Query 048602
Match_columns 176
No_of_seqs 112 out of 343
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 19:21:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048602.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048602hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3irp_X URO-adherence factor A; 93.7 0.23 8E-06 43.8 8.4 58 30-93 304-362 (429)
2 3uaf_A TTR-52; beta barrel/san 92.9 0.081 2.8E-06 38.8 3.5 53 30-94 3-59 (117)
3 3e8v_A Possible transglutamina 92.4 0.23 7.7E-06 34.3 5.0 39 52-91 10-48 (82)
4 3kcp_A Cellulosomal-scaffoldin 87.6 0.75 2.6E-05 39.2 5.3 57 27-95 153-210 (321)
5 4ank_A Transthyretin; hormone 86.8 1.3 4.4E-05 33.6 5.7 37 52-88 40-76 (147)
6 2bum_B Protocatechuate 3,4-dio 80.8 5.2 0.00018 32.5 7.3 52 28-90 75-141 (241)
7 3mn8_A LP15968P; catalytic dom 80.8 1.7 5.7E-05 38.1 4.6 44 33-94 338-381 (435)
8 2boy_A 3-chlorocatechol 1,2-di 80.3 5.4 0.00018 32.7 7.2 50 30-90 101-160 (254)
9 3t63_M 3,4-PCD, protocatechuat 79.9 5.7 0.00019 32.3 7.2 52 28-90 74-140 (238)
10 1uwy_A Carboxypeptidase M; met 78.9 1.2 4.2E-05 38.7 3.2 44 33-93 297-340 (426)
11 1tmx_A Hydroxyquinol 1,2-dioxy 78.5 5.8 0.0002 33.2 7.0 50 30-90 132-190 (293)
12 2xsu_A Catechol 1,2 dioxygenas 75.9 5.6 0.00019 33.6 6.3 49 31-90 136-194 (312)
13 2azq_A Catechol 1,2-dioxygenas 75.0 8.8 0.0003 32.4 7.2 51 29-90 130-190 (311)
14 2bum_A Protocatechuate 3,4-dio 74.4 6.8 0.00023 31.1 6.1 52 28-90 49-116 (209)
15 2nsm_A Carboxypeptidase N cata 72.2 4 0.00014 35.5 4.6 44 32-94 321-364 (439)
16 3n9t_A PNPC; phospholipid bind 71.9 8.4 0.00029 32.2 6.3 50 30-90 128-187 (290)
17 3th1_A Chlorocatechol 1,2-diox 71.7 10 0.00035 31.2 6.7 50 30-90 98-157 (260)
18 1h8l_A Carboxypeptidase GP180 71.6 4.3 0.00015 34.5 4.6 44 32-93 301-344 (380)
19 3t63_A 3,4-PCD, protocatechuat 70.7 11 0.00037 29.7 6.4 52 28-90 45-107 (200)
20 3o5u_A Chlorocatechol 1,2-diox 70.2 10 0.00036 31.1 6.4 50 30-90 102-162 (257)
21 3hhy_A 1,2-CTD, catechol 1,2-d 64.4 13 0.00045 30.9 6.0 50 30-90 130-189 (280)
22 1dmh_A 1,2-CTD, catechol 1,2-d 59.7 22 0.00076 29.9 6.6 49 31-90 133-193 (311)
23 2g2n_A Transthyretin-like prot 46.6 22 0.00077 25.5 4.0 36 53-89 15-50 (114)
24 1f86_A Transthyretin Thr119Met 44.3 30 0.001 24.9 4.3 41 53-93 12-52 (115)
25 1oo2_A Transthyretin; retinol- 43.4 31 0.0011 24.9 4.3 36 53-88 13-48 (119)
26 2pz4_A Protein GBS052; SPAB, G 39.9 41 0.0014 26.5 5.0 41 52-94 27-88 (239)
27 3qva_A Transthyretin-like prot 37.5 37 0.0013 24.5 3.9 31 53-88 21-51 (116)
28 2h4e_A Transthyretin; amyloid, 36.6 45 0.0015 24.4 4.3 37 53-89 21-57 (127)
29 3iwv_A 5-hydroxyisourate hydro 33.1 53 0.0018 24.4 4.3 36 53-88 37-73 (138)
30 3kpt_A Collagen adhesion prote 32.7 36 0.0012 28.6 3.7 38 54-93 263-305 (355)
31 2p9r_A Alpha-2-M, alpha-2-macr 27.1 1.4E+02 0.0047 19.7 5.4 70 28-111 15-84 (102)
32 1cwv_A Invasin; integrin-bindi 24.8 83 0.0029 27.7 4.8 40 53-94 38-77 (492)
33 3kpt_A Collagen adhesion prote 22.9 1.1E+02 0.0037 25.6 5.0 35 55-92 20-55 (355)
34 1ejp_A Syndecan-4; symmetric-p 22.4 27 0.00093 18.9 0.7 7 169-175 4-10 (28)
35 2w9x_A AXE2A, CJCE2B, putative 21.6 58 0.002 26.9 3.0 60 28-95 26-85 (366)
36 2p5z_X Type VI secretion syste 21.1 46 0.0016 28.8 2.3 51 57-111 383-433 (491)
37 1f00_I Intimin; immunoglobulin 20.8 81 0.0028 25.9 3.6 52 29-95 18-69 (282)
38 1nkg_A Rhamnogalacturonase B; 20.8 1.2E+02 0.004 27.2 4.9 41 31-90 257-297 (508)
No 1
>3irp_X URO-adherence factor A; DEV-IGG fold, cell WALL, hemagglutinin, peptidoglycan-anchor secreted, virulence, cell adhesion; 1.50A {Staphylococcus saprophyticus subsp} PDB: 3irz_A 3is0_X 3is1_X
Probab=93.73 E-value=0.23 Score=43.81 Aligned_cols=58 Identities=21% Similarity=0.341 Sum_probs=44.4
Q ss_pred CceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEE-Ecc
Q 048602 30 GVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMT-VDR 93 (176)
Q Consensus 30 ~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~-l~~ 93 (176)
....|.|.||-|.=+.+-.. .+..+|+|++|.|. +..|.++ ...+||++|.|.+. |+.
T Consensus 304 G~~~igg~Vw~D~n~nG~~D--~~e~gl~gv~v~L~--d~~G~~v--~tttTd~~G~Y~F~~L~~ 362 (429)
T 3irp_X 304 GFGGFGGYVWFDKNNDGVQN--DSNAAAAGITVNLL--DPTGIRL--ATTTTDITGHYNFDNLTN 362 (429)
T ss_dssp CEEEEEEEEEECTTSSSSSC--CSSCBCTTCEEEEE--CTTSCEE--EEEECCTTSEEEEEEEES
T ss_pred ceEEEccEEEEeCCCCCCcC--cCCCCcCCeEEEEE--cCCCCEE--EEEEeCCCCeEEeCCCCC
Confidence 34788999999985555444 45579999999997 5556654 68899999999986 444
No 2
>3uaf_A TTR-52; beta barrel/sandwich, cell engulfment, secreted, protein BIN; 2.01A {Caenorhabditis elegans}
Probab=92.94 E-value=0.081 Score=38.81 Aligned_cols=53 Identities=19% Similarity=0.245 Sum_probs=34.7
Q ss_pred CceEEEEEEEcccCCCCCccccCCCcc--CCCCEEEEEecCCCC--ceEEEEEeEcCCCceEEEEEccc
Q 048602 30 GVIHVGGQVLCQNCFKSYKEWVNGSNP--LKGVTVSLTCMDDRS--RAMCYKSDETDEQGQFYMTVDRI 94 (176)
Q Consensus 30 ~~v~V~G~VyCd~C~~~~~~~~~~s~p--i~GA~V~v~C~~~~~--~~~~~~~~~TD~~G~F~i~l~~~ 94 (176)
..|.|.|+..|.. .| ..+++|+|-=.+..+ .-....+..||++|+|.|.=...
