Query 048603
Match_columns 305
No_of_seqs 151 out of 1515
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 19:22:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048603.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048603hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dae_A KIAA0733 protein; mitog 28.8 23 0.0008 23.8 1.4 32 222-253 9-54 (75)
2 3b4r_A Putative zinc metallopr 18.8 84 0.0029 26.0 3.4 12 26-37 51-62 (224)
3 3cqb_A Probable protease HTPX 15.6 42 0.0014 24.2 0.6 12 24-35 84-95 (107)
4 2knc_A Integrin alpha-IIB; tra 13.5 2.6E+02 0.0088 17.6 3.8 32 5-40 10-42 (54)
5 2k1a_A Integrin alpha-IIB; sin 9.8 3.2E+02 0.011 16.2 4.1 32 5-40 8-40 (42)
6 1uj8_A ORF3, hypothetical prot 9.2 2.1E+02 0.0071 19.4 2.4 31 223-253 3-33 (77)
7 1nth_A Monomethylamine methylt 8.2 3.3E+02 0.011 24.8 3.9 48 238-285 31-88 (458)
8 3fyb_A Protein of unknown func 7.9 1.3E+02 0.0044 21.6 1.0 15 52-66 70-84 (104)
9 1xkm_A Distinctin chain A; por 7.6 71 0.0024 16.3 -0.3 21 255-275 3-23 (26)
10 2q14_A Phosphohydrolase; BT420 7.3 1.5E+02 0.0052 27.0 1.4 17 22-38 89-105 (410)
No 1
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.83 E-value=23 Score=23.81 Aligned_cols=32 Identities=28% Similarity=0.564 Sum_probs=23.5
Q ss_pred cccchhhhh---cCCCC-----------CccHHHHHHHHHHHhcCC
Q 048603 222 INVHIPHHI---SPRIP-----------SYNLKAAHKSIQQNWGKY 253 (305)
Q Consensus 222 ~~yH~~HHl---fP~iP-----------~y~Lp~~~~~l~~~~~~~ 253 (305)
+++|+-|.+ ||.|| .+++.++-+.|.++-++|
T Consensus 9 ~d~qvfheLkQrFPEvPd~VVsqc~~qN~~Nl~aC~~~L~qES~kY 54 (75)
T 2dae_A 9 IDFQVLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLSQESTRY 54 (75)
T ss_dssp CCHHHHHHHHHHSSSSCHHHHHHHHTTTTSCSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcccCcHHHHHHHHHHhccCHHHHHHHHHHhcccc
Confidence 456677765 88887 578888888888776665
No 2
>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}
Probab=18.78 E-value=84 Score=26.03 Aligned_cols=12 Identities=25% Similarity=0.423 Sum_probs=9.8
Q ss_pred HHHHhhhCCCcc
Q 048603 26 VIGHDCAHKSFS 37 (305)
Q Consensus 26 ~l~Hd~~H~~~~ 37 (305)
++.||.+|.-..
T Consensus 51 v~~HElgH~~~A 62 (224)
T 3b4r_A 51 VVLHELGHSYVA 62 (224)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 578999998755
No 3
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=15.63 E-value=42 Score=24.23 Aligned_cols=12 Identities=25% Similarity=0.426 Sum_probs=9.5
Q ss_pred HHHHHHhhhCCC
Q 048603 24 FFVIGHDCAHKS 35 (305)
Q Consensus 24 l~~l~Hd~~H~~ 35 (305)
.++++||.+|..
T Consensus 84 ~aVlaHElgH~~ 95 (107)
T 3cqb_A 84 EAVLAHEVSHIA 95 (107)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 357999999964
No 4
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=13.52 E-value=2.6e+02 Score=17.61 Aligned_cols=32 Identities=13% Similarity=0.195 Sum_probs=17.2
Q ss_pred chhhHHHHHHHHHHHHHHHHH-HHHHhhhCCCccCCc
Q 048603 5 APWYLLPLAWAWTGTAVTGFF-VIGHDCAHKSFSKNK 40 (305)
Q Consensus 5 ~~w~~~~~~~~~~G~~~~~l~-~l~Hd~~H~~~~~~~ 40 (305)
.|||...++. +.|..+.++. .+..-|| |||++
T Consensus 10 vp~wiIi~sv-l~GLllL~li~~~LwK~G---FFkR~ 42 (54)
T 2knc_A 10 IPIWWVLVGV-LGGLLLLTILVLAMWKVG---FFKRN 42 (54)
T ss_dssp CCHHHHHHHH-HHHHHHHHHHHHHHHHHH---HTTTT
T ss_pred cchHHHHHHH-HHHHHHHHHHHHHHHHcC---cccCC
Confidence 3677666554 4666665543 3445554 55443
No 5
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=9.81 E-value=3.2e+02 Score=16.16 Aligned_cols=32 Identities=13% Similarity=0.195 Sum_probs=19.0
Q ss_pred chhhHHHHHHHHHHHHHHHHH-HHHHhhhCCCccCCc
Q 048603 5 APWYLLPLAWAWTGTAVTGFF-VIGHDCAHKSFSKNK 40 (305)
Q Consensus 5 ~~w~~~~~~~~~~G~~~~~l~-~l~Hd~~H~~~~~~~ 40 (305)
.|||...++. +.|..+.++- .+..-|| |||++
T Consensus 8 vp~wiIi~s~-l~GLllL~li~~~LwK~G---FFkR~ 40 (42)
T 2k1a_A 8 IPIWWVLVGV-LGGLLLLTILVLAMWKVG---FFKRN 40 (42)
T ss_dssp CCHHHHHHHH-HHHHHHHHHHHHHHHHTT---TTCCC
T ss_pred cchHHHHHHH-HHHHHHHHHHHHHHHHcC---cccCC
Confidence 4677766665 4777766654 3455665 55544
No 6
>1uj8_A ORF3, hypothetical protein YFHJ; iron-sulfur cluster, ISC, structural genomics, unknown function; 1.75A {Escherichia coli} SCOP: a.159.5.1 PDB: 2bzt_A
Probab=9.23 E-value=2.1e+02 Score=19.44 Aligned_cols=31 Identities=10% Similarity=0.177 Sum_probs=26.6
Q ss_pred ccchhhhhcCCCCCccHHHHHHHHHHHhcCC
Q 048603 223 NVHIPHHISPRIPSYNLKAAHKSIQQNWGKY 253 (305)
Q Consensus 223 ~yH~~HHlfP~iP~y~Lp~~~~~l~~~~~~~ 253 (305)
+-|.-||--.+|-|-.-.++...|.+++|+.
