|||+|+..|+.+++++|++.+. +++.++..|.||||+|+..|+.+++++|++++. +++..+..|.||||+|+..|+.
T Consensus 60 ~L~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~ 137 (253)
T 1yyh_A 60 ALHLAARYSRSDAAKRLLEASA--DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE 137 (253)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCS
T ss_pred HHHHHHHcCCHHHHHHHHHcCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChH
Confidence 9999999999999999998765 778899999999999999999999999999987 8999999999999999999999
Q ss_pred HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHH
Q 048601 280 RMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHI 359 (418)
Q Consensus 280 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~ 359 (418)
+++++|+++|++++.++..|.||||+|+..|+.+++++ |+++|++++.++..|.||||+
T Consensus 138 ~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~ga~~~~~~~~g~tpL~~ 196 (253)
T 1yyh_A 138 GMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV---------------------LLKNGANKDMQNNREETPLFL 196 (253)
T ss_dssp SHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHH---------------------HHHTTCCTTCCCTTSCCHHHH
T ss_pred HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHH---------------------HHHcCCCCCCcCCCCCCHHHH
Confidence 99999999999999999999999999988877776655 899999999999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccC
Q 048601 360 AAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQW 410 (418)
Q Consensus 360 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~ 410 (418)
|+..|+.+++++|+++|++++.+|..|+||+++|+++|+.+++++|...++
T Consensus 197 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~ 247 (253)
T 1yyh_A 197 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHH 247 (253)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC---
T ss_pred HHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999985544
No 10
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.9e-43 Score=313.87 Aligned_cols=249 Identities=20% Similarity=0.202 Sum_probs=221.4
Q ss_pred cchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHH
Q 048601 123 VGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSEL 202 (418)
Q Consensus 123 ~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L 202 (418)
.|.||||+|+..|+.++|++|+++|.+++ ..+..+.|+||+|+. .|+.+++++|+++|++++. .+..|.|||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~----~~~~g~t~L 73 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVN--IITADHVSPLHEACL--GGHLSCVKILLKHGAQVNG----VTADWHTPL 73 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSS--CCCTTCCCHHHHHHH--HTCHHHHHHHHHTTCCTTC----CCTTSCCHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHHHHHH--cCCHHHHHHHHHCCCCCCC----CCCCCCCHH
Confidence 58999999999999999999999987763 356688999999999 8999999999999999988 899999999
Q ss_pred HHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHH
Q 048601 203 HVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMV 282 (418)
Q Consensus 203 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v 282 (418)
|+|+..|+.+++++|++.+. +++. +..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++
T Consensus 74 ~~A~~~~~~~~v~~Ll~~g~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v 150 (261)
T 2xai_A 74 FNACVSGSWDCVNLLLQHGA--SVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACV 150 (261)
T ss_dssp HHHHHHTCHHHHHHHHHTTC--CSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCC--CCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHH
Confidence 99999999999999998776 3443 45699999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHH
Q 048601 283 EMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAI 362 (418)
Q Consensus 283 ~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~ 362 (418)
++|+++|++++. +..|.||||+|+..|+.+++++ |+++|++++.+|..|+||||+|+.
T Consensus 151 ~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~---------------------Ll~~gad~~~~d~~g~tpl~~A~~ 208 (261)
T 2xai_A 151 KKLLESGADVNQ-GKGQDSPLHAVARTASEELACL---------------------LMDFGADTQAKNAEGKRPVELVPP 208 (261)
T ss_dssp HHHHHHTCCTTC-CBTTBCHHHHHHHHTCHHHHHH---------------------HHHTTCCTTCCCTTSCCGGGGSCT
T ss_pred HHHHHcCCCCCC-CCCCCChHHHHHHcCCHHHHHH---------------------HHHcCCCCCCcCCCCCChhhhccc
Confidence 999999999995 8889999999988887776655 899999999999999999999996
Q ss_pred cCCHHHHHHHHHcCCC--------CCcCCCCCCcHhHHHHhcCCcceeehhh
Q 048601 363 KGHKHVVLLLIEFGAD--------VECQDNEGHAPLHLAVEGGRVEPLLFIW 406 (418)
Q Consensus 363 ~g~~~~v~~Ll~~ga~--------~~~~d~~g~t~l~~A~~~g~~~~v~~Ll 406 (418)
++ +++++|++++.. ++.+|..|.||++.|.+....+.++-++
T Consensus 209 ~~--~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~~p~~l~~~l 258 (261)
T 2xai_A 209 ES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLKQFL 258 (261)
T ss_dssp TC--THHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSSSCHHHHHHH
T ss_pred cc--cHHHHHHhccCCccHHHHHHHHHHHHhchhccccCcccCCcHHHHHHH
Confidence 55 589999999765 4468999999999999988877776554
No 11
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=4.2e-44 Score=333.90 Aligned_cols=258 Identities=16% Similarity=0.148 Sum_probs=229.6
Q ss_pred ecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCc
Q 048601 120 IAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGW 199 (418)
Q Consensus 120 ~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 199 (418)
.+..|.||||+|+..|+.++|++|+++|++++ ..+..+.++|++|+. .|+.+++++|+++|++++ +..|.
T Consensus 16 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~--~~d~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~------~~~g~ 85 (364)
T 3ljn_A 16 SDDENMEKIHVAARKGQTDEVRRLIETGVSPT--IQNRFGCTALHLACK--FGCVDTAKYLASVGEVHS------LWHGQ 85 (364)
T ss_dssp CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTCCCHHHHHHH--HCCHHHHHHHHHHCCCCC------CBTTB
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCcHHHHHHH--cCCHHHHHHHHHCCCCcc------ccCCC
Confidence 45679999999999999999999999998763 356688999999999 899999999999999553 35789
Q ss_pred hHHHHHHHcCCHHHHHHHHhccc--CCCCcc-----------------CCCCCCcHHHHHHHcC--CHHHHHHHHHcCCC
Q 048601 200 SELHVAAAFGRTEEISSLVRMKE--YESLDC-----------------RDKEGRTPLHLAVNKT--SIGCAKVLLESGAD 258 (418)
Q Consensus 200 t~L~~A~~~g~~~~v~~Ll~~~~--~~~~~~-----------------~~~~~~t~L~~A~~~~--~~~~v~~Ll~~~~~ 258 (418)
||||+|+..|+.+++++|++... +..++. .+..|.||||+|+..| +.+++++|+++|++
T Consensus 86 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~ 165 (364)
T 3ljn_A 86 KPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS 165 (364)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC
T ss_pred CHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC
Confidence 99999999999999999998721 113333 7788999999999999 99999999999999
Q ss_pred CCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC-----CCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCH
Q 048601 259 KEAKGKDGKTSLHNAAANGDRRMVEMLIEMGAD-----PTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGEL 333 (418)
Q Consensus 259 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~ 333 (418)
++..+..|.||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++
T Consensus 166 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~---------------- 229 (364)
T 3ljn_A 166 PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMR---------------- 229 (364)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHH----------------
T ss_pred CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHH----------------
Confidence 999999999999999999999999999999999 99999999999999998887776665
Q ss_pred HHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc------------CCCCCCcHhHHHHhcCCcce
Q 048601 334 EGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVEC------------QDNEGHAPLHLAVEGGRVEP 401 (418)
Q Consensus 334 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~------------~d~~g~t~l~~A~~~g~~~~ 401 (418)
|+++|++++.+|..|.||||+|+..|+.++|++|+++|++++. .+..+++|++.|+..|+.+.
T Consensus 230 -----Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~ 304 (364)
T 3ljn_A 230 -----FVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQE 304 (364)
T ss_dssp -----HHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHH
T ss_pred -----HHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHH
Confidence 8999999999999999999999999999999999999877532 46678999999999998888
Q ss_pred eehhhhc
Q 048601 402 LLFIWLK 408 (418)
Q Consensus 402 v~~Ll~~ 408 (418)
+..|++.
T Consensus 305 v~~ll~~ 311 (364)
T 3ljn_A 305 VLQLLQE 311 (364)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777744
No 12
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.2e-41 Score=313.97 Aligned_cols=280 Identities=24% Similarity=0.288 Sum_probs=243.2
Q ss_pred chHHHHHHhccCCccccccccccCCCCCccceeeeecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHH
Q 048601 85 SDRFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYR 164 (418)
Q Consensus 85 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~ 164 (418)
.+..|+.|+..|+.+.|+.|++.-. +++......|.||||+|+..|+.++|++|+++|+++.. ....+.++++
T Consensus 25 ~~t~L~~Av~~g~~~~V~~LL~~Ga-----dvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~--~~~~~~~~~~ 97 (337)
T 4g8k_A 25 DNHLLIKAVQNEDVDLVQQLLEGGA-----NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL--RKKNGATPFI 97 (337)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTC-----CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTCCCHHH
T ss_pred CChHHHHHHHcCCHHHHHHHHHCCC-----CCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhh--hccCCCchhH
Confidence 3677999999999999999987532 23334455699999999999999999999999988743 4567788888
Q ss_pred HHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCC--------CccCCCCCCcH
Q 048601 165 VATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYES--------LDCRDKEGRTP 236 (418)
Q Consensus 165 ~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~--------~~~~~~~~~t~ 236 (418)
.+.. .+..+++..+++.+++++. .+..|.||||+|+..|+.+++++|++.+...+ ....+..|.||
T Consensus 98 ~~~~--~~~~~~~~~~~~~~~~~~~----~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~ 171 (337)
T 4g8k_A 98 LAAI--AGSVKLLKLFLSKGADVNE----CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA 171 (337)
T ss_dssp HHHH--HTCHHHHHHHHTTTCCTTC----BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCH
T ss_pred HHHh--cccchhhHHhhhccchhhh----hccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcH
Confidence 8888 7999999999999999988 99999999999999999999999998765322 12345678999
Q ss_pred HHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCccHHHHHHHcCC----HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Q 048601 237 LHLAVNKTSIGCAKVLLE-SGADKEAKGKDGKTSLHNAAANGD----RRMVEMLIEMGADPTIKDDRGRSCFDVARDKGH 311 (418)
Q Consensus 237 L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 311 (418)
||+|+..|+.+++++|++ .|++++.++..|.|+|++++..++ .+++++|+++|++++.++..|+||||+|+..|+
T Consensus 172 L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~ 251 (337)
T 4g8k_A 172 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 251 (337)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhh
Confidence 999999999999999996 599999999999999998876543 468999999999999999999999999999999
Q ss_pred HHHHHHHhc-------------CchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 048601 312 IEVLEVLQR-------------GEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGAD 378 (418)
Q Consensus 312 ~~~~~~l~~-------------~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 378 (418)
.+++++|.. .++++.|++.|+.+++++|+++|+++|. .+|||+|+.+|+.++|++|+++||+
T Consensus 252 ~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~-----~~~L~~A~~~~~~~iv~~Ll~~GA~ 326 (337)
T 4g8k_A 252 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC-----GDLVMTARRNYDHSLVKVLLSHGAK 326 (337)
T ss_dssp HHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTT-----CCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred hHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-----CCHHHHHHHcCCHHHHHHHHHCcCC
Confidence 999999964 2479999999999999999999999985 4699999999999999999999999
Q ss_pred CCcC
Q 048601 379 VECQ 382 (418)
Q Consensus 379 ~~~~ 382 (418)
+|..
T Consensus 327 ~d~~ 330 (337)
T 4g8k_A 327 EDFH 330 (337)
T ss_dssp C---
T ss_pred CCCC
Confidence 9864
No 13
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=9.2e-42 Score=316.27 Aligned_cols=264 Identities=25% Similarity=0.303 Sum_probs=224.0
Q ss_pred ccchHHHHHHHHCCCHHHHHHHHhc-chhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCch
Q 048601 122 FVGPFLLRHAVSNGDFNAVKSILKR-QKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWS 200 (418)
Q Consensus 122 ~~g~~~L~~A~~~g~~~~vk~Ll~~-~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t 200 (418)
..+.++|+.|+..|+.+.|++|+.. +.++ ...+..+.|+||+|+. .|+.+++++|+++|++++. .+..|.|
T Consensus 22 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~--~~~d~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~----~~~~g~t 93 (351)
T 3utm_A 22 EYKKDELLEAARSGNEEKLMALLTPLNVNC--HASDGRKSTPLHLAAG--YNRVRIVQLLLQHGADVHA----KDKGGLV 93 (351)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHCCTTTTTC--CCSSTTCCCHHHHHHH--TTCHHHHHHHHHTTCCTTC----CCTTCCC
T ss_pred cccchhHHHHHHcCCHHHHHHHHHhcCCCc--ccCCCCCCCHHHHHHH--cCCHHHHHHHHHcCCCCCc----cCCCCCc
Confidence 4578899999999999999999875 3332 3345678899999999 8999999999999999887 8889999
Q ss_pred HHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHH-------
Q 048601 201 ELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNA------- 273 (418)
Q Consensus 201 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A------- 273 (418)
|||+|+..|+.+++++|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||+++|
T Consensus 94 ~L~~A~~~g~~~iv~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~ 171 (351)
T 3utm_A 94 PLHNACSYGHYEVTELLLKHGA--CVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRE 171 (351)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHCCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHH
Confidence 9999999999999999998765 7788899999999999999999999999999999999999999987765
Q ss_pred --------------HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHH
Q 048601 274 --------------AANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESL 339 (418)
Q Consensus 274 --------------~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~L 339 (418)
+..++.+.++.++..+......+..|.||||.|+..++. +..+++++|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~------------------~~~~~~~~L 233 (351)
T 3utm_A 172 RLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHP------------------KRKQVAELL 233 (351)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCST------------------THHHHHHHH
T ss_pred HHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCc------------------cHHHHHHHH
Confidence 445566666666665544445566677777777766432 234567779
Q ss_pred HhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccCCcccc
Q 048601 340 LDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMVS 415 (418)
Q Consensus 340 l~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~g~~~~ 415 (418)
+++|++++.++..|+||||+|+.+|+.++|++|+++|++++.+|..|+||||+|++.|+.++|++|+ +.|++++
T Consensus 234 l~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll--~~gad~~ 307 (351)
T 3utm_A 234 LRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLL--SYGSDPS 307 (351)
T ss_dssp HHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH--HTTCCTT
T ss_pred HHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH--HcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 5566655
No 14
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=6.7e-42 Score=299.46 Aligned_cols=224 Identities=28% Similarity=0.394 Sum_probs=202.7
Q ss_pred CChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCC
Q 048601 154 LSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEG 233 (418)
Q Consensus 154 ~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~ 233 (418)
..+..+.+++++|+. .|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++.+. +++..+..|
T Consensus 6 ~~~~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--~~~~~~~~g 77 (237)
T 3b7b_A 6 MEHQNKRSPLHAAAE--AGHVDICHMLVQAGANIDT----CSEDQRTPLMEAAENNHLEAVKYLIKAGA--LVDPKDAEG 77 (237)
T ss_dssp CSSCCSCCHHHHHHH--HTCHHHHHHHHHTTCCTTC----CCTTCCCHHHHHHHTTCHHHHHHHHTTTC--CCCCCCTTS
T ss_pred cccCCCCCHHHHHHH--cCcHHHHHHHHHcCCCcCc----cCCCCCCHHHHHHHhCCHHHHHHHHhCCC--CCCCCCCCC
Confidence 345667888888888 7888888888888888877 88889999999999999999999997665 677889999
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Q 048601 234 RTPLHLAVNKTSIGCAKVLLESG-ADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHI 312 (418)
Q Consensus 234 ~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 312 (418)
.||||+|+..|+.+++++|+++| .+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus 78 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 157 (237)
T 3b7b_A 78 STCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCV 157 (237)
T ss_dssp CCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCH
T ss_pred CcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCH
Confidence 99999999999999999999998 89999999999999999999999999999999999999999999999998887776
Q ss_pred HHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHH
Q 048601 313 EVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392 (418)
Q Consensus 313 ~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~ 392 (418)
+++++ |+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+|||++
T Consensus 158 ~~~~~---------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~ 216 (237)
T 3b7b_A 158 DIAEI---------------------LLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQC 216 (237)
T ss_dssp HHHHH---------------------HHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHH
T ss_pred HHHHH---------------------HHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHH
Confidence 66555 889999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcceeehhh
Q 048601 393 AVEGGRVEPLLFIW 406 (418)
Q Consensus 393 A~~~g~~~~v~~Ll 406 (418)
|+.+|+.+.+..|+
T Consensus 217 A~~~~~~~~~~~l~ 230 (237)
T 3b7b_A 217 ASLNSQVWSALQMS 230 (237)
T ss_dssp SCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999987666554
No 15
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=6.6e-42 Score=303.86 Aligned_cols=220 Identities=24% Similarity=0.296 Sum_probs=201.8
Q ss_pred hhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHH
Q 048601 158 EAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPL 237 (418)
Q Consensus 158 ~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L 237 (418)
.+.|++++|+. .|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|++.+. +++..+..|.|||
T Consensus 2 ~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~----~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L 73 (261)
T 2xai_A 2 SDWSPMHEAAI--HGHQLSLRNLISQGWAVNI----ITADHVSPLHEACLGGHLSCVKILLKHGA--QVNGVTADWHTPL 73 (261)
T ss_dssp --CCHHHHHHH--HTCHHHHHHHHHTTCCSSC----CCTTCCCHHHHHHHHTCHHHHHHHHHTTC--CTTCCCTTSCCHH
T ss_pred CCCCHHHHHHH--cCCHHHHHHHHHCCCCCCC----cCCCCCCHHHHHHHcCCHHHHHHHHHCCC--CCCCCCCCCCCHH
Confidence 46799999999 8999999999999999988 89999999999999999999999998764 7888999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHH
Q 048601 238 HLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEV 317 (418)
Q Consensus 238 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ 317 (418)
|+|+..|+.+++++|+++|++++. +..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++
T Consensus 74 ~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 152 (261)
T 2xai_A 74 FNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKK 152 (261)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHH
Confidence 999999999999999999999985 4569999999999999999999999999999999999999999998887776665
Q ss_pred HhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcC
Q 048601 318 LQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGG 397 (418)
Q Consensus 318 l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g 397 (418)
|+++|++++. +..|.||||+|+..|+.+++++|+++|+|++.+|..|+||+++|+.++
T Consensus 153 ---------------------Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~ 210 (261)
T 2xai_A 153 ---------------------LLESGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES 210 (261)
T ss_dssp ---------------------HHHHTCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTC
T ss_pred ---------------------HHHcCCCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhccccc
Confidence 8899999995 788999999999999999999999999999999999999999999765
Q ss_pred CcceeehhhhccC
Q 048601 398 RVEPLLFIWLKQW 410 (418)
Q Consensus 398 ~~~~v~~Ll~~~~ 410 (418)
+++++|++...
T Consensus 211 --~~~~~ll~~~~ 221 (261)
T 2xai_A 211 --PLAQLFLEREG 221 (261)
T ss_dssp --THHHHHHHC-C
T ss_pred --cHHHHHHhccC
Confidence 48888886543
No 16
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=5.7e-42 Score=300.66 Aligned_cols=221 Identities=28% Similarity=0.334 Sum_probs=188.2
Q ss_pred hhhhHHHHHHHhhCCHHHHHHHHH----cCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCC
Q 048601 159 AESLYRVATELAANSEDMVSLLLR----AGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGR 234 (418)
Q Consensus 159 ~~~~l~~a~~~~~~~~~~v~~Ll~----~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~ 234 (418)
+.++||+|+. .|+.+++++|++ .|.+++. .+..|.||||+|+..|+.+++++|++.+. +++..+..|.
T Consensus 9 g~t~L~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--~~~~~~~~g~ 80 (241)
T 1k1a_A 9 GDTPLHIAVV--QGNLPAVHRLVNLFQQGGRELDI----YNNLRQTPLHLAVITTLPSVVRLLVTAGA--SPMALDRHGQ 80 (241)
T ss_dssp TCCHHHHHHH--TTCHHHHHHHHHHHHHTTCCSCC----CCTTSCCHHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTSC
T ss_pred CCcHHHHHHH--cCCHHHHHHHHHHHHhcCCCCCc----ccccCCCHHHHHHHcCCHHHHHHHHHcCC--CccccCCCCC
Confidence 3344444444 344444444433 6777776 88889999999999999999999998665 6778889999
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCC----CCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCCCHHHHHHHc
Q 048601 235 TPLHLAVNKTSIGCAKVLLESGA----DKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKD-DRGRSCFDVARDK 309 (418)
Q Consensus 235 t~L~~A~~~~~~~~v~~Ll~~~~----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A~~~ 309 (418)
||||+|+..|+.+++++|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..
T Consensus 81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~ 160 (241)
T 1k1a_A 81 TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVEN 160 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHT
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHc
Confidence 99999999999999999999987 888889999999999999999999999999999999888 7899999999888
Q ss_pred CCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcH
Q 048601 310 GHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAP 389 (418)
Q Consensus 310 ~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~ 389 (418)
|+.+++++ |+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||
T Consensus 161 ~~~~~v~~---------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tp 219 (241)
T 1k1a_A 161 NSLSMVQL---------------------LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTP 219 (241)
T ss_dssp TCHHHHHH---------------------HHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCT
T ss_pred CCHHHHHH---------------------HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCH
Confidence 77776665 889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhcCCcceeehhhhc
Q 048601 390 LHLAVEGGRVEPLLFIWLK 408 (418)
Q Consensus 390 l~~A~~~g~~~~v~~Ll~~ 408 (418)
|++|++.|+.++++.|+..
T Consensus 220 l~~A~~~~~~~i~~~l~~~ 238 (241)
T 1k1a_A 220 LMVARSRRVIDILRGKATR 238 (241)
T ss_dssp TTTCSSHHHHHHHTC----
T ss_pred HHHHHhcCcHHHHhhhccC
Confidence 9999999999999999854
No 17
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=9.4e-42 Score=301.50 Aligned_cols=219 Identities=25% Similarity=0.298 Sum_probs=181.5
Q ss_pred HHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcC
Q 048601 130 HAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFG 209 (418)
Q Consensus 130 ~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g 209 (418)
.+...++.+++++|+++++++... .+..+.|+|++|+. .|+.+++++|+++|++++. .+..|.||||+|+..|
T Consensus 29 ~~~~~~~~~~v~~Ll~~g~~~~~~-~d~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~----~~~~g~t~L~~A~~~~ 101 (253)
T 1yyh_A 29 SEEEEDAPAVISDFIYQGASLHNQ-TDRTGETALHLAAR--YSRSDAAKRLLEASADANI----QDNMGRTPLHAAVSAD 101 (253)
T ss_dssp -----------------------C-CCTTSCCHHHHHHH--TTCHHHHHHHHHTTCCTTC----CCTTSCCHHHHHHHHT
T ss_pred hhhcCCChHHHHHHHHccCCcccc-cCCCCCcHHHHHHH--cCCHHHHHHHHHcCCCCCC----CCCCCCCHHHHHHHcC
Confidence 377899999999999999887443 35678999999999 8999999999999999988 8999999999999999
Q ss_pred CHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcC
Q 048601 210 RTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMG 289 (418)
Q Consensus 210 ~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 289 (418)
+.+++++|++.+. .+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|
T Consensus 102 ~~~~v~~Ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g 180 (253)
T 1yyh_A 102 AQGVFQILIRNRA-TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 180 (253)
T ss_dssp CHHHHHHHHHSTT-SCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT
T ss_pred CHHHHHHHHHcCC-CCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 9999999998664 467888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHH
Q 048601 290 ADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVV 369 (418)
Q Consensus 290 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v 369 (418)
++++.++..|.||||+|+..|+.+++++ |+++|++++.+|..|.|||++|+.+|+.+++
T Consensus 181 a~~~~~~~~g~tpL~~A~~~~~~~~v~~---------------------Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~ 239 (253)
T 1yyh_A 181 ANKDMQNNREETPLFLAAREGSYETAKV---------------------LLDHFANRDITDHMDRLPRDIAQERMHHDIV 239 (253)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHH---------------------HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred CCCCCcCCCCCCHHHHHHHCCCHHHHHH---------------------HHHcCCCccccccCCCCHHHHHHHcCCHHHH
Confidence 9999999999999999998887776665 8999999999999999999999999999999
Q ss_pred HHHHHcCC
Q 048601 370 LLLIEFGA 377 (418)
Q Consensus 370 ~~Ll~~ga 377 (418)
++|.+...
T Consensus 240 ~~l~~~~~ 247 (253)
T 1yyh_A 240 RLLDLEHH 247 (253)
T ss_dssp HHHHC---
T ss_pred HHHHHHhh
Confidence 99987654
No 18
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=4.3e-42 Score=320.32 Aligned_cols=223 Identities=30% Similarity=0.405 Sum_probs=208.3
Q ss_pred ChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCC
Q 048601 155 SSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGR 234 (418)
Q Consensus 155 ~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~ 234 (418)
.+..+.++|++|+. .|+.++|++|++.|++++. .+..|.||||+|+..|+.+++++|++.+. +..+..|.
T Consensus 16 ~d~~g~t~L~~Aa~--~g~~~~v~~Ll~~g~~~~~----~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~~~~~~g~ 85 (364)
T 3ljn_A 16 SDDENMEKIHVAAR--KGQTDEVRRLIETGVSPTI----QNRFGCTALHLACKFGCVDTAKYLASVGE----VHSLWHGQ 85 (364)
T ss_dssp CCHHHHHHHHHHHH--HTCHHHHHHHHHTTCCTTC----CCTTCCCHHHHHHHHCCHHHHHHHHHHCC----CCCCBTTB
T ss_pred cCCCCCCHHHHHHH--cCCHHHHHHHHHcCCCccc----cCCCCCcHHHHHHHcCCHHHHHHHHHCCC----CccccCCC
Confidence 45789999999999 8999999999999999988 89999999999999999999999998776 33446899
Q ss_pred cHHHHHHHcCCHHHHHHHHHc----CCCCCC-----------------CCCCCccHHHHHHHcC--CHHHHHHHHHcCCC
Q 048601 235 TPLHLAVNKTSIGCAKVLLES----GADKEA-----------------KGKDGKTSLHNAAANG--DRRMVEMLIEMGAD 291 (418)
Q Consensus 235 t~L~~A~~~~~~~~v~~Ll~~----~~~~~~-----------------~~~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~ 291 (418)
||||+|+..|+.+++++|++. |++++. .+..|.||||+|+..| +.+++++|+++|++
T Consensus 86 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~ 165 (364)
T 3ljn_A 86 KPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS 165 (364)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC
T ss_pred CHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC
Confidence 999999999999999999998 887776 7889999999999999 99999999999999
Q ss_pred CCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCC-----CCcCCCCCCcHHHHHHHcCCH
Q 048601 292 PTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAS-----TNYCDQYGLTPLHIAAIKGHK 366 (418)
Q Consensus 292 ~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~g~~ 366 (418)
++..+..|.||||+|+..|+.+++++ |+++|++ ++..+..|+||||+|+..|+.
T Consensus 166 ~~~~d~~g~t~L~~A~~~g~~~~v~~---------------------Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~ 224 (364)
T 3ljn_A 166 PTAKDKADETPLMRAMEFRNREALDL---------------------MMDTVPSKSSLRLDYANKQGNSHLHWAILINWE 224 (364)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHH---------------------HHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCH
T ss_pred CcccCCCCCCHHHHHHHcCCHHHHHH---------------------HHhcccccccccccccCCCCCcHHHHHHHcCCH
Confidence 99999999999999998887776665 8888888 999999999999999999999
Q ss_pred HHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhc
Q 048601 367 HVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLK 408 (418)
Q Consensus 367 ~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~ 408 (418)
++|++|+++|++++.+|..|+|||++|++.|+.++|++|++.
T Consensus 225 ~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 225 DVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHc
Confidence 999999999999999999999999999999999999999965
No 19
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.2e-41 Score=296.60 Aligned_cols=192 Identities=30% Similarity=0.403 Sum_probs=159.2
Q ss_pred cCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHH
Q 048601 194 KTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNA 273 (418)
Q Consensus 194 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A 273 (418)
.+..|.||||+|+..|+.+++++|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus 36 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 113 (231)
T 3aji_A 36 TDQDSRTALHWACSAGHTEIVEFLLQLGV--PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYA 113 (231)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTC--CSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCCCCCCHHHHHHHcCcHHHHHHHHHhCC--CCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 56778888888888888888888887654 6677788888888888888888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCC
Q 048601 274 AANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYG 353 (418)
Q Consensus 274 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g 353 (418)
+..|+.+++++|+++|++++.++..|.||||.|+..|+.+++++ |+++|++++.++..|
T Consensus 114 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~g~~~~~~~~~g 172 (231)
T 3aji_A 114 ASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI---------------------LLFYKASTNIQDTEG 172 (231)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH---------------------HHHTTCCSCCCCTTS
T ss_pred HHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHH---------------------HHhcCCCccccCCCC
Confidence 88888888888888888888888888888888877766665554 778888888888888
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhc
Q 048601 354 LTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLK 408 (418)
Q Consensus 354 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~ 408 (418)
.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+++++.+++++|...
