Query 048602
Match_columns 176
No_of_seqs 112 out of 343
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 11:05:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048602.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048602hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01190 Pollen_Ole_e_I: Polle 100.0 3.7E-28 8E-33 176.6 10.5 96 34-132 1-97 (97)
2 PF13620 CarboxypepD_reg: Carb 96.3 0.0061 1.3E-07 41.6 4.1 46 34-94 2-48 (82)
3 PF11974 MG1: Alpha-2-macroglo 96.2 0.0077 1.7E-07 43.7 4.1 40 49-92 20-60 (97)
4 PF13715 DUF4480: Domain of un 95.7 0.033 7.3E-07 38.6 5.7 33 54-94 12-44 (88)
5 PF01060 DUF290: Transthyretin 95.5 0.048 1E-06 38.0 5.6 48 35-94 1-48 (80)
6 PF10670 DUF4198: Domain of un 92.1 0.23 4.9E-06 39.6 4.3 41 54-94 161-202 (215)
7 PRK15036 hydroxyisourate hydro 91.3 1.2 2.6E-05 34.4 7.3 49 33-92 28-76 (137)
8 PF07210 DUF1416: Protein of u 91.2 1.4 3.1E-05 31.4 6.9 60 28-112 4-63 (85)
9 PF05738 Cna_B: Cna protein B- 89.0 0.69 1.5E-05 30.5 3.8 32 57-90 1-32 (70)
10 PF08400 phage_tail_N: Prophag 88.5 1.3 2.8E-05 34.2 5.4 43 53-95 13-57 (134)
11 cd03858 M14_CP_N-E_like Carbox 88.0 1.1 2.4E-05 39.6 5.4 43 33-94 299-341 (374)
12 cd03866 M14_CPM Peptidase M14 85.2 2.2 4.8E-05 38.1 5.8 46 32-94 295-340 (376)
13 COG5266 CbiK ABC-type Co2+ tra 84.5 1.9 4.1E-05 36.8 4.8 41 54-94 182-231 (264)
14 TIGR02438 catachol_actin catec 84.1 4.9 0.00011 34.8 7.2 51 29-90 130-190 (281)
15 PF15240 Pro-rich: Proline-ric 83.7 0.59 1.3E-05 37.8 1.4 14 4-17 1-15 (179)
16 PF00775 Dioxygenase_C: Dioxyg 83.5 2.8 6.1E-05 33.8 5.3 53 27-90 25-89 (183)
17 cd03464 3,4-PCD_beta Protocate 83.2 6.5 0.00014 32.8 7.4 51 29-90 63-128 (220)
18 cd03463 3,4-PCD_alpha Protocat 83.1 6.6 0.00014 31.8 7.3 51 29-90 34-98 (185)
19 cd03459 3,4-PCD Protocatechuat 82.7 7.4 0.00016 30.7 7.3 52 28-90 12-78 (158)
20 cd00421 intradiol_dioxygenase 82.4 7.1 0.00015 30.0 7.0 52 28-90 8-71 (146)
21 TIGR02422 protocat_beta protoc 81.7 8.1 0.00018 32.2 7.4 51 29-90 58-123 (220)
22 PF07172 GRP: Glycine rich pro 80.2 1.8 3.9E-05 31.5 2.7 21 2-22 6-26 (95)
23 cd03863 M14_CPD_II The second 79.1 3.6 7.9E-05 36.8 4.9 45 32-94 297-341 (375)
24 TIGR02465 chlorocat_1_2 chloro 77.6 10 0.00022 32.2 6.8 50 30-90 97-156 (246)
25 TIGR02423 protocat_alph protoc 77.4 12 0.00025 30.6 7.0 51 29-90 37-102 (193)
26 cd03462 1,2-CCD chlorocatechol 76.7 11 0.00024 31.9 6.9 50 30-90 98-157 (247)
27 TIGR02962 hdxy_isourate hydrox 76.3 7.2 0.00016 29.1 5.1 39 53-92 12-50 (112)
28 COG3485 PcaH Protocatechuate 3 75.9 13 0.00028 31.2 7.0 50 30-90 71-134 (226)
29 TIGR02439 catechol_proteo cate 74.5 14 0.00031 31.9 7.1 51 29-90 126-186 (285)
30 cd03865 M14_CPE_H Peptidase M1 74.5 5.2 0.00011 36.2 4.6 43 33-94 327-369 (402)
31 PF02369 Big_1: Bacterial Ig-l 74.3 3 6.6E-05 30.0 2.5 41 54-94 36-77 (100)
32 cd03461 1,2-HQD Hydroxyquinol 72.9 16 0.00034 31.6 6.9 50 30-90 119-178 (277)
33 KOG1948 Metalloproteinase-rela 71.8 5.9 0.00013 39.4 4.5 41 32-91 316-356 (1165)
34 cd03460 1,2-CTD Catechol 1,2 d 70.1 19 0.00042 31.1 6.9 51 29-90 122-182 (282)
35 cd03867 M14_CPZ Peptidase M14- 69.3 10 0.00022 34.1 5.2 42 33-93 319-360 (395)
36 cd03868 M14_CPD_I The first ca 68.8 9.6 0.00021 33.8 5.0 42 33-93 297-338 (372)
37 cd03458 Catechol_intradiol_dio 67.9 22 0.00048 30.3 6.7 51 29-90 102-162 (256)
38 cd06245 M14_CPD_III The third 63.9 16 0.00034 32.5 5.3 43 32-94 287-329 (363)
39 PF08194 DIM: DIM protein; In 63.2 8.2 0.00018 23.2 2.3 13 29-43 23-35 (36)
40 PF13717 zinc_ribbon_4: zinc-r 62.7 6.3 0.00014 23.4 1.8 29 37-68 2-30 (36)
41 PF13115 YtkA: YtkA-like 60.7 48 0.001 22.4 6.3 43 52-94 30-76 (86)
42 cd03864 M14_CPN Peptidase M14 59.2 15 0.00033 33.0 4.4 39 32-90 316-354 (392)
43 COG4850 Uncharacterized conser 58.6 17 0.00037 32.4 4.4 35 54-93 93-127 (373)
44 TIGR03361 VI_Rhs_Vgr type VI s 58.3 27 0.00059 32.0 6.0 50 57-112 358-407 (513)
45 KOG1691 emp24/gp25L/p24 family 49.3 1E+02 0.0022 25.7 7.3 62 29-108 40-101 (210)
46 PF14054 DUF4249: Domain of un 47.4 85 0.0018 26.1 6.9 41 30-71 26-74 (298)
47 cd03457 intradiol_dioxygenase_ 46.8 87 0.0019 25.3 6.6 52 28-90 23-92 (188)
48 PF10794 DUF2606: Protein of u 46.4 99 0.0021 23.7 6.3 40 52-92 51-95 (131)
49 PF10648 Gmad2: Immunoglobulin 41.9 1E+02 0.0022 21.8 5.6 53 26-95 12-68 (88)
50 PF00576 Transthyretin: HIUase 41.4 35 0.00077 25.3 3.3 36 53-88 12-47 (112)
51 PF01835 A2M_N: MG2 domain; I 40.9 77 0.0017 21.9 4.9 71 29-111 14-85 (99)
52 COG5341 Uncharacterized protei 40.4 25 0.00055 26.9 2.3 34 4-40 18-51 (132)
53 smart00634 BID_1 Bacterial Ig- 39.0 61 0.0013 22.5 4.1 41 53-94 30-71 (92)
54 cd05822 TLP_HIUase HIUase (5-h 37.0 1E+02 0.0023 22.9 5.2 55 53-111 12-66 (112)
55 KOG1948 Metalloproteinase-rela 34.4 75 0.0016 32.1 5.0 57 29-90 895-951 (1165)
56 TIGR01646 vgr_GE Rhs element V 32.9 1E+02 0.0023 27.9 5.6 34 78-111 362-395 (483)
57 cd05469 Transthyretin_like Tra 31.5 1E+02 0.0022 23.0 4.4 39 53-92 12-51 (113)
58 TIGR02174 CXXU_selWTH selT/sel 31.4 52 0.0011 22.1 2.6 45 37-94 3-50 (72)
59 PF10262 Rdx: Rdx family; Int 29.8 35 0.00076 23.1 1.5 43 36-95 4-53 (76)
60 PF07245 Phlebovirus_G2: Phleb 28.4 1.3E+02 0.0027 28.3 5.3 55 57-119 353-409 (507)
61 PF08261 Carcinustatin: Carcin 27.8 20 0.00044 14.5 0.0 6 148-153 1-6 (8)
62 cd05821 TLP_Transthyretin Tran 26.3 1.3E+02 0.0028 22.8 4.2 35 53-88 18-53 (121)
63 smart00095 TR_THY Transthyreti 25.7 1.4E+02 0.0029 22.7 4.2 35 53-88 15-50 (121)
64 PRK09934 fimbrial-like adhesin 23.5 1.3E+02 0.0028 23.4 3.9 43 1-46 1-43 (171)
65 TIGR02098 MJ0042_CXXC MJ0042 f 23.4 48 0.001 19.2 1.1 30 38-70 3-32 (38)
66 PRK15263 putative fimbrial pro 22.9 67 0.0015 25.9 2.2 41 5-45 2-42 (196)
67 PRK10894 lipopolysaccharide tr 22.9 1.5E+02 0.0033 23.3 4.3 20 2-22 4-23 (180)
68 PRK15300 fimbrial protein StiA 22.8 1.3E+02 0.0029 23.4 3.9 19 28-46 27-45 (179)
69 PRK09125 DNA ligase; Provision 22.8 52 0.0011 28.1 1.6 19 2-20 6-24 (282)
70 PF11781 RRN7: RNA polymerase 22.0 33 0.00071 20.4 0.2 14 32-45 20-33 (36)
71 PF03785 Peptidase_C25_C: Pept 21.9 2.1E+02 0.0045 20.3 4.2 41 54-95 11-57 (81)
72 PF15284 PAGK: Phage-encoded v 21.6 1.3E+02 0.0028 20.2 2.9 17 10-26 15-31 (61)
73 PF14686 fn3_3: Polysaccharide 21.4 57 0.0012 23.4 1.4 14 77-90 42-55 (95)
74 PF15339 Afaf: Acrosome format 21.0 74 0.0016 25.9 2.0 16 2-17 137-152 (200)
75 PF15330 SIT: SHP2-interacting 20.2 86 0.0019 23.2 2.1 14 100-113 90-103 (107)
No 1
>PF01190 Pollen_Ole_e_I: Pollen proteins Ole e I like; InterPro: IPR006041 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ole e 1. A number of plant pollen proteins, whose biological function is not yet known, are structurally related []. These proteins are most probably secreted and consist of about 145 residues. There are six cysteines which are conserved in the sequence of these proteins. They seem to be involved in disulphide bonds.