T Consensus 3 qsV~V~G~L~C~~------------~Pa~~~~V~V~L~d~~~~~~d~Ddll~~~~Td~~G~F~l~G~~~ 59 (117)
T 3uaf_A 3 SCLMATGVLKCPT------------DPEAVKKVHIDLWDAAAAAAESDDLMGRTWSDRNGNFQVTGCAS 59 (117)
T ss_dssp EEEEEEEEEECTT------------CGGGGSSCEEEEEEHHHHHTTSCCEEEEEECCTTSEEEEEEEEC
T ss_pred EEEEEEEEEEeCC------------ccCCCCCEEEEEEecccccCCchHhheeeEECCCCEEEEEEEee
Confidence 4689999999954 45 456777664211111 11123688999999999975443
No 3
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=92.44 E-value=0.23 Score=34.33 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=31.4
Q ss_pred CCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEE
Q 048602 52 NGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTV 91 (176)
Q Consensus 52 ~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l 91 (176)
..-+|.+||+|.++=-+...- ...+.-.||++|.|.+..
T Consensus 10 ~~GkPV~gA~Vefe~yNyae~-~~~~~~~TD~~G~~s~~~ 48 (82)
T 3e8v_A 10 AEGQPVADATVEFKVYNYAEF-YTVATKHTDRSGHASLTA 48 (82)
T ss_dssp TTSCBCTTCEEEEEEEETTEE-EEEEEEECCTTSEEEEEC
T ss_pred CCCCCCCCCEEEEEEEEchhe-eEEEEEEECCCceEEEEE
Confidence 445899999999998887432 224778999999999987
No 4
>3kcp_A Cellulosomal-scaffolding protein A; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} PDB: 3p0d_C 4fl4_C 2b59_B
Probab=87.64 E-value=0.75 Score=39.19 Aligned_cols=57 Identities=19% Similarity=0.171 Sum_probs=41.5
Q ss_pred CCCCceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEE-EEcccc
Q 048602 27 ASAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYM-TVDRII 95 (176)
Q Consensus 27 ~~~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i-~l~~~~ 95 (176)
.....-.|.|+|.++-=... + ...+.=.|++|+|.=.+ ..++||++|||+| .+|...
T Consensus 153 ~~~~~~~vsGYi~~~~~~~~--~--~~~~~~~G~~V~i~gt~--------~sa~tD~~G~f~I~~vp~~~ 210 (321)
T 3kcp_A 153 PVIEGYKVSGYILPDFSFDA--T--VAPLVKAGFKVEIVGTE--------LYAVTDANGYFEITGVPANA 210 (321)
T ss_dssp CCCSSEEEEEEEEESSCCCT--T--THHHHHSCCEEEETTSS--------CEEECCTTSEEEEEEECCEE
T ss_pred CCCCCceEEEEEcccccccc--c--cchhccCCcEEEEEecc--------ceeEECCCceEEEeccCCCC
Confidence 34556899999999742221 1 34456789999997665 3889999999999 577753
No 5
>4ank_A Transthyretin; hormone binding protein, thyroxine transport protein, hormon amyloidosis inhibition; 1.70A {Homo sapiens}
Probab=86.80 E-value=1.3 Score=33.62 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=28.0
Q ss_pred CCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEE
Q 048602 52 NGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFY 88 (176)
Q Consensus 52 ~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~ 88 (176)
....|-.|.+|+|.=.+.++.-....+++||++|...
T Consensus 40 ~~G~PA~gv~V~L~~~~~~~~~~~l~~~~Td~DGR~~ 76 (147)
T 4ank_A 40 VRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELH 76 (147)
T ss_dssp TTTEECCSCEEEEEEECTTSCEEEEEEEECCTTSEEC
T ss_pred CCCcCCCCCEEEEEEECCCCCeEEEEEEEeCCCCCCC
Confidence 3447899999999877665543334799999999864
No 6
>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B 2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B* 2buv_B* 2buw_B*
Probab=80.83 E-value=5.2 Score=32.54 Aligned_cols=52 Identities=21% Similarity=0.146 Sum_probs=37.2
Q ss_pred CCCceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCc---------------eEEEEEeEcCCCceEEEE
Q 048602 28 SAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSR---------------AMCYKSDETDEQGQFYMT 90 (176)
Q Consensus 28 ~~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~---------------~~~~~~~~TD~~G~F~i~ 90 (176)
....+.|+|.|.=.+| .||+||.|.|==-|..|. ........||++|.|.+.
T Consensus 75 ~G~~i~v~G~V~D~~G-----------~Pv~~A~VeiWqada~G~Y~~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~ 141 (241)
T 2bum_B 75 IGERVIVHGYVRDQFG-----------RPVKNALVEVWQANASGRYRHPNDQYIGAMDPNFGGCGRMLTDDNGYYVFR 141 (241)
T ss_dssp SSCEEEEEEEEEETTS-----------CBCCSCEEEEECCCTTSCCSSTTCCCSSCCCTTCCCEEEEECCTTSEEEEE
T ss_pred CCcEEEEEEEEECCCC-----------CCCCCcEEEEEecCCCceeCCCCCCcccccCCCccceeEEEeCCCceEEEE
Confidence 3457999999996554 799999999943332221 112467789999999986
No 7
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold, C-terminal, A transthyretin-like domain, hydrolase; HET: NAG GEM; 2.70A {Drosophila melanogaster}
Probab=80.78 E-value=1.7 Score=38.08 Aligned_cols=44 Identities=16% Similarity=0.236 Sum_probs=31.0
Q ss_pred EEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEccc
Q 048602 33 HVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRI 94 (176)
Q Consensus 33 ~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~~ 94 (176)
.|.|+|.=. ...||+||+|.|+ +... ...+||++|.|.+.|+..