T Consensus 173 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~ 227 (231)
T 3aji_A 173 NTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGE 227 (231)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHccc
Confidence 8888888888888888888888888888888888888888888888888888743
No 20
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=9.7e-42 Score=306.39 Aligned_cols=253 Identities=21% Similarity=0.216 Sum_probs=190.9
Q ss_pred ecccchHHHHHHHHCCCHHHHHHHHhcchhhh-hcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCC
Q 048601 120 IAFVGPFLLRHAVSNGDFNAVKSILKRQKMIL-AGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDG 198 (418)
Q Consensus 120 ~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~ 198 (418)
.+..|.||||+|+..|+.++|++|+++++... .......+.||||+|+. .|+.+++++|+++|++++. .+..|
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~--~g~~~~v~~Ll~~ga~~~~----~~~~g 78 (282)
T 1oy3_D 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAI--LGEASTVEKLYAAGAGVLV----AERGG 78 (282)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHH--HTCHHHHHHHHHTTCCSSC----CCTTS
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHH--cCCHHHHHHHHHcCCCCCC----CCCCC
Confidence 34579999999999999999999999887632 23455688999999999 8999999999999999988 89999
Q ss_pred chHHHHHHHcCCHHHHHHHHhcccCCCC-----------ccCCCCCCcHHHHHHHcCC-HHHHHHHHHcCCCCCCCCCCC
Q 048601 199 WSELHVAAAFGRTEEISSLVRMKEYESL-----------DCRDKEGRTPLHLAVNKTS-IGCAKVLLESGADKEAKGKDG 266 (418)
Q Consensus 199 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-----------~~~~~~~~t~L~~A~~~~~-~~~v~~Ll~~~~~~~~~~~~g 266 (418)
.||||+|+..|+.+++++|++.+..... ......+.++++.++..+. ......+...+++++..+..|
T Consensus 79 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 158 (282)
T 1oy3_D 79 HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG 158 (282)
T ss_dssp CCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTS
T ss_pred CCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCC
Confidence 9999999999999999999987653211 1122345666776665544 344455556788899999999
Q ss_pred ccHHHHHHHcCCHHHHHHHHHcCCCCCccCCC-CCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCC
Q 048601 267 KTSLHNAAANGDRRMVEMLIEMGADPTIKDDR-GRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAS 345 (418)
Q Consensus 267 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~ 345 (418)
.||||+|+..|+.+++++|+++|++++..+.. |+||||+|+..|+.+++++ |+++|++
T Consensus 159 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~---------------------Ll~~gad 217 (282)
T 1oy3_D 159 HTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL---------------------LLKAGAD 217 (282)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHH---------------------HHHTTCC
T ss_pred cCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHH---------------------HHHcCCC
Confidence 99999999999999999999999999998854 9999999998887776665 8999999
Q ss_pred CCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCc
Q 048601 346 TNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRV 399 (418)
Q Consensus 346 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~ 399 (418)
++.++..|+||||+|+.+|+.+++++|+++|++++.+|..|.||+++|......
T Consensus 218 ~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~~ 271 (282)
T 1oy3_D 218 PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDS 271 (282)
T ss_dssp TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC----------------
T ss_pred CcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCcccc
Confidence 999999999999999999999999999999999999999999999999876543
No 21
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.7e-41 Score=305.04 Aligned_cols=262 Identities=20% Similarity=0.199 Sum_probs=204.2
Q ss_pred chHHHHHHhccCCccccccccccCCCCCc-----cceeeeecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhh
Q 048601 85 SDRFLIKATVFGSADSVNSLCVTLPDGST-----QDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEA 159 (418)
Q Consensus 85 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~ 159 (418)
....+..|+..|+.+.+.+++...+.... ..-....+..|.||||+|+..|+.++|++|++++.+++. .+..+
T Consensus 15 ~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~--~~~~g 92 (285)
T 3d9h_A 15 VPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNI--ITADH 92 (285)
T ss_dssp ---------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCE--ECTTC
T ss_pred HHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCC--cCCCC
Confidence 47789999999998888886544332110 111234567799999999999999999999999877633 45678
Q ss_pred hhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHH
Q 048601 160 ESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHL 239 (418)
Q Consensus 160 ~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~ 239 (418)
.|+|++|+. .|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++.+. +++. +..|.||||+
T Consensus 93 ~t~L~~A~~--~g~~~~v~~Ll~~ga~~~~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--~~~~-~~~g~t~L~~ 163 (285)
T 3d9h_A 93 VSPLHEACL--GGHLSCVKILLKHGAQVNG----VTADWHTPLFNACVSGSWDCVNLLLQHGA--SVQP-ESDLASPIHE 163 (285)
T ss_dssp CCHHHHHHH--TTCHHHHHHHHHTTCCSSC----CCTTCCCHHHHHHHHTCHHHHHHHHHTTC--CSSC-SCTTSCHHHH
T ss_pred CCHHHHHHH--CCcHHHHHHHHHCCCCCCC----CCCCCCCHHHHHHHcCHHHHHHHHHHCCC--CCCC-CCCCCCHHHH
Confidence 999999999 8999999999999999988 89999999999999999999999998765 4443 3459999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHh
Q 048601 240 AVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQ 319 (418)
Q Consensus 240 A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~ 319 (418)
|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++. +..|.||||+|+..|+.+++++
T Consensus 164 A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~-- 240 (285)
T 3d9h_A 164 AARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACL-- 240 (285)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHH--
T ss_pred HHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHH--
Confidence 9999999999999999999999999999999999999999999999999999995 8899999999998887776665
Q ss_pred cCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCc
Q 048601 320 RGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEF-GADVEC 381 (418)
Q Consensus 320 ~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~ 381 (418)
|+++|++++.+|..|+||||+|+ ++.+++++|+++ |+++..
T Consensus 241 -------------------Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~~ 282 (285)
T 3d9h_A 241 -------------------LMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLEREGASLPK 282 (285)
T ss_dssp -------------------HHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC------
T ss_pred -------------------HHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCCC
Confidence 89999999999999999999999 567999999998 777653
No 22
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=5.1e-41 Score=292.67 Aligned_cols=227 Identities=27% Similarity=0.398 Sum_probs=210.7
Q ss_pred cchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHH
Q 048601 123 VGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSEL 202 (418)
Q Consensus 123 ~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L 202 (418)
.+.++|+.|+..|+++.+++|++.++.... ..+..+.+++++|+. .|+.+++++|++.|++++. .+..|.|||
T Consensus 5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~-~~~~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~----~~~~g~t~L 77 (231)
T 3aji_A 5 VSNIMICNLAYSGKLDELKERILADKSLAT-RTDQDSRTALHWACS--AGHTEIVEFLLQLGVPVND----KDDAGWSPL 77 (231)
T ss_dssp CSSSHHHHHHHHTCHHHHHHHHHHCGGGGG-CCCTTSCCHHHHHHH--HTCHHHHHHHHHTTCCSCC----CCTTSCCHH
T ss_pred cccchHHHHHHhCCHHHHHHHHHhchhhhh-cCCCCCCCHHHHHHH--cCcHHHHHHHHHhCCCCCC----cCCCCCCHH
Confidence 467899999999999999999998766533 345688999999999 8999999999999999887 899999999
Q ss_pred HHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHH
Q 048601 203 HVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMV 282 (418)
Q Consensus 203 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v 282 (418)
|+|+..|+.+++++|++.+. +++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++
T Consensus 78 ~~A~~~~~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v 155 (231)
T 3aji_A 78 HIAASAGXDEIVKALLVKGA--HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMV 155 (231)
T ss_dssp HHHHHHTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred HHHHHcCHHHHHHHHHHcCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHH
Confidence 99999999999999998765 7788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHH
Q 048601 283 EMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAI 362 (418)
Q Consensus 283 ~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~ 362 (418)
++|+++|++++.++..|.||||+|+..|+.+++++ |+++|++++.++..|.|||++|+.
T Consensus 156 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~ga~~~~~~~~g~t~l~~A~~ 214 (231)
T 3aji_A 156 HILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF---------------------LVTQGASIYIENKEEKTPLQVAKG 214 (231)
T ss_dssp HHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH---------------------HHHTTCCSCCCCTTSCCHHHHSCH
T ss_pred HHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHH---------------------HHHCCCCCCCCCCCCCCHHHHHHh
Confidence 99999999999999999999999998887776665 899999999999999999999999
Q ss_pred cCCHHHHHHHHHcCCCC
Q 048601 363 KGHKHVVLLLIEFGADV 379 (418)
Q Consensus 363 ~g~~~~v~~Ll~~ga~~ 379 (418)
.++.+++++|.++|+++
T Consensus 215 ~~~~~i~~lL~~~~a~i 231 (231)
T 3aji_A 215 GLGLILKRLAEGEEASM 231 (231)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHccccccC
Confidence 99999999999998764
No 23
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=7.4e-41 Score=291.03 Aligned_cols=190 Identities=30% Similarity=0.415 Sum_probs=166.2
Q ss_pred cCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCcc-CCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCccHH
Q 048601 194 KTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDC-RDKEGRTPLHLAVNKTSIGCAKVLLESG--ADKEAKGKDGKTSL 270 (418)
Q Consensus 194 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~t~L~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~g~t~L 270 (418)
.+..|.||||+|+..|+.+++++|++.+...+++. .+..|.||||+|+..|+.+++++|+++| ++++..+..|.|||
T Consensus 32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L 111 (228)
T 2dzn_A 32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCL 111 (228)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHH
Confidence 56778888888888888888888888775455555 7888999999999999999999999988 88888889999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCC-CCCCcC
Q 048601 271 HNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKG-ASTNYC 349 (418)
Q Consensus 271 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g-~~~~~~ 349 (418)
|+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++ |+++| ++++.+
T Consensus 112 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~g~~~~~~~ 170 (228)
T 2dzn_A 112 HLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL---------------------LCGLGKSAVNWQ 170 (228)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH---------------------HHTTTCCCSCCC
T ss_pred HHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHH---------------------HHhcCcccccCc
Confidence 99999999999999999999999999999999999888877776655 78888 899999
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhh
Q 048601 350 DQYGLTPLHIAAIKGHKHVVLLLI-EFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWL 407 (418)
Q Consensus 350 ~~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~ 407 (418)
|..|+||||+|+..|+.+++++|+ ++|++++.+|..|+||+++|++. +++++|++
T Consensus 171 d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~ 226 (228)
T 2dzn_A 171 DKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN 226 (228)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence 999999999999999999999999 88999999999999999999764 56677764
No 24
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-41 Score=301.62 Aligned_cols=224 Identities=25% Similarity=0.347 Sum_probs=134.9
Q ss_pred eecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCC
Q 048601 119 KIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDG 198 (418)
Q Consensus 119 ~~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~ 198 (418)
+.+..+.++|+.||..|++++|++|++.++....... ..++. .+..+
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~-----------------------------~~~~~----~~~~~ 52 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAE-----------------------------DTVSA----ADPEF 52 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC---------------------------------------------------
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCccccccc-----------------------------ccccc----cCccC
Confidence 4566788999999999999999999988765321100 00111 44556
Q ss_pred chHHHHHHHcCCHH-HHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcC
Q 048601 199 WSELHVAAAFGRTE-EISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANG 277 (418)
Q Consensus 199 ~t~L~~A~~~g~~~-~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g 277 (418)
.|||+.|+..++.+ ++++|++.+. +++.+|.+|.||||+|+..|+.+++++|++.|++++..+..|.||+++|+..+
T Consensus 53 ~t~L~~a~~~~~~~~~v~~Ll~~Ga--dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~ 130 (269)
T 4b93_B 53 CHPLCQCPKCAPAQKRLAKVPASGL--GVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQG 130 (269)
T ss_dssp ----------------------CCC--CTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred CCHHHHHHHhCCHHHHHHHHHHCCC--CCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccC
Confidence 67777776665543 5566665443 56666777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHH
Q 048601 278 DRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPL 357 (418)
Q Consensus 278 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L 357 (418)
+.+++++|+++|++++.+|..|+||||+|+..|+.+++++ |+++|+++|.++..|+|||
T Consensus 131 ~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~---------------------Ll~~gadvn~~~~~g~t~L 189 (269)
T 4b93_B 131 HFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVAL---------------------LLQHGASINASNNKGNTAL 189 (269)
T ss_dssp CHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHH---------------------HHHTTCCTTCBCTTSCBHH
T ss_pred hHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH---------------------HHHCCCCCCccccCCCcHH
Confidence 7777777777777777777777777776666555554443 6667777777777777777
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCC
Q 048601 358 HIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGR 398 (418)
Q Consensus 358 ~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~ 398 (418)
|+|+.+|+.++|++|+++|+|++.+|..|+|||++|+++|+
T Consensus 190 h~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 190 HEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc
Confidence 77777777777777777777777777777777777766664
No 25
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=5.3e-41 Score=290.94 Aligned_cols=215 Identities=27% Similarity=0.376 Sum_probs=186.5
Q ss_pred CCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHH
Q 048601 172 NSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKV 251 (418)
Q Consensus 172 ~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~ 251 (418)
|+.+++++|++.|++++. ..+..|.||||+|+..|+.+++++|++.+. +++..+..|.||||+|+..|+.+++++
T Consensus 2 g~~~~i~~Ll~~g~~~~~---~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~ 76 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHN---QTDRTGETALHLAARYSRSDAAKRLLEASA--DANIQDNMGRTPLHAAVSADAQGVFQI 76 (223)
T ss_dssp ---CCEETTEETTCCTTC---CCTTTCCCHHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred CcHHHHHHHHHcCCCccc---ccCCCCCchHHHHHHcCCHHHHHHHHHcCC--CCCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 678888899999988765 137789999999999999999999997754 677888899999999999999999999
Q ss_pred HHHcCC-CCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHc
Q 048601 252 LLESGA-DKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARR 330 (418)
Q Consensus 252 Ll~~~~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~ 330 (418)
|++++. +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++
T Consensus 77 Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~------------- 143 (223)
T 2f8y_A 77 LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV------------- 143 (223)
T ss_dssp HHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHH-------------
T ss_pred HHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHH-------------
Confidence 999887 888888999999999999999999999999999999999999999999888777666655
Q ss_pred CCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccC
Q 048601 331 GELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQW 410 (418)
Q Consensus 331 g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~ 410 (418)
|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|++.|+.+++++|+ ++
T Consensus 144 --------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~--~~ 213 (223)
T 2f8y_A 144 --------LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD--EY 213 (223)
T ss_dssp --------HHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH--HT
T ss_pred --------HHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHH--Hc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999 45
Q ss_pred Cccc
Q 048601 411 GTMV 414 (418)
Q Consensus 411 g~~~ 414 (418)
|+..
T Consensus 214 g~~~ 217 (223)
T 2f8y_A 214 NLVR 217 (223)
T ss_dssp TCSS
T ss_pred CCCc
Confidence 5443
No 26
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=5.4e-41 Score=313.40 Aligned_cols=258 Identities=21% Similarity=0.254 Sum_probs=221.7
Q ss_pred chHHHHHHhccCCccccccccccCCCCCccceeeeecccchHHHHHHHHCCCHHHHHHHH--------hcchhhhhcCCh
Q 048601 85 SDRFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSIL--------KRQKMILAGLSS 156 (418)
Q Consensus 85 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~vk~Ll--------~~~~~~~~~~~~ 156 (418)
....|..|+..+ .+.+..++.. +++......|.||||+|+..|+.+++++|+ +.|++++ ..+
T Consensus 94 g~t~L~~Aa~~~-~~~~~~L~~~-------~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn--~~d 163 (373)
T 2fo1_E 94 SPIKLHTEAAGS-YAITEPITRE-------SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN--AMD 163 (373)
T ss_dssp CCCHHHHHHHSS-SCCCSCCSTT-------TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTT--CCC
T ss_pred CccHHHHHhcCC-chHHHHhccc-------cccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCc--CCC
Confidence 456688888744 4555555432 223344457999999999999999888887 6677663 345
Q ss_pred hhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhccc-CCCCccCCCCCCc
Q 048601 157 AEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKE-YESLDCRDKEGRT 235 (418)
Q Consensus 157 ~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~~t 235 (418)
..+.|+|++|+. .|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++.+. ..+++..+..|.|
T Consensus 164 ~~g~TpL~~A~~--~g~~~iv~~Ll~~ga~~~~----~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t 237 (373)
T 2fo1_E 164 CDENTPLMLAVL--ARRRRLVAYLMKAGADPTI----YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMT 237 (373)
T ss_dssp TTSCCHHHHHHH--HTCHHHHHHHHHTTCCSCC----CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCC
T ss_pred CCCCCHHHHHHH--cChHHHHHHHHHCCCCCcc----cCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCC
Confidence 688999999999 8999999999999999988 89999999999999999999999998652 1367888999999
Q ss_pred HHHHHHHcC---CHHHHHHHHHcCCCCCC--------CCCCCccHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHH
Q 048601 236 PLHLAVNKT---SIGCAKVLLESGADKEA--------KGKDGKTSLHNAAANGDRRMVEMLIEMG-ADPTIKDDRGRSCF 303 (418)
Q Consensus 236 ~L~~A~~~~---~~~~v~~Ll~~~~~~~~--------~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~l 303 (418)
|||+|+..+ +.+++++|+++|++++. .+..|.||||+|+..|+.++|++|+++| ++++.+|..|.|||
T Consensus 238 ~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL 317 (373)
T 2fo1_E 238 ALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPI 317 (373)
T ss_dssp HHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHH
T ss_pred HHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHH
Confidence 999999998 89999999999999886 5678999999999999999999999886 99999999999999
Q ss_pred HHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 048601 304 DVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADV 379 (418)
Q Consensus 304 ~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~ 379 (418)
|+|+..|+.+++++ |+++|++++.+|..|.||||+|+.+|+.++|++|+++|++.
T Consensus 318 ~~A~~~g~~~iv~~---------------------Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~ 372 (373)
T 2fo1_E 318 MLAAQEGRIEVVMY---------------------LIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372 (373)
T ss_dssp HHHHHHTCHHHHHH---------------------HHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred HHHHHcCCHHHHHH---------------------HHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence 99988887776665 89999999999999999999999999999999999999864
No 27
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=6.2e-41 Score=294.05 Aligned_cols=229 Identities=24% Similarity=0.316 Sum_probs=203.3
Q ss_pred ecccchHHHHHHHHCCCHHHHHHHHh----cchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccC
Q 048601 120 IAFVGPFLLRHAVSNGDFNAVKSILK----RQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKT 195 (418)
Q Consensus 120 ~~~~g~~~L~~A~~~g~~~~vk~Ll~----~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~ 195 (418)
.+..|.||||+|+..|+.++|++|++ .+.++ ...+..+.+++++|+. .|+.+++++|++.|++++. .+
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~--~~~~~~g~t~L~~A~~--~~~~~~v~~Ll~~g~~~~~----~~ 76 (241)
T 1k1a_A 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL--DIYNNLRQTPLHLAVI--TTLPSVVRLLVTAGASPMA----LD 76 (241)
T ss_dssp --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS--CCCCTTSCCHHHHHHH--TTCHHHHHHHHHTTCCTTC----CC
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CcccccCCCHHHHHHH--cCCHHHHHHHHHcCCCccc----cC
Confidence 45679999999999999999999997 44443 3345678999999999 8999999999999999987 89
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhcccC--CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCccHHHH
Q 048601 196 KDGWSELHVAAAFGRTEEISSLVRMKEY--ESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKG-KDGKTSLHN 272 (418)
Q Consensus 196 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~ 272 (418)
..|.||||+|+..|+.+++++|++.+.. .+++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+
T Consensus 77 ~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~ 156 (241)
T 1k1a_A 77 RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIH 156 (241)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHH
Confidence 9999999999999999999999987652 2567788999999999999999999999999999999998 889999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCC
Q 048601 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQY 352 (418)
Q Consensus 273 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~ 352 (418)
|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++ |+++|++++.+|..
T Consensus 157 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~ga~~~~~~~~ 215 (241)
T 1k1a_A 157 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRT---------------------LVRSGADSSLKNCH 215 (241)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHH---------------------HHHTTCCTTCCCTT
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHH---------------------HHhcCCCCCCcCCC
Confidence 999999999999999999999999999999999988877776665 89999999999999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCC
Q 048601 353 GLTPLHIAAIKGHKHVVLLLIEFGA 377 (418)
Q Consensus 353 g~t~L~~A~~~g~~~~v~~Ll~~ga 377 (418)
|.||||+|+..|+.++++.|.++++
T Consensus 216 g~tpl~~A~~~~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 216 NDTPLMVARSRRVIDILRGKATRPA 240 (241)
T ss_dssp SCCTTTTCSSHHHHHHHTC------
T ss_pred CCCHHHHHHhcCcHHHHhhhccCCC
Confidence 9999999999999999999998875
No 28
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-41 Score=301.38 Aligned_cols=232 Identities=23% Similarity=0.326 Sum_probs=170.0
Q ss_pred hHHHHHHhccCCccccccccccCCCCCccceeeeecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHH
Q 048601 86 DRFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRV 165 (418)
Q Consensus 86 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~ 165 (418)
...|+.|+..|+.+.|+.++......... ....+ ......+.++++.
T Consensus 12 ~~~L~~A~~~G~~~~v~~LL~~~~~~~~~-------------------------~~~~~--------~~~~~~~~t~L~~ 58 (269)
T 4b93_B 12 VEKLLRAVADGDLEMVRYLLEWTEEDLED-------------------------AEDTV--------SAADPEFCHPLCQ 58 (269)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTCC---------------------------------------------------------
T ss_pred hhHHHHHHHcCCHHHHHHHHHCCCccccc-------------------------ccccc--------cccCccCCCHHHH
Confidence 46799999999999999998664421000 00000 1122345566776
Q ss_pred HHHHhhCC-HHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcC
Q 048601 166 ATELAANS-EDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKT 244 (418)
Q Consensus 166 a~~~~~~~-~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~ 244 (418)
|+. .+. .+++++|++.|++++. .+.+|.||||+|+..|+.+++++|++.+. +++..+..|.||+++|+..+
T Consensus 59 a~~--~~~~~~~v~~Ll~~Gadvn~----~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a--~~~~~~~~g~t~l~~a~~~~ 130 (269)
T 4b93_B 59 CPK--CAPAQKRLAKVPASGLGVNV----TSQDGSSPLHVAALHGRADLIPLLLKHGA--NAGARNADQAVPLHLACQQG 130 (269)
T ss_dssp ------------------CCCCTTC----CCTTSCCHHHHHHHTTCTTHHHHHHHTTC--CTTCCCTTCCCHHHHHHHHT
T ss_pred HHH--hCCHHHHHHHHHHCCCCCCC----cCCCCCCHHHHHHHcCcHHHHHHHHhcCC--CcCccCCCCCCccccccccC
Confidence 665 333 4578899999999988 89999999999999999999999998765 77888999999999999999
Q ss_pred CHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchH
Q 048601 245 SIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAV 324 (418)
Q Consensus 245 ~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~ 324 (418)
+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++
T Consensus 131 ~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~------- 203 (269)
T 4b93_B 131 HFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVEL------- 203 (269)
T ss_dssp CHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHH-------
T ss_pred hHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999999999999999999998887776665
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCC-HHHHHHHHHcCCCC
Q 048601 325 LTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGH-KHVVLLLIEFGADV 379 (418)
Q Consensus 325 ~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~-~~~v~~Ll~~ga~~ 379 (418)
|+++|++++.+|..|+||||+|+++|+ .+++++|.+.++.+
T Consensus 204 --------------Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~~ 245 (269)
T 4b93_B 204 --------------LLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVASL 245 (269)
T ss_dssp --------------HHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC--------
T ss_pred --------------HHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchhh
Confidence 899999999999999999999998886 45566666666554
No 29
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=5.4e-40 Score=287.33 Aligned_cols=224 Identities=22% Similarity=0.321 Sum_probs=206.1
Q ss_pred cccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCch
Q 048601 121 AFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWS 200 (418)
Q Consensus 121 ~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t 200 (418)
+..|.||||+|+..|+.+++++|+++|.++.. ....+.+++++|+. .|+.+++++|+++|++++. .+..|.|
T Consensus 8 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~--~~~~~~v~~Ll~~g~~~~~----~~~~g~t 79 (237)
T 3b7b_A 8 HQNKRSPLHAAAEAGHVDICHMLVQAGANIDT--CSEDQRTPLMEAAE--NNHLEAVKYLIKAGALVDP----KDAEGST 79 (237)
T ss_dssp SCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTCCCHHHHHHH--TTCHHHHHHHHTTTCCCCC----CCTTSCC
T ss_pred cCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCc--cCCCCCCHHHHHHH--hCCHHHHHHHHhCCCCCCC----CCCCCCc
Confidence 45689999999999999999999999887633 45678999999999 8999999999999999887 8899999
Q ss_pred HHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHH
Q 048601 201 ELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRR 280 (418)
Q Consensus 201 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~ 280 (418)
|||+|+..|+.+++++|++.+. .+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+
T Consensus 80 ~L~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 158 (237)
T 3b7b_A 80 CLHLAAKKGHYEVVQYLLSNGQ-MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVD 158 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTC-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHH
T ss_pred HHHHHHHcCCHHHHHHHHhCCC-CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHH
Confidence 9999999999999999998763 467888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHH
Q 048601 281 MVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIA 360 (418)
Q Consensus 281 ~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A 360 (418)
++++|+++|++++.++..|.||||+|+..|+.+++++ |+++|++++.+|..|.||||+|
T Consensus 159 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~gad~~~~d~~g~t~l~~A 217 (237)
T 3b7b_A 159 IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVL---------------------FLSRDSDVTLKNKEGETPLQCA 217 (237)
T ss_dssp HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH---------------------HHTTTCCTTCCCTTSCCHHHHS
T ss_pred HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHH---------------------HHHcCCCCCccCCCCCCHHHHH
Confidence 9999999999999999999999999998887776665 8999999999999999999999
Q ss_pred HHcCCHHHHHHHHH
Q 048601 361 AIKGHKHVVLLLIE 374 (418)
Q Consensus 361 ~~~g~~~~v~~Ll~ 374 (418)
+.+|+...+..|++
T Consensus 218 ~~~~~~~~~~~l~~ 231 (237)
T 3b7b_A 218 SLNSQVWSALQMSK 231 (237)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999876666654
No 30
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=9.1e-40 Score=286.25 Aligned_cols=229 Identities=25% Similarity=0.268 Sum_probs=200.0
Q ss_pred hhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCc
Q 048601 156 SAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRT 235 (418)
Q Consensus 156 ~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t 235 (418)
+..+.++++.|+. .|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|++.+.. .....+..|.|
T Consensus 6 d~~~~~~l~~A~~--~g~~~~~~~Ll~~g~~~~~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~~~~t 78 (240)
T 3eu9_A 6 DDYSTWDIVKATQ--YGIYERCRELVEAGYDVRQ----PDKENVTLLHWAAINNRIDLVKYYISKGAI-VDQLGGDLNST 78 (240)
T ss_dssp SCGGGCCHHHHHH--TTCHHHHHHHHHTTCCTTC----CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBTTTTBC
T ss_pred ccccchHHHHHHH--cCChHHHHHHHHcCCCcCC----CCCCCCCHHHHHHHhCCHHHHHHHHHcCCc-chhhcCCcCCC
Confidence 3456778888888 7888888888888888877 888899999999999999999999987652 22344556899
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHH
Q 048601 236 PLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVL 315 (418)
Q Consensus 236 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~ 315 (418)
|||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||.|+..++
T Consensus 79 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~---- 154 (240)
T 3eu9_A 79 PLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH---- 154 (240)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCC----
T ss_pred hhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986554
Q ss_pred HHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHH
Q 048601 316 EVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQ-YGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAV 394 (418)
Q Consensus 316 ~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~ 394 (418)
..+++++|++.|++++..+. .|.||||+|+.+|+.+++++|+++|++++.+|..|+|||++|+
T Consensus 155 ----------------~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 218 (240)
T 3eu9_A 155 ----------------SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAK 218 (240)
T ss_dssp ----------------SSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHH
T ss_pred ----------------hHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence 13445558999999999887 8999999999999999999999999999999999999999999
Q ss_pred hcCCcceeehhhhccCC
Q 048601 395 EGGRVEPLLFIWLKQWG 411 (418)
Q Consensus 395 ~~g~~~~v~~Ll~~~~g 411 (418)
+.|+.+++++|++....