Probab=99.95 E-value=3.7e-28 Score=176.62 Aligned_cols=96 Identities=33% Similarity=0.589 Sum_probs=86.3
Q ss_pred EEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEccccccC-CCcccceEEEEccC
Q 048602 34 VGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRIINGK-ELKAKLCSVRLVSS 112 (176)
Q Consensus 34 V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~~~~~~-~~~~~~C~v~L~sS 112 (176)
|+|+||||+|+++ .. ..++||+||+|+|+|+++++.+.+.++++||++|+|+|+||....+. .+..+.|+|+|++|
T Consensus 1 V~G~V~C~~C~~~-~~--~~~~~l~GA~V~v~C~~~~~~~~~~~~~~Td~~G~F~i~l~~~~~~~~~~~~~~C~v~l~~s 77 (97)
T PF01190_consen 1 VEGVVYCDDCSSG-FS--RAAKPLPGAKVSVECKDGNGGVVFSAEAKTDENGYFSIELPSDPGSSSPHLSSSCRVKLVSS 77 (97)
T ss_pred CEEEEEeCCCCCC-cc--ccCccCCCCEEEEECCCCCCCcEEEEEEEeCCCCEEEEEecCccccccCCCCCCcEEEEeCC
Confidence 7999999999994 33 78899999999999999887777789999999999999999875432 46799999999999
Q ss_pred CCcCCcccccCCCCccccee
Q 048602 113 THADCSIATNFAGGKTGVKL 132 (176)
Q Consensus 113 p~~~C~~~t~~n~g~sg~~L 132 (176)
|++.|+++++.|+|++|++|
T Consensus 78 p~~~C~~~~~~~~G~~ga~l 97 (97)
T PF01190_consen 78 PDPSCNVPTNSNGGRTGAKL 97 (97)
T ss_pred CcCcCCCCcCCCCCccCCcC
Confidence 99999999999999999986
No 2
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=96.33 E-value=0.0061 Score=41.56 Aligned_cols=46 Identities=28% Similarity=0.408 Sum_probs=30.5
Q ss_pred EEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEE-Eccc
Q 048602 34 VGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMT-VDRI 94 (176)
Q Consensus 34 V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~-l~~~ 94 (176)
|.|+|.=. ...||+||.|.|.-.+... .....||++|.|.++ +|..
T Consensus 2 I~G~V~d~-----------~g~pv~~a~V~l~~~~~~~----~~~~~Td~~G~f~~~~l~~g 48 (82)
T PF13620_consen 2 ISGTVTDA-----------TGQPVPGATVTLTDQDGGT----VYTTTTDSDGRFSFEGLPPG 48 (82)
T ss_dssp EEEEEEET-----------TSCBHTT-EEEET--TTTE----CCEEE--TTSEEEEEEE-SE
T ss_pred EEEEEEcC-----------CCCCcCCEEEEEEEeeCCC----EEEEEECCCceEEEEccCCE
Confidence 67888753 2389999999998765432 267899999999998 7764
No 3
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=96.17 E-value=0.0077 Score=43.74 Aligned_cols=40 Identities=23% Similarity=0.350 Sum_probs=31.6
Q ss_pred cccCCCccCCCCEEEEEecC-CCCceEEEEEeEcCCCceEEEEEc
Q 048602 49 EWVNGSNPLKGVTVSLTCMD-DRSRAMCYKSDETDEQGQFYMTVD 92 (176)
Q Consensus 49 ~~~~~s~pi~GA~V~v~C~~-~~~~~~~~~~~~TD~~G~F~i~l~ 92 (176)
+.+....|++||+|+|- + .++++. .+++||++|...++..
T Consensus 20 ~~L~tg~Pv~ga~V~l~--~~~~~~~l--~~g~TD~~G~a~~~~~ 60 (97)
T PF11974_consen 20 TSLSTGKPVAGAEVELY--DSRNGQVL--ASGKTDADGFASFDST 60 (97)
T ss_pred eeCCCCCccCCCEEEEE--ECCCCcEe--eeeeeCCCceEEecCC
Confidence 45677899999999994 3 344444 7999999999998765
No 4
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=95.75 E-value=0.033 Score=38.56 Aligned_cols=33 Identities=36% Similarity=0.518 Sum_probs=26.7
Q ss_pred CccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEccc
Q 048602 54 SNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRI 94 (176)
Q Consensus 54 s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~~ 94 (176)
..||+||.|.+.=.+ ....||++|.|.|.++..
T Consensus 12 ~~pl~~a~V~~~~~~--------~~~~Td~~G~F~i~~~~g 44 (88)
T PF13715_consen 12 GEPLPGATVYLKNTK--------KGTVTDENGRFSIKLPEG 44 (88)
T ss_pred CCCccCeEEEEeCCc--------ceEEECCCeEEEEEEcCC
Confidence 489999999987222 467899999999998754
No 5
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=95.48 E-value=0.048 Score=38.02 Aligned_cols=48 Identities=27% Similarity=0.347 Sum_probs=35.9
Q ss_pred EEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEccc
Q 048602 35 GGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRI 94 (176)
Q Consensus 35 ~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~~ 94 (176)
.|+..|.. .|++|++|+|-=++....-....+..||++|+|.|.=...
T Consensus 1 ~G~L~C~~------------~P~~~~~V~L~e~d~~~~Ddll~~~~Td~~G~F~l~G~~~ 48 (80)
T PF01060_consen 1 KGQLMCGG------------KPAKNVKVKLWEDDYFDPDDLLDETKTDSDGNFELSGSTN 48 (80)
T ss_pred CeEEEeCC------------ccCCCCEEEEEECCCCCCCceeEEEEECCCceEEEEEEcc
Confidence 37888854 8999999999988863211123789999999999975443
No 6
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=92.14 E-value=0.23 Score=39.58 Aligned_cols=41 Identities=24% Similarity=0.229 Sum_probs=32.7
Q ss_pred CccCCCCEEEEEecCCCCce-EEEEEeEcCCCceEEEEEccc
Q 048602 54 SNPLKGVTVSLTCMDDRSRA-MCYKSDETDEQGQFYMTVDRI 94 (176)
Q Consensus 54 s~pi~GA~V~v~C~~~~~~~-~~~~~~~TD~~G~F~i~l~~~ 94 (176)
.+|++||+|.+.-.+..... ....+.+||++|.+.|.++..
T Consensus 161 GkPl~~a~V~~~~~~~~~~~~~~~~~~~TD~~G~~~~~~~~~ 202 (215)
T PF10670_consen 161 GKPLAGAEVEAFSPGGWYDVEHEAKTLKTDANGRATFTLPRP 202 (215)
T ss_pred CeEcccEEEEEEECCCccccccceEEEEECCCCEEEEecCCC
Confidence 38999999999999865321 114689999999999998764
No 7
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=91.26 E-value=1.2 Score=34.39 Aligned_cols=49 Identities=22% Similarity=0.266 Sum_probs=34.7
Q ss_pred EEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEc
Q 048602 33 HVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVD 92 (176)
Q Consensus 33 ~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~ 92 (176)
.|.|.|.=- ....|.+|++|+|+=.+.++... ..++.||++|.|...++
T Consensus 28 ~Is~HVLDt----------~~G~PA~gV~V~L~~~~~~~w~~-l~~~~Td~dGR~~~l~~ 76 (137)
T PRK15036 28 ILSVHILNQ----------QTGKPAADVTVTLEKKADNGWLQ-LNTAKTDKDGRIKALWP 76 (137)
T ss_pred CeEEEEEeC----------CCCcCCCCCEEEEEEccCCceEE-EEEEEECCCCCCccccC
Confidence 377777632 34589999999997554433333 37999999999976444
No 8
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=91.16 E-value=1.4 Score=31.44 Aligned_cols=60 Identities=20% Similarity=0.219 Sum_probs=43.7
Q ss_pred CCCceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEccccccCCCcccceEE
Q 048602 28 SAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRIINGKELKAKLCSV 107 (176)
Q Consensus 28 ~~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~~~~~~~~~~~~C~v 107 (176)
.....+|+|+|. .+ ..|++||-|+|-=.. ++. .+|-.|++.|.|+.-... ....+
T Consensus 4 ~~ke~VItG~V~-~~-----------G~Pv~gAyVRLLD~s--gEF--taEvvts~~G~FRFfaap---------G~Wtv 58 (85)
T PF07210_consen 4 VEKETVITGRVT-RD-----------GEPVGGAYVRLLDSS--GEF--TAEVVTSATGDFRFFAAP---------GSWTV 58 (85)
T ss_pred ccceEEEEEEEe-cC-----------CcCCCCeEEEEEcCC--CCe--EEEEEecCCccEEEEeCC---------CceEE
Confidence 345689999998 22 289999999997443 443 589999999999975433 44677
Q ss_pred EEccC
Q 048602 108 RLVSS 112 (176)
Q Consensus 108 ~L~sS 112 (176)
+.++.
T Consensus 59 Ral~~ 63 (85)
T PF07210_consen 59 RALSR 63 (85)
T ss_pred EEEcc
Confidence 76654
No 9
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=89.01 E-value=0.69 Score=30.50 Aligned_cols=32 Identities=28% Similarity=0.333 Sum_probs=24.2
Q ss_pred CCCCEEEEEecCCCCceEEEEEeEcCCCceEEEE
Q 048602 57 LKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMT 90 (176)
Q Consensus 57 i~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~ 90 (176)
|+||++.|.-.+...... .+..||++|.|.+.
T Consensus 1 L~Ga~f~L~~~~~~~~~~--~~~~Td~~G~~~f~ 32 (70)
T PF05738_consen 1 LAGATFELYDEDGNEVIE--VTVTTDENGKYTFK 32 (70)
T ss_dssp -STEEEEEEETTSEEEEE--EEEEGGTTSEEEEE
T ss_pred CCCeEEEEEECCCCEEEE--EEEEECCCCEEEEe
Confidence 689999999887653221 26899999999986
No 10
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=88.50 E-value=1.3 Score=34.23 Aligned_cols=43 Identities=23% Similarity=0.378 Sum_probs=34.7
Q ss_pred CCccCCCCEEEEEecCCCCceE--EEEEeEcCCCceEEEEEcccc
Q 048602 53 GSNPLKGVTVSLTCMDDRSRAM--CYKSDETDEQGQFYMTVDRII 95 (176)
Q Consensus 53 ~s~pi~GA~V~v~C~~~~~~~~--~~~~~~TD~~G~F~i~l~~~~ 95 (176)
..+|++|+...|.=+.....++ +.+...||+.|+|.+++..-.
