BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048605
(450 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 218 bits (555), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 148/444 (33%), Positives = 228/444 (51%), Gaps = 47/444 (10%)
Query: 2 EVKTISRECIKPSSATPLHLKSYKLCLLDQYQNHQYLSLFFYYPLNLSGAAANNDLILSN 61
+++ +S E I PSS TP LK YK+ LDQ ++ +YP L +++L +
Sbjct: 4 QMEKVSEELILPSSPTPQSLKCYKISHLDQLLLTCHIPFILFYPNPL-----DSNLDPAQ 58
Query: 62 RLQLLKQSLSETLVQYYPLAGKLTEIYSVDCNDEGIYFQEARAKSSLNEFLSK-PDLCLI 120
Q LKQSLS+ L +YPLAG++ SVDCND G+ F EAR ++ L++ + +L +
Sbjct: 59 TSQHLKQSLSKVLTHFYPLAGRINVNSSVDCNDSGVPFVEARVQAQLSQAIQNVVELEKL 118
Query: 121 NKFIPVDGNEQSGQITGAQAAK--VQVTSFACGGQVICACISHMFGDVLTFTSFMGSWTA 178
++++P G+I + V+++ F CGG I +SH DVL+ +F+ +WTA
Sbjct: 119 DQYLP-SAAYPGGKIEVNEDVPLAVKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTA 177
Query: 179 TARKYSEEAVPYPIYD-ASSFFPPYDAYPRELNQLALGTRFCRTGRFVTKRFVFEAKAIA 237
T R +E + P +D A+ FPP D P V KRFVF+ + I
Sbjct: 178 TCRGETE--IVLPNFDLAARHFPPVDNTP--------SPELVPDENVVMKRFVFDKEKIG 227
Query: 238 ELKARASSSS-VRNPTRVEVVSALLAKPIMAAVETKSGSHKPTFLTHAVNLRRKAKPPLS 296
L+A+ASS+S +N +RV++V A + K ++ K G+ + AVNLR + PPL
Sbjct: 228 ALRAQASSASEEKNFSRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQAVNLRSRMNPPLP 287
Query: 297 EHLVGNIIYHVNTLCTDDDVEID----DLVCQLREAITRLDGDFVKS-LQGAGGFRNLCQ 351
+ +GNI L D E D DL+ LR ++ + + D L+G L
Sbjct: 288 HYAMGNI---ATLLFAAVDAEWDKDFPDLIGPLRTSLEKTEDDHNHELLKGMTCLYEL-- 342
Query: 352 EIKDEAEVYTEVKDRILFTDWCSFKGFYDINFRWGKPIWVSVAGFGGSTISIYPYIVLMN 411
E ++ + FT WC GFYD++F WGKP+ F ++ LM+
Sbjct: 343 ----------EPQELLSFTSWCRL-GFYDLDFGWGKPLSACTTTFPKRNAAL-----LMD 386
Query: 412 TRLGDGIEAWVNLLEDDMNLLQVD 435
TR GDG+EAW+ + ED+M +L V+
Sbjct: 387 TRSGDGVEAWLPMAEDEMAMLPVE 410
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 101/462 (21%), Positives = 191/462 (41%), Gaps = 63/462 (13%)
Query: 1 MEVKTISRECIKPSSATP-LHLKSYKLCLLDQYQNHQYLSLFFYYPLNLSGAAANNDLIL 59
M+++ ++P+ TP +L + + L+ N S++FY P +G++ D
Sbjct: 6 MKIEVKESTMVRPAQETPGRNLWNSNVDLV--VPNFHTPSVYFYRP---TGSSNFFDA-- 58
Query: 60 SNRLQLLKQSLSETLVQYYPLAGKLTE----IYSVDCNDEGIYFQEARAKSSLNEFLSKP 115
++LK +LS LV +YP+AG+L ++CN EG+ F EA + +++F
Sbjct: 59 ----KVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFA 114
Query: 116 DLCLINKFIPVDGNEQSGQITGAQAAKVQVTSFACGGQVICACISHMFGDVLTFTSFMGS 175
+ + IP Q I+ +QVT F CGG + + H D + F+ S
Sbjct: 115 PTLELRRLIPAVDYSQG--ISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINS 172
Query: 176 WTATARKYSEEAVPY-------------PIYDASSFFPPYDAYPRELNQLALGTRFCRTG 222
W+ AR P+ P + + PP LA+ + +
Sbjct: 173 WSDMARGLDVTLPPFIDRTLLRARDPPQPQFQHIEYQPP--------PALAVSPQTAASD 224
Query: 223 RF---VTKRFVFEAKAIAELKARA-SSSSVRNPTRVEVVSALLAKPIMAA--VETKSGSH 276