T Consensus 219 ~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 219 QRKNVWMINHLQEARQA 235 (240)
T ss_dssp HTTCHHHHHHHHHHC--
T ss_pred HcCcHHHHHHHHHhhhc
Confidence 99999999999965543
No 31
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=5.5e-40 Score=297.62 Aligned_cols=250 Identities=24% Similarity=0.292 Sum_probs=196.1
Q ss_pred HHHHCCCHHHHHHHHhcchhhhhc-------CChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHH
Q 048601 130 HAVSNGDFNAVKSILKRQKMILAG-------LSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSEL 202 (418)
Q Consensus 130 ~A~~~g~~~~vk~Ll~~~~~~~~~-------~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L 202 (418)
.++..|+.+.++.++.....+... .....+.++++.|+. .|+.+++++|++.|++++. .+..|.|||
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~--~g~~~~v~~Ll~~g~~~~~----~~~~g~t~L 77 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACS--SGDTEEVLRLLERGADINY----ANVDGLTAL 77 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHH--HTCHHHHHHHHHHCCCTTC----BCTTCCBHH
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHH--cCCHHHHHHHHHcCCCCcc----cCCCCCCHH
Confidence 366677777777777654432211 112356788888888 7888888888888888877 788888888
Q ss_pred HHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHH
Q 048601 203 HVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMV 282 (418)
Q Consensus 203 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v 282 (418)
|+|+..|+.+++++|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++
T Consensus 78 ~~A~~~g~~~~v~~Ll~~ga--~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~ 155 (299)
T 1s70_B 78 HQACIDDNVDMVKFLVENGA--NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELL 155 (299)
T ss_dssp HHHHHTTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCC--CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHH
Confidence 88888888888888887654 6777888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHc-CCCCC--------------------------ccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHH
Q 048601 283 EMLIEM-GADPT--------------------------IKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEG 335 (418)
Q Consensus 283 ~~Ll~~-g~~~~--------------------------~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~ 335 (418)
++++.. |.+++ ..+..|.||||+|+..|+.++
T Consensus 156 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~--------------------- 214 (299)
T 1s70_B 156 QNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEV--------------------- 214 (299)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHH---------------------
T ss_pred HHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHH---------------------
Confidence 877643 33332 244567777777766665555
Q ss_pred HHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhcc
Q 048601 336 LESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQ 409 (418)
Q Consensus 336 ~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~ 409 (418)
+++|+++|++++.+|..|.||||+|+.+|+.++|++|+++|++++.+|..|.|||++|++. ..+.++.|+..+
T Consensus 215 v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~-~~~~l~~l~~~~ 287 (299)
T 1s70_B 215 LKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED-ILGYLEELQKKQ 287 (299)
T ss_dssp HHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG-GGHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH-HHHHHHHHHHHH
Confidence 4558999999999999999999999999999999999999999999999999999999763 445555555433
No 32
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=3.8e-39 Score=279.24 Aligned_cols=217 Identities=26% Similarity=0.321 Sum_probs=195.7
Q ss_pred CCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHH
Q 048601 135 GDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEI 214 (418)
Q Consensus 135 g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v 214 (418)
|+.+++++|+++++++... .+..+.+++++|+. .|+.+++++|+++|++++. .+..|.||||+|+..|+.+++
T Consensus 2 g~~~~i~~Ll~~g~~~~~~-~d~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~----~~~~g~t~L~~A~~~~~~~~v 74 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQ-TDRTGETALHLAAR--YSRSDAAKRLLEASADANI----QDNMGRTPLHAAVSADAQGVF 74 (223)
T ss_dssp ---CCEETTEETTCCTTCC-CTTTCCCHHHHHHH--TTCHHHHHHHHHTTCCTTC----CCTTSCCHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHHcCCCcccc-cCCCCCchHHHHHH--cCCHHHHHHHHHcCCCCCC----cCCCCCCHHHHHHHcCCHHHH
Confidence 6778888888888776432 34678899999998 8999999999999998887 889999999999999999999
Q ss_pred HHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCc
Q 048601 215 SSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTI 294 (418)
Q Consensus 215 ~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~ 294 (418)
++|++.+. ..++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus 75 ~~Ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 153 (223)
T 2f8y_A 75 QILIRNRA-TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM 153 (223)
T ss_dssp HHHHHBTT-SCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHcCC-CCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 99998664 46788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 048601 295 KDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIE 374 (418)
Q Consensus 295 ~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 374 (418)
++..|.||||+|+..|+.+++++ |+++|++++.++..|.|||++|+.+|+.+++++|++
T Consensus 154 ~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~ 212 (223)
T 2f8y_A 154 QNNREETPLFLAAREGSYETAKV---------------------LLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 212 (223)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHH---------------------HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHcCCHHHHHH---------------------HHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHH
Confidence 99999999999988877776665 899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 048601 375 FGADVE 380 (418)
Q Consensus 375 ~ga~~~ 380 (418)
+|+...
T Consensus 213 ~g~~~~ 218 (223)
T 2f8y_A 213 YNLVRS 218 (223)
T ss_dssp TTCSSC
T ss_pred cCCCcc
Confidence 998653
No 33
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=2.3e-40 Score=297.47 Aligned_cols=218 Identities=17% Similarity=0.151 Sum_probs=118.0
Q ss_pred ccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchH
Q 048601 122 FVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSE 201 (418)
Q Consensus 122 ~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~ 201 (418)
..|.||||+|+..|+.++|++|+++|++++.. ++.+|||+|+. .|+.+++++|+++|++++. .+..|.||
T Consensus 29 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~g~t~L~~A~~--~g~~~~v~~Ll~~ga~~~~----~d~~g~t~ 98 (285)
T 3kea_A 29 VHGHSASYYAIADNNVRLVCTLLNAGALKNLL----ENEFPLHQAAT--LEDTKIVKILLFSGLDDSQ----FDDKGNTA 98 (285)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC----TTCCHHHHHTT--SSSCHHHHHHHHTTCCTTC----CCTTSCCH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC----CCCCHHHHHHH--cCCHHHHHHHHHCCCCCCC----cCCCCCcH
Confidence 44555555555555555555555555544221 34555555555 5555555555555555554 55555555
Q ss_pred HHHHHHcCCHHHHHHHHhcccCCCCccCCCCC-CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHH
Q 048601 202 LHVAAAFGRTEEISSLVRMKEYESLDCRDKEG-RTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRR 280 (418)
Q Consensus 202 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~-~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~ 280 (418)
||+|+..|+.+++++|++.+. +++.++..| .||||+|+..|+.+++++|+++|++.... ..|.||||+|+..|+.+
T Consensus 99 L~~A~~~g~~~~v~~Ll~~ga--~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~ 175 (285)
T 3kea_A 99 LYYAVDSGNMQTVKLFVKKNW--RLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVD 175 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHHCG--GGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHhcCC--CCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHH
Confidence 555555555555555555433 445555555 45555555555555555555555544211 14555555555555555
Q ss_pred HHHHHHHcCCCCCccCCCCCCH-HHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHH
Q 048601 281 MVEMLIEMGADPTIKDDRGRSC-FDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHI 359 (418)
Q Consensus 281 ~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~ 359 (418)
++++|+++|++++.++..|+|| ||+|+..|+.+++++ |+++|++++..+. .
T Consensus 176 ~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~---------------------Ll~~gad~~~~~~-------~ 227 (285)
T 3kea_A 176 MMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQA---------------------LFKYDINIYSANL-------E 227 (285)
T ss_dssp HHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHH---------------------HTTSCBCSTTTTG-------G
T ss_pred HHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHH---------------------HHHcCCCCCCCCh-------h
Confidence 5555555555555555555554 555554444443333 5555555555441 3
Q ss_pred HHHcCCHHHHHHHHHcCCCCC
Q 048601 360 AAIKGHKHVVLLLIEFGADVE 380 (418)
Q Consensus 360 A~~~g~~~~v~~Ll~~ga~~~ 380 (418)
|+..|+.++|++|+++|++++
T Consensus 228 a~~~~~~~iv~~Ll~~g~~~~ 248 (285)
T 3kea_A 228 NVLLDDAEIAKMIIEKHVEYK 248 (285)
T ss_dssp GGTTTCHHHHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHcCCCCC
Confidence 444555555555555555554
No 34
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=4.3e-39 Score=289.14 Aligned_cols=200 Identities=25% Similarity=0.265 Sum_probs=137.9
Q ss_pred cCCCCchHHHHHHHcCCHHHHHHHHhcccCC-CCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHH
Q 048601 194 KTKDGWSELHVAAAFGRTEEISSLVRMKEYE-SLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHN 272 (418)
Q Consensus 194 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~ 272 (418)
.+..|.||||+|+..|+.+++++|++.+... .++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~ 84 (282)
T 1oy3_D 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHL 84 (282)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 4445555555555555555555555443311 134445555555555555555555555555555555555555555555
Q ss_pred HHHcCCHHHHHHHHHcC-----------------------------------------------CCCCccCCCCCCHHHH
Q 048601 273 AAANGDRRMVEMLIEMG-----------------------------------------------ADPTIKDDRGRSCFDV 305 (418)
Q Consensus 273 A~~~g~~~~v~~Ll~~g-----------------------------------------------~~~~~~~~~g~t~l~~ 305 (418)
|+..|+.+++++|+++| .+++.++..|.||||+
T Consensus 85 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~ 164 (282)
T 1oy3_D 85 ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHV 164 (282)
T ss_dssp HTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHH
T ss_pred HHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHH
Confidence 55555555555555544 4456666667777776
Q ss_pred HHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCC-CCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCC
Q 048601 306 ARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQY-GLTPLHIAAIKGHKHVVLLLIEFGADVECQDN 384 (418)
Q Consensus 306 A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~ 384 (418)
|+..|+.++ +++|+++|++++..+.. |+||||+|+..|+.++|++|+++|++++.+|.
T Consensus 165 A~~~g~~~~---------------------v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~ 223 (282)
T 1oy3_D 165 AVIHKDAEM---------------------VRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMY 223 (282)
T ss_dssp HHHTTCHHH---------------------HHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred HHHcCCHHH---------------------HHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccc
Confidence 666655554 55589999999998854 99999999999999999999999999999999
Q ss_pred CCCcHhHHHHhcCCcceeehhhhccCCccccc
Q 048601 385 EGHAPLHLAVEGGRVEPLLFIWLKQWGTMVSH 416 (418)
Q Consensus 385 ~g~t~l~~A~~~g~~~~v~~Ll~~~~g~~~~~ 416 (418)
.|+|||++|+..|+.+++++|+ ++|++++.
T Consensus 224 ~g~tpL~~A~~~~~~~~v~~Ll--~~ga~~~~ 253 (282)
T 1oy3_D 224 GGRTPLGSALLRPNPILARLLR--AHGAPEPE 253 (282)
T ss_dssp TSCCHHHHHHTSSCHHHHHHHH--HTTCCCCC
T ss_pred CCCCHHHHHHHcCCcHHHHHHH--HcCCCcCc
Confidence 9999999999999999999999 66777653
No 35
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=2.3e-38 Score=277.31 Aligned_cols=230 Identities=18% Similarity=0.216 Sum_probs=205.7
Q ss_pred cccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCch
Q 048601 121 AFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWS 200 (418)
Q Consensus 121 ~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t 200 (418)
+..|.++|+.|+..|+.+++++|++.|.++.. ....+.+++++|+. .|+.+++++|++.|.+++. ..+..|.|
T Consensus 6 d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~--~~~~g~t~L~~A~~--~~~~~~v~~Ll~~~~~~~~---~~~~~~~t 78 (240)
T 3eu9_A 6 DDYSTWDIVKATQYGIYERCRELVEAGYDVRQ--PDKENVTLLHWAAI--NNRIDLVKYYISKGAIVDQ---LGGDLNST 78 (240)
T ss_dssp SCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHH--TTCHHHHHHHHHTTCCTTC---CBTTTTBC
T ss_pred ccccchHHHHHHHcCChHHHHHHHHcCCCcCC--CCCCCCCHHHHHHH--hCCHHHHHHHHHcCCcchh---hcCCcCCC
Confidence 44688999999999999999999999977633 45678999999999 8999999999999998775 13455899
Q ss_pred HHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCC-H
Q 048601 201 ELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGD-R 279 (418)
Q Consensus 201 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~-~ 279 (418)
|||+|+..|+.+++++|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++ .
T Consensus 79 ~L~~A~~~~~~~~v~~Ll~~g~--~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~ 156 (240)
T 3eu9_A 79 PLHWATRQGHLSMVVQLMKYGA--DPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSV 156 (240)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSS
T ss_pred hhHHHHHcCCHHHHHHHHHcCC--CCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChH
Confidence 9999999999999999998755 678889999999999999999999999999999999999999999999997765 8
Q ss_pred HHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHH
Q 048601 280 RMVEMLIEMGADPTIKDD-RGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLH 358 (418)
Q Consensus 280 ~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~ 358 (418)
+++++|++.|++++..+. .|.||||+|+..|+.+++++ |+++|++++.++..|.|||+
T Consensus 157 ~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~g~~~~~~~~~g~t~l~ 215 (240)
T 3eu9_A 157 DPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISL---------------------LLEAGANVDAQNIKGESALD 215 (240)
T ss_dssp TTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHH---------------------HHHHTCCTTCBCTTSCBHHH
T ss_pred HHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHH---------------------HHHcCCCCCCcCCCCCCHHH
Confidence 999999999999999887 89999999988887776665 88999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCC
Q 048601 359 IAAIKGHKHVVLLLIEFGADVE 380 (418)
Q Consensus 359 ~A~~~g~~~~v~~Ll~~ga~~~ 380 (418)
+|+..|+.+++++|+++|++..
T Consensus 216 ~A~~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 216 LAKQRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp HHHHTTCHHHHHHHHHHC----
T ss_pred HHHHcCcHHHHHHHHHhhhccC
Confidence 9999999999999999998764
No 36
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=2.5e-39 Score=290.80 Aligned_cols=239 Identities=21% Similarity=0.173 Sum_probs=210.9
Q ss_pred HHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCH
Q 048601 132 VSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRT 211 (418)
Q Consensus 132 ~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~ 211 (418)
+...+.+.++.|+..+ .+ ...+..+.|+|++|+. .|+.+++++|+++|++++. . +|.||||+|+..|+.
T Consensus 7 i~~~~~~~v~~lL~~~-~~--~~~d~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~----~--~g~t~L~~A~~~g~~ 75 (285)
T 3kea_A 7 INTWKSKQLKSFLSSK-DT--FKADVHGHSASYYAIA--DNNVRLVCTLLNAGALKNL----L--ENEFPLHQAATLEDT 75 (285)
T ss_dssp GGGCCHHHHHHHHHST-TT--TCCCTTSCCHHHHHHH--TTCHHHHHHHHHTTGGGSC----C--TTCCHHHHHTTSSSC
T ss_pred HHhcCHHHHHHHHHhC-CC--CccCCCCCCHHHHHHH--cCCHHHHHHHHhCCCCCCC----C--CCCCHHHHHHHcCCH
Confidence 4455666666666554 22 3456789999999999 8999999999999998876 4 489999999999999
Q ss_pred HHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC-ccHHHHHHHcCCHHHHHHHHHcCC
Q 048601 212 EEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDG-KTSLHNAAANGDRRMVEMLIEMGA 290 (418)
Q Consensus 212 ~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g-~t~L~~A~~~g~~~~v~~Ll~~g~ 290 (418)
+++++|++.+. +++.++..|.||||+|+..|+.+++++|+++|++++..+..| .||||+|+..|+.+++++|+++|+
T Consensus 76 ~~v~~Ll~~ga--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~ 153 (285)
T 3kea_A 76 KIVKILLFSGL--DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP 153 (285)
T ss_dssp HHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSC
T ss_pred HHHHHHHHCCC--CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 99999998765 778899999999999999999999999999999999999999 799999999999999999999998
Q ss_pred CCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcH-HHHHHHcCCHHHH
Q 048601 291 DPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTP-LHIAAIKGHKHVV 369 (418)
Q Consensus 291 ~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v 369 (418)
+.... ..|.||||+|+..|+.+++++ |+++|++++.++..|+|| ||+|+..|+.+++
T Consensus 154 ~~~~~-~~g~t~L~~A~~~g~~~~v~~---------------------Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v 211 (285)
T 3kea_A 154 STFDL-AILLSCIHITIKNGHVDMMIL---------------------LLDYMTSTNTNNSLLFIPDIKLAIDNKDIEML 211 (285)
T ss_dssp TTCCC-STHHHHHHHHHHTTCHHHHHH---------------------HHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHH
T ss_pred ccccc-cCCccHHHHHHHcChHHHHHH---------------------HHHcCCCCCcccCCCCChHHHHHHHcCCHHHH
Confidence 77433 278999999999999998877 788999999999999998 9999999999999
Q ss_pred HHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccCCccc
Q 048601 370 LLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMV 414 (418)
Q Consensus 370 ~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~g~~~ 414 (418)
++|+++|++++.+|. .|+..|+.+++++|++ .|+++
T Consensus 212 ~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~--~g~~~ 247 (285)
T 3kea_A 212 QALFKYDINIYSANL-------ENVLLDDAEIAKMIIE--KHVEY 247 (285)
T ss_dssp HHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHH--HHHHH
T ss_pred HHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHH--cCCCC
Confidence 999999999998873 5678999999999994 44443
No 37
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=2.2e-37 Score=269.85 Aligned_cols=193 Identities=25% Similarity=0.333 Sum_probs=174.2
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-----CCCCCCCccHHH
Q 048601 197 DGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADK-----EAKGKDGKTSLH 271 (418)
Q Consensus 197 ~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~-----~~~~~~g~t~L~ 271 (418)
.|.||||+|+..|+.+++++|++..+ .+++.+|..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEG-CEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTC-SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcC-CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 47899999999999999999998633 478889999999999999999999999999999886 667788999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCccCC-------------CCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHH
Q 048601 272 NAAANGDRRMVEMLIEMGADPTIKDD-------------RGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLES 338 (418)
Q Consensus 272 ~A~~~g~~~~v~~Ll~~g~~~~~~~~-------------~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~ 338 (418)
+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~--------------------- 139 (232)
T 2rfa_A 81 IAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRL--------------------- 139 (232)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHH---------------------
T ss_pred HHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHH---------------------
Confidence 99999999999999999999988765 79999999988877776665
Q ss_pred HHhCCCCCCcCCCCCCcHHHHHHHcCCHHHH----HHHHHcCCCC------CcCCCCCCcHhHHHHhcCCcceeehhhhc
Q 048601 339 LLDKGASTNYCDQYGLTPLHIAAIKGHKHVV----LLLIEFGADV------ECQDNEGHAPLHLAVEGGRVEPLLFIWLK 408 (418)
Q Consensus 339 Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~------~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~ 408 (418)
|+++|++++.+|..|+||||+|+..|+.+++ ++|+++|+++ +.+|..|+|||++|++.|+.+++++|+++
T Consensus 140 Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 140 LIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 8999999999999999999999999999988 9999999988 58999999999999999999999999966
Q ss_pred cCC
Q 048601 409 QWG 411 (418)
Q Consensus 409 ~~g 411 (418)
...
T Consensus 220 g~~ 222 (232)
T 2rfa_A 220 RKH 222 (232)
T ss_dssp HHH
T ss_pred Ccc
Confidence 543
No 38
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=9.2e-37 Score=259.81 Aligned_cols=190 Identities=26% Similarity=0.379 Sum_probs=177.1
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHH
Q 048601 196 KDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAA 275 (418)
Q Consensus 196 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~ 275 (418)
..+.||||.|+..|+.+.+++|+..++ .+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 81 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTT-YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGA 81 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence 457799999999999999999998654 4778899999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHH-HcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCC-CCCCcCCCCC
Q 048601 276 NGDRRMVEMLI-EMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKG-ASTNYCDQYG 353 (418)
Q Consensus 276 ~g~~~~v~~Ll-~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g-~~~~~~~~~g 353 (418)
.|+.+++++|+ ..+++++..+..|.||||.|+..|+.+++++ |+++| ++++.++..|
T Consensus 82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~g~~~~~~~~~~g 140 (201)
T 3hra_A 82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKL---------------------LLEDGREDIDFQNDFG 140 (201)
T ss_dssp TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHH---------------------HHHHCCCCTTCCCTTS
T ss_pred cCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHH---------------------HHHcCCCCcCCCCCCC
Confidence 99999999999 5677999999999999999988887776666 78888 8999999999
Q ss_pred CcHHHHHHHcCC-----HHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhh
Q 048601 354 LTPLHIAAIKGH-----KHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWL 407 (418)
Q Consensus 354 ~t~L~~A~~~g~-----~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~ 407 (418)
+||||+|+..++ .+++++|+++|++++.+|..|+|||++|++.|+.+++++|++
T Consensus 141 ~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 141 YTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp CCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred CCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHh
Confidence 999999999998 999999999999999999999999999999999999999994
No 39
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=3.1e-37 Score=253.65 Aligned_cols=159 Identities=43% Similarity=0.612 Sum_probs=113.8
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHH
Q 048601 235 TPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEV 314 (418)
Q Consensus 235 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~ 314 (418)
++|+.||+.|+.++|++|+++|++++.+|..|.||||+|+..++.+++++|+++|++++.++..|+||||+|+..|+.++
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~ 85 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV 85 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence 35677777777777777777777777777777777777777777777777777777777777777777777766666555
Q ss_pred HHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHH
Q 048601 315 LEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAV 394 (418)
Q Consensus 315 ~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~ 394 (418)
+++ |+++|+++|.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+|||++|+
T Consensus 86 v~~---------------------Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~ 144 (169)
T 4gpm_A 86 VKL---------------------LISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAR 144 (169)
T ss_dssp HHH---------------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHH---------------------HHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence 444 67777777777777777777777777777777777777777777777777777777
Q ss_pred hcCCcceeehhhhccCCccccc
Q 048601 395 EGGRVEPLLFIWLKQWGTMVSH 416 (418)
Q Consensus 395 ~~g~~~~v~~Ll~~~~g~~~~~ 416 (418)
+.|+.+++++|+ +.|++++|
T Consensus 145 ~~g~~~iv~~Ll--~~GA~ie~ 164 (169)
T 4gpm_A 145 EHGNEEVVKLLE--KQGGWLEH 164 (169)
T ss_dssp HTTCHHHHHHHH--TC------
T ss_pred HcCCHHHHHHHH--HCCCCcCC
Confidence 777777777777 66666665
No 40
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1.4e-38 Score=278.10 Aligned_cols=197 Identities=28% Similarity=0.331 Sum_probs=133.0
Q ss_pred cCCCCchHHHHHHHcCCHHHHHHHHhcccC--CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHH
Q 048601 194 KTKDGWSELHVAAAFGRTEEISSLVRMKEY--ESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLH 271 (418)
Q Consensus 194 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~ 271 (418)
.|.+|.||||+|+..|+.+++++|++.... .+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||
T Consensus 4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 83 (236)
T 1ikn_D 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLH 83 (236)
T ss_dssp ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHH
T ss_pred CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence 566677777777777777777777665432 245666777777777777777777777777777777777777777777
Q ss_pred HHHHcCCHHHHHHHHHcCCC------CCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCC
Q 048601 272 NAAANGDRRMVEMLIEMGAD------PTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAS 345 (418)
Q Consensus 272 ~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~ 345 (418)
+|+..|+.+++++|++.|++ ++..+..|.||||+|+..|+.+++++ |+++|++
T Consensus 84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~g~~ 142 (236)
T 1ikn_D 84 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVEL---------------------LVSLGAD 142 (236)
T ss_dssp HHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHH---------------------HHHHTCC
T ss_pred HHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHH---------------------HHHcCCC
Confidence 77777777777777777654 34556667777777666665555444 6667777
Q ss_pred CCcCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccCCcc
Q 048601 346 TNYCDQ-YGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTM 413 (418)
Q Consensus 346 ~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~g~~ 413 (418)
++.++. .|.||||+|+..|+.++|++|+++|++++.+|..|+|||++|+..|+.+++++|+ +.|++
T Consensus 143 ~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll--~~ga~ 209 (236)
T 1ikn_D 143 VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLG--QLTLE 209 (236)
T ss_dssp TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHH--TTSCG
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHH--Hcchh
Confidence 777665 6777777777777777777777777777777777777777777777777777777 44444
No 41
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.2e-36 Score=265.15 Aligned_cols=202 Identities=25% Similarity=0.318 Sum_probs=170.1
Q ss_pred hhhhHHHHHHHhhCCHHHHHHHHHc-CCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCC---CCccCCCCCC
Q 048601 159 AESLYRVATELAANSEDMVSLLLRA-GLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYE---SLDCRDKEGR 234 (418)
Q Consensus 159 ~~~~l~~a~~~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~~~~~ 234 (418)
+.|+|+.|+. .|+.+++++|++. |++++. .+..|.||||+|+..|+.+++++|++.+... ..+..|..|.
T Consensus 3 g~t~L~~A~~--~g~~~~v~~Ll~~~g~~~~~----~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~ 76 (232)
T 2rfa_A 3 WESPLLLAAK--ENDVQALSKLLKFEGCEVHQ----RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQ 76 (232)
T ss_dssp TTCHHHHHHH--TTCHHHHHHHHTTTCSCTTC----CCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTC
T ss_pred CCCHHHHHHH--cCCHHHHHHHHHhcCCCccc----CCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCc
Confidence 4556666666 5666666666665 666666 7888999999999999999999999876521 1256678899
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-------------CCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCC
Q 048601 235 TPLHLAVNKTSIGCAKVLLESGADKEAKGK-------------DGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRS 301 (418)
Q Consensus 235 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-------------~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t 301 (418)
||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+++|++++.+|..|+|
T Consensus 77 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t 156 (232)
T 2rfa_A 77 TALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNT 156 (232)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC
Confidence 999999999999999999999999888765 7999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCC------CcCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 048601 302 CFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAST------NYCDQYGLTPLHIAAIKGHKHVVLLLIEF 375 (418)
Q Consensus 302 ~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 375 (418)
|||+|+..|+.+++.. ++++|+++|+++ +.++..|+||||+|+.+|+.++|++|+++
T Consensus 157 ~L~~A~~~~~~~~~~~-----------------i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 157 VLHILILQPNKTFACQ-----------------MYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp HHHHHHTCSCHHHHHH-----------------HHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHH-----------------HHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 9999999999998754 467799999988 58899999999999999999999999999
Q ss_pred CCCCCcCC
Q 048601 376 GADVECQD 383 (418)
Q Consensus 376 ga~~~~~d 383 (418)
|++.....
T Consensus 220 g~~~~~~~ 227 (232)
T 2rfa_A 220 RKHIAAAH 227 (232)
T ss_dssp HHHC----
T ss_pred Cccchhhh
Confidence 98765443
No 42
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.1e-36 Score=264.59 Aligned_cols=195 Identities=27% Similarity=0.393 Sum_probs=176.7
Q ss_pred CchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCCC-CCCCCccHHHHHH
Q 048601 198 GWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESG--ADKEA-KGKDGKTSLHNAA 274 (418)
Q Consensus 198 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~--~~~~~-~~~~g~t~L~~A~ 274 (418)
|.||||+|+..|+.+++++|++.+. ...+..+..|.||||+|+..|+.+++++|+++| .+++. .+..|.||||+|+
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~ 80 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKP-SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC 80 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCG-GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCc-cccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 5799999999999999999998765 344558899999999999999999999999999 55555 7889999999999
Q ss_pred HcCCHHHHHHHHHcC--CCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCC
Q 048601 275 ANGDRRMVEMLIEMG--ADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQY 352 (418)
Q Consensus 275 ~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~ 352 (418)
..|+.+++++|+++| ++++..+..|.||||.|+..|+.+++++ |+++|++++.++..
T Consensus 81 ~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~---------------------Ll~~g~~~~~~~~~ 139 (228)
T 2dzn_A 81 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF---------------------LIENGASVRIKDKF 139 (228)
T ss_dssp HHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHH---------------------HHHTTCCSCCCCTT
T ss_pred HcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHH---------------------HHHcCCCccccCCC
Confidence 999999999999999 8899999999999999988887776665 88999999999999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCcHhHHHHhcCCcceeehhhhccCCcccc
Q 048601 353 GLTPLHIAAIKGHKHVVLLLIEFG-ADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMVS 415 (418)
Q Consensus 353 g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~g~~~~ 415 (418)
|.||||+|+..|+.+++++|+++| ++++.+|..|+|||++|+..|+.+++++|++ +.|++++
T Consensus 140 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~~ga~~~ 202 (228)
T 2dzn_A 140 NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE-KYGAEYD 202 (228)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-HHCCCSC
T ss_pred CCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHH-hcCCCCC
Confidence 999999999999999999999999 9999999999999999999999999999992 3355544
No 43
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-37 Score=282.55 Aligned_cols=226 Identities=25% Similarity=0.321 Sum_probs=197.8
Q ss_pred eeecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCC
Q 048601 118 FKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKD 197 (418)
Q Consensus 118 ~~~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~ 197 (418)
......|.|+|+.||..|++++|++|+++|++++. .+..+.|+||+|+. .|+.+++++|+++|++++. .+..
T Consensus 34 ~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~--~g~~~~v~~Ll~~ga~~~~----~~~~ 105 (299)
T 1s70_B 34 TKVKFDDGAVFLAACSSGDTEEVLRLLERGADINY--ANVDGLTALHQACI--DDNVDMVKFLVENGANINQ----PDNE 105 (299)
T ss_dssp CCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTC--BCTTCCBHHHHHHH--TTCHHHHHHHHHTTCCTTC----CCTT
T ss_pred cccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcc--cCCCCCCHHHHHHH--cCCHHHHHHHHHCCCCCCC----CCCC
Confidence 34556799999999999999999999999987643 45678999999999 8999999999999999988 8999
Q ss_pred CchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCC-----------------
Q 048601 198 GWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLES-GADK----------------- 259 (418)
Q Consensus 198 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~-~~~~----------------- 259 (418)
|.||||+|+..|+.+++++|++.+. +++..+..|.||||+|+..++.+++++++.. +.++
T Consensus 106 g~tpL~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 183 (299)
T 1s70_B 106 GWIPLHAAASCGYLDIAEYLISQGA--HVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQ 183 (299)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHcCCHHHHHHHHhCCC--CCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHH
Confidence 9999999999999999999998765 7788999999999999999999999877753 4332
Q ss_pred ---------CCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHc
Q 048601 260 ---------EAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARR 330 (418)
Q Consensus 260 ---------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~ 330 (418)
...+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++
T Consensus 184 ~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~------------- 250 (299)
T 1s70_B 184 WLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRI------------- 250 (299)
T ss_dssp HHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH-------------
T ss_pred HHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHH-------------
Confidence 2356789999999999999999999999999999999999999999998888776665
Q ss_pred CCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 048601 331 GELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEF 375 (418)
Q Consensus 331 g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 375 (418)
|+++|++++.+|..|.||||+|+.. ..+.++.|++.
T Consensus 251 --------Ll~~gad~~~~d~~g~t~l~~A~~~-~~~~l~~l~~~ 286 (299)
T 1s70_B 251 --------LVENLCDMEAVNKVGQTAFDVADED-ILGYLEELQKK 286 (299)
T ss_dssp --------HHHTTCCTTCCCTTSCCTTTSCCSG-GGHHHHHHHHH
T ss_pred --------HHHcCCCCCCcCCCCCCHHHHHHHH-HHHHHHHHHHH
Confidence 8999999999999999999999764 45555555544
No 44
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=3.2e-38 Score=289.14 Aligned_cols=256 Identities=17% Similarity=0.152 Sum_probs=192.6
Q ss_pred cCCccccccccccCCCCCccceeeeecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCC---------------hhhh
Q 048601 95 FGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLS---------------SAEA 159 (418)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~---------------~~~~ 159 (418)
....+.++.++..-. ++.. .+..|.++++ |+.++|++|+++|.+...... ....