T Consensus 13 ~G~pv~g~~I~L~A~~tS~~Vv~~t~as~~t~~~G~Ys~~~epG~ 57 (134)
T PF08400_consen 13 AGKPVPGCTITLKARRTSSTVVVGTVASVVTGEAGEYSFDVEPGV 57 (134)
T ss_pred CCCcCCCCEEEEEEccCchheEEEEEEEEEcCCCceEEEEecCCe
Confidence 3489999999999998775433 457889999999999986653
No 11
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=88.01 E-value=1.1 Score=39.63 Aligned_cols=43 Identities=23% Similarity=0.282 Sum_probs=33.0
Q ss_pred EEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEccc
Q 048602 33 HVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRI 94 (176)
Q Consensus 33 ~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~~ 94 (176)
.|.|+|.-.+ ..||+||+|.|+ +. .....||.+|.|.+.+|..
T Consensus 299 ~i~G~V~d~~-----------g~pl~~A~V~i~--~~------~~~~~Td~~G~f~~~l~~G 341 (374)
T cd03858 299 GIKGFVRDAN-----------GNPIANATISVE--GI------NHDVTTAEDGDYWRLLLPG 341 (374)
T ss_pred ceEEEEECCC-----------CCccCCeEEEEe--cc------eeeeEECCCceEEEecCCE
Confidence 7899998742 279999999993 11 2467899999999987643
No 12
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=85.20 E-value=2.2 Score=38.08 Aligned_cols=46 Identities=22% Similarity=0.413 Sum_probs=32.4
Q ss_pred eEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEccc
Q 048602 32 IHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRI 94 (176)
Q Consensus 32 v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~~ 94 (176)
..|.|.|. |. . ..||+||+|.|+ +.+ . .....||++|.|.+.++..
T Consensus 295 ~gI~G~V~-D~---------~-g~pi~~A~V~v~--g~~-~---~~~~~T~~~G~y~~~l~pG 340 (376)
T cd03866 295 LGVKGQVF-DS---------N-GNPIPNAIVEVK--GRK-H---ICPYRTNVNGEYFLLLLPG 340 (376)
T ss_pred CceEEEEE-CC---------C-CCccCCeEEEEE--cCC-c---eeEEEECCCceEEEecCCe
Confidence 36899998 43 1 279999999997 221 1 1345799999997766543
No 13
>COG5266 CbiK ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=84.54 E-value=1.9 Score=36.85 Aligned_cols=41 Identities=17% Similarity=0.166 Sum_probs=29.3
Q ss_pred CccCCCCEEEEEecCC--------C-CceEEEEEeEcCCCceEEEEEccc
Q 048602 54 SNPLKGVTVSLTCMDD--------R-SRAMCYKSDETDEQGQFYMTVDRI 94 (176)
Q Consensus 54 s~pi~GA~V~v~C~~~--------~-~~~~~~~~~~TD~~G~F~i~l~~~ 94 (176)
.+||+||+|.++-.+. . .+..-..+..||.+|+|.+..+..
T Consensus 182 GkPv~nA~V~v~~~n~~~~d~~a~~~~~ek~~~~~~TD~kG~~~fip~r~ 231 (264)
T COG5266 182 GKPVPNATVEVEFDNIDTKDNRAKTGNTEKTALVQFTDDKGEVSFIPLRA 231 (264)
T ss_pred CccCCCcEEEEEEecccccccccccCCCCCcceEEEcCCCceEEEEEccC
Confidence 4899999999995441 1 122224688999999999875543
No 14
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=84.09 E-value=4.9 Score=34.76 Aligned_cols=51 Identities=27% Similarity=0.283 Sum_probs=36.3
Q ss_pred CCceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCce----------EEEEEeEcCCCceEEEE
Q 048602 29 AGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRA----------MCYKSDETDEQGQFYMT 90 (176)
Q Consensus 29 ~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~----------~~~~~~~TD~~G~F~i~ 90 (176)
...+.|+|.|. |. .-.||+||.|.|=.-+.+|.- -+.....||++|.|.+.
T Consensus 130 G~pl~v~G~V~-D~----------~G~Pv~gA~VdiWqada~G~Ys~~~~~~~~~~lRGr~~TDadG~y~F~ 190 (281)
T TIGR02438 130 GTPLVFSGQVT-DL----------DGNGLAGAKVELWHADDDGFYSQFAPGIPEWNLRGTIIADDEGRFEIT 190 (281)
T ss_pred CCEEEEEEEEE-cC----------CCCCcCCCEEEEEecCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEE
Confidence 34588999998 32 127999999999555544321 13577889999998875
No 15
>PF15240 Pro-rich: Proline-rich
Probab=83.70 E-value=0.59 Score=37.81 Aligned_cols=14 Identities=29% Similarity=0.325 Sum_probs=9.3
Q ss_pred HHHHHH-HHHHHHHh
Q 048602 4 MALMLS-AAFFMGCT 17 (176)
Q Consensus 4 ~~~~l~-~s~~~~~~ 17 (176)
|||||| |+||+|||
T Consensus 1 MLlVLLSvALLALSS 15 (179)
T PF15240_consen 1 MLLVLLSVALLALSS 15 (179)
T ss_pred ChhHHHHHHHHHhhh
Confidence 444555 88888875
No 16
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=83.53 E-value=2.8 Score=33.79 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=36.4
Q ss_pred CCCCceEEEEEEEcccCCCCCccccCCCccCCCCEEEE-EecCCC-------C----ceEEEEEeEcCCCceEEEE
Q 048602 27 ASAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSL-TCMDDR-------S----RAMCYKSDETDEQGQFYMT 90 (176)
Q Consensus 27 ~~~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v-~C~~~~-------~----~~~~~~~~~TD~~G~F~i~ 90 (176)
++...+.|.|.|.=.+| .||+||.|.| +|.... + ...+.....||++|.|.+.
T Consensus 25 ~~G~~l~l~G~V~D~~g-----------~Pv~~A~veiWqada~G~Ys~~~~~~~~~~~~~rG~~~Td~~G~y~f~ 89 (183)
T PF00775_consen 25 APGEPLVLHGRVIDTDG-----------KPVPGALVEIWQADADGRYSGQDPGSDQPDFNLRGRFRTDADGRYSFR 89 (183)
T ss_dssp SSS-EEEEEEEEEETTS-----------SB-TTEEEEEEE--TTS--TTTBTTSSSSTTTTEEEEEECTTSEEEEE
T ss_pred CCCCEEEEEEEEECCCC-----------CCCCCcEEEEEecCCCCccccccccccccCCCcceEEecCCCCEEEEE
Confidence 45568999999995444 7999999999 887542 1 1124578889999999764
No 17
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=83.20 E-value=6.5 Score=32.76 Aligned_cols=51 Identities=22% Similarity=0.240 Sum_probs=37.1
Q ss_pred CCceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCce---------------EEEEEeEcCCCceEEEE
Q 048602 29 AGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRA---------------MCYKSDETDEQGQFYMT 90 (176)
Q Consensus 29 ~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~---------------~~~~~~~TD~~G~F~i~ 90 (176)
...+.|+|.|.=.+| .||+||.|.|=--+..|.- ..+....||++|.|.+.
T Consensus 63 G~~i~l~G~V~D~~G-----------~PV~~A~VEIWQad~~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~ 128 (220)
T cd03464 63 GERIIVHGRVLDEDG-----------RPVPNTLVEIWQANAAGRYRHKRDQHDAPLDPNFGGAGRTLTDDDGYYRFR 128 (220)
T ss_pred CCEEEEEEEEECCCC-----------CCCCCCEEEEEecCCCCcccCccCCcccccCCCCCCEEEEEECCCccEEEE
Confidence 345999999994333 7999999999776654311 12456689999998885
No 18
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=83.06 E-value=6.6 Score=31.79 Aligned_cols=51 Identities=22% Similarity=0.327 Sum_probs=37.2
Q ss_pred CCceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCc------------eEE--EEEeEcCCCceEEEE
Q 048602 29 AGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSR------------AMC--YKSDETDEQGQFYMT 90 (176)
Q Consensus 29 ~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~------------~~~--~~~~~TD~~G~F~i~ 90 (176)
...+.|+|.|.=.+ -.||+||.|.|=.-+.+|. ..+ +....||++|.|.+.
T Consensus 34 G~~l~l~G~V~D~~-----------g~Pi~gA~VeiWqad~~G~Y~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~ 98 (185)
T cd03463 34 GERITLEGRVYDGD-----------GAPVPDAMLEIWQADAAGRYAHPADSRRRLDPGFRGFGRVATDADGRFSFT 98 (185)
T ss_pred CCEEEEEEEEECCC-----------CCCCCCCEEEEEcCCCCCccCCcCCcccccCCCCCcEEEEEECCCCCEEEE
Confidence 46799999999322 2799999999977766531 112 345679999999885
No 19
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=82.75 E-value=7.4 Score=30.66 Aligned_cols=52 Identities=21% Similarity=0.255 Sum_probs=38.1
Q ss_pred CCCceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCce-------------E--EEEEeEcCCCceEEEE
Q 048602 28 SAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRA-------------M--CYKSDETDEQGQFYMT 90 (176)
Q Consensus 28 ~~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~-------------~--~~~~~~TD~~G~F~i~ 90 (176)
+...+.|+|.|.=.+| .||+||.|.|=--+..|.- . .+....||++|.|.+.
T Consensus 12 ~G~~l~l~g~V~D~~g-----------~Pv~~A~veiWqad~~G~Y~~~~~~~~~~~~~~f~~rG~~~Td~~G~~~f~ 78 (158)
T cd03459 12 IGERIILEGRVLDGDG-----------RPVPDALVEIWQADAAGRYRHPRDSHRAPLDPNFTGFGRVLTDADGRYRFR 78 (158)
T ss_pred CCcEEEEEEEEECCCC-----------CCCCCCEEEEEccCCCCccCCccCCcccccCCCCCceeEEEECCCCcEEEE
Confidence 3467999999994333 7999999999776654311 1 1356789999999985
No 20
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=82.43 E-value=7.1 Score=30.05 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=38.8
Q ss_pred CCCceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCc------------eEEEEEeEcCCCceEEEE
Q 048602 28 SAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSR------------AMCYKSDETDEQGQFYMT 90 (176)
Q Consensus 28 ~~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~------------~~~~~~~~TD~~G~F~i~ 90 (176)
+...+.|.|.|.=.+ ..|++||.|.|---+..|. ........||++|.|.+.
T Consensus 8 ~G~~l~l~G~V~D~~-----------g~pv~~A~VeiW~~d~~G~Y~~~~~~~~~~~~~~rg~~~Td~~G~y~f~ 71 (146)
T cd00421 8 PGEPLTLTGTVLDGD-----------GCPVPDALVEIWQADADGRYSGQDDSGLDPEFFLRGRQITDADGRYRFR 71 (146)
T ss_pred CCCEEEEEEEEECCC-----------CCCCCCcEEEEEecCCCCccCCcCccccCCCCCCEEEEEECCCcCEEEE
Confidence 345789999999433 2789999999987776431 123567899999999985
No 21
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=81.65 E-value=8.1 Score=32.20 Aligned_cols=51 Identities=22% Similarity=0.225 Sum_probs=36.9
Q ss_pred CCceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCce---------------EEEEEeEcCCCceEEEE
Q 048602 29 AGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRA---------------MCYKSDETDEQGQFYMT 90 (176)
Q Consensus 29 ~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~---------------~~~~~~~TD~~G~F~i~ 90 (176)
...+.|+|.|.=.+| .||+||.|.|=--+..|.- .......||++|.|.+.