T Consensus 338 gv~G~V~D~-----------~G~pi~gA~V~v~--g~~~-----~~~~Td~~G~y~~~l~pG 381 (435)
T 3mn8_A 338 GIKGLVTDA-----------SGFPIADANVYVA--GLEE-----KPMRTSKRGEYWRLLTPG 381 (435)
T ss_dssp SEEEEEECS-----------SSCBCTTCEEEET--TCTT-----SCEECCTTCEEEECCCSE
T ss_pred eeEEEEECC-----------CCCccCceEEEEe--cccc-----cceEeCCCCeEEEecCCC
Confidence 588999632 1279999999993 3111 245799999998876543
No 8
>2boy_A 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: BHO LPP; 1.9A {Rhodococcus opacus}
Probab=80.31 E-value=5.4 Score=32.75 Aligned_cols=50 Identities=24% Similarity=0.327 Sum_probs=35.6
Q ss_pred CceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCc----------eEEEEEeEcCCCceEEEE
Q 048602 30 GVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSR----------AMCYKSDETDEQGQFYMT 90 (176)
Q Consensus 30 ~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~----------~~~~~~~~TD~~G~F~i~ 90 (176)
..+.|+|.|.=.+| .||+||.|.|==-+..|. ........||++|.|.+.
T Consensus 101 ~~l~l~G~V~D~~G-----------~Pv~~A~VeiWqada~G~Y~~~~~~~~~~~~rGr~~Td~~G~y~F~ 160 (254)
T 2boy_A 101 DTLIFRGEVVDQEG-----------APLADVLLDMWQADAAGEYSFINPTLPDYLFRGKIRTDENGRFTLR 160 (254)
T ss_dssp CEEEEEEEEECTTS-----------CBCCSCEEEEECCCTTSCCBTTBTTSCTTTTEEEEECCTTSEEEEE
T ss_pred CEEEEEEEEECCCC-----------CCCCCCEEEEEcCCCCCccCCcCCCCCCCCCeeEEEeCCCceEEEE
Confidence 45899999986544 799999999943332221 111356789999999986
No 9
>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M* 3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M* 2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M* 3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ...
Probab=79.94 E-value=5.7 Score=32.33 Aligned_cols=52 Identities=19% Similarity=0.162 Sum_probs=38.1
Q ss_pred CCCceEEEEEEEcccCCCCCccccCCCccCCCCEEEE-EecCCC---C-----------ceEEEEEeEcCCCceEEEE
Q 048602 28 SAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSL-TCMDDR---S-----------RAMCYKSDETDEQGQFYMT 90 (176)
Q Consensus 28 ~~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v-~C~~~~---~-----------~~~~~~~~~TD~~G~F~i~ 90 (176)
+...+.|+|.|.=.+| .||+||.|.| +|.... . .........||++|.|.+.
T Consensus 74 ~G~~i~l~G~V~D~~G-----------~Pv~~A~VEiWqada~G~Y~~~~d~~~~~~~~~f~~rGr~~TD~~G~y~F~ 140 (238)
T 3t63_M 74 IGERIIVAGRVVDQYG-----------KPVPNTLVEMWQANAGGRYRHKNDRYLAPLDPNFGGVGRCLTDSDGYYSFR 140 (238)
T ss_dssp SSCEEEEEEEEEETTS-----------CBCTTCEEEEEECCTTSCCSSTTCCCSSCCCTTCCCEEEEECCTTSEEEEE
T ss_pred CCcEEEEEEEEECCCC-----------CCCCCCEEEEEecCCCCCCCCccccccccCCCCcCceeEEEECCCceEEEE
Confidence 4467999999996554 7999999999 665321 0 0113467789999999986
No 10
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease, zinc, lipoprotein, hydrolase, structural proteomics in europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP: b.3.2.1 c.56.5.1
Probab=78.94 E-value=1.2 Score=38.71 Aligned_cols=44 Identities=30% Similarity=0.399 Sum_probs=31.5
Q ss_pred EEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEcc
Q 048602 33 HVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDR 93 (176)
Q Consensus 33 ~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~ 93 (176)
.|.|+|.=. ...||+||+|.|+=... + ....||.+|.|.+.++.
T Consensus 297 ~I~G~V~D~-----------~g~pi~gA~V~v~g~~~-~-----~~~~Td~~G~y~~~l~~ 340 (426)
T 1uwy_A 297 GVKGQVFDQ-----------NGNPLPNVIVEVQDRKH-I-----CPYRTNKYGEYYLLLLP 340 (426)
T ss_dssp SEEEEEECT-----------TSCBCCSCEEEETTCCC-S-----SCCBCCTTCEEEECCCS
T ss_pred eeEEEEECC-----------CCCccCceEEEEEeccc-c-----ceeEeCCCCEEEeccCC
Confidence 589998531 22799999999964322 1 13589999999987654
No 11
>1tmx_A Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: HGX; 1.75A {Pimelobacter simplex}
Probab=78.55 E-value=5.8 Score=33.23 Aligned_cols=50 Identities=16% Similarity=0.138 Sum_probs=36.8
Q ss_pred CceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCc---------eEEEEEeEcCCCceEEEE
Q 048602 30 GVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSR---------AMCYKSDETDEQGQFYMT 90 (176)
Q Consensus 30 ~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~---------~~~~~~~~TD~~G~F~i~ 90 (176)
..+.|+|.|.=.+| .||+||.|.|==-+..|. ........||++|.|.+.
T Consensus 132 ~~l~v~G~V~D~~G-----------~Pv~~A~VEiWqada~G~Y~~~~~~~~~~~rGr~~TD~~G~y~F~ 190 (293)
T 1tmx_A 132 EPCWVEGTVTDTDG-----------NPVPDARIEVWEADDDGFYDVQYDDDRTAARAHLLSGPDGGYAFW 190 (293)
T ss_dssp CEEEEEEEEEETTS-----------CBCTTCEEEEECCCTTSCCGGGSSSCCCCSEEEEECCTTSEEEEE
T ss_pred CEEEEEEEEECCCC-----------CCCCCceeEEEecCCCCcccCCccCCCCCceeEEEeCCCceEEEE
Confidence 46999999986544 799999999943333321 223567889999999986
No 12
>2xsu_A Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE; 1.60A {Acinetobacter radioresistens} PDB: 2xsr_A* 2xsv_A*
Probab=75.90 E-value=5.6 Score=33.62 Aligned_cols=49 Identities=16% Similarity=0.181 Sum_probs=35.0
Q ss_pred ceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCc----------eEEEEEeEcCCCceEEEE
Q 048602 31 VIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSR----------AMCYKSDETDEQGQFYMT 90 (176)
Q Consensus 31 ~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~----------~~~~~~~~TD~~G~F~i~ 90 (176)
.+.|+|.|.=.+| .||+||.|.|==-+..|. ........||++|.|.+.