T Consensus 29 ~~~~dlv~~ll~~ga-----~i~~-~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~ 97 (327)
T 1sw6_A 29 TFTHDLTSDFLSSPL-----KIMK-ALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSN 97 (327)
T ss_dssp ECCTTCCCSTTTSSC-----CCEE-CBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------
T ss_pred hhcCchHHHHhhCCc-----cccc-CCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCc
Confidence 334445555554422 1222 2345777766 999999999999876432100 0001
Q ss_pred hhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHH
Q 048601 160 ESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHL 239 (418)
Q Consensus 160 ~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~ 239 (418)
...+++|+. .+..+++++|++.|++++.. .+..|.||||+|+..|+.++|++|++.+. +++.+|..|.||||+
T Consensus 98 ~~~~~~a~~--~~~~~~~~~l~~~g~dvn~~---~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Ga--d~n~~d~~g~TpLh~ 170 (327)
T 1sw6_A 98 QQQQHVSFD--SLLQEVNDAFPNTQLNLNIP---VDEHGNTPLHWLTSIANLELVKHLVKHGS--NRLYGDNMGESCLVK 170 (327)
T ss_dssp ------CHH--HHHHHHHHHCTTSCCCSCSC---CSTTCCCHHHHHHHTTCHHHHHHHHHTTC--CTTBCCTTCCCHHHH
T ss_pred cchhHHHHH--hhHHHHHHHHHhcCCCcccc---cCCCCCcHHHHHHHcCCHHHHHHHHHcCC--CCCCcCCCCCCHHHH
Confidence 122355555 56789999999999988851 47889999999999999999999998765 788999999999999
Q ss_pred HHHcCC---HHHHHHHHHcC-CCCCCCCCCCccHHHHHHH----cCCHHHHHHHHHc--------------------CCC
Q 048601 240 AVNKTS---IGCAKVLLESG-ADKEAKGKDGKTSLHNAAA----NGDRRMVEMLIEM--------------------GAD 291 (418)
Q Consensus 240 A~~~~~---~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~----~g~~~~v~~Ll~~--------------------g~~ 291 (418)
|+..|+ .++++.|++.+ ++++.++..|.||||+|+. .|+.+++++|++. |++
T Consensus 171 A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~ 250 (327)
T 1sw6_A 171 AVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK 250 (327)
T ss_dssp HHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-------
T ss_pred HHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCC
Confidence 999998 78888888886 7799999999999999999 8999999999987 899
Q ss_pred CCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHH
Q 048601 292 PTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLL 371 (418)
Q Consensus 292 ~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~ 371 (418)
++.++..|.||||.|+. +++|+++ ++|.+|..|+||||+|+.+|+.++|++
T Consensus 251 ~~~~~~~g~t~L~~a~~---------------------------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~ 301 (327)
T 1sw6_A 251 PNDKNGERKDSILENLD---------------------------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDA 301 (327)
T ss_dssp ---------CHHHHHCS---------------------------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHH
T ss_pred cccccccCCChhHHHHH---------------------------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 99999999999999874 3457777 688999999999999999999999999
Q ss_pred HHHcCCCCCcCCCCCCcHhHHHHhcC
Q 048601 372 LIEFGADVECQDNEGHAPLHLAVEGG 397 (418)
Q Consensus 372 Ll~~ga~~~~~d~~g~t~l~~A~~~g 397 (418)
|+++|+|++.+|..|+||||+|+++|
T Consensus 302 Ll~~Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 302 LLDYGADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred HHHcCCCCcccCCCCCCHHHHHHhcC
Confidence 99999999999999999999999875
No 45
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1.4e-37 Score=271.85 Aligned_cols=181 Identities=24% Similarity=0.326 Sum_probs=162.1
Q ss_pred cCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC------CCCCCCCCc
Q 048601 194 KTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGAD------KEAKGKDGK 267 (418)
Q Consensus 194 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~------~~~~~~~g~ 267 (418)
.+..|.||||+|+..|+.+++++|++.+. +++.++..|.||||+|+..|+.+++++|+++|++ ++..+..|.
T Consensus 41 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~ 118 (236)
T 1ikn_D 41 QNNLQQTPLHLAVITNQPEIAEALLGAGC--DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH 118 (236)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHCCCSCCC--CSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCC--CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCC
Confidence 88889999999999999999999997654 7788999999999999999999999999999876 466788899
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCC
Q 048601 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDD-RGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAST 346 (418)
Q Consensus 268 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~ 346 (418)
||||+|+..|+.+++++|+++|++++.++. .|.||||+|+..|+.+++++ |+++|+++
T Consensus 119 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~---------------------Ll~~ga~~ 177 (236)
T 1ikn_D 119 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL---------------------LLKCGADV 177 (236)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHH---------------------HHTTTCCS
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH---------------------HHHcCCCC
Confidence 999999999999999999999999999997 99999999998887776665 89999999
Q ss_pred CcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCcHhHHHHhcC
Q 048601 347 NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE--CQDNEGHAPLHLAVEGG 397 (418)
Q Consensus 347 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~--~~d~~g~t~l~~A~~~g 397 (418)
+.++..|.||||+|+.+|+.+++++|+++|++.. .++..|.||.+.+....
T Consensus 178 ~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~ 230 (236)
T 1ikn_D 178 NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFT 230 (236)
T ss_dssp CCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC----
T ss_pred CcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhcccc
Confidence 9999999999999999999999999999999875 78889999887665543
No 46
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=1.4e-35 Score=243.82 Aligned_cols=159 Identities=39% Similarity=0.592 Sum_probs=141.4
Q ss_pred hHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCH
Q 048601 200 SELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDR 279 (418)
Q Consensus 200 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~ 279 (418)
++|+.|+..|+.++|++|++.+. +++.+|..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Ga--dvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~ 83 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGA--DVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHK 83 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCC--CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCH
Confidence 47899999999999999998765 7888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHH
Q 048601 280 RMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHI 359 (418)
Q Consensus 280 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~ 359 (418)
+++++|+++|++++.+|..|+||||+|+..|+.+++++ |+++|++++.+|..|+||||+
T Consensus 84 ~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~---------------------Ll~~gad~~~~d~~G~TpL~~ 142 (169)
T 4gpm_A 84 EVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKL---------------------LISKGADVNTSDSDGRTPLDL 142 (169)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH---------------------HHHTTCCTTCCCTTSCCHHHH
T ss_pred HHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHH---------------------HHHcCCCccccCCCCCCHHHH
Confidence 99999999999999999999999999988877776655 889999999999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCc
Q 048601 360 AAIKGHKHVVLLLIEFGADVEC 381 (418)
Q Consensus 360 A~~~g~~~~v~~Ll~~ga~~~~ 381 (418)
|+.+|+.+++++|+++||+++.
T Consensus 143 A~~~g~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 143 AREHGNEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp HHHTTCHHHHHHHHTC------
T ss_pred HHHcCCHHHHHHHHHCCCCcCC
Confidence 9999999999999999999864
No 47
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=1.3e-36 Score=269.04 Aligned_cols=190 Identities=25% Similarity=0.321 Sum_probs=166.3
Q ss_pred CchHHHHHHHcCCHH----HHHHHHhcccCCCCcc----CCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCCC----
Q 048601 198 GWSELHVAAAFGRTE----EISSLVRMKEYESLDC----RDKEGRTPLHLAVNK---TSIGCAKVLLESGADKEAK---- 262 (418)
Q Consensus 198 ~~t~L~~A~~~g~~~----~v~~Ll~~~~~~~~~~----~~~~~~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~---- 262 (418)
|.||||.|+..|+.+ ++++|++.+. +++. .|..|.||||+|+.. |+.+++++|+++|++++..
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~--~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 79 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSK--YLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV 79 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTC--CTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCC--CcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence 678999999999997 4455555444 6666 788899999999998 9999999999988776533
Q ss_pred -------CCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCC-------------CCCHHHHHHHcCCHHHHHHHhcCc
Q 048601 263 -------GKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDR-------------GRSCFDVARDKGHIEVLEVLQRGE 322 (418)
Q Consensus 263 -------~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-------------g~t~l~~A~~~~~~~~~~~l~~~~ 322 (418)
+..|.||||+|+..|+.+++++|+++|++++.++.. |.||||+|+..|+.+++++
T Consensus 80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~----- 154 (256)
T 2etb_A 80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTY----- 154 (256)
T ss_dssp GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHH-----
T ss_pred ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHH-----
Confidence 367999999999999999999999999999988876 9999999998887776666
Q ss_pred hHHHHHHcCCHHHHHHHHh---CCCCCCcCCCCCCcHHHHHHH--cCCHH-------HHHHHHHcCCCC-------CcCC
Q 048601 323 AVLTAARRGELEGLESLLD---KGASTNYCDQYGLTPLHIAAI--KGHKH-------VVLLLIEFGADV-------ECQD 383 (418)
Q Consensus 323 ~~~~a~~~g~~~~~~~Ll~---~g~~~~~~~~~g~t~L~~A~~--~g~~~-------~v~~Ll~~ga~~-------~~~d 383 (418)
|++ +|+++|.+|..|+||||+|+. .++.+ ++++|+++|+++ +.+|
T Consensus 155 ----------------Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d 218 (256)
T 2etb_A 155 ----------------LLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISN 218 (256)
T ss_dssp ----------------HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCC
T ss_pred ----------------HHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccC
Confidence 888 999999999999999999999 88888 999999999999 9999
Q ss_pred CCCCcHhHHHHhcCCcceeehhhhccC
Q 048601 384 NEGHAPLHLAVEGGRVEPLLFIWLKQW 410 (418)
Q Consensus 384 ~~g~t~l~~A~~~g~~~~v~~Ll~~~~ 410 (418)
..|+|||++|++.|+.+++++|+++..
T Consensus 219 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~ 245 (256)
T 2etb_A 219 HQGLTPLKLAAKEGKIEIFRHILQREF 245 (256)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence 999999999999999999999996543
No 48
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=1.8e-36 Score=270.76 Aligned_cols=195 Identities=22% Similarity=0.288 Sum_probs=170.7
Q ss_pred cCCCCchHHHHHHHcCCHHHHHHHHhccc--CCCCc----cCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCC-----
Q 048601 194 KTKDGWSELHVAAAFGRTEEISSLVRMKE--YESLD----CRDKEGRTPLHLAVNK---TSIGCAKVLLESGADK----- 259 (418)
Q Consensus 194 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~--~~~~~----~~~~~~~t~L~~A~~~---~~~~~v~~Ll~~~~~~----- 259 (418)
.+..|.||||.|+..|+.++++.|++... ...++ ..+..|.||||+|+.. |+.+++++|+++|+++
T Consensus 9 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~ 88 (273)
T 2pnn_A 9 PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQ 88 (273)
T ss_dssp --CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHH
T ss_pred CCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhH
Confidence 78889999999999999999999997532 12232 3578999999999987 9999999999987652
Q ss_pred --C----CCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCC--------------CCCCHHHHHHHcCCHHHHHHHh
Q 048601 260 --E----AKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDD--------------RGRSCFDVARDKGHIEVLEVLQ 319 (418)
Q Consensus 260 --~----~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--------------~g~t~l~~A~~~~~~~~~~~l~ 319 (418)
+ ..+..|.||||+|+..|+.+++++|+++|++++.++. .|.||||+|+..|+.+++++
T Consensus 89 ~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~-- 166 (273)
T 2pnn_A 89 FVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF-- 166 (273)
T ss_dssp HHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHH--
T ss_pred HhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHH--
Confidence 2 2567899999999999999999999999999999887 79999999998887776666
Q ss_pred cCchHHHHHHcCCHHHHHHHHh---CCCCCCcCCCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCCC-------
Q 048601 320 RGEAVLTAARRGELEGLESLLD---KGASTNYCDQYGLTPLHIAAIKGH---------KHVVLLLIEFGADVE------- 380 (418)
Q Consensus 320 ~~~~~~~a~~~g~~~~~~~Ll~---~g~~~~~~~~~g~t~L~~A~~~g~---------~~~v~~Ll~~ga~~~------- 380 (418)
|++ +|++++.+|..|+||||+|+..|+ .+++++|+++|++++
T Consensus 167 -------------------Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~ 227 (273)
T 2pnn_A 167 -------------------LLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEE 227 (273)
T ss_dssp -------------------HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGG
T ss_pred -------------------HHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhccccccccc
Confidence 888 999999999999999999999998 899999999999997
Q ss_pred cCCCCCCcHhHHHHhcCCcceeehhhhcc
Q 048601 381 CQDNEGHAPLHLAVEGGRVEPLLFIWLKQ 409 (418)
Q Consensus 381 ~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~ 409 (418)
.+|..|+|||++|++.|+.+++++|+++.
T Consensus 228 ~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g 256 (273)
T 2pnn_A 228 ITNRKGLTPLALAASSGKIGVLAYILQRE 256 (273)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHhChHHHHHHHHHCC
Confidence 48999999999999999999999999543
No 49
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=2e-34 Score=245.28 Aligned_cols=192 Identities=18% Similarity=0.226 Sum_probs=150.3
Q ss_pred hhHHHHHHHhhCCHHHHHHHHHcCC-CCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHH
Q 048601 161 SLYRVATELAANSEDMVSLLLRAGL-SIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHL 239 (418)
Q Consensus 161 ~~l~~a~~~~~~~~~~v~~Ll~~g~-~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~ 239 (418)
++++.|+. .|+.++++.|++.+. +++. .+..|.||||+|+..|+.+++++|++.+. +++.++..|.||||+
T Consensus 7 ~~L~~A~~--~g~~~~v~~ll~~~~~~~~~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--~~~~~~~~g~t~l~~ 78 (201)
T 3hra_A 7 GALLEAAN--QRDTKKVKEILQDTTYQVDE----VDTEGNTPLNIAVHNNDIEIAKALIDRGA--DINLQNSISDSPYLY 78 (201)
T ss_dssp THHHHHHH--TTCHHHHHHHHTCTTCCTTC----CCTTSCCHHHHHHHHTCHHHHHHHHHTTC--CTTCCCTTSCCHHHH
T ss_pred cHHHHHHH--hccHHHHHHHHHcCCCCCCC----CCCCCCCHHHHHHHcCCHHHHHHHHHcCC--CCCCCCCCCCCHHHH
Confidence 44444444 444444444444443 4554 67788888888888888888888887654 677788888899999
Q ss_pred HHHcCCHHHHHHHH-HcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHH
Q 048601 240 AVNKTSIGCAKVLL-ESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMG-ADPTIKDDRGRSCFDVARDKGHIEVLEV 317 (418)
Q Consensus 240 A~~~~~~~~v~~Ll-~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~ 317 (418)
|+..|+.+++++|+ ..+++++..+..|.||||+|+..|+.+++++|+++| ++++.++..|.||||+|+..+...
T Consensus 79 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~---- 154 (201)
T 3hra_A 79 AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGN---- 154 (201)
T ss_dssp HHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCS----
T ss_pred HHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccch----
Confidence 99888999998888 567788888888899999999999999999999888 888888888999999888776510
Q ss_pred HhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 048601 318 LQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFG 376 (418)
Q Consensus 318 l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 376 (418)
.++.+++++|+++|++++.++..|.||||+|+.+|+.+++++|+++|
T Consensus 155 ------------~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 155 ------------QLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp ------------HHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred ------------hhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 01134555588899999999999999999999999999999999876
No 50
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=2e-35 Score=263.96 Aligned_cols=224 Identities=21% Similarity=0.291 Sum_probs=169.7
Q ss_pred ecccchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCc
Q 048601 120 IAFVGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGW 199 (418)
Q Consensus 120 ~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 199 (418)
.+..|.|+||+|+..|+.++|+.|++.+... +.+++......+..|.
T Consensus 9 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~---------------------------------~~~~~~~~~~~~~~g~ 55 (273)
T 2pnn_A 9 PRLYDRRSIFDAVAQSNCQELESLLPFLQRS---------------------------------KKRLTDSEFKDPETGK 55 (273)
T ss_dssp --CCCHHHHHHHHHTTCSSTTTTHHHHHHHS---------------------------------CCCTTSGGGSCTTTCC
T ss_pred CCcccchHHHHHHHcCCHHHHHHHHHHHhhc---------------------------------ccccCCcccccCcCCC
Confidence 4556888888888888888888887654322 2222211111466788
Q ss_pred hHHHHHHHc---CCHHHHHHHHhcccC---------CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC---
Q 048601 200 SELHVAAAF---GRTEEISSLVRMKEY---------ESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGK--- 264 (418)
Q Consensus 200 t~L~~A~~~---g~~~~v~~Ll~~~~~---------~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~--- 264 (418)
||||+|+.. |+.+++++|++.+.. ......|..|.||||+|+..|+.+++++|+++|++++..+.
T Consensus 56 tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~ 135 (273)
T 2pnn_A 56 TCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDF 135 (273)
T ss_dssp CHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGG
T ss_pred CHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccc
Confidence 888888876 888888888876531 12233567899999999999999999999999999999887
Q ss_pred -----------CCccHHHHHHHcCCHHHHHHHHH---cCCCCCccCCCCCCHHHHHHHcCC--HHHHHHHhcCchHHHHH
Q 048601 265 -----------DGKTSLHNAAANGDRRMVEMLIE---MGADPTIKDDRGRSCFDVARDKGH--IEVLEVLQRGEAVLTAA 328 (418)
Q Consensus 265 -----------~g~t~L~~A~~~g~~~~v~~Ll~---~g~~~~~~~~~g~t~l~~A~~~~~--~~~~~~l~~~~~~~~a~ 328 (418)
.|.||||+|+..|+.+++++|++ +|++++.+|..|+||||+|+..|+ .+..+++
T Consensus 136 ~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~---------- 205 (273)
T 2pnn_A 136 FKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFV---------- 205 (273)
T ss_dssp GSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHH----------
T ss_pred cccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHH----------
Confidence 79999999999999999999999 999999999999999999999776 3333322
Q ss_pred HcCCHHHHHHHHhCCCCCC-------cCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCcCCCCCCcHh
Q 048601 329 RRGELEGLESLLDKGASTN-------YCDQYGLTPLHIAAIKGHKHVVLLLIEFGA-DVECQDNEGHAPL 390 (418)
Q Consensus 329 ~~g~~~~~~~Ll~~g~~~~-------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~d~~g~t~l 390 (418)
.+++++|+++|++++ .+|..|+||||+|+.+|+.++|++|+++|+ |+......+++|-
T Consensus 206 ----~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~ 271 (273)
T 2pnn_A 206 ----TSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHH 271 (273)
T ss_dssp ----HHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC-------------
T ss_pred ----HHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhcc
Confidence 467778999999987 489999999999999999999999999999 8877777766653
No 51
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=8.5e-35 Score=257.37 Aligned_cols=189 Identities=23% Similarity=0.289 Sum_probs=159.6
Q ss_pred HHHHHHcCCCCcccccccCCCCchHHHHHHHc---CCHHHHHHHHhcccCCC---------CccCCCCCCcHHHHHHHcC
Q 048601 177 VSLLLRAGLSIEIDERVKTKDGWSELHVAAAF---GRTEEISSLVRMKEYES---------LDCRDKEGRTPLHLAVNKT 244 (418)
Q Consensus 177 v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~---g~~~~v~~Ll~~~~~~~---------~~~~~~~~~t~L~~A~~~~ 244 (418)
+++|++.|++++......+..|.||||+|+.. |+.+++++|++.+.... ....|..|.||||+|+..|
T Consensus 22 l~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g 101 (256)
T 2etb_A 22 LEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKR 101 (256)
T ss_dssp HHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTT
T ss_pred HHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcC
Confidence 34555666666532222577888999999998 99999999998765221 1124577999999999999
Q ss_pred CHHHHHHHHHcCCCCCCCCCC-------------CccHHHHHHHcCCHHHHHHHHH---cCCCCCccCCCCCCHHHHHHH
Q 048601 245 SIGCAKVLLESGADKEAKGKD-------------GKTSLHNAAANGDRRMVEMLIE---MGADPTIKDDRGRSCFDVARD 308 (418)
Q Consensus 245 ~~~~v~~Ll~~~~~~~~~~~~-------------g~t~L~~A~~~g~~~~v~~Ll~---~g~~~~~~~~~g~t~l~~A~~ 308 (418)
+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|++ +|++++.+|..|+||||+|+.
T Consensus 102 ~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~ 181 (256)
T 2etb_A 102 SLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVM 181 (256)
T ss_dssp CHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHH
Confidence 999999999999999999886 9999999999999999999999 999999999999999999998
Q ss_pred --cCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCC-------CcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 048601 309 --KGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAST-------NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADV 379 (418)
Q Consensus 309 --~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~ 379 (418)
.++.+..+.+ .+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++|++.
T Consensus 182 ~~~~~~~~~~~~--------------~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~ 247 (256)
T 2etb_A 182 IADNSPENSALV--------------IHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG 247 (256)
T ss_dssp HCCSCHHHHHHH--------------HHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccCCchhhHHH--------------HHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence 7777744432 45777899999999 899999999999999999999999999998765
No 52
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=100.00 E-value=2.8e-35 Score=261.16 Aligned_cols=193 Identities=22% Similarity=0.235 Sum_probs=167.0
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHh----cccCCCCccC----CCCCCcHHHHHH---HcCCHHHHHHHHHcCCC-----
Q 048601 195 TKDGWSELHVAAAFGRTEEISSLVR----MKEYESLDCR----DKEGRTPLHLAV---NKTSIGCAKVLLESGAD----- 258 (418)
Q Consensus 195 ~~~~~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~----~~~~~t~L~~A~---~~~~~~~v~~Ll~~~~~----- 258 (418)
+..++++||.|+..|+.+.++.|++ .+. .++.. +..|.||||+|+ +.|+.+++++|++.|++
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~--~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~ 79 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKK--RLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR 79 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTC--CTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCC--CcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH
Confidence 3567899999999999996555554 444 44433 367999999999 77999999999998743
Q ss_pred ------CCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccC--------------CCCCCHHHHHHHcCCHHHHHHH
Q 048601 259 ------KEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKD--------------DRGRSCFDVARDKGHIEVLEVL 318 (418)
Q Consensus 259 ------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--------------~~g~t~l~~A~~~~~~~~~~~l 318 (418)
++..+..|.||||+|+..|+.++|++|+++|++++..+ ..|.||||+|+..|+.+++++
T Consensus 80 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~- 158 (260)
T 3jxi_A 80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHY- 158 (260)
T ss_dssp HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHH-
T ss_pred hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHH-
Confidence 44555689999999999999999999999999999988 689999999988887776666
Q ss_pred hcCchHHHHHHcCCHHHHHHHHh---CCCCCCcCCCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCC-------
Q 048601 319 QRGEAVLTAARRGELEGLESLLD---KGASTNYCDQYGLTPLHIAAIKGH---------KHVVLLLIEFGADV------- 379 (418)
Q Consensus 319 ~~~~~~~~a~~~g~~~~~~~Ll~---~g~~~~~~~~~g~t~L~~A~~~g~---------~~~v~~Ll~~ga~~------- 379 (418)
|++ +|++++.+|..|+||||+|+..|+ .+++++|+++|+++
T Consensus 159 --------------------Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~ 218 (260)
T 3jxi_A 159 --------------------LTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLE 218 (260)
T ss_dssp --------------------HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGG
T ss_pred --------------------HHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchh
Confidence 888 899999999999999999999888 79999999999998
Q ss_pred CcCCCCCCcHhHHHHhcCCcceeehhhhccC
Q 048601 380 ECQDNEGHAPLHLAVEGGRVEPLLFIWLKQW 410 (418)
Q Consensus 380 ~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~ 410 (418)
+.+|..|+|||++|++.|+.+++++|+++..
T Consensus 219 ~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~ 249 (260)
T 3jxi_A 219 ALLNNDGLSPLMMAAKTGKIGIFQHIIRREI 249 (260)
T ss_dssp GCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcccCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence 6799999999999999999999999996544
No 53
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=100.00 E-value=5.6e-34 Score=252.69 Aligned_cols=211 Identities=25% Similarity=0.285 Sum_probs=171.0
Q ss_pred cchHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHH
Q 048601 123 VGPFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSEL 202 (418)
Q Consensus 123 ~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L 202 (418)
.|+++||.|+..|+.+.|+.|++ +|++.|.+++......+..|.|||
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~---------------------------------~l~~~~~~~~~~~~~~~~~g~t~L 50 (260)
T 3jxi_A 4 FNRPILFDIVSRGSPDGLEGLLS---------------------------------FLLTHKKRLTDEEFREPSTGKTCL 50 (260)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHH---------------------------------HHHHHTCCTTSGGGSCTTTCCCHH
T ss_pred chHHHHHHHHHhCCHHHHHHHHH---------------------------------HHHhcCCCcchhhhhccCCCCcHH
Confidence 36666666666666665554443 444566666653322446788888
Q ss_pred HHHH---HcCCHHHHHHHHhcccC---------CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-------
Q 048601 203 HVAA---AFGRTEEISSLVRMKEY---------ESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKG------- 263 (418)
Q Consensus 203 ~~A~---~~g~~~~v~~Ll~~~~~---------~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~------- 263 (418)
|+|+ ..|+.+++++|++.+.. ..++..|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 51 ~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~ 130 (260)
T 3jxi_A 51 PKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQP 130 (260)
T ss_dssp HHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSS
T ss_pred HHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCc
Confidence 8888 66888888888876532 2345566689999999999999999999999999999998
Q ss_pred -------CCCccHHHHHHHcCCHHHHHHHHH---cCCCCCccCCCCCCHHHHHHHcCC--HHHHHHHhcCchHHHHHHcC
Q 048601 264 -------KDGKTSLHNAAANGDRRMVEMLIE---MGADPTIKDDRGRSCFDVARDKGH--IEVLEVLQRGEAVLTAARRG 331 (418)
Q Consensus 264 -------~~g~t~L~~A~~~g~~~~v~~Ll~---~g~~~~~~~~~g~t~l~~A~~~~~--~~~~~~l~~~~~~~~a~~~g 331 (418)
..|.||||+|+..|+.+++++|++ +|++++.+|..|+||||+|+..++ .+.++++
T Consensus 131 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~------------- 197 (260)
T 3jxi_A 131 KDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFV------------- 197 (260)
T ss_dssp SCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHH-------------
T ss_pred ccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHH-------------
Confidence 689999999999999999999999 999999999999999999997665 4444432
Q ss_pred CHHHHHHHHhCCCCC-------CcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 048601 332 ELEGLESLLDKGAST-------NYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVE 380 (418)
Q Consensus 332 ~~~~~~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~ 380 (418)
.+++++|+++|+++ +..+..|+||||+|+..|+.++|++|+++|++..
T Consensus 198 -~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~ 252 (260)
T 3jxi_A 198 -TKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA 252 (260)
T ss_dssp -HHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence 46788899999998 6799999999999999999999999999987653
No 54
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=100.00 E-value=1.6e-34 Score=258.05 Aligned_cols=189 Identities=23% Similarity=0.336 Sum_probs=172.2
Q ss_pred chHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCccHHHHHH---
Q 048601 199 WSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGA-DKEAKGKDGKTSLHNAA--- 274 (418)
Q Consensus 199 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~--- 274 (418)
.+++|.|+..|+.+.++.++.......++..|..|.||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+
T Consensus 77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~ 156 (276)
T 4hbd_A 77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALAT 156 (276)
T ss_dssp STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCC
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHH
Confidence 36788899999999999998765544578899999999999999999999999999998 99999999999999999
Q ss_pred --HcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCC
Q 048601 275 --ANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQY 352 (418)
Q Consensus 275 --~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~ 352 (418)
..++.+++++|++.|.+.+..+..|+||||+|+..|+.+++++ |+++|+++|.+|..