T Consensus 58 G~~i~l~G~V~D~~g-----------~PV~~A~VEIWQada~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~ 123 (220)
T TIGR02422 58 GERIIVHGRVLDEDG-----------RPVPNTLVEVWQANAAGRYRHKNDQYLAPLDPNFGGVGRTLTDSDGYYRFR 123 (220)
T ss_pred CCEEEEEEEEECCCC-----------CCCCCCEEEEEecCCCCcccCccCccccccCCCCCCEEEEEECCCccEEEE
Confidence 356999999994333 7999999999666554311 12456779999999885
No 22
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=80.20 E-value=1.8 Score=31.46 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhh
Q 048602 2 LSMALMLSAAFFMGCTNLAVA 22 (176)
Q Consensus 2 ~~~~~~l~~s~~~~~~~~~~a 22 (176)
++||.+||+++|+++|-.+++
T Consensus 6 ~llL~l~LA~lLlisSevaa~ 26 (95)
T PF07172_consen 6 FLLLGLLLAALLLISSEVAAR 26 (95)
T ss_pred HHHHHHHHHHHHHHHhhhhhH
Confidence 456666667777776654443
No 23
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=79.13 E-value=3.6 Score=36.77 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=33.3
Q ss_pred eEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEccc
Q 048602 32 IHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRI 94 (176)
Q Consensus 32 v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~~ 94 (176)
..|.|.|.=+ ....||+||+|.|+= .+ ...+||.+|.|.+.||.-
T Consensus 297 ~gI~G~V~D~----------~~g~pl~~AtV~V~g--~~------~~~~Td~~G~f~~~l~pG 341 (375)
T cd03863 297 RGVRGFVLDA----------TDGRGILNATISVAD--IN------HPVTTYKDGDYWRLLVPG 341 (375)
T ss_pred CeEEEEEEeC----------CCCCCCCCeEEEEec--Cc------CceEECCCccEEEccCCe
Confidence 4789999742 123799999999962 11 346799999999977664
No 24
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=77.59 E-value=10 Score=32.19 Aligned_cols=50 Identities=12% Similarity=0.189 Sum_probs=36.8
Q ss_pred CceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCc----------eEEEEEeEcCCCceEEEE
Q 048602 30 GVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSR----------AMCYKSDETDEQGQFYMT 90 (176)
Q Consensus 30 ~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~----------~~~~~~~~TD~~G~F~i~ 90 (176)
..+.|+|.|. |. .-.||+||.|.|=--+.+|. .-++....||++|.|.+.
T Consensus 97 ~~l~v~G~V~-D~----------~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~F~ 156 (246)
T TIGR02465 97 KPLLIRGTVR-DL----------SGTPVAGAVIDVWHSTPDGKYSGFHDNIPDDYYRGKLVTAADGSYEVR 156 (246)
T ss_pred cEEEEEEEEE-cC----------CCCCcCCcEEEEECCCCCCCCCCCCCCCCCCCCeEEEEECCCCCEEEE
Confidence 4588999998 42 12799999999977766531 123567889999999885
No 25
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=77.37 E-value=12 Score=30.55 Aligned_cols=51 Identities=24% Similarity=0.359 Sum_probs=36.3
Q ss_pred CCceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCce-------------E--EEEEeEcCCCceEEEE
Q 048602 29 AGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRA-------------M--CYKSDETDEQGQFYMT 90 (176)
Q Consensus 29 ~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~-------------~--~~~~~~TD~~G~F~i~ 90 (176)
...+.|.|.|.=.+ -.||+||.|.|=.-+.+|.- . -+....||++|.|.+.
T Consensus 37 G~~l~l~G~V~D~~-----------g~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~~~f~grGr~~Td~~G~y~f~ 102 (193)
T TIGR02423 37 GERIRLEGRVLDGD-----------GHPVPDALIEIWQADAAGRYNSPADLRAPATDPGFRGWGRTGTDESGEFTFE 102 (193)
T ss_pred CCEEEEEEEEECCC-----------CCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCCeEEEEECCCCCEEEE
Confidence 45699999999322 28999999999766544211 1 1245689999999875
No 26
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=76.73 E-value=11 Score=31.94 Aligned_cols=50 Identities=16% Similarity=0.248 Sum_probs=36.5
Q ss_pred CceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCc----------eEEEEEeEcCCCceEEEE
Q 048602 30 GVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSR----------AMCYKSDETDEQGQFYMT 90 (176)
Q Consensus 30 ~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~----------~~~~~~~~TD~~G~F~i~ 90 (176)
..+.|+|.|. |. .-.||+||.|.|=--+.+|. .-++....||++|.|.+.
T Consensus 98 ~~l~l~G~V~-D~----------~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~RG~~~Td~~G~y~F~ 157 (247)
T cd03462 98 KPLLFRGTVK-DL----------AGAPVAGAVIDVWHSTPDGKYSGFHPNIPEDYYRGKIRTDEDGRYEVR 157 (247)
T ss_pred CEEEEEEEEE-cC----------CCCCcCCcEEEEECCCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEE
Confidence 4589999998 32 12799999999977666531 123457789999999875
No 27
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=76.34 E-value=7.2 Score=29.08 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=29.7
Q ss_pred CCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEc
Q 048602 53 GSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVD 92 (176)
Q Consensus 53 ~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~ 92 (176)
.-.|-.|++|.|...+.++... ..++.||++|...-.++
T Consensus 12 ~G~PAagv~V~L~~~~~~~~~~-i~~~~Tn~DGR~~~~l~ 50 (112)
T TIGR02962 12 SGKPAAGVPVTLYRLDGSGWTP-LAEGVTNADGRCPDLLP 50 (112)
T ss_pred CCccCCCCEEEEEEecCCCeEE-EEEEEECCCCCCcCccc
Confidence 4479999999999877654333 37999999999874444
No 28
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=75.91 E-value=13 Score=31.20 Aligned_cols=50 Identities=28% Similarity=0.329 Sum_probs=37.8
Q ss_pred CceEEEEEEEcccCCCCCccccCCCccCCCCEEEE-EecCCC-------Cce------EEEEEeEcCCCceEEEE
Q 048602 30 GVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSL-TCMDDR-------SRA------MCYKSDETDEQGQFYMT 90 (176)
Q Consensus 30 ~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v-~C~~~~-------~~~------~~~~~~~TD~~G~F~i~ 90 (176)
-.+.|+|+|+=.+| .|++||.|.| +|.... .+. .-.....||++|.|...
T Consensus 71 e~i~l~G~VlD~~G-----------~Pv~~A~VEiWQAda~GrY~~~~d~~~~~~~~f~g~Gr~~Td~~G~y~F~ 134 (226)
T COG3485 71 ERILLEGRVLDGNG-----------RPVPDALVEIWQADADGRYSHPKDSRLAPLPNFNGRGRTITDEDGEYRFR 134 (226)
T ss_pred ceEEEEEEEECCCC-----------CCCCCCEEEEEEcCCCCcccCccccccCcCccccceEEEEeCCCceEEEE
Confidence 57999999997664 7999999999 666432 111 13567789999999985
No 29
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=74.53 E-value=14 Score=31.92 Aligned_cols=51 Identities=20% Similarity=0.328 Sum_probs=37.5
Q ss_pred CCceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCc----------eEEEEEeEcCCCceEEEE
Q 048602 29 AGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSR----------AMCYKSDETDEQGQFYMT 90 (176)
Q Consensus 29 ~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~----------~~~~~~~~TD~~G~F~i~ 90 (176)
...+.|+|.|. |. .-.||+||.|.|=.-+.+|. ...+....||++|.|.+.
T Consensus 126 G~pl~v~G~V~-D~----------~G~PI~gA~VeIWqad~~G~Ys~~~~~~~~~~lRG~~~TD~~G~y~F~ 186 (285)
T TIGR02439 126 GETLFLHGQVT-DA----------DGKPIAGAKVELWHANTKGNYSHFDKSQSEFNLRRTIITDAEGRYRAR 186 (285)
T ss_pred CcEEEEEEEEE-CC----------CCCCcCCcEEEEEccCCCCCcCCCCCCCCCCCceEEEEECCCCCEEEE
Confidence 34589999998 32 12799999999987776532 114567889999998875
No 30
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=74.51 E-value=5.2 Score=36.22 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=31.4
Q ss_pred EEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEccc
Q 048602 33 HVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRI 94 (176)
Q Consensus 33 ~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~~ 94 (176)
.|.|.|.-.+ ..||+||+|.|+ +.+ ....||.+|.|.+.|+..
T Consensus 327 gI~G~V~D~~-----------g~pI~~AtV~V~--g~~------~~~~T~~~G~Y~~~L~pG 369 (402)
T cd03865 327 GVKGFVKDLQ-----------GNPIANATISVE--GID------HDITSAKDGDYWRLLAPG 369 (402)
T ss_pred ceEEEEECCC-----------CCcCCCeEEEEE--cCc------cccEECCCeeEEECCCCE
Confidence 3899997632 279999999998 221 234799999999866543
No 31
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=74.26 E-value=3 Score=29.98 Aligned_cols=41 Identities=22% Similarity=0.274 Sum_probs=22.9
Q ss_pred CccCCCCEEEEEecCCCCceEEE-EEeEcCCCceEEEEEccc
Q 048602 54 SNPLKGVTVSLTCMDDRSRAMCY-KSDETDEQGQFYMTVDRI 94 (176)
Q Consensus 54 s~pi~GA~V~v~C~~~~~~~~~~-~~~~TD~~G~F~i~l~~~ 94 (176)
..||+|..|.+.=....+.+.-. ....||++|.+.+.+...
T Consensus 36 gnpv~g~~V~f~~~~~~~~l~~~~~~~~Td~~G~a~~tltst 77 (100)
T PF02369_consen 36 GNPVPGQPVTFSSSSSGGTLSPTNTSATTDSNGIATVTLTST 77 (100)
T ss_dssp SEB-TS-EEEE--EESSSEES-CEE-EEE-TTSEEEEEEE-S
T ss_pred CCCCCCCEEEEEEcCCCcEEecCccccEECCCEEEEEEEEec
Confidence 48999999999111112222111 158999999999999765
No 32
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=72.85 E-value=16 Score=31.59 Aligned_cols=50 Identities=26% Similarity=0.279 Sum_probs=36.9
Q ss_pred CceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCc----------eEEEEEeEcCCCceEEEE
Q 048602 30 GVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSR----------AMCYKSDETDEQGQFYMT 90 (176)
Q Consensus 30 ~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~----------~~~~~~~~TD~~G~F~i~ 90 (176)
..+.|+|.|.=-+ ..||+||.|.|=--+.+|. ...+....||++|.|.+.