T Consensus 136 ~l~v~G~V~D~~G-----------~Pv~gA~VeiWqada~G~Y~~~~~~~~~~~~rGr~~TD~~G~y~F~ 194 (312)
T 2xsu_A 136 TLIIEGTVTDTEG-----------NIIEGAKVEVWHANSLGNYSFFDKSQSDFNLRRTILTDVNGKYVAL 194 (312)
T ss_dssp EEEEEEEEEETTS-----------CBCTTCEEEEECCCTTSCCBTTBTTSCTTTTEEEEECCTTSEEEEE
T ss_pred eEEEEEEEECCCC-----------CCCCCCEEEEEecCCCCcccCCCCCCCCCCCeeEEEeCCCceEEEE
Confidence 6899999986543 799999999953332221 112356789999999975
No 13
>2azq_A Catechol 1,2-dioxygenase; CTD, lipid, isozyme, intradiol, oxido; HET: PCF; 2.65A {Pseudomonas putida}
Probab=75.00 E-value=8.8 Score=32.39 Aligned_cols=51 Identities=27% Similarity=0.341 Sum_probs=36.1
Q ss_pred CCceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCc----------eEEEEEeEcCCCceEEEE
Q 048602 29 AGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSR----------AMCYKSDETDEQGQFYMT 90 (176)
Q Consensus 29 ~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~----------~~~~~~~~TD~~G~F~i~ 90 (176)
...+.|+|.|.=.+| .||+||.|.|==-+..|. ........||++|.|.+.
T Consensus 130 G~~l~v~G~V~D~~G-----------~Pv~gA~VeiWqada~G~Y~~~~~~~~~f~~rGr~~TD~~G~y~F~ 190 (311)
T 2azq_A 130 GVVMFLQGQVFDANG-----------KPLAGATVDLWHANTQGTYSYFDSTQSEFNLRRRIITDAEGRYRAR 190 (311)
T ss_dssp CCEEEEEEEEECSSS-----------CBCTTCEEEEECCCTTSCCBTTBTTSCTTTTEEEEECCTTCEEEEE
T ss_pred CcEEEEEEEEEcCCC-----------CCCCCceeEEEecCCCCccCCCCCCCCCCCCeeEEEeCCCceEEEE
Confidence 356999999985432 899999999953333221 112457789999999986
No 14
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=74.44 E-value=6.8 Score=31.13 Aligned_cols=52 Identities=15% Similarity=0.191 Sum_probs=36.4
Q ss_pred CCCceEEEEEEEcccCCCCCccccCCCccCCCCEEEE-EecCCC-------C-----ceE--EEEEeEc-CCCceEEEE
Q 048602 28 SAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSL-TCMDDR-------S-----RAM--CYKSDET-DEQGQFYMT 90 (176)
Q Consensus 28 ~~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v-~C~~~~-------~-----~~~--~~~~~~T-D~~G~F~i~ 90 (176)
+...+.|+|.|.=.+| .||+||.|.| +|.... . ... ......| |++|.|.+.
T Consensus 49 ~G~~l~v~G~V~D~~G-----------~Pv~~A~VeiWqada~G~Y~~~~~~~~~~~~~~f~~rGr~~T~d~~G~y~F~ 116 (209)
T 2bum_A 49 QGQRIRLEGQVFDGLG-----------LPLRDVLIEIWQADTNGVYPSQADTQGKQVDPNFLGWGRTGADFGTGFWSFN 116 (209)
T ss_dssp CSCEEEEEECEECTTS-----------CBCSSCEEEEECCCTTSCCSSTTCCSCSCCCTTCCCEEEEECCTTTCCEEEE
T ss_pred CCCEEEEEEEEECCCC-----------CCCCCCEEEEEecCCCCcccCccCCcccccCCCccceeEEeeeCCCcEEEEE
Confidence 4456999999986544 7999999999 454321 0 011 2456677 999999986
No 15
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc peptidase, transthyretin-like domain, processing, peptide modification, hydrolase; HET: NAG; 2.10A {Homo sapiens}
Probab=72.17 E-value=4 Score=35.52 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=32.0
Q ss_pred eEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEccc
Q 048602 32 IHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRI 94 (176)
Q Consensus 32 v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~~ 94 (176)
..|.|.|.= . ...||+||+|.|+=. ....+||.+|.|.+.|+..
T Consensus 321 ~~i~G~V~D-~----------~g~pi~gA~V~v~~~--------~~~~~Td~~G~y~~~l~~G 364 (439)
T 2nsm_A 321 QGIKGMVLD-Q----------NYNNLANAVISVSGI--------NHDVTSGDHGDYFRLLLPG 364 (439)
T ss_dssp CSEEEEEEC-T----------TSCBCTTCEEEETTE--------EEEEECCTTSEEEECCCSE
T ss_pred cceEEEEEc-C----------CCCCccceEEEEEcc--------cceeEECCCCeEEEccCCe
Confidence 358899962 1 127999999999621 2467899999998876653
No 16
>3n9t_A PNPC; phospholipid binds, N-terminal helix tunnel, oxidoreductase; HET: HGX FLC; 2.00A {Pseudomonas putida}
Probab=71.92 E-value=8.4 Score=32.22 Aligned_cols=50 Identities=20% Similarity=0.219 Sum_probs=36.2
Q ss_pred CceEEEEEEEcccCCCCCccccCCCccCCCCEEEE-EecCCC---C------ceEEEEEeEcCCCceEEEE
Q 048602 30 GVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSL-TCMDDR---S------RAMCYKSDETDEQGQFYMT 90 (176)
Q Consensus 30 ~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v-~C~~~~---~------~~~~~~~~~TD~~G~F~i~ 90 (176)
..+.|+|.|+=.+| .||+||.|.| +|.... . .........||++|.|.+.
T Consensus 128 ~~l~l~G~V~D~~G-----------~Pv~~A~VeiWqada~G~Y~~~~~~~~~~~lRGr~~TD~~G~y~F~ 187 (290)
T 3n9t_A 128 VPALVYGRVLDVQG-----------RPVVGAVLDVWQTADNGMYSGQDPDQPFGNLRGRYRSDNDGCFAIQ 187 (290)
T ss_dssp CEEEEEEEEEETTS-----------CBCSSCEEEEECCCTTSCCTTTSTTSCTTTTEEEEECCTTSEEEEE
T ss_pred CeEEEEEEEECCCC-----------CCCCCCEEEEEccCCCCCcCCCCCCCCCCCceeEEEeCCCceEEEE
Confidence 36999999997554 7999999999 454321 0 0112467799999999986
No 17
>3th1_A Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxygenase family, oxidoreductase, iron bindin; HET: 3PH GOL; 3.40A {Pseudomonas putida}
Probab=71.70 E-value=10 Score=31.21 Aligned_cols=50 Identities=18% Similarity=0.234 Sum_probs=35.8
Q ss_pred CceEEEEEEEcccCCCCCccccCCCccCCCCEEEE-EecCCC-------C--ceEEEEEeEcCCCceEEEE
Q 048602 30 GVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSL-TCMDDR-------S--RAMCYKSDETDEQGQFYMT 90 (176)
Q Consensus 30 ~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v-~C~~~~-------~--~~~~~~~~~TD~~G~F~i~ 90 (176)
..+.|.|+|.=.+| .||+||.|.| +|.... + .........||++|.|.+.