T Consensus 3 ~~~~~~~~~~~lkW~D~~dIA~~L~e~~Pd~ 33 (77)
T 1uj8_A 3 GSHHHHHHGSGLKWTDSREIGEALYDAYPDL 33 (77)
T ss_dssp -CCCCCCSSSCBCTTCHHHHHHHHHHHSTTS
T ss_pred CcccccccCCCCCCcCHHHHHHHHHHHCCCC
Confidence 4577788899999999999999999998774
No 7
>1nth_A Monomethylamine methyltransferase MTMB1; TIM barrel; HET: BGX; 1.55A {Methanosarcina barkeri} SCOP: c.1.25.1 PDB: 1l2q_A* 1tv2_A* 1tv3_A* 1tv4_A*
Probab=8.20 E-value=3.3e+02 Score=24.79 Aligned_cols=48 Identities=13% Similarity=0.283 Sum_probs=33.6
Q ss_pred cHHHHHHHHHHHhcCCcccC--Cc-------cHHHHHHhhcceEEEeCCC-CEEEcCc
Q 048603 238 NLKAAHKSIQQNWGKYLNEA--SW-------NWRLMKTIMTVCHIYDKEQ-NYVAFDQ 285 (305)
Q Consensus 238 ~Lp~~~~~l~~~~~~~y~~~--~~-------~~~~l~~~~~~~~~~d~~~-~~~~f~~ 285 (305)
..|+-.+.|+++||..|... +. .+++=..++..|.+|..|. |.+.|.+
T Consensus 31 ~i~~ka~eL~~kY~I~~d~efiP~d~dm~d~lF~Ag~ell~e~GiyCtDT~Rii~~te 88 (458)
T 1nth_A 31 KIPMKAMELKQKYGLDFKGEFIPTDKDMMEKLFKAGFEMLLECGIYCTDTHRIVKYTE 88 (458)
T ss_dssp HHHHHHHHHHHHTTCCCTTCSSCCCHHHHHHHHHHHHHHHHHHCEEETTTTEEECCCH
T ss_pred HhhHHHHHHHHHhCcccCCCCCCChHHHHHHHHHHHHHHHHhcCeEEecCCceeecCH
Confidence 35666789999999887432 11 1344444567899999998 8988866
No 8
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=7.92 E-value=1.3e+02 Score=21.58 Aligned_cols=15 Identities=13% Similarity=0.379 Sum_probs=12.8
Q ss_pred hhhhCChhhhhHHHh
Q 048603 52 LPLIYPYEPWRFKHD 66 (305)
Q Consensus 52 ~~~~~~~~~wr~~H~ 66 (305)
..-|+||..||..|-
T Consensus 70 ~vYGMpy~eWKa~~Q 84 (104)
T 3fyb_A 70 YVYGMPFAEWKTLYQ 84 (104)
T ss_dssp HHHSSCHHHHHHHHC
T ss_pred HHhCCCHHHHHHHHC
Confidence 467899999999984
No 9
>1xkm_A Distinctin chain A; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=7.63 E-value=71 Score=16.29 Aligned_cols=21 Identities=14% Similarity=0.303 Sum_probs=13.4
Q ss_pred ccCCccHHHHHHhhcceEEEe
Q 048603 255 NEASWNWRLMKTIMTVCHIYD 275 (305)
Q Consensus 255 ~~~~~~~~~l~~~~~~~~~~d 275 (305)
++.+....++-+.+|.|++..
T Consensus 3 revppgftaliktlrkckii~ 23 (26)
T 1xkm_A 3 REVPPGFTALIKTLRKCKIIX 23 (26)
T ss_dssp TCSCHHHHHHHHHHHHHHCC-
T ss_pred CcCCCcHHHHHHHHHhceeee
Confidence 345555677777778887654
No 10
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=7.27 E-value=1.5e+02 Score=26.98 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=12.9
Q ss_pred HHHHHHHHhhhCCCccC
Q 048603 22 TGFFVIGHDCAHKSFSK 38 (305)
Q Consensus 22 ~~l~~l~Hd~~H~~~~~ 38 (305)
..+..+.||.||+.|+.
T Consensus 89 ~~~AaLlHDiGh~PfsH 105 (410)
T 2q14_A 89 VQAAILLHDIGHGPFSH 105 (410)
T ss_dssp HHHHHHHTTTTCCTTHH
T ss_pred HHHHHHHhccCCCcccc
Confidence 34556899999998763
Done!