T Consensus 119 ~~l~v~G~V~D~~-----------G~Pv~gA~VeiWqad~~G~Y~~~~~~~~~~~lRGr~~Td~~G~y~F~ 178 (277)
T cd03461 119 EPCFVHGRVTDTD-----------GKPLPGATVDVWQADPNGLYDVQDPDQPEFNLRGKFRTDEDGRYAFR 178 (277)
T ss_pred CEEEEEEEEEcCC-----------CCCcCCcEEEEECcCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEE
Confidence 4589999999322 2799999999977665531 123567789999998874
No 33
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=71.79 E-value=5.9 Score=39.40 Aligned_cols=41 Identities=32% Similarity=0.463 Sum_probs=30.9
Q ss_pred eEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEE
Q 048602 32 IHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTV 91 (176)
Q Consensus 32 v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l 91 (176)
+.|.|+|.=- ...-|++||+|.|.=+ ..++||+.|||+++=
T Consensus 316 fSvtGRVl~g----------~~g~~l~gvvvlvngk---------~~~kTdaqGyykLen 356 (1165)
T KOG1948|consen 316 FSVTGRVLVG----------SKGLPLSGVVVLVNGK---------SGGKTDAQGYYKLEN 356 (1165)
T ss_pred EEeeeeEEeC----------CCCCCccceEEEEcCc---------ccceEcccceEEeee
Confidence 5566777642 4568999999998533 467999999999974
No 34
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=70.14 E-value=19 Score=31.12 Aligned_cols=51 Identities=18% Similarity=0.275 Sum_probs=37.4
Q ss_pred CCceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCce----------EEEEEeEcCCCceEEEE
Q 048602 29 AGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRA----------MCYKSDETDEQGQFYMT 90 (176)
Q Consensus 29 ~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~----------~~~~~~~TD~~G~F~i~ 90 (176)
...+.|+|+|. |. .-.||+||.|.|=.-+.+|.- ..+....||++|.|.+.
T Consensus 122 Gepl~l~G~V~-D~----------~G~PI~~A~VeiWqad~~G~Ys~~~~~~~~f~~RGr~~TD~~G~y~F~ 182 (282)
T cd03460 122 GETLVMHGTVT-DT----------DGKPVPGAKVEVWHANSKGFYSHFDPTQSPFNLRRSIITDADGRYRFR 182 (282)
T ss_pred CCEEEEEEEEE-CC----------CCCCcCCcEEEEECCCCCCCcCCCCCCCCCCCCceEEEeCCCCCEEEE
Confidence 35589999998 32 127999999999877765321 13567789999998874
No 35
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=69.25 E-value=10 Score=34.05 Aligned_cols=42 Identities=24% Similarity=0.397 Sum_probs=31.0
Q ss_pred EEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEcc
Q 048602 33 HVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDR 93 (176)
Q Consensus 33 ~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~ 93 (176)
.|.|.|.=.+ ..||+||.|.|+ +. .....||++|.|...+|.
T Consensus 319 ~i~G~V~D~~-----------g~pi~~A~V~v~--g~------~~~~~Td~~G~y~~~l~~ 360 (395)
T cd03867 319 GIKGFVKDKD-----------GNPIKGARISVR--GI------RHDITTAEDGDYWRLLPP 360 (395)
T ss_pred eeEEEEEcCC-----------CCccCCeEEEEe--cc------ccceEECCCceEEEecCC
Confidence 5899997431 279999999996 21 145789999999865554
No 36
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=68.85 E-value=9.6 Score=33.77 Aligned_cols=42 Identities=21% Similarity=0.325 Sum_probs=30.8
Q ss_pred EEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEcc
Q 048602 33 HVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDR 93 (176)
Q Consensus 33 ~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~ 93 (176)
.|.|+|.=. ...||+||+|.|+-.+ ....||.+|.|...||.
T Consensus 297 ~i~G~V~d~-----------~g~pv~~A~V~v~~~~--------~~~~td~~G~y~~~l~~ 338 (372)
T cd03868 297 GVKGFVRDA-----------SGNPIEDATIMVAGID--------HNVTTAKFGDYWRLLLP 338 (372)
T ss_pred ceEEEEEcC-----------CCCcCCCcEEEEEecc--------cceEeCCCceEEecCCC
Confidence 578888632 2279999999997432 34689999999865554
No 37
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=67.90 E-value=22 Score=30.31 Aligned_cols=51 Identities=25% Similarity=0.293 Sum_probs=37.3
Q ss_pred CCceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCc----------eEEEEEeEcCCCceEEEE
Q 048602 29 AGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSR----------AMCYKSDETDEQGQFYMT 90 (176)
Q Consensus 29 ~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~----------~~~~~~~~TD~~G~F~i~ 90 (176)
...+.|+|.|.=-+ ..||+||.|.|=--+.+|. ...+....||++|.|.+.
T Consensus 102 G~~l~l~G~V~D~~-----------G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~f~ 162 (256)
T cd03458 102 GEPLFVHGTVTDTD-----------GKPLAGATVDVWHADPDGFYSQQDPDQPEFNLRGKFRTDEDGRYRFR 162 (256)
T ss_pred CcEEEEEEEEEcCC-----------CCCCCCcEEEEEccCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEE
Confidence 34589999999322 2799999999977665431 123567789999998874
No 38
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=63.91 E-value=16 Score=32.51 Aligned_cols=43 Identities=26% Similarity=0.258 Sum_probs=32.1
Q ss_pred eEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEccc
Q 048602 32 IHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRI 94 (176)
Q Consensus 32 v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~~ 94 (176)
..|.|+|.= . ...||+||+|.|+= . . ...||++|.|.+.||..
T Consensus 287 ~gI~G~V~d-~----------~g~pi~~A~V~v~g--~------~-~~~T~~~G~y~~~L~pG 329 (363)
T cd06245 287 KGVHGVVTD-K----------AGKPISGATIVLNG--G------H-RVYTKEGGYFHVLLAPG 329 (363)
T ss_pred cEEEEEEEc-C----------CCCCccceEEEEeC--C------C-ceEeCCCcEEEEecCCc
Confidence 578999963 2 12799999999972 1 1 34699999999987654
No 39
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=63.18 E-value=8.2 Score=23.24 Aligned_cols=13 Identities=31% Similarity=1.037 Sum_probs=9.3
Q ss_pred CCceEEEEEEEcccC
Q 048602 29 AGVIHVGGQVLCQNC 43 (176)
Q Consensus 29 ~~~v~V~G~VyCd~C 43 (176)
+..++|.|. |.+|
T Consensus 23 pG~ViING~--C~dC 35 (36)
T PF08194_consen 23 PGNVIINGK--CIDC 35 (36)
T ss_pred CCeEEECce--eeeC
Confidence 457888885 7776
No 40
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=62.73 E-value=6.3 Score=23.37 Aligned_cols=29 Identities=17% Similarity=0.447 Sum_probs=22.9
Q ss_pred EEEcccCCCCCccccCCCccCCCCEEEEEecC
Q 048602 37 QVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMD 68 (176)
Q Consensus 37 ~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~ 68 (176)
.|-|.+|...+. -...-|++..++|+|..
T Consensus 2 ~i~Cp~C~~~y~---i~d~~ip~~g~~v~C~~ 30 (36)
T PF13717_consen 2 IITCPNCQAKYE---IDDEKIPPKGRKVRCSK 30 (36)
T ss_pred EEECCCCCCEEe---CCHHHCCCCCcEEECCC
Confidence 478999998765 44556999999999985
No 41
>PF13115 YtkA: YtkA-like
Probab=60.66 E-value=48 Score=22.44 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=30.3
Q ss_pred CCCccCCCCEEEEEecCCC--C--ceEEEEEeEcCCCceEEEEEccc
Q 048602 52 NGSNPLKGVTVSLTCMDDR--S--RAMCYKSDETDEQGQFYMTVDRI 94 (176)
Q Consensus 52 ~~s~pi~GA~V~v~C~~~~--~--~~~~~~~~~TD~~G~F~i~l~~~ 94 (176)
....|+.||.|.|+-.-.. + .-.........+.|.|.+++...
T Consensus 30 ~~g~pv~~a~V~~~~~m~~~~g~~~~~~~~~~~~~~~G~Y~~~~~f~ 76 (86)
T PF13115_consen 30 QGGKPVTDADVQFEIWMPDMEGMEPMTSKVELEETGPGVYEAEVTFS 76 (86)
T ss_pred CCCCCCCCCEEEEEEEeCCCCCCCCCceeeeeecCCCCeEEEEeecC
Confidence 3458999999999998763 2 11233455557999999986553
No 42
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=59.15 E-value=15 Score=33.04 Aligned_cols=39 Identities=15% Similarity=0.270 Sum_probs=28.8
Q ss_pred eEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEE
Q 048602 32 IHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMT 90 (176)
Q Consensus 32 v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~ 90 (176)
..|.|+|.-.+ ..||+||+|.|+ +.+ ....||++|.| +.
T Consensus 316 ~gI~G~V~D~~-----------g~pi~~A~V~v~--g~~------~~~~T~~~G~y-~r 354 (392)
T cd03864 316 QGIKGMVTDEN-----------NNGIANAVISVS--GIS------HDVTSGTLGDY-FR 354 (392)
T ss_pred CeEEEEEECCC-----------CCccCCeEEEEE--CCc------cceEECCCCcE-Ee
Confidence 37899997632 279999999995 221 34689999999 54
No 43
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=58.56 E-value=17 Score=32.41 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=26.0
Q ss_pred CccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEcc
Q 048602 54 SNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDR 93 (176)
Q Consensus 54 s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~ 93 (176)
+.+++|.+|.++=++.. +..+.||.+|||.|...-
T Consensus 93 s~ev~~vpV~~T~~~~~-----tv~~~Td~~Gyf~i~~~~ 127 (373)
T COG4850 93 SDEVPNVPVYVTLKNGA-----TVNVATDDEGYFIIHAVI 127 (373)
T ss_pred cccCCCceEEEecCCCc-----eEEeEecCCCceEEEEec
Confidence 46788888877766432 468899999999986533
No 44
>TIGR03361 VI_Rhs_Vgr type VI secretion system Vgr family protein. Members of this protein family belong to the Rhs element Vgr protein family (see TIGR01646), but furthermore all are found in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often found far the type VI secretion locus.
Probab=58.30 E-value=27 Score=31.97 Aligned_cols=50 Identities=20% Similarity=0.190 Sum_probs=38.3
Q ss_pred CCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEccccccCCCcccceEEEEccC
Q 048602 57 LKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRIINGKELKAKLCSVRLVSS 112 (176)
Q Consensus 57 i~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~~~~~~~~~~~~C~v~L~sS 112 (176)
|+|...++......+ +..||+.|.++|.++.+..+...+..+|.+++...