T Consensus 157 ~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~---------------------Ll~~gad~n~~d~~ 215 (276)
T 4hbd_A 157 LKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKA---------------------LLACEADVNVQDDD 215 (276)
T ss_dssp CCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHH---------------------HHHTTCCTTCCCTT
T ss_pred hhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHH---------------------HHhCCCCCCCCCCC
Confidence 6688999999999999999999999999999988887776665 88999999999999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhc
Q 048601 353 GLTPLHIAAIKGHKHVVLLLIE-FGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLK 408 (418)
Q Consensus 353 g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~ 408 (418)
|+||||+|+..|+.++|++|++ .|++++.+|..|+|||++|++.|+.+++++|+++
T Consensus 216 G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 272 (276)
T 4hbd_A 216 GSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSR 272 (276)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 9999999999999999999999 8999999999999999999999999999999854
No 55
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=100.00 E-value=1.2e-33 Score=238.79 Aligned_cols=162 Identities=29% Similarity=0.292 Sum_probs=146.9
Q ss_pred ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH
Q 048601 227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVA 306 (418)
Q Consensus 227 ~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A 306 (418)
+.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|
T Consensus 29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 108 (192)
T 2rfm_A 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWS 108 (192)
T ss_dssp TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred hCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence 66788899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCC
Q 048601 307 RDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEG 386 (418)
Q Consensus 307 ~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g 386 (418)
+..|+.+++++ |+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|
T Consensus 109 ~~~~~~~~v~~---------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g 167 (192)
T 2rfm_A 109 IIFGYSEMSYF---------------------LLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTG 167 (192)
T ss_dssp HHHTCHHHHHH---------------------HHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTS
T ss_pred HHcCCHHHHHH---------------------HHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence 88777666655 888999999999999999999999999999999999999999999999
Q ss_pred CcHhHHHHhcCCcceeehhhhcc
Q 048601 387 HAPLHLAVEGGRVEPLLFIWLKQ 409 (418)
Q Consensus 387 ~t~l~~A~~~g~~~~v~~Ll~~~ 409 (418)
.|||++|+..|+.+++++|++.+
T Consensus 168 ~t~l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 168 LTAEASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp CBHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHhCcHHHHHHHHhcc
Confidence 99999999999999999998653
No 56
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=100.00 E-value=5.2e-33 Score=230.43 Aligned_cols=170 Identities=25% Similarity=0.308 Sum_probs=149.6
Q ss_pred CchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcC
Q 048601 198 GWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANG 277 (418)
Q Consensus 198 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g 277 (418)
+.+|||.|+..|+.+++++|++.+. ..++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGD-NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGG 80 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCS-GGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCc-ccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCC
Confidence 3589999999999999999998765 347888999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHH
Q 048601 278 DRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPL 357 (418)
Q Consensus 278 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L 357 (418)
+.+++++|+++|++++.++..|.||||+|+..|+.+++++ |+++|++++.++..|.|||
T Consensus 81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~ga~~~~~~~~g~t~l 139 (172)
T 3v30_A 81 YTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEA---------------------LLARGADLTTEADSGYTPM 139 (172)
T ss_dssp CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH---------------------HHHTTCCTTCCCTTSCCHH
T ss_pred CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH---------------------HHHcCCCccccCCCCCCHH
Confidence 9999999999999999999999999999988877776665 8899999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcH
Q 048601 358 HIAAIKGHKHVVLLLIEFGADVECQDNEGHAP 389 (418)
Q Consensus 358 ~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~ 389 (418)
|+|+..|+.+++++|+++|+++..++..|.||
T Consensus 140 ~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 140 DLAVALGYRKVQQVIENHILKLFQSNLVPADP 171 (172)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred HHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence 99999999999999999999998888888776
No 57
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=2.9e-35 Score=269.47 Aligned_cols=261 Identities=15% Similarity=0.091 Sum_probs=188.9
Q ss_pred CCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccc-------------cCCCCch
Q 048601 134 NGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERV-------------KTKDGWS 200 (418)
Q Consensus 134 ~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~-------------~~~~~~t 200 (418)
....++|++|+++|+++.. ....+.++++ |+.+++++|+++|++++..... ......+
T Consensus 29 ~~~~dlv~~ll~~ga~i~~--~~~~g~~~~~-------g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 99 (327)
T 1sw6_A 29 TFTHDLTSDFLSSPLKIMK--ALPSPVVNDN-------EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQ 99 (327)
T ss_dssp ECCTTCCCSTTTSSCCCEE--CBCCCCCCCH-------HHHHHHHHHHHHHHC---------------------------
T ss_pred hhcCchHHHHhhCCccccc--CCCCCCcccC-------chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccc
Confidence 3455779999999988744 3345666653 7999999999999876542110 0011122
Q ss_pred HHHHHHHcCCHHHHHHHHhcccCCCCcc-CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCC-
Q 048601 201 ELHVAAAFGRTEEISSLVRMKEYESLDC-RDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGD- 278 (418)
Q Consensus 201 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~- 278 (418)
.+|.|+..+..+++++|++.+. +++. +|..|.||||+|+..|+.++|++|+++|++++.++..|.||||+|+..|+
T Consensus 100 ~~~~a~~~~~~~~~~~l~~~g~--dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~ 177 (327)
T 1sw6_A 100 QQHVSFDSLLQEVNDAFPNTQL--NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNN 177 (327)
T ss_dssp ----CHHHHHHHHHHHCTTSCC--CSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHH
T ss_pred hhHHHHHhhHHHHHHHHHhcCC--CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhccc
Confidence 3577888888888888886554 7888 89999999999999999999999999999999999999999999999998
Q ss_pred --HHHHHHHHHcC-CCCCccCCCCCCHHHHHHH----cCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCC
Q 048601 279 --RRMVEMLIEMG-ADPTIKDDRGRSCFDVARD----KGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQ 351 (418)
Q Consensus 279 --~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~----~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~ 351 (418)
.++++.|++.+ ++++.++..|+||||+|+. .|+.+++++|++......... +...+...+.+.|++++..+.
T Consensus 178 ~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~-~~~~i~~~~~~~g~~~~~~~~ 256 (327)
T 1sw6_A 178 YDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKK-QNRPIQSGTNEKESKPNDKNG 256 (327)
T ss_dssp HHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHG-GGCCEEEC-------------
T ss_pred ccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcc-cchHHHhhhhcccCCcccccc
Confidence 78888888887 7899999999999999999 899999999865443322111 111111223445899999999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhccCCccccc
Q 048601 352 YGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQWGTMVSH 416 (418)
Q Consensus 352 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~g~~~~~ 416 (418)
.|.||||+|+. +++|+++ +++.+|..|+||||+|++.|+.++|++|+ +.|++++.
T Consensus 257 ~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll--~~Gad~~~ 311 (327)
T 1sw6_A 257 ERKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALL--DYGADPFI 311 (327)
T ss_dssp ---CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHH--HTTCCTTC
T ss_pred cCCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHH--HcCCCCcc
Confidence 99999999985 9999999 58889999999999999999999999999 56777653
No 58
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=100.00 E-value=1.2e-32 Score=227.59 Aligned_cols=157 Identities=34% Similarity=0.479 Sum_probs=125.6
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Q 048601 230 DKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDK 309 (418)
Q Consensus 230 ~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 309 (418)
...+.++|+.|++.|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 90 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF 90 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence 44566788888888888888888888888888888888888888888888888888888888888888888888887777
Q ss_pred CCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcH
Q 048601 310 GHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAP 389 (418)
Q Consensus 310 ~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~ 389 (418)
|+.+++++ |+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus 91 ~~~~~~~~---------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 149 (169)
T 2y1l_E 91 GHLEIVEV---------------------LLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTA 149 (169)
T ss_dssp TCHHHHHH---------------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCHHHHHH---------------------HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 66665554 777788888888888888888888888888888888888888888888888
Q ss_pred hHHHHhcCCcceeehhhh
Q 048601 390 LHLAVEGGRVEPLLFIWL 407 (418)
Q Consensus 390 l~~A~~~g~~~~v~~Ll~ 407 (418)
|++|++.|+.+++++|++
T Consensus 150 l~~A~~~~~~~~~~~L~~ 167 (169)
T 2y1l_E 150 FDISIDNGNEDLAEILQK 167 (169)
T ss_dssp HHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHH
Confidence 888888888888888873
No 59
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=100.00 E-value=1.4e-32 Score=226.71 Aligned_cols=153 Identities=29% Similarity=0.345 Sum_probs=90.6
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Q 048601 233 GRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHI 312 (418)
Q Consensus 233 ~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 312 (418)
|.||||.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 82 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 82 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred CcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH
Confidence 45556666666666666666655555555555566666666666666666666666655555555555665555555444
Q ss_pred HHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHH
Q 048601 313 EVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHL 392 (418)
Q Consensus 313 ~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~ 392 (418)
+++++ |+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++
T Consensus 83 ~~v~~---------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~ 141 (167)
T 3v31_A 83 DIVKM---------------------LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDL 141 (167)
T ss_dssp HHHHH---------------------HHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred HHHHH---------------------HHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence 44333 555555666556666666666666666666666666666666666666666666
Q ss_pred HHhcCCcceeehhh
Q 048601 393 AVEGGRVEPLLFIW 406 (418)
Q Consensus 393 A~~~g~~~~v~~Ll 406 (418)
|+..|+.+++++|+
T Consensus 142 A~~~~~~~~~~~L~ 155 (167)
T 3v31_A 142 AVALGYRSVQQVIE 155 (167)
T ss_dssp HHHHTCHHHHHHHH
T ss_pred HHHcCcHHHHHHHH
Confidence 66666666666665
No 60
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.1e-35 Score=255.95 Aligned_cols=203 Identities=20% Similarity=0.159 Sum_probs=170.8
Q ss_pred HHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 048601 177 VSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESG 256 (418)
Q Consensus 177 v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~ 256 (418)
++.|++.|++++... ..+..+.||||.|+..|+.+++++|++.+. +++.+|..|.||||+|+..|+.+++++|+++|
T Consensus 1 v~~ll~~~~~~~~~~-~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~--~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g 77 (229)
T 2vge_A 1 MRSVLRKAGSPRKAR-RARLNPLVLLLDAALTGELEVVQQAVKEMN--DPSQPNEEGITALHNAICGANYSIVDFLITAG 77 (229)
T ss_dssp ---------CCCCCC-CTTSCHHHHHHHHHHHTCHHHHHHHHHHSS--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CeehhccCCCCcccc-ccccchhHHHHHHHHcCCHHHHHHHHhcCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 467888888876522 245667889999999999999999998665 77889999999999999999999999999999
Q ss_pred CCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCCCHHHHH--HHcCCHHHHHHHhcCchHHHHHHcCCH
Q 048601 257 ADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKD-DRGRSCFDVA--RDKGHIEVLEVLQRGEAVLTAARRGEL 333 (418)
Q Consensus 257 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A--~~~~~~~~~~~l~~~~~~~~a~~~g~~ 333 (418)
++++..|..|.||||+|+..|+.+++++|+++|++++..+ ..|+||||+| +..|+.+++++
T Consensus 78 a~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~---------------- 141 (229)
T 2vge_A 78 ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATY---------------- 141 (229)
T ss_dssp CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHH----------------
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHH----------------
Confidence 9999999999999999999999999999999999999986 6999999998 77666665555
Q ss_pred HHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC--CCcCCCCCCcHhHHHHhcCCcceeehhh
Q 048601 334 EGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGAD--VECQDNEGHAPLHLAVEGGRVEPLLFIW 406 (418)
Q Consensus 334 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~--~~~~d~~g~t~l~~A~~~g~~~~v~~Ll 406 (418)
|+++|++++..+..|.||++.++..+ .+++|++.|++ ++.+|..|+|||++|+.+|+.++|+-++
T Consensus 142 -----Ll~~ga~~~~~~~~~~~~l~~~~~~~---~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~ 208 (229)
T 2vge_A 142 -----LADVEQSMGLMNSGAVYALWDYSAEF---GDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY 208 (229)
T ss_dssp -----HHHHHHHTTTSGGGEEEESSCBCCSS---TTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred -----HHHcCCCcccccCCchHHHHHHhhcc---ccccCccccccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence 89999999999999999998655443 33688999998 7789999999999999999999998654
No 61
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=100.00 E-value=4.4e-32 Score=229.09 Aligned_cols=160 Identities=31% Similarity=0.382 Sum_probs=151.2
Q ss_pred cCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHH
Q 048601 194 KTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNA 273 (418)
Q Consensus 194 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A 273 (418)
+|..|.||||+|+..|+.+++++|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus 31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 108 (192)
T 2rfm_A 31 RDSYNRTPLMVACMLGMENAIDKLVENFD--KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWS 108 (192)
T ss_dssp CCTTCCCHHHHHHHHTCGGGHHHHHHHHC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHhcc--ccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence 78899999999999999999999998765 7788899999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCC
Q 048601 274 AANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYG 353 (418)
Q Consensus 274 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g 353 (418)
+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++ |+++|++++.++..|
T Consensus 109 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~ga~~~~~~~~g 167 (192)
T 2rfm_A 109 IIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKK---------------------LLELGADISARDLTG 167 (192)
T ss_dssp HHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHH---------------------HHHTTCCTTCBCTTS
T ss_pred HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH---------------------HHHCCCCCCCcCCCC
Confidence 99999999999999999999999999999999988887776665 889999999999999
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcC
Q 048601 354 LTPLHIAAIKGHKHVVLLLIEFG 376 (418)
Q Consensus 354 ~t~L~~A~~~g~~~~v~~Ll~~g 376 (418)
.|||++|+..|+.+++++|+++|
T Consensus 168 ~t~l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 168 LTAEASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp CBHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHhCcHHHHHHHHhcc
Confidence 99999999999999999999875
No 62
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=100.00 E-value=1.4e-32 Score=225.41 Aligned_cols=156 Identities=31% Similarity=0.405 Sum_probs=83.3
Q ss_pred CchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcC
Q 048601 198 GWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANG 277 (418)
Q Consensus 198 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g 277 (418)
..|||+.|+..|+.+++++|++.+. +++..+..|.||||+|+. |+.+++++|+++|++++.++..|.||||+|+..|
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~--~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 81 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNV--NVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG 81 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCC--CTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCC--CccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 3455555555555555555554332 444555555555555555 5555555555555555555555555555555555
Q ss_pred CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCC-CCcCCCCCCcH
Q 048601 278 DRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAS-TNYCDQYGLTP 356 (418)
Q Consensus 278 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~-~~~~~~~g~t~ 356 (418)
+.+++++|+++|++++.++..|.||||+|+..|+.+++++ |+++|++ ++..+..|.||
T Consensus 82 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~g~~~~~~~~~~g~t~ 140 (162)
T 1ihb_A 82 FLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF---------------------LVKHTASNVGHRNHKGDTA 140 (162)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH---------------------HHHHSCCCTTCCCTTSCCH
T ss_pred CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHH---------------------HHHccCCCCCCcCCCCCcH
Confidence 5555555555555555555555555555554444443333 4455544 35555555555
Q ss_pred HHHHHHcCCHHHHHHHHHcCC
Q 048601 357 LHIAAIKGHKHVVLLLIEFGA 377 (418)
Q Consensus 357 L~~A~~~g~~~~v~~Ll~~ga 377 (418)
||+|+.+|+.+++++|+++||
T Consensus 141 l~~A~~~~~~~~~~~Ll~~GA 161 (162)
T 1ihb_A 141 CDLARLYGRNEVVSLMQANGA 161 (162)
T ss_dssp HHHHHHTTCHHHHHHHHHTC-
T ss_pred HHHHHHcCCHHHHHHHHHhCC
Confidence 555555555555555555554
No 63
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=100.00 E-value=1.5e-35 Score=274.07 Aligned_cols=261 Identities=12% Similarity=0.106 Sum_probs=179.4
Q ss_pred ccchHHHHHHHHCCCHHHHHHHHhcchhhh-hcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCch
Q 048601 122 FVGPFLLRHAVSNGDFNAVKSILKRQKMIL-AGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWS 200 (418)
Q Consensus 122 ~~g~~~L~~A~~~g~~~~vk~Ll~~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t 200 (418)
..+.||||+|+..|+.++|++|+++++... .......+.+||++|+. .|+.++|++|+++|+++.... ..+.+ .|
T Consensus 90 ~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~--~G~~eiv~~Ll~~gad~~~~~-i~~~~-~T 165 (376)
T 2aja_A 90 IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAE--NGHLHVLNRLCELAPTEIMAM-IQAEN-YH 165 (376)
T ss_dssp CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHH--TTCHHHHHHHHHSCTTTHHHH-HSHHH-HH
T ss_pred CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHH--cCCHHHHHHHHhCCCCccccc-cCCCC-CC
Confidence 346799999999999999999999886211 01123467789999999 899999999999997632100 02222 89
Q ss_pred HHHHHHHcCCHHHHHHHHhcccCCCCcc--CCCCCCcHHHHHH-HcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcC
Q 048601 201 ELHVAAAFGRTEEISSLVRMKEYESLDC--RDKEGRTPLHLAV-NKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANG 277 (418)
Q Consensus 201 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~--~~~~~~t~L~~A~-~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g 277 (418)
|||+|+..|+.+++++|++.+. +++. .|..|.||||+|+ ..|+.+++++|+++|+ .|.|||++|+..|
T Consensus 166 pLh~Aa~~G~~eiv~~Ll~~ga--~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g 236 (376)
T 2aja_A 166 AFRLAAENGHLHVLNRLCELAP--TEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYG 236 (376)
T ss_dssp HHHHHHHTTCHHHHHHHHHSCG--GGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTT
T ss_pred HHHHHHHCCCHHHHHHHHHcCC--ccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCC
Confidence 9999999999999999998765 4444 6778899999999 9999999999998774 3789999999999
Q ss_pred CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcC------chHHHHHHcCCHHHHHHHHhC---------
Q 048601 278 DRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRG------EAVLTAARRGELEGLESLLDK--------- 342 (418)
Q Consensus 278 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~------~~~~~a~~~g~~~~~~~Ll~~--------- 342 (418)
+.+++++|+++|++++..+ ++++.|+..|+.++++..... ..+......+..+.+++|++.
T Consensus 237 ~~evv~lL~~~ga~~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~ 312 (376)
T 2aja_A 237 EKYVNPFIARHVNRLKEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPT 312 (376)
T ss_dssp TTTHHHHHHHHHHHHHHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSC
T ss_pred CHHHHHHHHhcCccccccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhcc
Confidence 9999999999998876554 367778888887754321100 001112223456778888764
Q ss_pred CCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhh
Q 048601 343 GASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIW 406 (418)
Q Consensus 343 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll 406 (418)
|++++ .+.||||+|+..|+.++|++|++.| ..++..+.|++++|-.+|+.++++.=+
T Consensus 313 g~~~n----~~~~~L~~A~~~g~~e~v~lLl~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (376)
T 2aja_A 313 ATIPG----DANELLRLALRLGNQGACALLLSIP---SVLALTKANNYYINETGGRLDLRAVAL 369 (376)
T ss_dssp CSSTT----CCCHHHHHHHHHTCTTHHHHHTTSH---HHHHSCC--------------------
T ss_pred CCCCC----CccHHHHHHHHcCcHHHHHHHHcCh---HHHHHHHHhccccccccccccHHHHHH
Confidence 44433 4679999999999999999999976 446788999999999999999988654
No 64
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=100.00 E-value=7.4e-32 Score=221.16 Aligned_cols=157 Identities=28% Similarity=0.380 Sum_probs=147.6
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Q 048601 232 EGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGH 311 (418)
Q Consensus 232 ~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 311 (418)
...|||+.|+..|+.+++++|+++|++++..+..|.||||+|+. |+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 82 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF 82 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 45689999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCcHh
Q 048601 312 IEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGAD-VECQDNEGHAPL 390 (418)
Q Consensus 312 ~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~t~l 390 (418)
.+++++ |+++|++++.++..|.||||+|+..|+.+++++|+++|++ ++.+|..|.|||
T Consensus 83 ~~~v~~---------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l 141 (162)
T 1ihb_A 83 LDTLQT---------------------LLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141 (162)
T ss_dssp HHHHHH---------------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHH
T ss_pred HHHHHH---------------------HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHH
Confidence 888776 8889999999999999999999999999999999999998 599999999999
Q ss_pred HHHHhcCCcceeehhhhccCCc
Q 048601 391 HLAVEGGRVEPLLFIWLKQWGT 412 (418)
Q Consensus 391 ~~A~~~g~~~~v~~Ll~~~~g~ 412 (418)
++|+..|+.+++++|+ +.|+
T Consensus 142 ~~A~~~~~~~~~~~Ll--~~GA 161 (162)
T 1ihb_A 142 DLARLYGRNEVVSLMQ--ANGA 161 (162)
T ss_dssp HHHHHTTCHHHHHHHH--HTC-
T ss_pred HHHHHcCCHHHHHHHH--HhCC
Confidence 9999999999999999 4554
No 65
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=100.00 E-value=4.3e-32 Score=220.32 Aligned_cols=150 Identities=28% Similarity=0.399 Sum_probs=112.9
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHH
Q 048601 234 RTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIE 313 (418)
Q Consensus 234 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 313 (418)
.|+|+.|++.|+.+++++|+++|++++ .+..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 81 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN 81 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHH
Confidence 467777777777777777777777665 4666777777777777777777777777777777777777777776666555
Q ss_pred HHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHH
Q 048601 314 VLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLA 393 (418)
Q Consensus 314 ~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A 393 (418)
++++ |+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|
T Consensus 82 ~v~~---------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A 140 (153)
T 1awc_B 82 IVEV---------------------LLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDIS 140 (153)
T ss_dssp HHHH---------------------HHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHH---------------------HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHH
Confidence 5444 6777777777777788888888888888888888888888888888888888888
Q ss_pred HhcCCcceeehh
Q 048601 394 VEGGRVEPLLFI 405 (418)
Q Consensus 394 ~~~g~~~~v~~L 405 (418)
+.+|+.+++++|
T Consensus 141 ~~~~~~~i~~~L 152 (153)
T 1awc_B 141 IDNGNEDLAEIL 152 (153)
T ss_dssp HHTTCHHHHHHH
T ss_pred HHcCCHHHHHHh
Confidence 888888877776
No 66
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=100.00 E-value=2.1e-31 Score=220.07 Aligned_cols=160 Identities=34% Similarity=0.475 Sum_probs=142.4
Q ss_pred cCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHH
Q 048601 194 KTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNA 273 (418)
Q Consensus 194 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A 273 (418)
....+.++|+.|+..|+.+++++|++.+. +++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 87 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMANGA--DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLA 87 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHHCCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence 34456789999999999999999998754 6788899999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCC
Q 048601 274 AANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYG 353 (418)
Q Consensus 274 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g 353 (418)
+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++ |+++|++++.++..|
T Consensus 88 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~g~~~~~~~~~g 146 (169)
T 2y1l_E 88 ALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEV---------------------LLKNGADVNAQDKFG 146 (169)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH---------------------HHHTTCCTTCCCTTS
T ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH---------------------HHHcCCCCCCcCCCC
Confidence 99999999999999999999999999999999888877776655 888999999999999
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcC
Q 048601 354 LTPLHIAAIKGHKHVVLLLIEFG 376 (418)
Q Consensus 354 ~t~L~~A~~~g~~~~v~~Ll~~g 376 (418)
.|||++|+.+|+.+++++|+++|
T Consensus 147 ~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 147 KTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp CCHHHHHHHTTCHHHHHHHHTC-
T ss_pred CCHHHHHHHhCCHHHHHHHHHcC
Confidence 99999999999999999999876
No 67
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.98 E-value=9.6e-32 Score=221.67 Aligned_cols=160 Identities=24% Similarity=0.347 Sum_probs=149.6
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHc
Q 048601 197 DGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAAN 276 (418)
Q Consensus 197 ~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~ 276 (418)
.|.||||.|+..|+.+++++|++.+. +++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 79 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQEN--VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSK 79 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSS--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCC--CcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc
Confidence 46799999999999999999998764 6888999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcH
Q 048601 277 GDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTP 356 (418)
Q Consensus 277 g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~ 356 (418)
|+.+++++|+++|++++.++..|.||||+|+..|+.+++++ |+++|++++.++..|.||
T Consensus 80 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~g~~~~~~~~~g~t~ 138 (167)
T 3v31_A 80 GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKM---------------------LLESGADPTIETDSGYNS 138 (167)
T ss_dssp TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHH---------------------HHHTTCCTTCCCTTSCCH
T ss_pred CCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHH---------------------HHHcCCCCCCcCCCCCCH
Confidence 99999999999999999999999999999998887776665 889999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCC
Q 048601 357 LHIAAIKGHKHVVLLLIEFGADV 379 (418)
Q Consensus 357 L~~A~~~g~~~~v~~Ll~~ga~~ 379 (418)
|++|+..|+.+++++|+++++++
T Consensus 139 l~~A~~~~~~~~~~~L~~~~~~~ 161 (167)
T 3v31_A 139 MDLAVALGYRSVQQVIESHLLKL 161 (167)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHH
Confidence 99999999999999999988654
No 68
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.98 E-value=2.7e-32 Score=243.65 Aligned_cols=189 Identities=21% Similarity=0.277 Sum_probs=170.4
Q ss_pred hhhHHHHHHHhhCCHHHHHHHHHcCCC--CcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHH
Q 048601 160 ESLYRVATELAANSEDMVSLLLRAGLS--IEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPL 237 (418)
Q Consensus 160 ~~~l~~a~~~~~~~~~~v~~Ll~~g~~--~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L 237 (418)
.++++.|+. .|+.+.++.+++.+.+ ++. .|..|.||||+|+..|+.+++++|++.+. .+++..+..|.|||
T Consensus 77 ~~~l~~a~~--~~~~~~~~~l~~~~~~~~~n~----~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~g~tpL 149 (276)
T 4hbd_A 77 RSDAHPELV--RRHLVTFRAMSARLLDYVVNI----ADSNGNTALHYSVSHANFPVVQQLLDSGV-CKVDKQNRAGYSPI 149 (276)
T ss_dssp STTCCHHHH--HHHHHHHHHHCHHHHHHHHTC----CCTTSCCHHHHHHHTTCHHHHHHHHHTSC-CCTTCCCTTSCCHH
T ss_pred ccCCCHHHH--HHHHHHHHHHHHHHHhhcCcC----CCCCCCCHHHHHHHCCCHHHHHHHHHCCC-CcCCCCCCCCCCHH
Confidence 345566666 6788899988887665 444 89999999999999999999999998764 47788999999999
Q ss_pred HHHH-----HcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Q 048601 238 HLAV-----NKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHI 312 (418)
Q Consensus 238 ~~A~-----~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 312 (418)
|+|+ ..++.+++++|++.|...+..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus 150 ~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~ 229 (276)
T 4hbd_A 150 MLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHK 229 (276)
T ss_dssp HHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred HHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCH
Confidence 9999 67889999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred HHHHHHhcCchHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 048601 313 EVLEVLQRGEAVLTAARRGELEGLESLLD-KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFG 376 (418)
Q Consensus 313 ~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 376 (418)
+++++ |++ .|++++.+|..|.||||+|+.+|+.+++++|++++
T Consensus 230 ~iv~~---------------------Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 230 EIAGL---------------------LLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HHHHH---------------------HHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHH---------------------HHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 77666 787 89999999999999999999999999999999975
No 69
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.98 E-value=4.3e-32 Score=224.90 Aligned_cols=156 Identities=28% Similarity=0.344 Sum_probs=146.4
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Q 048601 233 GRTPLHLAVNKTSIGCAKVLLESGAD-KEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGH 311 (418)
Q Consensus 233 ~~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 311 (418)
+.||||.|+..|+.+++++|++.+.. ++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence 46899999999999999999999887 88899999999999999999999999999999999999999999999988887
Q ss_pred HHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhH
Q 048601 312 IEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLH 391 (418)
Q Consensus 312 ~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~ 391 (418)
.+++++ |+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.|||+
T Consensus 82 ~~~v~~---------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~ 140 (172)
T 3v30_A 82 TDIVGL---------------------LLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMD 140 (172)
T ss_dssp HHHHHH---------------------HHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred HHHHHH---------------------HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence 776665 88999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcceeehhhhcc
Q 048601 392 LAVEGGRVEPLLFIWLKQ 409 (418)
Q Consensus 392 ~A~~~g~~~~v~~Ll~~~ 409 (418)
+|+..|+.+++++|+++.
T Consensus 141 ~A~~~~~~~~~~~L~~~~ 158 (172)
T 3v30_A 141 LAVALGYRKVQQVIENHI 158 (172)
T ss_dssp HHHHHTCHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHH
Confidence 999999999999999543
No 70
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.98 E-value=1.6e-31 Score=222.89 Aligned_cols=168 Identities=22% Similarity=0.310 Sum_probs=151.7
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHc
Q 048601 197 DGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAAN 276 (418)
Q Consensus 197 ~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~ 276 (418)
.+.++|+.|+..|+.+++++|++..+ .+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTE-NDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH 82 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTT-SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCc-ccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 45689999999999999999998654 46788999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcH
Q 048601 277 GDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTP 356 (418)
Q Consensus 277 g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~ 356 (418)
|+.+++++|+++|++++.++..|.||||+|+..|+.+++++ |+++|++++..+..|.||
T Consensus 83 ~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~ga~~~~~~~~g~tp 141 (179)
T 3f6q_A 83 GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAED---------------------LVANGALVSICNKYGEMP 141 (179)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH---------------------HHHTTCCSSBCCTTSCCG
T ss_pred CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHH---------------------HHHCCCCcchhccCCCCc
Confidence 99999999999999999999999999999988887776665 889999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCcCCCCC
Q 048601 357 LHIAAIKGHKHVVLLLIEFGADVECQDNEG 386 (418)
Q Consensus 357 L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g 386 (418)
|++|+..++.+++++|+++|++++..+..+
T Consensus 142 l~~A~~~~~~~~~~~L~~~g~~~~~~~~~~ 171 (179)
T 3f6q_A 142 VDKAKAPLRELLRERAEKMGQNLNRIPYKD 171 (179)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhhcCcccCCccc
Confidence 999999999999999999999998766554
No 71
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.97 E-value=1.4e-31 Score=223.26 Aligned_cols=163 Identities=23% Similarity=0.261 Sum_probs=149.9
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Q 048601 231 KEGRTPLHLAVNKTSIGCAKVLLES-GADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDK 309 (418)
Q Consensus 231 ~~~~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 309 (418)
..+.++|+.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH 82 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 4578999999999999999999998 678999999999999999999999999999999999999999999999999988
Q ss_pred CCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcH
Q 048601 310 GHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAP 389 (418)
Q Consensus 310 ~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~ 389 (418)
|+.+++++ |+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus 83 ~~~~~v~~---------------------Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tp 141 (179)
T 3f6q_A 83 GHRDIVQK---------------------LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMP 141 (179)
T ss_dssp TCHHHHHH---------------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCG
T ss_pred CCHHHHHH---------------------HHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCc
Confidence 87776665 899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhcCCcceeehhhhccCCccccc
Q 048601 390 LHLAVEGGRVEPLLFIWLKQWGTMVSH 416 (418)
Q Consensus 390 l~~A~~~g~~~~v~~Ll~~~~g~~~~~ 416 (418)
|++|+..++.+++++|+ +.|++++.