T Consensus 98 ~pl~v~G~V~D~~G-----------~Pv~gA~VeiWqad~~G~Y~~~~~~~~~~~~RG~~~TD~~G~y~F~ 157 (260)
T 3th1_A 98 KPLIIRGTVRSDTG-----------ELLAGAVIDVWHSTPDGLYSGIHDNIPVDYYRGKLVTDSQGNYRVR 157 (260)
T ss_dssp CEEEEEEEEEETTS-----------CBCSSCEEEEEECCTTSCCTTTSTTCCTTBTEEEEECCTTSEEEEE
T ss_pred CEEEEEEEEECCCC-----------CCcCCcEEEEEecCCCCcccCcCCCCCCCCCceEEEeCCCCEEEEE
Confidence 45899999985433 7999999999 455321 0 1113477889999999875
No 18
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*
Probab=71.58 E-value=4.3 Score=34.49 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=31.6
Q ss_pred eEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEcc
Q 048602 32 IHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDR 93 (176)
Q Consensus 32 v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~ 93 (176)
..|.|+|.=. ....||+||+|.|+=. ....+||.+|.|.+.|+.
T Consensus 301 ~~i~G~V~D~----------~~g~pi~~A~V~v~~~--------~~~~~Td~~G~y~~~l~~ 344 (380)
T 1h8l_A 301 RGIWGFVLDA----------TDGRGILNATISVADI--------NHPVTTYKDGDYWRLLVQ 344 (380)
T ss_dssp CEEEEEEEET----------TTCSBCTTCEEEETTE--------EEEEECCTTSEEEECCCS
T ss_pred ccceEEEEeC----------CCCCccCceEEEEecC--------cceeEECCCEEEEEecCC
Confidence 4688988632 1238999999999621 135789999999886554
No 19
>3t63_A 3,4-PCD, protocatechuate 3,4-dioxygenase alpha chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 1ykl_A* 1ykm_A* 1ykn_A* 1yko_A* 1ykp_A* 2pcd_A 1ykk_A* 3lmx_A* 3lxv_A* 3mfl_A* 3mi1_A* 3mi5_A* 3lkt_A* 3mv6_A* 3pca_A* 3pcb_A* 3pcc_A* 3pcd_A 3pce_A* 3pcf_A* ...
Probab=70.65 E-value=11 Score=29.74 Aligned_cols=52 Identities=15% Similarity=0.145 Sum_probs=37.3
Q ss_pred CCCceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCc----------eEEEEEeEcCCC-ceEEEE
Q 048602 28 SAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSR----------AMCYKSDETDEQ-GQFYMT 90 (176)
Q Consensus 28 ~~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~----------~~~~~~~~TD~~-G~F~i~ 90 (176)
+...+.|+|.|.=.+| .||+||.|.|==-+.+|. ........||++ |.|.+.
T Consensus 45 ~G~~l~v~G~V~D~~G-----------~Pv~~A~VeiWqada~G~Y~~~~~~~~~f~~rGr~~TD~~~G~~~F~ 107 (200)
T 3t63_A 45 PGEHILLLGQVYDGNG-----------HLVRDSFLEVWQADANGEYQDAYNLENAFNSFGRTATTFDAGEWTLH 107 (200)
T ss_dssp SSCEEEEEECEECTTS-----------CBCSSCEEEEEECCTTSCCCCBCCTTSSBCSEEEEECCSSCCSEEEE
T ss_pred CCCEEEEEEEEECCCC-----------CCCCCCEEEEEccCCCCCcCCCCCCCCCccccceEecCCCCCEEEEE
Confidence 3457999999996544 799999999943333221 123467789998 999986
No 20
>3o5u_A Chlorocatechol 1,2-dioxygenase; beta barrel,oxidoreductase, oxidoreductase; HET: MYY DHB; 2.35A {Rhodococcus opacus} PDB: 3o32_A* 1s9a_A* 3o6j_A* 3o6r_A*
Probab=70.24 E-value=10 Score=31.10 Aligned_cols=50 Identities=14% Similarity=0.221 Sum_probs=36.0
Q ss_pred CceEEEEEEEcccCCCCCccccCCCccCCCCEEEE-EecCCC-------Cc---eEEEEEeEcCCCceEEEE
Q 048602 30 GVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSL-TCMDDR-------SR---AMCYKSDETDEQGQFYMT 90 (176)
Q Consensus 30 ~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v-~C~~~~-------~~---~~~~~~~~TD~~G~F~i~ 90 (176)
..+.|+|.|+=.+| .||+||.|.| +|.... +. ........||++|.|.+.
T Consensus 102 ~~l~l~G~V~D~~G-----------~Pv~~A~VeiWqada~G~Ys~~~~~~~~~~~~RGr~~TD~~G~y~F~ 162 (257)
T 3o5u_A 102 DRMRFTGSVRDTSG-----------TPITGAVIDVWHSTNDGNYSFFSPALPDQYLLRGRVVPAEDGSIEFH 162 (257)
T ss_dssp CEEEEEEEEECTTC-----------CBCTTCEEEEECCCTTSCCTTSCTTSCSSCTTEEEECCCTTSEEEEE
T ss_pred CEEEEEEEEECCCC-----------CCCCCcEEEEEecCCCCCCCCcCCCCCcccCceeEEEeCCCceEEEE
Confidence 46999999996544 7999999999 454321 00 113467789999999986
No 21
>3hhy_A 1,2-CTD, catechol 1,2-dioxygenase; beta-sandwich, aromatic hydrocarbons catabolism, dioxygenase metal-binding, oxidoreductase; HET: 6PL; 1.55A {Rhodococcus opacus} PDB: 3hhx_A* 3hgi_A* 3hj8_A* 3hjq_A* 3hjs_A* 3i4v_A* 3hkp_A* 3i51_A* 3i4y_A*
Probab=64.43 E-value=13 Score=30.86 Aligned_cols=50 Identities=26% Similarity=0.268 Sum_probs=35.7
Q ss_pred CceEEEEEEEcccCCCCCccccCCCccCCCCEEEE-EecCCC---C------ceEEEEEeEcCCCceEEEE
Q 048602 30 GVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSL-TCMDDR---S------RAMCYKSDETDEQGQFYMT 90 (176)
Q Consensus 30 ~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v-~C~~~~---~------~~~~~~~~~TD~~G~F~i~ 90 (176)
..+.|+|.|+=.+| .||+||.|.| +|.... . ....+....||++|.|.+.
T Consensus 130 ~pl~l~G~V~D~~G-----------~Pv~~A~VeiWqada~G~Ys~~~~~~~~~~lRGr~~TD~dG~y~F~ 189 (280)
T 3hhy_A 130 TPLVFSGQVTDLDG-----------NGLAGAKVELWHADNDGYYSQFAPHLPEWNLRGTIIADEEGRYEIT 189 (280)
T ss_dssp CEEEEEEEEECTTS-----------CBCSSCEEEEECCCTTSCCTTSSTTSCTTTTEEEEECCTTSEEEEE
T ss_pred eEEEEEEEEECCCC-----------CCCCCcEEEEEecCCCCCCCCCCCCCCCCcceEEEEeCCCceEEEE
Confidence 46899999996554 7999999999 454321 0 0012467799999999986
No 22
>1dmh_A 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydrocarbon degradation, alpha/beta FO metalloenzyme, substrate, oxidoreductase; HET: LIO; 1.70A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1dlq_A* 1dlm_A* 1dlt_A*
Probab=59.72 E-value=22 Score=29.91 Aligned_cols=49 Identities=20% Similarity=0.246 Sum_probs=34.1
Q ss_pred ceEEEEEEEcccCCCCCccccCCCccCCCCEEEEE-ecCCCC-----------ceEEEEEeEcCCCceEEEE
Q 048602 31 VIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLT-CMDDRS-----------RAMCYKSDETDEQGQFYMT 90 (176)
Q Consensus 31 ~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~-C~~~~~-----------~~~~~~~~~TD~~G~F~i~ 90 (176)
.+.|+|.|.=.+| .||+||.|.|= |..... .........||++|.|.+.