T Consensus 358 i~G~q~A~V~g~~~~------~i~~D~~GRvkV~f~wd~~~~~~~~~S~wvRvaqp 407 (513)
T TIGR03361 358 IDGPQTATVVGPAGE------EIYTDEYGRVKVQFHWDRYGKRDEKSSCWVRVAQP 407 (513)
T ss_pred CCCCeEEEEECCCCC------EEeECCCCCEEEEecccCCCCCCCCCceEEEeccc
Confidence 888888888875432 34699999999999987554334678999998764
No 45
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.33 E-value=1e+02 Score=25.68 Aligned_cols=62 Identities=18% Similarity=0.161 Sum_probs=42.3
Q ss_pred CCceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEccccccCCCcccceEEE
Q 048602 29 AGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRIINGKELKAKLCSVR 108 (176)
Q Consensus 29 ~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~~~~~~~~~~~~C~v~ 108 (176)
....+|.|.-.+.+|..+ .+ +-..|+| .+..|......+..| +|.|-.+.+.. ..-..|..-
T Consensus 40 ~~n~lv~g~y~i~~~~~~--------~~-~~~~~~V--ts~~G~~~~~~env~--~gqFaFta~e~-----~~y~~Cf~~ 101 (210)
T KOG1691|consen 40 HENVLVVGDYEIINPNGD--------HS-HKLSVKV--TSPYGNNLHSKENVT--KGQFAFTAEES-----GMYEACFTA 101 (210)
T ss_pred ccCeEEEEEEEEecCCCC--------cc-ceEEEEE--EcCCCceeehhhccc--cceEEEEeccC-----CcEEEEEec
Confidence 467899999999998664 22 3334444 455566666677777 78888777665 456778765
No 46
>PF14054 DUF4249: Domain of unknown function (DUF4249)
Probab=47.43 E-value=85 Score=26.07 Aligned_cols=41 Identities=17% Similarity=0.124 Sum_probs=23.8
Q ss_pred CceEEEEEEEcccC--------CCCCccccCCCccCCCCEEEEEecCCCC
Q 048602 30 GVIHVGGQVLCQNC--------FKSYKEWVNGSNPLKGVTVSLTCMDDRS 71 (176)
Q Consensus 30 ~~v~V~G~VyCd~C--------~~~~~~~~~~s~pi~GA~V~v~C~~~~~ 71 (176)
+.++|+|.+-=+.= ..... ......+++||+|.|...+...
T Consensus 26 ~~lVV~~~i~~~~~~~~V~Ls~s~~~~-~~~~~~~v~~A~V~i~~~~~~~ 74 (298)
T PF14054_consen 26 PKLVVEGYITNPGDPQTVRLSRSVPYF-DNSPPEPVSGATVTIYEDGQGN 74 (298)
T ss_pred CeEEEEEEEecCCCcEEEEEEEeeccc-CCCCCcccCCcEEEEEeCCCcc
Confidence 77999999871110 00000 0111223999999998887653
No 47
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=46.83 E-value=87 Score=25.31 Aligned_cols=52 Identities=19% Similarity=0.226 Sum_probs=36.6
Q ss_pred CCCceEEEEEEEc-ccCCCCCccccCCCccCCCCEEEEEecCCCC-----------------ceEEEEEeEcCCCceEEE
Q 048602 28 SAGVIHVGGQVLC-QNCFKSYKEWVNGSNPLKGVTVSLTCMDDRS-----------------RAMCYKSDETDEQGQFYM 89 (176)
Q Consensus 28 ~~~~v~V~G~VyC-d~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~-----------------~~~~~~~~~TD~~G~F~i 89 (176)
...++.++|.|.= ++| .||+||.|.|=--+..| .-..+....||++|.|.+
T Consensus 23 ~G~pl~l~g~V~D~~~c-----------~Pv~~a~VdiWh~da~G~Ys~~~~~~~~~~~~~~~~flRG~~~TD~~G~~~F 91 (188)
T cd03457 23 PGVPLTLDLQVVDVATC-----------CPPPNAAVDIWHCDATGVYSGYSAGGGGGEDTDDETFLRGVQPTDADGVVTF 91 (188)
T ss_pred CCCEEEEEEEEEeCCCC-----------ccCCCeEEEEecCCCCCCCCCccCCccccccccCCCcCEEEEEECCCccEEE
Confidence 3467899999983 124 79999999995544431 011456788999999887
Q ss_pred E
Q 048602 90 T 90 (176)
Q Consensus 90 ~ 90 (176)
.
T Consensus 92 ~ 92 (188)
T cd03457 92 T 92 (188)
T ss_pred E
Confidence 5
No 48
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=46.35 E-value=99 Score=23.67 Aligned_cols=40 Identities=23% Similarity=0.305 Sum_probs=25.6
Q ss_pred CCCccCCCCEEEEEec-CCC----CceEEEEEeEcCCCceEEEEEc
Q 048602 52 NGSNPLKGVTVSLTCM-DDR----SRAMCYKSDETDEQGQFYMTVD 92 (176)
Q Consensus 52 ~~s~pi~GA~V~v~C~-~~~----~~~~~~~~~~TD~~G~F~i~l~ 92 (176)
....|+.|.+|.|.=. +.+ ..+- -.-|+||++|.+...-+
T Consensus 51 ~e~~pi~~~ev~lmKa~ds~~qPs~eig-~~IGKTD~~Gki~Wk~~ 95 (131)
T PF10794_consen 51 AEGQPIKDFEVTLMKAADSDPQPSKEIG-ISIGKTDEEGKIIWKNG 95 (131)
T ss_pred CCCCcccceEEEEEeccccCCCCchhhc-eeecccCCCCcEEEecC
Confidence 3448999999998752 222 1111 25789999887765533
No 49
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=41.86 E-value=1e+02 Score=21.76 Aligned_cols=53 Identities=19% Similarity=0.225 Sum_probs=35.9
Q ss_pred CCCCCceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceE----EEEEeEcCCCceEEEEEcccc
Q 048602 26 DASAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAM----CYKSDETDEQGQFYMTVDRII 95 (176)
Q Consensus 26 ~~~~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~----~~~~~~TD~~G~F~i~l~~~~ 95 (176)
+.-.+++.|.|+-- .+ -++|.++=+|.+++++ ..+.+-.++.|.|.+.+....
T Consensus 12 ~~V~sp~~V~G~A~------~F-----------Egtv~~rv~D~~g~vl~e~~~~a~~g~~~~g~F~~tv~~~~ 68 (88)
T PF10648_consen 12 DTVSSPVKVSGKAR------VF-----------EGTVNIRVRDGHGEVLAEGFVTATGGAPSWGPFEGTVSFPP 68 (88)
T ss_pred CCcCCCEEEEEEEE------Ee-----------eeEEEEEEEcCCCcEEEEeeEEeccCCCcccceEEEEEeCC
Confidence 34567899999822 22 2577777788887765 233345677899999887653
No 50
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain. However, most of the sequences listed in this family do not bind thyroid hormones. They are actually enzymes of the purine catabolism that catalyse the conversion of 5-hydroxyisourate (HIU) to OHCU [, ]. HIU hydrolysis is the original function of the family and is conserved from bacteria to mammals; transthyretins arose by gene duplications in the vertebrate lineage [, ]. HIUases are distinguished in the alignment from the conserved C-terminal YRGS sequence. Transthyretin (formerly prealbumin) is one of 3 thyroid hormone-binding proteins found in the blood of vertebrates []. It is produced in the liver and circulates in the bloodstream, where it binds retinol and thyroxine (T4) []. It differs from the other 2 hormone-binding proteins (T4-binding globulin and albumin) in 3 distinct ways: (1) the gene is expressed at a high rate in the brain choroid plexus; (2) it is enriched in cerebrospinal fluid; and (3) no genetically caused absence has been observed, suggesting an essential role in brain function, distinct from that played in the bloodstream []. The protein consists of around 130 amino acids, which assemble as a homotetramer that contains an internal channel in which T4 is bound. Within this complex, T4 appears to be transported across the blood-brain barrier, where, in the choroid plexus, the hormone stimulates further synthesis of transthyretin. The protein then diffuses back into the bloodstream, where it binds T4 for transport back to the brain [].; PDB: 1TFP_B 1KGJ_D 1IE4_C 1GKE_C 1KGI_D 2H0J_B 2H0E_B 2H0F_B 1ZD6_A 3DGD_D ....
Probab=41.44 E-value=35 Score=25.34 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=25.1
Q ss_pred CCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEE
Q 048602 53 GSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFY 88 (176)
Q Consensus 53 ~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~ 88 (176)
.-.|-.|..|+|.=.+..+.-....++.||++|...
T Consensus 12 ~G~PA~gv~V~L~~~~~~~~~~~l~~~~Td~DGR~~ 47 (112)
T PF00576_consen 12 TGKPAAGVPVTLYRLDSDGSWTLLAEGVTDADGRIK 47 (112)
T ss_dssp TTEE-TT-EEEEEEEETTSCEEEEEEEEBETTSEES
T ss_pred CCCCccCCEEEEEEecCCCCcEEEEEEEECCCCccc
Confidence 347899999999877644333334799999999874
No 51
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=40.90 E-value=77 Score=21.92 Aligned_cols=71 Identities=17% Similarity=0.128 Sum_probs=46.3
Q ss_pred CCceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEe-EcCCCceEEEEEccccccCCCcccceEE
Q 048602 29 AGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSD-ETDEQGQFYMTVDRIINGKELKAKLCSV 107 (176)
Q Consensus 29 ~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~-~TD~~G~F~i~l~~~~~~~~~~~~~C~v 107 (176)
..+|.+.+.+.=.+ . ...+..+..|.|+=.+.+|..+..... .+|.+|.|..+++-... .......+
T Consensus 14 GetV~~~~~~~~~~-~--------~~~~~~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~---~~~G~y~i 81 (99)
T PF01835_consen 14 GETVHFRAIVRDLD-N--------DFKPPANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDD---APLGTYTI 81 (99)
T ss_dssp TSEEEEEEEEEEEC-T--------TCSCESSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS------EEEEE
T ss_pred CCEEEEEEEEeccc-c--------ccccccCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCC---CCCEeEEE
Confidence 34566666654433 1 136788899999999998888877788 88999999887544311 34566676
Q ss_pred EEcc
Q 048602 108 RLVS 111 (176)
Q Consensus 108 ~L~s 111 (176)
.+..