T Consensus 142 l~~A~~~~~~~~~~~L~--~~g~~~~~ 166 (179)
T 3f6q_A 142 VDKAKAPLRELLRERAE--KMGQNLNR 166 (179)
T ss_dssp GGGSCHHHHHHHHHHHH--HTTCCCSC
T ss_pred HHHHHHHHHHHHHHHHH--HhhcCccc
Confidence 99999999999999999 66666553
No 72
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.97 E-value=2.9e-31 Score=218.34 Aligned_cols=161 Identities=29% Similarity=0.364 Sum_probs=109.3
Q ss_pred cCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHH
Q 048601 194 KTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNA 273 (418)
Q Consensus 194 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A 273 (418)
.+..+.+||+.|+..|+.+++++|++... .+.+..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 82 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNA 82 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTT-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCC-CCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHH
Confidence 45556777777777777777777776443 45556666677777777777777777777777777777777777777777
Q ss_pred HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCC
Q 048601 274 AANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYG 353 (418)
Q Consensus 274 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g 353 (418)
+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++ |+++|++++.++..|
T Consensus 83 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~ga~~~~~~~~g 141 (165)
T 3twr_A 83 CSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKL---------------------LLQHGADPTKKNRDG 141 (165)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH---------------------HHHTTCCTTCCCTTS
T ss_pred HHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHH---------------------HHHcCCCCcccCCCC
Confidence 77777777777777777777666666666666666555554444 566666666666666
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCC
Q 048601 354 LTPLHIAAIKGHKHVVLLLIEFGA 377 (418)
Q Consensus 354 ~t~L~~A~~~g~~~~v~~Ll~~ga 377 (418)
.||||+|+. |+.+++++|+++|+
T Consensus 142 ~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 142 NTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp CCTGGGSCT-TCHHHHHHHHTC--
T ss_pred CChhHhHhc-CChHHHHHHhhccc
Confidence 666666554 66666666666654
No 73
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.97 E-value=1.7e-31 Score=219.69 Aligned_cols=158 Identities=30% Similarity=0.393 Sum_probs=146.0
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Q 048601 229 RDKEGRTPLHLAVNKTSIGCAKVLLE-SGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVAR 307 (418)
Q Consensus 229 ~~~~~~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 307 (418)
.+..+.|||+.|++.|+.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 83 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC 83 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence 46778999999999999999999998 46677888889999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCC
Q 048601 308 DKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH 387 (418)
Q Consensus 308 ~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~ 387 (418)
..|+.+++++ |+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|.
T Consensus 84 ~~~~~~~v~~---------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~ 142 (165)
T 3twr_A 84 SYGHYEVAEL---------------------LVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN 142 (165)
T ss_dssp HTTCHHHHHH---------------------HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred HcCcHHHHHH---------------------HHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Confidence 8887776665 8899999999999999999999999999999999999999999999999
Q ss_pred cHhHHHHhcCCcceeehhhhc
Q 048601 388 APLHLAVEGGRVEPLLFIWLK 408 (418)
Q Consensus 388 t~l~~A~~~g~~~~v~~Ll~~ 408 (418)
|||++|++ |+.+++++|+.+
T Consensus 143 t~l~~a~~-~~~~i~~~L~~~ 162 (165)
T 3twr_A 143 TPLDLVKD-GDTDIQDLLRGD 162 (165)
T ss_dssp CTGGGSCT-TCHHHHHHHHTC
T ss_pred ChhHhHhc-CChHHHHHHhhc
Confidence 99999877 899999999943
No 74
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.97 E-value=5.5e-31 Score=214.53 Aligned_cols=152 Identities=30% Similarity=0.407 Sum_probs=77.5
Q ss_pred chHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCC
Q 048601 199 WSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGD 278 (418)
Q Consensus 199 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~ 278 (418)
.|||+.|+..|+.+++++|++. ...+++..+..|.||||+ +..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 80 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF 80 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred chHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence 3555555555555555555554 223445555555555555 55555555555555555555555555555555555555
Q ss_pred HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHH
Q 048601 279 RRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLH 358 (418)
Q Consensus 279 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~ 358 (418)
.+++++|+++|++++.++..|.||||+|+..|+.+++++ |+++ ++++.++..|.||||
T Consensus 81 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~-~~~~~~~~~g~t~l~ 138 (156)
T 1bd8_A 81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF---------------------LAAE-SDLHRRDARGLTPLE 138 (156)
T ss_dssp HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHH---------------------HHTT-SCTTCCCTTSCCHHH
T ss_pred HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHH---------------------HHhc-cCCCCcCCCCCCHHH
Confidence 555555555555555554444444444444444333333 3333 444444444444444
Q ss_pred HHHHcCCHHHHHHHHH
Q 048601 359 IAAIKGHKHVVLLLIE 374 (418)
Q Consensus 359 ~A~~~g~~~~v~~Ll~ 374 (418)
+|+..|+.+++++|++
T Consensus 139 ~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 139 LALQRGAQDLVDILQG 154 (156)
T ss_dssp HHHHSCCHHHHHHHHT
T ss_pred HHHHcCcHHHHHHHHh
Confidence 4444444444444443
No 75
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.97 E-value=2.4e-30 Score=210.01 Aligned_cols=150 Identities=30% Similarity=0.440 Sum_probs=122.0
Q ss_pred chHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCC
Q 048601 199 WSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGD 278 (418)
Q Consensus 199 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~ 278 (418)
.++|+.|+..|+.+++++|++.+. +++ .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~--~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 79 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGA--PFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH 79 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTC--CCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCC--CCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCh
Confidence 478888888888888888887655 333 46778888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHH
Q 048601 279 RRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLH 358 (418)
Q Consensus 279 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~ 358 (418)
.+++++|+++|++++.++..|.||||+|+..|+.+++++ |+++|++++.++..|.||||
T Consensus 80 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~ga~~~~~~~~g~t~l~ 138 (153)
T 1awc_B 80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVEL---------------------LIKYGADVHTQSKFCKTAFD 138 (153)
T ss_dssp HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH---------------------HHHTTCCTTCCCTTSCCHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH---------------------HHHcCCCccccCCCCCCHHH
Confidence 888888888888888888888888888877776665555 77888888888888888888
Q ss_pred HHHHcCCHHHHHHH
Q 048601 359 IAAIKGHKHVVLLL 372 (418)
Q Consensus 359 ~A~~~g~~~~v~~L 372 (418)
+|+.+|+.+++++|
T Consensus 139 ~A~~~~~~~i~~~L 152 (153)
T 1awc_B 139 ISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHh
Confidence 88888888888876
No 76
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.97 E-value=2e-30 Score=211.24 Aligned_cols=153 Identities=28% Similarity=0.402 Sum_probs=144.5
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Q 048601 233 GRTPLHLAVNKTSIGCAKVLLES-GADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGH 311 (418)
Q Consensus 233 ~~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 311 (418)
+.|||+.|+..|+.+++++|++. +.+++..+..|.||||+ +..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 80 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF 80 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence 46899999999999999999998 44899999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhH
Q 048601 312 IEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLH 391 (418)
Q Consensus 312 ~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~ 391 (418)
.+++++ |+++|++++.++..|+||||+|+..|+.+++++|+++ ++++.+|..|.|||+
T Consensus 81 ~~~v~~---------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~ 138 (156)
T 1bd8_A 81 LDTLKV---------------------LVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLE 138 (156)
T ss_dssp HHHHHH---------------------HHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHH
T ss_pred HHHHHH---------------------HHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHH
Confidence 888776 8899999999999999999999999999999999999 999999999999999
Q ss_pred HHHhcCCcceeehhhhc
Q 048601 392 LAVEGGRVEPLLFIWLK 408 (418)
Q Consensus 392 ~A~~~g~~~~v~~Ll~~ 408 (418)
+|++.|+.+++++|+++
T Consensus 139 ~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 139 LALQRGAQDLVDILQGH 155 (156)
T ss_dssp HHHHSCCHHHHHHHHTT
T ss_pred HHHHcCcHHHHHHHHhh
Confidence 99999999999999853
No 77
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.97 E-value=1.3e-31 Score=234.29 Aligned_cols=187 Identities=16% Similarity=0.174 Sum_probs=136.8
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHH
Q 048601 196 KDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAA 275 (418)
Q Consensus 196 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~ 275 (418)
..|.||||.|+..|+.++++.|++++. +++. +..|.||||.|+..|+.+++++|++.|++++.++..|.||||+|+.
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~--~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~ 79 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGM--RVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVC 79 (239)
T ss_dssp -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccCC--Cccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 357899999999999999999998776 4443 3678999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCC-
Q 048601 276 NGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGL- 354 (418)
Q Consensus 276 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~- 354 (418)
.|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++ |+++|++++..+..|.
T Consensus 80 ~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~---------------------Ll~~ga~~~~~~~~~~~ 138 (239)
T 1ycs_B 80 AGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKF---------------------LVESGAAVFAMTYSDMQ 138 (239)
T ss_dssp HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHH---------------------HHHTTCCTTCCCSSSCC
T ss_pred cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHH---------------------HHHcCCCcceecCCCCc
Confidence 999999999999999999999999999999988887776665 8899999999988776
Q ss_pred cHHHHH--HHcCCHHHHHHHHHcCCCCCcC---------CCCCCcHhHHHHhcCCcceeehhhhc
Q 048601 355 TPLHIA--AIKGHKHVVLLLIEFGADVECQ---------DNEGHAPLHLAVEGGRVEPLLFIWLK 408 (418)
Q Consensus 355 t~L~~A--~~~g~~~~v~~Ll~~ga~~~~~---------d~~g~t~l~~A~~~g~~~~v~~Ll~~ 408 (418)
||||+| +..|+.+++++|+++|++++.. +..+.+++++|++.|. ++++|...
T Consensus 139 t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~ 201 (239)
T 1ycs_B 139 TAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHRE 201 (239)
T ss_dssp CHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCC
T ss_pred chHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEec
Confidence 999999 7889999999999999988765 6678899999988886 66766643
No 78
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.5e-33 Score=244.31 Aligned_cols=208 Identities=17% Similarity=0.125 Sum_probs=171.3
Q ss_pred HHHHHhcchhhhh-cCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHH
Q 048601 140 VKSILKRQKMILA-GLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLV 218 (418)
Q Consensus 140 vk~Ll~~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll 218 (418)
|+.|++++++... ......+.++|+.|+. .|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~----~d~~g~tpLh~A~~~g~~~~v~~Ll 74 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAAL--TGELEVVQQAVKEMNDPSQ----PNEEGITALHNAICGANYSIVDFLI 74 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHH--HTCHHHHHHHHHHSSCTTC----CCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CeehhccCCCCccccccccchhHHHHHHHH--cCCHHHHHHHHhcCCCCCC----CCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 4677777766543 2234567889999999 8999999999999999887 8999999999999999999999999
Q ss_pred hcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCccHHHHH--HHcCCHHHHHHHHHcCCCCCcc
Q 048601 219 RMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKG-KDGKTSLHNA--AANGDRRMVEMLIEMGADPTIK 295 (418)
Q Consensus 219 ~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A--~~~g~~~~v~~Ll~~g~~~~~~ 295 (418)
+.+. +++.+|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+| +..|+.+++++|+++|++++..
T Consensus 75 ~~ga--~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~ 152 (229)
T 2vge_A 75 TAGA--NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLM 152 (229)
T ss_dssp HTTC--CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTS
T ss_pred HCCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccc
Confidence 8754 788999999999999999999999999999999999987 6999999999 9999999999999999999999
Q ss_pred CCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCC--CCcCCCCCCcHHHHHHHcCCHHHHHH-H
Q 048601 296 DDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAS--TNYCDQYGLTPLHIAAIKGHKHVVLL-L 372 (418)
Q Consensus 296 ~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~--~~~~~~~g~t~L~~A~~~g~~~~v~~-L 372 (418)
+..|.+|++.++..+.. ++|++.|++ ++.+|..|+||||+|+.+|+.++|+. +
T Consensus 153 ~~~~~~~l~~~~~~~~~------------------------~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~ 208 (229)
T 2vge_A 153 NSGAVYALWDYSAEFGD------------------------ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY 208 (229)
T ss_dssp GGGEEEESSCBCCSSTT------------------------BCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred cCCchHHHHHHhhcccc------------------------ccCccccccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence 99898888755443321 347788888 67889999999999999999999965 4
Q ss_pred HHcCCCC
Q 048601 373 IEFGADV 379 (418)
Q Consensus 373 l~~ga~~ 379 (418)
++.-..+
T Consensus 209 l~~~p~~ 215 (229)
T 2vge_A 209 FGLFPRV 215 (229)
T ss_dssp EESSCCC
T ss_pred hhhCCCC
Confidence 4443333
No 79
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.97 E-value=6.7e-33 Score=256.26 Aligned_cols=243 Identities=14% Similarity=0.098 Sum_probs=157.9
Q ss_pred chHHHHHHHH-CCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHH
Q 048601 124 GPFLLRHAVS-NGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSEL 202 (418)
Q Consensus 124 g~~~L~~A~~-~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L 202 (418)
+.+++++|.. .++.+++++|++++.+ +.|+|++|+. .|+.+++++|++.|+.... ....+..|.|||
T Consensus 65 ~ll~~~~a~~~~~~~~~~~~l~~~g~~---------~~T~Lh~Aa~--~G~~e~v~~Ll~~ga~~~~-~~~~~~~~~tpL 132 (376)
T 2aja_A 65 QLLCLYYAHYNRNAKQLWSDAHKKGIK---------SEVICFVAAI--TGCSSALDTLCLLLTSDEI-VKVIQAENYQAF 132 (376)
T ss_dssp HHHHHHHHHTTTTCTTHHHHHHHHTCC---------HHHHHHHHHH--HCCHHHHHHHTTC--CCSS-CC--CHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCCC---------cCCHHHHHHH--cCCHHHHHHHHHcCCcHHH-HHHhccCCCCHH
Confidence 3456666666 4677777777766532 3477888877 7788888888877762211 001334566788
Q ss_pred HHHHHcCCHHHHHHHHhcccCCC-CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCCCccHHHHHH-HcCC
Q 048601 203 HVAAAFGRTEEISSLVRMKEYES-LDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEA--KGKDGKTSLHNAA-ANGD 278 (418)
Q Consensus 203 ~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~g~t~L~~A~-~~g~ 278 (418)
|+|+..|+.++|++|++.+.... .+..+.+ .||||+|+..|+.+++++|+++|++++. .+..|.||||+|+ ..|+
T Consensus 133 ~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~ 211 (376)
T 2aja_A 133 RLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGH 211 (376)
T ss_dssp HHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCC
Confidence 88888888888888877653100 1122222 7788888888888888888888777665 6667778888888 8888
Q ss_pred HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCch--------HHHHHHcCCHHH------------HHH
Q 048601 279 RRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEA--------VLTAARRGELEG------------LES 338 (418)
Q Consensus 279 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~--------~~~a~~~g~~~~------------~~~ 338 (418)
.++|++|++.|+ .|.|||+.|+..|+.+++++|.++.+ +..|+..|+.++ ++.
T Consensus 212 ~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~ 284 (376)
T 2aja_A 212 HNVINFLLDCPV-------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRN 284 (376)
T ss_dssp HHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-------ccchHHHHHHHCCCHHHHHHHHhcCcccccccHHHHHHHHCCChhhhcHHhhhhhHHHHHH
Confidence 888888877653 26677877777777777777755432 333444555442 223
Q ss_pred HHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHc---------CCCCCcCCCCCCcHhHHHHhcCCcceeehhhhc
Q 048601 339 LLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEF---------GADVECQDNEGHAPLHLAVEGGRVEPLLFIWLK 408 (418)
Q Consensus 339 Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---------ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~ 408 (418)
|+.++ ..+..+.+++|++. |+++ +.+.+||++|+..|+.++|++|+..
T Consensus 285 li~~~------------------~~~~~~~~~~Ll~~~~vk~l~~~g~~~----n~~~~~L~~A~~~g~~e~v~lLl~~ 341 (376)
T 2aja_A 285 LIRRN------------------DEVLLDDIRFLLSIPGIKALAPTATIP----GDANELLRLALRLGNQGACALLLSI 341 (376)
T ss_dssp HHHHC------------------CGGGHHHHHHHHTSTTTGGGSSCCSST----TCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred HHHcc------------------hhhHHHHHHHHHhChhhhhhhccCCCC----CCccHHHHHHHHcCcHHHHHHHHcC
Confidence 33322 11245667777764 4444 4566899999999999999999954
No 80
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.96 E-value=2.7e-30 Score=225.83 Aligned_cols=158 Identities=23% Similarity=0.280 Sum_probs=115.9
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Q 048601 230 DKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDK 309 (418)
Q Consensus 230 ~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 309 (418)
+..|.||||.|++.++.++++.|+++|++++.. ..|.||||.|+..|+.+++++|++.|++++.+|..|.||||+|+..
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~ 80 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA 80 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 356899999999999999999999999999864 7789999999999999999999999999999999999999999988
Q ss_pred CCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCC-c
Q 048601 310 GHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGH-A 388 (418)
Q Consensus 310 ~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~-t 388 (418)
|+.+++++ |+++|+++|.+|..|+||||+|+..|+.++|++|+++|++++.++..|. |
T Consensus 81 g~~~~v~~---------------------Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t 139 (239)
T 1ycs_B 81 GHTEIVKF---------------------LVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQT 139 (239)
T ss_dssp TCHHHHHH---------------------HHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCC
T ss_pred CCHHHHHH---------------------HHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcc
Confidence 88776665 8899999999999999999999999999999999999999999998887 9
Q ss_pred HhHHH--HhcCCcceeehhhhcc
Q 048601 389 PLHLA--VEGGRVEPLLFIWLKQ 409 (418)
Q Consensus 389 ~l~~A--~~~g~~~~v~~Ll~~~ 409 (418)
||++| +..|+.+++++|+...
T Consensus 140 ~l~~a~~~~~g~~~~~~~Ll~~~ 162 (239)
T 1ycs_B 140 AADKCEEMEEGYTQCSQFLYGVQ 162 (239)
T ss_dssp HHHHCCSSSTTCCCHHHHHHHHH
T ss_pred hHHHHHHhhhccHHHHHHHHHhh
Confidence 99999 8899999999999543
No 81
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.96 E-value=3e-29 Score=204.11 Aligned_cols=145 Identities=22% Similarity=0.299 Sum_probs=115.7
Q ss_pred ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCC-HHHH
Q 048601 227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRS-CFDV 305 (418)
Q Consensus 227 ~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~ 305 (418)
+..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+ .|+.+++++|+++|++++.++..|.| |||+
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~ 84 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD 84 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence 456778999999999999999999999999999999999999999985 89999999999999999999999999 9999
Q ss_pred HHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCC
Q 048601 306 ARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNE 385 (418)
Q Consensus 306 A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~ 385 (418)
|+..|+.+++++ |+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..
T Consensus 85 A~~~~~~~~v~~---------------------Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~ 143 (156)
T 1bi7_B 85 AAREGFLDTLVV---------------------LHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHA 143 (156)
T ss_dssp HHHHTCHHHHHH---------------------HHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------
T ss_pred HHHCCCHHHHHH---------------------HHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcC
Confidence 988877776655 88899999999999999999999999999999999999999999999
Q ss_pred CCcHhHHH
Q 048601 386 GHAPLHLA 393 (418)
Q Consensus 386 g~t~l~~A 393 (418)
|.||.+-+
T Consensus 144 g~t~~~~~ 151 (156)
T 1bi7_B 144 RIDAAEGP 151 (156)
T ss_dssp --------
T ss_pred cCcccccC
Confidence 99987743
No 82
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.96 E-value=9.9e-29 Score=196.16 Aligned_cols=133 Identities=25% Similarity=0.402 Sum_probs=104.2
Q ss_pred CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCC-CCCH
Q 048601 224 ESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDR-GRSC 302 (418)
Q Consensus 224 ~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~ 302 (418)
.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+. |+.+++++|+++|++++.++.. |.||
T Consensus 3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~ 81 (136)
T 1d9s_A 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRP 81 (136)
T ss_dssp CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCH
T ss_pred CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCH
Confidence 3567777788888888888888888888888888888888888888888888 8888888888888888877777 7888
Q ss_pred HHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 048601 303 FDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGAD 378 (418)
Q Consensus 303 l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 378 (418)
||+|+..|+.+++++ |+++|++++.++..|.||||+|+..|+.+++++|+++|+|
T Consensus 82 L~~A~~~~~~~~v~~---------------------Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 82 VHDAAREGFLDTLVV---------------------LHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHHHHTCHHHHHH---------------------HHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHHHHHcCCHHHHHH---------------------HHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 777777666555544 6777778887777788888888888888888888887765
No 83
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.96 E-value=1.4e-29 Score=211.58 Aligned_cols=165 Identities=16% Similarity=0.197 Sum_probs=118.9
Q ss_pred chHHHHHHHcCCHHHHHHHHhcccCCCCccCC-CCCCcHHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCCccHHHHH
Q 048601 199 WSELHVAAAFGRTEEISSLVRMKEYESLDCRD-KEGRTPLHLAVNKTSI----GCAKVLLESGADKEAKGKDGKTSLHNA 273 (418)
Q Consensus 199 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~~~~t~L~~A~~~~~~----~~v~~Ll~~~~~~~~~~~~g~t~L~~A 273 (418)
.++|+.|+..|+.+.++.++... .+..+ ..|.||||+|+..|+. +++++|+++|++++.++..|+||||+|
T Consensus 7 ~~~l~~Aa~~g~~~~~~~l~~~~----~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a 82 (186)
T 3t8k_A 7 YRTVSAAAMLGTYEDFLELFEKG----YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPL 82 (186)
T ss_dssp CSSHHHHHHHSCHHHHHHHHHHS----SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHH
T ss_pred ccHHHHHHHcCCHHHHHHHHhcC----cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence 46788888888888888777543 23344 5688888888887764 478888888888888888888888888
Q ss_pred HHcCC------HHHHHHHHHcCCCCCccCCCCC-CHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHh-CCCC
Q 048601 274 AANGD------RRMVEMLIEMGADPTIKDDRGR-SCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLD-KGAS 345 (418)
Q Consensus 274 ~~~g~------~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~-~g~~ 345 (418)
+..|+ .+++++|+++|++++.+|..|. ||||+|+..+..+ .++.+++++|++ +|++
T Consensus 83 ~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~----------------~~~~~iv~~Ll~~~gad 146 (186)
T 3t8k_A 83 FQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDE----------------NEMIPLYKLIFSQSGLQ 146 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCH----------------HHHHHHHHHHHTSTTCC
T ss_pred HHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCCh----------------hhHHHHHHHHHHhcCCC
Confidence 87776 5678888888888888887777 7887777644322 112345666777 7777
Q ss_pred CCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC
Q 048601 346 TNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQD 383 (418)
Q Consensus 346 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d 383 (418)
++.+|..|+||||+|+..|+.++|++|.++..+.+.++
T Consensus 147 ~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 147 LLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184 (186)
T ss_dssp TTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred CcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhccc
Confidence 77777777788888777777777777777654444443
No 84
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.96 E-value=1.7e-29 Score=211.08 Aligned_cols=159 Identities=17% Similarity=0.074 Sum_probs=142.1
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCccHHHHHHHcCCH----HHHHHHHHcCCCCCccCCCCCCHHHHHH
Q 048601 233 GRTPLHLAVNKTSIGCAKVLLESGADKEAKG-KDGKTSLHNAAANGDR----RMVEMLIEMGADPTIKDDRGRSCFDVAR 307 (418)
Q Consensus 233 ~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 307 (418)
+.++|+.|++.|+.+.++.+++.+. +..+ ..|.||||+|+.+|+. +++++|+++|++++.++..|+||||+|+
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~ 83 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF 83 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence 4678999999999999999998775 4455 6799999999999985 5999999999999999999999999999
Q ss_pred HcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCC-cHHHHHHHcC-----CHHHHHHHHH-cCCCCC
Q 048601 308 DKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGL-TPLHIAAIKG-----HKHVVLLLIE-FGADVE 380 (418)
Q Consensus 308 ~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~g-----~~~~v~~Ll~-~ga~~~ 380 (418)
..++.++.+. .+++++|+++|+++|.+|..|+ ||||+|+..+ +.+++++|++ +|++++
T Consensus 84 ~~~~~~~~~~---------------~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~ 148 (186)
T 3t8k_A 84 QGGGNDITGT---------------TELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL 148 (186)
T ss_dssp HHCTTCHHHH---------------HHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT
T ss_pred HcCCcchhhH---------------HHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc
Confidence 9887655432 4778889999999999999999 9999999954 4679999999 999999
Q ss_pred cCCCCCCcHhHHHHhcCCcceeehhhhc
Q 048601 381 CQDNEGHAPLHLAVEGGRVEPLLFIWLK 408 (418)
Q Consensus 381 ~~d~~g~t~l~~A~~~g~~~~v~~Ll~~ 408 (418)
.+|..|+|||++|++.|+.++|++|...
T Consensus 149 ~~d~~G~TpL~~A~~~~~~~~v~~L~~~ 176 (186)
T 3t8k_A 149 IKDKWGLTALEFVKRCQKPIALKMMEDY 176 (186)
T ss_dssp CCCTTSCCHHHHHHTTTCHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999999999744
No 85
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.95 E-value=8.2e-29 Score=196.62 Aligned_cols=131 Identities=31% Similarity=0.394 Sum_probs=124.0
Q ss_pred CCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHH
Q 048601 256 GADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEG 335 (418)
Q Consensus 256 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~ 335 (418)
+++++..+..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+. |+.+++++
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~------------------ 62 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAEL------------------ 62 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHH------------------
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHH------------------
Confidence 46788999999999999999999999999999999999999999999999988 87776666
Q ss_pred HHHHHhCCCCCCcCCCC-CCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhc
Q 048601 336 LESLLDKGASTNYCDQY-GLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLK 408 (418)
Q Consensus 336 ~~~Ll~~g~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~ 408 (418)
|+++|++++.++.. |+||||+|+..|+.+++++|+++|++++.+|..|+|||++|++.|+.+++++|+++
T Consensus 63 ---Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ 133 (136)
T 1d9s_A 63 ---LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133 (136)
T ss_dssp ---HHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHH
T ss_pred ---HHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 88999999999999 99999999999999999999999999999999999999999999999999999943
No 86
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.95 E-value=1.5e-26 Score=180.81 Aligned_cols=126 Identities=50% Similarity=0.754 Sum_probs=100.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Q 048601 232 EGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGH 311 (418)
Q Consensus 232 ~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 311 (418)
+|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 80 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence 47788888888888888888888888888888888888888888888888888888888888887788888887777666
Q ss_pred HHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 048601 312 IEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGAD 378 (418)
Q Consensus 312 ~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 378 (418)
.+++++ |+++|++++.++..|.|||++|+..|+.+++++|+++|+|
T Consensus 81 ~~~~~~---------------------Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 81 LEVVKL---------------------LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHHHH---------------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHHHH---------------------HHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 655554 6777888888888888888888888888888888888775
No 87
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.94 E-value=1.3e-26 Score=183.98 Aligned_cols=126 Identities=31% Similarity=0.409 Sum_probs=77.2
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Q 048601 230 DKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDK 309 (418)
Q Consensus 230 ~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 309 (418)
...+.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~ 90 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI 90 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence 34456666666666666666666666666666666666666666666666666666666666666666666666665555
Q ss_pred CCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 048601 310 GHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFG 376 (418)
Q Consensus 310 ~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 376 (418)
|+.+++++ |+++|++++..|..|.||||+|+..|+.+++++|+++|
T Consensus 91 ~~~~~v~~---------------------Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 91 GHLEIAEV---------------------LLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp TCHHHHHH---------------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred CCHHHHHH---------------------HHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 54444433 55556666666666666666666666666666666554
No 88
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.94 E-value=4.6e-27 Score=191.18 Aligned_cols=143 Identities=25% Similarity=0.314 Sum_probs=112.3
Q ss_pred cCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcc-HHHH
Q 048601 194 KTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKT-SLHN 272 (418)
Q Consensus 194 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t-~L~~ 272 (418)
.+..|.||||+|+..|+.+++++|++.+. +++..+..|.||||+|+ .|+.+++++|+++|++++.++..|.| |||+
T Consensus 8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~ 84 (156)
T 1bi7_B 8 SMEPSADWLATAAARGRVEEVRALLEAGA--NPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD 84 (156)
T ss_dssp --CCSTTHHHHHHHHTCHHHHHHHHTTTC--CTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred CCccchHHHHHHHHcCCHHHHHHHHHcCC--CCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence 56778899999999999999999998654 77888999999999985 89999999999999999999999998 9999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCC
Q 048601 273 AAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQY 352 (418)
Q Consensus 273 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~ 352 (418)
|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++ |+++|++++.++..