T Consensus 133 ~l~l~G~V~D~~G-----------~Pv~~A~VeiWqada~G~Ys~~~~~~~~~~~~~RGr~~TD~~G~y~F~ 193 (311)
T 1dmh_A 133 TLILHGTIFDADG-----------KPLPNAKVEIWHANTKGFYSHFDPTGEQQAFNMRRSIITDENGQYRVR 193 (311)
T ss_dssp EEEEEEEEECTTS-----------CBCTTCEEEEEECCTTSCCTTSCTTSCCSTTTTEEEEECCTTSEEEEE
T ss_pred eEEEEEEEEcCCC-----------CCCCCcEEEEEccCCCcccCCcCCcccCCCCCCeeEEEeCCCceEEEE
Confidence 6888999985433 89999999994 443210 0112456789999999986
No 23
>2g2n_A Transthyretin-like protein; transthyretin-related protein, unknown functi; 1.65A {Escherichia coli} PDB: 2g2p_A 2igl_A 2gpz_A
Probab=46.62 E-value=22 Score=25.54 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=26.7
Q ss_pred CCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEE
Q 048602 53 GSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYM 89 (176)
Q Consensus 53 ~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i 89 (176)
.-.|-.|.+|+|.=.+..+... ..++.||++|...-
T Consensus 15 ~G~PAagv~V~L~~~~~~~~~~-l~~~~Tn~DGR~~~ 50 (114)
T 2g2n_A 15 TGKPAADVTVTLEKKADNGWLQ-LNTAKTDKDGRIKA 50 (114)
T ss_dssp TTEECCSCEEEEEEECSSSEEE-EEEEECCTTSEESC
T ss_pred CcCCCCCCEEEEEEeCCCCcEE-EEEEecCCCCcccc
Confidence 3478999999998665544333 37999999998643
No 24
>1f86_A Transthyretin Thr119Met variant; protein stability, X-RAY amyloidogenesis, transport protein; HET: T44; 1.10A {Homo sapiens} SCOP: b.3.4.1 PDB: 1fhn_A 1bze_A 1fh2_A 1bzd_A 3fcb_A* 3fc8_A* 3cfm_A 3cfn_A* 3cfq_A* 3cft_A* 3m1o_A* 1bmz_A 1bm7_A 1e3f_A* 1e5a_A* 1e4h_A 1ict_A* 1tt6_A* 1tta_A 1tyr_A* ...
Probab=44.33 E-value=30 Score=24.87 Aligned_cols=41 Identities=17% Similarity=0.145 Sum_probs=27.8
Q ss_pred CCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEcc
Q 048602 53 GSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDR 93 (176)
Q Consensus 53 ~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~ 93 (176)
.-.|-.|.+|+|.=.+.++.-....++.||++|...-.++.
T Consensus 12 ~G~PAagv~V~L~~~~~~~~~~~l~~~~Tn~DGR~~~l~~~ 52 (115)
T 1f86_A 12 RGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTE 52 (115)
T ss_dssp TTEECTTCEEEEEEECTTSCEEEEEEEECCTTSEECCSCCT
T ss_pred CCCcCCCCEEEEEEcCCCCCcEEEEEeecCCCccccCcCCC
Confidence 34789999999986544232223479999999987533333
No 25
>1oo2_A Transthyretin; retinol-binding protein, tetramer, transport protein; 1.56A {Sparus aurata} SCOP: b.3.4.1 PDB: 1sn2_A 1sn0_A 1sn5_A*
Probab=43.45 E-value=31 Score=24.94 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=25.6
Q ss_pred CCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEE
Q 048602 53 GSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFY 88 (176)
Q Consensus 53 ~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~ 88 (176)
.-.|-.|.+|+|.=.+.++.-....++.||++|...
T Consensus 13 ~G~PAagv~V~L~~~~~~~~~~~l~~~~Tn~DGR~~ 48 (119)
T 1oo2_A 13 KGTPAGSVALKVSQKTADGGWTQIATGVTDATGEIH 48 (119)
T ss_dssp TTEECTTCEEEEEEECTTSCEEEEEEEECCTTSCCT
T ss_pred CcCCCCCCEEEEEEeCCCCCcEEEEEEecCCCCccc
Confidence 347899999999865442322234799999999764
No 26
>2pz4_A Protein GBS052; SPAB, GRAM-positive pilins, adhesions, IGG-like domain, cell adhesion; 1.80A {Streptococcus agalactiae} PDB: 3phs_A
Probab=39.87 E-value=41 Score=26.48 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=28.9
Q ss_pred CCCccCCCCEEEEEecCCC--------------------CceEEEEEeEcCCCceEEEE-Eccc
Q 048602 52 NGSNPLKGVTVSLTCMDDR--------------------SRAMCYKSDETDEQGQFYMT-VDRI 94 (176)
Q Consensus 52 ~~s~pi~GA~V~v~C~~~~--------------------~~~~~~~~~~TD~~G~F~i~-l~~~ 94 (176)
....||+||+..|.-.... +.. ....+||++|.+.+. ||..
T Consensus 27 ~~g~~L~Ga~F~l~~~~~~~~~~~~~~w~~~~~~~l~~~~~~--~~~~tTd~~G~~~~~~L~~G 88 (239)
T 2pz4_A 27 KEGTPIEGVLYQLYQLKSTEDGDLLAHWNSLTITELKKQAQQ--VFEATTNQQGKATFNQLPDG 88 (239)
T ss_dssp SSCEECSSCEEEEEEESCCCCTTHHHHHHTSCHHHHHHHEEE--EEEEECCTTSEEEEEEEESE
T ss_pred CCCCCcCCcEEEEEEecCcccccccchhhhhchhhhhccCCc--eeEEEECCCCeEEECCCCCe
Confidence 3457999999999876432 112 356799999999875 5543
No 27
>3qva_A Transthyretin-like protein; transthyretin-related protein, 5-hydroxyisourate hydrolase,; HET: PO4; 1.75A {Klebsiella pneumoniae subsp}
Probab=37.46 E-value=37 Score=24.50 Aligned_cols=31 Identities=32% Similarity=0.385 Sum_probs=24.4
Q ss_pred CCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEE
Q 048602 53 GSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFY 88 (176)
Q Consensus 53 ~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~ 88 (176)
.-.|-+|.+|+|.-.+ . ...++.||++|...