F + I+ LKA++ + + + E+++ + + A +E G
Sbjct: 225 SVPETAVSIFKLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQG-- 282
Query: 277 KPTFLTHAVNLRRKAKPPLSEHLVGNIIYHVNTLCTDDDVEIDDL---VCQLREAITRLD 333
T L A + R + +P L GN+I+ + D+E + ++ +A+ R+D
Sbjct: 283 --TKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMD 340
Query: 334 GDFVKSLQGAGGFRNLCQEIKDEAE-VYTEVKDRILFTDWCSFKGFYDINFRWGKPIWVS 392
D+++S A + L ++K +T + T W +D +F WG+PI++
Sbjct: 341 NDYLRS---ALDYLELQPDLKALVRGAHTFKXPNLGITSWVRLP-IHDADFGWGRPIFMG 396
Query: 393 VAGFGGSTISIYPYIVLMNTRLGDG-IEAWVNLLEDDMNLLQ 433
G +S ++ + DG + ++L + M L Q
Sbjct: 397 PGGIAYEGLSF-----ILPSPTNDGSMSVAISLQGEHMKLFQ 433
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 102/459 (22%), Positives = 191/459 (41%), Gaps = 57/459 (12%)
Query: 1 MEVKTISRECIKPSSATP-LHLKSYKLCLLDQYQNHQYLSLFFYYPLNLSGAAANNDLIL 59
M+++ ++P+ TP +L + + L+ N S++FY P +G++ D
Sbjct: 3 MKIEVKESTMVRPAQETPGRNLWNSNVDLV--VPNFHTPSVYFYRP---TGSSNFFDA-- 55
Query: 60 SNRLQLLKQSLSETLVQYYPLAGKLTE----IYSVDCNDEGIYFQEARAKSSLNEFLSKP 115
++LK +LS LV +YP+AG+L ++CN EG+ F EA + +++F
Sbjct: 56 ----KVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFA 111
Query: 116 DLCLINKFIPVDGNEQSGQITGAQAAKVQVTSFACGGQVICACISHMFGDVLTFTSFMGS 175
+ + IP Q I+ +QVT F CGG + + H D + F+ S
Sbjct: 112 PTLELRRLIPAVDYSQG--ISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINS 169
Query: 176 WTATARKYSEEAVPY-------------PIYDASSFFPPYDAYPRELNQLALGTRFCRTG 222
W+ AR P+ P + + PP + Q A T
Sbjct: 170 WSDMARGLDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPAL--KVSPQTAKSDSVPETA 227
Query: 223 RFVTKRFVFEAKAIAELKARASS-SSVRNPTRVEVVSALLAKPIMAA--VETKSGSHKPT 279
+ F + I+ LKA++ + + + E+++ + + A +E G T
Sbjct: 228 VSI---FKLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQG----T 280
Query: 280 FLTHAVNLRRKAKPPLSEHLVGNIIYHVNTLCTDDDVEIDDL---VCQLREAITRLDGDF 336
L A + R + +P L GN+I+ + D+E + ++ +A+ R+D D+
Sbjct: 281 KLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDY 340
Query: 337 VKSLQGAGGFRNLCQEIKDEAE-VYTEVKDRILFTDWCSFKGFYDINFRWGKPIWVSVAG 395
++S A + L ++K +T + T W +D +F WG+PI++ G
Sbjct: 341 LRS---ALDYLELQPDLKALVRGAHTFKCPNLGITSWVRLP-IHDADFGWGRPIFMGPGG 396
Query: 396 FGGSTISIYPYIVLMNTRLGDG-IEAWVNLLEDDMNLLQ 433
+S ++ + DG + ++L + M L Q
Sbjct: 397 IAYEGLSF-----ILPSPTNDGSMSVAISLQGEHMKLFQ 430
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 100/462 (21%), Positives = 190/462 (41%), Gaps = 63/462 (13%)
Query: 1 MEVKTISRECIKPSSATP-LHLKSYKLCLLDQYQNHQYLSLFFYYPLNLSGAAANNDLIL 59
M+++ ++P+ TP +L + + L+ N S++FY P +G++ D
Sbjct: 6 MKIEVKESTMVRPAQETPGRNLWNSNVDLV--VPNFHTPSVYFYRP---TGSSNFFDA-- 58
Query: 60 SNRLQLLKQSLSETLVQYYPLAGKLTE----IYSVDCNDEGIYFQEARAKSSLNEFLSKP 115
++LK +LS LV +YP+AG+L ++CN EG+ F EA + +++F
Sbjct: 59 ----KVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFA 114