T Consensus 82 ~~~~ 85 (99)
T PF01835_consen 82 RVKT 85 (99)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6655
No 52
>COG5341 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.37 E-value=25 Score=26.94 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCCCCCceEEEEEEEc
Q 048602 4 MALMLSAAFFMGCTNLAVANYGDASAGVIHVGGQVLC 40 (176)
Q Consensus 4 ~~~~l~~s~~~~~~~~~~a~~~~~~~~~v~V~G~VyC 40 (176)
||++|+...+++.+++.+.- | ..+.+.|.|+++=
T Consensus 18 ~LiI~sf~~i~~f~~a~~~k-G--~~A~i~v~Gk~~r 51 (132)
T COG5341 18 MLIILSFLPILLFSLAKAKK-G--AVAEISVDGKVIR 51 (132)
T ss_pred HHHHHHHHHHHhheeeeccC-C--cEEEEEECCEEEE
Confidence 44444444334443332222 2 4477889998874
No 53
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=39.01 E-value=61 Score=22.47 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=28.0
Q ss_pred CCccCCCCEEEEEecCCCCceE-EEEEeEcCCCceEEEEEccc
Q 048602 53 GSNPLKGVTVSLTCMDDRSRAM-CYKSDETDEQGQFYMTVDRI 94 (176)
Q Consensus 53 ~s~pi~GA~V~v~C~~~~~~~~-~~~~~~TD~~G~F~i~l~~~ 94 (176)
...|++|+.|.++=.... ... -.....||++|...+.+...
T Consensus 30 ~Gnpv~~~~V~f~~~~~~-~~~~~~~~~~Td~~G~a~~~l~~~ 71 (92)
T smart00634 30 NGNPVAGQEVTFTTPSGG-ALTLSKGTATTDANGIATVTLTST 71 (92)
T ss_pred CCCCcCCCEEEEEECCCc-eeeccCCeeeeCCCCEEEEEEECC
Confidence 347999999877755432 111 12456899999999998754
No 54
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU). HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located betw
Probab=37.05 E-value=1e+02 Score=22.85 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=35.7
Q ss_pred CCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEccccccCCCcccceEEEEcc
Q 048602 53 GSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRIINGKELKAKLCSVRLVS 111 (176)
Q Consensus 53 ~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~~~~~~~~~~~~C~v~L~s 111 (176)
.-.|-.|.+|+|.=.+..+... ..++.||++|...-.++... .......++....
T Consensus 12 ~G~PAagv~V~L~~~~~~~~~~-i~~~~Td~DGR~~~~~~~~~---~~~~G~Y~l~F~~ 66 (112)
T cd05822 12 TGKPAAGVAVTLYRLDGNGWTL-LATGVTNADGRCDDLLPPGA---QLAAGTYKLTFDT 66 (112)
T ss_pred CCcccCCCEEEEEEecCCCeEE-EEEEEECCCCCccCcccccc---cCCCeeEEEEEEh
Confidence 3478899999998766554333 37999999999876555321 1334555555544
No 55
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=34.39 E-value=75 Score=32.06 Aligned_cols=57 Identities=16% Similarity=0.307 Sum_probs=40.0
Q ss_pred CCceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEE
Q 048602 29 AGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMT 90 (176)
Q Consensus 29 ~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~ 90 (176)
...++++|+-.=-+|.-.- .++...|..|.-+.-.=.+.+ .+..+++||++|.|+|+
T Consensus 895 ~~~vvl~gkRvAySayGtv--ssLsGdp~~gVaieA~sdn~~---~y~eeattdenG~yRiR 951 (1165)
T KOG1948|consen 895 HENVVLKGKRVAYSAYGTV--SSLSGDPMKGVAIEALSDNCD---LYQEEATTDENGTYRIR 951 (1165)
T ss_pred eEEEEEEEEEEEEEeeeeh--hhccCCcccCeEEEEecCCCC---ccccccccccCCcEEEe
Confidence 4568899998888886532 346678888865544433322 23468999999999996
No 56
>TIGR01646 vgr_GE Rhs element Vgr protein. This model represents the Vgr family of proteins, associated with some classes of Rhs elements. This model does not include a large octapeptide repeat region, VGXXXXXX, found in the Vgr of Rhs classes G and E.
Probab=32.86 E-value=1e+02 Score=27.91 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=26.0
Q ss_pred EeEcCCCceEEEEEccccccCCCcccceEEEEcc
Q 048602 78 SDETDEQGQFYMTVDRIINGKELKAKLCSVRLVS 111 (176)
Q Consensus 78 ~~~TD~~G~F~i~l~~~~~~~~~~~~~C~v~L~s 111 (176)
+..+|+.|.++|.+|.+......+..+|.+++..
T Consensus 362 ~~~~d~~GRvkV~f~wd~~~~~~~~~S~W~Rvaq 395 (483)
T TIGR01646 362 EIHTDKYGRIRVHFHWDRYGQSNDYSSCWIRVAQ 395 (483)
T ss_pred eeccCCCCcEEEEeecCCCCCCCCCCceEEEEec
Confidence 4459999999999998754333456899999765
No 57
>cd05469 Transthyretin_like Transthyretin_like. This domain is present in the transthyretin-like protein (TLP) family which includes transthyretin (TTR) and a transthyretin-related protein called 5-hydroxyisourate hydrolase (HIUase). TTR and HIUase are homotetrameric proteins with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits. TTR transports thyroid hormones and retinol in the blood serum of vertebrates while HIUase catalyzes the second step in a three-step ureide pathway. TTRs are highly conserved and found only in vertebrates while the HIUases are found in a wide range of bacterial, plant, fungal, slime mold and vertebrate organisms.
Probab=31.54 E-value=1e+02 Score=23.00 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=26.9
Q ss_pred CCccCCCCEEEEEecCC-CCceEEEEEeEcCCCceEEEEEc
Q 048602 53 GSNPLKGVTVSLTCMDD-RSRAMCYKSDETDEQGQFYMTVD 92 (176)
Q Consensus 53 ~s~pi~GA~V~v~C~~~-~~~~~~~~~~~TD~~G~F~i~l~ 92 (176)
.-.|-.|.+|+|.=.+. .... ...++.||++|...-.++
T Consensus 12 ~G~PAagv~V~L~~~~~~~~w~-~l~~~~Tn~DGR~~~~l~ 51 (113)
T cd05469 12 RGSPAANVAIKVFRKTADGSWE-IFATGKTNEDGELHGLIT 51 (113)
T ss_pred CCccCCCCEEEEEEecCCCceE-EEEEEEECCCCCccCccc
Confidence 34788999999975543 2222 237999999998864444
No 58
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=31.44 E-value=52 Score=22.15 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=25.2
Q ss_pred EEEcccCCCCCcccc---CCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEccc
Q 048602 37 QVLCQNCFKSYKEWV---NGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRI 94 (176)
Q Consensus 37 ~VyCd~C~~~~~~~~---~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~~ 94 (176)
.+||.+|.....-.. ..-.-+|+..|.+. ......|.|.|.+++.
T Consensus 3 IeyC~~C~y~~Ra~~l~q~L~~~Fp~~~v~~~-------------~~~~~~G~Fev~~~g~ 50 (72)
T TIGR02174 3 IEYCGSCGYKPRAAWLKQELLEEFPDLEIEGE-------------NTPPTTGAFEVTVNGQ 50 (72)
T ss_pred EEECCCCCChHHHHHHHHHHHHHCCCCeeEEe-------------eecCCCcEEEEEECCE
Confidence 479999986432100 00113455544433 3345679999998664
No 59
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=29.85 E-value=35 Score=23.09 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=24.8
Q ss_pred EEEEcccCCCCCcc-----ccCCCccCCC--CEEEEEecCCCCceEEEEEeEcCCCceEEEEEcccc
Q 048602 36 GQVLCQNCFKSYKE-----WVNGSNPLKG--VTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRII 95 (176)
Q Consensus 36 G~VyCd~C~~~~~~-----~~~~s~pi~G--A~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~~~ 95 (176)
-..||..|.....- .+. ..+|+ +.|.+ .....|.|.|.+.+..
T Consensus 4 ~IeYC~~C~~~~~a~~l~~~l~--~~fp~~~~~v~~---------------~~~~~G~FEV~v~g~l 53 (76)
T PF10262_consen 4 TIEYCTSCGYRPRALELAQELL--QTFPDRIAEVEL---------------SPGSTGAFEVTVNGEL 53 (76)
T ss_dssp EEEEETTTTCHHHHHHHHHHHH--HHSTTTCSEEEE---------------EEESTT-EEEEETTEE
T ss_pred EEEECCCCCCHHHHHHHHHHHH--HHCCCcceEEEE---------------EeccCCEEEEEEccEE
Confidence 35799999753211 111 13444 55554 3356899999998753
No 60
>PF07245 Phlebovirus_G2: Phlebovirus glycoprotein G2; InterPro: IPR009878 This domain is found in several Phlebovirus glycoprotein G2 sequences. Members of the Bunyaviridae family acquire an envelope by budding through the lipid bilayer of the Golgi complex. The budding compartment is thought to be determined by the accumulation of the two heterodimeric membrane glycoproteins G1 and G2 in the Golgi [].
Probab=28.44 E-value=1.3e+02 Score=28.28 Aligned_cols=55 Identities=13% Similarity=0.213 Sum_probs=36.4
Q ss_pred CCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEccccccCCCcccceEEEEccCCC--cCCcc
Q 048602 57 LKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRIINGKELKAKLCSVRLVSSTH--ADCSI 119 (176)
Q Consensus 57 i~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~~~~~~~~~~~~C~v~L~sSp~--~~C~~ 119 (176)
..||+|.|+|+..+... ...++..+.+.+-++-. +.....|.....+.|. ..|.+
T Consensus 353 ~~GA~v~I~C~S~~~~~----~~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~V~~~C~~ 409 (507)
T PF07245_consen 353 EEGARVCIKCKSSKNTT----IAAVCCDSSITIAFCCS----PGTHDYCITLHFNSPQVDENCSY 409 (507)
T ss_pred cCCCeEEEEEEeCCCCe----EEEEecCCcEEEEEecC----CCCeeEEEEEEcCCcEEEEEEEE
Confidence 46899999999876543 24577778777766543 2345678776667663 33554
No 61
>PF08261 Carcinustatin: Carcinustatin peptide
Probab=27.82 E-value=20 Score=14.53 Aligned_cols=6 Identities=33% Similarity=1.254 Sum_probs=3.8
Q ss_pred eeceee
Q 048602 148 VGPFYY 153 (176)
Q Consensus 148 vgPf~F 153 (176)
+||++|
T Consensus 1 agpy~f 6 (8)
T PF08261_consen 1 AGPYSF 6 (8)
T ss_pred CCcccc
Confidence 467666
No 62
>cd05821 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates. TTR distributes the two thyroid hormones T3 (3,5,3'-triiodo-L-thyronine) and T4 (Thyroxin, or 3,5,3',5'-tetraiodo-L-thyronine), as well as retinol (vitamin A) through the formation of a macromolecular complex that includes each of these as well as retinol-binding protein. Misfolded forms of TTR are implicated in the amyloid diseases familial amyloidotic polyneuropathy and senile systemic amyloidosis. TTR forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits, which differ in their ligand binding affinity. A negative cooperativity has been observed for the binding of T4 and other TTR ligands. A fraction of plasma TTR is carried in high density lipoproteins by bindi
Probab=26.28 E-value=1.3e+02 Score=22.77 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=24.6
Q ss_pred CCccCCCCEEEEEecC-CCCceEEEEEeEcCCCceEE
Q 048602 53 GSNPLKGVTVSLTCMD-DRSRAMCYKSDETDEQGQFY 88 (176)
Q Consensus 53 ~s~pi~GA~V~v~C~~-~~~~~~~~~~~~TD~~G~F~ 88 (176)
.-.|=.|.+|+|.=.+ ...... ..++.||++|...