T Consensus 21 ~G~PAagv~V~L~~~~---~--~l~~~~Tn~DGR~~ 51 (116)
T 3qva_A 21 TGTPAEGVTVSLSREG---E--TLANLVTNAQGRIA 51 (116)
T ss_dssp TTEECTTCEEEEEETT---E--EEEEEECCTTSEEC
T ss_pred CCcCCCCCEEEEEEcc---E--eEEEeccCCCCCcc
Confidence 3468999999998765 2 24799999999873
No 28
>2h4e_A Transthyretin; amyloid, sulfite, familial amyloidotic polyne transport protein; HET: CSU; 1.45A {Homo sapiens} SCOP: b.3.4.1 PDB: 2wqa_A* 1zcr_A 1zd6_A 2trh_A 1bz8_A 2qpf_A 1tfp_A
Probab=36.64 E-value=45 Score=24.35 Aligned_cols=37 Identities=19% Similarity=0.169 Sum_probs=26.2
Q ss_pred CCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEE
Q 048602 53 GSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYM 89 (176)
Q Consensus 53 ~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i 89 (176)
.-.|-.|.+|+|.=...++.-....++.||++|...-
T Consensus 21 ~G~PAagv~V~L~~~~~~~~w~~l~~~~Tn~DGR~~~ 57 (127)
T 2h4e_A 21 RGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHG 57 (127)
T ss_dssp TTEECTTCEEEEEEECTTSCEEEEEEEECCTTSEECC
T ss_pred CcCCCCCCEEEEEEeCCCCCeEEEEEeecCCCccccC
Confidence 3478999999998654232222247999999998753
No 29
>3iwv_A 5-hydroxyisourate hydrolase; transthyretin, molecular evolution, URIC acid degradation, T hormones, peroxisome, purine metabolism; 1.68A {Danio rerio} PDB: 3iwu_A 3q1e_A 2h6u_A 2h1x_A
Probab=33.11 E-value=53 Score=24.38 Aligned_cols=36 Identities=19% Similarity=0.179 Sum_probs=26.0
Q ss_pred CCccCCCCEEEEEecCCC-CceEEEEEeEcCCCceEE
Q 048602 53 GSNPLKGVTVSLTCMDDR-SRAMCYKSDETDEQGQFY 88 (176)
Q Consensus 53 ~s~pi~GA~V~v~C~~~~-~~~~~~~~~~TD~~G~F~ 88 (176)
.-.|-.|.+|+|.=.+.. +.-....++.||++|.-.
T Consensus 37 ~G~PAagv~V~L~~~~~~~~~w~~l~~~~Tn~DGR~~ 73 (138)
T 3iwv_A 37 QGVPGANMTIVLHRLDPVSSAWNILTTGITNDDGRCP 73 (138)
T ss_dssp TTEECTTCEEEEEEECSSSCCEEEEEEEECCTTSCCT
T ss_pred CccCCCCCEEEEEEECCCCCCcEEEEEEecCCCCCcC
Confidence 346999999999977642 222334799999999763
No 30
>3kpt_A Collagen adhesion protein; intramolecular amide bond, pilin subunit, beta sheet; 2.10A {Bacillus cereus atcc 14579} PDB: 3rkp_A
Probab=32.71 E-value=36 Score=28.63 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=27.0
Q ss_pred CccCCCCEEEEEecCCCCceEE----EEEeEcCCCceEEEE-Ecc
Q 048602 54 SNPLKGVTVSLTCMDDRSRAMC----YKSDETDEQGQFYMT-VDR 93 (176)
Q Consensus 54 s~pi~GA~V~v~C~~~~~~~~~----~~~~~TD~~G~F~i~-l~~ 93 (176)
..+|+||+-.|...+++ .+. ..+.+||++|.|.+. |+.
T Consensus 263 ~~~L~GA~F~l~~~~g~--~~~~~~~~~~~~td~~G~~~~~~L~~ 305 (355)
T 3kpt_A 263 KNKMKGAEFVLKDNNGK--IVVVAGKEVTGVSDENGVIKWSNIPY 305 (355)
T ss_dssp CCBCSCCEEEEEETTSC--BCBSSSSBCEEECCTTSEEEEEEEES
T ss_pred CcccCCCEEEEEeCCCC--EEEeccceEEEEECCCCeEEECcCCC
Confidence 35999999999976543 210 015789999999985 443
No 31
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=27.11 E-value=1.4e+02 Score=19.74 Aligned_cols=70 Identities=9% Similarity=-0.027 Sum_probs=43.5
Q ss_pred CCCceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEccccccCCCcccceEE
Q 048602 28 SAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRIINGKELKAKLCSV 107 (176)
Q Consensus 28 ~~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~~~~~~~~~~~~C~v 107 (176)
+..+|.+.+.+.=. ...|+.+..|.|+=.+.+|..+......++++|.|..+++-... ......++
T Consensus 15 PGetV~~~~~~~~~-----------~~~p~~~~~~~v~l~dp~g~~v~~~~~~~~~~G~~~~~f~Lp~~---~~~G~y~i 80 (102)
T 2p9r_A 15 PGQTVKFRVVSMDE-----------NFHPLNELIPLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSE---PFQGSYKV 80 (102)
T ss_dssp TTCEEEEEEEEECG-----------GGCBCCCEEEEEEEECTTSCEEEEEEEEECBTTEEEEEEECCSS---CCCEEEEE
T ss_pred CCCEEEEEEEEECC-----------CCcCCCCCceEEEEECCCCCEEEEEEeecCCCCEEEEEEECCCC---CCCeeEEE
Confidence 44567777777611 12466665566666687777766667788999998765433211 34566777
Q ss_pred EEcc
Q 048602 108 RLVS 111 (176)
Q Consensus 108 ~L~s 111 (176)
++..
T Consensus 81 ~~~~ 84 (102)
T 2p9r_A 81 VVQK 84 (102)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 7654
No 32
>1cwv_A Invasin; integrin-binding protein, INV gene, structural protein; HET: CIT; 2.30A {Yersinia pseudotuberculosis} SCOP: b.1.14.1 b.1.14.1 b.1.14.1 b.1.14.1 d.169.1.3
Probab=24.79 E-value=83 Score=27.67 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=29.7
Q ss_pred CCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEccc
Q 048602 53 GSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRI 94 (176)
Q Consensus 53 ~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~~ 94 (176)
...|++|.+|.+.-.++. ........||++|.+.+.|...