Query: 116 DLCLINKFIPVDGNEQSGQITGAQAAKVQVTSFACGGQVICACISHMFGDVLTFTSFMGS 175
+ + IP Q I+ +QVT F GG + + H D + F+ S
Sbjct: 115 PTLELRRLIPAVDYSQG--ISSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINS 172
Query: 176 WTATARKYSEEAVPY-------------PIYDASSFFPPYDAYPRELNQLALGTRFCRTG 222
W+ AR P+ P + + PP LA+ + +
Sbjct: 173 WSDMARGLDVTLPPFIDRTLLRARDPPQPQFQHIEYQPP--------PALAVSPQTAASD 224
Query: 223 RF---VTKRFVFEAKAIAELKARA-SSSSVRNPTRVEVVSALLAKPIMAA--VETKSGSH 276
F + I+ LKA++ + + + E+++ + + A +E G
Sbjct: 225 SVPETAVSIFKLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQG-- 282
Query: 277 KPTFLTHAVNLRRKAKPPLSEHLVGNIIYHVNTLCTDDDVEIDDL---VCQLREAITRLD 333
T L A + R + +P L GN+I+ + D+E + ++ +A+ R+D
Sbjct: 283 --TKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMD 340
Query: 334 GDFVKSLQGAGGFRNLCQEIKDEAE-VYTEVKDRILFTDWCSFKGFYDINFRWGKPIWVS 392
D+++S A + L ++K +T + T W +D +F WG+PI++
Sbjct: 341 NDYLRS---ALDYLELQPDLKALVRGAHTFKXPNLGITSWVRLP-IHDADFGWGRPIFMG 396
Query: 393 VAGFGGSTISIYPYIVLMNTRLGDG-IEAWVNLLEDDMNLLQ 433
G +S ++ + DG + ++L + M L Q
Sbjct: 397 PGGIAYEGLSF-----ILPSPTNDGSMSVAISLQGEHMKLFQ 433
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 83/354 (23%), Positives = 131/354 (37%), Gaps = 47/354 (13%)
Query: 66 LKQSLSETLVQYYPLAGKLT---------EIYSVDCNDEGIYFQEARAKSSLNEFL-SKP 115
+K SLS TL +YP GKL EI V+ + + F E LNE + P
Sbjct: 65 IKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNL--DLNELTGNHP 122
Query: 116 DLCLINKF---IPVDG-NEQSGQITGAQAAKVQVTSFACGGQVICACISHMFGDVLTFTS 171
C +KF +P+ G + + VQVT F G I H GD T
Sbjct: 123 RNC--DKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFC 180
Query: 172 FMGSWTATARKYSEEAV-----PYPIYDASSFFPPYD------AYPRELNQLALGTRFCR 220
F+ +WT+ AR + + P+YD +P D A N+ +
Sbjct: 181 FLKAWTSIARSGNNDESFLANGTRPLYDRIIKYPMLDEAYLKRAKVESFNEDYVTQSLAG 240
Query: 221 TGRFVTKRFVFEAKAIAELKARASSSSVRNPTRVEVVSALLAKPIMAAVETKSGSHKPTF 280
+ F+ I +LK R + + PT V S +A + + KS + K
Sbjct: 241 PSDKLRATFILTRAVINQLKDRVLA---QLPTLEYVSSFTVACAYIWSCIAKSRNDKLQL 297
Query: 281 LTHAVNLRRKAKPPLSEHLVGNIIYHVNTLC-TDDDVEIDDLVCQLREAITRLDGDFVKS 339
++ R + KPP+ GN + + T+ + + + + L
Sbjct: 298 FGFPIDRRARMKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHKTLTDY 357
Query: 340 LQGAGGFRNLCQEIKDEAEVYTEVKDRILFTDWCSFKG-----FYDINFRWGKP 388
G +KD+ E + ++ + T G FYD++F WGKP
Sbjct: 358 KDGV---------LKDDMESFNDLVSEGMPTTMTWVSGTPKLRFYDMDFGWGKP 402
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 90/369 (24%), Positives = 131/369 (35%), Gaps = 77/369 (20%)
Query: 66 LKQSLSETLVQYYPLAGKLT---------EIYSVDCNDEGIYFQEARAKSSLNEFL-SKP 115
+K SLS TL +YP GKL EI V+ + + F E LNE + P
Sbjct: 65 IKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNL--DLNELTGNHP 122