T Consensus 18 ~G~PAaGV~V~L~~~~~~~~w~~-l~~~~Tn~DGR~~ 53 (121)
T cd05821 18 RGSPAANVAVKVFKKTADGSWEP-FASGKTTETGEIH 53 (121)
T ss_pred CCccCCCCEEEEEEecCCCceEE-EEEEEECCCCCCC
Confidence 3478899999996443 332222 3799999999875
No 63
>smart00095 TR_THY Transthyretin.
Probab=25.68 E-value=1.4e+02 Score=22.66 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=24.2
Q ss_pred CCccCCCCEEEEEecC-CCCceEEEEEeEcCCCceEE
Q 048602 53 GSNPLKGVTVSLTCMD-DRSRAMCYKSDETDEQGQFY 88 (176)
Q Consensus 53 ~s~pi~GA~V~v~C~~-~~~~~~~~~~~~TD~~G~F~ 88 (176)
.-.|-.|.+|+|.=.+ ..+.. ...++.||.+|...
T Consensus 15 ~G~PAagv~V~L~~~~~~~~w~-~la~~~Tn~DGR~~ 50 (121)
T smart00095 15 RGSPAVNVAVKVFKKTEEGTWE-PFASGKTNESGEIH 50 (121)
T ss_pred CCccCCCCEEEEEEeCCCCceE-EEEEEecCCCcccc
Confidence 3478899999995333 22222 23799999999874
No 64
>PRK09934 fimbrial-like adhesin protein SfmF; Provisional
Probab=23.54 E-value=1.3e+02 Score=23.44 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=23.5
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhccCCCCCCceEEEEEEEcccCCCC
Q 048602 1 MLSMALMLSAAFFMGCTNLAVANYGDASAGVIHVGGQVLCQNCFKS 46 (176)
Q Consensus 1 ~~~~~~~l~~s~~~~~~~~~~a~~~~~~~~~v~V~G~VyCd~C~~~ 46 (176)
|.-++++++..+++.++..+.+. .....|.+.|.|.=.+|.-.
T Consensus 1 m~~~~~~~~~~~~~~~~~~a~~~---~g~v~i~f~G~I~~~tC~i~ 43 (171)
T PRK09934 1 MRRVFFACFCGLLWSPLSWAADP---LGEINIELHGNVVDFTCTVN 43 (171)
T ss_pred ChhHHHHHHHHHhhChhhhhccC---CCeEEEEEEEEEEeCcceEc
Confidence 44455555544434433222222 12234667999999999853
No 65
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=23.36 E-value=48 Score=19.16 Aligned_cols=30 Identities=20% Similarity=0.372 Sum_probs=19.8
Q ss_pred EEcccCCCCCccccCCCccCCCCEEEEEecCCC
Q 048602 38 VLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDR 70 (176)
Q Consensus 38 VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~ 70 (176)
+-|..|...+. -....|+.....|+|..=+
T Consensus 3 ~~CP~C~~~~~---v~~~~~~~~~~~v~C~~C~ 32 (38)
T TIGR02098 3 IQCPNCKTSFR---VVDSQLGANGGKVRCGKCG 32 (38)
T ss_pred EECCCCCCEEE---eCHHHcCCCCCEEECCCCC
Confidence 56888877654 3344566666688887643
No 66
>PRK15263 putative fimbrial protein StaE; Provisional
Probab=22.94 E-value=67 Score=25.94 Aligned_cols=41 Identities=22% Similarity=0.243 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCCCCceEEEEEEEcccCCC
Q 048602 5 ALMLSAAFFMGCTNLAVANYGDASAGVIHVGGQVLCQNCFK 45 (176)
Q Consensus 5 ~~~l~~s~~~~~~~~~~a~~~~~~~~~v~V~G~VyCd~C~~ 45 (176)
+..|.+++++++.+..++-|.......|.+.|.|.=.+|.-
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~FtG~I~~~tC~I 42 (196)
T PRK15263 2 LYGLSASVVLAAGLFSVAAYAGTDSLGLTVNTTVEMGTCTA 42 (196)
T ss_pred eehhhhhhhhhhcccccceeeccCceEEEEEEEEEcCCcee
Confidence 45667777777766554444445678899999999999984
No 67
>PRK10894 lipopolysaccharide transport periplasmic protein LptA; Provisional
Probab=22.92 E-value=1.5e+02 Score=23.31 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHHHhhhhhh
Q 048602 2 LSMALMLSAAFFMGCTNLAVA 22 (176)
Q Consensus 2 ~~~~~~l~~s~~~~~~~~~~a 22 (176)
|||-++|.++|| +.+.++.|
T Consensus 4 ~~~~~~~~~~ll-~~~~~a~A 23 (180)
T PRK10894 4 LSLNLLLASSLL-AASIPAFA 23 (180)
T ss_pred hHHHHHHHHHHH-HHHHHHhh
Confidence 454444444444 43344444
No 68
>PRK15300 fimbrial protein StiA; Provisional
Probab=22.83 E-value=1.3e+02 Score=23.40 Aligned_cols=19 Identities=21% Similarity=0.513 Sum_probs=16.2
Q ss_pred CCCceEEEEEEEcccCCCC
Q 048602 28 SAGVIHVGGQVLCQNCFKS 46 (176)
Q Consensus 28 ~~~~v~V~G~VyCd~C~~~ 46 (176)
....|.+.|.|.=.+|.-.
T Consensus 27 ~~g~i~f~G~I~~~tC~V~ 45 (179)
T PRK15300 27 KDGTVHITGLIKQNACTVK 45 (179)
T ss_pred CCCEEEEEEEEEccccEEe
Confidence 4568999999999999864
No 69
>PRK09125 DNA ligase; Provisional
Probab=22.81 E-value=52 Score=28.14 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHhhhh
Q 048602 2 LSMALMLSAAFFMGCTNLA 20 (176)
Q Consensus 2 ~~~~~~l~~s~~~~~~~~~ 20 (176)
|+++++|+.+++++.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~ 24 (282)
T PRK09125 6 LLLALALLLALLLLASSAN 24 (282)
T ss_pred HHHHHHHHHHHHHhccccc
Confidence 3455566667766665443
No 70
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=21.96 E-value=33 Score=20.35 Aligned_cols=14 Identities=21% Similarity=0.449 Sum_probs=11.4
Q ss_pred eEEEEEEEcccCCC
Q 048602 32 IHVGGQVLCQNCFK 45 (176)
Q Consensus 32 v~V~G~VyCd~C~~ 45 (176)
....|..||+.|-+
T Consensus 20 ~~~dG~~yC~~cG~ 33 (36)
T PF11781_consen 20 YSDDGFYYCDRCGH 33 (36)
T ss_pred EccCCEEEhhhCce
Confidence 45679999999975
No 71
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=21.89 E-value=2.1e+02 Score=20.26 Aligned_cols=41 Identities=17% Similarity=0.245 Sum_probs=23.7
Q ss_pred CccCCCCEEEEEec-CCC-----CceEEEEEeEcCCCceEEEEEcccc
Q 048602 54 SNPLKGVTVSLTCM-DDR-----SRAMCYKSDETDEQGQFYMTVDRII 95 (176)
Q Consensus 54 s~pi~GA~V~v~C~-~~~-----~~~~~~~~~~TD~~G~F~i~l~~~~ 95 (176)
..++.=..+.|+|. ++. ..-..+..+.+| .|.+.|.++..+
T Consensus 11 ~i~~~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~-sG~ati~l~~~i 57 (81)
T PF03785_consen 11 SINLGQTSISVSCDVPGSYVALSQDGDLYGKAIVN-SGNATINLTNPI 57 (81)
T ss_dssp EEETT-SEEEEEESSTT-EEEEEETTEEEEEEE-B-TTEEEEE-SS--
T ss_pred cccccccEEEEEecCCCcEEEEecCCEEEEEEEec-CceEEEECCccc
Confidence 34556667777777 432 011235899999 999999999553
No 72
>PF15284 PAGK: Phage-encoded virulence factor
Probab=21.56 E-value=1.3e+02 Score=20.22 Aligned_cols=17 Identities=6% Similarity=-0.216 Sum_probs=8.3
Q ss_pred HHHHHHHhhhhhhccCC
Q 048602 10 AAFFMGCTNLAVANYGD 26 (176)
Q Consensus 10 ~s~~~~~~~~~~a~~~~ 26 (176)
.+...+++++=+|.-++
T Consensus 15 LsA~~FSasamAa~~~~ 31 (61)
T PF15284_consen 15 LSAAGFSASAMAADSSP 31 (61)
T ss_pred HHHhhhhHHHHHHhhCC
Confidence 44555655544444333
No 73
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=21.43 E-value=57 Score=23.38 Aligned_cols=14 Identities=29% Similarity=0.437 Sum_probs=8.5
Q ss_pred EEeEcCCCceEEEE
Q 048602 77 KSDETDEQGQFYMT 90 (176)
Q Consensus 77 ~~~~TD~~G~F~i~ 90 (176)
-...||++|.|.|+
T Consensus 42 Ywt~td~~G~Fti~ 55 (95)
T PF14686_consen 42 YWTRTDSDGNFTIP 55 (95)
T ss_dssp EEEE--TTSEEE--
T ss_pred EEEEeCCCCcEEeC
Confidence 36789999999997
No 74
>PF15339 Afaf: Acrosome formation-associated factor
Probab=20.96 E-value=74 Score=25.87 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHh
Q 048602 2 LSMALMLSAAFFMGCT 17 (176)
Q Consensus 2 ~~~~~~l~~s~~~~~~ 17 (176)
++|-++||+.||.+|+
T Consensus 137 sLmTl~lfv~Ll~~c~ 152 (200)
T PF15339_consen 137 SLMTLFLFVILLAFCS 152 (200)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4677788888888886
No 75
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=20.15 E-value=86 Score=23.16 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=9.5
Q ss_pred CcccceEEEEccCC
Q 048602 100 LKAKLCSVRLVSST 113 (176)
Q Consensus 100 ~~~~~C~v~L~sSp 113 (176)
.+++.|++.|.-++
T Consensus 90 ~~e~~~YASL~~~~ 103 (107)
T PF15330_consen 90 PEEQMCYASLDLSP 103 (107)
T ss_pred cccceeeeeecccc
Confidence 45778888886544
Done!