T Consensus 38 ~Gnpv~g~~Vtf~~~~g~--~~~~~t~~Td~~G~a~~tltst 77 (492)
T 1cwv_A 38 EGKPLAGQEVVITTNNGA--LPNKITEKTDANGVARIALTNT 77 (492)
T ss_dssp TSCBCCSCEEEEECCTTC--BSCEEEEECCTTSEEEEEEBCS
T ss_pred CCCCCCCCEEEEEECCCc--cccccceeeCCCceEEEEEEcC
Confidence 347999999999865432 2212567999999999998654
No 33
>3kpt_A Collagen adhesion protein; intramolecular amide bond, pilin subunit, beta sheet; 2.10A {Bacillus cereus atcc 14579} PDB: 3rkp_A
Probab=22.86 E-value=1.1e+02 Score=25.59 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=25.6
Q ss_pred ccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEE-EEc
Q 048602 55 NPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYM-TVD 92 (176)
Q Consensus 55 ~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i-~l~ 92 (176)
.+|+||+-.|.=.++. .+ ....+||++|.+.+ .|+
T Consensus 20 ~~L~GA~F~l~~~~g~--~~-~~~~tTd~~G~~~~~~L~ 55 (355)
T 3kpt_A 20 KAMAGAVFSLFKKDGT--EV-KKELATDANGHIRVQGLE 55 (355)
T ss_dssp CBCCSCEEEEEETTSC--EE-EEEEECCTTSEEEEEEEE
T ss_pred CCcCCcEEEEEECCCC--EE-EEEEEECCCCeEEECCcC
Confidence 7999999999854432 22 24678999999987 354
No 34
>1ejp_A Syndecan-4; symmetric-parallel-interwinded dimer, signaling protein; NMR {Synthetic} SCOP: j.80.1.1 PDB: 1ejq_A
Probab=22.41 E-value=27 Score=18.95 Aligned_cols=7 Identities=57% Similarity=1.175 Sum_probs=5.3
Q ss_pred CccCCCC
Q 048602 169 DEDQGSY 175 (176)
Q Consensus 169 ~~~~~~~ 175 (176)
-+|||||
T Consensus 4 KKDEGSY 10 (28)
T 1ejp_A 4 KKDEGSY 10 (28)
T ss_dssp CCCCCCC
T ss_pred ccccccc
Confidence 3678887
No 35
>2w9x_A AXE2A, CJCE2B, putative acetyl xylan esterase; carbohydrate esterase family 2, hydrolase; 2.00A {Cellvibrio japonicus}
Probab=21.56 E-value=58 Score=26.93 Aligned_cols=60 Identities=20% Similarity=0.234 Sum_probs=31.9
Q ss_pred CCCceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEcccc
Q 048602 28 SAGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRII 95 (176)
Q Consensus 28 ~~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~~~ 95 (176)
....+...|++.=+. .+.. -..-...-+|+.++..+++..=.+.. . |...+|.|.+++..
T Consensus 26 ~~~~~~~~GR~~~~~--~~~~-~~~~~~~~~G~~~~~~f~gt~~~~~~--~---~~~~~~~v~vDg~~ 85 (366)
T 2w9x_A 26 KPLPLHIGGRVLVES--PANQ-PVSYTYSWPAVYFETAFKGQSLTLKF--D---DDQNIFRLIVDDKA 85 (366)
T ss_dssp -CCCCEEESCCEEEC--C--C-CCEEEECSTTCEEEECC-CCCCCEEE--E---ESSCEEEEEC--CC
T ss_pred CCCceEEeeeecccC--CCcc-cceeEEecCCEEEEEEEEeCEEEEEE--e---CCCcEEEEEECCeE
Confidence 456788899884211 1100 00112568899999998887423321 1 35678888877663
No 36
>2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1
Probab=21.12 E-value=46 Score=28.84 Aligned_cols=51 Identities=12% Similarity=0.061 Sum_probs=30.7
Q ss_pred CCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEccccccCCCcccceEEEEcc
Q 048602 57 LKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRIINGKELKAKLCSVRLVS 111 (176)
Q Consensus 57 i~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~~~~~~~~~~~~C~v~L~s 111 (176)
++|...++.-...+.. +..-||+.|..+|.++.+..+...+..+|.|++..
T Consensus 383 ~~G~q~A~V~g~~~ee----i~~~~D~~GRvkV~f~wdr~~~~~~~~S~WvRva~ 433 (491)
T 2p5z_X 383 MAGTLPARVTSTVKND----IYAHIDKDGRYRVNLDFDRDTWKPGYESLWVRQSR 433 (491)
T ss_dssp CCSCEEEEECC----C----CSCCBCTTCCEEEECCC-CCCBCTTCCEEEEC---
T ss_pred cCCcEEEEEcCCCCcc----cceeeCCCCCEEEEECCccCCCCCCCcchhhhhhh
Confidence 6676666665543211 01358999999999998755433457899999765
No 37
>1f00_I Intimin; immunoglobulin-like fold, C-type lectin-like fold, cell adhesion; 1.90A {Escherichia coli} SCOP: b.1.14.1 b.1.14.1 d.169.1.3 PDB: 1f02_I 1e5u_I
Probab=20.84 E-value=81 Score=25.95 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=38.4
Q ss_pred CCceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEEEcccc
Q 048602 29 AGVIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMTVDRII 95 (176)
Q Consensus 29 ~~~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~l~~~~ 95 (176)
...+.|+-.|. | .+ .||+|.+|...=.++ .+ .....+||++|...|.|....
T Consensus 18 ~d~~t~tatV~-D---~g--------npv~g~~V~fs~~~G--~l-~~~~~~Td~~G~atvtltst~ 69 (282)
T 1f00_I 18 QDAITYTVKVM-K---GD--------KPVSNQEVTFTTTLG--KL-SNSTEKTDTNGYAKVTLTSTT 69 (282)
T ss_dssp CCCEEEEEEEE-E---TT--------EECTTCEEEEEESSS--EE-SCSEEECCTTSEEEEEEECSS
T ss_pred cceEEEEEEEE-E---CC--------cccCCcEEEEEcCCC--cc-ccceeEECCCcEEEEEEEcCC
Confidence 34667777887 4 22 799999999976654 22 234679999999999988764
No 38
>1nkg_A Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active enzyme, pectin, LY; 1.50A {Aspergillus aculeatus} SCOP: b.3.1.2 b.18.1.25 b.30.5.10 PDB: 2xhn_A* 3njv_A* 3njx_A
Probab=20.82 E-value=1.2e+02 Score=27.17 Aligned_cols=41 Identities=15% Similarity=0.018 Sum_probs=27.7
Q ss_pred ceEEEEEEEcccCCCCCccccCCCccCCCCEEEEEecCCCCceEEEEEeEcCCCceEEEE
Q 048602 31 VIHVGGQVLCQNCFKSYKEWVNGSNPLKGVTVSLTCMDDRSRAMCYKSDETDEQGQFYMT 90 (176)
Q Consensus 31 ~v~V~G~VyCd~C~~~~~~~~~~s~pi~GA~V~v~C~~~~~~~~~~~~~~TD~~G~F~i~ 90 (176)
.=.|.|+|- + . .+=..|.|.+.|++.. -.+.||++|.|.|+
T Consensus 257 RGtVsG~V~------G-----~--~~~~~avv~~~~k~~q------ywt~td~~G~FtI~ 297 (508)
T 1nkg_A 257 RGKVAGTAS------G-----A--DSSMDWVVHWYNDAAQ------YWTYTSSSGSFTSP 297 (508)
T ss_dssp CBEEEEEEE------S-----S--CTTSCEEEEEECSSCE------EEEECCTTCEEECC
T ss_pred ccEEEEEEc------C-----c--cCCceEEEEEcCCCce------eEEEECCCCcEEeC
Confidence 357899987 1 1 1112356666777643 57899999999996
Done!