Query: 116 DLCLINKF---IPVDG-NEQSGQITGAQAAKVQVTSFACGGQVICACISHMFGDVLTFTS 171
C +KF +P+ G + + VQVT F G I H GD T
Sbjct: 123 RNC--DKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFC 180
Query: 172 FMGSWTATARKYSEEAV-----PYPIYDASSFFPPYD------AYPRELNQLALGTRFCR 220
F+ +WT+ AR + + P+YD +P D A N+ +
Sbjct: 181 FLKAWTSIARSGNNDESFLANGTRPLYDRIIKYPXLDEAYLKRAKVESFNEDYVTQSLAG 240
Query: 221 TGRFVTKRFVFEAKAIAELKARASSSSVRNPTRVEVVSALLAKPIMAAVETKSGSHKPTF 280
+ F+ I +LK R + + PT V S +A + + KS + K
Sbjct: 241 PSDKLRATFILTRAVINQLKDRVLA---QLPTLEYVSSFTVACAYIWSCIAKSRNDKLQL 297
Query: 281 LTHAVNLRRKAKPPLSEHLVGNIIYHVNTLCTDDDVEIDDLVCQLREAITRLDGDFVKSL 340
++ R + KPP+ GN + + A T L L
Sbjct: 298 FGFPIDRRARXKPPIPTAYFGNCVGGCAAI-----------------AKTNL-------L 333
Query: 341 QGAGGFRNLCQEIKDE-AEVYTEVKDRILFTDWCSFKG--------------------FY 379
G GF + I + + T+ KD +L D SF FY
Sbjct: 334 IGKEGFITAAKLIGENLHKTLTDYKDGVLKDDXESFNDLVSEGXPTTXTWVSGTPKLRFY 393
Query: 380 DINFRWGKP 388
D +F WGKP
Sbjct: 394 DXDFGWGKP 402
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 77/208 (37%), Gaps = 36/208 (17%)
Query: 13 PSSATPLHLKSYKLCLLDQYQNHQYLSL-----FFYYPLNLSGAAANNDLILSNRLQLLK 67
P SAT +L L Y +H +L+ +Y L +S +I + LK
Sbjct: 14 PGSAT-------ELTLPLTYFDHVWLAFHRXRRILFYKLPISRPDFVQTIIPT-----LK 61
Query: 68 QSLSETLVQYYPLAGKLT---------EIYSVDCNDEGIYFQEARAKSSLNEFLSKPDLC 118
SLS TL Y PLAG + E+ V N + F E+ + +
Sbjct: 62 DSLSLTLKYYLPLAGNVACPQDWSGYPELRYVTGNSVSVIFSESDXDFNYLIGYHPRNTK 121
Query: 119 LINKFIPVDGNEQSGQITGAQAAKV---QVTSFACGGQVICACISHMFGDVLTFTSFMGS 175
F+P + G Q A V QVT F G I H+ GD T F+ +
Sbjct: 122 DFYHFVPQLAEPKDAP--GVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRA 179
Query: 176 WTATARKYSEEAVPYPIYDASSFFPPYD 203
W + +E + A+ F P YD
Sbjct: 180 WALLNKFGGDEQ-----FLANEFIPFYD 202
>pdb|3KHY|A Chain A, Crystal Structure Of A Propionate Kinase From Francisella
Tularensis Subsp. Tularensis Schu S4
pdb|3KHY|B Chain B, Crystal Structure Of A Propionate Kinase From Francisella
Tularensis Subsp. Tularensis Schu S4
Length = 384
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 60/149 (40%), Gaps = 27/149 (18%)
Query: 212 LALGTRFCRTGRFVTKRFVFEAKAIAELKARASSSSVRNPTRVEVV----SALLAKPIMA 267
+A+G R G++ +K + A ++ ++KA + + + NP +E + P +A
Sbjct: 80 VAIGHRVVHGGQYFSKSVLINADSLEKIKACIALAPLHNPAHIEGIRFCQQIFPELPQVA 139
Query: 268 AVETKSGSHKPTF---------LTHAVNLRR-------------KAKPPLSEHLVGNIIY 305
+T P++ LTH N+R+ +A L++ I+
Sbjct: 140 VFDTAFHQTXPSYIAEYAIPYELTHKHNIRKYGAHGTSHKYVSEQAAKILTQQKANVIVA 199
Query: 306 HVNTLCTDDDVEIDDLVCQLREAITRLDG 334
H+ C+ V +D +T LDG
Sbjct: 200 HLGNGCSITAV-VDGKSIDTSXGLTPLDG 227
>pdb|2NP9|A Chain A, Crystal Structure Of A Dioxygenase In The Crotonase
Superfamily
pdb|2NP9|B Chain B, Crystal Structure Of A Dioxygenase In The Crotonase
Superfamily