T Consensus 85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~---------------------Ll~~ga~~~~~~~~ 143 (156)
T 1bi7_B 85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY---------------------LRAAAGGTRGSNHA 143 (156)
T ss_dssp HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHH---------------------HSSCC---------
T ss_pred HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHH---------------------HHHcCCCCCccCcC
Confidence 999999999999999999999999999999999888777766655 88999999999999
Q ss_pred CCcHHHHH
Q 048601 353 GLTPLHIA 360 (418)
Q Consensus 353 g~t~L~~A 360 (418)
|.||.+-+
T Consensus 144 g~t~~~~~ 151 (156)
T 1bi7_B 144 RIDAAEGP 151 (156)
T ss_dssp --------
T ss_pred cCcccccC
Confidence 99887743
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.94 E-value=1.7e-26 Score=183.19 Aligned_cols=124 Identities=35% Similarity=0.557 Sum_probs=116.8
Q ss_pred CCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhC
Q 048601 263 GKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDK 342 (418)
Q Consensus 263 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~ 342 (418)
...+.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++ |+++
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~ 69 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEV---------------------LLKN 69 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH---------------------HHHT
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHH---------------------HHHc
Confidence 3567899999999999999999999999999999999999999998887776665 8899
Q ss_pred CCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhh
Q 048601 343 GASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWL 407 (418)
Q Consensus 343 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~ 407 (418)
|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|++
T Consensus 70 g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~ 134 (136)
T 2jab_A 70 GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134 (136)
T ss_dssp TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999984
No 90
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.94 E-value=4.9e-27 Score=186.62 Aligned_cols=132 Identities=33% Similarity=0.458 Sum_probs=101.2
Q ss_pred CCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHH
Q 048601 256 GADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEG 335 (418)
Q Consensus 256 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~ 335 (418)
|+++ .++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~------------------ 61 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVEL------------------ 61 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH------------------
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHH------------------
Confidence 4555 567777788888888888888888888887777777778888877777666665554
Q ss_pred HHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhcc
Q 048601 336 LESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQ 409 (418)
Q Consensus 336 ~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~ 409 (418)
|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..+..+++++|..++
T Consensus 62 ---Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 62 ---LLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132 (137)
T ss_dssp ---HHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred ---HHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence 67778888888888888888888888888888888888888888888888888888888888888777443
No 91
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.94 E-value=2.9e-26 Score=179.24 Aligned_cols=123 Identities=46% Similarity=0.729 Sum_probs=116.3
Q ss_pred CCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCC
Q 048601 265 DGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGA 344 (418)
Q Consensus 265 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~ 344 (418)
+|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..++.+++++ |+++|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~---------------------Ll~~g~ 59 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL---------------------LLEAGA 59 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHH---------------------HHHTTC
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHH---------------------HHHcCC
Confidence 48899999999999999999999999999999999999999988877776655 889999
Q ss_pred CCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhc
Q 048601 345 STNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLK 408 (418)
Q Consensus 345 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~ 408 (418)
+++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|+++
T Consensus 60 ~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 123 (126)
T 1n0r_A 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123 (126)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999999999943
No 92
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.93 E-value=2.4e-25 Score=200.47 Aligned_cols=141 Identities=22% Similarity=0.188 Sum_probs=121.9
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCC------CCCCCccHHHHHHHc---CCHHHHHHHHHcCCCCCccCCCCCCH
Q 048601 232 EGRTPLHLAVNKTSIGCAKVLLESGADKEA------KGKDGKTSLHNAAAN---GDRRMVEMLIEMGADPTIKDDRGRSC 302 (418)
Q Consensus 232 ~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~------~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~ 302 (418)
...++|+.|+..|+.+.++.|++.|++++. .+..|.||||+|+.. |+.+++++|+++|++++.+|..|+||
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~Tp 229 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA 229 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCH
T ss_pred chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 345779999999999999999999999988 688999999999997 89999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcC
Q 048601 303 FDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQ 382 (418)
Q Consensus 303 l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~ 382 (418)
||+|+..|+.+++++ |+++|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 230 Lh~A~~~g~~~~v~~---------------------Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~---- 284 (301)
T 2b0o_E 230 LHYAALYNQPDCLKL---------------------LLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG---- 284 (301)
T ss_dssp HHHHHHTTCHHHHHH---------------------HHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH----
T ss_pred HHHHHHcCCHHHHHH---------------------HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC----
Confidence 999998887776665 8899999999999999999999999999999999999986
Q ss_pred CCCCCcHhHHHHhcCCc
Q 048601 383 DNEGHAPLHLAVEGGRV 399 (418)
Q Consensus 383 d~~g~t~l~~A~~~g~~ 399 (418)
.|.||||+|++.|+-
T Consensus 285 --~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 285 --TFAFPLHVDYSWVIS 299 (301)
T ss_dssp --TTSSCCC--------
T ss_pred --CCCChhHHHHhcCCc
Confidence 478999999998864
No 93
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.93 E-value=8.6e-26 Score=179.41 Aligned_cols=129 Identities=29% Similarity=0.443 Sum_probs=95.9
Q ss_pred cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Q 048601 228 CRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVAR 307 (418)
Q Consensus 228 ~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 307 (418)
.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~ 84 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA 84 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence 45677778888888888888888888888777777777888888888888888888888888877777777788887777
Q ss_pred HcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 048601 308 DKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGA 377 (418)
Q Consensus 308 ~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga 377 (418)
..|+.+++++ |+++|++++.+|..|.|||++|+..++.+++++|.+.+.
T Consensus 85 ~~~~~~~v~~---------------------Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 85 KNGHVDIVKL---------------------LLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp HTTCHHHHHH---------------------HHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred HcCCHHHHHH---------------------HHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence 7666665554 677777888888888888888877777777777766543
No 94
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.92 E-value=4.2e-25 Score=171.88 Aligned_cols=116 Identities=30% Similarity=0.348 Sum_probs=84.2
Q ss_pred CCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCC
Q 048601 264 KDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKG 343 (418)
Q Consensus 264 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g 343 (418)
..|.||||+|+..|+.+++++|++.|++++.++..|+||||+|+..|+.+++++ |+++|
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~g 63 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEF---------------------LLLKG 63 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHH---------------------HHTTT
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHH---------------------HHHcC
Confidence 456677777777777777777777777777777777777777766666555544 66777
Q ss_pred CCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcc
Q 048601 344 ASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVE 400 (418)
Q Consensus 344 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~ 400 (418)
++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||+++|...+..+
T Consensus 64 ~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~ 120 (123)
T 3aaa_C 64 ADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKA 120 (123)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHH
T ss_pred CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHH
Confidence 777777777888888888888888888888888888888888888888875444333
No 95
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.92 E-value=3e-25 Score=185.50 Aligned_cols=140 Identities=28% Similarity=0.399 Sum_probs=118.3
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCccHHHHH
Q 048601 195 TKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKG-KDGKTSLHNA 273 (418)
Q Consensus 195 ~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A 273 (418)
+..|.||||.|+..|+.+++++|++ + .+++.+|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~--~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A 117 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-D--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 117 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-T--SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-c--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence 4567899999999999999999987 3 4778888899999999999999999999999999998887 7889999999
Q ss_pred HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCC
Q 048601 274 AANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYG 353 (418)
Q Consensus 274 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g 353 (418)
+..|+.+++++|+++|++++.+|..|+||||+|+..++. ..+
T Consensus 118 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~--------------------------------------~~~ 159 (183)
T 3deo_A 118 AGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT--------------------------------------TPK 159 (183)
T ss_dssp HHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT--------------------------------------CCC
T ss_pred HhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC--------------------------------------ccc
Confidence 999999999999999999998899999999988763211 236
Q ss_pred CcHHHHHHHcCCHHHHHHHHHc
Q 048601 354 LTPLHIAAIKGHKHVVLLLIEF 375 (418)
Q Consensus 354 ~t~L~~A~~~g~~~~v~~Ll~~ 375 (418)
.++|++|+..|+.+++++|.++
T Consensus 160 ~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 160 GNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHcCHHHHHHHHHHh
Confidence 7889999999999999888765
No 96
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.92 E-value=1.3e-24 Score=181.60 Aligned_cols=137 Identities=28% Similarity=0.322 Sum_probs=81.5
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCCCHHHHHHHc
Q 048601 231 KEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKD-DRGRSCFDVARDK 309 (418)
Q Consensus 231 ~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A~~~ 309 (418)
..|.||||+|+..|+.+++++|++ |++++.++..|.||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+..
T Consensus 42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~ 120 (183)
T 3deo_A 42 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 120 (183)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhc
Confidence 345566666666666666666666 66666666666666666666666666666666666666555 5566666666555
Q ss_pred CCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcH
Q 048601 310 GHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAP 389 (418)
Q Consensus 310 ~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~ 389 (418)
|+.+++++ |+++|++++.+|..|.||||+|+..++. ..+.++
T Consensus 121 ~~~~~v~~---------------------Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~ 162 (183)
T 3deo_A 121 VRPEVVEA---------------------LVELGADIEVEDERGLTALELAREILKT-----------------TPKGNP 162 (183)
T ss_dssp TCHHHHHH---------------------HHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSH
T ss_pred CcHHHHHH---------------------HHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccH
Confidence 55444443 5556666666666666666666553322 223456
Q ss_pred hHHHHhcCCcceeehhh
Q 048601 390 LHLAVEGGRVEPLLFIW 406 (418)
Q Consensus 390 l~~A~~~g~~~~v~~Ll 406 (418)
|++|++.|+.+++++|.
T Consensus 163 l~~a~~~~~~~i~~~L~ 179 (183)
T 3deo_A 163 MQFGRRIGLEKVINVLE 179 (183)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCHHHHHHHHH
Confidence 66666666666666655
No 97
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.92 E-value=6.7e-25 Score=191.99 Aligned_cols=142 Identities=27% Similarity=0.388 Sum_probs=128.5
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCccHHHHHH
Q 048601 196 KDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKG-KDGKTSLHNAA 274 (418)
Q Consensus 196 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~ 274 (418)
..|.||||+|+..|+.+++++|++ + .+++.+|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~ 119 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-D--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 119 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-T--CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-C--CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence 457899999999999999999997 3 4788999999999999999999999999999999999988 78999999999
Q ss_pred HcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCC
Q 048601 275 ANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGL 354 (418)
Q Consensus 275 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~ 354 (418)
..|+.+++++|+++|++++.++..|.||||+|+..++ ...+.
T Consensus 120 ~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~--------------------------------------~~~~~ 161 (244)
T 3ui2_A 120 GYVRPEVVEALVELGADIEVEDERGLTALELAREILK--------------------------------------TTPKG 161 (244)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT--------------------------------------TCCCS
T ss_pred HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh--------------------------------------ccCCC
Confidence 9999999999999999999999999999999975211 13478
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCC
Q 048601 355 TPLHIAAIKGHKHVVLLLIEFGAD 378 (418)
Q Consensus 355 t~L~~A~~~g~~~~v~~Ll~~ga~ 378 (418)
|||++|+..|+.+++++|++++.+
T Consensus 162 ~~l~~a~~~g~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 162 NPMQFGRRIGLEKVINVLEGQVFE 185 (244)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred CHHHHHHHcChHHHHHHHHHhccc
Confidence 999999999999999999997544
No 98
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.92 E-value=4.2e-25 Score=193.32 Aligned_cols=140 Identities=27% Similarity=0.301 Sum_probs=128.1
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCCCHHHHHHH
Q 048601 230 DKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKD-DRGRSCFDVARD 308 (418)
Q Consensus 230 ~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A~~ 308 (418)
+..|.||||+|+..|+.+++++|++ |++++.++..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+.
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~ 120 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 120 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence 3568999999999999999999999 99999999999999999999999999999999999999988 789999999998
Q ss_pred cCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCc
Q 048601 309 KGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHA 388 (418)
Q Consensus 309 ~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t 388 (418)
.|+.+++++ |+++|++++.++..|.||||+|+..++ ...+.|
T Consensus 121 ~g~~~~v~~---------------------Ll~~ga~~~~~d~~g~t~l~~A~~~~~-----------------~~~~~~ 162 (244)
T 3ui2_A 121 YVRPEVVEA---------------------LVELGADIEVEDERGLTALELAREILK-----------------TTPKGN 162 (244)
T ss_dssp TTCHHHHHH---------------------HHHTTCCTTCCCTTCCCHHHHHHHHHT-----------------TCCCSS
T ss_pred cCCHHHHHH---------------------HHHCCCCCCCCCCCCCcHHHHHHHHHh-----------------ccCCCC
Confidence 888777665 899999999999999999999986322 256789
Q ss_pred HhHHHHhcCCcceeehhhhc
Q 048601 389 PLHLAVEGGRVEPLLFIWLK 408 (418)
Q Consensus 389 ~l~~A~~~g~~~~v~~Ll~~ 408 (418)
||++|+..|+.+++++|+..
T Consensus 163 ~l~~a~~~g~~~iv~~L~~~ 182 (244)
T 3ui2_A 163 PMQFGRRIGLEKVINVLEGQ 182 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHh
Confidence 99999999999999999864
No 99
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.91 E-value=3.7e-25 Score=191.02 Aligned_cols=136 Identities=21% Similarity=0.252 Sum_probs=91.0
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHH
Q 048601 230 DKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEM-GADPTIKDDRGRSCFDVARD 308 (418)
Q Consensus 230 ~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~ 308 (418)
+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++. |++++.+|..|+||||+|+.
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~ 149 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW 149 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence 44567777777777777777777777777777777777777777777777777777777 77777777777777777776
Q ss_pred cCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCC
Q 048601 309 KGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEG 386 (418)
Q Consensus 309 ~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g 386 (418)
.|+.+++++ |+++|++++.++..|.|||++|+..|+.++++.|++.|++.+.++..|
T Consensus 150 ~~~~~~v~~---------------------Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 150 KGYADIVQL---------------------LLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp HTCHHHHHH---------------------HHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred cCCHHHHHH---------------------HHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence 666555544 677777888788888888888888888888888888888776665544
No 100
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.91 E-value=2.4e-24 Score=167.58 Aligned_cols=109 Identities=29% Similarity=0.366 Sum_probs=54.9
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHH
Q 048601 196 KDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAA 275 (418)
Q Consensus 196 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~ 275 (418)
..|.||||+|+..|+.+++++|++.+. +++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~ 82 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGE--DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY 82 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTC--CTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCC--CcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence 344455555555555555555554332 344444555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHcCCCCCccCCCCCCHHHHH
Q 048601 276 NGDRRMVEMLIEMGADPTIKDDRGRSCFDVA 306 (418)
Q Consensus 276 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A 306 (418)
.|+.+++++|+++|++++.++..|.||+++|
T Consensus 83 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 83 EGHVSCVKLLLSKGADKTVKGPDGLTAFEAT 113 (123)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence 5555555555555555555555555555544
No 101
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.90 E-value=1.7e-24 Score=186.83 Aligned_cols=125 Identities=23% Similarity=0.270 Sum_probs=114.3
Q ss_pred CCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhC
Q 048601 263 GKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDK 342 (418)
Q Consensus 263 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~ 342 (418)
+..|.||||+|+..|+.+++++|++.|++++.++..|+||||+|+..|+.+++++ |+++
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~ 128 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEM---------------------LFTQ 128 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH---------------------HTTS
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHH---------------------HHcC
Confidence 4678999999999999999999999999999999999999999998888777666 7887
Q ss_pred -CCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhc
Q 048601 343 -GASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLK 408 (418)
Q Consensus 343 -g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~ 408 (418)
|++++.+|..|+||||+|+..|+.++|++|+++|++++.+|..|.|||++|+..|+.++++.|+..
T Consensus 129 ~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~ 195 (222)
T 3ehr_A 129 PNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGT 195 (222)
T ss_dssp TTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-----
T ss_pred CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999843
No 102
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.90 E-value=6.2e-24 Score=191.28 Aligned_cols=141 Identities=23% Similarity=0.239 Sum_probs=119.6
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhcccCCCCcc------CCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCc
Q 048601 197 DGWSELHVAAAFGRTEEISSLVRMKEYESLDC------RDKEGRTPLHLAVNK---TSIGCAKVLLESGADKEAKGKDGK 267 (418)
Q Consensus 197 ~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~------~~~~~~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~g~ 267 (418)
...++|+.|+..|+.+.+++|++.+. +++. .+..|.||||+|+.. |+.+++++|+++|++++.+|..|.
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~~g~--d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~ 227 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFANGQ--DFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN 227 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTC--CTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCC
T ss_pred chHHHHhhhhhccCHHHHHHHHhcCC--cccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCC
Confidence 34578999999999999999997665 5555 588999999999997 899999999999999999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCC
Q 048601 268 TSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTN 347 (418)
Q Consensus 268 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~ 347 (418)
||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++ |+++|++
T Consensus 228 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~---------------------Ll~~ga~-- 284 (301)
T 2b0o_E 228 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEEL---------------------LEQAQAG-- 284 (301)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHH---------------------HHHHHHH--
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHH---------------------HHHhcCC--
Confidence 99999999999999999999999999999999999999999888887776 6666654
Q ss_pred cCCCCCCcHHHHHHHcCCH
Q 048601 348 YCDQYGLTPLHIAAIKGHK 366 (418)
Q Consensus 348 ~~~~~g~t~L~~A~~~g~~ 366 (418)
.|.||||+|+.+|+.
T Consensus 285 ----~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 285 ----TFAFPLHVDYSWVIS 299 (301)
T ss_dssp ----TTSSCCC--------
T ss_pred ----CCCChhHHHHhcCCc
Confidence 478999999999874
No 103
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.90 E-value=4.4e-23 Score=199.24 Aligned_cols=126 Identities=22% Similarity=0.217 Sum_probs=78.1
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCC------CCCCccHHHHHHH---cCCHHHHHHHHHcCCCCCccCCCCCCHHHH
Q 048601 235 TPLHLAVNKTSIGCAKVLLESGADKEAK------GKDGKTSLHNAAA---NGDRRMVEMLIEMGADPTIKDDRGRSCFDV 305 (418)
Q Consensus 235 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~------~~~g~t~L~~A~~---~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~ 305 (418)
+.|+.|+..|+.++++.|++.|++++.. +..|.||||+|+. .|+.+++++|+++|++++.+|..|+||||+
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~ 213 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY 213 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHH
T ss_pred HHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHH
Confidence 4566666666666666666666666655 5566666666644 566666666666666666666666666666
Q ss_pred HHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc
Q 048601 306 ARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVEC 381 (418)
Q Consensus 306 A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~ 381 (418)
|+..|+.+++++ |+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.
T Consensus 214 A~~~g~~~~v~~---------------------Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~ 268 (497)
T 3lvq_E 214 AALYNQPDCLKL---------------------LLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFA 268 (497)
T ss_dssp HTTTTCHHHHHH---------------------HHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC----
T ss_pred HHHcCCHHHHHH---------------------HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 666555554444 5666666666666666666666666666666666666666654
No 104
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.89 E-value=3.8e-23 Score=190.26 Aligned_cols=150 Identities=23% Similarity=0.210 Sum_probs=117.6
Q ss_pred cCCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCCCC--CCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHH
Q 048601 228 CRDKEGRTPLHLAVNK-TSIGCAKVLLESGADKEAKG--KDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFD 304 (418)
Q Consensus 228 ~~~~~~~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~ 304 (418)
.....+.|+||.|+.. |+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++.+|..|+||||
T Consensus 194 l~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh 273 (368)
T 3jue_A 194 LGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLH 273 (368)
T ss_dssp ---CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred cccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 3444567899999999 99999999999999999988 88999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCC---CCCc
Q 048601 305 VARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGA---DVEC 381 (418)
Q Consensus 305 ~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga---~~~~ 381 (418)
+|+..|+.+++++ |+++|++++..|..|.||||+|+..|+.+++++|++.+. +...
T Consensus 274 ~A~~~g~~~~v~~---------------------LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~ 332 (368)
T 3jue_A 274 HATILGHTGLACL---------------------FLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQ 332 (368)
T ss_dssp HHHHHTCHHHHHH---------------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-------
T ss_pred HHHHcCcHHHHHH---------------------HHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccc
Confidence 9998887776665 899999999999999999999999999999999998763 3344
Q ss_pred CCCCCCcHhHHHHhcCC
Q 048601 382 QDNEGHAPLHLAVEGGR 398 (418)
Q Consensus 382 ~d~~g~t~l~~A~~~g~ 398 (418)
.+..+.|+++++.....
T Consensus 333 ~~~~~~t~l~i~~~~~~ 349 (368)
T 3jue_A 333 GQAGDETYLDIFRDFSL 349 (368)
T ss_dssp -----------------
T ss_pred cCCCCCCHHHHHHHHHh
Confidence 56677888887766543
No 105
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.89 E-value=9.7e-23 Score=181.43 Aligned_cols=211 Identities=17% Similarity=0.122 Sum_probs=147.4
Q ss_pred HHHHHHHHcCCCCccc-ccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 048601 175 DMVSLLLRAGLSIEID-ERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLL 253 (418)
Q Consensus 175 ~~v~~Ll~~g~~~~~~-~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll 253 (418)
++....-+.|..+..- ....|..+.++++.+...|+..+.+++...-........+. +.... .....-..+++.
T Consensus 42 ~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~-~s~~~----~~~~fI~aKYl~ 116 (278)
T 1dcq_A 42 ECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNP-GSDMI----ARKDYITAKYME 116 (278)
T ss_dssp HHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCT-TCCHH----HHHHHHHHHHTT
T ss_pred HHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCC-CCCHH----HHHHHHHHHHHH
Confidence 3444444445544320 01145667789999999999877666543221110001111 11111 111111122332
Q ss_pred Hc-CCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCC------ccCCCCCCHHHHHHHc---CCHHHHHHHhcCch
Q 048601 254 ES-GADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPT------IKDDRGRSCFDVARDK---GHIEVLEVLQRGEA 323 (418)
Q Consensus 254 ~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------~~~~~g~t~l~~A~~~---~~~~~~~~l~~~~~ 323 (418)
.. ............++|+.|+..|+.+.++.+++.|++++ ..+..|+||||+|+.. |+.++
T Consensus 117 ~~f~~~~~~~~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~--------- 187 (278)
T 1dcq_A 117 RRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHI--------- 187 (278)
T ss_dssp CTTSCCCSSSHHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHH---------
T ss_pred hhcccccccccchhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHH---------
Confidence 22 11112222234578999999999999999999999854 4578899999999987 55554
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceee
Q 048601 324 VLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLL 403 (418)
Q Consensus 324 ~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~ 403 (418)
+++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|++++.+|..|.|||++|+..|+.++++
T Consensus 188 ------------v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~ 255 (278)
T 1dcq_A 188 ------------VDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEE 255 (278)
T ss_dssp ------------HHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred ------------HHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHH
Confidence 55599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCC
Q 048601 404 FIWLKQWG 411 (418)
Q Consensus 404 ~Ll~~~~g 411 (418)
+|++...+
T Consensus 256 ~Ll~~ga~ 263 (278)
T 1dcq_A 256 LLTQALSG 263 (278)
T ss_dssp HHHHHHTT
T ss_pred HHHHcCCC
Confidence 99977665
No 106
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.88 E-value=3.1e-22 Score=178.13 Aligned_cols=126 Identities=23% Similarity=0.241 Sum_probs=108.5
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCC------CCCCCCCccHHHHHHHc---CCHHHHHHHHHcCCCCCccCCCCCCHH
Q 048601 233 GRTPLHLAVNKTSIGCAKVLLESGADK------EAKGKDGKTSLHNAAAN---GDRRMVEMLIEMGADPTIKDDRGRSCF 303 (418)
Q Consensus 233 ~~t~L~~A~~~~~~~~v~~Ll~~~~~~------~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~l 303 (418)
..++|+.|+..|+.+.++.+++.|+++ +..+..|.||||+|+.. |+.+++++|+++|++++.+|..|+|||
T Consensus 130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpL 209 (278)
T 1dcq_A 130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTAL 209 (278)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHH
T ss_pred hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHH
Confidence 346788888888888888888888874 44477889999999988 889999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 048601 304 DVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADV 379 (418)
Q Consensus 304 ~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~ 379 (418)
|+|+..|+.+++++ |+++|++++.+|..|.||||+|+..|+.+++++|+++|++.
T Consensus 210 h~A~~~g~~~~v~~---------------------Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 210 HYCCLTDNAECLKL---------------------LLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp HHHHHTTCHHHHHH---------------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHH---------------------HHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 99888877776665 78899999999999999999999999999999999998853
No 107
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.88 E-value=5.4e-22 Score=145.97 Aligned_cols=92 Identities=49% Similarity=0.734 Sum_probs=57.2
Q ss_pred CccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHhCCCC
Q 048601 266 GKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLDKGAS 345 (418)
Q Consensus 266 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~~g~~ 345 (418)
|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++ |+++|++
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~---------------------Ll~~ga~ 60 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL---------------------LLEAGAD 60 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH---------------------HHHTTCC
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHH---------------------HHHcCCC
Confidence 5566666666666666666666666666666666666666555555444433 5566666
Q ss_pred CCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 048601 346 TNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGAD 378 (418)
Q Consensus 346 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 378 (418)
++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 61 ~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 666666666777777777777777777766654
No 108
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.87 E-value=4.4e-22 Score=183.17 Aligned_cols=126 Identities=26% Similarity=0.368 Sum_probs=116.8
Q ss_pred CCCCccHHHHHHHc-CCHHHHHHHHHcCCCCCccC--CCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHH
Q 048601 263 GKDGKTSLHNAAAN-GDRRMVEMLIEMGADPTIKD--DRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESL 339 (418)
Q Consensus 263 ~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~--~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~L 339 (418)
...+.|+||.|+.. |+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++ |
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~---------------------L 254 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEF---------------------L 254 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHH---------------------H
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHH---------------------H
Confidence 34567899999999 99999999999999999988 889999999998887776665 8
Q ss_pred HhCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcHhHHHHhcCCcceeehhhhcc
Q 048601 340 LDKGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAPLHLAVEGGRVEPLLFIWLKQ 409 (418)
Q Consensus 340 l~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~ 409 (418)
+++|+++|..|..|+||||+|+..|+.++|++|+++|++++.+|..|.|||++|+..|+.+++++|+..+
T Consensus 255 L~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~ 324 (368)
T 3jue_A 255 LQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAK 324 (368)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998554
No 109
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.86 E-value=4.1e-22 Score=152.91 Aligned_cols=107 Identities=38% Similarity=0.551 Sum_probs=73.2
Q ss_pred CCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHh
Q 048601 262 KGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLD 341 (418)
Q Consensus 262 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~ 341 (418)
+|.+|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++ |++
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~---------------------Ll~ 63 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKL---------------------LLA 63 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHH---------------------HTT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHH---------------------HHH
Confidence 45566666666666666666666666666666666666666666666555554443 666
Q ss_pred CCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCcH
Q 048601 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLLIEFGADVECQDNEGHAP 389 (418)
Q Consensus 342 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~ 389 (418)
+|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.+|
T Consensus 64 ~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 64 KGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp TTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred cCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence 667777777777778888887788888888888888887777777766
No 110
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.86 E-value=3.6e-21 Score=141.52 Aligned_cols=85 Identities=48% Similarity=0.770 Sum_probs=45.8
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Q 048601 233 GRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHI 312 (418)
Q Consensus 233 ~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 312 (418)
|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~ 81 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 81 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence 45555555555555555555555555555555555555555555555555555555555555555555555555555444
Q ss_pred HHHHH
Q 048601 313 EVLEV 317 (418)
Q Consensus 313 ~~~~~ 317 (418)
+++++
T Consensus 82 ~~~~~ 86 (93)
T 1n0q_A 82 EVVKL 86 (93)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 111
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.86 E-value=4.8e-21 Score=184.97 Aligned_cols=132 Identities=19% Similarity=0.128 Sum_probs=115.5
Q ss_pred hhhHHHHHHHhhCCHHHHHHHHHcCCCCccccc--ccCCCCchHHHHHHH---cCCHHHHHHHHhcccCCCCccCCCCCC
Q 048601 160 ESLYRVATELAANSEDMVSLLLRAGLSIEIDER--VKTKDGWSELHVAAA---FGRTEEISSLVRMKEYESLDCRDKEGR 234 (418)
Q Consensus 160 ~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~--~~~~~~~t~L~~A~~---~g~~~~v~~Ll~~~~~~~~~~~~~~~~ 234 (418)
...|+.|+. .|+.++++.|++.|++++.... ..+..|.||||+|+. .|+.+++++|++.+. +++.+|..|.
T Consensus 133 ~~~L~~A~~--~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga--~vn~~d~~g~ 208 (497)
T 3lvq_E 133 PQRLWTAIC--NRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG--HLDAKAADGN 208 (497)
T ss_dssp HHHHHHHHH--HTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSC--CTTCCCSSSC
T ss_pred HHHHHHHHh--ccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCC--CCCccCCCCC
Confidence 366888888 8999999999999999886211 127789999999966 899999999998765 8899999999
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCcc
Q 048601 235 TPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIK 295 (418)
Q Consensus 235 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~ 295 (418)
||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..