pdb|2NP9|C Chain C, Crystal Structure Of A Dioxygenase In The Crotonase
Superfamily
Length = 440
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 277 KPTFLTHAVNLR--RKAKPPLSEHLV--GNIIYHVN---TLCTDDDVEIDDLVCQLREAI 329
K + A NLR R A P +S ++ G I+ L D+ VE D+L + ++
Sbjct: 323 KEGIIPGAANLRLGRFAGPRVSRQVILEGRRIWAKEPEARLLVDEVVEPDELDAAIERSL 382
Query: 330 TRLDGDFV 337
TRLDGD V
Sbjct: 383 TRLDGDAV 390
>pdb|2PG8|A Chain A, Crystal Structure Of R254k Mutanat Of Dpgc With Bound
Substrate Analog
pdb|2PG8|B Chain B, Crystal Structure Of R254k Mutanat Of Dpgc With Bound
Substrate Analog
pdb|2PG8|C Chain C, Crystal Structure Of R254k Mutanat Of Dpgc With Bound
Substrate Analog
Length = 417
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 277 KPTFLTHAVNLR--RKAKPPLSEHLV--GNIIYHVN---TLCTDDDVEIDDLVCQLREAI 329
K + A NLR R A P +S ++ G I+ L D+ VE D+L + ++
Sbjct: 312 KEGIIPGAANLRLGRFAGPRVSRQVILEGRRIWAKEPEARLLVDEVVEPDELDAAIERSL 371
Query: 330 TRLDGDFV 337
TRLDGD V
Sbjct: 372 TRLDGDAV 379
>pdb|2HS0|A Chain A, T. Maritima Purl Complexed With Atp
pdb|2HS3|A Chain A, T. Maritima Purl Complexed With Fgar
pdb|2HS4|A Chain A, T. Maritima Purl Complexed With Fgar And Amppcp
Length = 603
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 55 NDLILSNRLQLLKQSLSETLVQYYPLAGKLTEIYSVDCNDEGIYFQEARAKSSLNEF 111
NDL++ +QLL + E +V+Y P GK+ E V+ F+E A+ ++
Sbjct: 326 NDLVMEVPVQLLANAPEEDIVEYTP--GKIPEFKRVE-------FEEVNAREVFEQY 373
>pdb|2HRU|A Chain A, T. Maritima Purl Complexed With Adp
pdb|2HRY|A Chain A, T. Maritima Purl Complexed With Amppcp
Length = 603
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 55 NDLILSNRLQLLKQSLSETLVQYYPLAGKLTEIYSVDCNDEGIYFQEARAKSSLNEF 111
NDL++ +QLL + E +V+Y P GK+ E V+ F+E A+ ++
Sbjct: 326 NDLVMEVPVQLLANAPEEDIVEYTP--GKIPEFKRVE-------FEEVNAREVFEQY 373
>pdb|3D54|A Chain A, Stucture Of Purlqs From Thermotoga Maritima
pdb|3D54|E Chain E, Stucture Of Purlqs From Thermotoga Maritima
pdb|3D54|I Chain I, Stucture Of Purlqs From Thermotoga Maritima
Length = 629
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 55 NDLILSNRLQLLKQSLSETLVQYYPLAGKLTEIYSVDCNDEGIYFQEARAKSSLNEF 111
NDL++ +QLL + E +V+Y P GK+ E V+ F+E A+ ++
Sbjct: 352 NDLVMEVPVQLLANAPEEDIVEYTP--GKIPEFKRVE-------FEEVNAREVFEQY 399
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,100,497
Number of Sequences: 62578
Number of extensions: 537350
Number of successful extensions: 1195
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1164
Number of HSP's gapped (non-prelim): 19
length of query: 450
length of database: 14,973,337
effective HSP length: 102
effective length of query: 348
effective length of database: 8,590,381
effective search space: 2989452588
effective search space used: 2989452588
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)