T Consensus 209 TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~ 269 (497)
T 3lvq_E 209 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAF 269 (497)
T ss_dssp CHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC-----
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999998864
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.85 E-value=1.7e-21 Score=149.38 Aligned_cols=107 Identities=37% Similarity=0.529 Sum_probs=55.2
Q ss_pred cCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHH
Q 048601 194 KTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNA 273 (418)
Q Consensus 194 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A 273 (418)
+|.+|.||||+|+..|+.+++++|++.+. +++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~--~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A 82 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGA--DVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLA 82 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTC--CSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCC--CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence 44455555555555555555555554332 3444555555555555555555555555555555555555555555555
Q ss_pred HHcCCHHHHHHHHHcCCCCCccCCCCCCH
Q 048601 274 AANGDRRMVEMLIEMGADPTIKDDRGRSC 302 (418)
Q Consensus 274 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~ 302 (418)
+..|+.+++++|+++|++++.++..|.+|
T Consensus 83 ~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 83 KKNGHHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp HTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred HHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence 55555555555555555555554444443
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.77 E-value=1.3e-18 Score=132.04 Aligned_cols=92 Identities=34% Similarity=0.487 Sum_probs=78.0
Q ss_pred ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH
Q 048601 227 DCRDKEGRTPLHLAVNKTSIGCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVA 306 (418)
Q Consensus 227 ~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A 306 (418)
...+.+|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A 97 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS 97 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHH
Confidence 44577888899999999999999999988888888888889999999999999999999998988888888889999999
Q ss_pred HHcCCHHHHHHH
Q 048601 307 RDKGHIEVLEVL 318 (418)
Q Consensus 307 ~~~~~~~~~~~l 318 (418)
+..|+.+++++|
T Consensus 98 ~~~~~~~~~~~L 109 (110)
T 2zgd_A 98 IDNGNEDLAEIL 109 (110)
T ss_dssp HHHTCHHHHHHH
T ss_pred HHcCCHHHHHHh
Confidence 888888888875
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.76 E-value=3e-18 Score=129.97 Aligned_cols=90 Identities=32% Similarity=0.514 Sum_probs=55.8
Q ss_pred CCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHhcCchHHHHHHcCCHHHHHHHHh
Q 048601 262 KGKDGKTSLHNAAANGDRRMVEMLIEMGADPTIKDDRGRSCFDVARDKGHIEVLEVLQRGEAVLTAARRGELEGLESLLD 341 (418)
Q Consensus 262 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~Ll~ 341 (418)
.+.+|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++ |++
T Consensus 20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~---------------------Ll~ 78 (110)
T 2zgd_A 20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKL---------------------LLE 78 (110)
T ss_dssp --CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH---------------------HHH
T ss_pred cCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHH---------------------HHH
Confidence 45566777777777777777777777766666666666666666555555444443 555
Q ss_pred CCCCCCcCCCCCCcHHHHHHHcCCHHHHHHH
Q 048601 342 KGASTNYCDQYGLTPLHIAAIKGHKHVVLLL 372 (418)
Q Consensus 342 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~L 372 (418)
+|++++.+|..|+||||+|+..|+.+++++|
T Consensus 79 ~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 79 AGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred cCCCccccccCCCcHHHHHHHcCCHHHHHHh
Confidence 6666666666666666666666666666654
No 115
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=99.55 E-value=3.2e-15 Score=117.90 Aligned_cols=113 Identities=22% Similarity=0.351 Sum_probs=91.0
Q ss_pred ccccccccc-eEEEeecCCCeeEEEEEEecCCCCCceEEEEeecCCCceeecCCCccccCCCceeEEEEecCCCCCCCCC
Q 048601 2 ERLLAVSEQ-EVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQSQIPPTF 80 (418)
Q Consensus 2 ~~l~~~~~~-~~~~~~~~~~~~~~~~~~~n~~~~~~~af~~~tt~~~k~~v~~~~gii~p~~~~~i~~~l~~~~~~p~~~ 80 (418)
+++|.++|. +|.|.++.++++++.++|+|. ++.+||||++||+|.+|+|||+.|+|.|.++..+.++++++.+.
T Consensus 16 ~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~-s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~lq~~~~~---- 90 (152)
T 1wic_A 16 GPLLHISPAEELYFGSIESGEKKTLIVLTNV-TKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGLTV---- 90 (152)
T ss_dssp CSSBCBBSSSCBCCCCSSSSCCCEEEEEEBC-SSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSSSCC----
T ss_pred CCeEEECCCCeEEEeCCCCceEEEEEEEEcC-CCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEecCcccC----
Confidence 689999998 899999999999999999999 56899999999999999999999999999999999999887542
Q ss_pred CCCCchHHHHHHhccC-----CccccccccccCCCCCccceeeeec
Q 048601 81 PRSPSDRFLIKATVFG-----SADSVNSLCVTLPDGSTQDVKFKIA 121 (418)
Q Consensus 81 ~~~~~~~~l~~a~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~ 121 (418)
.+.+.|++.++... +.+++..++.........+.+.+..
T Consensus 91 --~~kDKFlVqs~~v~~~~~~~~~d~~~~wk~~~~~~i~e~kLrv~ 134 (152)
T 1wic_A 91 --SAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCH 134 (152)
T ss_dssp --CSSCCEEEEEEECCSSCCCSHHHHHHHHHHSCTTTCEEEEECBC
T ss_pred --CCCCEEEEEEEEcCCcCCCChhhHHHHHhccCCCceEEEEEEEE
Confidence 33578888887665 3345666665554433334444433
No 116
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.55 E-value=9.5e-15 Score=114.98 Aligned_cols=117 Identities=19% Similarity=0.389 Sum_probs=92.5
Q ss_pred Cccccccccc-eEEEeecCCCeeEEEEEEecCCCCCceEEEEeecCCCceeecCCCccccCCCceeEEEEecCCCCCCCC
Q 048601 1 MERLLAVSEQ-EVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQSQIPPT 79 (418)
Q Consensus 1 ~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~n~~~~~~~af~~~tt~~~k~~v~~~~gii~p~~~~~i~~~l~~~~~~p~~ 79 (418)
++++|.++|. +|.|.+++++++++.++|+|. ++.++|||++||+|.+|+|+|+.|+|.|.++..+.+.+++....|.
T Consensus 11 ~~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~-s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l~~~~~~p~- 88 (147)
T 2cri_A 11 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNP-SDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQPFDYDPN- 88 (147)
T ss_dssp CCCCSEEESSSEEEEECCSSSCCCEEEEEECC-SSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEECCCCCCTT-
T ss_pred CCCeEEECCCCeEEEeCCCCceEEEEEEEECC-CCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEECCCcCCcc-
Confidence 4789999996 999999999999999999999 5689999999999999999999999999999999999988654332
Q ss_pred CCCCCchHHHHHHhccC-CccccccccccCCCCCccceeeeec
Q 048601 80 FPRSPSDRFLIKATVFG-SADSVNSLCVTLPDGSTQDVKFKIA 121 (418)
Q Consensus 80 ~~~~~~~~~l~~a~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~ 121 (418)
....+.|++.++... +..++..++.........+.+.+..
T Consensus 89 --~~~kDKFlVqs~~~~~~~~d~~~~wk~~~~~~i~e~kLrv~ 129 (147)
T 2cri_A 89 --EKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCV 129 (147)
T ss_dssp --CCSCCCEEEEEEECCTTCCCHHHHHHHSCTTTCEEEEEEEE
T ss_pred --ccCCCEEEEEEEEcCCCcccHHHHhhcCCCCceEEEEEEEE
Confidence 234578888877654 3445666666554443344444443
No 117
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=99.52 E-value=1.9e-14 Score=110.74 Aligned_cols=104 Identities=19% Similarity=0.413 Sum_probs=85.9
Q ss_pred ccccccccc-eEEEeecCCCeeEEEEEEecCCCCCceEEEEeecCCCceeecCCCccccCCCceeEEEEecCCCCCCCCC
Q 048601 2 ERLLAVSEQ-EVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQSQIPPTF 80 (418)
Q Consensus 2 ~~l~~~~~~-~~~~~~~~~~~~~~~~~~~n~~~~~~~af~~~tt~~~k~~v~~~~gii~p~~~~~i~~~l~~~~~~p~~~ 80 (418)
+++|.++|. +|.|..++++++++.++|+|. ++.++|||++||+|.+|+|+|+.|+|.|.++..+.+.+++....|.
T Consensus 8 ~~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~-s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~~~~~~~p~-- 84 (128)
T 1z9l_A 8 EQILVLDPPSDLKFKGPFTDVVTTNLKLQNP-SDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQPFDYDPN-- 84 (128)
T ss_dssp CCCSEEESSSEEEEESCCSSCEEEEEEEECC-SSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEECCCCCCTT--
T ss_pred CCeEEECCCCeEEEcCCCCceEEEEEEEECC-CCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEECcCcCCcc--
Confidence 579999996 999999999999999999999 5689999999999999999999999999999999999988754332
Q ss_pred CCCCchHHHHHHhccC-CccccccccccCC
Q 048601 81 PRSPSDRFLIKATVFG-SADSVNSLCVTLP 109 (418)
Q Consensus 81 ~~~~~~~~l~~a~~~~-~~~~~~~l~~~~~ 109 (418)
....+.|++.++... +..++..++....
T Consensus 85 -~~~~dkF~V~s~~~~~~~~~~~~~w~~~~ 113 (128)
T 1z9l_A 85 -EKSKHKFMVQTIFAPPNISDMEAVWKEAK 113 (128)
T ss_dssp -CCCCCEEEEEEEECCTTCSCHHHHHHSCC
T ss_pred -cccCCEEEEEEEECCCCcchHHHHhhcCC
Confidence 234578888877654 3345666665543
No 118
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=99.38 E-value=5.3e-13 Score=101.79 Aligned_cols=92 Identities=13% Similarity=0.278 Sum_probs=80.0
Q ss_pred cccccccc-eEEEeecCCCeeEEEEEEecCCCCCceEEEEeecCCCceeecCCCccccCCCceeEEEEecCCCCCCCCCC
Q 048601 3 RLLAVSEQ-EVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQSQIPPTFP 81 (418)
Q Consensus 3 ~l~~~~~~-~~~~~~~~~~~~~~~~~~~n~~~~~~~af~~~tt~~~k~~v~~~~gii~p~~~~~i~~~l~~~~~~p~~~~ 81 (418)
..|+++|. +|.|+.++..+.++.++|+|. ++.++|||++||+|++|+|+|+.|+|.|.++..+.+.+++....|+.
T Consensus 7 ~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~-s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~q~~~~~~~~-- 83 (126)
T 1msp_A 7 GDINTQPSQKIVFNAPYDDKHTYHIKITNA-GGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCDTFNAATED-- 83 (126)
T ss_dssp CCEEEESSSCEEEESCCSSCCCEEEEEEEC-SSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEECCCCGGGSC--
T ss_pred CeEEEcCCCeEEEcCcCCcceEEEEEEECC-CCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEecCCCCCCCc--
Confidence 57899996 899999999999999999999 66799999999999999999999999999999999999987654433
Q ss_pred CCCchHHHHHHhccCCc
Q 048601 82 RSPSDRFLIKATVFGSA 98 (418)
Q Consensus 82 ~~~~~~~l~~a~~~~~~ 98 (418)
...+.|++.++...+.
T Consensus 84 -~~kDKf~Vq~~~~p~~ 99 (126)
T 1msp_A 84 -LNNDRITIEWTNTPDG 99 (126)
T ss_dssp -CSSCEEEEEEEECCTT
T ss_pred -cCCCEEEEEEEECCCC
Confidence 2257888888877543
No 119
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.32 E-value=1.5e-12 Score=95.83 Aligned_cols=94 Identities=14% Similarity=0.266 Sum_probs=77.4
Q ss_pred cccccceEEEeecCCCeeEEEEEEecCCCCCceEEEEeecCCCceeecCCCccccCCCceeEEEEecCCCCCCCCCCCCC
Q 048601 5 LAVSEQEVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQSQIPPTFPRSP 84 (418)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~af~~~tt~~~k~~v~~~~gii~p~~~~~i~~~l~~~~~~p~~~~~~~ 84 (418)
|.++|.+|.|.++.+ .+.++|+|. ++.++|||++||+|.+|+|||..|+|.|.++..+.++++++. ..
T Consensus 3 L~i~P~~l~F~~~~~---~~~l~L~N~-t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~q~~~--------~~ 70 (109)
T 1row_A 3 LTADPPACTVPAAGV---SSTHKLVNG-GAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRTAGA--------PK 70 (109)
T ss_dssp CEEESSSEEEETTCE---EEEEEEEEC-SSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEECSCC--------CE
T ss_pred EEEECCEeEEeCCCC---eEEEEEEcC-CCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEeCCCC--------CC
Confidence 789999999998743 689999999 667999999999999999999999999999999999999852 12
Q ss_pred chHHHHHHhccC-CccccccccccCCC
Q 048601 85 SDRFLIKATVFG-SADSVNSLCVTLPD 110 (418)
Q Consensus 85 ~~~~l~~a~~~~-~~~~~~~l~~~~~~ 110 (418)
.+.|++.++... +..+...++....+
T Consensus 71 ~dKflvq~~~~~~~~~d~~~~fk~~~~ 97 (109)
T 1row_A 71 EDKLVVHFASAPADATDAQAAFVAVAP 97 (109)
T ss_dssp EEEEEEEEEECCTTCSCHHHHHTTCCC
T ss_pred CCEEEEEEEECCCCCCCHHHHhhcCCC
Confidence 578888877764 44566777766443
No 120
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.24 E-value=8.3e-12 Score=92.10 Aligned_cols=95 Identities=19% Similarity=0.200 Sum_probs=78.7
Q ss_pred cccccccceEEEeecCCCeeEEEEEEecCCCCCceEEEEeecCCCceeecCCCccccCCCceeEEEEecCCCCCCCCCCC
Q 048601 3 RLLAVSEQEVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQSQIPPTFPR 82 (418)
Q Consensus 3 ~l~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~af~~~tt~~~k~~v~~~~gii~p~~~~~i~~~l~~~~~~p~~~~~ 82 (418)
.++.++|.++.|.++. .++.++|+|. ++.++|||++||+|.+|+|||..|+|.|.++..+.++++++.
T Consensus 9 ~~~~~~p~~l~F~~~g---g~~~l~L~N~-t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~q~~~-------- 76 (116)
T 1m1s_A 9 SMINVDPPTGNYPATG---GNSTHNITSE-SDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINRLPGP-------- 76 (116)
T ss_dssp CSEEEESSEEEECTTC---EEEEEEEEEC-SSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEECSCC--------
T ss_pred eeeecCCCeEEEecCC---CEEEEEEECC-CCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEeCCCC--------
Confidence 3678899999999874 4899999999 667999999999999999999999999999999999999872
Q ss_pred CCchHHHHHHhccC-CccccccccccCC
Q 048601 83 SPSDRFLIKATVFG-SADSVNSLCVTLP 109 (418)
Q Consensus 83 ~~~~~~l~~a~~~~-~~~~~~~l~~~~~ 109 (418)
...+.|++.++... +..+...++....
T Consensus 77 ~k~DKflVq~~~~~~d~~d~~~~fk~~~ 104 (116)
T 1m1s_A 77 PKEDKIVIQYAEVPAEETDPMAPFKAGA 104 (116)
T ss_dssp SCEEEEEEEEEEECTTCCCTTHHHHTTC
T ss_pred CCCCEEEEEEEECCCCCCCHHHHHhcCC
Confidence 12478888877765 4556677776544
No 121
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=94.39 E-value=0.2 Score=38.41 Aligned_cols=66 Identities=12% Similarity=0.230 Sum_probs=54.3
Q ss_pred cccccceEEEe-ecCCCeeEEEEEEecCCCCCceEEEEeecC------CCceeecCCCccccCCCceeEEEEec
Q 048601 5 LAVSEQEVLIN-FTLNSKCRANVRLISLCATSPVAFKVQTSS------PHKFLVNPPSGLVQPLAQTTLQIILK 71 (418)
Q Consensus 5 ~~~~~~~~~~~-~~~~~~~~~~~~~~n~~~~~~~af~~~tt~------~~k~~v~~~~gii~p~~~~~i~~~l~ 71 (418)
+.+++.++-|. ..+++..+.+++|.|. ...|..|++.... +.-+.+.|..|.|.|.++..+.+.+.
T Consensus 27 i~v~~~~ldFG~v~~~~~~~~~l~I~Nt-g~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~ 99 (140)
T 3qbt_B 27 LELSRREFVFENVKFRQLQKEKFQISNN-GQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVY 99 (140)
T ss_dssp EEESCCEEEEEEECBTCCEEEEEEEEEC-SSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEEC
T ss_pred eEeeeeeEEeeeceeeeeeeeEEEEEcC-CccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEE
Confidence 56777888887 6778888999999999 7789999998642 23466999999999999998888654
No 122
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.78 E-value=0.38 Score=35.09 Aligned_cols=70 Identities=14% Similarity=0.182 Sum_probs=54.5
Q ss_pred ccccccceEEEee-cCCCeeEEEEEEecCCCCCceEEEEeecCC---CceeecCCCccccCCCceeEEEEecCCC
Q 048601 4 LLAVSEQEVLINF-TLNSKCRANVRLISLCATSPVAFKVQTSSP---HKFLVNPPSGLVQPLAQTTLQIILKPQS 74 (418)
Q Consensus 4 l~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~af~~~tt~~---~k~~v~~~~gii~p~~~~~i~~~l~~~~ 74 (418)
.+++++.++.|.. ..++.....++++|. ...|..|+...... ..|.+.|..|.|.|..+..+++.+.+..
T Consensus 9 ~i~~~~~~ldFG~v~~g~~~~~~~~l~N~-g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~~~~ 82 (112)
T 2e6j_A 9 KIHFNFELLDIGKVFTGSAHCYEAILYNK-GSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSSII 82 (112)
T ss_dssp SEEESCSEEEEEEEESSCCEEEEEEEEEC-CSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEECCCC
T ss_pred EEEECcccEecEeEEECCEEEEEEEEEEC-CcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEEECCC
Confidence 3566777777754 456777789999999 66799999865321 3588999999999999999999888753
No 123
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.46 E-value=0.81 Score=33.96 Aligned_cols=63 Identities=14% Similarity=0.287 Sum_probs=50.7
Q ss_pred cceEEEee-cCCCeeEEEEEEecCCCCCceEEEEeecCCCceeecCCCccccCCCceeEEEEecCCC
Q 048601 9 EQEVLINF-TLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQS 74 (418)
Q Consensus 9 ~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~af~~~tt~~~k~~v~~~~gii~p~~~~~i~~~l~~~~ 74 (418)
|..+.|.. ..+.+....+.++|. .+.+..|+....+ -|.+.|..|.+.|..+..+.+...+..
T Consensus 29 p~~l~fg~~~v~~~~~~~~~l~N~-g~~~~~f~~~~~~--~F~i~P~~g~L~pg~~~~i~V~F~P~~ 92 (122)
T 2ys4_A 29 PDKLNFSTCPVKYSTQKILLVRNI-GNKNAVFHIKTCR--PFSIEPAIGTLNVGESMQLEVEFEPQS 92 (122)
T ss_dssp CSEECCCSEESSSCEEEEEEEECC-SSSCEEEEEECCT--TEEEESSEEEECTTCEEEEEEEECCSS
T ss_pred CCeeecCCeecCCeEEEEEEEEEC-CCCCEEEEEecCC--CeEEECCcCEECCCCEEEEEEEEEcCC
Confidence 34454433 456788899999998 6679999988754 699999999999999999999887764
No 124
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=88.79 E-value=1.4 Score=39.87 Aligned_cols=68 Identities=12% Similarity=0.221 Sum_probs=55.7
Q ss_pred cccccceEEEe-ecCCCeeEEEEEEecCCCCCceEEEEeecCCC------ceeecCCCccccCCCceeEEEEecCC
Q 048601 5 LAVSEQEVLIN-FTLNSKCRANVRLISLCATSPVAFKVQTSSPH------KFLVNPPSGLVQPLAQTTLQIILKPQ 73 (418)
Q Consensus 5 ~~~~~~~~~~~-~~~~~~~~~~~~~~n~~~~~~~af~~~tt~~~------k~~v~~~~gii~p~~~~~i~~~l~~~ 73 (418)
+.++++++.|. ..+++..+.++++.|+ ...|..|++...... =+.+.|..|.+.|.++..+.+.+.-.
T Consensus 30 v~v~~~~idFg~v~~~~~~~~~l~i~N~-g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v~ 104 (366)
T 3qis_A 30 LELSRREFVFENVKFRQLQKEKFQISNN-GQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVS 104 (366)
T ss_dssp EEESCSEEEEEEECBTCCEEEEEEEEEC-SSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECBC
T ss_pred EEEecCeEEeeeeeeCCeEEEEEEEEec-CCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEEC
Confidence 56778888884 7889999999999999 777999999876311 15599999999999999988877644
No 125
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=81.73 E-value=18 Score=28.65 Aligned_cols=131 Identities=16% Similarity=0.196 Sum_probs=90.5
Q ss_pred hHHHHHHHHCCCHHHHHHHHhcchhhhhcCChhhhhhhHHHHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHH
Q 048601 125 PFLLRHAVSNGDFNAVKSILKRQKMILAGLSSAEAESLYRVATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHV 204 (418)
Q Consensus 125 ~~~L~~A~~~g~~~~vk~Ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~ 204 (418)
.+=+..|+..|+++....+.+... +......+-..|.. .|+.++++.-..+--++. ..+.+
T Consensus 9 ~~rF~LAL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~--~gn~~lAe~cy~~~~D~~-----------~L~~L 69 (177)
T 3mkq_B 9 HIRFDLALEYGNLDAALDEAKKLN------DSITWERLIQEALA--QGNASLAEMIYQTQHSFD-----------KLSFL 69 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHH--TTCHHHHHHHHHHTTCHH-----------HHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHH--cCChHHHHHHHHHhCCHH-----------HHHHH
Confidence 455788999999999887765321 23456666677777 899999999988764433 35666
Q ss_pred HHHcCCHHHHHHHHhcccCCCCccCCCCCCcHHHHHHHcCCH-HHHHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHH
Q 048601 205 AAAFGRTEEISSLVRMKEYESLDCRDKEGRTPLHLAVNKTSI-GCAKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVE 283 (418)
Q Consensus 205 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~-~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~ 283 (418)
....|+.+-++.+.+... ...+...+.+.+...|.+ +++++|.+.|-- .-+...|..+|..++.+
T Consensus 70 y~~tg~~e~L~kla~iA~------~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~--------~eA~~~A~t~g~~~~a~ 135 (177)
T 3mkq_B 70 YLVTGDVNKLSKMQNIAQ------TREDFGSMLLNTFYNNSTKERSSIFAEGGSL--------PLAYAVAKANGDEAAAS 135 (177)
T ss_dssp HHHHTCHHHHHHHHHHHH------HTTCHHHHHHHHHHHTCHHHHHHHHHHTTCH--------HHHHHHHHHTTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHH------HCccHHHHHHHHHHcCCHHHHHHHHHHCCCh--------HHHHHHHHHcCcHHHHH
Confidence 677888888887754322 223345667777777874 578888775431 12455677889999998
Q ss_pred HHHHc
Q 048601 284 MLIEM 288 (418)
Q Consensus 284 ~Ll~~ 288 (418)
-+++.
T Consensus 136 ~~~~~ 140 (177)
T 3mkq_B 136 AFLEQ 140 (177)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 126
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=75.59 E-value=5.7 Score=37.59 Aligned_cols=104 Identities=13% Similarity=-0.034 Sum_probs=52.4
Q ss_pred HHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCCccCCCC-CCcHHHHHHHcCCHHH----
Q 048601 174 EDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESLDCRDKE-GRTPLHLAVNKTSIGC---- 248 (418)
Q Consensus 174 ~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~t~L~~A~~~~~~~~---- 248 (418)
.++++-+.+.|..++. .. ..+.+...+..|+.+.+..+++.-....+ ..|.. ..+.|...++.|..+-
T Consensus 90 ~~lf~~M~~~G~~Pd~----~t--yn~lI~~~~~~g~~~~A~~l~~~M~~~g~-~Pd~~tyn~lI~~~~~~g~~~~A~~l 162 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNE----AT--FTNGARLAVAKDDPEMAFDMVKQMKAFGI-QPRLRSYGPALFGFCRKGDADKAYEV 162 (501)
T ss_dssp HHHHHHHHHTTCCCCH----HH--HHHHHHHHHHHTCHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCH----HH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCccceehHHHHHHHHCCCHHHHHHH
Confidence 3466666777776554 11 12456667777888777766653321111 01111 2234455566777543
Q ss_pred HHHHHHcCCCCCCCCCCCccHHHHHHHcCCHHHHHHHH
Q 048601 249 AKVLLESGADKEAKGKDGKTSLHNAAANGDRRMVEMLI 286 (418)
Q Consensus 249 v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 286 (418)
++.+.+.|..++... ..+.+...+..|+.+-+.-++
T Consensus 163 ~~~M~~~G~~Pd~~t--y~~Li~~~~~~g~~d~A~~ll 198 (501)
T 4g26_A 163 DAHMVESEVVPEEPE--LAALLKVSMDTKNADKVYKTL 198 (501)
T ss_dssp HHHHHHTTCCCCHHH--HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhcCCCCCHHH--HHHHHHHHhhCCCHHHHHHHH
Confidence 344455676654321 123344456677765444444
No 127
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=57.70 E-value=41 Score=27.52 Aligned_cols=68 Identities=15% Similarity=0.115 Sum_probs=54.2
Q ss_pred cccccceEEEee-cCCCeeEEEEEEecCCCCCceEEEEeecCCCceeecCCCccccCCCceeEEEEecCCC
Q 048601 5 LAVSEQEVLINF-TLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQS 74 (418)
Q Consensus 5 ~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~af~~~tt~~~k~~v~~~~gii~p~~~~~i~~~l~~~~ 74 (418)
|+++++++.|.. ..+......+.++|. ...|+.++.... |..+..++..+.|.|.....+.+.+....
T Consensus 3 i~~~~~~idFg~v~~g~~~~~~~~i~N~-g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~~~~~ 71 (220)
T 2qsv_A 3 LQVSNARLLFPISMPEDEGVVRLVVNNT-DESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSLAVPR 71 (220)
T ss_dssp EEESCSEEECCSBCTTCCCEEEEEEEEC-SSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEECCCT
T ss_pred eEEecCeeEcccccCCCcceEEEEEEeC-CCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEEcchh
Confidence 577888888875 445566779999999 777999998766 66666788889999999988888887654
No 128
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=51.90 E-value=12 Score=20.86 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=15.9
Q ss_pred HHHHHHHCCCHHHHHHHHh
Q 048601 127 LLRHAVSNGDFNAVKSILK 145 (418)
Q Consensus 127 ~L~~A~~~g~~~~vk~Ll~ 145 (418)
-+..||..|+++.++.|-.
T Consensus 16 qiyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 16 QMDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHH
Confidence 4778999999999988853
No 129
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=50.77 E-value=68 Score=26.18 Aligned_cols=67 Identities=16% Similarity=0.264 Sum_probs=51.8
Q ss_pred cccccceEEEeecCCCeeEEEEEEecCCCCCceEEEEeecCCCceeecCCCccccCCCceeEEEEecCC
Q 048601 5 LAVSEQEVLINFTLNSKCRANVRLISLCATSPVAFKVQTSSPHKFLVNPPSGLVQPLAQTTLQIILKPQ 73 (418)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~af~~~tt~~~k~~v~~~~gii~p~~~~~i~~~l~~~ 73 (418)
++++ .++.|..-.+......++++|. .+.|+.+.--.++-....+......|.|..+..+.+.+...
T Consensus 120 i~~~-~~~dfG~i~g~~~~~~f~i~N~-G~~pL~I~~v~~scgct~~~~~~~~i~PGe~~~i~v~~~~~ 186 (220)
T 2qsv_A 120 MELS-TYLDMGQLDGETTKAAIEIRNV-GAGPLRLHSVTTRNPALTAVPDRTEIKPGGSTLLRIAVDPQ 186 (220)
T ss_dssp EECC-CEEEEEECTTSCEEEEEEEEEC-SSSCEEEEEEEECSTTEEEEESCSEECTTCEEEEEEEECHH
T ss_pred EEEE-eEEeeeccCCCeEEEEEEEEEC-CCCCEEEEEEEeCCCCEeeecCCccCCCCCEEEEEEEEecC
Confidence 4566 6777774448889999999999 77799985555556677788888899999999999887643
No 130
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=24.64 E-value=49 Score=29.36 Aligned_cols=196 Identities=10% Similarity=0.133 Sum_probs=93.7
Q ss_pred hHHHHHHhccCCccccccccccCCCCCccceeeeecccchHHHHHHHHCCCHHHHHHHHhcch-hhhhcCChhhhhhhHH
Q 048601 86 DRFLIKATVFGSADSVNSLCVTLPDGSTQDVKFKIAFVGPFLLRHAVSNGDFNAVKSILKRQK-MILAGLSSAEAESLYR 164 (418)
Q Consensus 86 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~L~~A~~~g~~~~vk~Ll~~~~-~~~~~~~~~~~~~~l~ 164 (418)
.+++-.....++.+....++..+.+.. ...-.+..|...+......|+.+....+++.-. .+..-.....|...+.
T Consensus 38 sR~lQ~~l~~~~~~~~~~i~~ei~~~~---~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQ 114 (351)
T 3gvo_A 38 SRFIQQKLERATPAERQIVFNEILQAA---YQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQ 114 (351)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHGGGH---HHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHH
T ss_pred hHHHHHHHhhCCHHHHHHHHHHHHHhH---HHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHH
Confidence 456666666676666666665554321 112244567788888888888777766665321 1111112233444444
Q ss_pred HHHHHhhCCHHHHHHHHHcCCCCcccccccCCCCchHHHHHHHcCCHHHHHHHHhcccCCCC-ccCCCCCCcHHHHHHHc
Q 048601 165 VATELAANSEDMVSLLLRAGLSIEIDERVKTKDGWSELHVAAAFGRTEEISSLVRMKEYESL-DCRDKEGRTPLHLAVNK 243 (418)
Q Consensus 165 ~a~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~~~~~t~L~~A~~~ 243 (418)
.+.. ....+-...+++. ...+......|..|...+......+..+....+++...+... -..+..|...+..+...
T Consensus 115 k~le--~~~~~~~~~i~~e-l~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~ 191 (351)
T 3gvo_A 115 KALE--SISSDQQSEMVKE-LDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEH 191 (351)
T ss_dssp HHHH--HSCHHHHHHHHGG-GTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHH
T ss_pred HHHH--hCCHHHHHHHHHH-hhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHH
Confidence 4444 3333333333321 122222223556666666666665555544444433221100 11344455555544444
Q ss_pred CCHHHHHHHHHc---CCCCCCCCCCCccHHHHHHHcCCHHHHHHHHH
Q 048601 244 TSIGCAKVLLES---GADKEAKGKDGKTSLHNAAANGDRRMVEMLIE 287 (418)
Q Consensus 244 ~~~~~v~~Ll~~---~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 287 (418)
...+-...+++. ....-..|.+|.-.+..+...+..+..+.+++
T Consensus 192 ~~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~ 238 (351)
T 3gvo_A 192 CTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVS 238 (351)
T ss_dssp SCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhCchhhHHHHHH
Confidence 443222222211 11111345666667777777776666666655
Done!